Query 006457
Match_columns 644
No_of_seqs 773 out of 4358
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 23:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-120 5E-125 1019.1 69.6 620 4-642 220-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-118 9E-123 977.4 68.5 595 35-644 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.4E-77 3E-82 673.0 58.9 600 3-638 118-745 (857)
4 PLN03218 maturation of RBCL 1; 100.0 8.4E-69 1.8E-73 589.6 60.2 507 3-529 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.2E-63 2.5E-68 549.0 54.0 471 4-489 404-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.6E-61 3.4E-66 530.6 45.3 404 3-425 155-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-30 1.7E-34 292.9 55.4 498 3-524 360-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-29 3.1E-34 290.8 56.0 497 3-523 326-833 (899)
9 PRK11447 cellulose synthase su 99.9 2.1E-21 4.5E-26 224.1 54.8 495 1-523 57-701 (1157)
10 PRK11447 cellulose synthase su 99.9 9.4E-21 2E-25 218.7 55.3 501 7-522 29-666 (1157)
11 PF14432 DYW_deaminase: DYW fa 99.9 2E-26 4.4E-31 186.0 5.8 94 529-634 2-116 (116)
12 KOG4626 O-linked N-acetylgluco 99.9 3.4E-21 7.3E-26 188.5 34.1 465 23-515 35-512 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.8E-17 3.8E-22 183.1 54.9 496 2-523 74-707 (987)
14 PRK09782 bacteriophage N4 rece 99.9 8.8E-18 1.9E-22 185.5 49.7 476 16-523 54-673 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-18 6.1E-23 186.2 40.5 420 78-522 132-571 (615)
16 KOG4626 O-linked N-acetylgluco 99.9 4.1E-19 8.9E-24 174.0 27.9 419 78-522 53-485 (966)
17 PRK11788 tetratricopeptide rep 99.9 7.3E-19 1.6E-23 181.1 31.5 294 230-530 42-355 (389)
18 PRK11788 tetratricopeptide rep 99.8 1.8E-18 3.8E-23 178.3 29.3 295 47-392 44-354 (389)
19 PRK10049 pgaA outer membrane p 99.8 3.9E-16 8.4E-21 172.6 44.6 394 45-493 22-461 (765)
20 PRK15174 Vi polysaccharide exp 99.8 1.4E-16 3E-21 172.4 39.5 353 120-493 17-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 6.4E-16 1.4E-20 170.9 43.2 391 78-522 20-456 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 1E-15 2.2E-20 166.2 42.7 422 40-492 129-575 (615)
23 PRK14574 hmsH outer membrane p 99.8 7.1E-15 1.5E-19 159.4 45.5 434 41-495 38-520 (822)
24 PRK15174 Vi polysaccharide exp 99.8 1.3E-15 2.9E-20 164.8 39.2 327 187-523 41-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 5.2E-14 1.1E-18 152.7 45.6 421 83-523 44-514 (822)
26 KOG2002 TPR-containing nuclear 99.7 3.2E-14 7E-19 147.5 38.1 435 72-523 269-746 (1018)
27 KOG2002 TPR-containing nuclear 99.7 5.7E-13 1.2E-17 138.5 43.4 479 22-524 146-677 (1018)
28 KOG4422 Uncharacterized conser 99.7 1.2E-12 2.5E-17 123.9 36.8 334 37-401 115-478 (625)
29 KOG4422 Uncharacterized conser 99.7 5.3E-13 1.2E-17 126.2 32.5 256 25-320 196-463 (625)
30 KOG0495 HAT repeat protein [RN 99.7 1.9E-11 4.1E-16 121.8 43.7 488 17-535 387-891 (913)
31 KOG2003 TPR repeat-containing 99.6 7.1E-13 1.5E-17 126.0 30.9 463 40-508 200-709 (840)
32 KOG2076 RNA polymerase III tra 99.6 1E-11 2.2E-16 128.6 40.6 331 8-343 141-544 (895)
33 KOG0495 HAT repeat protein [RN 99.6 9.9E-10 2.1E-14 109.8 44.0 422 82-523 385-847 (913)
34 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4.2E-19 140.3 11.2 254 261-520 15-275 (280)
35 KOG1915 Cell cycle control pro 99.5 7.2E-10 1.6E-14 106.7 40.5 486 16-520 83-623 (677)
36 KOG2076 RNA polymerase III tra 99.5 5.1E-11 1.1E-15 123.5 32.8 330 198-532 150-522 (895)
37 KOG0547 Translocase of outer m 99.5 1.6E-10 3.4E-15 111.7 32.7 212 303-520 339-564 (606)
38 KOG2003 TPR repeat-containing 99.5 1.5E-11 3.3E-16 117.1 24.8 430 74-522 199-689 (840)
39 KOG4318 Bicoid mRNA stability 99.5 7.5E-11 1.6E-15 121.5 29.7 447 59-532 11-603 (1088)
40 PF13429 TPR_15: Tetratricopep 99.5 6.4E-13 1.4E-17 129.6 13.7 256 146-417 13-274 (280)
41 PRK10747 putative protoheme IX 99.5 7.8E-11 1.7E-15 120.4 29.2 274 236-520 97-388 (398)
42 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.8E-16 123.9 22.2 244 269-521 334-585 (638)
43 KOG1155 Anaphase-promoting com 99.5 7.2E-10 1.6E-14 106.6 32.8 300 195-521 234-552 (559)
44 PRK10747 putative protoheme IX 99.4 1.4E-10 3E-15 118.5 30.2 255 198-489 128-391 (398)
45 KOG1126 DNA-binding cell divis 99.4 1.6E-11 3.5E-16 123.3 21.6 276 238-522 334-620 (638)
46 KOG1915 Cell cycle control pro 99.4 1.2E-08 2.6E-13 98.5 38.7 450 46-520 81-583 (677)
47 TIGR00540 hemY_coli hemY prote 99.4 5.7E-10 1.2E-14 114.7 32.3 282 200-487 96-398 (409)
48 TIGR00540 hemY_coli hemY prote 99.4 5.3E-10 1.2E-14 114.9 30.3 282 152-453 95-396 (409)
49 KOG1174 Anaphase-promoting com 99.4 7.7E-09 1.7E-13 98.1 33.4 381 107-495 96-507 (564)
50 KOG1173 Anaphase-promoting com 99.4 5.6E-09 1.2E-13 103.1 32.9 260 254-520 244-516 (611)
51 TIGR02521 type_IV_pilW type IV 99.3 2.8E-10 6E-15 108.0 22.4 197 324-521 30-231 (234)
52 KOG1155 Anaphase-promoting com 99.3 2.1E-08 4.6E-13 96.7 33.4 252 261-521 234-494 (559)
53 KOG2047 mRNA splicing factor [ 99.3 1.4E-07 3.1E-12 94.6 40.0 493 6-521 102-686 (835)
54 PF13041 PPR_2: PPR repeat fam 99.3 7.7E-12 1.7E-16 85.5 6.6 50 354-403 1-50 (50)
55 PF13041 PPR_2: PPR repeat fam 99.3 5.5E-12 1.2E-16 86.2 5.0 50 36-85 1-50 (50)
56 KOG1173 Anaphase-promoting com 99.3 3.8E-08 8.3E-13 97.4 32.3 476 7-502 17-532 (611)
57 COG3071 HemY Uncharacterized e 99.3 1.9E-08 4.2E-13 95.5 29.1 286 154-487 97-389 (400)
58 KOG2047 mRNA splicing factor [ 99.3 6.3E-07 1.4E-11 90.1 40.8 408 7-435 139-630 (835)
59 COG2956 Predicted N-acetylgluc 99.2 5.9E-09 1.3E-13 95.9 24.3 305 202-543 49-368 (389)
60 KOG1840 Kinesin light chain [C 99.2 4.2E-09 9.1E-14 107.2 25.5 231 290-520 199-477 (508)
61 KOG0547 Translocase of outer m 99.2 4.1E-08 8.9E-13 95.4 30.6 413 41-489 118-567 (606)
62 KOG4318 Bicoid mRNA stability 99.2 4.4E-08 9.4E-13 101.7 31.5 448 3-486 22-592 (1088)
63 COG3071 HemY Uncharacterized e 99.2 3.5E-08 7.7E-13 93.8 27.8 274 236-520 97-388 (400)
64 COG2956 Predicted N-acetylgluc 99.2 3.7E-08 8.1E-13 90.8 26.0 192 192-385 73-278 (389)
65 PRK12370 invasion protein regu 99.1 1.9E-08 4.2E-13 107.5 25.8 260 253-523 255-536 (553)
66 KOG3785 Uncharacterized conser 99.1 2.4E-08 5.3E-13 92.8 22.4 372 13-416 29-453 (557)
67 KOG4162 Predicted calmodulin-b 99.1 6.3E-07 1.4E-11 92.2 34.2 454 48-522 237-783 (799)
68 TIGR02521 type_IV_pilW type IV 99.1 3E-08 6.5E-13 93.9 23.9 191 254-450 31-226 (234)
69 KOG1840 Kinesin light chain [C 99.1 2.2E-08 4.7E-13 102.1 23.5 233 224-487 200-478 (508)
70 PRK12370 invasion protein regu 99.1 2.5E-08 5.4E-13 106.7 24.0 212 304-522 275-502 (553)
71 KOG2376 Signal recognition par 99.1 5.3E-06 1.1E-10 83.1 36.8 435 44-519 18-517 (652)
72 KOG3785 Uncharacterized conser 99.1 2.5E-06 5.4E-11 79.8 32.3 191 330-524 290-492 (557)
73 KOG1129 TPR repeat-containing 99.0 8.7E-09 1.9E-13 94.8 15.9 230 258-523 227-459 (478)
74 PRK11189 lipoprotein NlpI; Pro 99.0 3.2E-08 6.8E-13 96.8 20.8 186 328-522 67-265 (296)
75 KOG0985 Vesicle coat protein c 99.0 1.7E-06 3.6E-11 91.2 33.7 482 9-519 609-1246(1666)
76 KOG1129 TPR repeat-containing 99.0 1.7E-08 3.8E-13 92.8 16.1 191 328-523 226-425 (478)
77 PRK11189 lipoprotein NlpI; Pro 99.0 2.7E-07 5.8E-12 90.3 25.9 226 269-502 41-280 (296)
78 KOG0985 Vesicle coat protein c 99.0 1.4E-05 3.1E-10 84.4 38.6 221 10-249 485-750 (1666)
79 KOG4162 Predicted calmodulin-b 99.0 5.8E-06 1.3E-10 85.3 34.8 431 50-494 296-789 (799)
80 KOG3616 Selective LIM binding 99.0 3.1E-06 6.7E-11 86.3 32.1 187 302-517 744-932 (1636)
81 KOG1156 N-terminal acetyltrans 99.0 1.8E-05 3.8E-10 80.3 36.9 422 6-453 8-465 (700)
82 KOG1156 N-terminal acetyltrans 99.0 1.2E-05 2.6E-10 81.4 35.1 408 87-524 21-470 (700)
83 COG3063 PilF Tfp pilus assembl 98.9 1.1E-07 2.4E-12 83.8 17.7 162 358-524 37-204 (250)
84 PF12569 NARP1: NMDA receptor- 98.9 1.3E-05 2.9E-10 83.1 34.6 255 256-518 196-516 (517)
85 KOG3616 Selective LIM binding 98.9 3.9E-06 8.4E-11 85.6 29.0 355 112-521 619-1023(1636)
86 PF12569 NARP1: NMDA receptor- 98.9 8.7E-07 1.9E-11 91.7 25.3 255 264-524 14-293 (517)
87 KOG1125 TPR repeat-containing 98.9 5.6E-08 1.2E-12 96.7 14.7 249 300-567 295-556 (579)
88 COG3063 PilF Tfp pilus assembl 98.8 1.6E-06 3.4E-11 76.7 21.0 196 295-494 40-242 (250)
89 KOG1174 Anaphase-promoting com 98.8 2.2E-05 4.9E-10 75.2 29.3 151 231-384 342-499 (564)
90 KOG2376 Signal recognition par 98.8 0.00016 3.4E-09 72.9 35.4 197 11-218 17-254 (652)
91 PF04733 Coatomer_E: Coatomer 98.7 6.4E-07 1.4E-11 86.3 17.5 146 367-521 113-264 (290)
92 KOG0548 Molecular co-chaperone 98.7 2.1E-05 4.5E-10 78.2 27.8 399 81-521 10-454 (539)
93 cd05804 StaR_like StaR_like; a 98.7 2.7E-05 5.7E-10 79.2 29.8 257 262-523 51-337 (355)
94 PRK04841 transcriptional regul 98.7 0.00016 3.6E-09 83.3 39.6 361 115-490 348-762 (903)
95 PF04733 Coatomer_E: Coatomer 98.7 9.9E-07 2.1E-11 85.0 17.6 249 233-493 11-270 (290)
96 KOG1127 TPR repeat-containing 98.7 1.5E-05 3.3E-10 84.4 27.1 507 6-520 492-1102(1238)
97 KOG4340 Uncharacterized conser 98.7 2.2E-05 4.8E-10 71.9 23.5 314 8-352 12-337 (459)
98 PRK04841 transcriptional regul 98.6 6.2E-05 1.3E-09 86.8 33.2 323 200-523 386-761 (903)
99 KOG4340 Uncharacterized conser 98.6 2.8E-05 6.1E-10 71.3 22.9 409 74-521 11-442 (459)
100 KOG0624 dsRNA-activated protei 98.6 7.4E-05 1.6E-09 70.0 25.9 287 229-522 44-370 (504)
101 KOG3617 WD40 and TPR repeat-co 98.6 0.00014 3E-09 75.7 30.2 26 494-519 1146-1171(1416)
102 TIGR03302 OM_YfiO outer membra 98.6 5.9E-06 1.3E-10 78.4 18.7 178 325-522 33-232 (235)
103 PF12854 PPR_1: PPR repeat 98.6 9.3E-08 2E-12 58.5 3.9 33 218-250 2-34 (34)
104 KOG3617 WD40 and TPR repeat-co 98.6 6.6E-05 1.4E-09 78.0 26.4 403 15-476 737-1188(1416)
105 PF12854 PPR_1: PPR repeat 98.6 1.2E-07 2.6E-12 58.0 4.3 33 320-352 2-34 (34)
106 KOG1127 TPR repeat-containing 98.5 9.3E-05 2E-09 78.7 27.9 462 22-519 474-993 (1238)
107 cd05804 StaR_like StaR_like; a 98.5 0.00019 4.1E-09 72.9 30.4 268 254-523 6-294 (355)
108 KOG1070 rRNA processing protei 98.5 1E-05 2.3E-10 88.5 20.9 200 322-525 1455-1666(1710)
109 PRK10370 formate-dependent nit 98.5 5.4E-06 1.2E-10 75.4 16.1 118 404-523 52-174 (198)
110 KOG0624 dsRNA-activated protei 98.5 0.0002 4.4E-09 67.1 25.4 328 146-525 43-397 (504)
111 PRK15359 type III secretion sy 98.5 4.6E-06 1E-10 71.7 13.9 121 377-504 14-137 (144)
112 PLN02789 farnesyltranstransfer 98.5 6.7E-05 1.5E-09 73.4 23.1 163 341-506 88-268 (320)
113 PRK15363 pathogenicity island 98.4 4.5E-06 9.7E-11 70.4 12.3 119 426-567 34-154 (157)
114 KOG1914 mRNA cleavage and poly 98.4 0.0037 8.1E-08 62.6 36.0 435 3-443 17-526 (656)
115 COG5010 TadD Flp pilus assembl 98.3 3.5E-05 7.6E-10 69.9 16.6 135 387-523 62-198 (257)
116 PRK15359 type III secretion sy 98.3 9.5E-06 2.1E-10 69.8 12.5 107 412-523 14-122 (144)
117 PRK10370 formate-dependent nit 98.3 9E-05 2E-09 67.5 19.2 157 331-499 22-184 (198)
118 PRK15179 Vi polysaccharide bio 98.3 6.9E-05 1.5E-09 80.9 20.1 138 355-497 85-226 (694)
119 KOG1128 Uncharacterized conser 98.3 0.00011 2.4E-09 75.8 20.2 189 320-523 393-583 (777)
120 KOG1070 rRNA processing protei 98.3 0.00023 4.9E-09 78.5 23.5 197 292-489 1460-1664(1710)
121 KOG1125 TPR repeat-containing 98.3 6.3E-05 1.4E-09 75.6 17.7 242 263-512 294-561 (579)
122 KOG1128 Uncharacterized conser 98.3 0.00022 4.7E-09 73.7 21.9 215 220-453 395-613 (777)
123 TIGR03302 OM_YfiO outer membra 98.2 0.0001 2.2E-09 69.9 18.5 181 289-490 32-234 (235)
124 KOG0548 Molecular co-chaperone 98.2 0.00053 1.1E-08 68.5 23.1 101 197-300 11-114 (539)
125 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.7E-11 52.9 4.5 34 357-390 1-34 (35)
126 COG5010 TadD Flp pilus assembl 98.2 0.00019 4E-09 65.3 17.1 152 362-516 72-225 (257)
127 KOG3081 Vesicle coat complex C 98.2 0.0022 4.7E-08 58.5 23.4 249 233-493 18-276 (299)
128 KOG2053 Mitochondrial inherita 98.1 0.019 4.1E-07 61.3 38.7 65 461-525 438-505 (932)
129 PRK14720 transcript cleavage f 98.1 0.00057 1.2E-08 74.8 23.4 147 327-504 118-268 (906)
130 COG4783 Putative Zn-dependent 98.1 0.00095 2.1E-08 66.2 22.5 118 401-520 316-435 (484)
131 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 8.8E-11 52.1 4.2 35 39-73 1-35 (35)
132 PLN02789 farnesyltranstransfer 98.1 0.00058 1.3E-08 66.9 20.4 183 335-521 47-249 (320)
133 KOG1914 mRNA cleavage and poly 98.1 0.017 3.6E-07 58.2 35.9 452 32-519 13-536 (656)
134 TIGR02552 LcrH_SycD type III s 98.1 4.7E-05 1E-09 65.0 11.2 100 423-522 12-114 (135)
135 COG4783 Putative Zn-dependent 98.1 0.0007 1.5E-08 67.1 19.8 144 358-523 308-455 (484)
136 PF13812 PPR_3: Pentatricopept 98.0 8.6E-06 1.9E-10 50.2 4.5 33 357-389 2-34 (34)
137 PRK15179 Vi polysaccharide bio 98.0 0.00067 1.5E-08 73.4 21.7 143 320-466 81-229 (694)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00014 3E-09 72.7 15.1 123 393-520 171-295 (395)
139 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0061 1.3E-07 59.6 26.2 108 329-453 181-288 (319)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.6E-09 71.4 16.4 127 327-457 171-298 (395)
141 PF13812 PPR_3: Pentatricopept 98.0 7.4E-06 1.6E-10 50.5 4.0 34 38-71 1-34 (34)
142 TIGR02552 LcrH_SycD type III s 97.9 0.00025 5.4E-09 60.5 13.3 114 378-495 5-121 (135)
143 KOG3060 Uncharacterized conser 97.9 0.0033 7.1E-08 57.0 18.7 167 330-499 57-231 (289)
144 PRK14720 transcript cleavage f 97.8 0.0013 2.8E-08 72.0 19.1 217 2-265 27-268 (906)
145 PF01535 PPR: PPR repeat; Int 97.8 2.8E-05 6E-10 46.6 3.7 31 357-387 1-31 (31)
146 PF12895 Apc3: Anaphase-promot 97.8 2.9E-05 6.3E-10 59.8 4.2 78 440-518 2-83 (84)
147 PF09976 TPR_21: Tetratricopep 97.8 0.00094 2E-08 57.6 14.1 52 466-518 92-143 (145)
148 KOG3081 Vesicle coat complex C 97.7 0.0096 2.1E-07 54.5 20.1 213 223-445 41-259 (299)
149 cd00189 TPR Tetratricopeptide 97.7 0.00025 5.3E-09 55.7 9.4 92 430-521 3-96 (100)
150 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.3E-10 45.8 3.4 31 39-69 1-31 (31)
151 PF13414 TPR_11: TPR repeat; P 97.7 8.2E-05 1.8E-09 54.7 5.6 64 458-521 2-66 (69)
152 PF09976 TPR_21: Tetratricopep 97.7 0.0014 3E-08 56.5 13.8 86 399-485 56-144 (145)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00047 1E-08 57.1 10.4 92 431-522 6-105 (119)
154 PLN03088 SGT1, suppressor of 97.6 0.00067 1.4E-08 68.1 12.4 99 399-500 10-111 (356)
155 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00099 2.2E-08 55.1 11.4 102 394-495 5-112 (119)
156 PF13432 TPR_16: Tetratricopep 97.6 0.00017 3.6E-09 52.3 5.8 58 465-522 3-60 (65)
157 KOG3060 Uncharacterized conser 97.6 0.0066 1.4E-07 55.1 16.6 160 359-522 55-220 (289)
158 PRK10153 DNA-binding transcrip 97.6 0.0031 6.8E-08 66.2 17.1 140 353-494 334-488 (517)
159 PF07079 DUF1347: Protein of u 97.6 0.099 2.2E-06 51.8 32.6 255 15-281 15-325 (549)
160 PF04840 Vps16_C: Vps16, C-ter 97.5 0.1 2.3E-06 51.1 28.3 108 225-349 179-286 (319)
161 COG4235 Cytochrome c biogenesi 97.5 0.00044 9.5E-09 64.7 8.8 105 424-528 153-262 (287)
162 KOG0553 TPR repeat-containing 97.5 0.0009 2E-08 62.2 10.7 99 401-502 91-192 (304)
163 KOG2041 WD40 repeat protein [G 97.5 0.13 2.8E-06 53.5 26.5 220 18-280 675-904 (1189)
164 PRK02603 photosystem I assembl 97.5 0.0011 2.3E-08 59.3 10.7 82 427-508 35-121 (172)
165 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.6E-08 61.1 14.1 133 358-493 3-141 (280)
166 KOG0553 TPR repeat-containing 97.5 0.00077 1.7E-08 62.7 9.3 88 434-521 88-177 (304)
167 KOG0550 Molecular chaperone (D 97.5 0.0023 5E-08 62.0 12.6 267 229-522 55-350 (486)
168 CHL00033 ycf3 photosystem I as 97.4 0.0011 2.4E-08 58.9 10.2 93 427-519 35-139 (168)
169 PLN03088 SGT1, suppressor of 97.4 0.0029 6.4E-08 63.5 13.3 104 362-469 8-113 (356)
170 cd00189 TPR Tetratricopeptide 97.4 0.0022 4.7E-08 50.1 10.1 91 359-452 3-93 (100)
171 PF08579 RPM2: Mitochondrial r 97.4 0.0014 3E-08 51.5 8.1 80 41-120 28-116 (120)
172 PRK02603 photosystem I assembl 97.3 0.0064 1.4E-07 54.2 13.9 130 355-508 34-166 (172)
173 PF14559 TPR_19: Tetratricopep 97.3 0.00029 6.3E-09 51.6 3.8 52 470-521 2-53 (68)
174 PRK15331 chaperone protein Sic 97.3 0.0053 1.2E-07 52.4 11.6 89 433-521 43-133 (165)
175 PF13432 TPR_16: Tetratricopep 97.3 0.00077 1.7E-08 48.7 5.9 61 433-493 3-65 (65)
176 KOG1538 Uncharacterized conser 97.2 0.047 1E-06 56.1 19.5 202 192-459 602-806 (1081)
177 PF13431 TPR_17: Tetratricopep 97.2 0.0002 4.3E-09 43.6 1.8 33 482-514 2-34 (34)
178 PF08579 RPM2: Mitochondrial r 97.2 0.0065 1.4E-07 47.8 10.4 81 256-337 27-116 (120)
179 PF13371 TPR_9: Tetratricopept 97.2 0.00081 1.8E-08 50.0 5.5 57 467-523 3-59 (73)
180 PF12895 Apc3: Anaphase-promot 97.2 0.001 2.2E-08 51.1 6.0 80 369-452 2-83 (84)
181 PF13281 DUF4071: Domain of un 97.2 0.054 1.2E-06 53.6 19.0 160 330-492 146-338 (374)
182 CHL00033 ycf3 photosystem I as 97.2 0.02 4.4E-07 50.7 15.1 79 357-438 36-117 (168)
183 PF05843 Suf: Suppressor of fo 97.1 0.0038 8.2E-08 60.4 10.9 83 370-453 50-133 (280)
184 KOG2053 Mitochondrial inherita 97.1 0.55 1.2E-05 50.8 41.2 217 17-251 20-254 (932)
185 PF14559 TPR_19: Tetratricopep 97.1 0.00088 1.9E-08 49.0 4.5 48 404-453 4-51 (68)
186 PF10037 MRP-S27: Mitochondria 97.1 0.0036 7.8E-08 63.0 10.0 118 37-154 65-186 (429)
187 PF10037 MRP-S27: Mitochondria 97.0 0.0073 1.6E-07 60.9 11.8 120 105-236 63-186 (429)
188 COG4700 Uncharacterized protei 97.0 0.093 2E-06 45.4 16.5 130 387-521 85-221 (251)
189 PF14938 SNAP: Soluble NSF att 97.0 0.061 1.3E-06 52.3 18.1 123 332-454 121-264 (282)
190 PRK10153 DNA-binding transcrip 97.0 0.018 3.9E-07 60.6 14.7 134 386-523 332-483 (517)
191 PF06239 ECSIT: Evolutionarily 97.0 0.01 2.2E-07 53.0 10.6 97 345-442 34-153 (228)
192 PF14938 SNAP: Soluble NSF att 96.9 0.2 4.4E-06 48.7 20.4 215 238-492 30-267 (282)
193 PRK10866 outer membrane biogen 96.9 0.19 4E-06 47.5 19.4 55 229-283 38-98 (243)
194 COG4700 Uncharacterized protei 96.8 0.19 4.1E-06 43.6 16.7 99 286-384 85-188 (251)
195 KOG2280 Vacuolar assembly/sort 96.8 0.89 1.9E-05 48.2 32.8 332 80-452 444-795 (829)
196 PF13414 TPR_11: TPR repeat; P 96.8 0.0026 5.6E-08 46.6 5.0 65 426-490 2-69 (69)
197 PF12688 TPR_5: Tetratrico pep 96.8 0.038 8.3E-07 45.2 12.1 91 362-452 7-100 (120)
198 PF06239 ECSIT: Evolutionarily 96.8 0.0066 1.4E-07 54.1 7.9 100 23-123 31-153 (228)
199 PRK15363 pathogenicity island 96.7 0.14 3.1E-06 43.6 15.3 92 330-422 40-134 (157)
200 KOG1538 Uncharacterized conser 96.7 0.25 5.4E-06 51.1 19.5 58 75-135 600-659 (1081)
201 KOG1130 Predicted G-alpha GTPa 96.7 0.012 2.5E-07 57.1 9.6 126 394-519 198-341 (639)
202 PRK10803 tol-pal system protei 96.7 0.011 2.3E-07 56.3 9.5 93 429-521 145-245 (263)
203 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0063 1.4E-07 60.8 8.0 62 427-488 75-141 (453)
204 KOG2280 Vacuolar assembly/sort 96.7 1.2 2.5E-05 47.4 26.6 322 179-518 423-795 (829)
205 COG3898 Uncharacterized membra 96.7 0.73 1.6E-05 45.0 28.1 240 265-521 131-391 (531)
206 PF07079 DUF1347: Protein of u 96.6 0.93 2E-05 45.3 32.9 420 85-520 18-522 (549)
207 PF13428 TPR_14: Tetratricopep 96.6 0.0037 7.9E-08 40.9 3.8 42 460-501 2-43 (44)
208 KOG2796 Uncharacterized conser 96.5 0.14 2.9E-06 47.0 14.7 169 226-397 139-325 (366)
209 PF12688 TPR_5: Tetratrico pep 96.5 0.078 1.7E-06 43.4 12.3 91 260-351 7-101 (120)
210 KOG2796 Uncharacterized conser 96.5 0.28 6E-06 45.1 16.2 234 253-494 68-321 (366)
211 PRK10866 outer membrane biogen 96.4 0.94 2E-05 42.7 21.0 191 252-452 30-237 (243)
212 KOG0543 FKBP-type peptidyl-pro 96.3 0.026 5.6E-07 55.2 9.7 84 459-568 257-340 (397)
213 KOG1130 Predicted G-alpha GTPa 96.3 0.14 3.1E-06 49.9 13.9 153 358-510 197-372 (639)
214 PF13371 TPR_9: Tetratricopept 96.2 0.016 3.4E-07 42.9 6.1 64 435-498 3-68 (73)
215 PF03704 BTAD: Bacterial trans 96.1 0.083 1.8E-06 45.5 11.2 61 461-521 64-124 (146)
216 PRK10803 tol-pal system protei 96.0 0.1 2.2E-06 49.7 11.9 100 394-493 146-251 (263)
217 KOG2041 WD40 repeat protein [G 96.0 2.6 5.6E-05 44.5 25.8 88 287-383 849-950 (1189)
218 PF13424 TPR_12: Tetratricopep 96.0 0.01 2.2E-07 44.7 4.1 60 461-520 7-73 (78)
219 PF12921 ATP13: Mitochondrial 95.9 0.092 2E-06 43.5 9.9 79 391-469 2-98 (126)
220 PF12921 ATP13: Mitochondrial 95.9 0.11 2.3E-06 43.1 9.8 98 325-438 2-99 (126)
221 PF13424 TPR_12: Tetratricopep 95.8 0.012 2.5E-07 44.3 3.8 59 429-487 7-74 (78)
222 PF09205 DUF1955: Domain of un 95.7 0.9 1.9E-05 37.2 13.8 140 367-525 13-152 (161)
223 PF03704 BTAD: Bacterial trans 95.5 0.16 3.4E-06 43.8 10.3 69 360-429 66-138 (146)
224 KOG0550 Molecular chaperone (D 95.4 0.87 1.9E-05 44.9 15.5 276 196-500 57-361 (486)
225 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.3 7.2E-05 41.4 28.7 83 3-87 39-123 (660)
226 KOG3941 Intermediate in Toll s 95.3 0.16 3.4E-06 47.1 9.6 109 344-453 53-185 (406)
227 COG4235 Cytochrome c biogenesi 95.2 0.35 7.5E-06 45.7 11.9 30 355-384 155-184 (287)
228 KOG1941 Acetylcholine receptor 95.2 0.45 9.7E-06 45.9 12.6 122 397-518 128-271 (518)
229 COG0457 NrfG FOG: TPR repeat [ 95.2 2.6 5.6E-05 38.9 26.5 195 325-521 59-264 (291)
230 PF13525 YfiO: Outer membrane 95.2 1.7 3.7E-05 39.7 16.5 83 360-446 114-197 (203)
231 KOG0543 FKBP-type peptidyl-pro 95.1 0.2 4.2E-06 49.3 10.3 138 363-522 215-355 (397)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.13 2.9E-06 51.7 9.0 61 390-453 74-138 (453)
233 KOG2066 Vacuolar assembly/sort 95.0 6.5 0.00014 42.3 24.3 50 108-159 392-441 (846)
234 KOG1258 mRNA processing protei 95.0 5.6 0.00012 41.5 28.6 412 37-508 44-490 (577)
235 PRK11906 transcriptional regul 94.9 0.41 8.8E-06 48.4 12.2 61 458-518 337-397 (458)
236 COG5107 RNA14 Pre-mRNA 3'-end 94.9 4.7 0.0001 40.4 33.3 134 356-493 397-536 (660)
237 COG1729 Uncharacterized protei 94.8 0.16 3.6E-06 47.2 8.6 91 429-522 144-244 (262)
238 COG3898 Uncharacterized membra 94.7 4.8 0.0001 39.6 26.4 310 124-462 69-398 (531)
239 PF04184 ST7: ST7 protein; In 94.6 2.3 5E-05 43.3 16.4 101 393-493 261-380 (539)
240 KOG4555 TPR repeat-containing 94.5 0.28 6.1E-06 39.8 8.0 90 435-524 51-146 (175)
241 COG3118 Thioredoxin domain-con 94.5 2.2 4.7E-05 40.4 15.0 121 400-523 143-266 (304)
242 PF13525 YfiO: Outer membrane 94.4 3.9 8.4E-05 37.4 21.5 47 433-479 147-198 (203)
243 KOG3941 Intermediate in Toll s 94.3 0.19 4.2E-06 46.5 7.6 111 25-136 53-187 (406)
244 PF13281 DUF4071: Domain of un 94.3 6.3 0.00014 39.4 18.5 74 226-300 144-227 (374)
245 PF00515 TPR_1: Tetratricopept 94.2 0.071 1.5E-06 32.3 3.4 32 460-491 2-33 (34)
246 PF13512 TPR_18: Tetratricopep 94.2 0.85 1.8E-05 38.3 10.6 58 436-493 19-81 (142)
247 KOG1920 IkappaB kinase complex 94.2 9.9 0.00021 43.1 21.3 18 436-453 974-991 (1265)
248 PRK11906 transcriptional regul 94.0 2.3 5E-05 43.1 15.0 141 372-516 274-430 (458)
249 KOG2610 Uncharacterized conser 94.0 1.7 3.6E-05 41.7 13.1 112 338-453 116-235 (491)
250 PF04053 Coatomer_WDAD: Coatom 93.9 1 2.3E-05 46.4 13.0 106 394-523 298-403 (443)
251 COG0457 NrfG FOG: TPR repeat [ 93.9 5.2 0.00011 36.8 25.5 196 292-491 61-268 (291)
252 smart00299 CLH Clathrin heavy 93.9 3.6 7.8E-05 34.9 15.0 81 330-417 12-95 (140)
253 PF07719 TPR_2: Tetratricopept 93.8 0.12 2.7E-06 31.1 4.0 32 461-492 3-34 (34)
254 smart00299 CLH Clathrin heavy 93.8 3.8 8.2E-05 34.8 15.5 85 77-167 11-95 (140)
255 COG4105 ComL DNA uptake lipopr 93.6 6.3 0.00014 36.7 17.3 141 358-522 36-196 (254)
256 KOG2610 Uncharacterized conser 93.5 0.78 1.7E-05 43.8 10.2 159 368-529 115-283 (491)
257 COG1729 Uncharacterized protei 93.5 0.9 2E-05 42.5 10.5 92 359-453 145-241 (262)
258 PF10300 DUF3808: Protein of u 93.1 4.9 0.00011 42.2 16.7 158 361-521 193-375 (468)
259 PF13512 TPR_18: Tetratricopep 93.1 2.5 5.4E-05 35.5 11.5 112 365-493 19-133 (142)
260 PF04053 Coatomer_WDAD: Coatom 93.0 5.7 0.00012 41.1 16.6 159 149-351 269-428 (443)
261 PF09205 DUF1955: Domain of un 92.9 4.1 8.9E-05 33.5 11.9 118 199-321 13-151 (161)
262 PF04184 ST7: ST7 protein; In 92.6 2.8 6E-05 42.8 13.0 66 463-528 263-330 (539)
263 PF07035 Mic1: Colon cancer-as 92.5 4.6 0.0001 35.2 12.8 134 58-217 14-149 (167)
264 KOG1585 Protein required for f 92.4 8.8 0.00019 35.4 16.9 199 293-516 34-250 (308)
265 COG3118 Thioredoxin domain-con 92.3 11 0.00023 36.0 16.1 141 365-508 143-287 (304)
266 KOG4234 TPR repeat-containing 92.3 0.4 8.8E-06 42.2 6.1 88 436-523 104-198 (271)
267 PF09613 HrpB1_HrpK: Bacterial 92.1 4.9 0.00011 34.6 12.2 91 398-491 17-109 (160)
268 KOG2114 Vacuolar assembly/sort 91.7 8.5 0.00018 41.9 15.9 176 293-484 337-515 (933)
269 PF10300 DUF3808: Protein of u 91.6 9.7 0.00021 40.0 16.7 80 304-385 247-334 (468)
270 PF08631 SPO22: Meiosis protei 91.5 14 0.00031 35.7 22.6 16 469-484 256-271 (278)
271 PRK15331 chaperone protein Sic 91.4 4.2 9.2E-05 35.1 11.2 19 434-452 112-130 (165)
272 KOG1585 Protein required for f 91.3 12 0.00026 34.6 14.3 146 325-483 91-251 (308)
273 COG4785 NlpI Lipoprotein NlpI, 91.1 9.6 0.00021 34.4 13.2 30 493-522 237-266 (297)
274 PF02259 FAT: FAT domain; Int 90.9 19 0.00041 36.1 19.8 148 355-504 145-303 (352)
275 PF13170 DUF4003: Protein of u 90.6 10 0.00023 36.8 14.6 63 373-436 160-226 (297)
276 PRK09687 putative lyase; Provi 90.2 19 0.0004 34.9 23.5 237 31-300 31-277 (280)
277 PF13181 TPR_8: Tetratricopept 90.1 0.41 8.8E-06 28.8 3.0 31 461-491 3-33 (34)
278 COG3629 DnrI DNA-binding trans 89.9 2.3 5E-05 40.4 9.2 75 326-400 154-236 (280)
279 KOG1941 Acetylcholine receptor 89.9 20 0.00044 35.1 15.2 216 202-417 20-272 (518)
280 KOG4555 TPR repeat-containing 89.8 7.8 0.00017 31.8 10.6 50 335-384 53-105 (175)
281 PF09613 HrpB1_HrpK: Bacterial 89.2 1.5 3.2E-05 37.7 6.6 54 470-523 21-74 (160)
282 KOG0890 Protein kinase of the 89.2 68 0.0015 39.9 30.5 279 226-524 1423-1733(2382)
283 PF10602 RPN7: 26S proteasome 89.1 9.4 0.0002 33.9 12.1 94 358-453 38-139 (177)
284 PF13176 TPR_7: Tetratricopept 89.0 0.96 2.1E-05 27.7 4.1 26 358-383 1-26 (36)
285 COG4105 ComL DNA uptake lipopr 88.7 21 0.00045 33.4 19.5 182 323-521 33-232 (254)
286 PF13170 DUF4003: Protein of u 88.5 7 0.00015 38.0 11.7 127 89-229 78-223 (297)
287 PF02259 FAT: FAT domain; Int 88.4 17 0.00038 36.4 15.4 67 458-524 145-215 (352)
288 PF13176 TPR_7: Tetratricopept 88.1 0.66 1.4E-05 28.5 2.9 23 462-484 2-24 (36)
289 KOG2066 Vacuolar assembly/sort 88.1 44 0.00096 36.4 22.9 54 13-66 363-420 (846)
290 KOG2114 Vacuolar assembly/sort 87.9 47 0.001 36.5 29.7 54 433-487 711-764 (933)
291 KOG4648 Uncharacterized conser 87.5 0.96 2.1E-05 43.3 4.8 113 399-518 105-220 (536)
292 TIGR02561 HrpB1_HrpK type III 87.3 1.9 4.2E-05 36.3 6.0 53 471-523 22-74 (153)
293 PF13428 TPR_14: Tetratricopep 86.4 2.2 4.7E-05 27.6 4.8 28 358-385 3-30 (44)
294 COG4649 Uncharacterized protei 86.1 15 0.00032 32.0 10.6 50 438-487 143-195 (221)
295 KOG1586 Protein required for f 85.9 28 0.00061 32.0 13.1 23 470-492 165-187 (288)
296 PF00515 TPR_1: Tetratricopept 85.9 1.7 3.7E-05 26.0 3.9 27 358-384 3-29 (34)
297 KOG0276 Vesicle coat complex C 85.5 12 0.00025 39.3 11.5 149 337-519 598-747 (794)
298 PF10602 RPN7: 26S proteasome 85.3 7.8 0.00017 34.4 9.4 97 39-137 37-142 (177)
299 KOG4570 Uncharacterized conser 84.4 10 0.00022 36.3 9.8 99 217-320 58-165 (418)
300 COG3629 DnrI DNA-binding trans 84.3 4.3 9.4E-05 38.7 7.6 61 461-521 155-215 (280)
301 TIGR02508 type_III_yscG type I 84.1 18 0.00039 28.2 9.3 87 306-396 21-107 (115)
302 PF07721 TPR_4: Tetratricopept 84.0 1.3 2.9E-05 24.7 2.6 24 494-517 2-25 (26)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 83.4 9.8 0.00021 29.4 7.6 62 372-435 23-84 (103)
304 PF07719 TPR_2: Tetratricopept 83.3 1.8 4E-05 25.7 3.2 28 494-521 2-29 (34)
305 PF02284 COX5A: Cytochrome c o 83.1 8.8 0.00019 30.0 7.3 60 374-435 28-87 (108)
306 KOG1586 Protein required for f 82.8 39 0.00085 31.1 16.1 56 437-492 164-228 (288)
307 KOG4570 Uncharacterized conser 82.7 4.4 9.6E-05 38.6 6.7 98 37-136 63-163 (418)
308 TIGR02561 HrpB1_HrpK type III 82.7 24 0.00051 30.0 10.3 84 402-488 21-106 (153)
309 PRK11619 lytic murein transgly 82.3 84 0.0018 34.6 33.6 263 224-500 100-383 (644)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 7.7 0.00017 29.9 6.6 62 53-116 22-84 (103)
311 KOG4648 Uncharacterized conser 82.1 6.1 0.00013 38.1 7.5 86 363-459 104-198 (536)
312 PF04097 Nic96: Nup93/Nic96; 79.8 1E+02 0.0022 33.9 23.7 61 107-168 111-179 (613)
313 PRK09687 putative lyase; Provi 79.8 61 0.0013 31.4 26.8 61 220-280 34-98 (280)
314 PF14853 Fis1_TPR_C: Fis1 C-te 79.8 3.8 8.2E-05 27.8 3.9 33 464-496 6-38 (53)
315 PRK10941 hypothetical protein; 79.7 12 0.00025 35.8 8.7 62 461-522 183-244 (269)
316 PF13374 TPR_10: Tetratricopep 79.7 3 6.5E-05 26.2 3.5 28 494-521 3-30 (42)
317 PF02284 COX5A: Cytochrome c o 79.5 8.6 0.00019 30.0 6.2 62 54-116 26-87 (108)
318 PF13431 TPR_17: Tetratricopep 79.5 1.4 3E-05 26.6 1.7 24 3-26 10-33 (34)
319 PF13374 TPR_10: Tetratricopep 79.4 4.3 9.4E-05 25.4 4.2 28 357-384 3-30 (42)
320 PF00637 Clathrin: Region in C 79.3 1.6 3.4E-05 37.3 2.6 86 78-168 12-97 (143)
321 PF13174 TPR_6: Tetratricopept 79.3 2.6 5.6E-05 24.8 2.9 25 467-491 8-32 (33)
322 COG2976 Uncharacterized protei 79.1 47 0.001 29.7 13.7 115 374-492 70-192 (207)
323 KOG1258 mRNA processing protei 79.0 92 0.002 33.0 29.2 129 7-136 46-179 (577)
324 COG2909 MalT ATP-dependent tra 78.8 1.2E+02 0.0025 34.0 20.0 187 336-526 426-651 (894)
325 smart00028 TPR Tetratricopepti 78.2 3.7 8E-05 23.3 3.4 29 462-490 4-32 (34)
326 PF13181 TPR_8: Tetratricopept 78.1 4.1 8.9E-05 24.2 3.5 28 494-521 2-29 (34)
327 PF00637 Clathrin: Region in C 77.5 1.6 3.6E-05 37.2 2.2 85 194-281 13-97 (143)
328 PF11207 DUF2989: Protein of u 76.5 13 0.00027 33.4 7.3 70 444-513 123-198 (203)
329 KOG3807 Predicted membrane pro 76.4 21 0.00046 34.4 9.1 116 362-497 281-400 (556)
330 PRK15180 Vi polysaccharide bio 76.2 18 0.00039 36.7 9.0 118 369-491 302-423 (831)
331 PF04910 Tcf25: Transcriptiona 76.2 88 0.0019 31.6 14.3 64 458-521 99-167 (360)
332 PF13174 TPR_6: Tetratricopept 75.5 3.2 6.9E-05 24.4 2.5 28 495-522 2-29 (33)
333 COG1747 Uncharacterized N-term 75.2 1.1E+02 0.0024 31.9 19.2 93 253-351 65-157 (711)
334 PF07721 TPR_4: Tetratricopept 75.2 5.6 0.00012 22.1 3.3 21 431-451 5-25 (26)
335 KOG1464 COP9 signalosome, subu 75.1 53 0.0011 30.9 11.0 177 338-514 40-252 (440)
336 PF14853 Fis1_TPR_C: Fis1 C-te 74.7 16 0.00034 24.8 5.8 26 496-521 4-29 (53)
337 PF08631 SPO22: Meiosis protei 74.0 88 0.0019 30.2 23.8 19 501-519 254-272 (278)
338 PRK13800 putative oxidoreducta 73.8 1.8E+02 0.0039 33.7 24.1 254 244-520 625-879 (897)
339 COG3947 Response regulator con 73.8 11 0.00024 35.7 6.5 59 463-521 283-341 (361)
340 KOG1464 COP9 signalosome, subu 73.3 83 0.0018 29.6 13.9 231 236-472 40-317 (440)
341 PF10345 Cohesin_load: Cohesin 72.8 1.5E+02 0.0033 32.5 35.0 174 37-214 58-251 (608)
342 PF11207 DUF2989: Protein of u 72.7 32 0.0007 31.0 8.9 73 373-446 123-197 (203)
343 PF13929 mRNA_stabil: mRNA sta 72.7 92 0.002 29.9 15.4 57 322-378 199-260 (292)
344 PF09477 Type_III_YscG: Bacter 72.6 46 0.001 26.4 9.1 87 305-395 21-107 (116)
345 KOG1920 IkappaB kinase complex 72.3 2E+02 0.0043 33.5 23.4 107 336-453 919-1025(1265)
346 PF14561 TPR_20: Tetratricopep 72.1 7.9 0.00017 29.8 4.5 45 479-523 8-52 (90)
347 PF06552 TOM20_plant: Plant sp 72.1 33 0.00071 30.3 8.5 44 475-525 96-139 (186)
348 PF13762 MNE1: Mitochondrial s 70.6 20 0.00043 30.4 6.8 76 9-85 42-127 (145)
349 COG4649 Uncharacterized protei 70.3 75 0.0016 27.9 14.2 53 367-419 143-195 (221)
350 KOG1308 Hsp70-interacting prot 70.1 2.7 5.9E-05 40.5 1.8 58 467-524 156-213 (377)
351 KOG4642 Chaperone-dependent E3 69.6 14 0.00031 34.0 6.0 79 441-519 24-104 (284)
352 COG4455 ImpE Protein of avirul 69.6 15 0.00033 33.2 6.1 64 430-493 4-69 (273)
353 TIGR03504 FimV_Cterm FimV C-te 68.9 7.7 0.00017 25.1 3.1 27 497-523 3-29 (44)
354 PF04097 Nic96: Nup93/Nic96; 67.5 1.6E+02 0.0035 32.3 14.9 41 227-267 115-158 (613)
355 PF07035 Mic1: Colon cancer-as 67.4 87 0.0019 27.4 16.5 20 331-350 95-114 (167)
356 PRK15180 Vi polysaccharide bio 66.7 1.1E+02 0.0023 31.6 11.8 124 403-529 301-427 (831)
357 KOG4279 Serine/threonine prote 66.7 25 0.00055 37.9 8.0 150 330-492 206-399 (1226)
358 KOG3364 Membrane protein invol 66.0 62 0.0013 27.0 8.4 61 461-521 34-99 (149)
359 PF06552 TOM20_plant: Plant sp 66.0 6.5 0.00014 34.5 3.1 34 475-508 51-84 (186)
360 PF07163 Pex26: Pex26 protein; 65.3 71 0.0015 30.4 9.7 88 363-453 90-184 (309)
361 KOG0545 Aryl-hydrocarbon recep 65.1 34 0.00074 31.7 7.5 55 467-521 238-292 (329)
362 PRK12798 chemotaxis protein; R 64.2 1.7E+02 0.0037 29.7 22.0 181 338-521 125-323 (421)
363 PF09986 DUF2225: Uncharacteri 63.7 36 0.00079 31.3 7.8 63 461-523 120-195 (214)
364 PF04910 Tcf25: Transcriptiona 63.1 1.7E+02 0.0038 29.5 16.9 91 398-491 110-225 (360)
365 COG4785 NlpI Lipoprotein NlpI, 63.1 1.2E+02 0.0027 27.7 13.7 64 104-168 94-160 (297)
366 PF09670 Cas_Cas02710: CRISPR- 62.3 1.2E+02 0.0025 31.0 11.9 121 367-488 142-270 (379)
367 KOG4234 TPR repeat-containing 62.3 87 0.0019 28.2 9.2 60 435-494 142-203 (271)
368 PRK09169 hypothetical protein; 61.9 4.3E+02 0.0093 33.6 42.8 473 38-519 122-692 (2316)
369 KOG0276 Vesicle coat complex C 61.4 72 0.0016 33.8 9.9 44 120-167 649-692 (794)
370 PF10345 Cohesin_load: Cohesin 61.4 2.6E+02 0.0055 30.8 38.1 194 37-249 29-251 (608)
371 KOG2063 Vacuolar assembly/sort 60.8 2.8E+02 0.006 31.6 14.9 27 40-66 506-532 (877)
372 COG3947 Response regulator con 60.7 1.6E+02 0.0035 28.3 14.2 58 327-384 281-341 (361)
373 TIGR03504 FimV_Cterm FimV C-te 60.6 23 0.0005 22.9 4.2 24 362-385 5-28 (44)
374 PF11768 DUF3312: Protein of u 59.9 90 0.0019 32.9 10.4 55 330-384 413-472 (545)
375 KOG1550 Extracellular protein 59.7 2.6E+02 0.0056 30.3 22.8 144 371-521 379-537 (552)
376 COG4455 ImpE Protein of avirul 59.5 1.4E+02 0.0031 27.3 11.1 126 358-492 3-138 (273)
377 smart00386 HAT HAT (Half-A-TPR 59.2 14 0.0003 21.3 3.0 29 473-501 1-29 (33)
378 PHA02875 ankyrin repeat protei 57.3 2.2E+02 0.0047 29.3 13.4 199 199-413 10-221 (413)
379 PF07163 Pex26: Pex26 protein; 56.6 1.3E+02 0.0029 28.7 9.9 86 261-348 90-181 (309)
380 PF11846 DUF3366: Domain of un 56.3 41 0.00089 30.4 6.8 34 457-490 142-175 (193)
381 KOG4507 Uncharacterized conser 55.9 28 0.00061 36.4 6.0 96 404-502 620-719 (886)
382 PF13762 MNE1: Mitochondrial s 54.6 1.4E+02 0.0029 25.5 10.8 76 329-404 43-128 (145)
383 PF12968 DUF3856: Domain of Un 54.6 1.1E+02 0.0023 25.0 7.7 62 458-519 54-126 (144)
384 PF10579 Rapsyn_N: Rapsyn N-te 54.2 38 0.00082 25.2 4.8 46 403-448 18-64 (80)
385 KOG1498 26S proteasome regulat 53.8 2.5E+02 0.0054 28.3 14.9 200 338-543 25-262 (439)
386 KOG0376 Serine-threonine phosp 53.3 12 0.00027 38.0 3.0 95 398-495 11-108 (476)
387 PF10579 Rapsyn_N: Rapsyn N-te 53.1 49 0.0011 24.6 5.2 46 368-413 18-65 (80)
388 PF14863 Alkyl_sulf_dimr: Alky 52.9 47 0.001 28.1 6.0 62 444-508 58-119 (141)
389 KOG0551 Hsp90 co-chaperone CNS 52.6 62 0.0013 31.6 7.3 92 428-519 82-179 (390)
390 PF10366 Vps39_1: Vacuolar sor 52.4 1E+02 0.0022 24.7 7.6 27 358-384 41-67 (108)
391 COG1747 Uncharacterized N-term 51.9 3.1E+02 0.0067 28.8 20.9 160 287-453 63-231 (711)
392 KOG0292 Vesicle coat complex C 51.1 22 0.00047 39.2 4.5 95 369-487 606-700 (1202)
393 KOG2297 Predicted translation 50.9 2.4E+02 0.0053 27.3 14.0 157 334-513 175-341 (412)
394 KOG4077 Cytochrome c oxidase, 50.6 1E+02 0.0023 25.3 7.2 60 374-435 67-126 (149)
395 cd08819 CARD_MDA5_2 Caspase ac 50.6 1.1E+02 0.0024 23.3 7.0 39 337-376 48-86 (88)
396 COG2976 Uncharacterized protei 49.5 2E+02 0.0043 25.9 14.0 87 300-386 99-189 (207)
397 PF10366 Vps39_1: Vacuolar sor 49.3 1.4E+02 0.003 24.0 8.6 27 255-281 40-66 (108)
398 PF12862 Apc5: Anaphase-promot 48.8 40 0.00087 26.1 4.8 52 470-521 9-69 (94)
399 PF04190 DUF410: Protein of un 47.7 2.6E+02 0.0056 26.7 15.8 81 222-318 89-169 (260)
400 TIGR02508 type_III_yscG type I 47.1 1.4E+02 0.0031 23.5 8.6 85 204-293 21-105 (115)
401 cd00280 TRFH Telomeric Repeat 46.8 91 0.002 27.6 6.8 28 466-494 118-145 (200)
402 KOG0403 Neoplastic transformat 46.5 3.5E+02 0.0075 27.8 19.1 58 329-386 513-573 (645)
403 COG4976 Predicted methyltransf 46.3 29 0.00062 31.8 3.9 56 437-492 5-62 (287)
404 PF11848 DUF3368: Domain of un 46.0 80 0.0017 20.8 5.1 33 367-399 13-45 (48)
405 PF11846 DUF3366: Domain of un 45.4 68 0.0015 28.9 6.5 53 401-453 118-170 (193)
406 KOG2422 Uncharacterized conser 44.6 3.5E+02 0.0076 28.8 11.6 123 401-523 248-408 (665)
407 PRK10564 maltose regulon perip 44.3 47 0.001 32.0 5.2 41 358-398 259-299 (303)
408 PHA02875 ankyrin repeat protei 44.1 3.8E+02 0.0081 27.6 16.0 66 64-133 21-90 (413)
409 PF14689 SPOB_a: Sensor_kinase 43.6 68 0.0015 22.6 4.8 29 390-418 22-50 (62)
410 KOG0890 Protein kinase of the 43.4 8.3E+02 0.018 31.4 28.0 154 82-260 1392-1552(2382)
411 PRK13342 recombination factor 42.8 4E+02 0.0087 27.5 15.0 101 287-405 173-279 (413)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 42.6 1.8E+02 0.004 24.0 8.0 42 477-518 81-124 (126)
413 PF11768 DUF3312: Protein of u 42.2 1.9E+02 0.004 30.6 9.4 55 227-281 412-471 (545)
414 KOG4642 Chaperone-dependent E3 42.0 2.8E+02 0.0061 25.9 9.4 117 335-453 20-143 (284)
415 KOG2063 Vacuolar assembly/sort 41.6 5.9E+02 0.013 29.2 16.7 116 6-121 504-639 (877)
416 COG4941 Predicted RNA polymera 40.5 3.7E+02 0.0081 26.5 10.8 119 371-494 271-400 (415)
417 KOG4507 Uncharacterized conser 40.3 1.2E+02 0.0026 32.1 7.6 134 387-523 567-706 (886)
418 KOG4077 Cytochrome c oxidase, 39.5 1.2E+02 0.0027 24.9 6.0 42 59-100 70-111 (149)
419 PF07720 TPR_3: Tetratricopept 39.3 58 0.0013 20.0 3.4 27 464-490 6-34 (36)
420 PF11663 Toxin_YhaV: Toxin wit 39.3 41 0.00088 28.0 3.4 29 52-82 109-137 (140)
421 COG5191 Uncharacterized conser 39.1 59 0.0013 31.3 4.9 78 424-501 104-184 (435)
422 PF11848 DUF3368: Domain of un 38.8 66 0.0014 21.2 3.9 30 50-79 14-43 (48)
423 cd00280 TRFH Telomeric Repeat 38.8 1.6E+02 0.0036 26.1 7.1 38 433-470 117-154 (200)
424 cd08819 CARD_MDA5_2 Caspase ac 38.4 1.8E+02 0.0039 22.2 6.5 66 207-274 21-86 (88)
425 PF04034 DUF367: Domain of unk 37.2 2.4E+02 0.0052 23.3 7.5 59 427-485 66-125 (127)
426 PRK11619 lytic murein transgly 36.9 6.2E+02 0.013 28.0 38.2 183 328-526 315-509 (644)
427 PF13934 ELYS: Nuclear pore co 36.8 3.5E+02 0.0076 25.1 12.5 72 397-472 114-185 (226)
428 cd08326 CARD_CASP9 Caspase act 36.6 1.6E+02 0.0034 22.4 6.1 40 336-375 41-80 (84)
429 PF14689 SPOB_a: Sensor_kinase 36.4 57 0.0012 23.0 3.5 30 355-384 22-51 (62)
430 PF14561 TPR_20: Tetratricopep 36.1 2E+02 0.0043 22.1 7.8 62 458-519 21-85 (90)
431 PRK10941 hypothetical protein; 35.9 4E+02 0.0088 25.6 10.5 70 360-431 185-255 (269)
432 PRK09169 hypothetical protein; 35.8 1.1E+03 0.023 30.4 47.2 506 6-520 162-777 (2316)
433 PF11663 Toxin_YhaV: Toxin wit 35.1 34 0.00075 28.4 2.4 31 369-401 108-138 (140)
434 KOG3824 Huntingtin interacting 34.8 64 0.0014 31.0 4.5 62 437-498 126-189 (472)
435 KOG2659 LisH motif-containing 34.7 3.6E+02 0.0079 24.9 9.0 55 397-452 70-128 (228)
436 KOG0292 Vesicle coat complex C 34.4 3.4E+02 0.0074 30.6 10.1 47 448-494 1071-1119(1202)
437 PRK08691 DNA polymerase III su 34.3 5.8E+02 0.012 28.4 12.0 99 271-390 181-279 (709)
438 PRK13800 putative oxidoreducta 33.2 8.3E+02 0.018 28.4 26.4 268 128-436 624-893 (897)
439 KOG3824 Huntingtin interacting 33.2 69 0.0015 30.8 4.4 53 402-457 127-181 (472)
440 PF08967 DUF1884: Domain of un 32.6 1.6E+02 0.0035 22.0 5.2 27 552-578 7-33 (85)
441 TIGR02710 CRISPR-associated pr 32.3 5.5E+02 0.012 26.1 12.8 29 365-393 139-167 (380)
442 COG4976 Predicted methyltransf 31.8 90 0.0019 28.8 4.7 56 469-524 5-60 (287)
443 KOG0403 Neoplastic transformat 31.6 6E+02 0.013 26.3 22.9 26 256-281 347-372 (645)
444 PF12926 MOZART2: Mitotic-spin 31.5 2.4E+02 0.0051 21.5 6.3 62 71-134 8-69 (88)
445 COG0790 FOG: TPR repeat, SEL1 31.3 4.8E+02 0.011 25.1 17.0 31 474-507 206-236 (292)
446 COG5108 RPO41 Mitochondrial DN 31.3 2E+02 0.0042 31.1 7.6 89 9-100 31-130 (1117)
447 PF06957 COPI_C: Coatomer (COP 31.2 1.5E+02 0.0033 30.4 6.8 44 449-492 288-333 (422)
448 PF12069 DUF3549: Protein of u 31.1 5.4E+02 0.012 25.6 10.8 88 12-103 172-260 (340)
449 KOG0991 Replication factor C, 31.1 4.5E+02 0.0097 24.6 11.4 135 326-465 131-279 (333)
450 KOG1524 WD40 repeat-containing 30.5 2.4E+02 0.0053 29.5 7.9 89 426-517 572-668 (737)
451 PRK11639 zinc uptake transcrip 30.2 2.1E+02 0.0045 25.2 6.8 36 88-123 40-75 (169)
452 PF07575 Nucleopor_Nup85: Nup8 30.1 7.5E+02 0.016 26.9 19.3 59 290-350 405-463 (566)
453 PF14669 Asp_Glu_race_2: Putat 30.0 4.1E+02 0.009 23.9 13.7 58 395-453 136-207 (233)
454 PF11817 Foie-gras_1: Foie gra 29.4 1.9E+02 0.0041 27.3 7.0 6 471-476 230-235 (247)
455 PF11525 CopK: Copper resistan 29.4 22 0.00048 25.2 0.5 22 620-641 8-29 (73)
456 PF04190 DUF410: Protein of un 28.9 5.2E+02 0.011 24.7 16.4 159 337-522 2-170 (260)
457 COG5108 RPO41 Mitochondrial DN 28.5 3.3E+02 0.0072 29.5 8.6 24 193-216 33-56 (1117)
458 PRK10564 maltose regulon perip 28.4 67 0.0015 31.0 3.5 30 41-70 260-289 (303)
459 PF09454 Vps23_core: Vps23 cor 28.2 1.4E+02 0.0031 21.3 4.4 50 353-403 5-54 (65)
460 PF02847 MA3: MA3 domain; Int 28.1 1.8E+02 0.0039 23.2 5.8 22 259-280 7-28 (113)
461 KOG1550 Extracellular protein 27.8 8.1E+02 0.017 26.5 21.4 111 22-136 228-356 (552)
462 KOG1308 Hsp70-interacting prot 27.7 21 0.00046 34.7 0.2 102 470-584 125-226 (377)
463 PF04090 RNA_pol_I_TF: RNA pol 27.0 4.8E+02 0.01 23.7 9.8 130 356-502 41-187 (199)
464 PF15015 NYD-SP12_N: Spermatog 26.9 1.3E+02 0.0029 30.4 5.3 17 433-449 234-250 (569)
465 PF00244 14-3-3: 14-3-3 protei 26.8 5.3E+02 0.012 24.1 11.7 50 475-524 142-200 (236)
466 PF10475 DUF2450: Protein of u 26.7 4E+02 0.0088 25.9 8.8 52 228-281 103-154 (291)
467 PF15161 Neuropep_like: Neurop 26.6 23 0.0005 23.8 0.1 17 600-617 12-28 (65)
468 cd08332 CARD_CASP2 Caspase act 26.4 3E+02 0.0065 21.1 6.5 35 337-371 46-80 (90)
469 PF11838 ERAP1_C: ERAP1-like C 26.4 6.2E+02 0.013 24.8 22.2 83 406-488 145-230 (324)
470 COG0735 Fur Fe2+/Zn2+ uptake r 26.3 2.7E+02 0.0058 23.7 6.6 61 62-123 10-70 (145)
471 COG2912 Uncharacterized conser 26.3 1.6E+02 0.0034 28.1 5.5 57 465-521 187-243 (269)
472 PF08225 Antimicrobial19: Pseu 25.9 31 0.00067 17.9 0.5 10 607-616 12-21 (23)
473 PF10255 Paf67: RNA polymerase 25.9 4.3E+02 0.0092 27.1 8.9 56 328-383 125-191 (404)
474 smart00638 LPD_N Lipoprotein N 25.6 8.9E+02 0.019 26.3 24.6 58 222-281 309-367 (574)
475 PRK11639 zinc uptake transcrip 24.7 2.3E+02 0.005 24.9 6.1 62 382-445 17-78 (169)
476 COG0735 Fur Fe2+/Zn2+ uptake r 24.6 3.4E+02 0.0073 23.1 6.9 62 380-443 10-71 (145)
477 PF15469 Sec5: Exocyst complex 24.5 5E+02 0.011 23.0 11.0 24 396-419 91-114 (182)
478 PF11838 ERAP1_C: ERAP1-like C 24.4 6.7E+02 0.015 24.5 17.8 27 238-264 55-83 (324)
479 PF11817 Foie-gras_1: Foie gra 24.3 4.8E+02 0.01 24.6 8.7 53 362-414 184-241 (247)
480 PF13934 ELYS: Nuclear pore co 24.1 5.9E+02 0.013 23.7 12.6 112 338-459 91-204 (226)
481 KOG4279 Serine/threonine prote 23.9 2.2E+02 0.0049 31.2 6.6 145 358-518 203-369 (1226)
482 KOG1811 Predicted Zn2+-binding 23.8 5.2E+02 0.011 27.7 8.9 91 427-519 556-650 (1141)
483 KOG0687 26S proteasome regulat 23.5 7.2E+02 0.016 24.5 11.9 62 392-453 105-174 (393)
484 TIGR02328 conserved hypothetic 23.3 93 0.002 24.8 2.9 26 553-578 48-73 (120)
485 PF12862 Apc5: Anaphase-promot 23.3 3.5E+02 0.0076 20.8 8.2 19 400-418 50-68 (94)
486 cd08326 CARD_CASP9 Caspase act 23.2 1E+02 0.0022 23.4 3.1 57 27-88 20-76 (84)
487 PF14669 Asp_Glu_race_2: Putat 22.8 5.7E+02 0.012 23.1 13.2 56 295-350 137-206 (233)
488 PRK14958 DNA polymerase III su 22.8 9.6E+02 0.021 25.7 12.2 100 272-392 182-281 (509)
489 KOG2471 TPR repeat-containing 21.8 9.5E+02 0.021 25.3 10.2 139 297-438 213-380 (696)
490 KOG3636 Uncharacterized conser 21.8 7.5E+02 0.016 25.5 9.3 91 275-367 169-271 (669)
491 PF12968 DUF3856: Domain of Un 21.5 4.7E+02 0.01 21.6 8.4 59 429-487 57-128 (144)
492 KOG0686 COP9 signalosome, subu 21.4 8.9E+02 0.019 24.8 15.0 58 224-281 151-214 (466)
493 PF09477 Type_III_YscG: Bacter 21.1 4.4E+02 0.0096 21.2 9.2 78 201-281 19-96 (116)
494 smart00804 TAP_C C-terminal do 20.8 96 0.0021 22.0 2.3 25 267-291 38-62 (63)
495 KOG2396 HAT (Half-A-TPR) repea 20.6 1E+03 0.022 25.2 31.7 79 57-137 90-169 (568)
496 PF12796 Ank_2: Ankyrin repeat 20.6 3.6E+02 0.0079 20.0 6.4 81 15-107 3-86 (89)
497 KOG4814 Uncharacterized conser 20.5 4.6E+02 0.01 28.4 7.9 61 462-522 397-457 (872)
498 COG5431 Uncharacterized metal- 20.5 46 0.001 25.9 0.7 15 629-643 43-57 (117)
499 PF10155 DUF2363: Uncharacteri 20.4 5E+02 0.011 21.5 10.6 110 21-134 4-124 (126)
500 COG5159 RPN6 26S proteasome re 20.4 7.9E+02 0.017 23.8 13.8 136 362-519 9-151 (421)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-120 Score=1019.09 Aligned_cols=620 Identities=40% Similarity=0.704 Sum_probs=610.2
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 4 SKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
|+..+|++|+..|++.|++++|.++|++|+.+ |+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 67789999999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHH
Q 006457 84 SALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLL 163 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 163 (644)
++.|+++.|.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|.. ||+++||++|.+|++.|++++|+++
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHH
Q 006457 164 FKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSR 243 (644)
Q Consensus 164 ~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 243 (644)
|++|. ..|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.
T Consensus 377 f~~M~------------~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 377 YALME------------QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HHHHH------------HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Q 006457 244 KVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE 323 (644)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 323 (644)
++|++|.++|+++||+||.+|+++|+.++|+++|++|. . +++||..||+.+|.+|++.|+++.++++|..+.+.|+.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~-~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH-h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999997 4 699999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
+..++|+||++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 006457 484 KLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELN 563 (644)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~ 563 (644)
++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+..+||..+.+|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccCCccccccCchhHHhHHhHHHHHHhh------------------hccccCCcchhhHhhhhccceeEEEe
Q 006457 564 VKLQEVGYVTDMTSVIHDVDQEEKEMTLRIHSEKLA------------------NLRVCGDCHTVIRLISKVVDREIVVR 625 (644)
Q Consensus 564 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~l~~~~~~~~~~~~~s~~~~~~~~~~ 625 (644)
.+|++.||+||++.++ ++++++|+..+++|||||| |||+|+|||+++||||++++|+||||
T Consensus 762 ~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 840 (857)
T PLN03077 762 EKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840 (857)
T ss_pred HHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEe
Confidence 9999999999999888 4577889999999999999 99999999999999999999999999
Q ss_pred cCCcccccccccccCCC
Q 006457 626 DSKRFHYFKDGLCSCGD 642 (644)
Q Consensus 626 ~~~~~h~~~~g~~~~~~ 642 (644)
|.+|||||+||+|||+|
T Consensus 841 d~~rfh~f~~g~csc~d 857 (857)
T PLN03077 841 DTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCcceeCCCCcccCCC
Confidence 99999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-118 Score=977.43 Aligned_cols=595 Identities=38% Similarity=0.688 Sum_probs=586.2
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCC-CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 006457 35 KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLS-LTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSA 113 (644)
Q Consensus 35 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (644)
+++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3366799999999999999999999999999764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHH
Q 006457 114 LIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIAS 193 (644)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ 193 (644)
|+.+|+++|+++.|.++|++|++ ||.++||++|.+|++.|++++|+++|++|. ..|+.||..||+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~------------~~g~~p~~~t~~~ 229 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMW------------EDGSDAEPRTFVV 229 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH------------HhCCCCChhhHHH
Confidence 99999999999999999999999 999999999999999999999999999999 8899999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHH
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEA 273 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 273 (644)
++.+|++.|..+.+++++..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|++++|
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006457 274 LDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE 353 (644)
Q Consensus 274 ~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 353 (644)
+++|++|. ..|+.||..||++++.+|++.|+++.|.++|..|.+.|+.||..++++||++|+++|++++|.++|++|.+
T Consensus 310 ~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999998 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHH
Q 006457 354 KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCM 433 (644)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 433 (644)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998878999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 434 VDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+++|+++|++++|.+++++|+.+|+..+|++|+.+|..+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhHHhHHhHH
Q 006457 514 RTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEKEMTLRI 593 (644)
Q Consensus 514 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~ 593 (644)
++++.|+++|+++.||+||+++++.+|.|.+||..||+..+||+.+.++..+|++.||+||+.++++++++++|+..+.+
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh------------------hccccCCcchhhHhhhhccceeEEEecCCcccccccccccCCCCC
Q 006457 594 HSEKLA------------------NLRVCGDCHTVIRLISKVVDREIVVRDSKRFHYFKDGLCSCGDYW 644 (644)
Q Consensus 594 ~~~~~~------------------~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~~~~~~~ 644 (644)
|||||| |||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999 999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-77 Score=672.98 Aligned_cols=600 Identities=28% Similarity=0.425 Sum_probs=531.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
.++...+|+|+..|++.|+++.|+++|++|+++ |+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~-d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC-CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 356678899999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALL 162 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 162 (644)
|+..+++..+.++|..+++.|+.||..++|+||.+|+++|+++.|.++|++|+. ||+++||+||.+|++.|++++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHH
Q 006457 163 LFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242 (644)
Q Consensus 163 ~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 242 (644)
+|++|. ..|+.||..||+.++.+|++.|+.+.+++++..+.+.|+.||..+||+||.+|+++|++++|
T Consensus 275 lf~~M~------------~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 275 LFFTMR------------ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred HHHHHH------------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence 999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 243 RKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
.++|++|..+|+++||+||.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.
T Consensus 343 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACS 402 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 402 (644)
|+..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.. +++||..||+++|.+|+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006457 403 HAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482 (644)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (644)
+.|.++.+.+++..+.+ .|+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|
T Consensus 501 ~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 501 RIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred hhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999977 599999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHhhccC--CCCchhHHHHHHHHhhcCCchHHHHHHHHHh-hCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHH
Q 006457 483 KKLFELE--PNNCGYHVLLSNIYANAGRWEDVERTRSLMK-NRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYL 559 (644)
Q Consensus 483 ~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~ 559 (644)
++|.+.+ |+ ..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.... ...+..+ ...++.++ +
T Consensus 578 ~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y----~~lv~~l----~r~G~~~e----A 644 (857)
T PLN03077 578 NRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY----ACVVDLL----GRAGKLTE----A 644 (857)
T ss_pred HHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH----HHHHHHH----HhCCCHHH----H
Confidence 9998854 65 5789999999999999999999999998 67876543110 0000001 11122222 4
Q ss_pred HHHHHHHHHcCcccCCccccccCchhHHhHHh---HHHHH--------------Hhhh-ccccCCcchhhHhhhhcccee
Q 006457 560 EELNVKLQEVGYVTDMTSVIHDVDQEEKEMTL---RIHSE--------------KLAN-LRVCGDCHTVIRLISKVVDRE 621 (644)
Q Consensus 560 ~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~-l~~~~~~~~~~~~~s~~~~~~ 621 (644)
.+++++| +..||...+...+..+.....+ ....+ .|+| ....|+..++.++...|..+.
T Consensus 645 ~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 645 YNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 4455444 5788876644333333111000 00011 1112 356788899999888775552
Q ss_pred EE-------EecCCcccccccccc
Q 006457 622 IV-------VRDSKRFHYFKDGLC 638 (644)
Q Consensus 622 ~~-------~~~~~~~h~~~~g~~ 638 (644)
+- |.-.+..|-|..|--
T Consensus 722 ~~k~~g~s~ie~~~~~~~f~~~d~ 745 (857)
T PLN03077 722 LTVDPGCSWVEVKGKVHAFLTDDE 745 (857)
T ss_pred CCCCCCccEEEECCEEEEEecCCC
Confidence 21 112346777765543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.4e-69 Score=589.62 Aligned_cols=507 Identities=17% Similarity=0.199 Sum_probs=469.0
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC----CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK----NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPC 78 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 78 (644)
.++...|..++..+++.|++++|.++|++|+.+ |+...++.++.+|.+.|..++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 456778999999999999999999999999876 2445667788889999999999999999974 99999999
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC--CCCeecHHHHHHHHHhCCC
Q 006457 79 AIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR--IRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 79 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 156 (644)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|... .||..+|++||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999865 6899999999999999999
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHH--hCCCCCccHHHHHHHHHH
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIK--RGFDSEVGVGNTLIDAYA 234 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~ 234 (644)
+++|+++|++|. ..|+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+|++||.+|+
T Consensus 523 ~eeAl~lf~~M~------------~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 523 VAKAFGAYGIMR------------SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHHHH------------HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999999999999987 678999999999999999
Q ss_pred hcCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 235 RGGHVDVSRKVFDGMI----EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
++|++++|.++|+.|. .++..+||.+|.+|++.|++++|+++|++|. ..|+.||..||+.++.+|++.|++++|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999994 4578999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
++|+.|.+.|+.|+..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999995 5899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hcC-------------------CH
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG----RAG-------------------KL 443 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~ 443 (644)
+.||..||+.++.+|++.|++++|.++|..|.+ .|+.||..+|++|+.+|. +++ ..
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 999999999999999999999999999999966 599999999999998743 222 24
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-CCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 444 KEAYDLIEGM---KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFEL-EPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 444 ~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
++|..+|++| ++.||..+|++++.++...+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 6799999999 68999999999998888888888888888876533 355678999999987332 36899999999
Q ss_pred hhCCCcCCCc
Q 006457 520 KNRRLAKTPG 529 (644)
Q Consensus 520 ~~~~~~~~~~ 529 (644)
...|+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999987653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-63 Score=549.01 Aligned_cols=471 Identities=14% Similarity=0.189 Sum_probs=442.8
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 4 SKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
++..+++.++..|.+.|.+++|..+|+.|+. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y 482 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC 482 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566788899999999999999999999998 599999999999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC--CCCeecHHHHHHHHHhCCChhHHH
Q 006457 84 SALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR--IRNIVSWTSMLTGYVQNDNAREAL 161 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 161 (644)
++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|... .||..+||+||.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999765 799999999999999999999999
Q ss_pred HHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHH
Q 006457 162 LLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDV 241 (644)
Q Consensus 162 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 241 (644)
++|++|... ..++.||..||++++.+|++.|+++.|.++++.|.+.|+.|+..+|+.+|.+|++.|++++
T Consensus 563 ~lf~eM~~~----------~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 563 DVLAEMKAE----------THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred HHHHHHHHh----------cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 999999721 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHH
Q 006457 242 SRKVFDGMI----EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVI 317 (644)
Q Consensus 242 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 317 (644)
|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. ..|+.||..+|++++.+|++.|++++|.++|++|.
T Consensus 633 Al~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999994 5799999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|.+|.+.|+.||..+
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999997 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc----c-------------------CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 394 FVSVLSACSH----A-------------------GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 394 ~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
|++++..|.+ . +..++|..+|++|.+ .|+.||..+|+.++..+.+.+..+.+..++
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~ 870 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLI 870 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHH
Confidence 9999876542 1 124679999999976 599999999999999999999999999999
Q ss_pred HhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 451 EGMK---VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 451 ~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+.|+ ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 871 ~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 871 ENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9884 556789999999998543 368999999998864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-61 Score=530.57 Aligned_cols=404 Identities=26% Similarity=0.436 Sum_probs=387.7
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
.|+..+|+.|+..|++.|++++|.++|++|+.+ |+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 378899999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALL 162 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 162 (644)
|++.+....+.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|+. +|+++||+||.+|++.|+.++|++
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHH
Q 006457 163 LFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242 (644)
Q Consensus 163 ~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 242 (644)
+|++|. ..|+.||..||++++.+|++.|.++.|+++|..|.+.|+.||..++++||++|+++|++++|
T Consensus 312 lf~~M~------------~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 312 LYYEMR------------DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHHHHH------------HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHH-hCC
Q 006457 243 RKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIK-MDL 321 (644)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~ 321 (644)
.++|++|.++|+++||+||.+|++.|+.++|+++|++|. ..|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+
T Consensus 380 ~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999 889999999999999999999999999999999986 699
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 006457 322 EESVIVGTSIIDMYCKCGQVDLARKAFNQMK-EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLS 399 (644)
Q Consensus 322 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 399 (644)
.|+..+|+.++++|++.|++++|.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~ 536 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLN 536 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHH
Confidence 9999999999999999999999999999997 58999999999999999999999999998875 4564 668999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
.|++.|++++|.++++.|.+ .|+.+
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 99999999999999999955 57653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-30 Score=292.91 Aligned_cols=498 Identities=13% Similarity=0.062 Sum_probs=382.4
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.++..+..+...+.+.|++++|.+.|+++... | +...|..+...+...|++++|++.|+.+.+.... +......++
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHH
Confidence 456678888999999999999999999887532 2 5567888888888999999999999998875422 234455667
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 159 (644)
..+.+.|++++|.++++.+.+.. +++..++..+...|...|++++|...|+++... +.+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 77888889999999888887653 556778888888888899999999988887654 3456677788888888899999
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
|.+.|+++.. . .+.+..++..+...+...|+.+.+...+..+.+.+ +.+...+..++..|.+.|++
T Consensus 518 A~~~~~~~~~------------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 518 AIQRFEKVLT------------I-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHHHH------------h-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 9998888862 1 12356677777778888888888888888877664 44566777888888888888
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHH
Q 006457 240 DVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQV 316 (644)
Q Consensus 240 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 316 (644)
++|..+++.+.. .+...|..+..+|...|++++|+..|+++. .. .+.+...+..+...+...|++++|..+++.+
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL-AL-QPDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888742 366788888888888888888888888886 22 2335566777778888888888888888888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 317 IKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
.+.. +.+...+..++..+...|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++... .|+..+
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 738 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN 738 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence 7754 44567778888888888888888888887764 34566777778888888888888888888774 455566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 471 (644)
+..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ . .+++..+++.+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 77777888888888888888888765 23446777788888888888888888888776 2 23456677777777777
Q ss_pred cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 472 HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
.|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777 6788888888888888877777888888888888888888888876654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-29 Score=290.85 Aligned_cols=497 Identities=12% Similarity=0.010 Sum_probs=427.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK--NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.+...+..+...+.+.|++++|...+..+... .+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 404 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLG 404 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 445677888999999999999999999887542 266789999999999999999999999998754 22455677777
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 159 (644)
..+...|++++|.+.+..+.+... ........++..|.+.|++++|..+++.+... +.+..+|+.+...|...|++++
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 888899999999999999988653 23456667888999999999999999998766 4577889999999999999999
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
|.+.|+++. .. .+.+...+..+...+...|+++.|.+.+..+.+.. +.+..++..+...|.+.|+.
T Consensus 484 A~~~~~~a~------------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 484 AREAFEKAL------------SI-EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHHHHHH------------hh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCH
Confidence 999999986 21 12345567778888899999999999999998765 45678899999999999999
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHH
Q 006457 240 DVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQV 316 (644)
Q Consensus 240 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 316 (644)
++|...|+++.. .+...+..++..|...|++++|+.+++.+. . ..+.+..++..+...+...|++++|...++.+
T Consensus 550 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA-D-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH-H-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998833 356788889999999999999999999997 3 34567788999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 317 IKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
.+.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..++..+...|++++|..+++.+.+.+ +++...
T Consensus 628 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 628 LALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 8865 45677788999999999999999999998764 357789999999999999999999999999875 557778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 471 (644)
+..+...+...|++++|...|+.+.. ..|+..++..++.++.+.|++++|.+.++++ . .+.+...+..+...+..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88888999999999999999999854 4566688888999999999999999999887 2 33467788889999999
Q ss_pred cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 472 HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.|+.++|...++++++..|+++..+..++.++...|+ ++|.++++++.+..
T Consensus 783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999 88999999987653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.1e-21 Score=224.14 Aligned_cols=495 Identities=9% Similarity=0.008 Sum_probs=313.4
Q ss_pred CCCCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-CCc-chH----------------HHHHHHHHcCCCchHHHHHHH
Q 006457 1 MKLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-NNV-FSW----------------NSVIADLARGGDSVEALRAFS 62 (644)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p~~-~~~----------------~~li~~~~~~g~~~~a~~~~~ 62 (644)
+.+.++..+..++..+.+.|+.++|.+.++++... |+. ..+ -.+...+...|++++|++.|+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 35678889999999999999999999999987542 322 222 223346788999999999999
Q ss_pred HhhHCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC-
Q 006457 63 SMRKLSLTPTRST-FPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRN- 140 (644)
Q Consensus 63 ~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 140 (644)
.+.+.. +|+... ...........++.++|.+.++.+++.. +.+...+..+...+...|+.++|...|+++....+.
T Consensus 137 ~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 137 KLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 988743 233221 1111222234588999999999999875 446677888889999999999999998876432110
Q ss_pred --------------------eecHH----------------------------------HHHHHHHhCCChhHHHHHHHH
Q 006457 141 --------------------IVSWT----------------------------------SMLTGYVQNDNAREALLLFKE 166 (644)
Q Consensus 141 --------------------~~~~~----------------------------------~li~~~~~~g~~~~A~~~~~~ 166 (644)
...+. .....+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00000 113345667888888888888
Q ss_pred hHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC-CccHH------------HHHHHH
Q 006457 167 FLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDS-EVGVG------------NTLIDA 232 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~~ 232 (644)
... ..| +...+..+-.++.+.|+.++|...++.+++..-.. ....+ ..+...
T Consensus 295 aL~--------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 295 AVR--------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 752 234 56677777788888899999998888887654221 11111 122446
Q ss_pred HHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHH
Q 006457 233 YARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRL 308 (644)
Q Consensus 233 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~ 308 (644)
+.+.|++++|...|+++.. .+...+..+...|...|++++|++.|++.. . ..|+ ...+..+...+. .++.++
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL-~--~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL-R--MDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHH-hcCHHH
Confidence 7788889999988888733 356677778888888999999999988887 2 2233 333333333332 223344
Q ss_pred HHHHHHHHHHhCC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHH
Q 006457 309 GKCIHDQVIKMDL--------EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALD 377 (644)
Q Consensus 309 a~~i~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 377 (644)
|..+++.+..... ......+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|..
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4433332211100 00011233344445555555555555554432 2 22334444445555555555555
Q ss_pred HHHHHHHcCCCC-CHHHH--------------------------------------------HHHHHHHHccCCHHHHHH
Q 006457 378 LFYKMIKAGVRP-NYITF--------------------------------------------VSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 378 ~~~~m~~~g~~p-~~~t~--------------------------------------------~~ll~a~~~~g~~~~a~~ 412 (644)
.++++.+. .| +...+ ..+...+...|+.++|..
T Consensus 517 ~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 517 LMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55554432 12 11111 123334455566666655
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 413 WLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..+...+...|+.++|+..++++.+..|
T Consensus 595 ~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 5541 2334556677788888888888888888876 3344 456778888888888888888888888888888
Q ss_pred CCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 491 NNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+++..+..++.++...|++++|.++++.+....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888888888888888888888888888876543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=9.4e-21 Score=218.73 Aligned_cols=501 Identities=11% Similarity=0.065 Sum_probs=326.5
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccH--------
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYVD--KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTF-------- 76 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------- 76 (644)
..+...+..+...++.+.|.+.++++.. +.|+..+..++..+.+.|+.++|.+.++++.+.. |+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHH
Confidence 3356677788889999999999998753 3377788999999999999999999999999854 554433
Q ss_pred ---------HHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHH
Q 006457 77 ---------PCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFV-SSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWT 145 (644)
Q Consensus 77 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 145 (644)
..+.+.+...|++++|.+.++.+++.. +|+... ...+.......|+.++|.+.|+++... +.+...+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 222345778899999999999998754 333321 111122223459999999999999876 34667788
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhhhhccCC------CCCCCCCccCCH-hhHHHH------------------------
Q 006457 146 SMLTGYVQNDNAREALLLFKEFLLEESECGG------ASENSDNVFVDS-VAIASV------------------------ 194 (644)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~~~~~p~~-~t~~~l------------------------ 194 (644)
.+...+...|+.++|+..|+++......... ......+..|+. ..+...
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 8999999999999999999998521100000 000000000000 001111
Q ss_pred ----------HHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C---CHhHHHH
Q 006457 195 ----------LSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--K---DAVTWNS 259 (644)
Q Consensus 195 ----------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ 259 (644)
-.++...|+++.|...++.+++.. +.+..++..|...|.+.|++++|+..|++..+ | ....|..
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 122334556666666666655542 23455556666666666666666666665532 1 1122333
Q ss_pred HHH------------HHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 260 IIA------------IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 260 li~------------~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
++. .+.+.|++++|+..|++.. .. -+.+...+..+...+...|++++|.+.++++++.. +.+...
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al-~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR-QV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 321 3345566666666666665 21 12233444455556666666666666666666543 223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKN------------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITF 394 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 394 (644)
+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~ 498 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLT 498 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 444555443 345566666665544211 112344556677889999999999999885 45 45667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHH-----------------------------------------
Q 006457 395 VSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGC----------------------------------------- 432 (644)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~----------------------------------------- 432 (644)
..+...+.+.|++++|...++.+.+. .| +...+..
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 78888999999999999999998652 23 2322222
Q ss_pred ---HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCc
Q 006457 433 ---MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW 509 (644)
Q Consensus 433 ---li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (644)
+...+...|+.++|.++++.-+ ++...+..+...+...|+.++|+..++++++.+|+++..+..++.+|...|++
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 2334555666666666666432 34456677888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhC
Q 006457 510 EDVERTRSLMKNR 522 (644)
Q Consensus 510 ~~a~~~~~~m~~~ 522 (644)
++|.+.++...+.
T Consensus 654 ~eA~~~l~~ll~~ 666 (1157)
T PRK11447 654 AAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
No 11
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.93 E-value=2e-26 Score=185.97 Aligned_cols=94 Identities=63% Similarity=1.015 Sum_probs=85.1
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCchhHH--------hHHhHHHHHHhh-
Q 006457 529 GFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQEEK--------EMTLRIHSEKLA- 599 (644)
Q Consensus 529 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~- 599 (644)
|+||+++ |.|.+||.+||+. ++..++...||.|++..+.++++++++ +..+.+||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899976 9999999999987 556777889999999999998877665 568899999999
Q ss_pred -----------hc-cccCCcchhhHhhhhccceeEEEecCCcccccc
Q 006457 600 -----------NL-RVCGDCHTVIRLISKVVDREIVVRDSKRFHYFK 634 (644)
Q Consensus 600 -----------~l-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 634 (644)
|+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINTRVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HhcccceeEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 66 999999999999999999999999999999997
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.4e-21 Score=188.47 Aligned_cols=465 Identities=14% Similarity=0.124 Sum_probs=366.7
Q ss_pred hHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 006457 23 TNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIF 102 (644)
Q Consensus 23 ~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 102 (644)
....+-|+.-++. +. ....|..-..+.|++++|.+.-...-+.+ ..+......+-..+....+++...+--...++.
T Consensus 35 ~~v~qq~~~t~~~-~~-~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 35 SSVLQQFNKTHEG-SD-DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHhccCCcc-ch-hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 3344444443333 22 24456666678899999988766544433 223333333344555556666555544444443
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCC
Q 006457 103 GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENS 181 (644)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 181 (644)
. +.-..+|+.+.+.+-..|++++|..+++.+.+. +..+..|..+..++...|+.+.|.+.|.+..
T Consensus 112 ~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al------------- 177 (966)
T KOG4626|consen 112 N-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL------------- 177 (966)
T ss_pred c-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH-------------
Confidence 2 334678999999999999999999999998887 4478899999999999999999999998854
Q ss_pred CCccCCHhhHHHHHHH-hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHH
Q 006457 182 DNVFVDSVAIASVLSA-CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKD---AVTW 257 (644)
Q Consensus 182 ~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 257 (644)
.+.|+.+...+-+.. ....|.+++|..-+-.++... +.=..+|+.|...+-..|++..|+..|++...-| ..+|
T Consensus 178 -qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAY 255 (966)
T KOG4626|consen 178 -QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAY 255 (966)
T ss_pred -hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHH
Confidence 566766655443333 334688889988888777653 2235679999999999999999999999986543 4578
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
-.|...|-..+.+++|+..|.+.. ...|+ ...+..+...|-..|.++.|...+++.+... +.-...|+.|..++-
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALK 331 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHH
Confidence 889999999999999999999887 45565 4567777777888999999999999998864 334678999999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 006457 337 KCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
..|++.+|.+.+.+... | -..+.+.|...|...|.+++|..+|..... +.|. ...++.|...|-+.|++++|+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 99999999999998774 3 356889999999999999999999999887 5665 4578899999999999999999
Q ss_pred HHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 413 WLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 413 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
.+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.+...|+..+|+..++.+++++
T Consensus 410 ~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 410 CYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999984 58887 788999999999999999999999876 56664 4478889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 490 PNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
|+.+.+|..++.++.-..+|.+=-+.
T Consensus 487 PDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred CCCchhhhHHHHHHHHHhcccchHHH
Confidence 99999999999888777777774333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.8e-17 Score=183.11 Aligned_cols=496 Identities=7% Similarity=-0.024 Sum_probs=329.6
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCC-----------
Q 006457 2 KLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSL----------- 69 (644)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----------- 69 (644)
.+.+..++..|...|.+.|+.++|+..+++.... |+-..|..++..+ +++.+|..+++++.....
T Consensus 74 dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 74 VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 4566788888899999999999999888876543 3222222223222 667777777777665321
Q ss_pred ---------------------------CCCcccHHHH-HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 006457 70 ---------------------------TPTRSTFPCA-IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSK- 120 (644)
Q Consensus 70 ---------------------------~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 120 (644)
.|+..+.... .+.+...++++.+..++..+.+.+. .+..-...|-..|..
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAG 229 (987)
T ss_pred HhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 1122222222 4555566677777777777777652 234445555556666
Q ss_pred CCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHH-------
Q 006457 121 CGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIAS------- 193 (644)
Q Consensus 121 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~------- 193 (644)
.++ +.|..+++.... .+...+..+...|.+.|+.++|..+++++..-... .|+..++..
T Consensus 230 l~~-~~a~al~~~~lk--~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-----------~~~~~~~~~~l~r~~~ 295 (987)
T PRK09782 230 QLD-DRLLALQSQGIF--TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT-----------DAQEKSWLYLLSKYSA 295 (987)
T ss_pred hCH-HHHHHHhchhcc--cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC-----------CCccHHHHHHHHhccC
Confidence 355 666666554333 57778889999999999999999999998632111 122211111
Q ss_pred -----------------------HHHHhhcCCCchHHHHH-----------------------------HHHHHHhCCCC
Q 006457 194 -----------------------VLSACSRVTVNGVTEGA-----------------------------HGFVIKRGFDS 221 (644)
Q Consensus 194 -----------------------ll~~~~~~~~~~~a~~~-----------------------------~~~~~~~g~~~ 221 (644)
++..+.+.++++.++++ +..+.+.. +-
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~ 374 (987)
T PRK09782 296 NPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PA 374 (987)
T ss_pred chhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CC
Confidence 12223333333333322 11111110 11
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----CHhHHHHHHHHHHHCCC---hhHHHHH----------------
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIE-K-----DAVTWNSIIAIYAQNGL---AAEALDV---------------- 276 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~---------------- 276 (644)
+....--+.-...+.|+.++|.++|+.... + +...-+-++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 223333333445678889999999988744 1 23344466777777665 3333333
Q ss_pred ------HHHhHHcCCC-CC--ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006457 277 ------FDQMVKSTDV-KC--NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKA 347 (644)
Q Consensus 277 ------~~~m~~~~~~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 347 (644)
+.......+. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 1112111122 23 44555555555555 78888999787777654 4544444445555789999999999
Q ss_pred HHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 348 FNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 348 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
|+++.. ++...+..+...+.+.|+.++|...|++..+.. +++...+..+.......|++++|...++...+ +.|
T Consensus 532 ~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P 607 (987)
T PRK09782 532 WQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAP 607 (987)
T ss_pred HHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCC
Confidence 997764 445567777888899999999999999998854 22333343444555667999999999999854 567
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
+...|..+..++.+.|++++|+..+++. ...|+ ...++.+..++...|+.++|+..++++++++|+++..+..++.++
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8889999999999999999999999987 45564 557778888999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhCC
Q 006457 504 ANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~~ 523 (644)
...|++++|...+++..+..
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999987543
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=8.8e-18 Score=185.52 Aligned_cols=476 Identities=12% Similarity=0.049 Sum_probs=326.2
Q ss_pred HHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006457 16 VDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGK 93 (644)
Q Consensus 16 ~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (644)
+...|++++|...|...... | +..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.++|.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 34449999999999987542 3 6678899999999999999999999999984 56666665555333 8889999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHH--------HHhCCChHHHHHHHhhCCCCCCCeecHHHH-HHHHHhCCChhHHHHHH
Q 006457 94 QAHQQAFIFGFHRDVFVSSALIDM--------YSKCGELSDARKLFDEIPQRIRNIVSWTSM-LTGYVQNDNAREALLLF 164 (644)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 164 (644)
++++.+++.. +.+..++..+... |.+.+...++++ .+.....|+....... ...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999875 3345555555555 776655555555 2222211234434444 89999999999999999
Q ss_pred HHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhc-CCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHH
Q 006457 165 KEFLLEESECGGASENSDNVFVDSVAIASVLSACSR-VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSR 243 (644)
Q Consensus 165 ~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 243 (644)
.++. ..+. .+..-...+-.++.. .++ +.+..++.. .+..++.+...+.+.|.+.|+.++|.
T Consensus 206 ~~L~------------k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 206 NEAR------------QQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHH------------hcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9997 4332 223334444445555 355 555555332 33467888889999999999999999
Q ss_pred HHHhcCCC-----CCHhHH--H----------------------------HHHHH-------------------------
Q 006457 244 KVFDGMIE-----KDAVTW--N----------------------------SIIAI------------------------- 263 (644)
Q Consensus 244 ~~~~~~~~-----~~~~~~--~----------------------------~li~~------------------------- 263 (644)
++++++.. ++..+| + .++..
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 98887721 100000 0 00111
Q ss_pred --------------------------------------HHHCCChhHHHHHHHHhHH-cCCCCCChhhHHHHHHHHHccc
Q 006457 264 --------------------------------------YAQNGLAAEALDVFDQMVK-STDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 264 --------------------------------------~~~~g~~~~A~~~~~~m~~-~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
..+.|+.++|.++|+.... .....++......++..+.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 1334555666666665541 1112222333335555555554
Q ss_pred c---HHHHHHH----------------------HHHHHHh-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 006457 305 V---LRLGKCI----------------------HDQVIKM-DL-EE--SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN 355 (644)
Q Consensus 305 ~---~~~a~~i----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 355 (644)
. ...+..+ .....+. +. ++ +...+..+...+.. |+.++|...|.+.....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 4 2222111 1111111 11 23 56667777777776 78888988777665432
Q ss_pred hhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHH
Q 006457 356 VRSWTAMIAG--YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGC 432 (644)
Q Consensus 356 ~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 432 (644)
...++.+..+ +...|++++|...|+++... +|+...+..+..++.+.|++++|..+++...+. .|+ ...+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~~ 581 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYWW 581 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHHH
Confidence 2344444444 46899999999999998653 555566667778889999999999999998652 343 344444
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
+...+.+.|++++|...+++. ...|+...|..+..++.+.|+.++|+..++++++++|+++..+..++.++...|++++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 445555679999999999986 5678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 006457 512 VERTRSLMKNRR 523 (644)
Q Consensus 512 a~~~~~~m~~~~ 523 (644)
|...++...+..
T Consensus 662 Ai~~l~~AL~l~ 673 (987)
T PRK09782 662 SREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhC
Confidence 999999887643
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.8e-18 Score=186.16 Aligned_cols=420 Identities=10% Similarity=0.013 Sum_probs=270.8
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCC
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 156 (644)
..-..+.+.|+++.|...|...++. .|+...|..+..+|.+.|++++|...++...+..| +...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3444556667777777777776653 35566677777777777777777777776665423 45567777777777777
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
+++|+.-|..... ..+..+ .....++..... ..+........+.. +++...+..+.. |...
T Consensus 210 ~~eA~~~~~~~~~-----------~~~~~~--~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~ 270 (615)
T TIGR00990 210 YADALLDLTASCI-----------IDGFRN--EQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQS 270 (615)
T ss_pred HHHHHHHHHHHHH-----------hCCCcc--HHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHH
Confidence 7777776655431 111111 111111111100 11111111111111 222222222222 2221
Q ss_pred CCHHHHHHHHhcCCCCCH---hHHHHHHHH---HHHCCChhHHHHHHHHhHHcCCCCC-ChhhHHHHHHHHHccccHHHH
Q 006457 237 GHVDVSRKVFDGMIEKDA---VTWNSIIAI---YAQNGLAAEALDVFDQMVKSTDVKC-NAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 237 g~~~~A~~~~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a 309 (644)
.....+..-++...+.+. ..+..+... ....+.+++|++.|+...+.....| +...+..+...+...|++++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 271 FRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred ccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 111111111221111111 111111111 1234678889999988873222334 345566677777788999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
...++..++.. +.....+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+..
T Consensus 351 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 351 LADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99998888754 33455777888888999999999999987754 356788889999999999999999999998853
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH------
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF------ 459 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~------ 459 (644)
+.+...+..+..++.+.|++++|+..|+...+. .+.+...+..+..+|...|++++|.+.|++. ...|+.
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 334667777888889999999999999998652 3335788899999999999999999999885 333421
Q ss_pred -H-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 460 -V-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 460 -~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
. .++..+..+...|++++|...++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 12222233345699999999999999999999889999999999999999999999988653
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=4.1e-19 Score=174.02 Aligned_cols=419 Identities=11% Similarity=0.115 Sum_probs=332.7
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCC-CCCCeecHHHHHHHHHhCCC
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQ-RIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 156 (644)
.|..-..+.|++.+|.+.-..+-... +.+....-.+-..+.+..+.+.....-..... .+.-..+|+.+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888887555443332 12222222333556666666654432222222 12356789999999999999
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCcc-HHHHHHHHHH
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVG-VGNTLIDAYA 234 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~ 234 (644)
.++|+.+++.+. .++| ....|..+..++...|+.+.|.+.+...++. .|+.. +.+.+.+...
T Consensus 132 ~~~al~~y~~ai--------------el~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 132 LQDALALYRAAI--------------ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHH--------------hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHH
Confidence 999999999986 3445 4667888999999999999999999888765 45443 3455666777
Q ss_pred hcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHH
Q 006457 235 RGGHVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~ 310 (644)
..|++.+|...+.+..+. =.++|+.|...+..+|+.-.|+..|++.+ .+.|+ ...|-.+...+...+.++.|.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 789999999998877443 34689999999999999999999999998 45565 346777777888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV 387 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (644)
..+.+..... +....++..+.-.|-..|.+|-|...+++..+ |+ ...|+.|..++-..|+..+|.+.|.+....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-- 349 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-- 349 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 8887776643 34566677788889999999999999999875 44 468999999999999999999999999884
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHH
Q 006457 388 RPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF-VVWG 463 (644)
Q Consensus 388 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 463 (644)
.|+ ....+.|...+...|.+++|..+|.... .+.|. ...++.|...|-.+|++++|+..+++. .++|+. ..++
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 555 4578899999999999999999999884 46676 677899999999999999999999886 788874 4899
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+...|...|+.+.|.+.+.+++.++|.-..++..|+.+|-..|++.+|+.-++...+-
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999987653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=7.3e-19 Score=181.15 Aligned_cols=294 Identities=10% Similarity=0.081 Sum_probs=227.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC---hhhHHHHHHHHHcc
Q 006457 230 IDAYARGGHVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN---AVTLSAVLLAIAHL 303 (644)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~ 303 (644)
...+...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+. ..+..++ ..++..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL-SRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34556778888888888887432 45577888888888888888888888887 4322221 24566777788888
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhhHHHHHHHHHhcCCHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN--------VRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A 375 (644)
|+++.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887653 4566778888888888899999988888876421 12355677788889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 376 LDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
...|+++.+.. +.+...+..+...+.+.|++++|.++|+++... .|+ ..++..++.+|.+.|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998753 334557777888899999999999999998552 343 466788999999999999999999987
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh---cCCchHHHHHHHHHhhCCCcCCCc
Q 006457 454 -KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN---AGRWEDVERTRSLMKNRRLAKTPG 529 (644)
Q Consensus 454 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 529 (644)
...|+...+..+...+...|++++|...++++++..|++.. +..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777788889999999999999999999999998764 4444444442 569999999999999999988886
Q ss_pred e
Q 006457 530 F 530 (644)
Q Consensus 530 ~ 530 (644)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.8e-18 Score=178.29 Aligned_cols=295 Identities=14% Similarity=0.104 Sum_probs=169.5
Q ss_pred HHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCC
Q 006457 47 DLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRD---VFVSSALIDMYSKCGE 123 (644)
Q Consensus 47 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 123 (644)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445666777777777776643 12334555666666666666666666666665432111 1345556666666666
Q ss_pred hHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCC
Q 006457 124 LSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVT 202 (644)
Q Consensus 124 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~ 202 (644)
+++|..+|+++.+. +.+..+++.++..+.+.|++++|++.++.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---------------------------------- 168 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE---------------------------------- 168 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH----------------------------------
Confidence 66666666666553 3345566666666666666666666666654
Q ss_pred CchHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHH
Q 006457 203 VNGVTEGAHGFVIKRGFDSE----VGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALD 275 (644)
Q Consensus 203 ~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 275 (644)
+.+..+. ...+..+...+.+.|++++|.+.|+++.+ .+..++..+...|.+.|++++|++
T Consensus 169 -------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 169 -------------KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred -------------HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1111100 11234456666677777777777776632 234566667777777777777777
Q ss_pred HHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 006457 276 VFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-- 353 (644)
Q Consensus 276 ~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 353 (644)
.|+++. ..+......++..+..++...|++++|...++.+.+.. |+...+..++..+.+.|++++|.++|+++.+
T Consensus 236 ~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 236 ALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 777776 22211113345556666666666666666666665543 3334445566666666666666666665442
Q ss_pred CChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 006457 354 KNVRSWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 354 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 392 (644)
|+..+++.++..+.. .|+.++++.++++|.+.+++|++.
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555556555555443 345666666666666655555444
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=3.9e-16 Score=172.59 Aligned_cols=394 Identities=9% Similarity=0.006 Sum_probs=206.6
Q ss_pred HHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 006457 45 IADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGEL 124 (644)
Q Consensus 45 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (644)
+......|+.++|++++.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...+...|++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 334445556666666655555411 1122235555555555566666666665555542 22334444555555555666
Q ss_pred HHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCC
Q 006457 125 SDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTV 203 (644)
Q Consensus 125 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~ 203 (644)
++|...+++.....| +.. |..+...+...|+.++|+..+++..
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al----------------------------------- 143 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL----------------------------------- 143 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------------
Confidence 666655555544322 333 5555555555555555555555543
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh--------HHHHHHHHHH-----HCCCh
Q 006457 204 NGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAV--------TWNSIIAIYA-----QNGLA 270 (644)
Q Consensus 204 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~ 270 (644)
+.. +.+...+..+..++...|..+.|.+.++.... ++. ....++.... ..+++
T Consensus 144 ------------~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 144 ------------PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred ------------HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 321 22344455566667777777777777776654 211 1111222221 11223
Q ss_pred ---hHHHHHHHHhHHcCCCCCChh-hHH----HHHHHHHccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCH
Q 006457 271 ---AEALDVFDQMVKSTDVKCNAV-TLS----AVLLAIAHLGVLRLGKCIHDQVIKMDLE-ESVIVGTSIIDMYCKCGQV 341 (644)
Q Consensus 271 ---~~A~~~~~~m~~~~~~~p~~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 341 (644)
++|++.++.+.+.....|+.. .+. ..+.++...|++++|...++.+.+.+.+ |+. ....+...|...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 667777777763222233321 111 1123344556777777777777665422 221 112245567777777
Q ss_pred HHHHHHHHhcCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHH
Q 006457 342 DLARKAFNQMKEKN-------VRSWTAMIAGYGMHCRAREALDLFYKMIKAG-----------VRPNY---ITFVSVLSA 400 (644)
Q Consensus 342 ~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a 400 (644)
++|...|+++.+.+ ...+..+..++...|++++|+.+++++.... -.|+. ..+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 77777777664321 1234445556677777777777777776531 01221 123344445
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 478 (644)
+...|++++|++.++.+.. ..+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|
T Consensus 369 l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 5566666666666666643 12234555666666666666666666666654 33443 33444445555566666666
Q ss_pred HHHHHHhhccCCCCc
Q 006457 479 EIAAKKLFELEPNNC 493 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~ 493 (644)
+.+++++++..|+++
T Consensus 447 ~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 447 DVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHhCCCCH
Confidence 666666666666654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.4e-16 Score=172.36 Aligned_cols=353 Identities=10% Similarity=0.023 Sum_probs=253.1
Q ss_pred hCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHH
Q 006457 120 KCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVL 195 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll 195 (644)
+..+++.-.-+|...++. ..+..-....+..+.+.|++++|+.+++... .. .+-+...+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l------------~~-~p~~~~~l~~l~ 83 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRV------------LT-AKNGRDLLRRWV 83 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHH------------Hh-CCCchhHHHHHh
Confidence 445555555555555443 1223334455667777788888888877765 11 111233344444
Q ss_pred HHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhH
Q 006457 196 SACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAE 272 (644)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 272 (644)
.+....|+++.|.+.++.+.+.. +.+...+..+...+...|++++|...|++... .+...|..+...+...|++++
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH
Confidence 55566778888888877777653 44566778888888999999999999988743 356788888888999999999
Q ss_pred HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
|...++.+. .. .|+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...|++..
T Consensus 163 A~~~~~~~~-~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 163 AISLARTQA-QE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHH-Hh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999988876 22 222222222233467789999999998888776533444455556778888999999999998876
Q ss_pred C---CChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 353 E---KNVRSWTAMIAGYGMHCRARE----ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 353 ~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
+ .+...+..+...|...|++++ |+..|++..+.. +.+...+..+...+...|++++|...++.... ..|
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P 315 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THP 315 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCC
Confidence 4 356678888888999999885 789999988742 33556788888889999999999999998855 345
Q ss_pred C-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 426 G-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWG-SLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 426 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+ ...+..+..+|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4 566777888999999999999999877 3456654443 345678889999999999999999988753
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=6.4e-16 Score=170.89 Aligned_cols=391 Identities=9% Similarity=-0.011 Sum_probs=263.6
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCC
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 156 (644)
-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.... +.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33444445555555555555554321 223334455555555555555555555554333 1233444444455555555
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
+++|+..+++ +++. .+.+.. +..+..++...
T Consensus 99 ~~eA~~~l~~-----------------------------------------------~l~~-~P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 99 YDEALVKAKQ-----------------------------------------------LVSG-APDKAN-LLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHH-----------------------------------------------HHHh-CCCCHH-HHHHHHHHHHC
Confidence 5555555554 4443 233455 78888899999
Q ss_pred CCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChh------hHHHHHHHH-----Hc
Q 006457 237 GHVDVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAV------TLSAVLLAI-----AH 302 (644)
Q Consensus 237 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------t~~~ll~a~-----~~ 302 (644)
|+.++|...++++.. | +...+..+...+...|..++|++.++... . .|+.. .....+... ..
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~-~---~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN-L---TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC-C---CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 999999999999843 3 56677778888999999999999998775 2 33320 111122221 11
Q ss_pred cccH---HHHHHHHHHHHHh-CCCCchh-HH-HH---HHHHHHhcCCHHHHHHHHHhcCCCC--hhh--HHHHHHHHHhc
Q 006457 303 LGVL---RLGKCIHDQVIKM-DLEESVI-VG-TS---IIDMYCKCGQVDLARKAFNQMKEKN--VRS--WTAMIAGYGMH 369 (644)
Q Consensus 303 ~~~~---~~a~~i~~~~~~~-~~~~~~~-~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~~~~ 369 (644)
.+.+ +.|...++.+.+. ...|+.. .+ .. .+.++...|++++|...|+.+.+.+ ... -..+...|...
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 2233 6778888888764 2233221 11 11 1234457799999999999988642 111 22256789999
Q ss_pred CCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC----------CCCC---hhHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRP---NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN----------IEPG---VEHYGCM 433 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l 433 (644)
|++++|+..|+++.+..... .......+..++...|++++|..+++.+..... -.|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999987643111 134566677788999999999999999865311 1123 2345677
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 434 VDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
..++...|++++|++.++++ ...| +...+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 88999999999999999987 2334 567888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 006457 512 VERTRSLMKNR 522 (644)
Q Consensus 512 a~~~~~~m~~~ 522 (644)
|..+++.+.+.
T Consensus 446 A~~~~~~ll~~ 456 (765)
T PRK10049 446 MDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1e-15 Score=166.22 Aligned_cols=422 Identities=12% Similarity=0.026 Sum_probs=274.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006457 40 SWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYS 119 (644)
Q Consensus 40 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 119 (644)
.+......+.+.|++++|+..|++... +.|+...|..+..++...|+++.|.+.+...++.. +.+...+..+...|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 345566677777888888888877766 45666667777777777788888887777777654 234556777777777
Q ss_pred hCCChHHHHHHHhhCCCCC-CCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHh
Q 006457 120 KCGELSDARKLFDEIPQRI-RNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSAC 198 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~ 198 (644)
..|++++|..-|....... .+......++..+.. ..+.......... .....|........+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET----------KPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc----------CCCCCCCHHHHHHHHHHc
Confidence 8888888777665443211 111111112211111 1222222222100 111112222111111111
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCc-cHHHHHHHH---HHhcCCHHHHHHHHhcCCC------CCHhHHHHHHHHHHHCC
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEV-GVGNTLIDA---YARGGHVDVSRKVFDGMIE------KDAVTWNSIIAIYAQNG 268 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g 268 (644)
. ......-+.... ...+.. ..+..+... ....+++++|.+.|+...+ .+...|+.+...+...|
T Consensus 272 ~----~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 272 R----PKPRPAGLEDSN--ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred c----CCcchhhhhccc--ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 1 000000000000 001110 011111111 1234678889998887743 24557888888889999
Q ss_pred ChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKA 347 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 347 (644)
++++|+..|++.. . ..|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...
T Consensus 346 ~~~eA~~~~~kal-~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 346 KHLEALADLSKSI-E--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred CHHHHHHHHHHHH-H--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887 2 3444 5577778888888999999999999988764 45677888899999999999999999
Q ss_pred HHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 348 FNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 348 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
|++..+ | +...|..+...+.+.|++++|+..|++..+. .+-+...+..+...+...|++++|+..|+.... +.
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~ 497 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LE 497 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cC
Confidence 998764 3 4567888888999999999999999998874 233567888888899999999999999999854 33
Q ss_pred CCh--------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 425 PGV--------EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 425 p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
|+. ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+..
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 321 11222233344579999999999885 45554 4578889999999999999999999999987764
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=7.1e-15 Score=159.39 Aligned_cols=434 Identities=9% Similarity=-0.012 Sum_probs=297.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSLTPTRS-TFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYS 119 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 119 (644)
|...|. ..+.|++..|+..|++..+. .|+.. ....++..+...|+.++|..+++..+.. ..........+...|.
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 444443 34788888888888888774 34431 2226777777778888888888887711 1122223333355777
Q ss_pred hCCChHHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHh
Q 006457 120 KCGELSDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSAC 198 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~ 198 (644)
..|++++|.++|+++.+..| |...+..++..|...++.++|++.++++. ...|+...+..++..+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~--------------~~dp~~~~~l~layL~ 179 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA--------------ERDPTVQNYMTLSYLN 179 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------ccCcchHHHHHHHHHH
Confidence 77888888888888877633 55666777778888888888888888854 3355555554343334
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CHhHHHH----HHHHHHH-------
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK-DAVTWNS----IIAIYAQ------- 266 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~------- 266 (644)
...++...|.+.++.+++.. +.+...+..++....+.|-...|.++..+-+.- +...+.- .+.-.++
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455545778888877764 456777788888888888888888887765431 1111100 0111111
Q ss_pred --CC---ChhHHHHHHHHhHHcCCCCCChh-----hHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 267 --NG---LAAEALDVFDQMVKSTDVKCNAV-----TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 267 --~g---~~~~A~~~~~~m~~~~~~~p~~~-----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
.. -.+.|+.-++.+....+-.|... ...-.+-++...++..++...++.+...+.+....+-.++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 11 23556666666653333334322 222345577888999999999999998887666678889999999
Q ss_pred hcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CCCHH-H
Q 006457 337 KCGQVDLARKAFNQMKEK---------NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-------------RPNYI-T 393 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t 393 (644)
..+++++|..+|.++... +......|.-+|...+++++|..+++++.+.-. .||-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 999999999999987532 222346788899999999999999999987311 12222 2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 471 (644)
+..++..+...|++.+|++.++.+.. .-+-|......+.+.+...|++.+|++.++.. ...|+ ..+......+...
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 33455667889999999999999954 23447888899999999999999999999766 34554 4466677778888
Q ss_pred cCChhHHHHHHHHhhccCCCCchh
Q 006457 472 HKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.+++.+|..+.+.+++..|+++..
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhH
Confidence 899999999999999999998743
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.3e-15 Score=164.79 Aligned_cols=327 Identities=11% Similarity=-0.012 Sum_probs=266.2
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAI 263 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 263 (644)
+..-...++..+.+.|++..|..++..++.... -+......++......|++++|...|+++.. .+...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344456677888899999999999999887653 3455566666777889999999999999843 366788899999
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCC-ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKC-NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 342 (644)
+.+.|++++|+..|++.. . +.| +...+..+...+...|++++|...+..+......+ ...+..+ ..+...|+++
T Consensus 120 l~~~g~~~~Ai~~l~~Al-~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 120 LLKSKQYATVADLAEQAW-L--AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHcCCHHHHHHHHHHHH-H--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHH
Confidence 999999999999999997 2 334 45677788889999999999999999887765333 3333333 3478899999
Q ss_pred HHHHHHHhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHH
Q 006457 343 LARKAFNQMKEK----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE----GWHWL 414 (644)
Q Consensus 343 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~ 414 (644)
+|...++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999987653 23344556778899999999999999999864 3356677888899999999986 89999
Q ss_pred HHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 415 NTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 415 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+.+.. +.| +...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++++.+|+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 98854 445 5778999999999999999999999987 34454 557778889999999999999999999999999
Q ss_pred CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 492 NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
++..+..++.++...|++++|.+.++...+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 87777778899999999999999999987654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=5.2e-14 Score=152.71 Aligned_cols=421 Identities=11% Similarity=0.046 Sum_probs=306.2
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHH-HH--HHHHHhCCChhH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWT-SM--LTGYVQNDNARE 159 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~l--i~~~~~~g~~~~ 159 (644)
..+.|+++.|.+.+.++++....-...++ .++..+...|+.++|+..+++... |+...+. .+ ...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 35889999999999999986522212345 888889999999999999999985 6444433 33 457888899999
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
|+++|+++... -+-|...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++.
T Consensus 121 Aiely~kaL~~-------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 121 ALALWQSSLKK-------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHHhh-------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 99999998631 1223455567777888899999999999888765 45555555555556556777
Q ss_pred HHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhH------HHHHH-HH----Hcccc
Q 006457 240 DVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTL------SAVLL-AI----AHLGV 305 (644)
Q Consensus 240 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~------~~ll~-a~----~~~~~ 305 (644)
.+|++.++++.+ | +...+..+..+..+.|-...|+++..+-. . -+.+...-. ...+. +. ....+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-~-~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP-N-LVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc-c-ccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 679999999843 3 66778888999999999999998776543 1 122221111 11110 00 01122
Q ss_pred ---HHHHHHHHHHHHHh-CC-CCchhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCCC--h--hhHHHHHHHHHhcCCH
Q 006457 306 ---LRLGKCIHDQVIKM-DL-EESVIV-GTS---IIDMYCKCGQVDLARKAFNQMKEKN--V--RSWTAMIAGYGMHCRA 372 (644)
Q Consensus 306 ---~~~a~~i~~~~~~~-~~-~~~~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~~~~g~~ 372 (644)
.+.|..-++.+... +- ++.... ..+ .+-++.+.|++.++.+.|+.+..+. + .+--++.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23444444444431 22 222222 223 3446778899999999999998542 2 3456788999999999
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC----------CCCC---hhHHHHHH
Q 006457 373 REALDLFYKMIKAG-----VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN----------IEPG---VEHYGCMV 434 (644)
Q Consensus 373 ~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li 434 (644)
++|+.+|+++.... ..++......|..++...+++++|..+++.+.+... -.|+ ...+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999997643 122344457889999999999999999999965211 0122 23455677
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 512 (644)
..+...|++.+|++.++++ ...| |...+..+...+...|....|+..++.+..++|++.......+.++...|+|.+|
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 8889999999999999988 2334 7778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 006457 513 ERTRSLMKNRR 523 (644)
Q Consensus 513 ~~~~~~m~~~~ 523 (644)
.++.+.+.+.-
T Consensus 504 ~~~~~~l~~~~ 514 (822)
T PRK14574 504 ELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhhC
Confidence 99998876543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.2e-14 Score=147.53 Aligned_cols=435 Identities=10% Similarity=0.047 Sum_probs=277.7
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC--eecHHHH
Q 006457 72 TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRD--VFVSSALIDMYSKCGELSDARKLFDEIPQRIRN--IVSWTSM 147 (644)
Q Consensus 72 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l 147 (644)
|+...+.|-+-+.-.+++..+..+...++....... ...|--+..+|...|++++|...|.+.....++ +..+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 455555566666666677777776666665432111 223445666777777777777776665544232 3344456
Q ss_pred HHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCC----CchHHHHHHHHHHHhCCCCCc
Q 006457 148 LTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVT----VNGVTEGAHGFVIKRGFDSEV 223 (644)
Q Consensus 148 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~ 223 (644)
...|.+.|+.+.+...|+.... ..+-+..|...+-..|+..+ ..+.|..+.....+.- +.|.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k-------------~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLK-------------QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHH-------------hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 6677777777777777777541 12223344444444444443 2333444444333332 3345
Q ss_pred cHHHHHHHHHHhcCCH------HHHHHHHhcC-CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcC--CCCCCh----
Q 006457 224 GVGNTLIDAYARGGHV------DVSRKVFDGM-IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKST--DVKCNA---- 290 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~------~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~---- 290 (644)
..|-.+..+|-...-+ ..|..++..- ....+...|.+...+...|.+.+|...|....... ...+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 5555555555444332 2233222221 23456777888888888888888888888876220 122333
Q ss_pred -h-hHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 006457 291 -V-TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAG 365 (644)
Q Consensus 291 -~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 365 (644)
. +--.+....-..++.+.|.+++..+.+.. +.-+..|--|.-+....+...+|...+..... .|+..|+-+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 1 22223344456678888888888888754 22222233333222333567788888877664 466778778878
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHhhhcCCCCChhHHHH
Q 006457 366 YGMHCRAREALDLFYKMIKA-GVRPNYITFVSVLSACSH------------AGLVQEGWHWLNTMGHEFNIEPGVEHYGC 432 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 432 (644)
|.....+..|.+-|....+. ...+|.++..+|.+.|.. .+..++|+++|..+.+ .-+.|...-+-
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccc
Confidence 88888888888877766542 234788888888876643 2356788888888755 33446777788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC--CCCchhHHHHHHHHhhcCC
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE--PNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 508 (644)
+.-.++..|++.+|.++|.+.. ...+..+|-.+...|...|++..|.++|+..++.. .+++.....|+.++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 8889999999999999999873 22245689999999999999999999999998753 4567888899999999999
Q ss_pred chHHHHHHHHHhhCC
Q 006457 509 WEDVERTRSLMKNRR 523 (644)
Q Consensus 509 ~~~a~~~~~~m~~~~ 523 (644)
|.+|.+.........
T Consensus 732 ~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888776543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.7e-13 Score=138.47 Aligned_cols=479 Identities=11% Similarity=0.054 Sum_probs=334.4
Q ss_pred chHHHHHHhhcCCC-CCcchHHHHHHHH--HcCCCchHHHHHHHHhhHCC--CCCCcccHHHHHHHHhccCCcHHHHHHH
Q 006457 22 NTNLTTLFNKYVDK-NNVFSWNSVIADL--ARGGDSVEALRAFSSMRKLS--LTPTRSTFPCAIKSCSALHDLHSGKQAH 96 (644)
Q Consensus 22 ~~~A~~~f~~~~~~-p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 96 (644)
.+.|.+.|...... |+- ..--+..++ ...+++..|+.+|....... .+||+.. .+-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 58888888876543 222 233344444 35689999999999976532 3444432 2234556889999999999
Q ss_pred HHHHHhCCCCC-hhHHHHHHHHHHhC---CChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhh
Q 006457 97 QQAFIFGFHRD-VFVSSALIDMYSKC---GELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEE 171 (644)
Q Consensus 97 ~~~~~~g~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 171 (644)
..+++.. |+ +.++-.|--.-... ..+..+..++...-.. ..|++..+.|.+.|.-.|++..+..+...+...
T Consensus 223 ~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~- 299 (1018)
T KOG2002|consen 223 ERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN- 299 (1018)
T ss_pred HHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh-
Confidence 9998754 32 22222222111122 2344555555544333 468899999999999999999999999888631
Q ss_pred hccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006457 172 SECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEV--GVGNTLIDAYARGGHVDVSRKVFDGM 249 (644)
Q Consensus 172 ~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~ 249 (644)
...-..-...|-.+-+++-..|+++.|.+.|-...+. .++. ..+--|..+|.+.|+++.+...|+.+
T Consensus 300 ---------t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 300 ---------TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred ---------hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 1011112345677888888999999999999777665 4444 34556889999999999999999998
Q ss_pred CC--C-CHhHHHHHHHHHHHCC----ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHH----HH
Q 006457 250 IE--K-DAVTWNSIIAIYAQNG----LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQV----IK 318 (644)
Q Consensus 250 ~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~ 318 (644)
.. | +..+...|...|+..+ ..++|..++.+..+ ..+-|...|..+...+... ++..+...+..+ ..
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILES 445 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHH
Confidence 33 3 5566667777777765 45777777777762 2244666676666665443 333335555444 34
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 319 MDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-------KNV------RSWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
.+-++.+.+.|.+...+...|++++|...|.+... +|. .+--.+...+-..++.+.|.+.|....+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 56567888999999999999999999999987653 222 12333555666778999999999999985
Q ss_pred CCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHH
Q 006457 386 GVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KVKADFV 460 (644)
Q Consensus 386 g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~ 460 (644)
-|..+ .|..++...-..+...+|...+..... ....++..++.+.+.+.+...+..|.+-|+.. ...+|..
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 56655 344444333345778899999988865 44556677777888888888888888755443 3447877
Q ss_pred HHHHHHHHHHh------------cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 461 VWGSLLGACRI------------HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 461 ~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
+.-+|.+.|.. .+..+.|++.|.++++.+|.|..+-..++-+++..|++.+|..+|.+.++...
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 77777776642 23567899999999999999999999999999999999999999999998765
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.2e-12 Score=123.94 Aligned_cols=334 Identities=14% Similarity=0.157 Sum_probs=241.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh--ccCCcHHH-HHHHHHHHHhCCCCChhHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS--ALHDLHSG-KQAHQQAFIFGFHRDVFVSSA 113 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 113 (644)
.+++=|.|+.. ..+|..+++.-+|+.|+..|+..+...-..|++..+ ...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 34566777664 467889999999999999997776665555554332 33333322 23344444444 2233333
Q ss_pred HHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHH
Q 006457 114 LIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIAS 193 (644)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ 193 (644)
+.|++.+ -+|+..+ ....+|..||.+.++--..+.|.+++++-. ....+.+..+|+.
T Consensus 191 ------K~G~vAd--L~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~------------~~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHR------------AAKGKVYREAFNG 247 (625)
T ss_pred ------ccccHHH--HHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHH------------HhhheeeHHhhhh
Confidence 3455444 5565555 477899999999999999999999999988 8888999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHH----hcC----CCCCHhHHHHHHHHHH
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVF----DGM----IEKDAVTWNSIIAIYA 265 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~ 265 (644)
+|.+.+-. .++.+..+|+...+.||..++|+++.+.++.|+++.|.+.+ .+| .+|...+|..+|..+.
T Consensus 248 lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 99886543 34889999999999999999999999999999988776544 444 6789999999999999
Q ss_pred HCCChhH-HHHHHHHhHH---cCCCCC----ChhhHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCc---hhHHHH
Q 006457 266 QNGLAAE-ALDVFDQMVK---STDVKC----NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD----LEES---VIVGTS 330 (644)
Q Consensus 266 ~~g~~~~-A~~~~~~m~~---~~~~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~~~---~~~~~~ 330 (644)
+-++..+ |..++.++.. ...++| |...|...+..|.+..+.+.|.+++..+.... +.|+ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 9888755 4444454431 112222 45678889999999999999999998775421 2232 234566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 331 IIDMYCKCGQVDLARKAFNQMKE----KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
+..+.+.....+.-...|+.|.. |+..+-..++.+....|+++-.-++|..|...|..-+.....-++.-.
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 77888888889999999998874 566777778888888888888888888888877544444333333333
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=5.3e-13 Score=126.17 Aligned_cols=256 Identities=16% Similarity=0.189 Sum_probs=176.6
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCC
Q 006457 25 LTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGF 104 (644)
Q Consensus 25 A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 104 (644)
|.-+|+..|. ...+|..||.++|+--..+.|.+++++......+.+..+||.+|.+.+- ..++++..+|+...+
T Consensus 196 AdL~~E~~PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 ADLLFETLPK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM 269 (625)
T ss_pred HHHHHhhcCC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc
Confidence 3345554443 4568999999999999999999999999988789999999999987653 334899999999999
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHH----HHhhCCCC--CCCeecHHHHHHHHHhCCChhH-HHHHHHHhHhhhhccCCC
Q 006457 105 HRDVFVSSALIDMYSKCGELSDARK----LFDEIPQR--IRNIVSWTSMLTGYVQNDNARE-ALLLFKEFLLEESECGGA 177 (644)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~ 177 (644)
.||..|+|+++...++.|+++.|.+ ++.+|++. .|...+|..+|..+.+.+++.+ |..++.+++..-.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt----- 344 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT----- 344 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc-----
Confidence 9999999999999999999887665 45555554 6899999999999999988854 4444554431100
Q ss_pred CCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhC----CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 006457 178 SENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRG----FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK 252 (644)
Q Consensus 178 ~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 252 (644)
......+.| |..-|...++.|.+..+.+.|.+++..+.... +.|+..
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~---------------------------- 396 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH---------------------------- 396 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------
Confidence 000122233 56678889999999999999999988764321 111100
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD 320 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 320 (644)
...-|..+....++....+.-+..|..|. -.-.-|+..+...+++|....+.++...+++..++..|
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 11223334444445555555555555555 44455555666666666655566666656655555544
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.9e-11 Score=121.76 Aligned_cols=488 Identities=11% Similarity=0.066 Sum_probs=358.1
Q ss_pred HhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHH
Q 006457 17 DKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQ 94 (644)
Q Consensus 17 ~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 94 (644)
...-..++|+-++.+..+- | ++..|. +|++..-++.|..+++..++. ++.+...|.+....=-..|+.+....
T Consensus 387 VelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3344555677666665431 1 233333 444555677777777777653 44466666665555556666666666
Q ss_pred HHHHHH----HhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHH
Q 006457 95 AHQQAF----IFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKE 166 (644)
Q Consensus 95 ~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 166 (644)
+.+.-+ ..|+..+...|-.=...+-+.|..-.+..+...+... ..--.+|+.-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 655433 3466666666666666666666666666655544332 12345677777777777777777777776
Q ss_pred hHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 006457 167 FLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKV 245 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (644)
.+ .+-| +...|..+...--..|..+....++..++..- +-....|-....-+-..|++..|..+
T Consensus 542 al--------------qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 542 AL--------------QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred HH--------------hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 53 2233 34445545444455667777777777666542 33455666667777888999999999
Q ss_pred HhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 246 FDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 246 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
+....+ .+...|-+-+..-..+.+++.|..+|.+.. ...|+...|.--+..---.+..++|.+++++.++. ++
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp 682 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FP 682 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CC
Confidence 888733 367789999999999999999999999987 46677777766666666788999999999988885 34
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
.-...|-.+...+-..++++.|++.|..-.+ |+ +..|-.+...=-+.|..-.|..++++..-.+ +-|...|...+.
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 5566788888999999999999999987664 44 4578888887788899999999999998764 557889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
.-.+.|+.++|..+..++.+ ..+.+...|..-|.+..+.++--.+.+.+++... |+.+.-+....+....+++.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877 4666788899999999999998888888888753 5556666777788888999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEe
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVEL 535 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 535 (644)
+.|+++++.+|++..++..+...+...|.-++-.++++...... |.-|..|..+
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 99999999999999999999999999999999999998876543 4456666543
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=7.1e-13 Score=126.05 Aligned_cols=463 Identities=11% Similarity=0.078 Sum_probs=306.5
Q ss_pred hHHHH---HHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCCh----hHH
Q 006457 40 SWNSV---IADLARGGDSVEALRAFSSMRKLSLTPTRSTFPC-AIKSCSALHDLHSGKQAHQQAFIFGFHRDV----FVS 111 (644)
Q Consensus 40 ~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~ 111 (644)
+|+.| .+-|..+....+|+..|+-+.+...-||.-.+.. +-+.+.+.+.+..|.+.+...+..-...+. .+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 45544 4456667778899999998888777777654432 234556778889999999888765322222 234
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhH
Q 006457 112 SALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAI 191 (644)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~ 191 (644)
+.+--.+.+.|+++.|..-|+...+..||..+--.|+-.+..-|+.++..+.|.+|..-.........-...-.|+...+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 44445678899999999999988776677665444555555678889999999998732111100001122223444444
Q ss_pred HHHHH-----HhhcCCC--chHHHHHHHHHHHhCCCCCccH-------------HH--------HHHHHHHhcCCHHHHH
Q 006457 192 ASVLS-----ACSRVTV--NGVTEGAHGFVIKRGFDSEVGV-------------GN--------TLIDAYARGGHVDVSR 243 (644)
Q Consensus 192 ~~ll~-----~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~-------------~~--------~li~~~~~~g~~~~A~ 243 (644)
+..+. -..+... .+++.-.-..++.--+.|+-.. +. .-..-|.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 43332 2222211 1111111111111112222110 00 1122467889999998
Q ss_pred HHHhcCCCCCHhHHHHH-----HHHHHHC-CChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHH
Q 006457 244 KVFDGMIEKDAVTWNSI-----IAIYAQN-GLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVI 317 (644)
Q Consensus 244 ~~~~~~~~~~~~~~~~l-----i~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 317 (644)
+++.-...+|..+-++. +--|.+- .++.+|.+.-+.... .-+-+......-.+.....|+++.|...+.+.+
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 88887766544332221 2223333 345666655554441 112222222222223345689999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF 394 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 394 (644)
...-.-....|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...+...|++++-+.... ++.|+..+
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 765444444555 3345678899999999998765 356667777888899999999999999877653 55578888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-Hhc
Q 006457 395 VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK-VKADFVVWGSLLGAC-RIH 472 (644)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~-~~~ 472 (644)
.-|...|-+.|+-.+|.+++-.--+ -++-+.++..-|..-|....-+++|+.+|++.. ++|+..-|..++..| ++.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 8999999999999999998766522 345578888888889999999999999999874 799999999999666 788
Q ss_pred CChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 473 KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
|++..|..+++...+..|.+....-.|..++...|.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999999888884
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=1e-11 Score=128.58 Aligned_cols=331 Identities=12% Similarity=0.143 Sum_probs=194.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhc
Q 006457 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSA 85 (644)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 85 (644)
..-...+.+...|+.++|.+++.++... | +...|.+|...|-+.|+.++++..+-..-... +-|...|..+-.-...
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3344445555569999999999987542 2 67789999999999999999988776555432 2255677777777888
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC--Cee----cHHHHHHHHHhCCChhH
Q 006457 86 LHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR--NIV----SWTSMLTGYVQNDNARE 159 (644)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~li~~~~~~g~~~~ 159 (644)
.|.+.+|.-.+..+++.. +++....-.-..+|-+.|+...|..-|.++....| |.. .--..++.|...++.+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 899999999999999876 44555555567788888999988888777765422 111 11122344444555566
Q ss_pred HHHHHHHhHhhhhcc---------------------------------CCCCCCC-------------CCccCCHhhH--
Q 006457 160 ALLLFKEFLLEESEC---------------------------------GGASENS-------------DNVFVDSVAI-- 191 (644)
Q Consensus 160 A~~~~~~m~~~~~~~---------------------------------~~~~~~~-------------~~~~p~~~t~-- 191 (644)
|++.+......+... ...+... .--.|+...|
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 666555554211000 0000000 0000111111
Q ss_pred --HHHHHHhhcCCCchHHHHHHHHHHHhCCCC--CccHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHH
Q 006457 192 --ASVLSACSRVTVNGVTEGAHGFVIKRGFDS--EVGVGNTLIDAYARGGHVDVSRKVFDGMIE----KDAVTWNSIIAI 263 (644)
Q Consensus 192 --~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~ 263 (644)
.-+.-+..+....+....+.....+..+.| ++..+.-+.++|...|++.+|.++|..+.. .+...|--+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 112223344445555555555555555332 345566677777777777777777776633 255667777777
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhC--------CCCchhHHHHHHHH
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--------LEESVIVGTSIIDM 334 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--------~~~~~~~~~~li~~ 334 (644)
|...|.+++|++.|.... ...|+ .-.-.++-..+.+.|+.++|.+.+..+..-+ ..|.....-...+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl---~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVL---ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHhhHHHHHHHHHHHH---hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 777777777777777766 22333 2233344455566677777777776654211 22333333444555
Q ss_pred HHhcCCHHH
Q 006457 335 YCKCGQVDL 343 (644)
Q Consensus 335 ~~~~g~~~~ 343 (644)
|.+.|+.++
T Consensus 536 l~~~gk~E~ 544 (895)
T KOG2076|consen 536 LFQVGKREE 544 (895)
T ss_pred HHHhhhHHH
Confidence 556665544
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=9.9e-10 Score=109.80 Aligned_cols=422 Identities=11% Similarity=0.109 Sum_probs=330.3
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHH
Q 006457 82 SCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREA 160 (644)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 160 (644)
+.....+.+.|+-++....+.- +.+.. |.-+|++..-++.|..+++...+. +.+...|.+-...=-.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3344556666888888877753 33333 444566677889999999888776 45788888877777788999888
Q ss_pred HHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhcCC
Q 006457 161 LLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSE--VGVGNTLIDAYARGGH 238 (644)
Q Consensus 161 ~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~ 238 (644)
.+++.+-...- ...|+..+...|..=..+|-..|..-.+..+....+..|+... -.+|+.-...|.+.+.
T Consensus 460 ~kii~rgl~~L--------~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 460 EKIIDRGLSEL--------QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHHHHHHH--------hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 88877644221 1778999999998888899999999999999998888887543 4578888889999999
Q ss_pred HHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 239 VDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 239 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
++-|..+|....+ .+...|...+..--..|..++-..+|++... ..+-....+.......-..|++..|+.++..
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999987744 3667788877777778899999999999872 3344445555555666677999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H
Q 006457 316 VIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-I 392 (644)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 392 (644)
+.+.. +.+...+-+-+..-....+++.|+.+|.+... +....|.--+..-.-.++.++|++++++.++. -|+- .
T Consensus 610 af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 610 AFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 98876 44788888999999999999999999998764 56677777777777788999999999998874 4554 4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 470 (644)
.|..+...+-+.++++.|...|..=.+ ..+-....|-.|...=.+.|.+-.|..++++.. .+.|...|-..+..-.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 677777888889999999988876533 233457788888888899999999999999873 3447889999999999
Q ss_pred hcCChhHHHHHHHHhhccCCC------------------------------CchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 471 IHKNVDLGEIAAKKLFELEPN------------------------------NCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
++|+.+.|..+..++++--|+ |+.....++.++....+++.|++.|....
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888874443 35566677788888888999999988887
Q ss_pred hCC
Q 006457 521 NRR 523 (644)
Q Consensus 521 ~~~ 523 (644)
+.+
T Consensus 845 k~d 847 (913)
T KOG0495|consen 845 KKD 847 (913)
T ss_pred ccC
Confidence 654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=1.9e-14 Score=140.32 Aligned_cols=254 Identities=15% Similarity=0.108 Sum_probs=111.5
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH-HHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA-VLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 339 (644)
...+.+.|++++|++++++.. ....+|+...|-. +...+...++.+.|...++.+...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~-~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAA-QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 455666677777777775443 2222344444333 333444566777777777777665422 45556667666 6788
Q ss_pred CHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006457 340 QVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG-VRPNYITFVSVLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 340 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (644)
++++|.+++...-+ ++...+..++..+.+.|+++++.+++++..... .+++...|..+...+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876533 466677888888999999999999999977533 345677788888889999999999999999
Q ss_pred HhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 417 MGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 417 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
..+ ..| +......++..+...|+.+++.+++.... ...|...|..+..++...|+.++|...++++.+.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 965 456 47788899999999999999888877652 234666889999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.....++.++...|+.++|.+++++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987754
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=7.2e-10 Score=106.67 Aligned_cols=486 Identities=11% Similarity=0.074 Sum_probs=342.3
Q ss_pred HHhcCCchHHHHHHhhcCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHH
Q 006457 16 VDKHSTNTNLTTLFNKYVD---KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSG 92 (644)
Q Consensus 16 ~~~~~~~~~A~~~f~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 92 (644)
--.+++...|+.+|++... + +...|-.-+..-.++.....|..+|+.....=++.|..=|-. +-.=-..|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHH
Confidence 3346788899999998653 4 777888888888999999999999999876433333332322 2222356899999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhh
Q 006457 93 KQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEES 172 (644)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 172 (644)
+++|+.-.. ..|+...|++.|+.=.+-..++.|..+++...--.|++.+|--...-=-+.|+...|..+|......
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 999998886 4799999999999999999999999999987655699999988888888899999999998886521
Q ss_pred ccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHhcCCHHHHHHHH---h
Q 006457 173 ECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSE--VGVGNTLIDAYARGGHVDVSRKVF---D 247 (644)
Q Consensus 173 ~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~---~ 247 (644)
...-..+...|.+...--.+....+.|.-++..++..= +.+ ...|..+...=-+-|+.....+.. +
T Consensus 237 --------~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 237 --------LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 11111122223333333334566778888888877652 222 345555555555556543333222 2
Q ss_pred c-----CCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChh-------hHHHHHHHH---HccccHHHH
Q 006457 248 G-----MIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAV-------TLSAVLLAI---AHLGVLRLG 309 (644)
Q Consensus 248 ~-----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-------t~~~ll~a~---~~~~~~~~a 309 (644)
+ +... |-.+|-..+..--..|+.+...++|+... .+++|-.. .|.-+=-+| ....+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2 2222 66788888888888899999999999996 46777432 222222222 356789999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYC----KCGQVDLARKAFNQMK--EKNVRSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
+++++..++ -++...+++.-+=-+|+ ++.++..|.+++.... .|-..++...|..=.+.++++....+|++.+
T Consensus 386 r~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988 34555666665555554 6789999999998766 3677788888888889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 006457 384 KAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVW 462 (644)
Q Consensus 384 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 462 (644)
.-+ +-|..+|......-...|+.+.|..+|..++.+..+......|.+.|+.=..+|.++.|..+++++ ...+-..+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 854 447788888888888899999999999999776555555678889999999999999999999887 233445578
Q ss_pred HHHHHHHH-----hcC-----------ChhHHHHHHHHhhcc----CCCCc--hhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 463 GSLLGACR-----IHK-----------NVDLGEIAAKKLFEL----EPNNC--GYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 463 ~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
-++...-. ..+ +...|..+|+++... .|... ...-...++-...|...+...+-..|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 77764443 333 556788888887652 34321 122223333455666666666666664
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=5.1e-11 Score=123.45 Aligned_cols=330 Identities=16% Similarity=0.115 Sum_probs=252.6
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHCCChhHHH
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM---IEKDAVTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 274 (644)
+++ |+++.|.+++.++++.. +.....|..|...|-..|+.+++...+--. ...|...|-.+..-..+.|.+++|.
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 444 99999999999999885 557788999999999999999998776443 4558889999999999999999999
Q ss_pred HHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCCHHHHHHHHHh
Q 006457 275 DVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGT----SIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~ 350 (644)
-.|.+.. +. -+++...+---...|-+.|+...|..-+.++.....+.|..-.. ..+..|...++-+.|.+.++.
T Consensus 228 ~cy~rAI-~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAI-QA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHH-hc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999998 32 35555566666778899999999999999998865433433333 345667777888899888887
Q ss_pred cCC--C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHH
Q 006457 351 MKE--K---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF--------------------------VSVLS 399 (644)
Q Consensus 351 ~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ll~ 399 (644)
... . +...++.++..|.+...++.|......+......+|..-+ .-+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 664 2 4457889999999999999999988888762222222211 11222
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCC
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEP--GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVK---ADFVVWGSLLGACRIHKN 474 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~ll~~~~~~g~ 474 (644)
+..+....+....+...... ..+.| +...|.-+.++|...|++.+|+.+|..+... -+...|--+...+...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33344333333333333333 35334 5788999999999999999999999988322 267799999999999999
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
+++|.+.+++++.+.|++..+.+.|+.+|.+.|+.++|.+.+..|..-+....+++.|
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999999987444333345544
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.6e-10 Score=111.65 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=168.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.|+.-.+..-++..++....++ ..|--+..+|....+.++..+.|+...+ .|..+|..-.+.+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4667777777887777653332 2366667778888899999999987764 36667777777777778899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 006457 380 YKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA 457 (644)
Q Consensus 380 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 457 (644)
++.+. +.| +...|..+-.+.-+.+.++++...|+..++ .++.-++.|+.....+.-.+++++|.+.|+.. ...|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99887 455 456777777777888999999999999976 46667889999999999999999999999876 3344
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 458 D---------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 458 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+ +.+-..++..- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 22333333332 44899999999999999999999999999999999999999999998764
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.5e-11 Score=117.12 Aligned_cols=430 Identities=12% Similarity=0.103 Sum_probs=286.1
Q ss_pred ccHHHHHH---HHhccCCcHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChHHHHHHHhhCCCCCCC------eec
Q 006457 74 STFPCAIK---SCSALHDLHSGKQAHQQAFIFGFHRDVFVS-SALIDMYSKCGELSDARKLFDEIPQRIRN------IVS 143 (644)
Q Consensus 74 ~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~ 143 (644)
.||+.|.+ -|.......+|...++-+++...-|+.... -.+-+.|.+...+.+|.++++-.....|+ +..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 35655544 334445567788888888887766665432 23456678888999999988665544332 234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCc
Q 006457 144 WTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEV 223 (644)
Q Consensus 144 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 223 (644)
.+.+.-.+.+.|++++|+..|+... ...||-.+-..++-.+...|+.++.++.|..++.....+|.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m--------------~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dd 344 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCM--------------EEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDD 344 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHH--------------HhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCc
Confidence 5566667889999999999999865 34688777777777777789999999999988764322222
Q ss_pred cH--------HHHHHHHHHhc---------CC--HHHH----HHHHhcCCCCCHh---HHH----------H--------
Q 006457 224 GV--------GNTLIDAYARG---------GH--VDVS----RKVFDGMIEKDAV---TWN----------S-------- 259 (644)
Q Consensus 224 ~~--------~~~li~~~~~~---------g~--~~~A----~~~~~~~~~~~~~---~~~----------~-------- 259 (644)
.- -..|++--.+. .+ .+.+ .++..-+..||-. -|. .
T Consensus 345 dkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 345 DKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 11 12222222221 11 1111 2222222333211 011 0
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCChhh--HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT--LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
-...|.++|+++.|+++++-.. ...-+.-+.. -...+.-.....++..|.++-+..+... .-+....+.-.+.-..
T Consensus 425 ka~~~lk~~d~~~aieilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 1235789999999999998886 3322222211 1122222223345667776666555432 1122222222223345
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKEKNVRSWTAMIA---GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.|++++|.+.|.+....|...-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 789999999999998887665444433 466789999999999988753 3456778888899999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh-CCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 415 NTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG-MKV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
..... -++.|+.+.+.|.+.|-+.|+-..|.+..-. ... +.|..+..-|...|....-++.++..|+++--+.|+.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 87732 4555789999999999999999999987544 332 3355566667777777788899999999999999987
Q ss_pred chhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 493 CGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..-...++.++.+.|++..|..+++...++
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 655566777888999999999999998754
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=7.5e-11 Score=121.55 Aligned_cols=447 Identities=13% Similarity=0.087 Sum_probs=244.9
Q ss_pred HHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCC
Q 006457 59 RAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRI 138 (644)
Q Consensus 59 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 138 (644)
.++-.+...|+.||.+||..+|..|+..|+.+.|- +|..|.....+....+++.++.+....++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-- 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-- 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C--
Confidence 45667777888888888888888888888888777 8888877777777788888888887778777665 3
Q ss_pred CCeecHHHHHHHHHhCCChhHHHHHHHH-hH---hhhhccCCCC---------CCCCCccCCHhhHHH----------HH
Q 006457 139 RNIVSWTSMLTGYVQNDNAREALLLFKE-FL---LEESECGGAS---------ENSDNVFVDSVAIAS----------VL 195 (644)
Q Consensus 139 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~---~~~~~~~~~~---------~~~~~~~p~~~t~~~----------ll 195 (644)
|...+|+.|..+|.+.|+... ++..++ |. ..-......+ --..+.-||..+... ++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887654 222222 11 1100000000 001223344332211 11
Q ss_pred HHh------hcCC-----------CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CH
Q 006457 196 SAC------SRVT-----------VNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK----DA 254 (644)
Q Consensus 196 ~~~------~~~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 254 (644)
+.. +..+ +..-.+++.......--.+++.++.++++.-...|+++.|..++.+|.++ +.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 111 0000 11112233332222211466777777777777777777777777777543 12
Q ss_pred -hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHH-----------HHHHHHH----
Q 006457 255 -VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKC-----------IHDQVIK---- 318 (644)
Q Consensus 255 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~-----------i~~~~~~---- 318 (644)
..|- |+-+ .+....+..+++.|. ..|+.|++.|+..-+..+...|....+.. +...+.+
T Consensus 240 HyFwp-Ll~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 240 HYFWP-LLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccchh-hhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 2232 3322 555666666666666 66777777777776666666554332211 0111110
Q ss_pred ---------------------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHhcC
Q 006457 319 ---------------------MDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-------NVRSWTAMIAGYGMHC 370 (644)
Q Consensus 319 ---------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g 370 (644)
.|+.....+|...+. ....|.-++..++-..+..| ++..|..++.-|-+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 011111222221111 11234444444444444322 2223333322221110
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHH
Q 006457 371 ----------------------RAREALDLFYKMIKAGVRPNYI----------------------------TFVSVLSA 400 (644)
Q Consensus 371 ----------------------~~~~A~~~~~~m~~~g~~p~~~----------------------------t~~~ll~a 400 (644)
...+..++... ..||.. .-+.++..
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 11111111111 122211 12233344
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCh
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK-----VKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~ 475 (644)
|+..-+..+++..-+.. +..-+ ...|..||+.+.....+++|..+..+.. ..-|..-+..+.....+++..
T Consensus 469 l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 44444444444333332 11111 2578899999999999999999998873 223555677888888899988
Q ss_pred hHHHHHHHHhhcc---CCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 476 DLGEIAAKKLFEL---EPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 476 ~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
..+..+++++.+. .|.......-+.+..+..|+.+...++.+-+..-|+.. .|.-|
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8888888877663 34445666677777888999999999999999888865 34434
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=6.4e-13 Score=129.62 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=86.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHH-HhhcCCCchHHHHHHHHHHHhCCCCCcc
Q 006457 146 SMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLS-ACSRVTVNGVTEGAHGFVIKRGFDSEVG 224 (644)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 224 (644)
.+...+.+.|++++|++++++-. ....+|+...|..++. .+...++.+.|.+.++.+.+.+-. ++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~------------~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~ 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAA------------QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc------------ccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 34666778888888888886542 2222455555554444 344567777888887777766522 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMI--EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 302 (644)
.+..++.. ...+++++|.+++...- .++...+..++..+.+.++++++.++++........+++...|..+...+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 56666666 57777777777776652 2355666677777777778877777777765333344556666666677777
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.|+.++|...++..++.. |.+..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+.+|
T Consensus 159 ~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 777777777777777654 3345666667777777777776666655443 245556667777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTM 417 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (644)
++..+.. +.|......+..++...|+.++|.++...+
T Consensus 238 ~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 238 EKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccc
Confidence 7766642 335666666667777777777777666655
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=7.8e-11 Score=120.37 Aligned_cols=274 Identities=10% Similarity=0.038 Sum_probs=173.5
Q ss_pred cCCHHHHHHHHhcCCCC--CHh-HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHH--HHHHHHHccccHHHHH
Q 006457 236 GGHVDVSRKVFDGMIEK--DAV-TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLS--AVLLAIAHLGVLRLGK 310 (644)
Q Consensus 236 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~--~ll~a~~~~~~~~~a~ 310 (644)
.|+++.|++.+...++. ++. .|-....+..+.|+++.|.+.|.++. ...|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~---~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA---ELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777776665432 122 23222333467777777777777775 2344443322 2244556677777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHH
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNV-----------RSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
..++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776655 44566667777777777777777777777664221 12333333333444455556666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD 458 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 458 (644)
+.+.+. .+.+......+..++...|+.++|...++...+ ..|+.... ++.+....++.+++++.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 655432 344666777777888888888888888877744 34444322 222333457888888777765 33443
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 459 -FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 459 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.....++...|...+++++|.+.++++++..|++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677788888888888888888888888875 456778888888888888888877653
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.3e-11 Score=123.89 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=168.1
Q ss_pred ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--LEESVIVGTSIIDMYCKCGQVDLARK 346 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 346 (644)
+..+|+.+|.... ..+.-+......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+..--+
T Consensus 334 ~~~~A~~~~~klp--~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLP--SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhH--HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567777777743 3334444666777778888888888888888877643 12345666666544332211111111
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC
Q 006457 347 AFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP 425 (644)
Q Consensus 347 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 425 (644)
-+-.+......+|-++..+|.-+++.+.|++.|++..+ +.| ..++|+-+..-+.....+|.|...|+.. +..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcC
Confidence 11112223456888888888888888888888888877 455 5677777777777777888888888766 335
Q ss_pred ChhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 426 GVEHYGC---MVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 426 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
|+.+|++ |.-.|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|++++++++.++|.++..-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5556655 456688888888888888876 5566 4445555667777888888888888888888888888888888
Q ss_pred HHHhhcCCchHHHHHHHHHhh
Q 006457 501 NIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++...+++++|.+.++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 888888888888888888875
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.2e-10 Score=106.56 Aligned_cols=300 Identities=14% Similarity=0.127 Sum_probs=189.0
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHCC
Q 006457 195 LSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK------DAVTWNSIIAIYAQNG 268 (644)
Q Consensus 195 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g 268 (644)
..++......+.+.+-.......|++.+...-+-...+.-...++|.|+.+|+++.+. |..+|+.++ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3344455566666666666677777766666666666666777888888888887543 445666555 33333
Q ss_pred ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAF 348 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 348 (644)
+.. +..+.+-. ..--+--+.|...+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|.+-+
T Consensus 312 ~sk--Ls~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSK--LSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHH--HHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 221 12221111 11112233466666677777777788888888877765 445667777777788888888888777
Q ss_pred HhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 349 NQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 349 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
+...+ .|-..|-.|.++|.-.+...-|+-.|++..+. +| |+..|.+|..+|.+.++.++|+..|..... .-.
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~d 463 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGD 463 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccc
Confidence 76654 46677777888888888777788888877773 44 667777888888888888888888877754 223
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGM-------K-VKADFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.+...+..|.++|-+.++.++|...|.+. + +.|..+ .---|..-+.+.+++++|.....+...-++
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~----- 538 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET----- 538 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----
Confidence 35567777788888888888877776654 1 222111 111133455666777766555444433322
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 496 HVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..++|..+++++++
T Consensus 539 ------------e~eeak~LlReir~ 552 (559)
T KOG1155|consen 539 ------------ECEEAKALLREIRK 552 (559)
T ss_pred ------------hHHHHHHHHHHHHH
Confidence 24666666666654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=1.4e-10 Score=118.55 Aligned_cols=255 Identities=11% Similarity=0.014 Sum_probs=152.8
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHH--HHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhH
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGN--TLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAE 272 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 272 (644)
..+.|+.+.+.+.+..+.+. .|+..... .....+...|+++.|...++.+.+ .++.....+...|.+.|++++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 34555555555555555432 23332221 223455555555555555555422 134445555555555555555
Q ss_pred HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
|.+++..+. +.+..++. ....+- ...|..++.......+.+...++++.++
T Consensus 206 a~~~l~~l~-k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 206 LLDILPSMA-KAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHH-HcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 555555554 22221111 010000 0122233333334445566666666665
Q ss_pred C---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 353 E---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 353 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
+ .+......+..++...|+.++|.+++++..+. +||.... ++.+....++.+++.+..+...+. .+-|...
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHH
Confidence 3 36667777888888888888888888888773 4555222 233444558888888888887552 3345667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+.++..++.+.|++++|.+.|+++ ...|+...+..+...+...|+.++|.+.+++.+.+-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 778888888888888888888876 567888888888888888888888888888887653
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1.6e-11 Score=123.29 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=217.5
Q ss_pred CHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCC-ChhhHHHHHHHHHccccHHHHHHHH
Q 006457 238 HVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKC-NAVTLSAVLLAIAHLGVLRLGKCIH 313 (644)
Q Consensus 238 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~a~~~~~~~~~a~~i~ 313 (644)
+..+|...|...+.. .......+..+|...+++++|.++|+...+...... +..+|++.|-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 468899999887543 334556678899999999999999999974333322 456788877655322 222223
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006457 314 DQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390 (644)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (644)
.+-.-.--+..+.+|.++.+.|.-.++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223567889999999999999999999999998864 456888888888889999999999999875 4443
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 006457 391 -YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLL 466 (644)
Q Consensus 391 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 466 (644)
...|-.+...|.+.++++.|+-.|+.+ ..+.| +.....++...+-+.|+.|+|+++++++ ...| |+..---..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA---~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKA---VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhh---hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 346777888999999999999999998 45777 4677788889999999999999999987 3333 455545556
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..+...+++++|+..++++.++-|++...|.+++.+|-+.|+.+.|..-|.-+.+-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66778899999999999999999999999999999999999999999888777653
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.2e-08 Score=98.52 Aligned_cols=450 Identities=10% Similarity=0.036 Sum_probs=325.6
Q ss_pred HHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 006457 46 ADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELS 125 (644)
Q Consensus 46 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 125 (644)
.--...+++..|..+|+...... .-+...|..-+..=.+...+..|+.+++..+..=...| ..|-..+.+=-..|++.
T Consensus 81 qwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccH
Confidence 33345667788999999988744 23455566666666788889999999999987543333 34555566666779999
Q ss_pred HHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCch
Q 006457 126 DARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNG 205 (644)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~ 205 (644)
.|.++|+...+..|+..+|++.|.-=.+.+.++.|..+|++.. -+.|+..+|.--.+--.+.|...
T Consensus 159 gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV--------------~~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV--------------LVHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------------eecccHHHHHHHHHHHHhcCcHH
Confidence 9999999987777999999999999999999999999999976 45699999998888888999999
Q ss_pred HHHHHHHHHHHh-CC-CCCccHHHHHHHHHHhcCCHHHHHHHHhcC----CCC-CHhHHHHHHHHHHHCCCh---hHHHH
Q 006457 206 VTEGAHGFVIKR-GF-DSEVGVGNTLIDAYARGGHVDVSRKVFDGM----IEK-DAVTWNSIIAIYAQNGLA---AEALD 275 (644)
Q Consensus 206 ~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-~~~~~~~li~~~~~~g~~---~~A~~ 275 (644)
.++++++.++.. |- ..+...+.+....=.++..++.|.-+|.-. +.. ....|......=-+-|+. ++++-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988764 21 112334555555556677888888887654 332 233444444433444553 33332
Q ss_pred -----HHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCc-h-hHHHHHHHH--------HHhcCC
Q 006457 276 -----VFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEES-V-IVGTSIIDM--------YCKCGQ 340 (644)
Q Consensus 276 -----~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~-~-~~~~~li~~--------~~~~g~ 340 (644)
-|+.++ ..-+-|-.++--.+......|+.+..+++++.++..- +|- . ..|.-.|-. -....+
T Consensus 305 ~KRk~qYE~~v--~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 305 GKRKFQYEKEV--SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhhHHHHHH--HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233444 2234466677777777788899999999999998743 442 1 112222111 134678
Q ss_pred HHHHHHHHHhcCC--C-ChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006457 341 VDLARKAFNQMKE--K-NVRSWTAM----IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHW 413 (644)
Q Consensus 341 ~~~A~~~~~~~~~--~-~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 413 (644)
++.+.++|+...+ | .-.|+.-+ ..--.++.+...|.+++...+ |.-|-..+|...|..-.+.+.+|....+
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8999999987664 2 33344443 333456778899999988876 5789999999999999999999999999
Q ss_pred HHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 414 LNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 414 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
++.... ..| +..+|......=...|+.+.|..+|+-+-.+| ....|.+.|..-...|.++.|..+++++++.
T Consensus 460 YEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 460 YEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999854 445 57788888888889999999999999774444 3568888888888999999999999999998
Q ss_pred CCCCchhHHHHHHHHh-----hcC-----------CchHHHHHHHHHh
Q 006457 489 EPNNCGYHVLLSNIYA-----NAG-----------RWEDVERTRSLMK 520 (644)
Q Consensus 489 ~p~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 520 (644)
.+... .+...+..-. +.| ....|.++|+...
T Consensus 537 t~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 537 TQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 88754 6777666443 333 4556777776653
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=5.7e-10 Score=114.71 Aligned_cols=282 Identities=11% Similarity=-0.024 Sum_probs=158.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccH-HHHHHHHHHhcCCHHHHHHHHhcCCC--CC--HhHHHHHHHHHHHCCChhHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGV-GNTLIDAYARGGHVDVSRKVFDGMIE--KD--AVTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~ 274 (644)
..|+++.|++......+. .|++.. +-....++.+.|+.+.|.+.|.+..+ |+ ....-.....+...|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457788888877665554 333322 33345667777888888888877522 22 223333466677788888888
Q ss_pred HHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------HhcCCHHHHHHH
Q 006457 275 DVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMY-------CKCGQVDLARKA 347 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~ 347 (644)
+.++.+. ... +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ ......+...+.
T Consensus 174 ~~l~~l~-~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLL-EMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHH-HhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888886 222 3344566677777788888888888888887776443322211111111 112223344444
Q ss_pred HHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhhc
Q 006457 348 FNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF---VSVLSACSHAGLVQEGWHWLNTMGHEF 421 (644)
Q Consensus 348 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (644)
++..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 544443 36666777777777777777777777777764 3333311 111111223355566666665554422
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 422 NIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG---MKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122114445566666666666666666662 23455655555666666666666666666665543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=5.3e-10 Score=114.94 Aligned_cols=282 Identities=11% Similarity=0.006 Sum_probs=205.1
Q ss_pred HhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh-hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCc--cHHHH
Q 006457 152 VQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSV-AIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEV--GVGNT 228 (644)
Q Consensus 152 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~ 228 (644)
...|+++.|.+.+.+.. ...|++. .+.....+....|+.+.+.+.+..+.+.. |+. .+.-.
T Consensus 95 ~~~g~~~~A~~~l~~~~--------------~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~ 158 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNA--------------DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIA 158 (409)
T ss_pred HhCCCHHHHHHHHHHHh--------------hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHH
Confidence 45799999999998754 3345533 34444566778899999999999987653 444 34455
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHH---Hc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI---AH 302 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~---~~ 302 (644)
....+...|+++.|...++.+.+ .+...+..+...|.+.|++++|.+++.... +.++.+..........+. ..
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999843 367788899999999999999999999998 555433222211111221 22
Q ss_pred cccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhh---HHHHHHHHHhcCCHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDL---EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNVRS---WTAMIAGYGMHCRARE 374 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~ 374 (644)
.+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+ ||... +..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 2223333345555544331 24788888999999999999999999998875 43331 1222233344578889
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 375 ALDLFYKMIKAGVRPNY---ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
+++.+++..+. .|+. ....++...|.+.|++++|.++|+.... ....|+...+..+...+.+.|+.++|.++++
T Consensus 318 ~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 318 LEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999888874 4544 4566888899999999999999995322 4678999999999999999999999999998
Q ss_pred hC
Q 006457 452 GM 453 (644)
Q Consensus 452 ~~ 453 (644)
+.
T Consensus 395 ~~ 396 (409)
T TIGR00540 395 DS 396 (409)
T ss_pred HH
Confidence 64
No 49
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.7e-09 Score=98.09 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=256.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCC-ChhHHHHHHHHhHhhhhc------------
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQND-NAREALLLFKEFLLEESE------------ 173 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~------------ 173 (644)
+...-...+..|...++.+.|.....+++.. ....--|.|+.-+.+.| +..++.--+.+.....+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t-~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT-LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc-ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh
Confidence 3444555677888888888898888888763 23333444444333332 222222222222211111
Q ss_pred -----cCCCCCCCCCccCCHhhHHHHHHHhhc--CCCchHHHHHHHHHHHh-CCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 006457 174 -----CGGASENSDNVFVDSVAIASVLSACSR--VTVNGVTEGAHGFVIKR-GFDSEVGVGNTLIDAYARGGHVDVSRKV 245 (644)
Q Consensus 174 -----~~~~~~~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (644)
...-.+....+.|+..+...-+.+++. .++...+-+.+-.+... -++.|+....++.+.|...|+.++|+..
T Consensus 175 v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 175 VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 022223344455555566666665543 34444455555544443 4667788999999999999999999999
Q ss_pred HhcCCCCCHhHHHHH---HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 246 FDGMIEKDAVTWNSI---IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 246 ~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
|++...-|+.+...| .-.+.+.|+.++...+...+. . -..-+...|..-+...-...+++.|..+-+..++.. +
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf-~-~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~ 331 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF-A-KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-P 331 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH-h-hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-c
Confidence 998755554443332 233567888888888887776 2 111222233333333445677888888888887755 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMK--EK-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL- 398 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll- 398 (644)
.+...+-.-...+...|+.++|.-.|+... .| +..+|.-|+.+|...|++.+|.-+-+...+. ++.+..+++-+.
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 344445444566778899999999998654 33 7889999999999999999999888776654 344556655442
Q ss_pred HHHHc-cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 006457 399 SACSH-AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~ 475 (644)
..|.. ..--++|..++++. ..+.|+ ....+.+...+.+.|..+++..++++. ...||....+.|...++..+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 33332 23347888888876 456776 566778889999999999999999986 6789999999999999999999
Q ss_pred hHHHHHHHHhhccCCCCchh
Q 006457 476 DLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~ 495 (644)
.+|...|..++.++|++..+
T Consensus 488 Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHhcCccchHH
Confidence 99999999999999998443
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.6e-09 Score=103.14 Aligned_cols=260 Identities=11% Similarity=0.060 Sum_probs=204.9
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
+...-.-..-+...+++.+.++++....+.. ++....+..-|..+...|+..+-..+-..+++. .|....+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3334444556677899999999999987333 444445555556667777766665555666654 4667788888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006457 334 MYCKCGQVDLARKAFNQMKEKN---VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEG 410 (644)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 410 (644)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. ++-...-+..+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888999999999999876543 358999999999999999999999887764 222333344556678889999999
Q ss_pred HHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChhHHHH
Q 006457 411 WHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK--------VKA-DFVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
.++|... .++-| |+...+-+.-+....+.+.+|..+|+..- .++ -..+|+.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A---~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQA---LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHH---HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999988 46777 57777888777788899999999998761 111 23468888999999999999999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 481 AAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.+++++.+.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=2.8e-10 Score=107.96 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=163.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA 400 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (644)
....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788889999999999999987653 245678888889999999999999999998864 3456677788888
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
+...|++++|...++.+............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998653222334567778888999999999999999876 3334 456788888999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887764
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.1e-08 Score=96.67 Aligned_cols=252 Identities=12% Similarity=0.108 Sum_probs=168.0
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhc
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL--EESVIVGTSIIDMYCKC 338 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~ 338 (644)
..+|-.....++++.-..... ..|++-....-+....+.-...++++|+.+|+++.+... -.|..+|+.++ |.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 345555556666666666665 455554444444444444566677778888877777531 12455665554 3332
Q ss_pred CC--HH-HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 006457 339 GQ--VD-LARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 339 g~--~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.+ +. -|..++ .+.+--+.|.-++.+-|.-.++.++|...|++..+. .|. ...|+-+..-|....+...|.+-+
T Consensus 311 ~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 11 122222 122223344555566677777788888888888774 343 345666667777778888888888
Q ss_pred HHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 415 NTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 415 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+.++. +.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|++++...-.
T Consensus 388 RrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 388 RRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 87743 444 6677888888888888888888888876 4555 6678888888888888888888888888888766
Q ss_pred CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 492 NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+...+..|+++|-+.++.++|.+.+++-.+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 778888899999999999999888887664
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=1.4e-07 Score=94.62 Aligned_cols=493 Identities=11% Similarity=0.102 Sum_probs=291.3
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhcCCC-C---CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N---NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIK 81 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 81 (644)
+..|..-++.+.++|++..-+..|++.... | -...|...+.-..+.+-++-++.++++-.+. .| ..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence 456777788889999999999999874321 1 3356888888888889999999999998873 33 33566677
Q ss_pred HHhccCCcHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCC---hHHHHHHHhhCCCCCCC--eecHHHHHHH
Q 006457 82 SCSALHDLHSGKQAHQQAFIFG------FHRDVFVSSALIDMYSKCGE---LSDARKLFDEIPQRIRN--IVSWTSMLTG 150 (644)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~--~~~~~~li~~ 150 (644)
.++..+++++|.+.+...+... -+.+...|.-+.+..++.-+ --....+++.+....+| ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888899999988888776321 14455667777666665432 22344556666554344 4568999999
Q ss_pred HHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCC----------------------chHHH
Q 006457 151 YVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTV----------------------NGVTE 208 (644)
Q Consensus 151 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~----------------------~~~a~ 208 (644)
|.+.|.++.|-++|++-.+. .....-|..+..+|+.... ++...
T Consensus 258 YIr~g~~ekarDvyeeai~~--------------v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--------------VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--------------heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 99999999999999886521 1222334444444432211 11111
Q ss_pred HHHHHHHHhC-----------CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CC------CHhHHHHHHHHHHHCC
Q 006457 209 GAHGFVIKRG-----------FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EK------DAVTWNSIIAIYAQNG 268 (644)
Q Consensus 209 ~~~~~~~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~------~~~~~~~li~~~~~~g 268 (644)
.-++.+...+ -+.++..|..-+.. ..|+..+-...|.+.. +| -...|..+.+.|-.+|
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 2222222111 01111122221111 2344444444444431 11 2235777788888888
Q ss_pred ChhHHHHHHHHhHHcCCCCCC---hhhHHHHHHHHHccccHHHHHHHHHHHHHhC-----------CCC------chhHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCN---AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD-----------LEE------SVIVG 328 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----------~~~------~~~~~ 328 (644)
+.+.|..+|++.. .-..+-- ..+|......=.+..+++.|..+.+...-.. .++ +..+|
T Consensus 402 ~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 8888888888776 3222211 1223333333334456666766666554221 111 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIA---GYGMHCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACS-- 402 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~-- 402 (644)
...++.--..|-++....+++++.+--+.|=..+++ -+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 555666666777888888888877543333222222 2334556778888877655442234443 4555444332
Q ss_pred -ccCCHHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCh
Q 006457 403 -HAGLVQEGWHWLNTMGHEFNIEPGV--EHYGCMVDLLGRAGKLKEAYDLIEGMK--VKAD--FVVWGSLLGACRIHKNV 475 (644)
Q Consensus 403 -~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~ 475 (644)
....++.|..+|+.... |.+|.. ..|-.....=.+-|....|++++++.. +++. ...||..|.-....=-+
T Consensus 561 ygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred hcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 23468999999999866 666542 223333333345688888999999873 3332 34777777544333334
Q ss_pred hHHHHHHHHhhccCCCCchhH--HHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 476 DLGEIAAKKLFELEPNNCGYH--VLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..-..+|+++++.-|++-.-- .-.+.+-.+.|..+.|+.++..-.+
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 556788999999877754333 3356667889999999998876543
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=7.7e-12 Score=85.47 Aligned_cols=50 Identities=28% Similarity=0.537 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 354 KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=5.5e-12 Score=86.20 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhc
Q 006457 36 NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSA 85 (644)
Q Consensus 36 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 85 (644)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.8e-08 Score=97.39 Aligned_cols=476 Identities=12% Similarity=0.016 Sum_probs=294.5
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcCCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhc
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYVDK-NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSA 85 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 85 (644)
.-+..++.-+..+.++..|.-+-+++..- .|+..---+.+++.-.|+++.|..+...-.-. +.|..+.......+.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence 34555666666677777777766665321 14444445777888888888888877665432 3466777777778888
Q ss_pred cCCcHHHHHHHHHH----HHhC---------CCCChhH----HHHHH-------HHHHhCCChHHHHHHHhhCCCCCCCe
Q 006457 86 LHDLHSGKQAHQQA----FIFG---------FHRDVFV----SSALI-------DMYSKCGELSDARKLFDEIPQRIRNI 141 (644)
Q Consensus 86 ~~~~~~a~~~~~~~----~~~g---------~~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~~~~~~ 141 (644)
..++++|..++... .... +.+|..- -+.-. ..|......++|...|.+..- .|+
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--~D~ 172 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--ADA 172 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--cch
Confidence 88888888777622 1100 0011100 00001 112222334445444444333 333
Q ss_pred ecHHHHHHHHHhC-CChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCC
Q 006457 142 VSWTSMLTGYVQN-DNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFD 220 (644)
Q Consensus 142 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 220 (644)
..+..+...-... =-..+-..+|+.... ..-.+.+......+.........-+.....-....-.|..
T Consensus 173 ~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~-----------a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTAQEEFELLESLDL-----------AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA 241 (611)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHhcccH-----------HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh
Confidence 3333322111100 000111222221100 0001111111222211110000000000000000012334
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHH
Q 006457 221 SEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVL 297 (644)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 297 (644)
.++.+...-.+-+...+++.+..++++.+.+. ....+..-|.++...|+..+-+.+=.+++ ...+-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV--~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV--DLYPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCCcchhhHH
Confidence 45666666777788899999999999998654 44566677889999999999888888887 23455678899999
Q ss_pred HHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHH
Q 006457 298 LAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRARE 374 (644)
Q Consensus 298 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 374 (644)
--|...|+.++|++.+....... +.-...|-.+.+.|+-.|.-|.|...+....+ + .-..+--+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88889999999999999887644 22345678889999999999999887765432 1 11112223445777889999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-CCC----CChhHHHHHHHHHhhcCCHHHHHH
Q 006457 375 ALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEF-NIE----PGVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 375 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
|.+.|.+... +-| |+...+-+.-..-+.+.+.+|..+|+...... .+. ....+++.|..+|.+++.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999876 455 56666666655666889999999999875211 111 134568889999999999999999
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 449 LIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 449 ~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+++. . .+.|..++.++.-.+...|+++.|...|.+++.+.|++..+-.+|..+
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99986 2 334788999999999999999999999999999999997776666544
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=1.9e-08 Score=95.52 Aligned_cols=286 Identities=9% Similarity=0.013 Sum_probs=187.3
Q ss_pred CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 006457 154 NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAY 233 (644)
Q Consensus 154 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 233 (644)
.|++..|.++..+-. ..+-. ....|.....+.-+.|+.+.+.+....+.+..-.++..+.-+.....
T Consensus 97 eG~~~qAEkl~~rna------------e~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 97 EGDFQQAEKLLRRNA------------EHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred cCcHHHHHHHHHHhh------------hcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 588888888887743 22222 23445566667777788888888887777654455566666667777
Q ss_pred HhcCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 234 ARGGHVDVSRKVFDGM---IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 234 ~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
...|+++.|..-.+++ ..+++........+|.+.|++.....++..|. +.++--|+..-.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~---------------- 226 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAAR---------------- 226 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHH----------------
Confidence 7777777777666554 44567777777788888888888888888877 555443332110
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV 387 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (644)
+ ...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+.
T Consensus 227 -l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 227 -L-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred -H-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 0 012333444433333444444445555552 3455556667777788888888888888887777
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 006457 388 RPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLL 466 (644)
Q Consensus 388 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 466 (644)
.|+. ..+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.. +.+|+..+|+-+.
T Consensus 295 D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 295 DPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred ChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 6662 223345666777766666666655444444 66777888888888888888888754 6677788888888
Q ss_pred HHHHhcCChhHHHHHHHHhhc
Q 006457 467 GACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.++.+.|+.++|.+..++.+.
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 888888888888877777664
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=6.3e-07 Score=90.11 Aligned_cols=408 Identities=15% Similarity=0.185 Sum_probs=255.5
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCC------CCCCcccHHHHH
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLS------LTPTRSTFPCAI 80 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll 80 (644)
..|...+......+-++.+.+++.+...- ++..-+--|..++..+++++|-+.+....... .+.+...|..+-
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~-~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV-APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc-CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 56677777777888889999999988766 66668889999999999999999998876422 133444566666
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCC
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGF--HRD--VFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 156 (644)
...++..+.-....+ +.+++.|+ -+| ...|++|.+.|.+.|.+++|..+|++.......+.-++.+..+|++-..
T Consensus 218 dlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEE 296 (835)
T ss_pred HHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHH
Confidence 655555443332222 22333333 234 3589999999999999999999999876643345556666666665322
Q ss_pred hhHH----------------------HHHHHHhHhhhhccCCCCCCCCCccCC----------HhhHHHHHHHhhcCCCc
Q 006457 157 AREA----------------------LLLFKEFLLEESECGGASENSDNVFVD----------SVAIASVLSACSRVTVN 204 (644)
Q Consensus 157 ~~~A----------------------~~~~~~m~~~~~~~~~~~~~~~~~~p~----------~~t~~~ll~~~~~~~~~ 204 (644)
..-+ +.-|+.+.. ...+-.| ..++..-. -...|+.
T Consensus 297 ~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~-----------rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~ 363 (835)
T KOG2047|consen 297 SCVAAKMELADEESGNEEDDVDLELHMARFESLMN-----------RRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNA 363 (835)
T ss_pred HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh-----------ccchHHHHHHHhcCCccHHHHHhhh--hhhcCCh
Confidence 1111 111111110 0000000 11111111 1123445
Q ss_pred hHHHHHHHHHHHhCCCCC------ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HhHHHHHHHHHHHCCChh
Q 006457 205 GVTEGAHGFVIKRGFDSE------VGVGNTLIDAYARGGHVDVSRKVFDGMIEKD-------AVTWNSIIAIYAQNGLAA 271 (644)
Q Consensus 205 ~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~ 271 (644)
.+-...+..+++.- .|. ...|..+...|-..|+++.|..+|++...-+ ..+|-.....=.+..+++
T Consensus 364 ~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 364 AEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred HHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence 55556666666542 221 2467889999999999999999999985432 235655566666778899
Q ss_pred HHHHHHHHhHHcCCCCCC-----------------hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006457 272 EALDVFDQMVKSTDVKCN-----------------AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDM 334 (644)
Q Consensus 272 ~A~~~~~~m~~~~~~~p~-----------------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 334 (644)
.|+++.+... ...-.|. ...|+..+..--..|-++..+.+++.++...+.....+.| ..-.
T Consensus 443 ~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmf 520 (835)
T KOG2047|consen 443 AALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMF 520 (835)
T ss_pred HHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHH
Confidence 9999888775 2211111 1224444455556688899999999999877544333333 2223
Q ss_pred HHhcCCHHHHHHHHHhcCC----CCh-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--Hcc
Q 006457 335 YCKCGQVDLARKAFNQMKE----KNV-RSWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYITFVSVLSAC--SHA 404 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~ 404 (644)
+-...-++++.+++++-.. |++ ..|+.-+.-+.+ ....+.|..+|++.++ |.+|...-+..|+.|- ...
T Consensus 521 LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHh
Confidence 3455668999999987653 555 368877665544 2368999999999998 7888765444444332 345
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVD 435 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~ 435 (644)
|....|..+++++.. ++++. ...|+..|.
T Consensus 600 GLar~amsiyerat~--~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 600 GLARHAMSIYERATS--AVKEAQRLDMYNIYIK 630 (835)
T ss_pred hHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 888888888888744 44443 344555443
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=5.9e-09 Score=95.94 Aligned_cols=305 Identities=15% Similarity=0.155 Sum_probs=136.0
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCH------hHHHHHHHHHHHCCChhHHH
Q 006457 202 TVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE-KDA------VTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 202 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~A~ 274 (644)
.+.++|..+|-.|.+.. +.+..+.-+|.+.|.+.|.+|.|+++.+.+.+ ||. .+.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44555555555555421 22333444555556666666666665555532 221 12233444455555556666
Q ss_pred HHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHh
Q 006457 275 DVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESV----IVGTSIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 350 (644)
.+|..+. ..+ ..-......++..|-...++++|..+-+++.+.+-.+.. ..|.-|...+....+++.
T Consensus 128 ~~f~~L~-de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~------- 198 (389)
T COG2956 128 DIFNQLV-DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR------- 198 (389)
T ss_pred HHHHHHh-cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH-------
Confidence 5555554 211 112233444555555555555555555555554432221 122333333333444444
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 351 MKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
|..++.+..+.+ |+.+ .-..+.......|+++.|.+.++.+.+. +..--..+
T Consensus 199 ------------------------A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ev 251 (389)
T COG2956 199 ------------------------ARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEV 251 (389)
T ss_pred ------------------------HHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHH
Confidence 444444444421 2211 1112223344444444444444444331 22222334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH--hhc
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY--ANA 506 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~ 506 (644)
...|..+|...|+.++...++.++ ...++...-..+-..-....-.+.|...+.+-+...|+-...|-.+---. +.-
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 444444445555555544444433 22222222222222222222233444444444444454322222222111 234
Q ss_pred CCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEE
Q 006457 507 GRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFL 543 (644)
Q Consensus 507 g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~ 543 (644)
|++.+-.-+++.|....++..|.+.....+-..|.|.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 5577777788888877777777665555554555553
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=4.2e-09 Score=107.22 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=174.1
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKM-----DL-EESV-IVGTSIIDMYCKCGQVDLARKAFNQMKE-------K- 354 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 354 (644)
..|...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888889999999999888887764 21 1222 2334577788999999999988887753 1
Q ss_pred C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcC--
Q 006457 355 N---VRSWTAMIAGYGMHCRAREALDLFYKMIK-----AGVR-PNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFN-- 422 (644)
Q Consensus 355 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 422 (644)
+ ..+++.|..+|.+.|++++|...+++..+ .|.. |... -++.+...|...+.+++|..+++...+-+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 35788888899999999998888877653 2222 2222 466677788999999999999987765433
Q ss_pred CCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 423 IEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 423 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
..++ ..+++.|...|-..|++++|.++++++ +..+. ...++.|..+|.+.++.++|..+|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467999999999999999999999876 11222 446778889999999999999998887653
Q ss_pred ----C---CCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 489 ----E---PNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 489 ----~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
. |+...+|..|+.+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 4455678899999999999999999998876
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.1e-08 Score=95.37 Aligned_cols=413 Identities=13% Similarity=0.019 Sum_probs=262.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSLTPT-RSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRD-VFVSSALIDMY 118 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 118 (644)
+-...+-|.++|++++|++.|.+... ..|| +..|...-.+|...|+++...+--...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 44556678899999999999999988 5688 666777777788899998888777766654 454 34555566777
Q ss_pred HhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHh
Q 006457 119 SKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSAC 198 (644)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~ 198 (644)
-..|++++|+.= +|-.++..++..+.-.--+.+++++.-....... -..+...+.|......+.+..+
T Consensus 194 E~lg~~~eal~D-----------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~-~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 194 EQLGKFDEALFD-----------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEK-LKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HhhccHHHHHHh-----------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHh-hcccCCCCCCcHHHHHHHHhhc
Confidence 777887776521 1222333333322222222222222110000000 0011445666666555555544
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHH----HHhc-CCHHHHHHHHhcC-------CCCC---------HhHH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDA----YARG-GHVDVSRKVFDGM-------IEKD---------AVTW 257 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~-g~~~~A~~~~~~~-------~~~~---------~~~~ 257 (644)
-..- ......+.......+..+ |... ..+..|...+.+- ...+ ..+.
T Consensus 262 ~~~~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 262 HADP------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred cccc------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 2210 000001111111111111 1111 1233333333221 1111 1222
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
.....-+.-.|+.-.|.+.|+... ...-.++ ..|-.+..+|....+.++....|....+.+ +.+..+|..-..++.-
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I-~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAI-KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFL 406 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHH-hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHH
Confidence 222333455788889999999887 3322222 227777788899999999999999998876 4566777777888888
Q ss_pred cCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.+++++|..=|++...- ++..|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 89999999999987753 5667777777778888999999999999876 5666778888889999999999999999
Q ss_pred HHHhhhcCCCCC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 415 NTMGHEFNIEPG---------VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 415 ~~~~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
+..+. +.|+ +.+..+++..-. .+++..|.+++++. .+.| -...+.+|...-.+.|+.++|+++|+
T Consensus 486 D~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 486 DKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 98853 3443 223333333333 38999999999987 4555 35588899999999999999999999
Q ss_pred HhhccC
Q 006457 484 KLFELE 489 (644)
Q Consensus 484 ~~~~~~ 489 (644)
+...+-
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 987653
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.21 E-value=4.4e-08 Score=101.70 Aligned_cols=448 Identities=12% Similarity=0.042 Sum_probs=219.3
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK--N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCA 79 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 79 (644)
.||-.+|.+++.-|+..|+.+.|- +|.-|.-+ | +...++.++.+..+.++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 366799999999999999999998 77666432 3 3445777777766666655544 5666777777
Q ss_pred HHHHhccCCcHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhCCChHHHHHHHhhCC
Q 006457 80 IKSCSALHDLHS---GKQAHQQAF----IFGF-----------------HRDVFVSSALIDMYSKCGELSDARKLFDEIP 135 (644)
Q Consensus 80 l~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 135 (644)
+.+|...||+.. .++.+..+. ..|+ -||.. ..+......|-++.+.+++..++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 777777776543 222121111 1121 11111 12222223344444444443333
Q ss_pred CC--------------------------------CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCC
Q 006457 136 QR--------------------------------IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDN 183 (644)
Q Consensus 136 ~~--------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 183 (644)
.. .++..+|...+..-..+|+.+.|..++.+|. ..|
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk------------e~g 234 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK------------EKG 234 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH------------HcC
Confidence 22 2555566666666666666666666666666 666
Q ss_pred ccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHH
Q 006457 184 VFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAI 263 (644)
Q Consensus 184 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 263 (644)
++.+..-|..++-+ .++......+..-|...|+.|+..|+...+-.+.++|....+....+.-.--....+..+..+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 66666655555544 555566666666666666666666666555555544432221111100000001111122111
Q ss_pred HHHCCChhH-----HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC--C-CCchhHHHHHHHHH
Q 006457 264 YAQNGLAAE-----ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--L-EESVIVGTSIIDMY 335 (644)
Q Consensus 264 ~~~~g~~~~-----A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~-~~~~~~~~~li~~~ 335 (644)
...+.+.+. ....+++.. -.|+.-....|..... ....|.-+...++-..+..-- . ..++..+..++.-|
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~f-Llg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy 389 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLF-LLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY 389 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHH-HhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence 111111110 011111111 1121111111111111 111333333333333332110 0 01112222222222
Q ss_pred Hh----------------------cCCHHHHHHHHHhcCCCC-----------------hhh-----------HHHHHHH
Q 006457 336 CK----------------------CGQVDLARKAFNQMKEKN-----------------VRS-----------WTAMIAG 365 (644)
Q Consensus 336 ~~----------------------~g~~~~A~~~~~~~~~~~-----------------~~~-----------~~~li~~ 365 (644)
.+ .....+..+...... || ... -+.++..
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lr-kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLR-KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhC-cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 11 111122222222111 11 111 2333444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh-hcCCCCChhHHHHHHHHHhhcCCHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGH-EFNIEPGVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~ 444 (644)
+++.-+..+++..-++....-+ | -.|..++.-|.....++.|..+.++... +..+..|...+..+.+.+.|.+.+.
T Consensus 469 l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 4444444444433222222111 1 4577888888888999999988887732 1234456677889999999999999
Q ss_pred HHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 445 EAYDLIEGMK----VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 445 ~A~~~~~~~~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
++..++.+++ .+|+ ..+.--+++..+..|+.+.-.+.++-+.
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 9999999884 3443 2344556666677777666655555443
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=3.5e-08 Score=93.80 Aligned_cols=274 Identities=11% Similarity=0.074 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHH
Q 006457 236 GGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCI 312 (644)
Q Consensus 236 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i 312 (644)
.|++..|++...+-.+ .....|..-+.+--+.|+.+.+-..+.+.. +..-.++.....+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 6788888888776533 234455555566677788888888888876 332244444555556667777888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 313 HDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNV-----------RSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
...+.+.+ +-++.+.......|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88877766 45566777888888888888888888888876432 3677777766666666666667776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH----HHHhCCCCC
Q 006457 382 MIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYD----LIEGMKVKA 457 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~p 457 (644)
.... .+-++..-.+++.-+.+.|+.++|.++.....+. +..|+.. .++ ...+-++.+.=++ -+...+..|
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6544 4556667777888889999999999998888664 6666622 122 2334444443333 334445444
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
..+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.+.|+..+|.+++++..
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 78899999999999999999999999999997 4889999999999999999999998765
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=3.7e-08 Score=90.77 Aligned_cols=192 Identities=13% Similarity=0.147 Sum_probs=131.2
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCCC-C--ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHH
Q 006457 192 ASVLSACSRVTVNGVTEGAHGFVIKRGFDS-E--VGVGNTLIDAYARGGHVDVSRKVFDGMIEKD---AVTWNSIIAIYA 265 (644)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~ 265 (644)
.++-+.+.+.|..+.|.++|..+.++.--+ + ....-.|..-|...|-+|.|+.+|..+.+.+ ..+...|+..|-
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ 152 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 345566888999999999999988753111 1 2344567778999999999999999997743 446777899999
Q ss_pred HCCChhHHHHHHHHhHHcCCCCCChh----hHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006457 266 QNGLAAEALDVFDQMVKSTDVKCNAV----TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV 341 (644)
Q Consensus 266 ~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 341 (644)
...+|++|++.-+++. ..+-.+..+ .|.-+........+++.|...+....+.+ +..+..--.+.+.+...|++
T Consensus 153 ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 153 ATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccch
Confidence 9999999999999887 444444332 34444455555677888888888887755 33344444556666666677
Q ss_pred HHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 342 DLARKAFNQMKEKNVR----SWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 342 ~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
+.|.+.++.+.+.|.. +...|..+|.+.|+.++.+..+.++.+.
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7666666666654432 3445555666666666666666665553
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=1.9e-08 Score=107.50 Aligned_cols=260 Identities=12% Similarity=-0.015 Sum_probs=182.6
Q ss_pred CHhHHHHHHHHHHH-----CCChhHHHHHHHHhHHcCCCCCCh-hhHHHHHHHHH---------ccccHHHHHHHHHHHH
Q 006457 253 DAVTWNSIIAIYAQ-----NGLAAEALDVFDQMVKSTDVKCNA-VTLSAVLLAIA---------HLGVLRLGKCIHDQVI 317 (644)
Q Consensus 253 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~ 317 (644)
+...|...+.+-.. .+..++|++.|++.. ...|+. ..+..+..++. ..+++++|...+++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al---~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV---NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 45555555555322 133578999999987 345543 34444443332 2345789999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI-T 393 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 393 (644)
+.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 875 45677788888889999999999999998764 4 4567888899999999999999999999985 45432 3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFV-VWGSLLGACR 470 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~ 470 (644)
+..++..+...|++++|...++++... ..| +...+..+...|...|++++|.+.++++ +..|+.. .++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999988552 234 4556777888999999999999999887 3445433 4455556666
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..| +.|...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4788878877764322222223366678888888887776 7776654
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.4e-08 Score=92.84 Aligned_cols=372 Identities=14% Similarity=0.130 Sum_probs=174.0
Q ss_pred HHHHHhcCCchHHHHHHhhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccC
Q 006457 13 VSNVDKHSTNTNLTTLFNKYVDK-----NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALH 87 (644)
Q Consensus 13 ~~~~~~~~~~~~A~~~f~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 87 (644)
+.-+....++..|+.+++--... .++..| +...+.+.|++++|+..+.-+.+.. .|+...+..|.-+..-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 44566778889998888653321 022223 3445678899999999998887754 455555555555555567
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHH
Q 006457 88 DLHSGKQAHQQAFIFGFHRDVFVS-SALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKE 166 (644)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 166 (644)
.+.+|+++-... |+.... ..|...-.+.|+-++-..+-+.+... ..---+|.+...-.-.+.+|++++++
T Consensus 106 ~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 QYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 777777665432 333333 33444445566655555554444431 11111222222223345677777777
Q ss_pred hHhhhhccCCCCCCCCCccCCHhhHHHHHHH-hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh--cCCH----
Q 006457 167 FLLEESECGGASENSDNVFVDSVAIASVLSA-CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR--GGHV---- 239 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~---- 239 (644)
.+. -.|+-...+.-+.. +.+..-++.+.+++.-..+. ++.++...|.......+ .|+.
T Consensus 177 vL~--------------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 177 VLQ--------------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHh--------------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 651 12344444444443 34445555555555554443 22223333333322222 1221
Q ss_pred -----------------------------HHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh
Q 006457 240 -----------------------------DVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA 290 (644)
Q Consensus 240 -----------------------------~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 290 (644)
+.|++++-.+...-+.+--.|+--|.+.+++.+|..+.+++. ...|-.
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~E 318 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYE 318 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHH
Confidence 222222222211112222334445677777777777776664 344444
Q ss_pred hhHHHHHHHH-----HccccHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHH
Q 006457 291 VTLSAVLLAI-----AHLGVLRLGKCIHDQVIKMDLEESVIVG-TSIIDMYCKCGQVDLARKAFNQMKE----KNVRSWT 360 (644)
Q Consensus 291 ~t~~~ll~a~-----~~~~~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 360 (644)
.....+..+- .....+.-|.+.|...-.++..-|+... .++...+.-..+++++...++.+.. .|...+
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~- 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL- 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-
Confidence 4333333222 1112234444555444444433332221 1233333334445555544444432 122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHH
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVS-VLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~ 416 (644)
.+.++++..|++.+|.++|-+.....++ |..+|.+ |.++|.+.+.++.|+.++-.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 2344555555555555555444322222 2333333 22344455555555444433
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=6.3e-07 Score=92.23 Aligned_cols=454 Identities=14% Similarity=0.088 Sum_probs=272.6
Q ss_pred HHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh---ccCC-------------------cHHHHHHH----HHHHH
Q 006457 48 LARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS---ALHD-------------------LHSGKQAH----QQAFI 101 (644)
Q Consensus 48 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~-------------------~~~a~~~~----~~~~~ 101 (644)
+...++.++++.-+......+...+..++..+...+. ..++ ++++.... .++..
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 3445666777777766666555555555555443322 1222 22322221 12222
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCC
Q 006457 102 FGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASEN 180 (644)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 180 (644)
..+.-|..+|..|.-+..++|+++.+.+.|++.... ......|+.+-..|.-.|.-..|+.+++.-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~------------ 384 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL------------ 384 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc------------
Confidence 235568889999999999999999999999987643 3355679999999999999999999998854
Q ss_pred CCCccCC-HhhHHHHHHHhh-cCCCchHHHHHHHHHHHh--CC--CCCccHHHHHHHHHHhcC-----------CHHHHH
Q 006457 181 SDNVFVD-SVAIASVLSACS-RVTVNGVTEGAHGFVIKR--GF--DSEVGVGNTLIDAYARGG-----------HVDVSR 243 (644)
Q Consensus 181 ~~~~~p~-~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~ 243 (644)
...-.|+ ...+..+-+.|. +.+..+++...-..++.. +. ...+..+-.+.-+|...- ...++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 2222243 333333344444 345566666555555541 11 122334444444444321 124455
Q ss_pred HHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHH-h
Q 006457 244 KVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIK-M 319 (644)
Q Consensus 244 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~ 319 (644)
+.+++..+ .|+.+---+.--|+..++.+.|++..++.. ..+-.-+...+..+.-.+...+++..|..+.+.... .
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL-~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREAL-ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 55655522 133222223344667778888888888877 444445666666666667777888888888776654 2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------------------CCh-hhHHHHHHHHH
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-------------------------------KNV-RSWTAMIAGYG 367 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~ 367 (644)
|.. -.....-++.-..-++.++|......+.. .+. .++..+..-..
T Consensus 544 ~~N--~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 GDN--HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred hhh--hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 211 11111111111223344443322221110 011 11221111111
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHh
Q 006457 368 MHCRAREALDLFYKMIKAGVR--PN------YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLG 438 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~--p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 438 (644)
.. .+.+..-.. |...-+. |+ ...|......+...+..++|...+.+.. ++.| ....|.-....+.
T Consensus 622 ~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 622 SQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLE 695 (799)
T ss_pred hh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHH
Confidence 00 000000000 1111122 22 1234455667888899999998888773 3444 5777887888899
Q ss_pred hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHH--HHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 439 RAGKLKEAYDLIEGM-KVKADF-VVWGSLLGACRIHKNVDLGEI--AAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 439 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
..|.+++|.+.|... -+.|+. .+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++-+.|+.++|.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999988765 567754 478888899999999888888 9999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 006457 515 TRSLMKNR 522 (644)
Q Consensus 515 ~~~~m~~~ 522 (644)
.|+...+-
T Consensus 776 cf~aa~qL 783 (799)
T KOG4162|consen 776 CFQAALQL 783 (799)
T ss_pred HHHHHHhh
Confidence 99987643
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=3e-08 Score=93.92 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=95.7
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
...+..+...|...|++++|.+.+++.. .. .+.+...+..+...+...|+++.|...+....+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKAL-EH-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4556677777777777777777777775 22 12234455555556666666666666666665543 223344445555
Q ss_pred HHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006457 334 MYCKCGQVDLARKAFNQMKEK-----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQ 408 (644)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 408 (644)
.|...|++++|.+.|++.... ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 555555555555555554321 12234444444455555555555555544421 112333444444444445555
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 409 EGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+|..+++..... .+.+...+..++..+...|+.++|..+.
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555444444331 1222333333444444444444444443
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=2.2e-08 Score=102.11 Aligned_cols=233 Identities=15% Similarity=0.131 Sum_probs=144.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCCC----------CHh-HHHHHHHHHHHCCChhHHHHHHHHhHHc--CCCCCCh
Q 006457 224 GVGNTLIDAYARGGHVDVSRKVFDGMIEK----------DAV-TWNSIIAIYAQNGLAAEALDVFDQMVKS--TDVKCNA 290 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~p~~ 290 (644)
.+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++... ...-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~- 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED- 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-
Confidence 34555777777777777777777654221 111 1223444556666666666666655410 000011
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-hH
Q 006457 291 VTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE----------KNVR-SW 359 (644)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~ 359 (644)
.+.-..+++.|..+|.+.|++++|...+++..+ +.+. -+
T Consensus 279 ------------------------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 279 ------------------------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred ------------------------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 111123444555566666666666555544321 1222 35
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CC--CC-C
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKA---GVRPNY----ITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NI--EP-G 426 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~--~p-~ 426 (644)
+.++..+...+++++|..++++..+. -+.++. -+++.+...+-+.|++++|.++|++++... +- .+ .
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 55666777778888888887765531 122332 478888888888999999988888876432 11 22 2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM--------KVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
...++.|...|.+.+++++|.++|.+. +..|+. .+|..|...|...|+++.|+++.+++..
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456777888888888888888888765 234444 4889999999999999999999888864
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=2.5e-08 Score=106.70 Aligned_cols=212 Identities=13% Similarity=-0.007 Sum_probs=163.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCC
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK---------CGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 371 (644)
+++++|...+++.++.. +.+...+..+..+|.. .+++++|...+++..+ | +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45789999999998764 3344556556555442 3458899999998775 3 56788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHH
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+++|+..|++..+.+ +.+...+..+..++...|++++|...++.+.+ +.|+. ..+..++..+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999853 33456778888899999999999999999954 45653 23334455577789999999999
Q ss_pred HhCC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 451 EGMK--VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 451 ~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.- ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8762 2354 4456677788889999999999999998888988888888888888888 5888888877653
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.3e-06 Score=83.06 Aligned_cols=435 Identities=11% Similarity=0.146 Sum_probs=257.5
Q ss_pred HHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH--HHHHH--H
Q 006457 44 VIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSA--LIDMY--S 119 (644)
Q Consensus 44 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~ 119 (644)
=++-+.++|++++|.....++...+ +-|...+..=+-+....+.+++|..+.+ ..+. ..+++. +=.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHH
Confidence 3455678899999999999999865 3344556666667778888888874433 2221 112222 23334 4
Q ss_pred hCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccC-CHhhHHHHHHHh
Q 006457 120 KCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFV-DSVAIASVLSAC 198 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~ 198 (644)
+.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+. ..+..- |..--..++.+.
T Consensus 91 rlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~------------kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLA------------KNNSDDQDEERRANLLAVA 156 (652)
T ss_pred HcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHH------------hcCCchHHHHHHHHHHHHH
Confidence 77999999999985544 454466666678889999999999999986 333222 222222233222
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHH---HHHHHHHhcCCHHHHHHHHhcC--------CCCCH-----h-----HH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGN---TLIDAYARGGHVDVSRKVFDGM--------IEKDA-----V-----TW 257 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~ 257 (644)
... .+. .+......| ..+|. .....+...|++.+|+++++.. .+.|. . .-
T Consensus 157 a~l----~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 157 AAL----QVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred Hhh----hHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 111 010 121222222 22333 3345677899999999999877 22211 1 12
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHH---HHHHccccHHH--------------HHHHHHHHHHhC
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVL---LAIAHLGVLRL--------------GKCIHDQVIKMD 320 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll---~a~~~~~~~~~--------------a~~i~~~~~~~~ 320 (644)
-.|.-.+...|+..+|.++|.... .. ..+|........ .+...-.++-. +......+.. .
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i-~~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~ 304 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDII-KR-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-K 304 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH-Hh-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-H
Confidence 234556778999999999999987 33 345543222221 22221111111 1111111111 0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 006457 321 LEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN-VRSWTAMIAGYGM--HCRAREALDLFYKMIKAGVRPNY--ITFV 395 (644)
Q Consensus 321 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 395 (644)
-......-+.++.+|. +..+.+.++-...+..- ...+.+++....+ .....+|.+++...-+. .|+. ....
T Consensus 305 qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L 380 (652)
T KOG2376|consen 305 QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHH
Confidence 0112223345555553 45667777777766432 3344444443322 22467788888777654 3433 3444
Q ss_pred HHHHHHHccCCHHHHHHHHH--------HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-
Q 006457 396 SVLSACSHAGLVQEGWHWLN--------TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--------KVKAD- 458 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~- 458 (644)
..+.-....|+++.|.+++. .+ .+.+. .+.+..+++.+|.+.++-+-|.+++.+. ...+.
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~-~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSI-LEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhh-hhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 55556678999999999998 44 22233 3455667888888888876666666544 22222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
..+|.-+...-.++|+.++|...++++++.+|++......+..+|+.. +.+.|..+-+.+
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 223444444556889999999999999999999999999999998876 456666654443
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.5e-06 Score=79.80 Aligned_cols=191 Identities=13% Similarity=0.059 Sum_probs=122.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCR-------AREALDLFYKMIKAGVRPNYI-TFVSVLSAC 401 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 401 (644)
.|+--|.+.+++.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+..-|.+ ---++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 355568899999999999888764443333222222333332 333444444433333332222 122334444
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHH-HHHHhcCChhHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLL-GACRIHKNVDLG 478 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll-~~~~~~g~~~~a 478 (644)
.-.-++++.+-+++.+.. +=...|...+| +..++...|++.+|+++|-++. .-.|..+|.+++ .+|.+.+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 455678888888888843 44444555554 7889999999999999998773 113677887777 555788888888
Q ss_pred HHHHHHhhccCCCC-chhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 479 EIAAKKLFELEPNN-CGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 479 ~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
..++-+.- .|.+ .+....+++-|.+++.+--|.+.|+.+.....
T Consensus 448 W~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 448 WDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 77754432 2332 34455678889999999999999999886554
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=8.7e-09 Score=94.77 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=174.0
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
+.|.++|.+.|.+.+|.+.|+... . -.|-..||..+-.+|.+..++..|..++.+-++. ++.++....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL-~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL-T--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh-h--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 678889999999999999888876 2 3556667888888888888888888888887764 24555555566777778
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.++.++|.++++...+ .|+.+.-++..+|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...+.+|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888888765 25556666667788888889999999998888854 6677888888888888888887777
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 415 NTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
++.... .-+.++| ..+|-.+.......||+..|.+.|+.++.-+|++..
T Consensus 382 ~RAlst-------------------at~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALST-------------------ATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHhh-------------------ccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 766331 1112222 234555555556678888888888888888888888
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 495 YHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.++.|+-.-.+.|++++|+.++.......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 89999888888999999999888877654
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=3.2e-08 Score=96.83 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSH 403 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 403 (644)
+..+...|...|+.++|...|++..+ .+...|+.+...|...|++++|++.|++..+. .|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444455555555555555555432 23445555555666666666666666665552 332 3445555555555
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
.|++++|.+.|+...+ ..|+..........+...+++++|.+.|++. . ..|+ .|.. .......|+...+ ..
T Consensus 145 ~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~-~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW-NIVEFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH-HHHHHHccCCCHH-HH
Confidence 5666666666655533 2333221111112233445566666665432 1 1222 2221 1111223333322 12
Q ss_pred HHHhh-------ccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 482 AKKLF-------ELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 482 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.+. ++.|+.+..|..++.+|...|++++|...+++..+.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22222 233444556666666666666666666666666543
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.7e-06 Score=91.21 Aligned_cols=482 Identities=11% Similarity=0.135 Sum_probs=270.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHH-----HHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 9 VSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVI-----ADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
+..+.+.|.+.|-...|++.+..+..---++..+.+| -.|.-.-.++++++.+..|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6678889999999999999888775310111222221 23334446889999999999888877776665555555
Q ss_pred hccCCcHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCC----------------
Q 006457 84 SALHDLHSGKQAHQQAFIF-----------GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQ---------------- 136 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------- 136 (644)
...-..+...++|+..... ++.-|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5443344445555544321 3456677777788889999999888887654211
Q ss_pred -CCC-----CeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHH-------------HHHHH
Q 006457 137 -RIR-----NIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIA-------------SVLSA 197 (644)
Q Consensus 137 -~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~-------------~ll~~ 197 (644)
..| |..-+-.=+-.|.-.++..+-+++|-+-... ...+........+.-+....- -+..-
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp-s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP-SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC-cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 011 1111111111222223333333333221100 000000000001111111111 12223
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHH-------------------------------------
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVD------------------------------------- 240 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~------------------------------------- 240 (644)
+.+.+.+......++..+..| ..|+.++|+|...|...++-.
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 344455555556666666677 457788888877665433211
Q ss_pred ---------------HHHHHHhcC-----------------------------CCCCHhHHHHHHHHHHHCCChhHHHHH
Q 006457 241 ---------------VSRKVFDGM-----------------------------IEKDAVTWNSIIAIYAQNGLAAEALDV 276 (644)
Q Consensus 241 ---------------~A~~~~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~ 276 (644)
.|+-+.+++ ...|+..-+.-+.++..++-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 111111111 001333344455666666777777777
Q ss_pred HHHhHHcCC-CCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC-----------------------CCCchhHHHHHH
Q 006457 277 FDQMVKSTD-VKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD-----------------------LEESVIVGTSII 332 (644)
Q Consensus 277 ~~~m~~~~~-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----------------------~~~~~~~~~~li 332 (644)
++++. ..+ .-........++-.-+-..+.....++.+++-... +..+....+.||
T Consensus 1007 LEKIv-L~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1007 LEKIV-LDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLI 1085 (1666)
T ss_pred HHHHh-cCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 77665 221 11111111111111111112222222222221111 111222222222
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
+ .-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|+..|..++..+++.|.+++-..
T Consensus 1086 e---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred H---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 2 12334444444333332 356999999999999999999887543 367789999999999999999999
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 413 WLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
++....++ .-+|.++ +.||-+|++.+++.+-++++. -||..-......-|...|.++.|.-+|..
T Consensus 1155 yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------- 1219 (1666)
T KOG0985|consen 1155 YLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN-------- 1219 (1666)
T ss_pred HHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------
Confidence 99888553 5566655 578999999999999888774 36777788889999999999999888874
Q ss_pred chhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 493 CGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
.+.|..|+..+...|.+..|...-++.
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467888888888888888887654443
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.7e-08 Score=92.84 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=155.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMK--EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF-VSVLSACSHA 404 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~ 404 (644)
-+-+...|.+.|.+.+|.+.|+.-. .|-+.||-.|-.+|.+..+++.|+.+|.+-.+. -|-.+|| ....+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3567788899999999999888765 367778888999999999999999999988874 5655554 4566677788
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM---KVKADFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
++.++|.++++...+ -...+++...++...|.-.++.+-|+.+++++ +.. ++..|..+.-+|.-.++++.++..
T Consensus 304 ~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999865 23346788888888999999999999999865 554 777888899999999999999999
Q ss_pred HHHhhccC--CC-CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 482 AKKLFELE--PN-NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 482 ~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|++++..- |+ ....|..|+.+....|++.-|.+.|+.....+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99998753 33 34678889999999999999999998876543
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=2.7e-07 Score=90.31 Aligned_cols=226 Identities=13% Similarity=0.018 Sum_probs=141.7
Q ss_pred ChhHHHHHHHHhHHcCCCCCC--hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006457 269 LAAEALDVFDQMVKSTDVKCN--AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARK 346 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 346 (644)
..+.++..+.++.......|+ ...|......+...|+.+.|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555555522222222 2334455555666677777777776666654 3456777888888888888888888
Q ss_pred HHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC
Q 006457 347 AFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI 423 (644)
Q Consensus 347 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 423 (644)
.|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 8887754 3 4567888888888889999999999988874 45433222222233456788999999876543 23
Q ss_pred CCChhHHHHHHHHHhhcCCHHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC-Cch
Q 006457 424 EPGVEHYGCMVDLLGRAGKLKEA--YDLIEGM-KV----KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN-NCG 494 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A--~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~ 494 (644)
.|+...+ .++.. ..|++.++ .+.+.+. .. .| ....|..+...+...|++++|...|+++++.+|. ...
T Consensus 196 ~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3433222 23333 34444333 3222221 11 11 2357889999999999999999999999999974 444
Q ss_pred hHHHHHHH
Q 006457 495 YHVLLSNI 502 (644)
Q Consensus 495 ~~~~l~~~ 502 (644)
+...++..
T Consensus 273 ~~~~~~e~ 280 (296)
T PRK11189 273 HRYALLEL 280 (296)
T ss_pred HHHHHHHH
Confidence 44444443
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.4e-05 Score=84.45 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=129.9
Q ss_pred HHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCc
Q 006457 10 SSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDL 89 (644)
Q Consensus 10 ~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 89 (644)
+.++..|+..|+++++.-...+....|| |-.+|+...+ -.++.+.++...|.+.. |...-+..+...+...+..
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhh
Confidence 4456667777777777666666655555 5667777766 46788888888777633 2223333333333333333
Q ss_pred HHHHHHHHHHHH-------------------hCC----------CCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC
Q 006457 90 HSGKQAHQQAFI-------------------FGF----------HRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRN 140 (644)
Q Consensus 90 ~~a~~~~~~~~~-------------------~g~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 140 (644)
..+...+-.+++ .++ .-+.+-+..+...|.+.|-...|++.+..+....+
T Consensus 559 Qq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR- 637 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKR- 637 (1666)
T ss_pred hhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHH-
Confidence 332222222221 110 01112244566778888888888888877654311
Q ss_pred eecHHH-----HHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHH
Q 006457 141 IVSWTS-----MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI 215 (644)
Q Consensus 141 ~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 215 (644)
++..+. .+-.|.-.-.++++++.++.|. ..+++.|..+...+..-|...-..+...++|+...
T Consensus 638 ~vVhth~L~pEwLv~yFg~lsve~s~eclkaml------------~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fk 705 (1666)
T KOG0985|consen 638 VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAML------------SANIRQNLQIVVQVATKYHEQLGAQALIELFESFK 705 (1666)
T ss_pred HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhc
Confidence 111111 1234555556788999999998 77777777766655554443332333333333322
Q ss_pred H-----------hCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006457 216 K-----------RGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM 249 (644)
Q Consensus 216 ~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 249 (644)
. -.+..|+.+.-..|.+.++.|++.+.+++-++-
T Consensus 706 s~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 706 SYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred cchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 1 135667788888999999999999999888764
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=5.8e-06 Score=85.34 Aligned_cols=431 Identities=13% Similarity=0.079 Sum_probs=266.1
Q ss_pred cCCCchHHHHH----HHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 006457 50 RGGDSVEALRA----FSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELS 125 (644)
Q Consensus 50 ~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 125 (644)
-..+.+++.-. +.++....+.-|...|..+.-++...|+++.+.+.|+.....- -.....|+.+-..|..+|.-.
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s 374 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDS 374 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccch
Confidence 34455555433 3333344466678888888888889999999999999887643 335678888888999999999
Q ss_pred HHHHHHhhCCCCC--CCeecHHHHH-HHHHh-CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh--
Q 006457 126 DARKLFDEIPQRI--RNIVSWTSML-TGYVQ-NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS-- 199 (644)
Q Consensus 126 ~A~~~~~~~~~~~--~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~-- 199 (644)
.|..+++.-.... |+..+--.++ ..|.+ -+..+++++.-.+....... ....+.|-..-+..+--...
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~------~~~~l~~~~~l~lGi~y~~~A~ 448 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG------QRSHLKPRGYLFLGIAYGFQAR 448 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHhHhh
Confidence 9999998765542 4333333333 33333 36677777776666521100 02233343333322222111
Q ss_pred cCC-------CchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCHhHHHHHHHHHHHCC
Q 006457 200 RVT-------VNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGM----IEKDAVTWNSIIAIYAQNG 268 (644)
Q Consensus 200 ~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g 268 (644)
... ...++.+.++..++.+ +.|+.+.-.+.--|+..++++.|.+..++. ...+...|-.+.-.+...+
T Consensus 449 ~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 449 QANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 111 1334556666666655 334444444555678888999999888776 3348899999999999999
Q ss_pred ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHH-------HH----------HHH----HhCC------
Q 006457 269 LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCI-------HD----------QVI----KMDL------ 321 (644)
Q Consensus 269 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i-------~~----------~~~----~~~~------ 321 (644)
++.+|+.+.+......|. |......-+..-...++.+++... |+ +.. +.|.
T Consensus 528 r~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 999999999887644332 111111111111112222222221 11 111 1111
Q ss_pred -CCchhHHHHHHHHHH---hcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006457 322 -EESVIVGTSIIDMYC---KCGQVDLARKAFNQMKEKNV------RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY 391 (644)
Q Consensus 322 -~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 391 (644)
...+.++..+..... +.-..+.....+...+.|+. ..|......+.+.++.++|...+.+..+. .+-..
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~ 684 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSA 684 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhH
Confidence 111222222222111 11111111122222222331 34666777888889999998888877663 23344
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYD--LIEGM-KVKA-DFVVWGSLL 466 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll 466 (644)
..|......+...|..++|.+.|... .-+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|-.+.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 45555556777889999999999887 457775 7788999999999998777777 77766 5555 677999999
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
..+.+.|+.+.|.+.|.-+.++++.+|.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999877664
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=3.1e-06 Score=86.30 Aligned_cols=187 Identities=17% Similarity=0.209 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
....+..|..+++.+..... ...-|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|+++.|.++-.+
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHH
Confidence 33445555555555444321 12234445555666666666666655432 234445556666666666555443
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--H
Q 006457 382 MIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKAD--F 459 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~ 459 (644)
.. |.......|.+-..-.-..|++.+|.+++-.+ | .|+. -|.+|-+.|..++.+++..+-. |+ .
T Consensus 817 ~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h--~d~l~ 882 (1636)
T KOG3616|consen 817 CH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH--GDHLH 882 (1636)
T ss_pred hc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhC--hhhhh
Confidence 32 22222333433334444555555555554433 1 2332 2455556666666555555431 22 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHH
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
.|...+..-+...|++..|+.-|-++ .-+-.-.++|-..+.|++|.++-+
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 24444555555666666666555443 224445567777777777766544
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=1.8e-05 Score=80.27 Aligned_cols=422 Identities=12% Similarity=0.083 Sum_probs=215.6
Q ss_pred chhHHHHHHHHHhc---CCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 6 SSSVSSVVSNVDKH---STNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 6 ~~~~~~l~~~~~~~---~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
...|-.++..|-.. ..+..+..++.+.|+.|++.+- ..-.+...|+.++|......-.+..++ +.+.|+.+--.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAm--kGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAM--KGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHh--ccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 34444455544332 2445555566655665554332 222345568888888888777664433 56777777766
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREAL 161 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 161 (644)
.....++++|...+..+++.+ +.+...+..|.-.=++.|+++.....-....+. +.....|..+..++.-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777788999999999888865 445667776666666677777766655555443 235677888888888899999999
Q ss_pred HHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHH------hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh
Q 006457 162 LLFKEFLLEESECGGASENSDNVFVDSVAIASVLSA------CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR 235 (644)
Q Consensus 162 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 235 (644)
.++++..+. ..-.|+...+...... ....|.++.+.+.+...... +......-..-.+.+.+
T Consensus 164 ~il~ef~~t-----------~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 164 EILEEFEKT-----------QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHh-----------hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHH
Confidence 998888631 1134565555443322 23445555555544332211 11122233344556777
Q ss_pred cCCHHHHHHHHhcCCC--CCHhHHHHH-HHHHHHCCChhHHH-HHHHHhHHcCCCCCChh-hHHHHHHHHHccccHHHHH
Q 006457 236 GGHVDVSRKVFDGMIE--KDAVTWNSI-IAIYAQNGLAAEAL-DVFDQMVKSTDVKCNAV-TLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 236 ~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~ 310 (644)
.+++++|..++..+.. ||...|+.. ..++.+-.+.-+++ .+|.... .. .|... ....=++......-.+...
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls--~~-y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS--EK-YPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--hc-CcccccchhccHHHhCcchhHHHHH
Confidence 7788888888777744 344444433 33333333333444 4554443 11 12111 1111111111222234444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcCC--------------CChhhHH--HHHHHHHhcC
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDL----ARKAFNQMKE--------------KNVRSWT--AMIAGYGMHC 370 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~--------------~~~~~~~--~li~~~~~~g 370 (644)
.++....+.|+++ ++..+...|-.....+- +..+...+.. |....|+ -++..|-..|
T Consensus 309 kyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 309 KYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 5555556666544 33344444433222111 1111111110 1112222 2344455555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
+++.|+.+++...+. .|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-.--+.-..++.+.++|.++
T Consensus 386 ~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 386 DYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred cHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHH
Confidence 555555555555542 34333 233333445555555555555555522 1123333222333444455555555555
Q ss_pred HHhC
Q 006457 450 IEGM 453 (644)
Q Consensus 450 ~~~~ 453 (644)
....
T Consensus 462 ~skF 465 (700)
T KOG1156|consen 462 LSKF 465 (700)
T ss_pred HHHh
Confidence 4433
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=1.2e-05 Score=81.42 Aligned_cols=408 Identities=10% Similarity=0.040 Sum_probs=218.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHH
Q 006457 87 HDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFK 165 (644)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 165 (644)
+++..+....+.+++ +.+-...+....--.+...|+.++|......-... ..+.+.|..+.-.+-...++++|++.|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 444455555555544 22222222222222233446666666655544332 3456667776666666677777777777
Q ss_pred HhHhhhhccCCCCCCCCCccCC-HhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHH
Q 006457 166 EFLLEESECGGASENSDNVFVD-SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRK 244 (644)
Q Consensus 166 ~m~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 244 (644)
... .+.|| ...+.-+--.-++.++++..........+.. +.....|..+.-++.-.|+...|..
T Consensus 100 nAl--------------~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 100 NAL--------------KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHH--------------hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 23333 2223222222334445444444444433321 2233456666666777777777777
Q ss_pred HHhcCCC-----CCHhHHHHH------HHHHHHCCChhHHHHHHHHhHHcCCCCCChhh-HHHHHHHHHccccHHHHHHH
Q 006457 245 VFDGMIE-----KDAVTWNSI------IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT-LSAVLLAIAHLGVLRLGKCI 312 (644)
Q Consensus 245 ~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~i 312 (644)
+.+.... ++...+.-. ......+|..++|++.+..-. ..+ .|... --+-...+.+.+++++|..+
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE--KQI-VDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh--hHH-HHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 7665421 233222221 234456777777777665553 111 12222 22333445677788888888
Q ss_pred HHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHH-HHHHhcCCC-------ChhhHHHHHHHHHhcCC-HHHHHHHHHHH
Q 006457 313 HDQVIKMDLEESVIV-GTSIIDMYCKCGQVDLAR-KAFNQMKEK-------NVRSWTAMIAGYGMHCR-AREALDLFYKM 382 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~-~~~~~~~~~-------~~~~~~~li~~~~~~g~-~~~A~~~~~~m 382 (644)
+..++..+ ||..- |-.+..++.+-.+.-++. .+|....+. --...+. ..... .+..-+++..+
T Consensus 242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv-----l~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV-----LNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH-----hCcchhHHHHHHHHHHH
Confidence 87777754 44333 334444554333333333 555544321 0011111 11122 23344566777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHhhhcC----------CCCChhH--HHHHHHHHhhcCCHHHH
Q 006457 383 IKAGVRPNYITFVSVLSACSHAGLVQE----GWHWLNTMGHEFN----------IEPGVEH--YGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----------~~p~~~~--~~~li~~~~~~g~~~~A 446 (644)
.+.|+++--..+.++.. .-...+- +..+...+ ...| -+|.... +-.++..+-+.|+++.|
T Consensus 315 l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSL-SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred hhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhc-ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 78887664444333332 2111111 11222222 1011 1445444 44677888899999999
Q ss_pred HHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 447 YDLIEGM-KVKADFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 447 ~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
...++.. ..-|..+ .|..-...+...|++++|...++++.+++-.|.....--++-..++.+.++|.++.....+.|.
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9999876 4455544 4444557778889999999999999999866655555666777789999999999988876664
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=1.1e-07 Score=83.79 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=139.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVD 435 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 435 (644)
+...|.-+|.+.|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+.|+... .+.| +..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3455777899999999999999999985 45 45688888889999999999999999884 4566 4778888899
Q ss_pred HHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 436 LLGRAGKLKEAYDLIEGMKVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
-++..|++++|...|++.-..| -..+|..+..+..+.|+.+.|+..+++.++++|+.+.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999874333 245888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 006457 512 VERTRSLMKNRRL 524 (644)
Q Consensus 512 a~~~~~~m~~~~~ 524 (644)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877664
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=1.3e-05 Score=83.09 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDM 334 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 334 (644)
++.-+...|...|++++|++.+++.. . ..|+ ...|..-...+-+.|++.+|...++...... .-|-.+-+-.+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI-~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI-E--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH-h--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHH
Confidence 33555677888888888888888877 2 2344 4567777777888888888888888887765 3466666677778
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh----------hhH--HHHHHHHHhcCCHHHHHHHHHHHHHc--CC---C---------
Q 006457 335 YCKCGQVDLARKAFNQMKEKNV----------RSW--TAMIAGYGMHCRAREALDLFYKMIKA--GV---R--------- 388 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~--------- 388 (644)
+.++|++++|.+++.....++. ..| .....+|.+.|++..|+.-|....+. .+ +
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~R 351 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLR 351 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 8888999998888887765542 123 33456788888888888776665432 01 1
Q ss_pred -CCHHHHHHHHHHHHccCC-------HHHHHHHHHHHhhhcCCCC-----------ChhHHHHHHHHH---hhcCCHHHH
Q 006457 389 -PNYITFVSVLSACSHAGL-------VQEGWHWLNTMGHEFNIEP-----------GVEHYGCMVDLL---GRAGKLKEA 446 (644)
Q Consensus 389 -p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A 446 (644)
.+..+|..++...-+... ...|.+++-.+........ +..--..+-.-. .+...-+++
T Consensus 352 K~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~ 431 (517)
T PF12569_consen 352 KMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEA 431 (517)
T ss_pred hccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHH
Confidence 222334444433222111 1234444444422100000 000000010000 111111111
Q ss_pred HHHHH-----------hC----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCc
Q 006457 447 YDLIE-----------GM----K--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW 509 (644)
Q Consensus 447 ~~~~~-----------~~----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 509 (644)
...-. +. + ..||+.- ..|+ ....-+++|.+.++.+.+..|++..+|.+--.+|.+.|++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~ 507 (517)
T PF12569_consen 432 EKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKY 507 (517)
T ss_pred HHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcH
Confidence 11110 00 1 1122211 1111 2334578899999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 006457 510 EDVERTRSL 518 (644)
Q Consensus 510 ~~a~~~~~~ 518 (644)
--|.+.+..
T Consensus 508 LLaLqaL~k 516 (517)
T PF12569_consen 508 LLALQALKK 516 (517)
T ss_pred HHHHHHHHh
Confidence 998887653
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=3.9e-06 Score=85.59 Aligned_cols=355 Identities=15% Similarity=0.133 Sum_probs=183.4
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhH
Q 006457 112 SALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAI 191 (644)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~ 191 (644)
-+.|..|.+.|.+..|.+....-.....|......+..++.+..-+++|-++|+++.. +
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------------------~ 677 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------------------F 677 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------------------H
Confidence 3567888888888887766433222124555566666666666667777777776541 1
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccH-HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCCh
Q 006457 192 ASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGV-GNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLA 270 (644)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 270 (644)
...+..+.+-..+.+|.++-... ++..++. -..-..-+...|+++.|..-|-+.. ..-..|.+-....++
T Consensus 678 dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew 748 (1636)
T KOG3616|consen 678 DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEW 748 (1636)
T ss_pred HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhh
Confidence 12233333322333443333222 1111111 1222333444566666665553321 111234445566677
Q ss_pred hHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006457 271 AEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (644)
.+|+.+++.++ ... .-.--|..+...|++.|+++.|+++|.+. ..++-.|+||.+.|++++|.++-.+
T Consensus 749 ~kai~ildniq-dqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 749 KKAISILDNIQ-DQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhHhHHHHhh-hhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 77777777765 222 23334566667777777777777776543 1344567777777777777777766
Q ss_pred cCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----------cC-----------CCCC--HHHHHHHHHHHHccC
Q 006457 351 MKEKN--VRSWTAMIAGYGMHCRAREALDLFYKMIK----------AG-----------VRPN--YITFVSVLSACSHAG 405 (644)
Q Consensus 351 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g-----------~~p~--~~t~~~ll~a~~~~g 405 (644)
...|. +.+|-+-..-+-.+|++.+|.++|-.... .| ..|+ ..|...+..-+...|
T Consensus 817 ~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 817 CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhcc
Confidence 65542 33444444445555555555544422110 00 1122 123334444555556
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006457 406 LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKL 485 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (644)
++..|...|-+.. -|.+-+.+|-..+.|++|.++-+.-+- .|..-.-..+.+-...| +.|.+++.+.
T Consensus 897 ~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flwaksigg--daavkllnk~ 963 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLWAKSIGG--DAAVKLLNKH 963 (1636)
T ss_pred ChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHhhCc--HHHHHHHHhh
Confidence 6666655554441 245556666667777777666554431 13222222333333333 3445554442
Q ss_pred ------hc------------------cCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 486 ------FE------------------LEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 486 ------~~------------------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+. ....-+..+.-++.-+...|++++|.+-+-+..+
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 11 0112245566666777788999998776655544
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=8.7e-07 Score=91.74 Aligned_cols=255 Identities=11% Similarity=0.087 Sum_probs=150.7
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-----
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC----- 338 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~----- 338 (644)
+...|++++|++.+..-. ..+......+......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 455566666666655442 2222223334444455556666666666666666654 23333334444443221
Q ss_pred CCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 339 GQVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAR-EALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 339 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
.+.+...++|+++.. |.......+.-.+.....+. .+..++..+...|+++ +|+.|-.-|......+-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 134555556655543 21111111211122211222 3555666777777654 44444444555555555555555
Q ss_pred HHhhhc-------------CCCCChh--HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 006457 416 TMGHEF-------------NIEPGVE--HYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 416 ~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 478 (644)
...... .-.|+.. ++..+...|-+.|++++|++++++. ...|. +..|..-...+...|++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 543221 1123333 3455677788999999999999865 55565 44677777888899999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
.+.++.+.++++.|-....-.+..+.++|++++|.+++....+.+.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999998888888888888999999999999988876654
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=5.6e-08 Score=96.70 Aligned_cols=249 Identities=15% Similarity=0.157 Sum_probs=186.3
Q ss_pred HHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHH
Q 006457 300 IAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREAL 376 (644)
Q Consensus 300 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 376 (644)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888765 56777888888888888888888888888765 35667777778899999888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHH--------HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 006457 377 DLFYKMIKAGVRPNYITFVSV--------LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
..++.=+... |-......- -..+.....+....++|-.+....+..+|.+++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9988876532 111000000 012223334456667777776766777899999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcC
Q 006457 449 LIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAK 526 (644)
Q Consensus 449 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 526 (644)
.|+.+ .++| |..+||-|...++...+.++|+.+|.+++++.|.-......|+-.|...|.++||.+.+-......-+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99976 5677 677999999999999999999999999999999999999999999999999999999887765322110
Q ss_pred CCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 527 TPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 527 ~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
. -..+..++ ...|++.|+..+..|.
T Consensus 532 -~--------------~~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 532 -R--------------NHNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred -c--------------ccccCCcc-hHHHHHHHHHHHHHcC
Confidence 0 00011222 6788888886555553
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=1.6e-06 Score=76.68 Aligned_cols=196 Identities=15% Similarity=0.078 Sum_probs=133.5
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC
Q 006457 295 AVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 295 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 371 (644)
.+.-.|...|+...|+.-++..+++. +.+..++..+...|.+.|+.+.|.+.|++... .+-...|....-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 34444555566666666666666554 34455666777777777777777777776543 355566777777778888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 006457 372 AREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
+++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+ +.|+ ......+.....+.|++-.|..+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 888888888877643222 245777777777788888888888887744 3443 55666777788888888888888
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 450 IEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 450 ~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
++.. ...++..+.-..|..-...||.+.+.+.-.++.+..|.+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 7765 23356666666666677788888888877777777787644
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.2e-05 Score=75.18 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHhcCCHHHHHHHHhcCC--CC-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHH-HHHHc-ccc
Q 006457 231 DAYARGGHVDVSRKVFDGMI--EK-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVL-LAIAH-LGV 305 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll-~a~~~-~~~ 305 (644)
..+...|+.++|.-.|+... .| +..+|..|+.+|...|.+.+|.-+-+...+ -++.+..+...+. ..|.- ...
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchh
Confidence 34445556666655555442 22 455666666666666666665554443321 1122223332221 11211 112
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK--EKNVRSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
-++|+.+++...+.. +.-....+.+...+...|..+++..++++.. .+|....+.|.+.+...+.+.+|++.|....
T Consensus 420 rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345555555444432 1223334445555555555555555555443 2455555555555555555555555555554
Q ss_pred H
Q 006457 384 K 384 (644)
Q Consensus 384 ~ 384 (644)
.
T Consensus 499 r 499 (564)
T KOG1174|consen 499 R 499 (564)
T ss_pred h
Confidence 4
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00016 Score=72.88 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh--cc
Q 006457 11 SVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS--AL 86 (644)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~ 86 (644)
+=++.+...+++++|.+..+++... | +...+.+=+-++.+.+++++|+.+.+.-.. +..+.+-+ +=++|+ +.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 3456666777888888777776432 2 444555656666677777777755443211 00000000 122222 34
Q ss_pred CCcHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHhhC-------------------------------
Q 006457 87 HDLHSGKQAHQQAFIFGFHRDV-FVSSALIDMYSKCGELSDARKLFDEI------------------------------- 134 (644)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~------------------------------- 134 (644)
+..++|...+. |..++. .+...-...+-+.|++++|..+++.+
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 44444444443 222211 12222223333444444444444433
Q ss_pred CCCCCCeecHHHHH---HHHHhCCChhHHHHHHHHhHhhhhccCCCCCC-CCCccCCHhhHHH-HHHHhhcCCCchHHHH
Q 006457 135 PQRIRNIVSWTSML---TGYVQNDNAREALLLFKEFLLEESECGGASEN-SDNVFVDSVAIAS-VLSACSRVTVNGVTEG 209 (644)
Q Consensus 135 ~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~ 209 (644)
+. ....+|..+- -.+...|++.+|+++++...+.+.+....... ..++.-+..+... +.-.+-..|+.+++.+
T Consensus 168 ~~--v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 168 PE--VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred cC--CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 33 1233444433 35667899999999999885433332111111 2233333233222 2223556788899999
Q ss_pred HHHHHHHhC
Q 006457 210 AHGFVIKRG 218 (644)
Q Consensus 210 ~~~~~~~~g 218 (644)
++..+++..
T Consensus 246 iy~~~i~~~ 254 (652)
T KOG2376|consen 246 IYVDIIKRN 254 (652)
T ss_pred HHHHHHHhc
Confidence 988888876
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=6.4e-07 Score=86.31 Aligned_cols=146 Identities=17% Similarity=0.075 Sum_probs=80.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH---HHHHHHHHhhcCCH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH---YGCMVDLLGRAGKL 443 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~ 443 (644)
...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 3345555555444321 1233333344455555555555555555521 2222211 11222222222356
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCc-hHHHHHHHHHh
Q 006457 444 KEAYDLIEGMK--VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRW-EDVERTRSLMK 520 (644)
Q Consensus 444 ~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 520 (644)
.+|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77777777662 3456667777777777788888888888888888888887777777777777777 55666777766
Q ss_pred h
Q 006457 521 N 521 (644)
Q Consensus 521 ~ 521 (644)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.1e-05 Score=78.22 Aligned_cols=399 Identities=10% Similarity=-0.005 Sum_probs=194.5
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC-CeecHHHHHHHHHhCCChhH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR-NIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 159 (644)
++....|+++.|...|-..+... +++...|+.-..+|++.|++++|.+=-.+-.+..| -...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34556788888888888888776 44778888888888888888888765555444334 35678888888888888888
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccC-CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHH-----HH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFV-DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLID-----AY 233 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~-----~~ 233 (644)
|+.-|.+=+ ...| |...++.+..+.. .+.+. + ....++..+..+.. .+
T Consensus 89 A~~ay~~GL--------------~~d~~n~~L~~gl~~a~~----~~~~~-----~---~~~~~p~~~~~l~~~p~t~~~ 142 (539)
T KOG0548|consen 89 AILAYSEGL--------------EKDPSNKQLKTGLAQAYL----EDYAA-----D---QLFTKPYFHEKLANLPLTNYS 142 (539)
T ss_pred HHHHHHHHh--------------hcCCchHHHHHhHHHhhh----HHHHh-----h---hhccCcHHHHHhhcChhhhhh
Confidence 888887733 3344 3445555555541 11000 0 01112222222211 11
Q ss_pred HhcCCHHHHHHHHhcCCCCCHhH---HHHHHHHHHHCCChh-HHHHHHHHhHHcCCCCC---------------------
Q 006457 234 ARGGHVDVSRKVFDGMIEKDAVT---WNSIIAIYAQNGLAA-EALDVFDQMVKSTDVKC--------------------- 288 (644)
Q Consensus 234 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~p--------------------- 288 (644)
.....+-.-++.+..-+.. +-. ...++.+.......+ .....-..+....+..|
T Consensus 143 ~~~~~~~~~l~~~~~~p~~-l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k 221 (539)
T KOG0548|consen 143 LSDPAYVKILEIIQKNPTS-LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVK 221 (539)
T ss_pred hccHHHHHHHHHhhcCcHh-hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHH
Confidence 1111122222222111100 000 000111110000000 00000000000001111
Q ss_pred -ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------h
Q 006457 289 -NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNV----------R 357 (644)
Q Consensus 289 -~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~ 357 (644)
-..-...+.++.-+..+++.+.+-+....... .++.-++....+|...|.+......-+...+.+- .
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 01123445566666677788888887777765 5666677777888888887777666555443211 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-HHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVE-HYGCMVDL 436 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~ 436 (644)
+...+..+|.+.++++.|+..|.+....-..||..+=. ...+++....+.. .-+.|... -...=...
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~l---------k~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKL---------KEAEKALKEAERK---AYINPEKAEEEREKGNE 367 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHH---------HHHHHHHHHHHHH---HhhChhHHHHHHHHHHH
Confidence 22234456777788888999888876654454433211 1122222222211 11222210 00111333
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 437 LGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
+.+.|++..|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+.+..|.-=+.++....+|++|.+
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555443 1222 334444444444555555555555555555555555555554555555555555555
Q ss_pred HHHHHhh
Q 006457 515 TRSLMKN 521 (644)
Q Consensus 515 ~~~~m~~ 521 (644)
.+.+-.+
T Consensus 448 ay~eale 454 (539)
T KOG0548|consen 448 AYQEALE 454 (539)
T ss_pred HHHHHHh
Confidence 5544433
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=2.7e-05 Score=79.16 Aligned_cols=257 Identities=11% Similarity=-0.064 Sum_probs=137.8
Q ss_pred HHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 006457 262 AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEES-VIVGTSIIDMYC 336 (644)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~ 336 (644)
..+...|++++|.+.+++.. .. .+.|...+.. ...+.. .+....+.+.+.. ..+..|+ ......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l-~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLL-DD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHH-HH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 34556677777777777765 21 1222222221 112222 2333333333332 1111222 233344555677
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCCHHHH
Q 006457 337 KCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPNY--ITFVSVLSACSHAGLVQEG 410 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a 410 (644)
..|++++|...+++..+ .+...+..+...|...|++++|..++++...... .|+. ..+..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777653 2445666677777777888888887777765321 1222 2344566667777888888
Q ss_pred HHHHHHHhhhcCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHH
Q 006457 411 WHWLNTMGHEFNIEPGVEHY-G--CMVDLLGRAGKLKEAYDL---IEGM-KVKA---DFVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
..+++.........+..... + .++.-+...|..+.+.+. .... +..| ..........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 88887763211111111111 1 223333334432222222 1111 1101 11222345566677888888888
Q ss_pred HHHHhhccC---------CCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 481 AAKKLFELE---------PNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 481 ~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.++.+.... +.......+.+.++...|++++|.+.+......+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887775522 1134556677788899999999999998877543
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=0.00016 Score=83.34 Aligned_cols=361 Identities=9% Similarity=-0.006 Sum_probs=182.3
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCCCCeec--HHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHH
Q 006457 115 IDMYSKCGELSDARKLFDEIPQRIRNIVS--WTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIA 192 (644)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~ 192 (644)
...|...|++.+|......... ..... ...........|+++.+...+..+. ......+.....
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d--~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp------------~~~~~~~~~l~~ 413 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGD--AQLLRDILLQHGWSLFNQGELSLLEECLNALP------------WEVLLENPRLVL 413 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCC------------HHHHhcCcchHH
Confidence 3345556666666665555443 21110 1111223444566666666665542 111111111222
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCC------CC--ccHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCH----hH
Q 006457 193 SVLSACSRVTVNGVTEGAHGFVIKRGFD------SE--VGVGNTLIDAYARGGHVDVSRKVFDGMIE----KDA----VT 256 (644)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~ 256 (644)
.....+...++++.+...+..+...--. +. ......+...+...|++++|...+++... .+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 2233344567777777777665442111 11 11122233455677788888777766422 121 23
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHhHHc---CCC-CCChhhHHHHHHHHHccccHHHHHHHHHHHHHh----CCCC---ch
Q 006457 257 WNSIIAIYAQNGLAAEALDVFDQMVKS---TDV-KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM----DLEE---SV 325 (644)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~~---~~ 325 (644)
++.+...+...|++++|...+.+.... .+- .+...++..+...+...|+++.|...+++.... +... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455556667788888887777766421 110 011123344455566778888887777665542 2111 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH--
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE------K--NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR-PNYITF-- 394 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-- 394 (644)
..+..+...+...|++++|...+.+... + ....+..+...+...|++++|.+.+.+.....-. .....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2334455556666788777777665432 1 1223444555666777777777777776432100 000101
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HH
Q 006457 395 ---VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG---VEHYGCMVDLLGRAGKLKEAYDLIEGM-------KVKAD-FV 460 (644)
Q Consensus 395 ---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 460 (644)
...+..+...|+.+.|..++...... ..... ...+..+..++...|+.++|...+++. +..++ ..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 01123334467777777776654221 10000 111334555667777777777776654 11111 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
+...+..++...|+.++|...+.+++++..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 444455666777777777777777777653
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=9.9e-07 Score=85.03 Aligned_cols=249 Identities=10% Similarity=-0.008 Sum_probs=158.8
Q ss_pred HHhcCCHHHHHHHHhc--CCC-CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 233 YARGGHVDVSRKVFDG--MIE-KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 233 ~~~~g~~~~A~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
+.-.|++..++.-.+. ... .+.....-+.++|...|+++.++ .++. . +-.|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~-~-~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIK-K-SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS--T-TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhc-c-CCChhHHHHHHHHHHHhCccchHHH
Confidence 4456777777754441 111 12334555677888888877544 4443 2 2266665555555444443333444
Q ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006457 310 KCIHDQVIKMDLE-ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR 388 (644)
Q Consensus 310 ~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 388 (644)
..-+......... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333333222222 23333344445677789999999988775 45666667888999999999999999999863 3
Q ss_pred CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 006457 389 PNYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVW 462 (644)
Q Consensus 389 p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 462 (644)
.| .+...+..++.. ...+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| |+.+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 44 444455555433 3468999999999855 45678889999999999999999999998875 3344 45567
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHhhccCCCCc
Q 006457 463 GSLLGACRIHKNV-DLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 463 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 493 (644)
..++......|+. +.+.+...++....|+.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7777777777777 678889999988899864
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=1.5e-05 Score=84.43 Aligned_cols=507 Identities=11% Similarity=0.012 Sum_probs=263.5
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhcCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCC-CCCCcccHHHHHHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKYVDK--NNVFSWNSVIADLARGGDSVEALRAFSSMRKLS-LTPTRSTFPCAIKS 82 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~ 82 (644)
...|+.|.+.|....+...|.+.|+..-+- .+..++......|++..+++.|..+.-..-+.. ...-...|..+--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 467888888888888899999999886542 267789999999999999999988732222211 00011122222223
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHH--HHHHHHhCCChhHH
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTS--MLTGYVQNDNAREA 160 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A 160 (644)
+...++...+..-|+..++.. +-|...|..|..+|.++|++..|.++|.+.....|+.. |.. ....-+..|.+.+|
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~-y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK-YGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH-HHHHHHHHHHHHhhhHHHH
Confidence 445677777888788777754 45778899999999999999999999988766423221 111 11223344555555
Q ss_pred HHHHHHhHhhhhcc--------------------------------------------CCCCCC------------CCCc
Q 006457 161 LLLFKEFLLEESEC--------------------------------------------GGASEN------------SDNV 184 (644)
Q Consensus 161 ~~~~~~m~~~~~~~--------------------------------------------~~~~~~------------~~~~ 184 (644)
+..+......-... ...+.. ...+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 55554443211100 000000 0001
Q ss_pred ---cCCHhhHHHHHHHhhcCCCchHHHHHHHH-----HHHhCCCCCccHHHHHHHHHHh----cC----CHHHHHHHHhc
Q 006457 185 ---FVDSVAIASVLSACSRVTVNGVTEGAHGF-----VIKRGFDSEVGVGNTLIDAYAR----GG----HVDVSRKVFDG 248 (644)
Q Consensus 185 ---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-----~~~~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~ 248 (644)
.|+.....++..-.-..+....-. ++-. .....+..++..|..|+..|.+ +| +...|...+..
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 111111111111111111110000 0000 0001112223333333333322 11 12345555544
Q ss_pred C---CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCch
Q 006457 249 M---IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESV 325 (644)
Q Consensus 249 ~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 325 (644)
. ...+...||.|.-. ...|.+.-|.-.|-+-. ...+-...+|..+.-.|....+++.|...+...+... +.+.
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~--~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSR--FSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhh--hccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 3 23456666665544 33345555554444443 1223345556555556666677777777777665543 2233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhc-----C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---------cCCC
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQM-----K---EKNVRSWTAMIAGYGMHCRAREALDLFYKMIK---------AGVR 388 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~ 388 (644)
..|-...-..-..|+.-++..+|..- . .++..-|-+-..-..++|+.++-+..-++.-. .|.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 33322222223455555666665531 1 13444454444455566666554444333221 1234
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 006457 389 PNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGC----MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGS 464 (644)
Q Consensus 389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 464 (644)
-+...|........+.+.+..|.+...+.+.=...+-+...|+. +...+...|.++.|..-+...+..-|..+-.+
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence 45566777777777777777777666665322222344455553 33445566778877766665544444444444
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchh---HHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGY---HVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
-+.. .-.|+++++.+.|++++.+-.++... ..-++......+.-+.|...+-+..
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 3333 34578899999999998875444332 2233334455666666666554443
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=2.2e-05 Score=71.94 Aligned_cols=314 Identities=13% Similarity=0.069 Sum_probs=188.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHH-HHHHh
Q 006457 8 SVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCA-IKSCS 84 (644)
Q Consensus 8 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 84 (644)
-+.+++..+.+..++++|.+++....++ | +....+.|.-+|-...++..|-..++++-.. .|...-|..- ...+-
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3778888999999999999999776554 3 5567788888888999999999999999873 4555444432 23445
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhHHHHHH--HHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHH
Q 006457 85 ALHDLHSGKQAHQQAFIFGFHRDVFVSSALI--DMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALL 162 (644)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 162 (644)
+.+.+..|..+...|... +....-..-+ ...-..+++..+..+.++.+.. .+..+.+...-...+.|+++.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHH
Confidence 667788888887776542 2211111111 1223568999999999999842 455566666666778999999999
Q ss_pred HHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHH
Q 006457 163 LFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVS 242 (644)
Q Consensus 163 ~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 242 (644)
-|+...+ ..|..| ...|+..+..+ +.++...|.+...+++.+|+...+...- |..-+.
T Consensus 166 kFqaAlq-----------vsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~teg 223 (459)
T KOG4340|consen 166 KFQAALQ-----------VSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGI---------GMTTEG 223 (459)
T ss_pred HHHHHHh-----------hcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceecc
Confidence 9999873 445554 45677666544 5688899999999999988653322110 000000
Q ss_pred HHHHhcCCCC-------CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 243 RKVFDGMIEK-------DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 243 ~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
.+ .+.+..+ -+..+|.-...+.+.|+++.|.+.+..|..+..-..|++|...+.-.- ..+++..+..-+..
T Consensus 224 iD-vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 224 ID-VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQF 301 (459)
T ss_pred Cc-hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHH
Confidence 00 0000000 012333333444556666666666666643333444555554432211 12334444444444
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 316 VIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
+...+. ....++..++-.|||..-++.|-.++.+-.
T Consensus 302 LL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 302 LLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 444432 233455556666666666666666665433
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=6.2e-05 Score=86.81 Aligned_cols=323 Identities=12% Similarity=0.000 Sum_probs=204.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC----CC----C--H--hHHHHHHHHHHHC
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI----EK----D--A--VTWNSIIAIYAQN 267 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~----~--~--~~~~~li~~~~~~ 267 (644)
..|....+......+.......++.........+...|++++|...++... .. + . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555555443211112233344455566678899999988887651 11 1 1 1122233456689
Q ss_pred CChhHHHHHHHHhHHcCCCCCCh----hhHHHHHHHHHccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhc
Q 006457 268 GLAAEALDVFDQMVKSTDVKCNA----VTLSAVLLAIAHLGVLRLGKCIHDQVIKM----DLE-ESVIVGTSIIDMYCKC 338 (644)
Q Consensus 268 g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~~~~ 338 (644)
|++++|...+++..+... ..+. ...+.+...+...|+++.|...+...... |.. ........+...+...
T Consensus 466 g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 999999999998762211 1121 23445555667889999999999887653 211 1123455667788899
Q ss_pred CCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHc
Q 006457 339 GQVDLARKAFNQMKE-------KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAG--VRPN--YITFVSVLSACSH 403 (644)
Q Consensus 339 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~ 403 (644)
|+++.|...+++... ++ ...+..+...+...|++++|...+++..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 11 1234455566777899999999999876531 1222 2344445567778
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhc
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHY-----GCMVDLLGRAGKLKEAYDLIEGMKVK--ADF----VVWGSLLGACRIH 472 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~ 472 (644)
.|++++|...+..+..-.........+ ...+..+...|+.+.|.+.+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988874311111111111 11224455689999999998775311 111 1234566777889
Q ss_pred CChhHHHHHHHHhhccC------CCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 473 KNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|+.++|...++++++.. +.....+..++.+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988752 2223467788999999999999999999887644
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2.8e-05 Score=71.25 Aligned_cols=409 Identities=12% Similarity=0.049 Sum_probs=207.6
Q ss_pred ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHH-HHHHHH
Q 006457 74 STFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTS-MLTGYV 152 (644)
Q Consensus 74 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-li~~~~ 152 (644)
--+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|-...++..|...++++....|...-|.. -...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 335555555555556666666655554433 223444455555666666666666666666554333333322 123445
Q ss_pred hCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHH--hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHH
Q 006457 153 QNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSA--CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLI 230 (644)
Q Consensus 153 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 230 (644)
+.+.+.+|+.+...|. .. |+-..-..-+.+ .-..+++-.++.+.++... ..+..+.+...
T Consensus 90 ~A~i~ADALrV~~~~~------------D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~g 151 (459)
T KOG4340|consen 90 KACIYADALRVAFLLL------------DN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLG 151 (459)
T ss_pred HhcccHHHHHHHHHhc------------CC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccch
Confidence 5666777777776664 11 111111111111 1233455555555444321 12344444455
Q ss_pred HHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhh----HHHHHHHHHc
Q 006457 231 DAYARGGHVDVSRKVFDGMIE----KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVT----LSAVLLAIAH 302 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t----~~~ll~a~~~ 302 (644)
....+.|+++.|.+-|+...+ .....||..+. ..+.|+++.|++...++. ..|++..+.. -.-.+.+ ..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIi-eRG~r~HPElgIGm~tegiDv-rs 228 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEII-ERGIRQHPELGIGMTTEGIDV-RS 228 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHH-HhhhhcCCccCccceeccCch-hc
Confidence 555677777777777776643 24556665443 345567777777777776 5554321110 0000000 00
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-----NVRSWTAMIAGYGMHCRAREALD 377 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 377 (644)
.|+ ...++...+ +..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+
T Consensus 229 vgN---t~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~ 297 (459)
T KOG4340|consen 229 VGN---TLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFE 297 (459)
T ss_pred ccc---hHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHH
Confidence 000 001111000 122333344567889999999999999853 667765553222 2344555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHh-hcCCHHHHHHHHHhCCC
Q 006457 378 LFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI-EPGVEHYGCMVDLLG-RAGKLKEAYDLIEGMKV 455 (644)
Q Consensus 378 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 455 (644)
-+.-+.+.+ +-...||..++-.||+..-++.|-.++.+-.. ... -.+...|+ |++++. ..-..++|.+-+..+..
T Consensus 298 KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 298 KLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 555555542 23567999999999999988888887764311 011 11233343 344443 34567777766655410
Q ss_pred CCCHHHHHHHHHHH-HhcCChh----HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 456 KADFVVWGSLLGAC-RIHKNVD----LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 456 ~p~~~~~~~ll~~~-~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.--...-..-+..- .++.+-+ .+.+-+++.+++. ......-++.|.+..++..+.+.|..-.+
T Consensus 375 ~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 375 MLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000001111111 1222222 2333344444432 12455667889999999999999987654
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=7.4e-05 Score=69.98 Aligned_cols=287 Identities=12% Similarity=0.145 Sum_probs=159.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHH---HHHHHCCChhHHHHHHHHhHHcCCCCCChhhH-HHHHHHHHccc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIEKDAVTWNSII---AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTL-SAVLLAIAHLG 304 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~-~~ll~a~~~~~ 304 (644)
|...+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.-+.... ..+||-..- ..-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHHHHhchhhhhcc
Confidence 444555566666666666666665555554443 35666666666666565555 345553221 11122345566
Q ss_pred cHHHHHHHHHHHHHhCCCCc--hhH------------HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEES--VIV------------GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYG 367 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 367 (644)
.++.|..=|+.++++..... ... ....+..+...|+...|......+.+ -|...|..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 66666666666665432111 001 11122234445666666666665553 25555666666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH----HHHH---------H
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH----YGCM---------V 434 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---------i 434 (644)
..|++..|+.=++..-+.. .-+..++--+-..+-..|+.+.++...++. ..+.||-.. |..| +
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC---LKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC---LKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH---HccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 7777777766655554432 223334444444555566666666555554 235555321 1111 1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKADF--V---VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p~~--~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
....+.++|-++++-.++. +..|.. + .+..+-.++...+++.+|++...++++++|++..++.--+.+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 1223445565555555443 344431 1 233344556677788888888888888888888888888888888888
Q ss_pred chHHHHHHHHHhhC
Q 006457 509 WEDVERTRSLMKNR 522 (644)
Q Consensus 509 ~~~a~~~~~~m~~~ 522 (644)
|++|+.-++...+.
T Consensus 357 YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 357 YDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888877776653
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.00014 Score=75.69 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=19.7
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
.....++..|.++|.|..|.+-|.+.
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhh
Confidence 35667888999999988887766543
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=5.9e-06 Score=78.35 Aligned_cols=178 Identities=10% Similarity=-0.022 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-V---RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY----ITF 394 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 394 (644)
...+..+...|.+.|++++|...|+++.. |+ . ..|..+..+|.+.|++++|+..++++.+. .|+. .++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 44455566666777777777777766553 22 1 34566666777777777777777777653 2221 133
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006457 395 VSVLSACSHA--------GLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSL 465 (644)
Q Consensus 395 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 465 (644)
..+..++... |+.++|.+.|+.+... .|+. ..+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3333444433 5566666666666442 2332 122111111 0000000 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788999999999999999987765 468899999999999999999999988754
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=9.3e-08 Score=58.47 Aligned_cols=33 Identities=42% Similarity=0.668 Sum_probs=26.1
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 006457 218 GFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI 250 (644)
Q Consensus 218 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 250 (644)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887773
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=6.6e-05 Score=78.01 Aligned_cols=403 Identities=11% Similarity=0.040 Sum_probs=214.5
Q ss_pred HHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHC-C-------C-CCCcccHHHHHHHHhc
Q 006457 15 NVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL-S-------L-TPTRSTFPCAIKSCSA 85 (644)
Q Consensus 15 ~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-------~-~p~~~~~~~ll~~~~~ 85 (644)
.|.--|+.+.|.+-..-+... ..|..|.+.|.+..+.+-|.-.+..|... | . .|+ .+=..+.-....
T Consensus 737 fyvtiG~MD~AfksI~~IkS~---~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD---SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh---HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 366678888888877776654 57999999999999988888877777531 1 1 222 222222223356
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHH
Q 006457 86 LHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFK 165 (644)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 165 (644)
.|.+++|+.++.+-.+.. .|=..|-..|.+++|.++-+.-... .-..||..-...+-..++.+.|++.|+
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi-HLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI-HLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce-ehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 788999999999887743 3445677789999999887643221 123355555556666788899998888
Q ss_pred HhHhhhhcc-------CCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 006457 166 EFLLEESEC-------GGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH 238 (644)
Q Consensus 166 ~m~~~~~~~-------~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 238 (644)
+-..+..+. +.+-...-.-+-|...|.---.-....|+.+.|..++..+. -|-+++...|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccC
Confidence 642000000 00000000000011111111111122233333333333222 12334444444555
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHcccc-------------
Q 006457 239 VDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV------------- 305 (644)
Q Consensus 239 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~------------- 305 (644)
.++|-++-++- .|..+...+...|-..|++.+|...|.+.+ +|...|+.|-..+.
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq----------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ----------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 55555554432 245555667777888888888888877765 33344443322221
Q ss_pred --HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------CChhhHHHHHHHHHhc
Q 006457 306 --LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--------------KNVRSWTAMIAGYGMH 369 (644)
Q Consensus 306 --~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~ 369 (644)
.-.|-.+|++. |. -..-.+-.|-|.|.+.+|+++--+-.+ .|....+--..-+..+
T Consensus 1022 ~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred hhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 11222222221 11 112234456677777776654322211 2444555555666677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 445 (644)
.++++|..++-..++ |...+..|...| +.-..++-+.|.....-.|+ ......+.+.|.++|.+..
T Consensus 1094 ~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 777777777665543 233444444332 22233333333221112232 3456677788888998888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (644)
|-+-|.+.+.+- .-+.++.+.||.+
T Consensus 1164 AtKKfTQAGdKl------~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1164 ATKKFTQAGDKL------SAMRALLKSGDTQ 1188 (1416)
T ss_pred HHHHHhhhhhHH------HHHHHHHhcCCcc
Confidence 888888776331 2334455556544
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.2e-07 Score=58.01 Aligned_cols=33 Identities=42% Similarity=0.694 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK 352 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (644)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667788888888888888888888888887774
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.55 E-value=9.3e-05 Score=78.72 Aligned_cols=462 Identities=12% Similarity=0.036 Sum_probs=261.4
Q ss_pred chHHHHHHhhcCCC-CC-cchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHH
Q 006457 22 NTNLTTLFNKYVDK-NN-VFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQA 99 (644)
Q Consensus 22 ~~~A~~~f~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 99 (644)
...|...|-+..+. |+ ...|..|...|...-+...|.+.|+...+.. ..+......+.+.++...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45566655443333 11 2368888888888778888999999888754 235667778888899999999888883222
Q ss_pred HHhCC-CCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCC
Q 006457 100 FIFGF-HRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGA 177 (644)
Q Consensus 100 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 177 (644)
-+... ..-..-|-.+--.|...++...|..-|+..... +.|...|..+..+|...|++..|+++|.+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA---------- 622 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA---------- 622 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh----------
Confidence 21110 001112222334466778888888888877665 558889999999999999999999999884
Q ss_pred CCCCCCccCCHhhHHHHHHH--hhcCCCchHHHHHHHHHHHhC------CCCCccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 006457 178 SENSDNVFVDSVAIASVLSA--CSRVTVNGVTEGAHGFVIKRG------FDSEVGVGNTLIDAYARGGHVDVSRKVFDGM 249 (644)
Q Consensus 178 ~~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 249 (644)
.-+.|+.. |.....+ -+..|...++...++.++... ...-..++-.+...+.-.|-...|...|+.-
T Consensus 623 ----s~LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 623 ----SLLRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred ----HhcCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34556532 2222222 345577777777777665421 1111112222222222333333334443332
Q ss_pred CC-----------CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccH---H---HHHHH
Q 006457 250 IE-----------KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVL---R---LGKCI 312 (644)
Q Consensus 250 ~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~---~---~a~~i 312 (644)
.+ .+...|-.+ ..|..+|-+.. .. .|+......+..-.-+.+.. + .|.+.
T Consensus 698 ie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e--~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 698 IESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE--PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc--cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 11 122222222 23334444442 11 33333333222212222222 1 11111
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHh----cC----CHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 313 HDQVIKMDLEESVIVGTSIIDMYCK----CG----QVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
+-.-.+ +..+...|..|+.-|.+ +| +...|...+.... ..+..+||.|.-. ...|++.-|.--|-+
T Consensus 765 ~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIk 841 (1238)
T KOG1127|consen 765 GIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIK 841 (1238)
T ss_pred hhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhh
Confidence 111111 11223333333333322 22 2234555555443 3577788887655 555667666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 006457 382 MIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM------- 453 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~------- 453 (644)
-... .+-+..+|..+.-.|....+++.|...|...+ .+.| +...|--..-.....|+.-++..+|..-
T Consensus 842 s~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~ 917 (1238)
T KOG1127|consen 842 SRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE 917 (1238)
T ss_pred hhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc
Confidence 5553 24466778888777888888999999888873 4555 4555554444555677777787777642
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhH----------HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 454 KVKADFVVWGSLLGACRIHKNVDL----------GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 454 ~~~p~~~~~~~ll~~~~~~g~~~~----------a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
+.-|+..-|-.-..--..+|+.++ |--+.++.+.-.|+...+|...+...-+.+.+.+|.+...+.
T Consensus 918 gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 918 GKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 233455555554444455555544 334455556667888888888888888888888877766554
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=0.00019 Score=72.87 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=169.2
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH-HHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHH--
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA-VLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTS-- 330 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~-- 330 (644)
...|..+...+...|+.+.+...+....+.....++...... ....+...|+++.|..+++...+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 456667777777788888877777666523332333322222 2334467799999999999988764 334444432
Q ss_pred -HHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 331 -IIDMYCKCGQVDLARKAFNQMKEKN---VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 331 -li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
+.......|..+.+.+.+......+ ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2222223456666777666533222 2344455668889999999999999999853 3445677788889999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC--CHHHH--H--HHHHHHHhcCChhH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGV--EHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA--DFVVW--G--SLLGACRIHKNVDL 477 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~--~--~ll~~~~~~g~~~~ 477 (644)
+++|..+++.........|+. ..|..+...+...|++++|.+++++.. ..| ..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999886532222332 345678889999999999999999862 223 21111 1 23333445554444
Q ss_pred HHHH---HHHhhccCCC--CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 478 GEIA---AKKLFELEPN--NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 478 a~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+.+. ........|. ........+.++...|+.++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4433 2221111122 12223356677889999999999999987543
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=1e-05 Score=88.49 Aligned_cols=200 Identities=13% Similarity=0.118 Sum_probs=164.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 322 EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK--------NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 322 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
+.+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 455667777888888899999999999887641 2457888888888888888889999999873 223456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD---FVVWGSLLGAC 469 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 469 (644)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999998766 66788999999999999999999998875 33332 33445555666
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
.++||.+.+..+|+.++...|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999887764
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=5.4e-06 Score=75.41 Aligned_cols=118 Identities=8% Similarity=0.001 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hhHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGAC-RIHKN--VDLG 478 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 478 (644)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566667666666644 23446778888888888888888888888876 3445 555676776654 56666 5899
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987654
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.49 E-value=0.0002 Score=67.14 Aligned_cols=328 Identities=12% Similarity=0.075 Sum_probs=189.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHH---HhhcCCCchHHHHHHHHHHHhCCCCC
Q 006457 146 SMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLS---ACSRVTVNGVTEGAHGFVIKRGFDSE 222 (644)
Q Consensus 146 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~ 222 (644)
-+...+...|++.+|+.-|.... ..|+..|.++.+ .|...|....|..=+..+++. +||
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAv----------------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpD 104 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAV----------------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPD 104 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH----------------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--Ccc
Confidence 34566777888888888887754 334444444433 355556555555555555443 455
Q ss_pred ccHH-HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 223 VGVG-NTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 223 ~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
-..- ---...+.+.|.++.|..-|+.+.+.++.- +....++.+.-..++-+ .....+..+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~-----------------~l~~ql~s~~ 166 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW-----------------VLVQQLKSAS 166 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH-----------------HHHHHHHHHh
Confidence 3221 112345667777888777777764432200 00001111100011111 1122233334
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRSWTAMIAGYGMHCRAREALDL 378 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 378 (644)
..|+...+......+++.. +.|...+..-..+|...|++..|..=+.... ..|....--+-..+...|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 4566666666666666643 4566666666777777777777765544333 34555555566666677777777777
Q ss_pred HHHHHHcCCCCCHHH----HHHH---------HHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhc
Q 006457 379 FYKMIKAGVRPNYIT----FVSV---------LSACSHAGLVQEGWHWLNTMGHEFNIEPG-----VEHYGCMVDLLGRA 440 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t----~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~ 440 (644)
.++-++ +.||... |-.| +......+.+.++.+-.+...+ ..|. ...+..+-..+...
T Consensus 246 iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 246 IRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeeccccc
Confidence 666665 4565432 1111 1122345566666666666543 2343 22344455667778
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 441 GKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 441 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
|++.+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|++..+-..+ +.|.++.++
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Akrlkkq 390 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAKRLKKQ 390 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHH
Confidence 8999999887765 55665 66777777888888899999999999999999886544433 566666666
Q ss_pred HhhCCCc
Q 006457 519 MKNRRLA 525 (644)
Q Consensus 519 m~~~~~~ 525 (644)
..++..-
T Consensus 391 s~kRDYY 397 (504)
T KOG0624|consen 391 SGKRDYY 397 (504)
T ss_pred hccchHH
Confidence 6555443
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=4.6e-06 Score=71.70 Aligned_cols=121 Identities=9% Similarity=-0.005 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 006457 377 DLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-K 454 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 454 (644)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555554 34553 44566677788888888888888743 344 5777788888888888888888888876 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 455 VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 455 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
..| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334 56678888888888888888888888888888888888877766543
No 112
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=6.7e-05 Score=73.41 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRA--REALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
+++++..++++.+ ++..+|+.....+.+.|+. ++++++++++.+.. +-|...|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555544432 2333444443333333432 45566666665532 2245556555556666666666666666
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHHH
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRA---GK----LKEAYDLIEG-MKVKA-DFVVWGSLLGACRIH----KNVDLGEIAA 482 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~ 482 (644)
.+++. -.-+...|+.....+.+. |. .+++.++..+ +...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66442 122344444444333332 22 2345555533 34444 566888888888774 3456688888
Q ss_pred HHhhccCCCCchhHHHHHHHHhhc
Q 006457 483 KKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.++...+|.++.+...|+++|+..
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhh
Confidence 998888999999999999999864
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=4.5e-06 Score=70.44 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
+....-.+...+...|++++|..+|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556677788899999999999976 3445 5668889999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 504 ANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
...|+.+.|++.|+...... ..+|+..++.+++......+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999887532 236777777777776666554
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.37 E-value=0.0037 Score=62.63 Aligned_cols=435 Identities=12% Similarity=0.133 Sum_probs=213.6
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.|..+|+.|+.-+..+ ..++++..++++... | ....|..-|.......+++....+|.+....- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 45678999999988888 899999999988643 3 45679999999999999999999999987643 3455566555
Q ss_pred HHHhcc-CCcHHH----HHHHHHHH-HhCCCCC-hhHHHHHHHHH---------HhCCChHHHHHHHhhCCCCCC-Ce-e
Q 006457 81 KSCSAL-HDLHSG----KQAHQQAF-IFGFHRD-VFVSSALIDMY---------SKCGELSDARKLFDEIPQRIR-NI-V 142 (644)
Q Consensus 81 ~~~~~~-~~~~~a----~~~~~~~~-~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~~~-~~-~ 142 (644)
.--.+. ++.... .+.|+..+ +.|+++- -..|+..+..+ ....+++...++++++...+- |. .
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 544332 333322 23344433 3465443 33566655433 334466777888888766411 11 1
Q ss_pred cHHH------HHHH-----HH--hCCChhHHHHHHHHhHhhhh--ccCCCCCCCCCccCCHhh---HHHHHHHhhcCCCc
Q 006457 143 SWTS------MLTG-----YV--QNDNAREALLLFKEFLLEES--ECGGASENSDNVFVDSVA---IASVLSACSRVTVN 204 (644)
Q Consensus 143 ~~~~------li~~-----~~--~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~~~~p~~~t---~~~ll~~~~~~~~~ 204 (644)
.|+- =|+. +. +...+-.|.++++++..... ....+..+..|.+..... +-..|.. -+.+.+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCc
Confidence 1221 1111 11 12344567777776653211 000000000110000000 1111211 111111
Q ss_pred h------HHH---HHHHHH-HHhCCCCCccHH-H----HHHHHHHhcCCH-------HHHHHHHhcCCCC----CHhHHH
Q 006457 205 G------VTE---GAHGFV-IKRGFDSEVGVG-N----TLIDAYARGGHV-------DVSRKVFDGMIEK----DAVTWN 258 (644)
Q Consensus 205 ~------~a~---~~~~~~-~~~g~~~~~~~~-~----~li~~~~~~g~~-------~~A~~~~~~~~~~----~~~~~~ 258 (644)
. ... -++++. .-.++.|++... . ..-+.+...|+. +++..+++...+. +...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 011 111111 112333332211 0 111122333332 3344444433221 222222
Q ss_pred HHHHHHH---HCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHH
Q 006457 259 SIIAIYA---QNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE-SVIVGTSIIDM 334 (644)
Q Consensus 259 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~ 334 (644)
.+..--- .....+...+.+.+........|+ .+|...++...+..-++.|+.+|.++.+.+..+ ++.++++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 2221100 001234444555555422233333 345566666666666777777777776665554 66666666665
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHH
Q 006457 335 YCKCGQVDLARKAFNQMKE--KNVRS-WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY--ITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 409 (644)
|| .++.+-|.++|+.-.+ +|... -+..+.-+...++-..|..+|++....++.||. ..|..+|.--+.-|++..
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 54 4566666666665432 23322 234445555556666666666666666555543 356666666666666666
Q ss_pred HHHHHHHHhhhcC--CCCChhHHHHHHHHHhhcCCH
Q 006457 410 GWHWLNTMGHEFN--IEPGVEHYGCMVDLLGRAGKL 443 (644)
Q Consensus 410 a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~ 443 (644)
+.++-+++...+. ..+...+-..+++.|.-.+..
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 6666555543322 223333334445555444433
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=3.5e-05 Score=69.91 Aligned_cols=135 Identities=18% Similarity=0.112 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWGS 464 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 464 (644)
..|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...|++. +.++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355433335566677777887777777766522 23345566667888888999999999988887 34567888888
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+..+|.+.|+.+.|...+.+++++.|+++.+...|+-.|.-.|+.+.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999988999999999998888776543
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=9.5e-06 Score=69.75 Aligned_cols=107 Identities=8% Similarity=-0.074 Sum_probs=91.1
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455542 34455 3556788899999999999999986 3444 67799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 490 PNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 490 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|+++..+..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=9e-05 Score=67.45 Aligned_cols=157 Identities=10% Similarity=0.119 Sum_probs=118.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006457 331 IIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEG 410 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 410 (644)
-+-.|.+.|+++.+..-.+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888887755544433221 01223567788888888887753 55778899999999999999999
Q ss_pred HHHHHHHhhhcCCCC-ChhHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 411 WHWLNTMGHEFNIEP-GVEHYGCMVDL-LGRAGK--LKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
...|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998854 445 57788888886 467787 59999999987 4455 566888888999999999999999999
Q ss_pred hhccCCCCchhHHHH
Q 006457 485 LFELEPNNCGYHVLL 499 (644)
Q Consensus 485 ~~~~~p~~~~~~~~l 499 (644)
++++.|.+..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999998765544333
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=6.9e-05 Score=80.91 Aligned_cols=138 Identities=7% Similarity=-0.032 Sum_probs=111.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGC 432 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 432 (644)
++..+-.|.....+.|++++|+.+++...+ +.||. .....+...+.+.+.+++|...+++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 467788888888999999999999999988 56765 4667778888999999999999998844 455 4677788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK-VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
+..++.+.|++++|.++|++.- -.|+ ..+|.++..++...|+.++|..+|+++++...+-...|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 8888999999999999999873 3343 678888999999999999999999999987644434433
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00011 Score=75.83 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=137.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
+++|--..-..+...+..+|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555556667888889999999999999875 4677788899999998899888888777 4788888888888
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDL 477 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 477 (644)
..-+...+++|+++++..... .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777888888888766332 1111222223467777777777643 4433 34477777777777777777
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
|.+.|.....++|++...+..++.+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777776655
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.00023 Score=78.52 Aligned_cols=197 Identities=13% Similarity=0.151 Sum_probs=94.5
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHh-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhhHHHHHHH
Q 006457 292 TLSAVLLAIAHLGVLRLGKCIHDQVIKM-DLE---ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-N-VRSWTAMIAG 365 (644)
Q Consensus 292 t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~ 365 (644)
.|-..+.-....++.+.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+- | ...|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3333444444444555555555444431 111 11224444444444445555555555555431 2 2345555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
|.+.+..++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+...-.-......-.+++-.+.|+.+.
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence 55555555555555555543 23334455555555555555555555555553311000123333344445555566666
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 446 AYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 446 A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+..+|+.. ..+.....|+..+..-.+||+.+.++.+|++++++.
T Consensus 1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 55555544 111133456666666666666666666666665543
No 121
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=6.3e-05 Score=75.56 Aligned_cols=242 Identities=11% Similarity=0.047 Sum_probs=165.0
Q ss_pred HHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006457 263 IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 263 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 342 (644)
-+.++|+..+|.-.|+..+ .. -+-+...|..|....+..++-..|...+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAV-kq-dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAV-KQ-DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHH-hh-ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3567777777777777776 22 23355667777777777777777777777777754 445666667777788888777
Q ss_pred HHHHHHHhcCC--C----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 343 LARKAFNQMKE--K----------NVRSWTAMIAGYGMHCRAREALDLFYKMI-KAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 343 ~A~~~~~~~~~--~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
.|.+.|+.-.. | +...-+. ..+..........++|-++. +.+..+|+.....|.--|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 78777765421 0 1000000 11122222345556666555 44534566666666666788899999
Q ss_pred HHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 410 GWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFV-VWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
|...|+.+. .++| |..+||.|...++...+.++|+..|+++ .++|+-+ ++..|.-+|...|.+++|...+-.++
T Consensus 449 aiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999994 4677 5788999999999999999999999987 6888755 78889999999999999999999988
Q ss_pred ccCCCC----------chhHHHHHHHHhhcCCchHH
Q 006457 487 ELEPNN----------CGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 487 ~~~p~~----------~~~~~~l~~~~~~~g~~~~a 512 (644)
.+.+.+ ..++..|-.++.-.++.|-+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 875441 13555555555555555533
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00022 Score=73.73 Aligned_cols=215 Identities=10% Similarity=0.093 Sum_probs=170.3
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHH
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLA 299 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 299 (644)
+|--..-..+...+.+.|-...|..+|++ ...|...|.+|...|+..+|..+..+-. + -+||+..|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhh
Confidence 34444556788899999999999999988 4678889999999999999999988876 3 68899999999988
Q ss_pred HHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHH
Q 006457 300 IAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREAL 376 (644)
Q Consensus 300 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 376 (644)
.....-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888888888888765432 1111222223368899999999865543 3568888888899999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 377 DLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+ ++ .-+...|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99998876 46754 5899999999999999999999999866 45 445556666777788999999999998877
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=0.0001 Score=69.88 Aligned_cols=181 Identities=16% Similarity=0.030 Sum_probs=123.9
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh---hHH
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE-E-SVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VR---SWT 360 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 360 (644)
....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777778888999999999999999875421 1 124567788999999999999999999864 32 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHH
Q 006457 361 AMIAGYGMH--------CRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYG 431 (644)
Q Consensus 361 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 431 (644)
.+..++.+. |+.++|.+.|+++.+. .|+.. ....+... .. .. ... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH---------HHHHH
Confidence 556666654 7889999999999875 45432 22211111 00 00 000 01122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 432 CMVDLLGRAGKLKEAYDLIEGM----KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
.+...|.+.|++++|...+++. +..| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566788889999998888776 2223 345788888899999999999988887766555
No 124
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.00053 Score=68.52 Aligned_cols=101 Identities=15% Similarity=-0.037 Sum_probs=70.2
Q ss_pred HhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHHCCChhHH
Q 006457 197 ACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--KD-AVTWNSIIAIYAQNGLAAEA 273 (644)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 273 (644)
+....|+++.|...|...+... +++...|+.-..+|++.|++++|.+=-.+-.+ |+ .-.|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4556788888888888877665 44777888888888888888888765554433 22 34677788888888888888
Q ss_pred HHHHHHhHHcCCCCCChhhHHHHHHHH
Q 006457 274 LDVFDQMVKSTDVKCNAVTLSAVLLAI 300 (644)
Q Consensus 274 ~~~~~~m~~~~~~~p~~~t~~~ll~a~ 300 (644)
+..|.+-. . ..+.|...++.+..+.
T Consensus 90 ~~ay~~GL-~-~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGL-E-KDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHh-h-cCCchHHHHHhHHHhh
Confidence 88887765 1 2233445555555554
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=2.6e-06 Score=52.95 Aligned_cols=34 Identities=32% Similarity=0.659 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (644)
.+||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00019 Score=65.31 Aligned_cols=152 Identities=11% Similarity=0.063 Sum_probs=85.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG 441 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (644)
+-..+...|+.+....+..+.... .+-|............+.|++.+|...|.+... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 344455555555555554443321 122333333455555666666666666666633 34445666666666666666
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHH
Q 006457 442 KLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTR 516 (644)
Q Consensus 442 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (644)
++++|..-|.+. .+.| +....+.|...+.-.|+.+.|+.++.......+.++..-..|+-+....|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666655544 2233 34455566666666666666666666666666656666666666666666666665543
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0022 Score=58.51 Aligned_cols=249 Identities=13% Similarity=0.032 Sum_probs=137.1
Q ss_pred HHhcCCHHHHHHHHhcC-CC-CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH-
Q 006457 233 YARGGHVDVSRKVFDGM-IE-KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG- 309 (644)
Q Consensus 233 ~~~~g~~~~A~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a- 309 (644)
|.-.|++..++..-... .. .++..-.-|-++|...|.+...+. ++. .+-.|....+..+.......++.+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~--~~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIK--EGKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccc--cccCChHHHHHHHHHHhhCcchhHHHH
Confidence 33456666655544433 22 334444445566777776543322 221 22233333333333333333333322
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
..+.+.+.......+......-...|+..|++++|.+.......-+....+ +..+.+..+.+-|...+++|++- -
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 334444444444444444444455678888888888888774333333333 23345566778888888888762 3
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 006457 390 NYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWG 463 (644)
Q Consensus 390 ~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 463 (644)
+..|.+.|..++.+ .+.+.+|.-+|++|.. ...|+..+.+-+..++...|++++|..+++.. +...++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 56677766666543 3457777778887743 35677777777777777777777777777765 2222444444
Q ss_pred HHHHHHHhc-CChhHHHHHHHHhhccCCCCc
Q 006457 464 SLLGACRIH-KNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 464 ~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 493 (644)
.++..-... .+.+.-.+...++....|..+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 444333333 344455566666666666643
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.019 Score=61.32 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 461 VWGSLLGACRIHKNVD---LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
+-+.|+..+++.++.. +|+-+++..+...|.|..+-..|+.+|.-.|-...|.++++.+.-+.+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 4466777777777654 5666777777788888888888888888888888888888887655554
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=0.00057 Score=74.76 Aligned_cols=147 Identities=11% Similarity=0.065 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.+..|..+|-+.|+.++|.++++++.+ .|....|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555556666666666555543 2444555555555555 555555555555432 333
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (644)
..++..+.+++..+.. ..|+ ...+-.+..... ...+..--+.++--+-..|...++++.+..++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~------------~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVL------------GHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHH------------hhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3445555555555533 1121 211111111111 11111112334444445566666677777777
Q ss_pred HHhhccCCCCchhHHHHHHHHh
Q 006457 483 KKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7777777766666666666554
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00095 Score=66.16 Aligned_cols=118 Identities=17% Similarity=0.064 Sum_probs=77.7
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 478 (644)
....|.+++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3455677777777777654 23334555566667777777777777777765 34454 45666666777777777777
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..++.....+|+++..|..|+.+|...|+..+|...+.++-
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 777777777777777777777777777776666666555543
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.1e-06 Score=52.07 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=31.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCc
Q 006457 39 FSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTR 73 (644)
Q Consensus 39 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 73 (644)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
No 132
>PLN02789 farnesyltranstransferase
Probab=98.09 E-value=0.00058 Score=66.90 Aligned_cols=183 Identities=10% Similarity=0.049 Sum_probs=132.7
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH--H
Q 006457 335 YCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHC-RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLV--Q 408 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~--~ 408 (644)
+...++.++|..+.+++.+. +..+|+.-...+...| ++++++..++++.+.. +-+..+|..-...+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 44556788888888877643 4456776666677777 5799999999999864 33455666555555566653 6
Q ss_pred HHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCh----hHH
Q 006457 409 EGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVK-ADFVVWGSLLGACRIH---KNV----DLG 478 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~----~~a 478 (644)
++..+++.+.. +.| +..+|+...-++.+.|++++|++.++++ ... -|...|+.....+... |.. +..
T Consensus 126 ~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 77888888854 344 5788888888999999999999999987 322 3667888777666544 222 467
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhc----CCchHHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANA----GRWEDVERTRSLMKN 521 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 521 (644)
.....++++++|++.+++..+..++... ++..+|.+......+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7788899999999999999999999873 445567666655443
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.017 Score=58.22 Aligned_cols=452 Identities=12% Similarity=0.120 Sum_probs=246.6
Q ss_pred cCCCC-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh
Q 006457 32 YVDKN-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTP-TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVF 109 (644)
Q Consensus 32 ~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 109 (644)
+...| |+.+|+.||+-+-.. ..+++.+.++++.. +-| ....|..-|..-.+.++++....+|.+.+..-+. ..
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lD 87 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LD 87 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--Hh
Confidence 44444 889999999987555 99999999999986 445 4556777788888999999999999999876544 44
Q ss_pred HHHHHHHHHHh-CCChHH----HHHHHhhCCCC----CCCeecHHHHHHH---------HHhCCChhHHHHHHHHhHhhh
Q 006457 110 VSSALIDMYSK-CGELSD----ARKLFDEIPQR----IRNIVSWTSMLTG---------YVQNDNAREALLLFKEFLLEE 171 (644)
Q Consensus 110 ~~~~li~~~~~-~g~~~~----A~~~~~~~~~~----~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~ 171 (644)
.|..-+..--+ .|+... ..+.|+-.... ..+-..|+..+.- |..+.+++...++|+++.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral--- 164 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL--- 164 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh---
Confidence 55555543322 233322 12222221111 1344456665542 334446666777777776
Q ss_pred hccCCCCCCCCCcc------CCHhhHHHHHHH-------hhcCCCchHHHHHHHHHHH--hCCCCCccHHHHHHHHHHhc
Q 006457 172 SECGGASENSDNVF------VDSVAIASVLSA-------CSRVTVNGVTEGAHGFVIK--RGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 172 ~~~~~~~~~~~~~~------p~~~t~~~ll~~-------~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~ 236 (644)
...+. -|-.+|-.-+.. --++..+..|++++.++.. .|+.....+ .-..
T Consensus 165 ---------~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~ 228 (656)
T KOG1914|consen 165 ---------VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPK 228 (656)
T ss_pred ---------cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCC
Confidence 11111 011111111110 0111223333333333321 121111100 0000
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCCh--------hHHHHHHHHhHHcCCCCCChhh-HHHHH----HHHHcc
Q 006457 237 GHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLA--------AEALDVFDQMVKSTDVKCNAVT-LSAVL----LAIAHL 303 (644)
Q Consensus 237 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~~p~~~t-~~~ll----~a~~~~ 303 (644)
|--++.. -+..|-.+|..=-.++.- ....-.+++...-.+..|+..- +...+ +.+...
T Consensus 229 ~T~~e~~---------qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~ 299 (656)
T KOG1914|consen 229 GTKDEIQ---------QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEK 299 (656)
T ss_pred CChHHHH---------HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHh
Confidence 0000000 011233333221111110 0111112221112233333211 11111 112222
Q ss_pred cc-------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---C-ChhhHHHHHHHHHhc
Q 006457 304 GV-------LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG---QVDLARKAFNQMKE---K-NVRSWTAMIAGYGMH 369 (644)
Q Consensus 304 ~~-------~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 369 (644)
|+ .+++..+++..+..-...+..+|..+.+---..- ..+.....+++... . -..+|-..+..-.+.
T Consensus 300 ~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~ 379 (656)
T KOG1914|consen 300 GDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA 379 (656)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh
Confidence 33 3455566666555433334444444433211111 24444455555442 1 234677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
.-.+.|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+.=.+.+| -+..--...++-+...++-..|..
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHH
Confidence 77889999999999998888 6667777777665 5788999999998766543 344455678888999999999999
Q ss_pred HHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC----chhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 449 LIEGMK---VKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN----CGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 449 ~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
+|++.- ..|| ...|..+|.--..-||...+.++-++.....|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999872 2333 4699999999999999999999988887765521 123345556677777666555555544
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=4.7e-05 Score=64.99 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=76.1
Q ss_pred CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHH
Q 006457 423 IEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 423 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
..| +......+...+...|++++|.+.|+.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3445566677777788888888888775 3333 556777777888888888888888888888888888888888
Q ss_pred HHHHhhcCCchHHHHHHHHHhhC
Q 006457 500 SNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877654
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.0007 Score=67.08 Aligned_cols=144 Identities=19% Similarity=0.105 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVD 435 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 435 (644)
.+.-..-.+...|++++|+..++.+... .||. .........+...++.++|.+.++.+.. ..|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3333444556678999999999998875 5654 4455556678899999999999999954 5676 666777889
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++..+. +..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 999999999999999887 23447889999999999999988776654 45678899999999
Q ss_pred HHHHHHhhCC
Q 006457 514 RTRSLMKNRR 523 (644)
Q Consensus 514 ~~~~~m~~~~ 523 (644)
.......++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999888764
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8.6e-06 Score=50.17 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.04 E-value=0.00067 Score=73.45 Aligned_cols=143 Identities=8% Similarity=0.039 Sum_probs=116.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY-ITFV 395 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 395 (644)
.++.++..+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3566788888899999999999999999999874 5 4567888899999999999999999999985 5654 4556
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWGSLL 466 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 466 (644)
.+..++.+.|.+++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 666788899999999999999965 22334788999999999999999999999987 2334444555444
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00014 Score=72.68 Aligned_cols=123 Identities=18% Similarity=0.119 Sum_probs=99.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
...+|+..+...+.++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456677777788889999999988553 354 4445777777788888888888776 3333 5566666667888
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
..++++.|+.+++++.++.|++..+|..|+.+|.+.|++++|+-.+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998876
No 139
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.0061 Score=59.63 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQ 408 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 408 (644)
+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-..+... +-.++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556677777777777777777777777778888887777765554321 123366777777777777777
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 409 EGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777776653 1134566777777777777665544
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00021 Score=71.36 Aligned_cols=127 Identities=9% Similarity=0.085 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
...+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++..+.. +-|...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667778899999999999988777677778888888888899999999988652 3356666666677889999
Q ss_pred HHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 006457 407 VQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA 457 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 457 (644)
++.|+.+.+++.. ..|+ ..+|..|...|.+.|++++|+..++.+|+.|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999854 5564 6699999999999999999999999997554
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=7.4e-06 Score=50.48 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCC
Q 006457 38 VFSWNSVIADLARGGDSVEALRAFSSMRKLSLTP 71 (644)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 71 (644)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00025 Score=60.47 Aligned_cols=114 Identities=9% Similarity=-0.026 Sum_probs=84.3
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 006457 378 LFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV 455 (644)
Q Consensus 378 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 455 (644)
.|++... ..|+ ......+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 3443 344556667778888888888888887542 2336777888888888889999998888876 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 456 KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 456 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 46677777888889999999999999999999887553
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0033 Score=56.97 Aligned_cols=167 Identities=15% Similarity=0.158 Sum_probs=115.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMI---AGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
-++-+...+|+.+.|...++.+..+=..++.... .-+-..|++++|+++++...+.. +.|.+++.-=+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 3444555677777777777776542222221111 12445688999999999998865 5566777666666666777
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHHHH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRI---HKNVDLGEIA 481 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~ 481 (644)
.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| ++..+..+...+.. ..|.+.+...
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788887777755 46778999999999999999999999999987 2445 44444455544433 3478899999
Q ss_pred HHHhhccCCCCchhHHHH
Q 006457 482 AKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l 499 (644)
+.+++++.|.+...+..+
T Consensus 214 y~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHhChHhHHHHHHH
Confidence 999999999765555444
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.82 E-value=0.0013 Score=72.03 Aligned_cols=217 Identities=9% Similarity=0.067 Sum_probs=116.3
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHhhcCC-CCCcc-hHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCc------
Q 006457 2 KLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVD-KNNVF-SWNSVIADLARGGDSVEALRAFSSMRKLSLTPTR------ 73 (644)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------ 73 (644)
.+++...+-.|++.|.+.+++++|.++.+.... .|+.. .|-.+...+.+.++..++..+ .+... +..+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 356777888899999899999999988875432 23332 233333355666666665555 22221 11111
Q ss_pred -------------ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCC
Q 006457 74 -------------STFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRN 140 (644)
Q Consensus 74 -------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 140 (644)
..+-.+..+|-+.|+.+++.++++.+++.. +-++.+.|.+...|+.. ++++|..++.+...
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~---- 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY---- 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH----
Confidence 233333334444444555555555554443 33444444444444444 44555444444332
Q ss_pred eecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHh-CC
Q 006457 141 IVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKR-GF 219 (644)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~ 219 (644)
.|...+++.++.+++.++.. ..| .+.+.-.++.+.+..+ |.
T Consensus 178 ---------~~i~~kq~~~~~e~W~k~~~--------------~~~---------------~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 178 ---------RFIKKKQYVGIEEIWSKLVH--------------YNS---------------DDFDFFLRIERKVLGHREF 219 (906)
T ss_pred ---------HHHhhhcchHHHHHHHHHHh--------------cCc---------------ccchHHHHHHHHHHhhhcc
Confidence 23344444444444444431 011 1222333333333332 33
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYA 265 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 265 (644)
..-+.++-.|-..|-+..+++++..+|..+.+ .|..+..-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44455666677888899999999999998843 36666777777776
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.8e-05 Score=46.65 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGV 387 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 387 (644)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=2.9e-05 Score=59.78 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 440 AGKLKEAYDLIEGM-KVKA---DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 440 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1122 344555567777777777777777777 666666666677778888888888888887
Q ss_pred HHH
Q 006457 516 RSL 518 (644)
Q Consensus 516 ~~~ 518 (644)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.77 E-value=0.00094 Score=57.61 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=25.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
...+...|++++|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444555544444331 11222334455555666666666666655543
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0096 Score=54.48 Aligned_cols=213 Identities=13% Similarity=0.091 Sum_probs=125.8
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHH-HHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 223 VGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEAL-DVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 223 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
+..-.-+-.+|...|.+.....-...-..+.......+......-++.++-+ ++.+.+. ......+......-...|.
T Consensus 41 ~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a-~~~~~sn~i~~l~aa~i~~ 119 (299)
T KOG3081|consen 41 VELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVA-DSTDGSNLIDLLLAAIIYM 119 (299)
T ss_pred hHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHH-hhccchhHHHHHHhhHHhh
Confidence 3333444556666666543332222222222333322222222233333333 3444444 4444444444444555678
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHh----cCCHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN-VRSWTAMIAGYGM----HCRAREAL 376 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~ 376 (644)
+.+++++|.+...... ...... .=+..+.|..+++-|.+.++.|.+-| -.+.+.|..++.+ .+...+|.
T Consensus 120 ~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred cCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHH
Confidence 8888888887776521 122222 22344567778899999999888753 4456656665543 34678899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 377 DLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 377 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
-+|++|-+. ..|+..+.+....++...|++++|..+++....+ -..++.+...+|-.-.-.|...+
T Consensus 194 yifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 194 YIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChH
Confidence 999999764 6889999999999999999999999999888653 23345555555555445555444
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00025 Score=55.70 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (644)
+..+...+...|++++|...+++. ...| +...|..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888765 3333 33567777777788888888888888888888888788888888888889
Q ss_pred CchHHHHHHHHHhh
Q 006457 508 RWEDVERTRSLMKN 521 (644)
Q Consensus 508 ~~~~a~~~~~~m~~ 521 (644)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.3e-05 Score=45.78 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=25.1
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhhHCCC
Q 006457 39 FSWNSVIADLARGGDSVEALRAFSSMRKLSL 69 (644)
Q Consensus 39 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 69 (644)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=8.2e-05 Score=54.73 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC-CchHHHHHHHHHhh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG-RWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 521 (644)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988764
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0014 Score=56.52 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=38.6
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLLGRAGKLKEAYDLIEGMKVK-ADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~ 475 (644)
..+...|++++|...|+.+... ...|. ....-.|...+...|++++|+..++..+.. .....+......+...|+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH
Confidence 3444455555555555555432 11111 112223444455555555555555443211 1223344444555555555
Q ss_pred hHHHHHHHHh
Q 006457 476 DLGEIAAKKL 485 (644)
Q Consensus 476 ~~a~~~~~~~ 485 (644)
++|...|+++
T Consensus 135 ~~A~~~y~~A 144 (145)
T PF09976_consen 135 DEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.00047 Score=57.10 Aligned_cols=92 Identities=15% Similarity=-0.006 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHH
Q 006457 431 GCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNI 502 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 502 (644)
-.++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444555555555555444 11121 1233344455555555555555555555555443 2345555555
Q ss_pred HhhcCCchHHHHHHHHHhhC
Q 006457 503 YANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 503 ~~~~g~~~~a~~~~~~m~~~ 522 (644)
+.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.00067 Score=68.15 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.3
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 475 (644)
......|++++|+..|+.+++ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 344455666666666666643 223 3455555566666666666666666554 2333 344555555666666666
Q ss_pred hHHHHHHHHhhccCCCCchhHHHHH
Q 006457 476 DLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
++|+..++++++++|+++.....+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6666666666666666655544443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.00099 Score=55.14 Aligned_cols=102 Identities=8% Similarity=-0.009 Sum_probs=61.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLG 467 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 467 (644)
+..+...+...|++++|...|..+.....-.| ....+..+...+.+.|++++|.+.|+.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555566666666666666644211111 1234455666666777777777776655 22232 345666667
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
++...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777788888888888888887776543
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.00017 Score=52.30 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778888999999999999999998889999999999999999999988888653
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0066 Score=55.06 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSV-LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLL 437 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (644)
|..++-+....|+.+.|...++++.+. + |.+.-...+ ..-+-..|.+++|.++++....+ -+.|..++.-=+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444555667788999999999998876 3 544322211 12245578999999999999764 244677777777777
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC---CchHH
Q 006457 438 GRAGKLKEAYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG---RWEDV 512 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 512 (644)
-..|+--+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++-+.|.++..+..++..+...| +++-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888888777665 355699999999999999999999999999999999999999999999987766 45567
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.+++.+..+-
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 7777766653
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0031 Score=66.21 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=74.6
Q ss_pred CCChhhHHHHHHHHHh--cC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHh
Q 006457 353 EKNVRSWTAMIAGYGM--HC---RAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHA--------GLVQEGWHWLNTMG 418 (644)
Q Consensus 353 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 418 (644)
..|...|...+.+... .+ ....|..+|++..+ ..|+. ..+..+..++... ..+..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777776433 22 36688888888888 46664 3343333222111 11222222222221
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 419 HEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 419 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
.......+...|.++.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10012223455555555555556666666666655 34556556666666666666666666666666666666553
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.57 E-value=0.099 Score=51.77 Aligned_cols=255 Identities=10% Similarity=0.054 Sum_probs=138.6
Q ss_pred HHHhcCCchHHHHHHhhcCCC----C----CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh--
Q 006457 15 NVDKHSTNTNLTTLFNKYVDK----N----NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS-- 84 (644)
Q Consensus 15 ~~~~~~~~~~A~~~f~~~~~~----p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 84 (644)
.+.+++++.+|.++|.++-.. | ..+.-+.+|++|..+ +.+.....+....+. .| ...|-.+..++.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 356789999999999988542 1 123456788888765 455555555556553 23 455666666543
Q ss_pred ccCCcHHHHHHHHHHHHh--CCC------------CChhHHHHHHHHHHhCCChHHHHHHHhhCCCC------CCCeecH
Q 006457 85 ALHDLHSGKQAHQQAFIF--GFH------------RDVFVSSALIDMYSKCGELSDARKLFDEIPQR------IRNIVSW 144 (644)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ 144 (644)
+.+.+..|.+.+..-... +.. +|-..-+..+..+...|++.+++.++++|... .-++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667888888887776654 322 23334456678888999999999998887654 3577888
Q ss_pred HHHHHHHHhC--------C-------ChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCC--CchHH
Q 006457 145 TSMLTGYVQN--------D-------NAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVT--VNGVT 207 (644)
Q Consensus 145 ~~li~~~~~~--------g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a 207 (644)
|.++-.+.+. . .++.++-..++|...+.. +...+.|....+..++....-.. .+..-
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 8755444432 1 122333333333311100 02234455444555544433221 22223
Q ss_pred HHHHHHHHHhCCCCCc-cHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCHhHHHHHHHHHHHCCChhHHHHHHH
Q 006457 208 EGAHGFVIKRGFDSEV-GVGNTLIDAYARGGHVDVSRKVFDGM--------IEKDAVTWNSIIAIYAQNGLAAEALDVFD 278 (644)
Q Consensus 208 ~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (644)
.+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++...++.++..+|-+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444433333344442 233444444444 334443333332 11233456666666666666666666555
Q ss_pred HhH
Q 006457 279 QMV 281 (644)
Q Consensus 279 ~m~ 281 (644)
-+.
T Consensus 323 lL~ 325 (549)
T PF07079_consen 323 LLK 325 (549)
T ss_pred HHH
Confidence 443
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.1 Score=51.12 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
+.+..|.-+...|+...|.++-.+..-||..-|-..|.+|+..++|++-..+... . -.++-|-.++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----C--CCCCChHHHHHHHHHCC
Confidence 4555677778889999999999999889999999999999999999887664322 1 13478889999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFN 349 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (644)
...+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 999988877662 12567889999999999877643
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00044 Score=64.66 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 424 EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRI---HKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
+-|...|--|...|.+.|+++.|..-|.+. .+.| |...+..+..++.. .....++..+++++++++|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 347899999999999999999999999876 3333 45566666555532 335668999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhCCCcCCC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNRRLAKTP 528 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 528 (644)
|+..+...|++.+|...++.|.+......|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654333
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0009 Score=62.21 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=72.2
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF-VVWGSLLGACRIHKNVDL 477 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 477 (644)
..+.+++++|+..|..++. +.| |...|.--..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456777888887777743 555 4555555677788888888887766654 455543 388888888999999999
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHH
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
|++.|+++++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999887666666444
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.13 Score=53.52 Aligned_cols=220 Identities=10% Similarity=0.035 Sum_probs=102.7
Q ss_pred hcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHC-CCCCCcccHHH----H--HHHHhccCCcH
Q 006457 18 KHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKL-SLTPTRSTFPC----A--IKSCSALHDLH 90 (644)
Q Consensus 18 ~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~----l--l~~~~~~~~~~ 90 (644)
..=.+++|.+..+.=| -+..|..+...-.+.-.++-|...|-+.... |++.-...-.. + ....+--|.++
T Consensus 675 e~vgledA~qfiEdnP---HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIEDNP---HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred HHhchHHHHHHHhcCC---chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 3345677777765543 4567888877766666677777766665432 32210000000 0 00011124555
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC---CCCeecHHHHHHHHHhCCChhHHHHHHHHh
Q 006457 91 SGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR---IRNIVSWTSMLTGYVQNDNAREALLLFKEF 167 (644)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (644)
+|.+++-.+-+.. ..|.++.+.|++-...++++.=... ..-..+|+.+...++....+++|.+.|..-
T Consensus 752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555444332 2345555556665555555432221 111234555555555555555555555543
Q ss_pred HhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHh
Q 006457 168 LLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFD 247 (644)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 247 (644)
. | ....+.++.+..+++..+.+. ..++.+....-.+.+++...|.-++|.+.|-
T Consensus 823 ~------------------~---~e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 823 G------------------D---TENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred c------------------c---hHhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 2 0 011222222222222222211 1234445555556666666666666665554
Q ss_pred cCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHh
Q 006457 248 GMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQM 280 (644)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 280 (644)
+-..|. +.+..|...+++.+|.++-+..
T Consensus 877 r~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 877 RRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 443332 2234455555555555554433
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.0011 Score=59.27 Aligned_cols=82 Identities=17% Similarity=0.055 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666677777777777777665 22222 3567777888888899999999999999988988888888888
Q ss_pred HHhhcCC
Q 006457 502 IYANAGR 508 (644)
Q Consensus 502 ~~~~~g~ 508 (644)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.46 E-value=0.0031 Score=61.08 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA-CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 436 (644)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56777777777777888888888887432 2233334333333 33356667788888888774 44567778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 437 LGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+.+.|+.+.|..+|++. ..-|.. ..|...+..-.++|+.+....+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888876 222333 4888888888899999999999888888877753
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.00077 Score=62.67 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=78.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 434 VDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
..-+.+.+++++|+..|.+. .+.| |.+-|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567789999999999886 5565 667777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 006457 512 VERTRSLMKN 521 (644)
Q Consensus 512 a~~~~~~m~~ 521 (644)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887654
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0023 Score=61.97 Aligned_cols=267 Identities=10% Similarity=-0.006 Sum_probs=163.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLG 304 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~ 304 (644)
..+.+.+..++.+|++.+....+ .+..-|..-...+..-|++++|+--.+.-+ .++|. +.+..-.-+.+...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~---r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV---RLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe---ecCCCccccccchhhhhhhhH
Confidence 34556667777778777766532 245567777777778888888776665544 22222 223334444444445
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHH-HHHHHhcCCHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KNVRSWTAM-IAGYGMHCRAREALDL 378 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~ 378 (644)
+..+|.+.++. ...+ ....|...++.+.. |-..+|..+ ..++...|++++|...
T Consensus 132 ~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 55555444431 1111 11122222222221 222334333 2356667888888777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHH-------------HHHHHHHhhcCCHHH
Q 006457 379 FYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHY-------------GCMVDLLGRAGKLKE 445 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-------------~~li~~~~~~g~~~~ 445 (644)
--..++.. ..+......--.++-..++.+.|...|++.. .+.|+...- .-=.....+.|++.+
T Consensus 192 a~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 192 AIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 66665532 1122211111123445677788888888763 455543222 122345678899999
Q ss_pred HHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 446 AYDLIEGM-KVKA-----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 446 A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
|.+.+.+. .+.| +...|-....+..+.|+.++|+.-.+.+++++|.-...|..-++++...++|++|.+-+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 4444 55566666677789999999999999999999999999999999999999999999999887
Q ss_pred hhC
Q 006457 520 KNR 522 (644)
Q Consensus 520 ~~~ 522 (644)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 654
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0011 Score=58.88 Aligned_cols=93 Identities=12% Similarity=-0.125 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 555666777777888888888888776 22232 3478888899999999999999999999999998888888888
Q ss_pred HHh-------hcCCchHHHHHHHHH
Q 006457 502 IYA-------NAGRWEDVERTRSLM 519 (644)
Q Consensus 502 ~~~-------~~g~~~~a~~~~~~m 519 (644)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666544
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0029 Score=63.54 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=82.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhc
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRA 440 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 440 (644)
-...+...|++++|+++|++.++.. +-+...|..+..++...|++++|+..++.+.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455677899999999999999853 34567888888899999999999999999955 455 577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 006457 441 GKLKEAYDLIEGM-KVKADFVVWGSLLGAC 469 (644)
Q Consensus 441 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 469 (644)
|++++|...|++. ...|+.......+..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999986 4566655544444333
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.36 E-value=0.0022 Score=50.08 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4445555555666666666666655532 222344444555555555555555555554321 1112234444444444
Q ss_pred hcCCHHHHHHHHHh
Q 006457 439 RAGKLKEAYDLIEG 452 (644)
Q Consensus 439 ~~g~~~~A~~~~~~ 452 (644)
..|++++|...+..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 44444444444433
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0014 Score=51.48 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCC-CCCcccHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCChhHH
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSL-TPTRSTFPCAIKSCSALH--------DLHSGKQAHQQAFIFGFHRDVFVS 111 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 111 (644)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677778999999999999999999 999999999999887542 244678899999999999999999
Q ss_pred HHHHHHHHh
Q 006457 112 SALIDMYSK 120 (644)
Q Consensus 112 ~~li~~~~~ 120 (644)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.0064 Score=54.18 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN--YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYG 431 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 431 (644)
....+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++... +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 345677777788888899999999988876543332 35677777788888888888888888754 334 355666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 432 CMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777766554333221 112577888999999999886 4445555555544
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.29 E-value=0.00029 Score=51.59 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=41.1
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...|++++|...++++++.+|+++.....++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888877654
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.0053 Score=52.40 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=76.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCch
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK-VK-ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWE 510 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (644)
..--+-..|++++|..+|+-+- .. -|..-|..|...+...++++.|...|..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999998762 22 255678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006457 511 DVERTRSLMKN 521 (644)
Q Consensus 511 ~a~~~~~~m~~ 521 (644)
.|.+.|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.00077 Score=48.75 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=47.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888876 3445 455788888888899999999999999999988864
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.23 E-value=0.047 Score=56.13 Aligned_cols=202 Identities=18% Similarity=0.142 Sum_probs=110.0
Q ss_pred HHHHHHhhcCCCchHHHHHH--HHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCC
Q 006457 192 ASVLSACSRVTVNGVTEGAH--GFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGL 269 (644)
Q Consensus 192 ~~ll~~~~~~~~~~~a~~~~--~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 269 (644)
...=++|.+..+....+-+. +.+.++|-.|+... +...++-.|++.+|-++|.+ +|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~ 660 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGH 660 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCc
Confidence 33444555555544443333 23445565565443 34456667777777777643 455
Q ss_pred hhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 006457 270 AAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFN 349 (644)
Q Consensus 270 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (644)
...|+++|..|+ - | -..+-+...|..++-+.+.+.-.. ..-++.--.+...++...|+.++|..+
T Consensus 661 enRAlEmyTDlR-M---------F-D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 661 ENRALEMYTDLR-M---------F-DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred hhhHHHHHHHHH-H---------H-HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh--
Confidence 566666666654 1 1 112223334444444333332211 111111112344555666777777654
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 350 QMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
...+|-.+-+.++-+++-. .+..+...+...+-+...+..|-++|..|-.
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 3345555555555555432 2444555555556667777788888888822
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGMK-VKADF 459 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 459 (644)
...++++....|+|.+|..+-++.| ..||+
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 2467888888999999999988885 44443
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.21 E-value=0.0002 Score=43.65 Aligned_cols=33 Identities=39% Similarity=0.538 Sum_probs=30.9
Q ss_pred HHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 482 AKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.0065 Score=47.83 Aligned_cols=81 Identities=12% Similarity=0.007 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCC-CCChhhHHHHHHHHHccc--------cHHHHHHHHHHHHHhCCCCchh
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDV-KCNAVTLSAVLLAIAHLG--------VLRLGKCIHDQVIKMDLEESVI 326 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~~~~~~~~ 326 (644)
+-...|..+...+++.....+|+.+. +.|+ .|+..+|+.++.+.++.. ++.....+++.|+..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 44556777777899999999999998 8898 999999999999987653 3556778889999999999999
Q ss_pred HHHHHHHHHHh
Q 006457 327 VGTSIIDMYCK 337 (644)
Q Consensus 327 ~~~~li~~~~~ 337 (644)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.00081 Score=50.01 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=50.0
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..+...++++.|.+.++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788999999999999999999999999999999999999999999998887544
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.001 Score=51.07 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 006457 369 HCRAREALDLFYKMIKAGV-RPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 446 (644)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++.. ...| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677888888888777532 124444555677777888888888877762 2222 223344456777777888887
Q ss_pred HHHHHh
Q 006457 447 YDLIEG 452 (644)
Q Consensus 447 ~~~~~~ 452 (644)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
No 181
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.054 Score=53.56 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch----hhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEK---NV----RSWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
.++-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777888888888777653 11 111223344555 6888888888888665556677777776665
Q ss_pred HHH---------ccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C------CCC
Q 006457 400 ACS---------HAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLK----EAYDLI---EG-M------KVK 456 (644)
Q Consensus 400 a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~------~~~ 456 (644)
.|- .....++|...|.+. +.+.|+..+--.++..+...|.-. +..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 123467788877766 556676544333444444444322 222222 11 1 122
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.|-..+.+++.++.-.||.+.|.+++++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 456677889999999999999999999999998775
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.17 E-value=0.02 Score=50.73 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHH
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP--NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCM 433 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 433 (644)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++.... +.| ....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 456666777777788888888888877642222 124666777777788888888888877743 233 24445555
Q ss_pred HHHHh
Q 006457 434 VDLLG 438 (644)
Q Consensus 434 i~~~~ 438 (644)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.0038 Score=60.42 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
++.+.|..+|+...+. +..+...|...+.-+.+.++.+.++.+|++......-.. ....|...++.=.+.|+++.+.+
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344455555554443 333444444445555555555555555555543211111 12355555555555555555555
Q ss_pred HHHhC
Q 006457 449 LIEGM 453 (644)
Q Consensus 449 ~~~~~ 453 (644)
+.+++
T Consensus 129 v~~R~ 133 (280)
T PF05843_consen 129 VEKRA 133 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.13 E-value=0.55 Score=50.77 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=142.5
Q ss_pred HhcCCchHHHHHHhhcCCC-CCcchHHHHHHHH--HcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006457 17 DKHSTNTNLTTLFNKYVDK-NNVFSWNSVIADL--ARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGK 93 (644)
Q Consensus 17 ~~~~~~~~A~~~f~~~~~~-p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (644)
...+++..|.+..+++..+ ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4567888888888876544 443 566777766 5889999999999988765544 7889999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChH----HHHHHHhhCCCCCCCeecHHHHHHHHHhCC-Ch---------hH
Q 006457 94 QAHQQAFIFGFHRDVFVSSALIDMYSKCGELS----DARKLFDEIPQRIRNIVSWTSMLTGYVQND-NA---------RE 159 (644)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~---------~~ 159 (644)
.+++..... .|+......+..+|++.+++. .|.+++...+. +...+=+.++.+.+.- .. .-
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999875 466777778888898888765 46777776665 4444444455444431 11 22
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHH-HhCCCCCccHHHHHHHHHHhcCC
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI-KRGFDSEVGVGNTLIDAYARGGH 238 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~ 238 (644)
|.+.++.+.. ..|-.-+..-...-+......+..++|..++..-. ..-..-+...-+.-++.+.+.++
T Consensus 173 A~~m~~~~l~-----------~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 173 AEKMVQKLLE-----------KKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred HHHHHHHHhc-----------cCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 3344444441 22222222222233334556677888888774322 22223345555677788888888
Q ss_pred HHHHHHHHhcCCC
Q 006457 239 VDVSRKVFDGMIE 251 (644)
Q Consensus 239 ~~~A~~~~~~~~~ 251 (644)
+.+..++-.++..
T Consensus 242 w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 242 WQELFELSSRLLE 254 (932)
T ss_pred hHHHHHHHHHHHH
Confidence 8877766666533
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.00088 Score=48.98 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555554331 1113444444445555555555555555444
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.06 E-value=0.0036 Score=63.02 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=88.1
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHC--CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKL--SLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSAL 114 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 114 (644)
+......++..+....+.+++..++-+.+.. ....-+.|.+++++.|...|..+.+..++..=+..|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4556677777777777788888888877764 33344567778888888888888888888888888888888899989
Q ss_pred HHHHHhCCChHHHHHHHhhCCCC--CCCeecHHHHHHHHHhC
Q 006457 115 IDMYSKCGELSDARKLFDEIPQR--IRNIVSWTSMLTGYVQN 154 (644)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~ 154 (644)
|+.+.+.|++..|.+++..|... ..+..|+..-+.++.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 98888888888888888776554 33445555545555444
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.03 E-value=0.0073 Score=60.89 Aligned_cols=120 Identities=7% Similarity=0.021 Sum_probs=77.7
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCC
Q 006457 105 HRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASEN 180 (644)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 180 (644)
+.+......+++......+++.+..++-+.... ..-..|..++|+.|.+.|..+.++.+++.=.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~------------ 130 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL------------ 130 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh------------
Confidence 334445555566666666666677666655543 1123344577888888888888888777755
Q ss_pred CCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 181 SDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 181 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
..|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 67777777777777777777777777777777776666555555555444444444
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.03 E-value=0.093 Score=45.44 Aligned_cols=130 Identities=11% Similarity=0.043 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC------CCCCH
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI-EPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK------VKADF 459 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~~ 459 (644)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|...+++.. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 467777777888888999999999999988855 44 4467777778888888899999988888762 2334
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.--.+...+...|..+.|+..|+.++.-.|+ +......+..+.++|+.+++..-+..+.+
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3344668888899999999999999998886 46667777888999999888776666554
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.061 Score=52.30 Aligned_cols=123 Identities=11% Similarity=0.132 Sum_probs=61.5
Q ss_pred HHHHHhc-CCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHH
Q 006457 332 IDMYCKC-GQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR-----PNYI-TFV 395 (644)
Q Consensus 332 i~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~ 395 (644)
...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-.. .+.. .|.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 555555555554431 11 123445566677777777777777776653221 1221 223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhh-cCCCCC--hhHHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHE-FNIEPG--VEHYGCMVDLLGR--AGKLKEAYDLIEGMK 454 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 454 (644)
..+-++...|++..|...|+..... .++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3333555567777777777776321 122222 3344555666543 335666666666663
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.97 E-value=0.018 Score=60.58 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHH
Q 006457 386 GVRPNYITFVSVLSACSHA-----GLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRA--------GKLKEAYDLIE 451 (644)
Q Consensus 386 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 451 (644)
+.+.|...|...+.+.... +..+.|..+|+++.+ ..|+ ...|..+..+|... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3566778888888876543 237789999999854 5776 44555544444322 22344555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 452 GM---K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 452 ~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+. + ...+...+..+.......|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 42 1 2335567877777777789999999999999999995 7899999999999999999999999887544
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.01 Score=52.98 Aligned_cols=97 Identities=13% Similarity=0.226 Sum_probs=74.0
Q ss_pred HHHHHhc--CCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 006457 345 RKAFNQM--KEKNVRSWTAMIAGYGMH-----CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA------------- 404 (644)
Q Consensus 345 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 404 (644)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 456777777777777643 66777777888899999999999999999877542
Q ss_pred ---CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 006457 405 ---GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442 (644)
Q Consensus 405 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (644)
.+-+-|++++++| +++|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346689999999 557999999999999999987765
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.89 E-value=0.2 Score=48.66 Aligned_cols=215 Identities=12% Similarity=0.106 Sum_probs=112.6
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHH---cCCCCCC-hhhHHHHHHHHHccccHHHHHHHH
Q 006457 238 HVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVK---STDVKCN-AVTLSAVLLAIAHLGVLRLGKCIH 313 (644)
Q Consensus 238 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~ 313 (644)
++++|..+|++ ....|-..|++++|.+.|.+... ..+-+.+ ...|......+ +..+++.|...
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~- 96 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIEC- 96 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHH-
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHH-
Confidence 56666655543 55667777788877777766531 0110000 01111111112 12234444333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCC
Q 006457 314 DQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMH-CRAREALDLFYKMIKA----GVR 388 (644)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~ 388 (644)
+...++.|.+.|++..|-+++.. +...|... |++++|++.|++..+. | .
T Consensus 97 --------------~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 97 --------------YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp --------------HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred --------------HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 34456678888888888776554 56677777 8999999999887642 3 2
Q ss_pred CC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC----CCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---
Q 006457 389 PN--YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI----EPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA--- 457 (644)
Q Consensus 389 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p--- 457 (644)
+. ..++..+...+.+.|++++|.++|+++....-- ..+. ..+-..+-.+...|++..|.+.+++.. ..|
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 21 235666777788889999999999888653211 1122 123333445666788888888888752 223
Q ss_pred C---HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 458 D---FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 458 ~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
+ ......|+.++. .||.+.-..+....-.+.+-+
T Consensus 231 ~s~E~~~~~~l~~A~~-~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYE-EGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp TSHHHHHHHHHHHHHH-TT-CCCHHHHCHHHTTSS---
T ss_pred CcHHHHHHHHHHHHHH-hCCHHHHHHHHHHHcccCccH
Confidence 1 224455556553 344443333333333333333
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.89 E-value=0.19 Score=47.46 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---CHhH---HHHHHHHHHHCCChhHHHHHHHHhHHc
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIEK---DAVT---WNSIIAIYAQNGLAAEALDVFDQMVKS 283 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 283 (644)
....+.+.|++++|.+.|+.+... +... .-.++.+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455677888888888777332 1122 233556677778888888888777633
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.83 E-value=0.19 Score=43.63 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=52.0
Q ss_pred CCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHH
Q 006457 286 VKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-----NVRSWT 360 (644)
Q Consensus 286 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 360 (644)
..|+...-..+..+....|+..+|...+.+...--+..|..+.-.+.++....+++..|...++.+.+- ...+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 344444444555555556666666666655555444455555555555555555655555555554321 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
.+...|...|++.+|...|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344455555555555555555554
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.89 Score=48.24 Aligned_cols=332 Identities=12% Similarity=0.032 Sum_probs=167.2
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC---ChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCC
Q 006457 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCG---ELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 156 (644)
|.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +.+.+..+-+++.......++|..+.+...+.|+
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 444455566666666665553211111 455566666665542 2222333333333212355677777777777888
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG 236 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 236 (644)
++-|..+++.=... ...-.+-.+..-+...+.-+...|+.+...+++-++.+.- +...+ ....
T Consensus 523 ~~LA~kLle~E~~~--------~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l 585 (829)
T KOG2280|consen 523 FELARKLLELEPRS--------GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTL 585 (829)
T ss_pred HHHHHHHHhcCCCc--------cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHH
Confidence 88887777652200 0000111244455666677777777777666665554321 00000 1111
Q ss_pred CCHHHHHHHHhcCCC-CCHhHHHHHHHHHHHCCChhHHHHHHH--HhHH---cCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 237 GHVDVSRKVFDGMIE-KDAVTWNSIIAIYAQNGLAAEALDVFD--QMVK---STDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 237 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~---~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
.+...|..+|....+ .|..+ +..+-+.++-.+++.-|. .... ..+..|+ ......+|++........
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 122333444433321 11111 011112222222222211 1000 0122222 223334444433311111
Q ss_pred ----------HHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 311 ----------CIHDQVI-KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 311 ----------~i~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.+.+.+. +.|.....-+.+--+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-+++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1111111 12222222333444555666788888888888888888888888888888888887766655
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
+.+. .+.-|.....+|.+.|+.++|.+++.+. .|.. -.+.+|.+.|++.+|.++--+
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv---~~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV---GGLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhcc---CChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 4432 1455666788888888888888887766 1221 467788888888888776443
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.80 E-value=0.0026 Score=46.63 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHhhccCC
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHK-NVDLGEIAAKKLFELEP 490 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 490 (644)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777778888888888888888765 3344 4557778888888888 68888888888888877
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.038 Score=45.23 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=65.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHh
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPN--YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLG 438 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 438 (644)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++....++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999998886654 34667778888899999999999998866432111 2223333455677
Q ss_pred hcCCHHHHHHHHHh
Q 006457 439 RAGKLKEAYDLIEG 452 (644)
Q Consensus 439 ~~g~~~~A~~~~~~ 452 (644)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887654
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.76 E-value=0.0066 Score=54.12 Aligned_cols=100 Identities=10% Similarity=0.121 Sum_probs=77.2
Q ss_pred hHHHHHHhhc--CCCCCcchHHHHHHHHHcC-----CCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhcc---------
Q 006457 23 TNLTTLFNKY--VDKNNVFSWNSVIADLARG-----GDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSAL--------- 86 (644)
Q Consensus 23 ~~A~~~f~~~--~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------- 86 (644)
..-...|+.. ..+ |-.+|..+|..|.+. |..+-....+..|.+.|+.-|..+|+.||+.+=+.
T Consensus 31 ~~~~~~f~~~~~~~k-~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 31 APHEELFERAPGQAK-DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred cchHHHHHHHhhccc-cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 3345666665 345 778899999988744 66777778889999999999999999999887442
Q ss_pred -------CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 006457 87 -------HDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGE 123 (644)
Q Consensus 87 -------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (644)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1235678888888888888888888888888876654
No 199
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.72 E-value=0.14 Score=43.61 Aligned_cols=92 Identities=8% Similarity=-0.066 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
.+...+...|++++|.++|+-+.. | +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344455678888888888886653 3 55677778888888888888888888887754 3456677777778888888
Q ss_pred HHHHHHHHHHHhhhcC
Q 006457 407 VQEGWHWLNTMGHEFN 422 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~ 422 (644)
.+.|++.|+..+.-.+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887766443
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.72 E-value=0.25 Score=51.08 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=33.6
Q ss_pred cHHHHHHHHhccCCcHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCC
Q 006457 75 TFPCAIKSCSALHDLHSGK--QAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIP 135 (644)
Q Consensus 75 ~~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 135 (644)
.++..=++|.+.++..--+ .-++.+.+.|-.|+... +...++-.|.+.+|.++|.+-.
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcC
Confidence 3444455565555544322 23455666676676543 3344556788888888887643
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.69 E-value=0.012 Score=57.11 Aligned_cols=126 Identities=12% Similarity=0.026 Sum_probs=63.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH---hhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTM---GHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-------KV-KADFVV 461 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~~ 461 (644)
|..|.+.|--.|+++.|+..++.= .+++|-.. ....+..|...+.-.|+++.|.+.+... +. .-...+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 344444444455666666554421 12333222 2344555566666666666666655432 11 112234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcc----C--CCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFEL----E--PNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
.-+|.+.|....+++.|+..+.+-+.+ + .....++..|+++|...|.-+.|..+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 445556665556666666655544332 1 223345666666666666666666555443
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.69 E-value=0.011 Score=56.28 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHH
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLS 500 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 500 (644)
.|..-+..+.+.|++++|...|+.. ...|+. ..+--+..++...|+++.|...|+++++..|++ +..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666654 222322 244455666666677777777777776666553 33444456
Q ss_pred HHHhhcCCchHHHHHHHHHhh
Q 006457 501 NIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777766654
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.68 E-value=0.0063 Score=60.78 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666666666666666666666653 455553 24666666666666666666666666665
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1.2 Score=47.40 Aligned_cols=322 Identities=10% Similarity=0.028 Sum_probs=179.1
Q ss_pred CCCCCccCCHhhHHH-----HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC---HHHHHHHHhcCC
Q 006457 179 ENSDNVFVDSVAIAS-----VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH---VDVSRKVFDGMI 250 (644)
Q Consensus 179 ~~~~~~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 250 (644)
+...|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+=+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 336777777666654 4555566666777777665542211111 4566666666666533 233444444454
Q ss_pred C--CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCC----CCChhhHHHHHHHHHccccHHHHHHHHHHHHHh-----
Q 006457 251 E--KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDV----KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM----- 319 (644)
Q Consensus 251 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----- 319 (644)
. ...++|..+..---..|+.+-|..+++.=. ..+. -.+..-+...+.-+...|+.+....++-.+.+.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~ 580 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS 580 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 4 456778888877778888888887765432 1111 012223445566666777777766666555432
Q ss_pred ------CCCCchhHHHHHHHH--------HHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCC---HHHH
Q 006457 320 ------DLEESVIVGTSIIDM--------YCKCGQVDLARKAFNQMK-------EKNVRSWTAMIAGYGMHCR---AREA 375 (644)
Q Consensus 320 ------~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~---~~~A 375 (644)
..+.....|.-++.- +-..++-..+...|..-. +.-.........++++... ..+|
T Consensus 581 l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 581 LFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 111122222222210 011111112211111000 1111122233344444332 1111
Q ss_pred -------HHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 006457 376 -------LDLFYKMI-KAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAY 447 (644)
Q Consensus 376 -------~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (644)
+.+.+.+. +.|..-...|.+--+.-+...|+..+|.++-... . -||...|-.-+.+++..+++++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHH
Confidence 12222222 1233334445556666777888888888876655 2 378888888888999999999888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 448 DLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 448 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
++-+.++ .++-|.-+..+|.+.|+.++|...+-+.-.+ .-...+|.+.|++.+|.++--+
T Consensus 736 kfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 736 KFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 8777663 3566777888999999999988887665322 2567788899999988876433
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.66 E-value=0.73 Score=44.98 Aligned_cols=240 Identities=18% Similarity=0.181 Sum_probs=156.3
Q ss_pred HHCCChhHHHHHHHHhHHcCCCCCChhh----HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006457 265 AQNGLAAEALDVFDQMVKSTDVKCNAVT----LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ 340 (644)
Q Consensus 265 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 340 (644)
.-.|+++.|.+-|+.|. . |..| +..+.-.-.+.|+.+.|..+-+..-..- +.-.....+.+...+..|+
T Consensus 131 l~eG~~~~Ar~kfeAMl-~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 131 LLEGDYEDARKKFEAML-D-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGD 203 (531)
T ss_pred HhcCchHHHHHHHHHHh-c-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCC
Confidence 34677888888888886 2 2222 2222233346677777777776665433 2234456778888888999
Q ss_pred HHHHHHHHHhcC-----CCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHH
Q 006457 341 VDLARKAFNQMK-----EKNVR--SWTAMIAGYGM---HCRAREALDLFYKMIKAGVRPNYIT-FVSVLSACSHAGLVQE 409 (644)
Q Consensus 341 ~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~ 409 (644)
++.|+++.+.-. ++|+. .--.|+.+-+. .-+...|...-.+..+ +.||.+- -.....++.+.|++.+
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhh
Confidence 999999888654 34442 22233332221 2345666666665555 5677553 3344568889999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH--HHH--HHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 410 GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE--AYD--LIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~--~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
+-.+++.+- ...|.+..+...+ +.|.|+... ... -+..| +| +..+..++..+-...|++..|..-.+.
T Consensus 282 g~~ilE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 282 GSKILETAW---KAEPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred hhhHHHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 999999994 4567666655443 456665322 111 23333 45 455666777888899999999999999
Q ss_pred hhccCCCCchhHHHHHHHHhhc-CCchHHHHHHHHHhh
Q 006457 485 LFELEPNNCGYHVLLSNIYANA-GRWEDVERTRSLMKN 521 (644)
Q Consensus 485 ~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 521 (644)
+....|.. ..|.+|+++-... |+-.++...+-+..+
T Consensus 355 a~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 355 AAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 99999985 7888888886544 988888887766654
No 206
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.59 E-value=0.93 Score=45.26 Aligned_cols=420 Identities=10% Similarity=0.064 Sum_probs=217.1
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHH--HHhCCC
Q 006457 85 ALHDLHSGKQAHQQAFIFGFHRD------VFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTG--YVQNDN 156 (644)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~--~~~~g~ 156 (644)
+.+++.++..+|..+.+.. ..+ ....+.++++|.. ++++.....+....+..| ...|-.+..+ +.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhh
Confidence 3455666666666555432 111 1233456666653 345555444444443323 3334444433 235667
Q ss_pred hhHHHHHHHHhHhhhhccCCCCC--CCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhC----CCCCccHHHHHH
Q 006457 157 AREALLLFKEFLLEESECGGASE--NSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRG----FDSEVGVGNTLI 230 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~--~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li 230 (644)
+.+|++.+.....+-.......+ +-...-+|-.-=......+...|.+.+|+.++..++..= ...+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 77777776665422000000000 000011122222445666788999999999988887654 347889999988
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCC-------------------------------hhHHHHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGL-------------------------------AAEALDVFDQ 279 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------------------------------~~~A~~~~~~ 279 (644)
-++++.--++-- +.+...=..-|--||..|.+.=. ..--++++..
T Consensus 175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 888765322211 11111111122233333322110 0111111111
Q ss_pred hHHcCCCCCChh-hHHHHHHHHHccccHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 006457 280 MVKSTDVKCNAV-TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE----SVIVGTSIIDMYCKCGQVDLARKAFNQMK-- 352 (644)
Q Consensus 280 m~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 352 (644)
-. ..-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-+.
T Consensus 251 We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 251 WE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 12 334555533 22333333333 5666666665555443211 23456667777778888888888777554
Q ss_pred CCChh-------hHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHH---HHHHccCC-HHHHHHHHHH
Q 006457 353 EKNVR-------SWTAMIAGYGM----HCRAREALDLFYKMIKAGVRPNYITFV-SVL---SACSHAGL-VQEGWHWLNT 416 (644)
Q Consensus 353 ~~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll---~a~~~~g~-~~~a~~~~~~ 416 (644)
+|+.. +-.++-+..+. .-+...=+.+|+...... .|..-.. .++ .-+-+.|. -++|+++++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34322 11222222221 123334456666666543 3333221 222 23444555 7788888888
Q ss_pred HhhhcCCCC-ChhHHHHHH----HHHhhc---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHH
Q 006457 417 MGHEFNIEP-GVEHYGCMV----DLLGRA---G---KLKEAYDLIEGMKVKA----DFVVWGSLLGA--CRIHKNVDLGE 479 (644)
Q Consensus 417 ~~~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~ 479 (644)
+.+ +.| |...-|.+. ..|..+ . ++-+-..++++.++.| +...-|.|..| +..+|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 854 333 333222221 122211 1 1222334455556555 33455555544 36899999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
-...-+.++.| ++.+|.+++-.+....++++|..+++.+.
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999 68999999999999999999999998764
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.56 E-value=0.0037 Score=40.88 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999988877764
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.14 Score=47.03 Aligned_cols=169 Identities=11% Similarity=0.032 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CCH--------hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMIE--KDA--------VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA 295 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 295 (644)
+++|+..|.-..-+++-...|+.-.. ..+ ...+.++..+...|.+.-.+..+++.. +...+.+......
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHH
Confidence 56677776666666666666655422 222 334567777777888888899999988 5555667777888
Q ss_pred HHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHH
Q 006457 296 VLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSI-----IDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYG 367 (644)
Q Consensus 296 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 367 (644)
+.+.-.+.|+.+.|...++...+..-..+...++.+ ...|.-.+++..|...|++++.. |.+.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 888888899999999999988775434444444433 33456677888888888887753 4555555444555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSV 397 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 397 (644)
-.|+..+|++..+.|... .|...+-.++
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 568889999999999874 5655544433
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.54 E-value=0.078 Score=43.43 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=47.3
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCC--hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHH
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCN--AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE--ESVIVGTSIIDMY 335 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~~ 335 (644)
+..++-..|+.++|+.+|++.. ..|.... ...+..+.+++...|++++|..+++........ .+..+...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4455666777777777777776 4554443 224444555566666666666666665543211 0111111222234
Q ss_pred HhcCCHHHHHHHHHhc
Q 006457 336 CKCGQVDLARKAFNQM 351 (644)
Q Consensus 336 ~~~g~~~~A~~~~~~~ 351 (644)
...|+.++|.+.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4555555555554443
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.28 Score=45.08 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=129.3
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHH-Hcccc-HH-HHHHHHHHHHH-hCCCCchhHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI-AHLGV-LR-LGKCIHDQVIK-MDLEESVIVG 328 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~-~~~~~-~~-~a~~i~~~~~~-~~~~~~~~~~ 328 (644)
....|+.-+..+++....++|..-+.... .. -.||-. |...-..+ .+.|. +. ..+.+|.++.+ .|. -+
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~-~l-D~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pq 139 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFG-NL-DQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQ 139 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhc-cC-CCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cH
Confidence 34456666777788777777765555443 11 112210 00000000 01121 11 22334444433 222 24
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--C--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEK--N--------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL 398 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (644)
++|+..|.-..-+++-...|+.-..| . ...-+.++..+.-.|.+.-.+.++.+.++...+-++.....|.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 55666665554555555555443322 1 2234566667777788888888888888866556777778888
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcC----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFN----IEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKV--KADFVVWGSLLGACRIH 472 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~ 472 (644)
+.-.+.|+.+.|..+|+...+..+ +.-...+.......|.-+.++.+|...+.+.+. ..|++..|.-.-...-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 888888999999999987754322 222222233333445556677777777776642 12344444444444455
Q ss_pred CChhHHHHHHHHhhccCCCCch
Q 006457 473 KNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
|+...|.+..+.+.+..|....
T Consensus 300 g~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHhccCCccch
Confidence 6777777777777777776443
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.36 E-value=0.94 Score=42.74 Aligned_cols=191 Identities=11% Similarity=0.065 Sum_probs=94.9
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh-hhH---HHHHHHHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 252 KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA-VTL---SAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~---~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
.+...+-.....+...|++++|++.|+++. . .-|+. .+. -.+..++-+.++++.|...++..++........-
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~-~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALD-N--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 344445455666788999999999999997 2 23333 222 3455667788888888888888877543222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc---C--CCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQM---K--EKNV-------RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFV 395 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~---~--~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 395 (644)
+...+.+.+.. ......|... . .+|. .++..++.-|-...-..+|...+..+... .-..-+
T Consensus 107 ~a~Y~~g~~~~---~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~- 179 (243)
T PRK10866 107 YVLYMRGLTNM---ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL- 179 (243)
T ss_pred HHHHHHHHhhh---hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-
Confidence 22222222210 0000011111 0 0111 12223333333333333443333332211 001111
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
.+..-|.+.|.+..|..-++.+++++.-.| ..+....++.+|...|..++|.+....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344456666677667666666665543333 244555566666667776666665543
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.026 Score=55.20 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCE
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGK 538 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 538 (644)
..++..|..++.+.+.+..|++...+.++++|+|.-+..--+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 3466677788889999999999999999999999999999999999999999999999998752
Q ss_pred EEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 006457 539 VHAFLVGDKEHPQHEKIYEYLEELNVKLQE 568 (644)
Q Consensus 539 ~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~ 568 (644)
.|.+..|..++..+..++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHH
Confidence 35566777777777777664
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.26 E-value=0.14 Score=49.95 Aligned_cols=153 Identities=9% Similarity=-0.016 Sum_probs=93.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhh---hcCC-CCChh
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKM----IKAGVR-PNYITFVSVLSACSHAGLVQEGWHWLNTMGH---EFNI-EPGVE 428 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~-~p~~~ 428 (644)
.|..|...|.-.|+++.|+..-+.- ++-|-+ .....+..+.+++.-.|+++.|.+.++.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666677888887655432 223322 2334677788888888888888888776532 1111 11244
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCC-Cch
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-------K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPN-NCG 494 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~-~~~ 494 (644)
..-+|...|.-...+++|+.++.+- . ..-....+-+|..++...|..+.|....++.+++ +|. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 5556777787778888888877653 1 1123446667888888888888888888777653 222 233
Q ss_pred hHHHHHHHHhhcCCch
Q 006457 495 YHVLLSNIYANAGRWE 510 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~ 510 (644)
....|++.-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 4455555554555433
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.21 E-value=0.016 Score=42.94 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
..|.+.+++++|.++++.+ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677888888888888876 3444 45577777888889999999999999999999987655443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.083 Score=45.51 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777888999999999999999999999999999999999999999999999998853
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.03 E-value=0.1 Score=49.73 Aligned_cols=100 Identities=6% Similarity=-0.037 Sum_probs=60.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLG 467 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 467 (644)
|...+.-..+.|++++|...|+.+.+.+.-.+ ....+--+...|...|++++|...|+.+ ...|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445667777776766655321111 0234556667777777777777777665 11122 334445566
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66778888888888888888888764
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.01 E-value=2.6 Score=44.49 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=47.9
Q ss_pred CCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH-----
Q 006457 287 KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTA----- 361 (644)
Q Consensus 287 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 361 (644)
+-|+...-.+..++.+.|.-++|.+.|-+ .+. | .+.++.+...+++.+|.++-++..-|.+.+.-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34555555666677777777766655432 121 1 234556666677777777766655444433211
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHH
Q 006457 362 ---------MIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 362 ---------li~~~~~~g~~~~A~~~~~~m~ 383 (644)
-|..+.+.|+.-+|-+++.+|.
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 1333445555555566666664
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.01 Score=44.73 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcc----C---CCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFEL----E---PNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+++.+...+...|++++|+..+++++++ . |.-..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666665543 1 1224566677777777777777777776653
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.092 Score=43.46 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH--------------hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTM--------------GHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM--- 453 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 453 (644)
..++..++.++++.|+++....+++.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445555666666666666555555443 011223455566666666666666666666665543
Q ss_pred -CCCCCHHHHHHHHHHH
Q 006457 454 -KVKADFVVWGSLLGAC 469 (644)
Q Consensus 454 -~~~p~~~~~~~ll~~~ 469 (644)
+++-+...|..|+.=+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 3333455666665433
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.85 E-value=0.11 Score=43.14 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
..++.++|-++++.|+++....+.+..=..|+. +-...+. --......|+..++.+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 455667777777777777777766554221111 0000010 111234679999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
|++..|.++.+...+.++++.+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998888999988887443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.80 E-value=0.012 Score=44.35 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-------K-VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444555555444444433 1 1122 33555556666666666666666666554
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.66 E-value=0.9 Score=37.15 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=85.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
.-.|..++..++..+.... .+..-++.++.-...+-+-+-..+.++.+-+- .| ...+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHHH
Confidence 3457777778888777653 23444555554444444445555566655332 22 2346666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 447 YDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 447 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
...+-.++. +..-...-+......|.-+.-.+++..+.+-+..+|....-++++|.+.|...++-+++++.-++|++
T Consensus 76 i~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 666666542 33344566778888999999999999988766667889999999999999999999999999999974
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.16 Score=43.78 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hhcCCCCChhH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG----HEFNIEPGVEH 429 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 429 (644)
..++..+...|++++|+.+.+++.... +-|...+..+|.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334455555666666666666666542 3355566666666666666666666665543 23466665544
No 224
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.87 Score=44.88 Aligned_cols=276 Identities=14% Similarity=0.065 Sum_probs=156.9
Q ss_pred HHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHh--HHHHHHHHHHHCCChhH
Q 006457 196 SACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE-KDAV--TWNSIIAIYAQNGLAAE 272 (644)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~~~ 272 (644)
.++.+...+..+...+..+++.... +..-|..-...|...|++++|.--.+.-.+ .|-. ...-.-.++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 4455556677777777777776533 344455555556666777766654433322 2222 23333444444455555
Q ss_pred HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCchhHHHHH-HHHHHhcCCHHHHHHHHHh
Q 006457 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL-EESVIVGTSI-IDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 350 (644)
|.+.|+.-. .+ ....+...++.+..... +|.-..+..| ...+.-.|+.++|.+.-..
T Consensus 136 A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 136 AEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 555444211 01 01111122222222221 1222333222 2345567888888877766
Q ss_pred cCCCChh-hHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------------HHHHccCCHHHHHHHH
Q 006457 351 MKEKNVR-SWTAMIA--GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL-------------SACSHAGLVQEGWHWL 414 (644)
Q Consensus 351 ~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-------------~a~~~~g~~~~a~~~~ 414 (644)
+.+-|.. .+...+. ++.-.++.+.|...|++.+. ..|+...-.+.- +-..+.|.+..|.+.+
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 6654433 2222333 34456788899999998877 456655433322 2235779999999999
Q ss_pred HHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCChhHHHHHHHHhh
Q 006457 415 NTMGHEFNIEP-----GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFV-VWGSLL--GACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 415 ~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll--~~~~~~g~~~~a~~~~~~~~ 486 (644)
...+ ++.| +...|.....+..+.|++++|+.--+..- +-|.. ++.-+. .++...+++++|.+-++++.
T Consensus 273 teal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 273 TEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8873 4555 46667777788889999999998887662 22333 333333 44456788999999999998
Q ss_pred ccCCCCchhHHHHH
Q 006457 487 ELEPNNCGYHVLLS 500 (644)
Q Consensus 487 ~~~p~~~~~~~~l~ 500 (644)
+...+ ......|.
T Consensus 349 q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 349 QLEKD-CEIRRTLR 361 (486)
T ss_pred hhccc-cchHHHHH
Confidence 87755 44444443
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.40 E-value=3.3 Score=41.43 Aligned_cols=83 Identities=8% Similarity=0.080 Sum_probs=54.0
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDK-N-NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.|..+|-.|++.|..++..++.++++++|..+ | =..+|..-+++-....+++....+|.+.....+ +...|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 345567777888888888888888888887654 2 223577777766666777777777777766433 344555555
Q ss_pred HHHhccC
Q 006457 81 KSCSALH 87 (644)
Q Consensus 81 ~~~~~~~ 87 (644)
.-..+.+
T Consensus 117 ~YIRr~n 123 (660)
T COG5107 117 EYIRRVN 123 (660)
T ss_pred HHHHhhC
Confidence 5444433
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.29 E-value=0.16 Score=47.07 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=83.5
Q ss_pred HHHHHHhcC--CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 006457 344 ARKAFNQMK--EKNVRSWTAMIAGYGMH-----CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG----------- 405 (644)
Q Consensus 344 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 405 (644)
.+..|.... ++|-.+|-+++..+..+ +..+=.-..++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 67888888888887654 556667777889999999999999999998875432
Q ss_pred -----CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhC
Q 006457 406 -----LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKL-KEAYDLIEGM 453 (644)
Q Consensus 406 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 453 (644)
.-+-++.+++.| +.+|+.||.++-..|+.++++.|.. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234588999999 6689999999999999999998864 3344444344
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.35 Score=45.75 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
|...|-.|...|...|+++.|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344454455555555555555555554444
No 228
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.20 E-value=0.45 Score=45.88 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCC--C--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH---
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIE--P--GVEHYGCMVDLLGRAGKLKEAYDLIEGM-------KVKADFVVW--- 462 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~--- 462 (644)
+..|....+.++++++.|+...+-..-. | ...++..|...|++..++++|.-+..+. +++.=..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555566666665553311111 1 1344555666666666665554443332 211101111
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHhhccC------CCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 463 --GSLLGACRIHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 463 --~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
-.|.-+++..|....|.+..+++.++- |-.......++++|...|+.|.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223345555666666666655554431 11222334556666666666555554443
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.18 E-value=2.6 Score=38.90 Aligned_cols=195 Identities=17% Similarity=0.101 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
...+......+...+.+..+...+..... .....+..+...+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34445555556666666666655555431 2334455555555566666666666666665332221 11111222
Q ss_pred -HHHccCCHHHHHHHHHHHhhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 006457 400 -ACSHAGLVQEGWHWLNTMGHEFNI--EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD--FVVWGSLLGACRIHK 473 (644)
Q Consensus 400 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g 473 (644)
++...|+++.+...+..... ... ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776622 111 112333334444456667777777776665 22233 456666667777777
Q ss_pred ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 474 NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+.+.+...+....+..|.....+..+...+...|.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776555566666666666667777777766654
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.17 E-value=1.7 Score=39.74 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHh
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLG 438 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 438 (644)
..++.-|-......+|...+..+... .-.. -..+..-|.+.|.+..|..-++.+++++.-.+. ......|+.+|.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33444454455555555544444321 0111 112455567777777777777777665432222 344556667777
Q ss_pred hcCCHHHH
Q 006457 439 RAGKLKEA 446 (644)
Q Consensus 439 ~~g~~~~A 446 (644)
+.|..+.|
T Consensus 190 ~l~~~~~a 197 (203)
T PF13525_consen 190 KLGLKQAA 197 (203)
T ss_dssp HTT-HHHH
T ss_pred HhCChHHH
Confidence 77776644
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.2 Score=49.28 Aligned_cols=138 Identities=12% Similarity=-0.005 Sum_probs=94.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 006457 363 IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (644)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-..++..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777888887777776541 10 111111122211111 113356667778889999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH-HHHHHHH
Q 006457 443 LKEAYDLIEGM-KVK-ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV-ERTRSLM 519 (644)
Q Consensus 443 ~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 519 (644)
+.+|++..++. ..+ +|+-..-.-..++...|+++.|+..|+++++++|+|-.+..-|+.+-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887765 333 45656666778999999999999999999999999998888888877776665555 7888888
Q ss_pred hhC
Q 006457 520 KNR 522 (644)
Q Consensus 520 ~~~ 522 (644)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 543
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.99 E-value=0.13 Score=51.66 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV----EHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+...++.+..+|...|++++|+..|+..++ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566666666666666666666666532 44542 23556666666666666666666654
No 233
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=6.5 Score=42.34 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhH
Q 006457 108 VFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 159 (644)
..++...|+.+.-.|++++|-...-.|.. .+..-|.-.+..+...++...
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhccccccch
Confidence 34667777888888888888888777777 666677766666666665543
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.96 E-value=5.6 Score=41.55 Aligned_cols=412 Identities=11% Similarity=0.066 Sum_probs=216.8
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPC-AIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALI 115 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 115 (644)
+-..|+.+|.---+....+.+..++..+... -|..+-|-. ....=.+.|..+.+.++|+..+. |++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4456777776555555556666677766642 344433222 22222456777888888888776 4566666776666
Q ss_pred HHHH-hCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhh
Q 006457 116 DMYS-KCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVA 190 (644)
Q Consensus 116 ~~~~-~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t 190 (644)
..+. ..|+.+...+.|+..... ..+...|...|.--..++++.....+|++.+. ... .-
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile------------iP~----~~ 184 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE------------IPL----HQ 184 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh------------hhh----hH
Confidence 5544 346777777777765543 33566688888877788888888888888762 111 11
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CCHhHHHHHHH
Q 006457 191 IASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--------KDAVTWNSIIA 262 (644)
Q Consensus 191 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 262 (644)
|+....-+ ....+.. ++. . .-..+++.++=..... +....+..-+.
T Consensus 185 ~~~~f~~f-------------~~~l~~~-~~~--~----------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~ 238 (577)
T KOG1258|consen 185 LNRHFDRF-------------KQLLNQN-EEK--I----------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVK 238 (577)
T ss_pred hHHHHHHH-------------HHHHhcC-Chh--h----------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHh
Confidence 11111111 1111100 000 0 0000111100000000 00001100000
Q ss_pred HHH-HCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCchhHHHHHHHH
Q 006457 263 IYA-QNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD-------LEESVIVGTSIIDM 334 (644)
Q Consensus 263 ~~~-~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-------~~~~~~~~~~li~~ 334 (644)
--. ..+..+++.....+.. ...-..+-..-.....+..++.-++.. .+++..+|...++-
T Consensus 239 ~~~~~s~~l~~~~~~l~~~~------------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 239 DSTDPSKSLTEEKTILKRIV------------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred hccCccchhhHHHHHHHHHH------------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 000 0000111111110000 000001111111222222333333221 12345677777888
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006457 335 YCKCGQVDLARKAFNQMKEKNV---RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGW 411 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 411 (644)
-.+.|+.+.+.-+|++..-|-. ..|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+-..|+.+.|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 8888999999989888775421 2344444434444888888877777665433333333322333356678999999
Q ss_pred HHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHHhcCChhHHHHH
Q 006457 412 HWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAY---DLIEGM-KVKADFVVWGSLL-----GACRIHKNVDLGEIA 481 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll-----~~~~~~g~~~~a~~~ 481 (644)
.+++.+..+ . |+ +..-..-+....+.|..+.+. +++... +.+-+..+...+. --+...++.+.|..+
T Consensus 387 ~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 387 VILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999765 3 55 333344466777889988888 444433 2222333333332 223456789999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 482 AKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
+.++.+..|++...|..+.+.....+.
T Consensus 464 l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 999999999999999999888766653
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=94.94 E-value=0.41 Score=48.37 Aligned_cols=61 Identities=5% Similarity=-0.091 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
|+.....+..+....++.+.|...|+++..++|+.+..+...+....-+|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444445555566666666666666666666666666666666666666665555
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.91 E-value=4.7 Score=40.44 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHH-HHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAG-VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHY-GCM 433 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 433 (644)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.-... -||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3457777777777777888999999999888 6678888888887655 57788888888865442 3444443 456
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 434 VDLLGRAGKLKEAYDLIEGM--KVKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+.-+.+-++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.++.|...
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 67778889989999999855 12223 45888888888889999988888888888888753
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=0.16 Score=47.24 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHH
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-------KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVL 498 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 498 (644)
.|+.-++. .+.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|++ |..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34443333 2455566666665544 133444444 6666666677777777766666655443 455666
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|+.+..+.|+-++|..++++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666677777777777777766543
No 238
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.69 E-value=4.8 Score=39.59 Aligned_cols=310 Identities=15% Similarity=0.080 Sum_probs=185.9
Q ss_pred hHHHHHHHhhCCCCCCCeecHHHHHHHHHh--CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh--
Q 006457 124 LSDARKLFDEIPQRIRNIVSWTSMLTGYVQ--NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS-- 199 (644)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~-- 199 (644)
...+.+.|..-+. -..|..|-.++.- .|+-..|.++-.+- ..-+.-|...+..+|.+-.
T Consensus 69 P~t~~Ryfr~rKR----drgyqALStGliAagAGda~lARkmt~~~-------------~~llssDqepLIhlLeAQaal 131 (531)
T COG3898 69 PYTARRYFRERKR----DRGYQALSTGLIAAGAGDASLARKMTARA-------------SKLLSSDQEPLIHLLEAQAAL 131 (531)
T ss_pred cHHHHHHHHHHHh----hhHHHHHhhhhhhhccCchHHHHHHHHHH-------------HhhhhccchHHHHHHHHHHHH
Confidence 3445555554432 2345566555554 46666666665553 2234556666777777644
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccH--HHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGV--GNTLIDAYARGGHVDVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 274 (644)
-.|+.+.+++-|+.|.. .|.... ...|.----+.|..+.|...-++.-. | -...|.+.+...+..|+++.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 45899999999998864 222211 12233333467888888877776633 2 3467888999999999999999
Q ss_pred HHHHHhHHcCCCCCChhh--HHHHHHHHHc---cccHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHH
Q 006457 275 DVFDQMVKSTDVKCNAVT--LSAVLLAIAH---LGVLRLGKCIHDQVIKMDLEESVIV-GTSIIDMYCKCGQVDLARKAF 348 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t--~~~ll~a~~~---~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 348 (644)
++++.-....-+.++..- -..++.+-+. ..+...|+..-.+..+ +.|+..- --.-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 999887755556666532 2223332211 1245555555555554 3344322 223456778889998888888
Q ss_pred HhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC
Q 006457 349 NQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIK-AGVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE 424 (644)
Q Consensus 349 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 424 (644)
+.+-+ |....| .+..+++.|+ .++.-+++..+ ..++|| ......+..+-...|++..|..--+.. ....
T Consensus 287 E~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa---~r~~ 359 (531)
T COG3898 287 ETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA---AREA 359 (531)
T ss_pred HHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH---hhhC
Confidence 87754 333333 2233444554 44444444332 124554 456667777778888888877766665 2467
Q ss_pred CChhHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHH
Q 006457 425 PGVEHYGCMVDLLGR-AGKLKEAYDLIEGMKVKADFVVW 462 (644)
Q Consensus 425 p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~ 462 (644)
|....|..|.+.-.. .|+-.++...+.+.-..|....|
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 888888888776654 48888888887765333333333
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.63 E-value=2.3 Score=43.30 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKV--KAD--FVVWGSLLGA 468 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~ll~~ 468 (644)
+-..+..++-+.|+.++|.+.|.++.+++.......+...|+..|...+.+.++..++.+... -|. ...|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566677788999999999999987644333455777899999999999999999988741 233 3466665544
Q ss_pred HHhcCCh---------------hHHHHHHHHhhccCCCCc
Q 006457 469 CRIHKNV---------------DLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 469 ~~~~g~~---------------~~a~~~~~~~~~~~p~~~ 493 (644)
.+..++. ..|.++..++.+.+|..+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4444331 235678888888887754
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.52 E-value=0.28 Score=39.81 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC-CCC---chhHHHHHHHHhhcCC
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE-PNN---CGYHVLLSNIYANAGR 508 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 508 (644)
-+++..|+++.|++.|.+. .. +.+...||.-..+++-+|+.++|+.-+++++++. |.. ...|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999988876 22 2367788999999999999999999999999875 332 2457777888999999
Q ss_pred chHHHHHHHHHhhCCC
Q 006457 509 WEDVERTRSLMKNRRL 524 (644)
Q Consensus 509 ~~~a~~~~~~m~~~~~ 524 (644)
-+.|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877664
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=2.2 Score=40.43 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=84.5
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGS---LLGACRIHKNVD 476 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 476 (644)
.....|+..++...|+..... .+-+...--.|+..|...|+.+.|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456678888888888887542 222356666788888899999999999998875443333333 223333333333
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+... ++.-...+|+|...-..|+..|...|+.++|.+.+-.+.++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3322 334456789999999999999999999999999888776554
No 242
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.44 E-value=3.9 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=25.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~ 479 (644)
+...|.+.|.+..|..-++.+ ..-|+ ...+..++.++...|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 556677777777776666554 11122 224555667777777666443
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.31 E-value=0.19 Score=46.52 Aligned_cols=111 Identities=9% Similarity=0.131 Sum_probs=77.6
Q ss_pred HHHHHhhcC--CCCCcchHHHHHHHHHcC-----CCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccC----------
Q 006457 25 LTTLFNKYV--DKNNVFSWNSVIADLARG-----GDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALH---------- 87 (644)
Q Consensus 25 A~~~f~~~~--~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------- 87 (644)
.+..|...+ .+ |-.+|-+.+..+... +..+-....+..|.+.|+.-|..+|+.||+.+-+..
T Consensus 53 ~e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 345566665 45 777888888877543 456666777888999999999999999998775432
Q ss_pred ------CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh-HHHHHHHhhCCC
Q 006457 88 ------DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGEL-SDARKLFDEIPQ 136 (644)
Q Consensus 88 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 136 (644)
.-.-+..++++|...|+.||..+-..|++++.+.+-. .+..++.-.|+.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2234677888888888888888888888888776643 344444444543
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.27 E-value=6.3 Score=39.39 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---C----HhHHHHHHHHHHH---CCChhHHHHHHHHhHHcCCCCCChhhHHH
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMIEK---D----AVTWNSIIAIYAQ---NGLAAEALDVFDQMVKSTDVKCNAVTLSA 295 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 295 (644)
.-.|+-.|....+++...++.+.+... + ...--...-++.+ .|+.++|++++..+. .....++..|+..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHH
Confidence 334555688889999999999988553 1 1222233445566 789999999998865 4556677778777
Q ss_pred HHHHH
Q 006457 296 VLLAI 300 (644)
Q Consensus 296 ll~a~ 300 (644)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.22 E-value=0.071 Score=32.29 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.21 E-value=0.85 Score=38.29 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=40.4
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 436 LLGRAGKLKEAYDLIEGM----KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
...+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.++++|.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 344677888888777776 2222 223445577888888888888888888888887765
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.21 E-value=9.9 Score=43.12 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=8.4
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 006457 436 LLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~ 453 (644)
+|..+|+|.+|+.+-.++
T Consensus 974 a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHhccHHHHHHHHHhh
Confidence 344444444444444444
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=93.97 E-value=2.3 Score=43.14 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------ccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhh
Q 006457 372 AREALDLFYKMIK-AGVRPNYI-TFVSVLSACS---------HAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGR 439 (644)
Q Consensus 372 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 439 (644)
.+.|+.+|.+... ..+.|+.. .|..+..++. ......+|.++-++..+ +.| |......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4567777887771 22455533 3333222221 12234556666665533 444 57777777777788
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH--HHHHHHhhcCCchHHHHH
Q 006457 440 AGKLKEAYDLIEGM-KVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV--LLSNIYANAGRWEDVERT 515 (644)
Q Consensus 440 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~ 515 (644)
.|+++.|...|++. ...||. .+|......+...|+.++|.+.+++.++++|.....-+ ..+++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999987 456653 46666667777899999999999999999997644333 3334565554 5666666
Q ss_pred H
Q 006457 516 R 516 (644)
Q Consensus 516 ~ 516 (644)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 5
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=1.7 Score=41.69 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HH--HHHHHHHHccCCHHHH
Q 006457 338 CGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI--TF--VSVLSACSHAGLVQEG 410 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~--~~ll~a~~~~g~~~~a 410 (644)
.|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++..-. ..||.. +| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 25555555555566666655555555555432 122221 11 1122233445566666
Q ss_pred HHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 411 WHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 411 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.+.-++.. .+.| |.-...++...+...|+..++.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 55555442 2333 3334444555555566666666665544
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.91 E-value=1 Score=46.43 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHK 473 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 473 (644)
...++.-+.+.|.++.|+++-..-.. -.++..++|+++.|.++.++.. +...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 45555556666666666555332211 1344456666666666655543 5556666666666666
Q ss_pred ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 474 NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+++.|++.+++.- -+..|+-+|...|+-+.-.++-+....+|
T Consensus 362 ~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6666666666642 24445555666666555555554444443
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.87 E-value=5.2 Score=36.77 Aligned_cols=196 Identities=16% Similarity=0.089 Sum_probs=116.5
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHH-HH
Q 006457 292 TLSAVLLAIAHLGVLRLGKCIHDQVIKM-DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN-VRSWTAMIA-GY 366 (644)
Q Consensus 292 t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~ 366 (644)
.+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+..... ++ ......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3333344444444444444444444331 2223333444455555555566666666665553 11 122222333 67
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcC
Q 006457 367 GMHCRAREALDLFYKMIKAGVRP----NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAG 441 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 441 (644)
...|+++.|...|.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...+
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcc
Confidence 778888888888888755 233 233344444446677888888888888754 2223 3667777788888888
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 442 KLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 442 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
.+++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888776 33444 445555555555667788899999998888886
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.87 E-value=3.6 Score=34.90 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
.+|..+.+.+.......+++.+... +....|.++..|++.+ ..+.++.++. .++......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4455555555555555555554432 2334555555555542 2233333331 1223333345555555555
Q ss_pred HHHHHHHHHHH
Q 006457 407 VQEGWHWLNTM 417 (644)
Q Consensus 407 ~~~a~~~~~~~ 417 (644)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.85 E-value=0.12 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56667777777888888888888888877764
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.77 E-value=3.8 Score=34.78 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCC
Q 006457 77 PCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 77 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 156 (644)
..++..+...+.......+++.++..+ ..+...++.++..|++.. ..+....++. . .+......+++.+.+.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K--SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--cccCCHHHHHHHHHHcCc
Confidence 344444444445555555555555544 244555666666665542 2333334432 1 233444445555555555
Q ss_pred hhHHHHHHHHh
Q 006457 157 AREALLLFKEF 167 (644)
Q Consensus 157 ~~~A~~~~~~m 167 (644)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55665555554
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.56 E-value=6.3 Score=36.69 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAG-VR-PNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
.|-.=+..-.+.|++++|.+.|+.+...- .. -...+...++.++-+.+++++|+..+++..+.++-.|+.. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 34344444556677777777777777542 11 1344566666677777777777777777766655555543 333333
Q ss_pred HHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc-----------------hhHH
Q 006457 436 LLGRAGKLKEAYDLIEGMKV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC-----------------GYHV 497 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~ 497 (644)
+++ .|...+. .-|. .-...|...++.+++..|++. ..-.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 333 1111110 0011 011234444444455555542 2334
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+++-|.+.|.|..|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 6778899999999999999999875
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.78 Score=43.80 Aligned_cols=159 Identities=10% Similarity=-0.026 Sum_probs=115.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHH----HHHHhhcCCH
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCM----VDLLGRAGKL 443 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 443 (644)
-+|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888999999999876 577888888888999999999999999998865 345666555443 4455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC----CchhHHHHHHHHhhcCCchHHHHHHH
Q 006457 444 KEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN----NCGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 444 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
++|++.-++. .+.| |...-.++.......|+..++.+..++-...-.. -...|-..+-.+...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998876 4443 4445566777778889999999888776443221 12344455556777899999999998
Q ss_pred HHhhCCCcCCCc
Q 006457 518 LMKNRRLAKTPG 529 (644)
Q Consensus 518 ~m~~~~~~~~~~ 529 (644)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444544443
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=0.9 Score=42.46 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAG----VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCM 433 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 433 (644)
|+.-+..| +.|++.+|...|...++.. ..||. +-.|..++...|+++.|..+|..+.++++-.|. ++.+--|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 55544433 3456777777777776642 12233 333666777777777777777777665555444 3555556
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 006457 434 VDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~ 453 (644)
.....+.|+.++|...|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666655
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.11 E-value=4.9 Score=42.18 Aligned_cols=158 Identities=14% Similarity=0.114 Sum_probs=98.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHH----ccCCHHHHHHHHHHHhhhcCCCCChhHH
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAG-VRPNY-----ITFVSVLSACS----HAGLVQEGWHWLNTMGHEFNIEPGVEHY 430 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 430 (644)
.++....-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444555566666666666554422 11111 12333333332 245678888888888553 4665555
Q ss_pred HHH-HHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH-HHHHH
Q 006457 431 GCM-VDLLGRAGKLKEAYDLIEGMKV------KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV-LLSNI 502 (644)
Q Consensus 431 ~~l-i~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~ 502 (644)
... ...+...|++++|.+.|++.-. +-....+--+...+....++++|...+.++.+.+.-+...|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 433 4566778999999999986521 112334444556677888999999999999987655444444 45556
Q ss_pred HhhcCCc-------hHHHHHHHHHhh
Q 006457 503 YANAGRW-------EDVERTRSLMKN 521 (644)
Q Consensus 503 ~~~~g~~-------~~a~~~~~~m~~ 521 (644)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6788888 888888887753
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.09 E-value=2.5 Score=35.54 Aligned_cols=112 Identities=11% Similarity=-0.035 Sum_probs=54.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRP---NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG 441 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (644)
...+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++-+--.|+ .-|...+.+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 344556666666666666553 111 2234455666666666666666666666543222222 22333333332222
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 442 KLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 442 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
..+.++.-+- ..+ +..+....|...|+++++..|++.
T Consensus 97 ~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2111111111 111 111234577788888888888864
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.01 E-value=5.7 Score=41.11 Aligned_cols=159 Identities=11% Similarity=0.053 Sum_probs=99.1
Q ss_pred HHHHhCCChhHHHHHHHH-hHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHH
Q 006457 149 TGYVQNDNAREALLLFKE-FLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGN 227 (644)
Q Consensus 149 ~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 227 (644)
....-.++++++.++.+. -. ...++ ..-...+++-+.+.|..+.|.++-. |+ .
T Consensus 269 k~av~~~d~~~v~~~i~~~~l------------l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~ 322 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNL------------LPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---D 322 (443)
T ss_dssp HHHHHTT-HHH-----HHHHT------------GGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---H
T ss_pred HHHHHcCChhhhhhhhhhhhh------------cccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---H
Confidence 445557888887777762 11 11222 3346667777777888888777632 32 2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHH
Q 006457 228 TLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLR 307 (644)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~ 307 (644)
.-.+...++|+++.|.++-++.. +...|..|.....++|+++-|.+.|.+.. | +..++-.+...|+.+
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d---~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-------D---FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HH
T ss_pred HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------C---ccccHHHHHHhCCHH
Confidence 33456678999999999887765 56799999999999999999999998875 1 455666677778877
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 308 LGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 308 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
.-.++.......| -+|....++...|++++..+++.+.
T Consensus 391 ~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 391 KLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7777776666655 2344444555567777777666543
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.87 E-value=4.1 Score=33.48 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=64.9
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---------------------CCCHhHH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---------------------EKDAVTW 257 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------------~~~~~~~ 257 (644)
.-.|..+++.++.....++. +..-+|.+|--....-+-+...++++.+- ..+....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHH
Confidence 34577888888888777653 33334444333333333333333333321 1122334
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCC
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDL 321 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 321 (644)
...+......|+-++-.+++.++. . +-.+++.....+..||.+.|+..++.+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~-k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELK-K-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHh-h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 455667777788777777777775 3 4566777777888888888888888888888877774
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.56 E-value=2.8 Score=42.77 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhccCCC--CchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCC
Q 006457 463 GSLLGACRIHKNVDLGEIAAKKLFELEPN--NCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTP 528 (644)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 528 (644)
..|...+.+.|..++|.+.++.+++..|. +...+..|+..+...+++.++..++.+-.+..+++..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 44556666777777777777777766554 3446666777777777777777777766544444443
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.45 E-value=4.6 Score=35.16 Aligned_cols=134 Identities=12% Similarity=0.120 Sum_probs=83.5
Q ss_pred HHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC--CChHHHHHHHhhCC
Q 006457 58 LRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKC--GELSDARKLFDEIP 135 (644)
Q Consensus 58 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~ 135 (644)
++.++.+.+.+++|+...+..+++.+.+.|.+.... .++..++-+|.......+-.+... .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345566667888888889999999998888765443 344455555544333333222211 11344555565555
Q ss_pred CCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHH
Q 006457 136 QRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI 215 (644)
Q Consensus 136 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 215 (644)
. .+..++..+...|++-+|+++.+... . .+...-..++.+....+|...--.++....
T Consensus 90 ~------~~~~iievLL~~g~vl~ALr~ar~~~------------~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 T------AYEEIIEVLLSKGQVLEALRYARQYH------------K----VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred h------hHHHHHHHHHhCCCHHHHHHHHHHcC------------C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 57778888899999999999988742 1 222334556777777777666666666655
Q ss_pred Hh
Q 006457 216 KR 217 (644)
Q Consensus 216 ~~ 217 (644)
..
T Consensus 148 ~~ 149 (167)
T PF07035_consen 148 ER 149 (167)
T ss_pred Hh
Confidence 43
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=8.8 Score=35.35 Aligned_cols=199 Identities=14% Similarity=0.065 Sum_probs=93.0
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhhHHHHHHHHHhcC
Q 006457 293 LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN--VRSWTAMIAGYGMHC 370 (644)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 370 (644)
|-....+|....++++|..-+....+. ...+...|. ....++.|..+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444555666666666655554431 111111111 1122344444444444322 223445556666667
Q ss_pred CHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 371 RAREALDLFYKMIK--AGVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 371 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
.++.|-..+++.-+ .++.|+.. .|..-+......++...| .+.+..+...|.+..++++|
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 66666555554432 12334321 122222222222222222 23344445566666777776
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhcc----CCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 447 YDLIEGMK-------VKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFEL----EPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 447 ~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
-..|.+-. .-|+. ..+-+.|-.+.-..|+..|+..++.--++ .|++..+...|+.+| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 66555432 11121 12334444445555777777777765443 355666666666654 5566676665
Q ss_pred HH
Q 006457 515 TR 516 (644)
Q Consensus 515 ~~ 516 (644)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=11 Score=36.02 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=75.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCH
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKL 443 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 443 (644)
.....|++.+|..+|+...+.. +-+......+..++...|+++.|..++..+-.+ ..-+ .....+-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence 3455667777777777766542 222344455666777777777777777665221 1111 11112234445555544
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC--CCCchhHHHHHHHHhhcCC
Q 006457 444 KEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE--PNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 444 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 508 (644)
.+..++-++.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...--.|..++.-.|.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444443344 44455556666677777777766665555543 2344555555555555553
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.33 E-value=0.4 Score=42.16 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=67.0
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 436 LLGRAGKLKEAYDLIEGM-K-VKA-----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
-+.+.|++++|..-|... . .+| ..+.|..-..+..+.+.++.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 455677777777766654 1 111 234455555677888999999999999999999888888888889999999
Q ss_pred chHHHHHHHHHhhCC
Q 006457 509 WEDVERTRSLMKNRR 523 (644)
Q Consensus 509 ~~~a~~~~~~m~~~~ 523 (644)
+++|++-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988654
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.13 E-value=4.9 Score=34.58 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=61.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMK-VKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~ 475 (644)
++.-...++.+++..+++.+. -+.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-..|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 344456778899999998883 466753 233333556788999999999999984 334445556777777666555
Q ss_pred hHHHHHHHHhhccCCC
Q 006457 476 DLGEIAAKKLFELEPN 491 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~ 491 (644)
..-....+++++..|+
T Consensus 94 ~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD 109 (160)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 5566666777776654
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=8.5 Score=41.86 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=88.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 006457 293 LSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVI--VGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHC 370 (644)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 370 (644)
...-|....+...++.|..+-. ..+..++.. ......+-+.+.|++++|..-|-+...--.. ..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 4444555555555555544332 222222211 1122233344567777777666543321111 22455556666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIE-PGVEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
+..+-..+++.+.+.|+.- ...-+.||.+|.+.++.+.-.++.+.-- + |.. -| ....+..+.+.+-+++|.-+
T Consensus 412 ~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHHHHHH
Confidence 6666667777777777543 3333457777777777777666655431 1 111 12 23345566666667777666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 450 IEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 450 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
-.+.+. .......+ +...+|+++|.+.++.
T Consensus 486 A~k~~~--he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 655543 22222222 2345667777666654
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.62 E-value=9.7 Score=40.01 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHhcCCHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVG-TSIIDMYCKCGQVDLARKAFNQMKEK-------NVRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A 375 (644)
...+.+.+++..+.+.= |+...| -.-...+...|++++|.+.|++.... ....+--+.-.+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34556666666665532 332222 22344555667777777777654321 112233344445556666666
Q ss_pred HHHHHHHHHc
Q 006457 376 LDLFYKMIKA 385 (644)
Q Consensus 376 ~~~~~~m~~~ 385 (644)
.+.|.++.+.
T Consensus 325 ~~~f~~L~~~ 334 (468)
T PF10300_consen 325 AEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhc
Confidence 6666666653
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.47 E-value=14 Score=35.71 Aligned_cols=16 Identities=19% Similarity=-0.201 Sum_probs=8.8
Q ss_pred HHhcCChhHHHHHHHH
Q 006457 469 CRIHKNVDLGEIAAKK 484 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~ 484 (644)
+.+.++++.|...|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3455566666665553
No 271
>PRK15331 chaperone protein SicA; Provisional
Probab=91.40 E-value=4.2 Score=35.10 Aligned_cols=19 Identities=16% Similarity=-0.186 Sum_probs=8.4
Q ss_pred HHHHhhcCCHHHHHHHHHh
Q 006457 434 VDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~ 452 (644)
...|...|+.+.|+..|..
T Consensus 112 gqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 3344444444444444443
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=12 Score=34.56 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCH---HHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR--PNY---ITFVSVLS 399 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~---~t~~~ll~ 399 (644)
+..|+--..+|..+|..+.|-..+++.-+ ...+-++++|+++|++...-=.. -+. ..+..+-+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 34566677789999998888777665321 12344677777777775532001 111 12333444
Q ss_pred HHHccCCHHHHHHHHHHHhh---hcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CC-CCHHHHHHHHHHH
Q 006457 400 ACSHAGLVQEGWHWLNTMGH---EFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM---K--VK-ADFVVWGSLLGAC 469 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~--~~-p~~~~~~~ll~~~ 469 (644)
.+.+...+++|-..|.+-.. ...--|+ -..|-+.|-.|.-..++..|...++.. + .. .+..+...||.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 55566666666555543310 0111122 233555666677788999999999984 2 12 2556788888887
Q ss_pred HhcCChhHHHHHHH
Q 006457 470 RIHKNVDLGEIAAK 483 (644)
Q Consensus 470 ~~~g~~~~a~~~~~ 483 (644)
..||.++...++.
T Consensus 239 -d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLS 251 (308)
T ss_pred -ccCCHHHHHHHHc
Confidence 4567777666543
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.09 E-value=9.6 Score=34.41 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=26.0
Q ss_pred chhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 493 CGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..+|.-|++-|...|+.++|..+|+.....
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 368889999999999999999999987753
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.90 E-value=19 Score=36.14 Aligned_cols=148 Identities=9% Similarity=-0.067 Sum_probs=75.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhh-cCCCCChhHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP---NYITFVSVLSACSHAGLVQEGWHWLNTMGHE-FNIEPGVEHY 430 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 430 (644)
...+|..++..+.+.|+++.|...+.++...+..+ ++.....-....-..|+.++|...++..... ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44578888888888888888888888877643111 2233333444555667778888777776551 1111111111
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 431 GCMVDLLGRAGKLKEAYDL-IEGMKVKADFVVWGSLLGACRI------HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
..+...+.. ..+..... ........-...+..+..-+.. .++.+.+...|+++.++.|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 0000000001122222222223 37788899999999999998877777777655
Q ss_pred h
Q 006457 504 A 504 (644)
Q Consensus 504 ~ 504 (644)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 3
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.56 E-value=10 Score=36.83 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHccCC--HHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006457 373 REALDLFYKMIKAGVRPN-Y-ITFVSVLSACSHAGL--VQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 373 ~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 436 (644)
+.+...|+.+.+.|+..+ . .....+|..+..... +.++.++++.+.+ .|+++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 456677788887777653 3 333334433322222 3467778888855 5888888777766543
No 276
>PRK09687 putative lyase; Provisional
Probab=90.17 E-value=19 Score=34.87 Aligned_cols=237 Identities=11% Similarity=-0.008 Sum_probs=130.1
Q ss_pred hcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCc----HHHHHHHHHHHHhCCCC
Q 006457 31 KYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDL----HSGKQAHQQAFIFGFHR 106 (644)
Q Consensus 31 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~ 106 (644)
.+... |.......+.++...|. .+++..+..+.. .+|...=...+.+++..|+. ..+..++..+... .+
T Consensus 31 ~L~d~-d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 31 LLDDH-NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred HHhCC-CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 33444 77677777788877775 555555555554 23555555666777777763 3455556555332 56
Q ss_pred ChhHHHHHHHHHHhCCCh-----HHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCC
Q 006457 107 DVFVSSALIDMYSKCGEL-----SDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENS 181 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 181 (644)
+..+-...+.++...+.. ..+...+...... ++...--..+.++.+.++ ..++..+-.+. .
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L------------~ 169 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD-KSTNVRFAVAFALSVIND-EAAIPLLINLL------------K 169 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC-CCHHHHHHHHHHHhccCC-HHHHHHHHHHh------------c
Confidence 777777777777665432 2334444333221 444455566677777776 56777777665 2
Q ss_pred CCccCCHhhHHHHHHHhhcCCC-chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHH
Q 006457 182 DNVFVDSVAIASVLSACSRVTV-NGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSI 260 (644)
Q Consensus 182 ~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 260 (644)
.+|...-...+.+++..+. ...+...+..+. -.++..+-...+.++++.|+.+..-.+.+.+..++ ..-..
T Consensus 170 ---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a 241 (280)
T PRK09687 170 ---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLI 241 (280)
T ss_pred ---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHH
Confidence 2444444444555554421 222333332222 35566677777777777777443333444444433 23355
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHH
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI 300 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 300 (644)
+.++...|.. +|+..+..+. . -.||...-...+.+|
T Consensus 242 ~~ALg~ig~~-~a~p~L~~l~-~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 242 IEAAGELGDK-TLLPVLDTLL-Y--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHhcCCH-hHHHHHHHHH-h--hCCChhHHHHHHHHH
Confidence 6666677664 5666666665 2 233555544444444
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.08 E-value=0.41 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666777777777777777777777764
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.91 E-value=2.3 Score=40.44 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIK-----AGVRPNYITFVSV 397 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 397 (644)
.++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35667888888888888888888887643 667888999999999999999888888765 4666766655544
Q ss_pred HHH
Q 006457 398 LSA 400 (644)
Q Consensus 398 l~a 400 (644)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.90 E-value=20 Score=35.12 Aligned_cols=216 Identities=10% Similarity=0.022 Sum_probs=125.1
Q ss_pred CCchHHHHHHHHHHHh--CCCCCccHHHHHHHHHHhcCCHHHHHHHHh-cC------CCC--CHhHHHHHHHHHHHCCCh
Q 006457 202 TVNGVTEGAHGFVIKR--GFDSEVGVGNTLIDAYARGGHVDVSRKVFD-GM------IEK--DAVTWNSIIAIYAQNGLA 270 (644)
Q Consensus 202 ~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~------~~~--~~~~~~~li~~~~~~g~~ 270 (644)
.+.+.+.+.+...... ....-..++..+..+.++.|.+++++..-- .| .+. -..+|-.+..++-+--++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555443321 111123456677778888888877764321 11 111 234566666677666677
Q ss_pred hHHHHHHHHhHHcCCCCCC---hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHH
Q 006457 271 AEALDVFDQMVKSTDVKCN---AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE-----ESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~ 342 (644)
.+++.+-+.-....|..|. -....++..++...+.++++.+.|+...+.... ....++-+|...|.+..+++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 7777766554423344442 123344667777888899998888887663211 23457788888899988888
Q ss_pred HHHHHHHhc-------CCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcc
Q 006457 343 LARKAFNQM-------KEKNVR------SWTAMIAGYGMHCRAREALDLFYKMIK----AGVRPN-YITFVSVLSACSHA 404 (644)
Q Consensus 343 ~A~~~~~~~-------~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~ 404 (644)
+|.-+..+. .-.|.. +...|.-++...|+..+|.+.-++..+ .|-+|- ......+...|...
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 876544332 223332 223345567777777777777766543 342221 22344555667777
Q ss_pred CCHHHHHHHHHHH
Q 006457 405 GLVQEGWHWLNTM 417 (644)
Q Consensus 405 g~~~~a~~~~~~~ 417 (644)
|+.+.|+.-|+..
T Consensus 260 gd~e~af~rYe~A 272 (518)
T KOG1941|consen 260 GDLERAFRRYEQA 272 (518)
T ss_pred ccHhHHHHHHHHH
Confidence 8888877766655
No 280
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.82 E-value=7.8 Score=31.83 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=23.2
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 335 YCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
.+..|+++.|.+.|.+... .+...||.-..++.-.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555544331 2344445444555445555555444444443
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.18 E-value=1.5 Score=37.69 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=31.7
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..+++.+.++.++.-+.-+.|..+..-..-++.+...|+|.+|.++++.+.+++
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344555566666666655666666655566666666666666666666654443
No 282
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.16 E-value=68 Score=39.90 Aligned_cols=279 Identities=14% Similarity=0.089 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc-CCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHHcc
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDG-MIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHL 303 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~ 303 (644)
+-.+...|+..+++|...-+... ..+++. ..-|.-....|++..|...|+.+. +..|+ ..+++.++......
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~~---q~~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERLI---QKDPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHhh---cCCCccccchhhHHHhhhcc
Confidence 34444567777777666655552 222222 223444566778888888888876 33444 55666666666666
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH-H-HHHHhcC--CHHHHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIV-GTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAM-I-AGYGMHC--RAREALDL 378 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~ 378 (644)
+.++......+-..... .+.... ++.=+.+--+.++++....... ..+..+|.+. + ....+.. +.-.-.++
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~ 1572 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDL 1572 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHH
Confidence 66665554333332221 222222 2222334456666666666555 4555666555 2 2222211 11111223
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----------HHhhhcCCCCC------hhHHHHHHHHHhhcCC
Q 006457 379 FYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN----------TMGHEFNIEPG------VEHYGCMVDLLGRAGK 442 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~~~~~~~~~p~------~~~~~~li~~~~~~g~ 442 (644)
.+.+++.-+.| +.+|+..|.+..+.++.- ......+..++ ...|..-+..-....+
T Consensus 1573 i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~ 1644 (2382)
T KOG0890|consen 1573 IENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFR 1644 (2382)
T ss_pred HHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHH
Confidence 33333221111 122222222111111111 11111123332 2222222221111112
Q ss_pred HHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 443 LKEAYDLIEGM----KVKA-----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 443 ~~~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
..+-.--+++. ...| -..+|......++..|.++.|..+.-++.+..+ +..+...+......|+...|.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHH
Confidence 22221112211 1222 245899999999999999999999988888775 468999999999999999999
Q ss_pred HHHHHHhhCCC
Q 006457 514 RTRSLMKNRRL 524 (644)
Q Consensus 514 ~~~~~m~~~~~ 524 (644)
.+++...+...
T Consensus 1723 ~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1723 SVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHhhc
Confidence 99999886554
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.11 E-value=9.4 Score=33.93 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC------hhH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG------VEH 429 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 429 (644)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..++..-.....| ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34445555555555555555555555543333322 3444555555555665555555554321111111 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
|..|. +...|++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.98 E-value=0.96 Score=27.75 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666667777777777777777644
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.66 E-value=21 Score=33.37 Aligned_cols=182 Identities=11% Similarity=0.028 Sum_probs=108.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVS 396 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 396 (644)
|-...|+.-+. -.+.|++++|.+.|+.+.... ..+--.++-++-+.+++++|+..+++....-..-...-|..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 44455554444 457899999999999998532 23455567788899999999999999887432222233444
Q ss_pred HHHHHHc---c----CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHH
Q 006457 397 VLSACSH---A----GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVW--GSLLG 467 (644)
Q Consensus 397 ll~a~~~---~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~ 467 (644)
.|.+.+. . .+...+.+-|..+. .+|.-|=.+.--.+|..-+.... |.... .++..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~-------------~~i~ryPnS~Ya~dA~~~i~~~~---d~LA~~Em~Iar 175 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFK-------------ELVQRYPNSRYAPDAKARIVKLN---DALAGHEMAIAR 175 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHH-------------HHHHHCCCCcchhhHHHHHHHHH---HHHHHHHHHHHH
Confidence 4444432 1 22222333332221 11222222222222322222221 11111 23457
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCCc---hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNNC---GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
-|.+.|.+..|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 78899999999999999998766544 4556677789999999999988776653
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.48 E-value=7 Score=38.01 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--C----CChHHHHHHHhhCCCC-----CCCeecHHHHHHHHHhCCCh
Q 006457 89 LHSGKQAHQQAFIFGFHRDVFVSSALIDMYSK--C----GELSDARKLFDEIPQR-----IRNIVSWTSMLTGYVQNDNA 157 (644)
Q Consensus 89 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~ 157 (644)
+.....+++.+++.|+..+.++|-+....... . -...+|..+|+.|.+. .++-.++..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888888888877766654333332 1 1345677888888776 3345556666544 23332
Q ss_pred ----hHHHHHHHHhHhhhhccCCCCCCCCCccCC--HhhHHHHHHHhhcCCCch--HHHHHHHHHHHhCCCCCccHHHHH
Q 006457 158 ----REALLLFKEFLLEESECGGASENSDNVFVD--SVAIASVLSACSRVTVNG--VTEGAHGFVIKRGFDSEVGVGNTL 229 (644)
Q Consensus 158 ----~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~--~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l 229 (644)
+.+..+|+.+. ..|...+ ....+.+|..+....... .+..+++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~------------~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLA------------DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHH------------HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44556666665 4455442 234444554444433333 556666677777776665555443
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.43 E-value=17 Score=36.42 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC----CCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP----NNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
...+|..+...++++|+++.|...+.++...++ ..+.....-++.....|+-++|.+.++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999988652 2456777778999999999999999988877433
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.09 E-value=0.66 Score=28.49 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
|..|...|...|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=44 Score=36.41 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=37.7
Q ss_pred HHHHHhcCCchHHHHHHhhcCCCCC----cchHHHHHHHHHcCCCchHHHHHHHHhhH
Q 006457 13 VSNVDKHSTNTNLTTLFNKYVDKNN----VFSWNSVIADLARGGDSVEALRAFSSMRK 66 (644)
Q Consensus 13 ~~~~~~~~~~~~A~~~f~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 66 (644)
+..+.+.+.+++|+..-+.-+..+. ...+-..|..+...|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 4556777888888888776554321 23577788888888888888777777654
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.89 E-value=47 Score=36.53 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=35.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
++..+....+.+.+..+.+..+.. ++..|..++..+.+.+..+.-.+...+.++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 344455566777777777776533 777888888888888766655555555443
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.46 E-value=0.96 Score=43.32 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=80.2
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-VK-ADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~ 475 (644)
+-|.+.|.+++|+..|...+ .+.| +..++..-..+|.+..++..|+.-.+..- .. .-.-.|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998763 4567 88888888889999999988876655441 11 0122444445555567889
Q ss_pred hHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 476 DLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
.+|.+-++.+++++|++. -|-..|++.....++.-+.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~Ks 220 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATKS 220 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhhc
Confidence 999999999999999853 455556666666665544443
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.30 E-value=1.9 Score=36.27 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=40.3
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..++.+.++.++.-+.-+.|+.+..-..-++.+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777777777777777777777777777777888888888888887777655
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.39 E-value=2.2 Score=27.59 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
+|..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3555566666666666666666666653
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.09 E-value=15 Score=32.01 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=23.3
Q ss_pred hhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 438 GRAGKLKEAYDLIEGMKVKAD---FVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.-.|.+++...-.+.+....+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555555544421111 12233444444555556555555555544
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.93 E-value=28 Score=31.99 Aligned_cols=23 Identities=4% Similarity=-0.139 Sum_probs=13.2
Q ss_pred HhcCChhHHHHHHHHhhccCCCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
...+++.+|..+|+++-...-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34556666777766665544333
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.92 E-value=1.7 Score=25.99 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777777777777777766
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.52 E-value=12 Score=39.26 Aligned_cols=149 Identities=15% Similarity=0.059 Sum_probs=102.5
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 006457 337 KCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
-.|+++.|..++-.++++ .-+.++.-+.+.|-.++|+++ .+|+. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 457788887777666632 334556666777777777754 33333 2222 346789999988766
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+....|..
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 55 346679999999999999999999998764 3567777777888877665666655555554422
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHH
Q 006457 496 HVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
-.+|...|++++..+++..-
T Consensus 728 ----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHHhc
Confidence 23567889999998887543
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.34 E-value=7.8 Score=34.44 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=68.1
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCC--cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC-Ch------h
Q 006457 39 FSWNSVIADLARGGDSVEALRAFSSMRKLSLTPT--RSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHR-DV------F 109 (644)
Q Consensus 39 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~------~ 109 (644)
..+..+..-|.+.|+.+.|++.|.++.+....|. ...+-.+|+.+.-.+++..+......+...--.+ |. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4678888999999999999999999988654443 3356777888888889988888777766542222 22 2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCC
Q 006457 110 VSSALIDMYSKCGELSDARKLFDEIPQR 137 (644)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 137 (644)
+|..|.. ...+++..|-+.|-.....
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 2333332 3458999999888777654
No 299
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=10 Score=36.27 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=68.2
Q ss_pred hCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCC
Q 006457 217 RGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE-K--------DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVK 287 (644)
Q Consensus 217 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 287 (644)
.|.+....+...++..-....+++++...+-.+.. + ..++|--++. .=++++++.++..=. +.|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npI-qYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPI-QYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcc-hhccc
Confidence 35555566666777777777778888777665522 1 3334433333 235678888877777 78888
Q ss_pred CChhhHHHHHHHHHccccHHHHHHHHHHHHHhC
Q 006457 288 CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD 320 (644)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 320 (644)
||.+|+..+|..+.+.++...|.++...|+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888888777776544
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.30 E-value=4.3 Score=38.66 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445566666677777777777777777777777777777777777777777777777765
No 301
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.11 E-value=18 Score=28.18 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555543321 22222223445677899999999999988899999988754 4557777777777788777
Q ss_pred CCCCCHHHHHH
Q 006457 386 GVRPNYITFVS 396 (644)
Q Consensus 386 g~~p~~~t~~~ 396 (644)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 666666644
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.04 E-value=1.3 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.1
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHH
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888899888888765
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.42 E-value=9.8 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335666666677777889999999999999999999999999998854333 24456665554
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.31 E-value=1.8 Score=25.73 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=24.1
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998865
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.09 E-value=8.8 Score=29.96 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 374 EALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
+..+-+..+....+.|++....+.|.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555555666667889999999999999999999999999998866544 33336766654
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.77 E-value=39 Score=31.10 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=34.5
Q ss_pred HhhcCCHHHHHHHHHhCC---CCCCHHHHHH---HH--HHHHh-cCChhHHHHHHHHhhccCCCC
Q 006457 437 LGRAGKLKEAYDLIEGMK---VKADFVVWGS---LL--GACRI-HKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---ll--~~~~~-~g~~~~a~~~~~~~~~~~p~~ 492 (644)
-+..|++.+|.++|++.. ...+..-|.. ++ ..|.- ..|.-.+..++++-.+++|.-
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 346678888888887762 2222333322 11 23333 367777888889999999863
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.72 E-value=4.4 Score=38.59 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHCC---CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLS---LTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSA 113 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 113 (644)
.+.+-..++..-.+..+++.+...+-+++..- ..|+. +-.+.++.|.+ -+++.+..++..-+..|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 44555566666666677777877777666421 22222 22233333333 356677777777788888888888888
Q ss_pred HHHHHHhCCChHHHHHHHhhCCC
Q 006457 114 LIDMYSKCGELSDARKLFDEIPQ 136 (644)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~ 136 (644)
+|+.+.+.+++.+|.++.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888777666544
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.67 E-value=24 Score=30.00 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=48.7
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGV-EHYGCMVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
...++.+++..+++.|. -+.|+. ..-..-...+.+.|++++|..+|++....+ ....-..|+..|.....-..=.
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 34788888888888882 456652 222333455678899999999999885433 3333345555554433322233
Q ss_pred HHHHHhhcc
Q 006457 480 IAAKKLFEL 488 (644)
Q Consensus 480 ~~~~~~~~~ 488 (644)
....++++.
T Consensus 98 ~~A~~~le~ 106 (153)
T TIGR02561 98 VHADEVLAR 106 (153)
T ss_pred HHHHHHHHh
Confidence 333444443
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.28 E-value=84 Score=34.58 Aligned_cols=263 Identities=9% Similarity=0.006 Sum_probs=125.3
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHcc
Q 006457 224 GVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHL 303 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~ 303 (644)
..-..-+..+.+.++++...+.+..- ..+...-.....+....|+.++|.+..+.+- ..| .........++..+.+.
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW-~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELW-LTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccC-CCCChHHHHHHHHHHHc
Confidence 33444555667788888888844333 3455555667778888899888887777775 333 22345566677766655
Q ss_pred ccHHHHH--HHHHHHHHhCC-----------CCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHH--
Q 006457 304 GVLRLGK--CIHDQVIKMDL-----------EES-VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYG-- 367 (644)
Q Consensus 304 ~~~~~a~--~i~~~~~~~~~-----------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-- 367 (644)
|.+.... +=+..+...|- .++ ......++..+. +...+..++.... ++...-...+.++.
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 5433221 11111111110 111 111122222221 1222222222211 11111111112222
Q ss_pred hcCCHHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH
Q 006457 368 MHCRAREALDLFYKMIKA-GVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (644)
...+.+.|..++.+.... ++.+... ....+.......+...++...++.... ...+......-+..-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHH
Confidence 234557777777766433 2333222 223333323333224555666555422 1123444444455555777888
Q ss_pred HHHHHHHhCCCC-CCHHHHH-HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 445 EAYDLIEGMKVK-ADFVVWG-SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 445 ~A~~~~~~~~~~-p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
.+...|..|+.. .+..-|. =+..+....|+.++|...|+++.. +. ..|-.|+
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LA 383 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVA 383 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHH
Confidence 777777777411 1112222 234555557788888888777633 22 3555554
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.20 E-value=7.7 Score=29.94 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=45.9
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH-hCCCCChhHHHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFI-FGFHRDVFVSSALID 116 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~ 116 (644)
+.-++.+-++.+....+-|++....+.+++|.+.+++..|..+++-+.. .|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 4456667777777778889999999999999999999999999987763 332 3445655543
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.13 E-value=6.1 Score=38.12 Aligned_cols=86 Identities=16% Similarity=0.016 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 006457 363 IAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG 441 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (644)
..-|.++|.+++|++.|.+... +.| |.+++..-..||.+...+..|..-....+. .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4678999999999999998877 466 999999999999999888877766555532 1123455666554
Q ss_pred -------CHHHHHHHHHhC-CCCCCH
Q 006457 442 -------KLKEAYDLIEGM-KVKADF 459 (644)
Q Consensus 442 -------~~~~A~~~~~~~-~~~p~~ 459 (644)
...+|.+-++.. ..+|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 445554444433 356663
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.84 E-value=1e+02 Score=33.88 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCCh-------hHHHHHHHHhH
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNA-------REALLLFKEFL 168 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~ 168 (644)
+..+|- +|-.+.|+|++++|.++..+.... ......+-..+..|+...+. +....-|++..
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~ 179 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRI 179 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 344554 677788999999999999443332 23445667777777765322 34445555544
No 313
>PRK09687 putative lyase; Provisional
Probab=79.80 E-value=61 Score=31.36 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=28.8
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCCh----hHHHHHHHHh
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLA----AEALDVFDQM 280 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 280 (644)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344555555555555555433333333323344444444455555555542 3455555544
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.76 E-value=3.8 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCCchhH
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
.+.-++.+.|+++.|.+..+.+++.+|++..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355678899999999999999999999985443
No 315
>PRK10941 hypothetical protein; Provisional
Probab=79.72 E-value=12 Score=35.84 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..+.+-.++.+.++++.|..+.+.++.+.|+++.-+---+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556688899999999999999999999999988888899999999999999988877654
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.66 E-value=3 Score=26.19 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888899999999999999888754
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.51 E-value=8.6 Score=30.04 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=41.1
Q ss_pred chHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006457 54 SVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALID 116 (644)
Q Consensus 54 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (644)
.-+..+-++.+....+-|++....+.|++|.+.+++..|..+++-+...- .+....|..++.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33566666777777788888889999999999999999999888877542 233336666554
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.48 E-value=1.4 Score=26.63 Aligned_cols=24 Identities=0% Similarity=-0.036 Sum_probs=13.4
Q ss_pred CCcchhHHHHHHHHHhcCCchHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLT 26 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~ 26 (644)
|.++.+|..+...|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555555555555555555553
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.38 E-value=4.3 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666667777777776666553
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.32 E-value=1.6 Score=37.27 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=63.3
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCCh
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNA 157 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 157 (644)
.+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..+-+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-----~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-----NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-----SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-----cccCHHHHHHHHHhcchH
Confidence 456666677777788888888887776677888899999999998888888888733 224445677777888888
Q ss_pred hHHHHHHHHhH
Q 006457 158 REALLLFKEFL 168 (644)
Q Consensus 158 ~~A~~~~~~m~ 168 (644)
++|.-++.++.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 88888888764
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.31 E-value=2.6 Score=24.78 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=12.4
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
.++...|+.++|...++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444445555555555555554443
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.07 E-value=47 Score=29.69 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHH-----HHHHHhhcCCHHHH
Q 006457 374 EALDLFYKMIKAGVRPNYITFV--SVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGC-----MVDLLGRAGKLKEA 446 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 446 (644)
+.....+++....-....-++. .+...+...|++++|...++.... .|....+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555566666542122222222 334567788999999988887633 233334443 44567788999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 447 YDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 447 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
+..++....+. .......-...+...|+-++|+..|+++++.++++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99998764210 11122233477888999999999999999887543
No 323
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.02 E-value=92 Score=32.99 Aligned_cols=129 Identities=8% Similarity=0.156 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcC-CCCCcc-hHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHh
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYV-DKNNVF-SWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCS 84 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 84 (644)
..|..|++---...+++.++.+++.+. .-|... -|-....--.+.|..+.+.++|++-.. |++.+...|...+..+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence 345555555555556677788887765 345443 355555555688999999999999886 45556666666666554
Q ss_pred -ccCCcHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHhCCChHHHHHHHhhCCC
Q 006457 85 -ALHDLHSGKQAHQQAFIF-GFH-RDVFVSSALIDMYSKCGELSDARKLFDEIPQ 136 (644)
Q Consensus 85 -~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 136 (644)
..++.+..+..|+.++.. |.. .+...|...|..-..+++......+++++.+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 457788888888888764 322 2445677777777788899999999998887
No 324
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.75 E-value=1.2e+02 Score=34.00 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=98.8
Q ss_pred HhcCCHHHHHHHHHhcC----CCCh-------hhHHHHHHH-HHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 006457 336 CKCGQVDLARKAFNQMK----EKNV-------RSWTAMIAG-YGMHCRAREALDLFYKMIKA----GVRPNYITFVSVLS 399 (644)
Q Consensus 336 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 399 (644)
.-..++++|..+..+.. .++. ..|+++-.. ....|++++|+++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34667888877776543 3322 245555432 34467788888887776643 12233445555666
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHH---HH--HHHHhhcCCHHHH--HHHHHhC-----CCCC----CHHHHH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYG---CM--VDLLGRAGKLKEA--YDLIEGM-----KVKA----DFVVWG 463 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~l--i~~~~~~g~~~~A--~~~~~~~-----~~~p----~~~~~~ 463 (644)
+..-.|++++|..+.....+ ..-.-+...+. .+ ...+...|+...| +..|... +-+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66677888888877766533 12222333322 22 2234556633322 2223222 1122 122333
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcc----CCCCc---hhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcC
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFEL----EPNNC---GYHVLLSNIYANAGRWEDVERTRSLMKNRRLAK 526 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 526 (644)
.++.++.+ .+.+..-..+.+++ .|... ..+..|+.++...|+.++|...+..+..-....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 44444433 45555544444443 23221 122367888888899999988888887654433
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.23 E-value=3.7 Score=23.28 Aligned_cols=29 Identities=24% Similarity=0.088 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
|..+...+...|+++.|...+++.+++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444445555555555555554444
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.08 E-value=4.1 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=24.9
Q ss_pred hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 494 GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.49 E-value=1.6 Score=37.16 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=60.3
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHH
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEA 273 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 273 (644)
++..+.+.+.+....++++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666777778888888888888777667788889999999999888888888774432 3334566666777777777
Q ss_pred HHHHHHhH
Q 006457 274 LDVFDQMV 281 (644)
Q Consensus 274 ~~~~~~m~ 281 (644)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77766553
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.47 E-value=13 Score=33.45 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC-C---CchhHHHHHHHHhhcCCchHHH
Q 006457 444 KEAYDLIEGMKVKA--DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP-N---NCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 444 ~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~---~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
++|.+.|-.+.-.| +....-.-+..|....|.++++.++-+++++.+ + |+..+..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666663233 222333333444456677888888888877642 2 4677888888888888887764
No 329
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.35 E-value=21 Score=34.36 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHH
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYI---TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLL 437 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 437 (644)
+..+-.+.|+..+|.+.|+.+.+. .|-.. ....++.+|.....+.....++.+. .+...+.+ ...|++ ++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY-DdislPkSA~icYTa---AL 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY-DDISLPKSAAICYTA---AL 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCcchHHHHHHH---HH
Confidence 444455678888888888877653 23111 2334667776666665555555444 11122222 222322 11
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH
Q 006457 438 GRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
. ++..+-++ +.||..+-.-|-.+ --.|.++..++.+.+|.-|.+..
T Consensus 355 L------K~RAVa~k--Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 355 L------KTRAVSEK--FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred H------HHHHHHhh--cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHH
Confidence 1 12222222 24454333222222 12366777788888887655443
No 330
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.25 E-value=18 Score=36.73 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=62.3
Q ss_pred cCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 006457 369 HCRAREAL-DLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAY 447 (644)
Q Consensus 369 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (644)
.|+...|- +++.-+....-.|+.+.+.+.| +.+.|.++.+.+.+....+ -+.....+..+++....+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34444443 2333333333345555444443 4566777777666665532 34445556666777777777777777
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 448 DLIEGM---KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 448 ~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
..-..| .++ +..+...-.......|-++++...+++++.++|.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 666655 121 2222222223334455566666667776666654
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.24 E-value=88 Score=31.55 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=50.6
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHhhccCCC-CchhHHHHHHHHh-hcCCchHHHHHHHHHhh
Q 006457 458 DFVVWGSL---LGACRIHKNVDLGEIAAKKLFELEPN-NCGYHVLLSNIYA-NAGRWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 521 (644)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||..-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455544 46778899999999999999999998 8888888888775 67788878888777654
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.53 E-value=3.2 Score=24.38 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.4
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 495 YHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++..++.+|.+.|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998764
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.22 E-value=1.1e+02 Score=31.86 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=50.6
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 332 (644)
|....-+++..+.++-...-...+..+|. . ..-+...|..++..|... ..+.-..+++++++..+ .|+....-|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l-~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVL-E--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHH-H--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 33444556666666666666666666665 2 223555566666666655 44455556666665443 2333334455
Q ss_pred HHHHhcCCHHHHHHHHHhc
Q 006457 333 DMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~ 351 (644)
+.|-+ ++.+.+...|..+
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHHH-hchhhHHHHHHHH
Confidence 55544 5556665555554
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.18 E-value=5.6 Score=22.13 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=13.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 006457 431 GCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~ 451 (644)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666654
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.13 E-value=53 Score=30.87 Aligned_cols=177 Identities=11% Similarity=0.051 Sum_probs=104.5
Q ss_pred cCCHHHHHHHHHhcCC----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHccC
Q 006457 338 CGQVDLARKAFNQMKE----K---NVRSWTAMIAGYGMHCRAREALDLFYKMIK---AGVR--PNYITFVSVLSACSHAG 405 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~g 405 (644)
...+++|..-|++..+ + .......||..+.+.|++++-++.|.+|.. ..+. -+..+.++++...+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456777777766543 1 234556677788888888888888888763 1122 23456777777776666
Q ss_pred CHHHHHHHHHHHhhhc----CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--C-----CC-------CHHHHHHHHH
Q 006457 406 LVQEGWHWLNTMGHEF----NIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK--V-----KA-------DFVVWGSLLG 467 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-----~p-------~~~~~~~ll~ 467 (644)
+.+.-.++++.-.... +-..--.+-+.|...|...|.+.+-.+++.++. . .. -..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6665555555433211 111122333556677777777777777766551 0 00 1235555667
Q ss_pred HHHhcCChhHHHHHHHHhhccCCCC--chhHH----HHHHHHhhcCCchHHHH
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPNN--CGYHV----LLSNIYANAGRWEDVER 514 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~----~l~~~~~~~g~~~~a~~ 514 (644)
.|...++-..-..++++++.+...- |...- +=+.+..+.|+|++|..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 7777888888888888888765221 22211 22345567788888754
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.67 E-value=16 Score=24.84 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 496 HVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...++-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45677788999999999999999875
No 337
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=74.02 E-value=88 Score=30.22 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=14.4
Q ss_pred HHHhhcCCchHHHHHHHHH
Q 006457 501 NIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m 519 (644)
..+.+.++|++|.+.++..
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 3467788899998888754
No 338
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.83 E-value=1.8e+02 Score=33.74 Aligned_cols=254 Identities=8% Similarity=-0.045 Sum_probs=110.1
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Q 006457 244 KVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE 323 (644)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 323 (644)
.+...+.++|+..-...+..+.+.+. .++...+.... . .+|...-...+.++...+........+..+.+ .+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL-~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAAL-G---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHH-c---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 34444455566555555555555554 33444444443 1 12333333333333333211111122222222 13
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
|..+-...++++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 444444455555443211 12234444555565555555555555444321 11222 24455555555555555
Q ss_pred cCCHHH-HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006457 404 AGLVQE-GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482 (644)
Q Consensus 404 ~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (644)
.+..+. +...+..+.. .++...-.+.+.++++.|..+.+...+..+-..+|..+-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 554332 2333333322 355666666667777766654443333333223454444555555555554 2344444
Q ss_pred HHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 483 KKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
..+++ +| +.......+.++.+.+.-..+...+....
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44443 22 22344444444444322234444444433
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.77 E-value=11 Score=35.66 Aligned_cols=59 Identities=12% Similarity=-0.012 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 463 GSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+-....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--+|.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33447888999999999999999999999999999999999999998888888887753
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.31 E-value=83 Score=29.63 Aligned_cols=231 Identities=14% Similarity=0.251 Sum_probs=126.3
Q ss_pred cCCHHHHHHHHhcCCC----C---CHhHHHHHHHHHHHCCChhHHHHHHHHhHH--cCCC--CCChhhHHHHHHHHHccc
Q 006457 236 GGHVDVSRKVFDGMIE----K---DAVTWNSIIAIYAQNGLAAEALDVFDQMVK--STDV--KCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 236 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~--~p~~~t~~~ll~a~~~~~ 304 (644)
....++|+.-|+.+.+ + .-.+.-.||..+.+.|++++.++.|++|.. ...+ .-.....++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456777777766522 1 223445677888888888888888777741 0111 113345666666666555
Q ss_pred cHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-------hhhHHHHHH
Q 006457 305 VLRLGKCIHDQVIKM-----DLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--------KN-------VRSWTAMIA 364 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 364 (644)
+.+.-..+++.-.+. +-..-..+-+-|...|...|.+.+-.+++.++.+ .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555544444433221 1111122334566677777777777777776642 11 235666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----ccCCHHHHHH-HHHHHhhhcCCC--CCh---hHHHH
Q 006457 365 GYGMHCRAREALDLFYKMIKAG-VRPNYITFVSVLSACS-----HAGLVQEGWH-WLNTMGHEFNIE--PGV---EHYGC 432 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~-~~~~~~~~~~~~--p~~---~~~~~ 432 (644)
.|....+-..-..+|++...-. .-|.+.. ..+++-|. +.|.+++|-. +|+.. +.+.-. |.. --|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAF-KNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAF-KNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHH-hcccccCCcchhHHHHHHH
Confidence 7877777777777788765422 2344433 35566553 4577777654 44443 433322 221 23555
Q ss_pred HHHHHhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006457 433 MVDLLGRAGK----LKEAYDLIEGMKVKADFVVWGSLLGACRIH 472 (644)
Q Consensus 433 li~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 472 (644)
|..++.+.|- -.+|. -.+..|.......|+.+|..+
T Consensus 278 LANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc
Confidence 6667766662 11211 012345566777888887554
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.76 E-value=1.5e+02 Score=32.47 Aligned_cols=174 Identities=9% Similarity=-0.035 Sum_probs=97.7
Q ss_pred CcchHHHHHHHHH-cCCCchHHHHHHHHhhHCCCCCCcc-----cHHHHHHHHhccCCcHHHHHHHHHHHHhCC----CC
Q 006457 37 NVFSWNSVIADLA-RGGDSVEALRAFSSMRKLSLTPTRS-----TFPCAIKSCSALHDLHSGKQAHQQAFIFGF----HR 106 (644)
Q Consensus 37 ~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~ 106 (644)
...++-.+...+. ...++++|...+++.....-+++-. .-..+++.+.+.+... |...++..++.-- .+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4455666777665 6789999999999876543232221 1223445555554444 8888888776421 12
Q ss_pred ChhHHHHH-HHHHHhCCChHHHHHHHhhCCCC-----CCCeecHHHHHHHHH--hCCChhHHHHHHHHhHhhhhccCCCC
Q 006457 107 DVFVSSAL-IDMYSKCGELSDARKLFDEIPQR-----IRNIVSWTSMLTGYV--QNDNAREALLLFKEFLLEESECGGAS 178 (644)
Q Consensus 107 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~ 178 (644)
-...+.-+ +..+...++...|.+.++.+... .+-+..+-.++.+.. +.+.++++++.++++....... +.
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~--q~ 214 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL--QL 214 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc--cc
Confidence 22333433 33333347999999988876544 223333444444433 4566778888888774321111 11
Q ss_pred CCCCCccCCHhhHHHHHHHhh--cCCCchHHHHHHHHH
Q 006457 179 ENSDNVFVDSVAIASVLSACS--RVTVNGVTEGAHGFV 214 (644)
Q Consensus 179 ~~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 214 (644)
.+.. -.|--.++..++..+. ..|+...+.+.+..+
T Consensus 215 ~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 215 DPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 4556667777777654 456666666555544
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.73 E-value=32 Score=30.95 Aligned_cols=73 Identities=10% Similarity=-0.027 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc--CCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 373 REALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEF--NIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 373 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
+.|++.|-++...+.--++.....|...|. ..+.++++.++..+..-. +-.+|++.+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555543333333333333333 445566666555554321 1134556666666666666666555
No 343
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.72 E-value=92 Score=29.89 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=33.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCCHHHHHHH
Q 006457 322 EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KNVRSWTAMIAGYGMHCRAREALDL 378 (644)
Q Consensus 322 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~ 378 (644)
.++..+...+++.+++.+++.+-.++++.... .|...|..+|..-...|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 44555555566666666666666666654432 3556666666666666665443333
No 344
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.55 E-value=46 Score=26.38 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45777777777776553 233333344455677888888854444455678888876643 466777777777777766
Q ss_pred cCCCCCHHHHH
Q 006457 385 AGVRPNYITFV 395 (644)
Q Consensus 385 ~g~~p~~~t~~ 395 (644)
.| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45555443
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=72.26 E-value=2e+02 Score=33.49 Aligned_cols=107 Identities=19% Similarity=0.072 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 336 CKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 336 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
-+.|.+.+|..++.--.+.-...|.+...-+...+.+++|.-.|+..-+. .-.+.+|-.+|+|++|..+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHH
Confidence 34444444444433222222223333333344455566665555543211 124556666777777777666
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 5521 11111223355666666777777777666655
No 346
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=72.14 E-value=7.9 Score=29.83 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
...+++.++.+|+|......++..+...|++++|.+.+-.+.++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 455677778889999999999999999999999999888887654
No 347
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.08 E-value=33 Score=30.25 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
+++|...|+++...+|++..+...| .+. ++|-+++.++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHhh
Confidence 5667888888888999986554444 332 4688888888777654
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.63 E-value=20 Score=30.39 Aligned_cols=76 Identities=13% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCC---------CCCcchHHHHHHHHHcCCC-chHHHHHHHHhhHCCCCCCcccHHH
Q 006457 9 VSSVVSNVDKHSTNTNLTTLFNKYVD---------KNNVFSWNSVIADLARGGD-SVEALRAFSSMRKLSLTPTRSTFPC 78 (644)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~f~~~~~---------~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ 78 (644)
.++++...+.-+.+.....+++.+.. . +..+|++++.+.++... ---+..+|..|++.+.++++.-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~-~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL-DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 44444444444444444444444321 1 33445555555543333 2224445555555445555555555
Q ss_pred HHHHHhc
Q 006457 79 AIKSCSA 85 (644)
Q Consensus 79 ll~~~~~ 85 (644)
++++|.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 5555444
No 349
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.27 E-value=75 Score=27.86 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGH 419 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 419 (644)
..+|-+++.....+.+-..|-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34444554444444443332222222233344444555555555555555544
No 350
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.05 E-value=2.7 Score=40.54 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=29.3
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
+++.+.+....|++-+..+++++|+....|-.-..+....|.|++|.+.+....+.+.
T Consensus 156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 3444444445555555555555555544454444444555555555555555544443
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.63 E-value=14 Score=33.97 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 441 GKLKEAYDLIEGM-KVKADFVVW-GSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 441 g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
.+++.|...+.+. .+.|.+.+| ..=+-.+.+..+++.+..-..+++++.|+..-....|+..+.....+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445555544433 455665433 33344445566777777777777777777777777777777777777777777776
Q ss_pred H
Q 006457 519 M 519 (644)
Q Consensus 519 m 519 (644)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 6
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.61 E-value=15 Score=33.22 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEG-MKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
.+.-+..+.+.+.+.+|+...+. .+.+| |...-..++..++..|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34445667778888888877654 35555 455666777888888888888888888888887753
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.85 E-value=7.7 Score=25.12 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.9
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 497 VLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457889999999999999999888543
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.48 E-value=1.6e+02 Score=32.26 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHC
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGM---IEKDAVTWNSIIAIYAQN 267 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 267 (644)
=++|-.+.++|++++|.++.... ..+....+-..+..|+.+
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 45677777888888888887322 223334555566666554
No 355
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=67.37 E-value=87 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.258 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 006457 331 IIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~ 350 (644)
+++.+...|++-+|.++...
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33344444444444444444
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.75 E-value=1.1e+02 Score=31.57 Aligned_cols=124 Identities=8% Similarity=0.015 Sum_probs=85.7
Q ss_pred ccCCHHHHHH-HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHH
Q 006457 403 HAGLVQEGWH-WLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK--VKADFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 403 ~~g~~~~a~~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
..|++-.|-+ ++..+ +.+.-.|+....- .......|+++.|.+.+.... +.....+...++......|.+++|.
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4566665544 55555 4344445544333 344567899999999988763 3335567788889999999999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCc
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPG 529 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 529 (644)
...+-++.-+-.++.....-+..-...|-++++...+++...-..+.+.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999998776655554444444566788999999999987655444444
No 357
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.73 E-value=25 Score=37.88 Aligned_cols=150 Identities=17% Similarity=0.284 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-CCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKE-KNV----------RSWTAMIAGYGMHCRAREALDLFYKMIKA-G-VRPNYITFVS 396 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~-~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ 396 (644)
.++-.|-...+++...++.+.+.. ||. ..|.-.++---+-|+-++|+...-.|.+. | +.||.+....
T Consensus 206 nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~G 285 (1226)
T KOG4279|consen 206 NLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCG 285 (1226)
T ss_pred HHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeec
Confidence 344445555566666666555442 211 11221222222346666777666666542 2 5566543222
Q ss_pred -------HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH------------------------HHhhcCCHHH
Q 006457 397 -------VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD------------------------LLGRAGKLKE 445 (644)
Q Consensus 397 -------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~------------------------~~~~~g~~~~ 445 (644)
+-+.|...+..+.|.++|++. +.+.|....--.+.. .++|.|.+++
T Consensus 286 RIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~lek 362 (1226)
T KOG4279|consen 286 RIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEK 362 (1226)
T ss_pred hhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHH
Confidence 123344556667777777766 456665433222222 3344444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
-.++++- ...+.+-.-.+|+..|.++.+.|++++|..
T Consensus 363 lq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 363 LQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 3333321 234556667789999999999999999875
No 358
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.04 E-value=62 Score=27.03 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHHHhhc-cCCCCc-hhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 461 VWGSLLGACRIHK---NVDLGEIAAKKLFE-LEPNNC-GYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 461 ~~~~ll~~~~~~g---~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+-..+..++.... +..+++.+++.+.+ -.|... .....|+-.+++.|+|+.++++.+.+.+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444333 45566677777775 233321 2333455557777777777777776664
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.04 E-value=6.5 Score=34.47 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
+++|..-+++++.++|+...++.+++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567777888889999999999999999987664
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.29 E-value=71 Score=30.40 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh-
Q 006457 363 IAGYGMHCRAREALDLFYKMIK--AGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR- 439 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 439 (644)
|++++..+++.+++...-+--+ ..++|...-...+ -|++.+.+..+.++-..-.+.-+ .-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6788888888888776554443 2245544444333 47888888888887777655322 2223347777776654
Q ss_pred ----cCCHHHHHHHHHhC
Q 006457 440 ----AGKLKEAYDLIEGM 453 (644)
Q Consensus 440 ----~g~~~~A~~~~~~~ 453 (644)
.|.+++|+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999988543
No 361
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.09 E-value=34 Score=31.69 Aligned_cols=55 Identities=5% Similarity=-0.116 Sum_probs=46.7
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++...|++-++++....++...|.+..+|+.-+.+.+..=+.++|..-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 4446778999999999999999999999999999988888888888888777664
No 362
>PRK12798 chemotaxis protein; Reviewed
Probab=64.18 E-value=1.7e+02 Score=29.74 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=115.0
Q ss_pred cCCHHHHHHHHHhcCC----CChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHH
Q 006457 338 CGQVDLARKAFNQMKE----KNVRSWTAMIAGY-GMHCRAREALDLFYKMIKAGVRPNYI----TFVSVLSACSHAGLVQ 408 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 408 (644)
.|+.++|.+.+..+.. +.+..|-+|+.+- ....+..+|+++|++..- ..|-.. ...--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888764 3445677777654 345678899999998765 345332 3444455567889999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHH-HHHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 409 EGWHWLNTMGHEFNIEPGVEHYG-CMVDLLGRA---GKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
++..+-....+.+...|=...|. .++..+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88877776666666556433332 233333333 34455556666664222345788888888899999999999999
Q ss_pred hhccCCCCchhHHHHHHHHh-----hcCCchHHHHHHHHHhh
Q 006457 485 LFELEPNNCGYHVLLSNIYA-----NAGRWEDVERTRSLMKN 521 (644)
Q Consensus 485 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~ 521 (644)
++.+... ...-...+..|. -..++++|.+.+..+..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9987633 223333334443 23456777766665543
No 363
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.69 E-value=36 Score=31.29 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCChhH-------HHHHHHHhhccC--CC----CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 461 VWGSLLGACRIHKNVDL-------GEIAAKKLFELE--PN----NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
++--+...|+..|+.+. |...|+++.+.+ |. ......+++.++.+.|+.++|.+.+..+...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44445566666666444 444555554433 22 24567788999999999999999999987544
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.14 E-value=1.7e+02 Score=29.46 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=50.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHh-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLLG-RAGKLKEAYDLIEGMKV--KAD------FVVWGSLL 466 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--~p~------~~~~~~ll 466 (644)
+..+.+.|.+..|.++.+-+ +.+.|+ +...-.+||.|+ ++++++--+++.+.... ..+ ...|+.-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlL---lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLL---LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHH---HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 34566677777777777766 344443 444444566654 66677666666665421 111 12333333
Q ss_pred HHHHhcCC--------------hhHHHHHHHHhhccCCC
Q 006457 467 GACRIHKN--------------VDLGEIAAKKLFELEPN 491 (644)
Q Consensus 467 ~~~~~~g~--------------~~~a~~~~~~~~~~~p~ 491 (644)
.-+...++ .+.|...+++++...|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 33332222 37888888888887774
No 365
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.09 E-value=1.2e+02 Score=27.69 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=41.0
Q ss_pred CCCC-hhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHH--HHHhCCChhHHHHHHHHhH
Q 006457 104 FHRD-VFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLT--GYVQNDNAREALLLFKEFL 168 (644)
Q Consensus 104 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~ 168 (644)
+.|+ +.+||-|--.+...|+++.|.+.|+...+..| ..-|..+=+ ++.--|++.-|.+-|...-
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 3454 56788888888888999999999988877422 122332222 2334577877776666553
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.31 E-value=1.2e+02 Score=30.96 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=60.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHhhcC
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYI--TFVSVLSACS--HAGLVQEGWHWLNTMGHEFNI-EPGVEHYGCMVDLLGRAG 441 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g 441 (644)
.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3567888888888888876 555544 3444444443 456677888888877542111 011223333333222222
Q ss_pred CHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--hcCChhHHHHHHHHhhcc
Q 006457 442 KLKEAYDLIEGMKVKADF-VVWGSLLGACR--IHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 442 ~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 488 (644)
.+.........-..++.. .....+.++-+ ..|+++.|...+-+++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222221111111111111 22233334443 467888888777777663
No 367
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.30 E-value=87 Score=28.20 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=32.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKADFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
.++.+.+.++.|++-..+. .+.|... ....-..+|.+...++.|+.-|+++++.+|....
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 3444555555555544433 2223111 1111124555666788888888888888887543
No 368
>PRK09169 hypothetical protein; Validated
Probab=61.91 E-value=4.3e+02 Score=33.57 Aligned_cols=473 Identities=10% Similarity=-0.009 Sum_probs=261.6
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhhHC-----CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh---C----CC
Q 006457 38 VFSWNSVIADLARGGDSVEALRAFSSMRKL-----SLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIF---G----FH 105 (644)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g----~~ 105 (644)
...+..+.+.+++.-+.....+.+..+... .-..+...+..+|+++++-.+-..+...-..+... . ..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 455667777777776655444433333221 12346777888999998877766555444333211 0 12
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHhh----CCCC-----CCCeecHHHHHHHHHhCCChhHHHH----HHHHhHhhhh
Q 006457 106 RDVFVSSALIDMYSKCGELSDARKLFDE----IPQR-----IRNIVSWTSMLTGYVQNDNAREALL----LFKEFLLEES 172 (644)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~~ 172 (644)
.+......++++++|--+.......-.. +... .-+......++++++|-.+.+.+.. +-..+. .
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla-~-- 278 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLA-R-- 278 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHh-c--
Confidence 2444455667777776554443332222 2211 1345566778888888765544322 222221 0
Q ss_pred ccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHH----H---hCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 006457 173 ECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVI----K---RGFDSEVGVGNTLIDAYARGGHVDVSRKV 245 (644)
Q Consensus 173 ~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (644)
.+.....-|...+...+.++++..+-+.+......+. . ..-.-+..-....+++++|..+-+.+...
T Consensus 279 ------~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~A 352 (2316)
T PRK09169 279 ------EPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAA 352 (2316)
T ss_pred ------ChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHH
Confidence 0011223577888899999999877655443322221 1 11234555566778899998876654322
Q ss_pred H----hcCC-------CCCHhHHHHHHHHHHHCCChhH----HHHHHHHhHHcCC--CCCChhhHHHHHHHHHccccHHH
Q 006457 246 F----DGMI-------EKDAVTWNSIIAIYAQNGLAAE----ALDVFDQMVKSTD--VKCNAVTLSAVLLAIAHLGVLRL 308 (644)
Q Consensus 246 ~----~~~~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~--~~p~~~t~~~ll~a~~~~~~~~~ 308 (644)
. +.+. .-+..-....+.++.+-++-+. |..+...+....+ -..|..-....+.+|++.+.-+.
T Consensus 353 a~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~ 432 (2316)
T PRK09169 353 AEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEA 432 (2316)
T ss_pred HHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchH
Confidence 2 2221 1255666677888888776432 3334444331212 23567778889999998876654
Q ss_pred HHHHHHHH----HHh---CCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcCC-------CChhhHHHHHHHHHhcC
Q 006457 309 GKCIHDQV----IKM---DLEESVIVGTSIIDMYCKCGQVDL----ARKAFNQMKE-------KNVRSWTAMIAGYGMHC 370 (644)
Q Consensus 309 a~~i~~~~----~~~---~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~-------~~~~~~~~li~~~~~~g 370 (644)
+......+ ... .-..+..-....+.+++|.++-+. +..+...+.. -+..-....+.++++-+
T Consensus 433 c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp 512 (2316)
T PRK09169 433 CRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWP 512 (2316)
T ss_pred HHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCC
Confidence 43333222 111 123445666678888888876542 2333333321 24455677888999888
Q ss_pred CHHHHHH----HHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHH----HHHHHHHhhhcC--CCCChhHHHHHHHHH
Q 006457 371 RAREALD----LFYKMIKA---GVRPNYITFVSVLSACSHAGLVQEG----WHWLNTMGHEFN--IEPGVEHYGCMVDLL 437 (644)
Q Consensus 371 ~~~~A~~----~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a----~~~~~~~~~~~~--~~p~~~~~~~li~~~ 437 (644)
+.+.... +..++... --.-|..-+...++++++-.+.+.+ ..+...+..+-+ -..+.......+.++
T Consensus 513 ~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnAL 592 (2316)
T PRK09169 513 DSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNAL 592 (2316)
T ss_pred ccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHH
Confidence 7655332 33333221 1234677888999999998774432 333443322211 123566777788889
Q ss_pred hhcCCHHH----HHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc---cC-----CCCchhHHHH
Q 006457 438 GRAGKLKE----AYDLIEGMK------VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE---LE-----PNNCGYHVLL 499 (644)
Q Consensus 438 ~~~g~~~~----A~~~~~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~-----p~~~~~~~~l 499 (644)
+|.+.-.. |..+..... ..-|..-+..+++++.+-.+.+....+...+-. .+ --++.....+
T Consensus 593 SKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~ 672 (2316)
T PRK09169 593 SKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANA 672 (2316)
T ss_pred hhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHH
Confidence 98776432 233333331 123677888899999988877665544433322 11 1234455666
Q ss_pred HHHHhhcCCchHHHHHHHHH
Q 006457 500 SNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~m 519 (644)
.+++++-.+.+.+.+....+
T Consensus 673 LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 673 LNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred HHHHHhCCCcHHHHHHHHHH
Confidence 67777777766554444444
No 369
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.44 E-value=72 Score=33.80 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=25.7
Q ss_pred hCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHh
Q 006457 120 KCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEF 167 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 167 (644)
+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 445555555554433 34455666666666666666666666654
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.37 E-value=2.6e+02 Score=30.78 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=106.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhH-CCCCCC--cccHHHHHHHHh-ccCCcHHHHHHHHHHHHhCCCCChh---
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRK-LSLTPT--RSTFPCAIKSCS-ALHDLHSGKQAHQQAFIFGFHRDVF--- 109 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~--- 109 (644)
++..|..||. .|++.++.+.+ ..+.|. ..++-.+...+. ...+++.|+..++..+...-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 6667777775 46666666663 333342 234444555554 5678999999999776544333221
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHhhCCCC--CCCeecHH----HH-HHHHHhCCChhHHHHHHHHhHhhhhccCCCCCC
Q 006457 110 --VSSALIDMYSKCGELSDARKLFDEIPQR--IRNIVSWT----SM-LTGYVQNDNAREALLLFKEFLLEESECGGASEN 180 (644)
Q Consensus 110 --~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 180 (644)
....++..|.+.+... |.+.+++..+. ......|. -+ +..+...+++..|++.++......
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a--------- 169 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA--------- 169 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh---------
Confidence 2345667777776655 88887775543 11122222 22 222223479999999999886311
Q ss_pred CCCccCCHhhHHHHHHHhhc--CCCchHHHHHHHHHHHhCC---------CCCccHHHHHHHHH--HhcCCHHHHHHHHh
Q 006457 181 SDNVFVDSVAIASVLSACSR--VTVNGVTEGAHGFVIKRGF---------DSEVGVGNTLIDAY--ARGGHVDVSRKVFD 247 (644)
Q Consensus 181 ~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~ 247 (644)
.....|-...+..++.+... .+..+.+.+....+..... .|-..++..+++.+ ...|+++.+...++
T Consensus 170 ~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 170 NQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11233444555556665543 3445555555555433221 22344555555543 45666666655544
Q ss_pred cC
Q 006457 248 GM 249 (644)
Q Consensus 248 ~~ 249 (644)
++
T Consensus 250 ~l 251 (608)
T PF10345_consen 250 QL 251 (608)
T ss_pred HH
Confidence 43
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.78 E-value=2.8e+02 Score=31.64 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=21.8
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhhH
Q 006457 40 SWNSVIADLARGGDSVEALRAFSSMRK 66 (644)
Q Consensus 40 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 66 (644)
-|..|+.-|...|..++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 377888888888888888888888765
No 372
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.73 E-value=1.6e+02 Score=28.29 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
+++.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445667888999999999998887753 556788899999999998888888887764
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.58 E-value=23 Score=22.93 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 374
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.93 E-value=90 Score=32.87 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC--h---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEKN--V---RSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~~--~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
.|+.-|.+++++++|..++..|.-.. . .+.+.+.+.+.+..-..+....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 57778999999999999999886321 1 2333334444444333444444444443
No 375
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.74 E-value=2.6e+02 Score=30.30 Aligned_cols=144 Identities=10% Similarity=0.030 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH---hh----cCCH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLL---GR----AGKL 443 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~ 443 (644)
+...|..++++..+.| .|-..--...+..+.. +.++.+.-.+..+.. .|.+-....-..+.+.. .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccch
Confidence 5566666666666665 3332222233333333 555554444444422 23222111111111111 00 1244
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh----cCCchHHHHH
Q 006457 444 KEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN----AGRWEDVERT 515 (644)
Q Consensus 444 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~ 515 (644)
+.+...+.+...+-+......|...+.. ..+.+.|...+.++-+.. ......++.++-. .. +..|.++
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~ 531 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRY 531 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHH
Confidence 4555555555433344444444433322 234566666666655544 4455556655532 22 5677777
Q ss_pred HHHHhh
Q 006457 516 RSLMKN 521 (644)
Q Consensus 516 ~~~m~~ 521 (644)
++...+
T Consensus 532 ~~~~~~ 537 (552)
T KOG1550|consen 532 YDQASE 537 (552)
T ss_pred HHHHHh
Confidence 766654
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.49 E-value=1.4e+02 Score=27.32 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh-hcCCCCChhHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGH-EFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~p~~~~~~~li~~ 436 (644)
|.+.-++.+.+.+...+|+...++-.+.. +.|.-+-..++.-++-.|++++|..-++...+ .....+...+|..+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455677778888888888888877752 33555566677888889999999887776622 01222335566666653
Q ss_pred HhhcCCHHHHH-HHHHhCCCCC-----CHHHHHHHH-HHHHh--cCChhHHHHHHHHhhccCCCC
Q 006457 437 LGRAGKLKEAY-DLIEGMKVKA-----DFVVWGSLL-GACRI--HKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 437 ~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~ll-~~~~~--~g~~~~a~~~~~~~~~~~p~~ 492 (644)
- .+. ++|..- ..| +...|-..+ .+..- .|.-+....+-+..++.-|..
T Consensus 82 e-------a~R~evfag~-~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 E-------AARNEVFAGG-AVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred H-------HHHHHHhccC-CCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2 122 234321 112 233454444 44332 234444555666677766654
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.23 E-value=14 Score=21.28 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 473 KNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766654
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.33 E-value=2.2e+02 Score=29.32 Aligned_cols=199 Identities=11% Similarity=0.039 Sum_probs=96.2
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccH--HHHHHHHHHhcCCHHHHHHHHhcCCCCCH---hHHHHHHHHHHHCCChhHH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGV--GNTLIDAYARGGHVDVSRKVFDGMIEKDA---VTWNSIIAIYAQNGLAAEA 273 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 273 (644)
...|+.+.+ +.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++. ... +-+...+..|+.+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHH
Confidence 344555444 34445676665432 34455666778888777666654333221 122 234455677777665
Q ss_pred HHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 274 LDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV--GTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 274 ~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
..+++.-. ......+..-.+ .+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 85 ~~Ll~~~~-~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 85 EELLDLGK-FADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHHHHcCC-cccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 55553321 100011111112 233334445553 4455556665554321 223455556778887777776654
Q ss_pred CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHH
Q 006457 352 KEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITF---VSVLSACSHAGLVQEGWHW 413 (644)
Q Consensus 352 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~ 413 (644)
... |..-++.+..+ +..|+. ++.+.+.+.|..|+...- .+++......|..+-+.-+
T Consensus 159 ~~~~~~d~~g~TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L 221 (413)
T PHA02875 159 ACLDIEDCCGCTPLIIA-MAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221 (413)
T ss_pred CCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence 332 22233333333 334554 344556667766654321 2344434455665544333
No 379
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.59 E-value=1.3e+02 Score=28.65 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=44.9
Q ss_pred HHHHHHCCChhHHHHHHHHhH-HcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 006457 261 IAIYAQNGLAAEALDVFDQMV-KSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK-- 337 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~-~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-- 337 (644)
|.+++..+++.+++...-+-- .-..++|.. ...-|-.|.+.+.+..+.++-..-.+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 678888888888876554433 112333332 223333456666666666665555543323333345555555433
Q ss_pred ---cCCHHHHHHHH
Q 006457 338 ---CGQVDLARKAF 348 (644)
Q Consensus 338 ---~g~~~~A~~~~ 348 (644)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555543
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.32 E-value=41 Score=30.35 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444444444444444
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.88 E-value=28 Score=36.43 Aligned_cols=96 Identities=19% Similarity=0.068 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
.|+...|...+..+ +...|- ......|...+.+.|...+|-.++.+. . ....+.++-++..++....|++.|+
T Consensus 620 ~gn~~~a~~cl~~a---~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRA---LNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHH---hccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 45556666655554 233331 122233444555555555555555432 1 1123345555666666666666677
Q ss_pred HHHHHhhccCCCCchhHHHHHHH
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
+.++.+++++|+++..-..|..+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHH
Confidence 77776666666666555554433
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.62 E-value=1.4e+02 Score=25.51 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---------CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMK---------EKNVRSWTAMIAGYGMHCR-AREALDLFYKMIKAGVRPNYITFVSVL 398 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (644)
|.++.-.+.-+.+.-...+++.+. ..+-.+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444432 1244456666666654443 223556666666666666666666666
Q ss_pred HHHHcc
Q 006457 399 SACSHA 404 (644)
Q Consensus 399 ~a~~~~ 404 (644)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666543
No 383
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.55 E-value=1.1e+02 Score=25.04 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhh-------ccCCCCchhHH----HHHHHHhhcCCchHHHHHHHHH
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLF-------ELEPNNCGYHV----LLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 519 (644)
|...+..|-.++...|++++++...++.+ +++.+....|+ .-+.++...|+.++|.+.|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34455556666666666666655555544 34444433333 3345677889999999888754
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.24 E-value=38 Score=25.19 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=18.6
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH
Q 006457 403 HAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 448 (644)
+....++|+..+....+...-.|+ -.+..+|+.+|...|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444332221221 1233444444444454444443
No 385
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=53.82 E-value=2.5e+02 Score=28.30 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=115.4
Q ss_pred cCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH-c---
Q 006457 338 CGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIK-AGVRPNYITFVSVLSACS-H--- 403 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~-~--- 403 (644)
.++.+.|.+-+-...+ .| ......++..|...++|+.--+...-+.+ .| + .......++.-|. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrg-q-lk~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRG-Q-LKQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-H-HHHHHHHHHHHHHHhccC
Confidence 5666666655443332 12 33455666777777777765555544432 22 1 1222223332221 1
Q ss_pred cCCHHHHHHHHHHHhh--hcCCCC---ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH------------HH
Q 006457 404 AGLVQEGWHWLNTMGH--EFNIEP---GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGS------------LL 466 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~--~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------ll 466 (644)
..+.+--+.+.+.+.. +-.+-. ....-..|...+..+|++++|.+++.+.+++ ||.+ -+
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQm 178 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQM 178 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHH
Confidence 1122222222222211 001100 1223345677888999999999999988543 3322 23
Q ss_pred HHHHhcCChhHHHHHHHHhhccC---CCC----chhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEE
Q 006457 467 GACRIHKNVDLGEIAAKKLFELE---PNN----CGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKV 539 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 539 (644)
..|...+|+-.|..+.+++.... |+- ..+|..+.....+.+.+=++.+.++..-+-|..+.....|+++-..+
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 67788899999998888875532 321 34788899988999999999999999988876665444566654333
Q ss_pred EEEE
Q 006457 540 HAFL 543 (644)
Q Consensus 540 ~~f~ 543 (644)
-.|+
T Consensus 259 v~f~ 262 (439)
T KOG1498|consen 259 VSFC 262 (439)
T ss_pred eeEE
Confidence 3444
No 386
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.25 E-value=12 Score=38.04 Aligned_cols=95 Identities=8% Similarity=0.023 Sum_probs=61.5
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHH-HHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCC
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCM-VDLLGRAGKLKEAYDLIEGM-KVKADFV-VWGSLLGACRIHKN 474 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~ 474 (644)
++.....+.++.|..++.+++ .+.|+-..|-+. ..++.+.+++..|+.=+.++ ...|... .|---..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 344556678888888888874 467765444332 36777888888877655544 4444322 33333355666677
Q ss_pred hhHHHHHHHHhhccCCCCchh
Q 006457 475 VDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~ 495 (644)
+.+|...++....+.|+++..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 788888888888888887643
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.13 E-value=49 Score=24.64 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHccCCHHHHHHH
Q 006457 368 MHCRAREALDLFYKMIKAGVRP-NY-ITFVSVLSACSHAGLVQEGWHW 413 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~ 413 (644)
...+.++|+..|+...+.-..| +. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888877653333 22 3677788888888888877665
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.86 E-value=47 Score=28.12 Aligned_cols=62 Identities=15% Similarity=0.004 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 444 KEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 444 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
+.|.++.+-|+ .....-.........|++..|.++.+.++..+|++.......+++|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 46777777775 233333445556778999999999999999999999888888888766554
No 389
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.57 E-value=62 Score=31.56 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHH
Q 006457 428 EHYGCMVDLLGRAGKLKEAYDLIEGM-K---VKA--DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSN 501 (644)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 501 (644)
.+|.-=..-|.+..++..|...|.+- . -.| +.+.|+.-..+-...||+..++.-..+++.++|.+.-.|.-=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444456688899999999999865 1 123 45567766677778899999999999999999999999988888
Q ss_pred HHhhcCCchHHHHHHHHH
Q 006457 502 IYANAGRWEDVERTRSLM 519 (644)
Q Consensus 502 ~~~~~g~~~~a~~~~~~m 519 (644)
++....++++|....+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888888777665544
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.35 E-value=1e+02 Score=24.75 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588889999999999999999998876
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=51.92 E-value=3.1e+02 Score=28.81 Aligned_cols=160 Identities=10% Similarity=0.077 Sum_probs=84.5
Q ss_pred CCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHH
Q 006457 287 KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMI 363 (644)
Q Consensus 287 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 363 (644)
..|.....+++..+.......-.+.+..+|...| .+-..+..++..|... ..++-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455556666666666666666666666666644 3444555666666665 44455555554443 2344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006457 364 AGYGMHCRAREALDLFYKMIKAGVRPNY------ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLL 437 (644)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (644)
.-|-+ ++.+.+..+|.+.... +-|-. ..|.-+... -..+.+....+...+.+..|...-...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 5666666666666544 22211 123222211 12345555555555555545544455555555556
Q ss_pred hhcCCHHHHHHHHHhC
Q 006457 438 GRAGKLKEAYDLIEGM 453 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~ 453 (644)
.-..++.+|++++..+
T Consensus 216 s~~eN~~eai~Ilk~i 231 (711)
T COG1747 216 SENENWTEAIRILKHI 231 (711)
T ss_pred ccccCHHHHHHHHHHH
Confidence 6666666666666544
No 392
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.14 E-value=22 Score=39.16 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 006457 369 HCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
+.++++.+.+.+...--| .++|..+-+.|.++-|+.+.+.-..+ ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 345666665544432222 13455556677777776665443222 223456888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 449 LIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 449 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.-.+.. |..+|..|......+||.+.|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 877764 677888888888888888888888887654
No 393
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.86 E-value=2.4e+02 Score=27.31 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=68.0
Q ss_pred HHHhcCC-HHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006457 334 MYCKCGQ-VDLARKAFNQMK-EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGW 411 (644)
Q Consensus 334 ~~~~~g~-~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 411 (644)
-+.+.|- ..-|.++|+... ++| .+.+++++.+.+.-+.-+++ ++|+..+-......+...|.-+-..
T Consensus 175 ~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elve 243 (412)
T KOG2297|consen 175 NLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVE 243 (412)
T ss_pred hHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHH
Confidence 3344442 334556665543 222 34455555554433333332 4677666666666555555433221
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH-hCC--CCCCH----HHHHHHHHHHHhcCChh-HHHHHHH
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIE-GMK--VKADF----VVWGSLLGACRIHKNVD-LGEIAAK 483 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~--~~p~~----~~~~~ll~~~~~~g~~~-~a~~~~~ 483 (644)
-.-..+. ...-.+.-..|.+-..+...+++...... +|+ .-|+. +.|.+++++-..+++-+ -|.++++
T Consensus 244 y~~~q~~----~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr 319 (412)
T KOG2297|consen 244 YHRNQQS----EGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR 319 (412)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH
Confidence 1111110 00111222233333444444555444433 231 12332 36777666654443322 2333333
Q ss_pred HhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 484 KLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
++ -.|.-|..+++..|+.+-..
T Consensus 320 hl--------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 HL--------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HH--------HhhhHHHHHHhcCChHHHHH
Confidence 33 23455666666777665443
No 394
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.61 E-value=1e+02 Score=25.31 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 374 EALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
+..+-+.....-.+.|++......|.||.+.+++..|.++|+.+.. ...+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 3444555566667889999999999999999999999999998854 34444445665553
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.57 E-value=1.1e+02 Score=23.32 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 006457 337 KCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREAL 376 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (644)
..|+.+.|.++++.++ +....|..+++++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 77777777777777777655443
No 396
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.47 E-value=2e+02 Score=25.93 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=50.6
Q ss_pred HHccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHH
Q 006457 300 IAHLGVLRLGKCIHDQVIKMDLEES--VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRS--WTAMIAGYGMHCRAREA 375 (644)
Q Consensus 300 ~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A 375 (644)
+...++++.|...++.........+ ..+--.|.......|.+|+|..+++....++-.+ ...-.+.+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4455566666665555443211111 1111234555667788888888887776664333 22234567778888888
Q ss_pred HHHHHHHHHcC
Q 006457 376 LDLFYKMIKAG 386 (644)
Q Consensus 376 ~~~~~~m~~~g 386 (644)
..-|++.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 88888877764
No 397
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.30 E-value=1.4e+02 Score=23.98 Aligned_cols=27 Identities=19% Similarity=0.566 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 255 VTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
.-|..++.-|...|..++|++++.+..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHh
Confidence 358889999999999999999999987
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.78 E-value=40 Score=26.10 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=34.7
Q ss_pred HhcCChhHHHHHHHHhhccCCCC---------chhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNN---------CGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.+.||+..|.+.+.+.+...... ......++.++...|.+++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777776666665532111 23345577778889999999999888764
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.75 E-value=2.6e+02 Score=26.71 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=43.0
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
|+.....+...|.+.|++.+|+..|-.-.+++...+..++.-....|...++ |.+.-..++. +.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------------DLFIARAVLQ-YL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------------HHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------------hHHHHHHHHH-HH
Confidence 5677778888888999988888877555444444443344333333333332 2222222222 34
Q ss_pred ccccHHHHHHHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIK 318 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~ 318 (644)
..+++..|...+....+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 45677777766655544
No 400
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.08 E-value=1.4e+02 Score=23.50 Aligned_cols=85 Identities=11% Similarity=0.145 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHc
Q 006457 204 NGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKS 283 (644)
Q Consensus 204 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 283 (644)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|. .
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla-~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA-A 96 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH-h
Confidence 45566665555544311 22233333455778899999999999999999999977654 46677777777777775 4
Q ss_pred CCCCCChhhH
Q 006457 284 TDVKCNAVTL 293 (644)
Q Consensus 284 ~~~~p~~~t~ 293 (644)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 33 3444333
No 401
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.82 E-value=91 Score=27.64 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=17.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
+..|.+.|.+++|.+++++..+ +|++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 3556666666666666666666 555433
No 402
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=46.45 E-value=3.5e+02 Score=27.84 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
..|+.-|.-.|++.+|.....++.-| ..+.+.+++.+.-+.|+-...+.+++..-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34667777788888888887776655 34567777777777776666666665555444
No 403
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.30 E-value=29 Score=31.84 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=36.4
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 437 LGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
..+.|+.+.|.+++.+. ...| ....|..+...-.+.|+.+.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44556666666666655 2223 45567766666677777777777777777777665
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.97 E-value=80 Score=20.82 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=20.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345566666777777777776666666655553
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.44 E-value=68 Score=28.89 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=39.0
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.....+.+......+.+.+-....|+..+|..++.++...|+.++|.+..+++
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33556666666555555554566788888888888888888888888888776
No 406
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.57 E-value=3.5e+02 Score=28.85 Aligned_cols=123 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCC----------ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----------------
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEP----------GVEHYGCMVDLLGRAGKLKEAYDLIEGM----------------- 453 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~~----------------- 453 (644)
+.+...++++..-|...+..+...- .+.+.-.+.+++-..|+.+.|.+++++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ------CCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHhhccCCC-CchhHHHHHHHHh-hcCCchHHHHHHHHHhhC
Q 006457 454 ------KVKADFVVWGSLL---GACRIHKNVDLGEIAAKKLFELEPN-NCGYHVLLSNIYA-NAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 454 ------~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 522 (644)
-..-|-.-|-+|- ....+.|-+..|.+..+-+++++|. ||.....+++.|+ ++.+|.--+++++..+..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 006457 523 R 523 (644)
Q Consensus 523 ~ 523 (644)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.26 E-value=47 Score=31.97 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL 398 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (644)
-||..|..-.+.||+++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888889999999999999999988776666665544
No 408
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.07 E-value=3.8e+02 Score=27.56 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=29.1
Q ss_pred hhHCCCCCCccc--HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHhh
Q 006457 64 MRKLSLTPTRST--FPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVF--VSSALIDMYSKCGELSDARKLFDE 133 (644)
Q Consensus 64 m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 133 (644)
+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..|+.. .....+...+..|+.+.+..+++.
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 334455444322 223334444445543 334444455444321 112233444556676666666654
No 409
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.62 E-value=68 Score=22.57 Aligned_cols=29 Identities=10% Similarity=0.353 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMG 418 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (644)
|-.--..++.++...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455566666666666666665553
No 410
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.44 E-value=8.3e+02 Score=31.36 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=76.8
Q ss_pred HHhccCCcHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhh-CCCCCCCeecHHHHHHHHHhCCC
Q 006457 82 SCSALHDLHSGKQAHQQA----FIFGFHRDVFVSSALIDMYSKCGELSDARKLFDE-IPQRIRNIVSWTSMLTGYVQNDN 156 (644)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 156 (644)
+-.+.+.+..|...++.- ++. ......+-.+...|+.-+++|....+... ... |+ ...-|-.....|+
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--PS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--cc---HHHHHHHHHhhcc
Confidence 444556666666666652 111 11122333444577777787777766653 222 22 2233445566788
Q ss_pred hhHHHHHHHHhHhhhhccCCCCCCCCCccCC-HhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHH-HHHHHHH
Q 006457 157 AREALLLFKEFLLEESECGGASENSDNVFVD-SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGN-TLIDAYA 234 (644)
Q Consensus 157 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~ 234 (644)
+..|...|+.+. +..|+ ..+++.++......+.++...-..+-.... ..+....++ .=+.+--
T Consensus 1465 ~~da~~Cye~~~--------------q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW 1529 (2382)
T KOG0890|consen 1465 WADAAACYERLI--------------QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAW 1529 (2382)
T ss_pred HHHHHHHHHHhh--------------cCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHh
Confidence 888888888864 33444 556666666655555555443322222111 111122222 2222334
Q ss_pred hcCCHHHHHHHHhcCCCCCHhHHHHH
Q 006457 235 RGGHVDVSRKVFDGMIEKDAVTWNSI 260 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~~~~~~~~~~l 260 (644)
+.+++|....... .++..+|.+.
T Consensus 1530 ~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1530 RLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhcchhhhhhhhh---cccccchhHH
Confidence 5556665555544 4455555544
No 411
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.82 E-value=4e+02 Score=27.52 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHH
Q 006457 287 KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQM---KEKNVRSWTAMI 363 (644)
Q Consensus 287 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 363 (644)
..+......++..+ .|+...+..+++.+...+-..+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 34444444444433 5777777777776654321111 22222222221 122223344555
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006457 364 AGYGM---HCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG 405 (644)
Q Consensus 364 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 405 (644)
+++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 4789999999999999998887666555555544443
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.60 E-value=1.8e+02 Score=24.02 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHHHhhc--cCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 477 LGEIAAKKLFE--LEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 477 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
.+..+|+.|.. +.-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67778887765 4466678888999999999999999998864
No 413
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.23 E-value=1.9e+02 Score=30.64 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC--CHh---HHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGMIEK--DAV---TWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
..|+.-|.+.+++++|..++..|.-. ... +.+.+.+.+.+..-..+....++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 46788899999999999999998432 222 34444555555554555555566555
No 414
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.95 E-value=2.8e+02 Score=25.94 Aligned_cols=117 Identities=10% Similarity=-0.032 Sum_probs=67.6
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHH
Q 006457 335 YCKCGQVDLARKAFNQMK--EKNV-RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFV-SVLSACSHAGLVQEG 410 (644)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a 410 (644)
|.....++.|...|.+.. .|++ .-|+.-+.++.+..+++.+.+--.+.++ +.||.+--. .+-.+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334456777777666554 3555 3456666677777777777776666665 566665333 334455666677777
Q ss_pred HHHHHHHh---hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 411 WHWLNTMG---HEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 411 ~~~~~~~~---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
+..+.+.. ++..+.|.......|.++--+.=...++.++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77777662 22344445555555555444444444455555544
No 415
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.62 E-value=5.9e+02 Score=29.15 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhcCCCC-Cc-----chHHHHHHHHHcCCCc--hHHHHHHHHhhHCCCCCCcccHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKYVDKN-NV-----FSWNSVIADLARGGDS--VEALRAFSSMRKLSLTPTRSTFP 77 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p-~~-----~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~ 77 (644)
..-|..|+-.|...|.-++|++++.+....| +. ..+..++.-+.+.+.. +-.++.-.+..+....-....|.
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 3468899999999999999999998876643 11 2344455555555554 45555555544432111111121
Q ss_pred H------------HHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 006457 78 C------------AIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKC 121 (644)
Q Consensus 78 ~------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 121 (644)
. .+-.+......+.+..+++.++...-.++....+.++..|...
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1 1112334455667778888888766667777888888888653
No 416
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.50 E-value=3.7e+02 Score=26.53 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------ccCCHHHHHHHHHHHhhhcCCCCChhH-HHHHHHHHhhcCCH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACS------HAGLVQEGWHWLNTMGHEFNIEPGVEH-YGCMVDLLGRAGKL 443 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~------~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~ 443 (644)
-.++++.++++....+ .|..+.....|.+|- ..-+|.....+|+.+. .+.|++.+ .|- .-++++.--.
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNR-AVAla~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNR-AVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehH-HHHHHHhhhH
Confidence 3678889999988887 488888888887663 2345677777777773 34555332 332 2233444445
Q ss_pred HHHHHHHHhCCCCCC---H-HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 444 KEAYDLIEGMKVKAD---F-VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 444 ~~A~~~~~~~~~~p~---~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
+.++.+++.....|. . ..+..-...+.+.|..++|...|++++.+.++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 666777766643332 1 23444457778899999999999999998776543
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.34 E-value=1.2e+02 Score=32.10 Aligned_cols=134 Identities=10% Similarity=-0.066 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCC--CHH
Q 006457 387 VRPNYITFVSVLSACSHAG--LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR-AGKLKEAYDLIEGM-KVKA--DFV 460 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p--~~~ 460 (644)
-.|+..|...++.-...-- .-+.|-.++..|.+ .+.|--...| +...|.| .|+...|...+... ..+| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 3467777666665444322 23445556666632 3334322222 2334544 68888898887765 2233 223
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
..-.|.....+.|-...|-.++.+.+.+.-..|.++..++++|....+++.|.+.++...+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 444566666667777778899999999888888999999999999999999999998876653
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.46 E-value=1.2e+02 Score=24.92 Aligned_cols=42 Identities=12% Similarity=0.366 Sum_probs=24.0
Q ss_pred HHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHH
Q 006457 59 RAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAF 100 (644)
Q Consensus 59 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 100 (644)
+-++.+....+-|++...-..+++|.+.+|+..|..+++-++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444555666666666666666666666666665554
No 419
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.34 E-value=58 Score=19.97 Aligned_cols=27 Identities=15% Similarity=-0.093 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChhHHHHH--HHHhhccCC
Q 006457 464 SLLGACRIHKNVDLGEIA--AKKLFELEP 490 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~--~~~~~~~~p 490 (644)
.+...+-..|++++|+.+ ++-+..++|
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344444555555555555 224444443
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.28 E-value=41 Score=27.97 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=15.5
Q ss_pred CCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 52 GDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 52 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 334456666666666665544 34555543
No 421
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=39.09 E-value=59 Score=31.34 Aligned_cols=78 Identities=5% Similarity=-0.054 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 424 EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGS-LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
.-|+..|...+.-..+.|.+.+...+|.+. ...| |+..|-. --.-+..++|++.+..++.+.++++|++|..+....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555555555445556666666666655 3334 5556643 223446789999999999999999999988776543
Q ss_pred H
Q 006457 501 N 501 (644)
Q Consensus 501 ~ 501 (644)
.
T Consensus 184 r 184 (435)
T COG5191 184 R 184 (435)
T ss_pred H
Confidence 3
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.81 E-value=66 Score=21.25 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=13.2
Q ss_pred cCCCchHHHHHHHHhhHCCCCCCcccHHHH
Q 006457 50 RGGDSVEALRAFSSMRKLSLTPTRSTFPCA 79 (644)
Q Consensus 50 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 79 (644)
+.|-..++..++++|.+.|+..+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444444444444444444444333
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.76 E-value=1.6e+02 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACR 470 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 470 (644)
.+-.|.+.|.+++|.+++++.-..|+.......+....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II 154 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 34567777888888888777633555544444443333
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.42 E-value=1.8e+02 Score=22.23 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHH
Q 006457 207 TEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEAL 274 (644)
Q Consensus 207 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 274 (644)
+.+++..+...|+-.+ .-...+-.+-...|+.+.|.++++.++ +.+..|...+.++-..|..+-|.
T Consensus 21 ~~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455555555553211 112222222235678888888888888 77888888888888877765553
No 425
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=37.23 E-value=2.4e+02 Score=23.33 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWG-SLLGACRIHKNVDLGEIAAKKL 485 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~ 485 (644)
..+-.++..++.=.|..++|.++++..+.-+.-...| -++..|....+.++-.++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455666777777788888888887776555444333 4567777666665555554443
No 426
>PRK11619 lytic murein transglycosylase; Provisional
Probab=36.94 E-value=6.2e+02 Score=28.03 Aligned_cols=183 Identities=10% Similarity=-0.100 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEK--NV-RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
...-+....+.++++.+...+..|+.. +. .-.-=+..++...|+.++|...|++... .. +|-.++.+ .+.
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~L 387 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRL 387 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHc
Confidence 333344444667777777777666531 11 1122244455556777777777776532 11 23333321 112
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCh------hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPGV------EHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 478 (644)
|..-. + . ....|.. .--..-+..+...|...+|...+..+-...+......+.......|..+.+
T Consensus 388 g~~~~----~----~-~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 388 GEEYP----L----K-IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred CCCCC----C----C-CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHH
Confidence 21100 0 0 0000000 001122445667788888888877663334555555566666778888888
Q ss_pred HHHHHHhhccC---CCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcC
Q 006457 479 EIAAKKLFELE---PNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAK 526 (644)
Q Consensus 479 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 526 (644)
.....+....+ -.-|..|.-....+++.-.++.+.-.--...+.+..+
T Consensus 459 i~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 459 VQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 77766543211 0113345555555666666666553322333555543
No 427
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.76 E-value=3.5e+02 Score=25.13 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIH 472 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 472 (644)
++.++...|+.+.|..+++.+.. .-.+......++.. ..+|.+.||..+.+.....-....|..++..|...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 55555556666666666665511 11122222333333 44567777776666653221233555566555533
No 428
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.62 E-value=1.6e+02 Score=22.37 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=28.6
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 006457 336 CKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 336 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (644)
+...+.+.|.++++.++.++..+|.++..++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677788888888888888888887777776655443
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.38 E-value=57 Score=22.96 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
|..-.-.+|.||.+.|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567888888888888888877764
No 430
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.13 E-value=2e+02 Score=22.10 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC--CchhHHHHHHHHhhcCCch-HHHHHHHHH
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN--NCGYHVLLSNIYANAGRWE-DVERTRSLM 519 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 519 (644)
|....-.+...+...|+++.|.+.+-.+++.+|+ +...-..|+.++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4445555666667777777777777776666543 3455566666666666533 344444433
No 431
>PRK10941 hypothetical protein; Provisional
Probab=35.87 E-value=4e+02 Score=25.56 Aligned_cols=70 Identities=10% Similarity=-0.053 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYG 431 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 431 (644)
+.+-.+|.+.++++.|+...+.+... .|+ ..-+.--.-.|.+.|.+..|..=++...+...-.|+.....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34444555555555555555555552 332 22233333345555555555555554444333334443333
No 432
>PRK09169 hypothetical protein; Validated
Probab=35.79 E-value=1.1e+03 Score=30.44 Aligned_cols=506 Identities=10% Similarity=0.023 Sum_probs=282.0
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhc----CCCC------CcchHHHHHHHHHcCCCchHHHHHHHHh----hHCC---
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKY----VDKN------NVFSWNSVIADLARGGDSVEALRAFSSM----RKLS--- 68 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~----~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g--- 68 (644)
...+..++++++|..+-..+...-+.+ ...| +......+++++++.-+.......-..+ ...+
T Consensus 162 ~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~ 241 (2316)
T PRK09169 162 AISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLL 241 (2316)
T ss_pred hHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH
Confidence 456778888999988766655444433 1111 4445666788888776655444333332 2211
Q ss_pred CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH---h----CCCCChhHHHHHHHHHHhCCChHHHHHH----HhhCCCC
Q 006457 69 LTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFI---F----GFHRDVFVSSALIDMYSKCGELSDARKL----FDEIPQR 137 (644)
Q Consensus 69 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~----g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~ 137 (644)
...+......+++++++-.+-+.+.+.-..+.. . ...-+..-....+++++|-.+-+.+... -..+...
T Consensus 242 ~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~ 321 (2316)
T PRK09169 242 QSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQE 321 (2316)
T ss_pred HhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 123556788899999988776655443333221 1 1123455566778888887665432222 2222111
Q ss_pred -----CCCeecHHHHHHHHHhCCChhHH----HHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHH
Q 006457 138 -----IRNIVSWTSMLTGYVQNDNAREA----LLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTE 208 (644)
Q Consensus 138 -----~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 208 (644)
.-|..-....++++++-.+.+.+ ..+-..+... . ...-.-|..-+...+.++++.++.+...
T Consensus 322 ~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~-~--------~l~~~~npQelANaLnALSKwp~~~~cr 392 (2316)
T PRK09169 322 RGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARD-A--------GLRRALNAQELANALNALSKWPDEEACR 392 (2316)
T ss_pred hhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhC-h--------hhhhhCCHHHHHHHHHHHHcCCCchHHH
Confidence 23455566778888887765543 3333333210 0 1112457778899999999988765433
Q ss_pred ----HHHHHHHHh-CC--CCCccHHHHHHHHHHhcCCHHHHHHHHhcC----C-------CCCHhHHHHHHHHHHHCCCh
Q 006457 209 ----GAHGFVIKR-GF--DSEVGVGNTLIDAYARGGHVDVSRKVFDGM----I-------EKDAVTWNSIIAIYAQNGLA 270 (644)
Q Consensus 209 ----~~~~~~~~~-g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-------~~~~~~~~~li~~~~~~g~~ 270 (644)
.+...+... +. .-|..-....+++++|-+.-+.+.+....+ . .-+..-....+.++.+-++.
T Consensus 393 ~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~ 472 (2316)
T PRK09169 393 AAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDE 472 (2316)
T ss_pred HHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCch
Confidence 333332221 21 235556677788999887665443333322 1 12555666777888877664
Q ss_pred hH----HHHHHHHhHHc--CCCCCChhhHHHHHHHHHccccHHHHHHHHHHH----HH---hCCCCchhHHHHHHHHHHh
Q 006457 271 AE----ALDVFDQMVKS--TDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQV----IK---MDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 271 ~~----A~~~~~~m~~~--~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~---~~~~~~~~~~~~li~~~~~ 337 (644)
.. +..+...+... ..-..+..-+..++.++++.+..+.....-..+ .. .--..+..-....+.+++|
T Consensus 473 ~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSK 552 (2316)
T PRK09169 473 AACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSK 552 (2316)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHc
Confidence 42 23344444211 012345667888999999998876654433322 22 1123456666778889999
Q ss_pred cCCHHH----HHHHHHhcCC-------CChhhHHHHHHHHHhcCCHH----HHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 006457 338 CGQVDL----ARKAFNQMKE-------KNVRSWTAMIAGYGMHCRAR----EALDLFYKMIKAG---VRPNYITFVSVLS 399 (644)
Q Consensus 338 ~g~~~~----A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~g---~~p~~~t~~~ll~ 399 (644)
-.+.+. |..+...+.. -|...+...+.++.+-++.. .+..+.....+.. -.-|..-+..+++
T Consensus 553 WP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~Ln 632 (2316)
T PRK09169 553 WPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLN 632 (2316)
T ss_pred CCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHH
Confidence 776433 3334444332 25566778888998877643 2334444443321 1347788899999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCC------CCChhHHHHHHHHHhhcCCHHHHHHHHH----hCC------CCCCHHHHH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNI------EPGVEHYGCMVDLLGRAGKLKEAYDLIE----GMK------VKADFVVWG 463 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~~~~----~~~------~~p~~~~~~ 463 (644)
++++-.+.+........+.....- ..+......++.++.|-.+...+.+... ++. ..-|..-..
T Consensus 633 ALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lA 712 (2316)
T PRK09169 633 GLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVA 712 (2316)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHH
Confidence 999998877766555544332211 2356667777889988887655333322 221 122555666
Q ss_pred HHHHHHHhcCChhHHHH----HHHHhhc---c-CCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 464 SLLGACRIHKNVDLGEI----AAKKLFE---L-EPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~----~~~~~~~---~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
..++++.+--+-+.... +...+.+ + .--++.......|++++--+-..+.+.+-.+.
T Consensus 713 n~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La 777 (2316)
T PRK09169 713 NALNALSKWPEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKWPQEPACQQAALLLA 777 (2316)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77777776554333333 3333322 1 11233445556667777666666666555554
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.13 E-value=34 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 369 HCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 369 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
.|.-.+|-.+|++|++.|-+||. |+.|+.++
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35556789999999999999875 45566544
No 434
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.84 E-value=64 Score=30.97 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=41.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 437 LGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
..+.|+.++|..+|+.. ...|+ +....-+......+++.-+|...|-+++.+.|.+..+.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34678888888888754 44453 3344444455556677788888888888888887655443
No 435
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.67 E-value=3.6e+02 Score=24.94 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=27.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH----HHhhcCCHHHHHHHHHh
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD----LLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~ 452 (644)
-+......|++++|++.......+ -+..|...+-.|.. -+.|.|..++|+++.+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344445666666666666655322 23333322221111 24566777777777764
No 436
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.37 E-value=3.4e+02 Score=30.60 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 448 DLIEGMKVKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 448 ~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
.+|...+.+|- ..+..+-++.+.+++|+..|-.+..+++++.|..+.
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 45777777774 446777889999999999999999999999987654
No 437
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.28 E-value=5.8e+02 Score=28.44 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=52.3
Q ss_pred hHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006457 271 AEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (644)
++....+....+..|+..+......++... .|++..+..+++++...|- ...+. +.+..++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~-------------e~V~~lLG- 242 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAE-------------NDVRQMIG- 242 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCH-------------HHHHHHHc-
Confidence 444455555544567766766666666554 4778888777776654331 01111 11111111
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006457 351 MKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390 (644)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (644)
..+......|+.++.. ++...++.++++|...|+.+.
T Consensus 243 --~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 243 --AVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred --ccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 1122233344444444 667777777777777776554
No 438
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=33.24 E-value=8.3e+02 Score=28.42 Aligned_cols=268 Identities=8% Similarity=-0.068 Sum_probs=151.8
Q ss_pred HHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHH
Q 006457 128 RKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVT 207 (644)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 207 (644)
..+.+.+.. +|...-..-+..+.+.+.. .++..+.... . .+|...=...+.++...+.....
T Consensus 624 ~~L~~~L~D--~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL------------~---D~d~~VR~~Aa~aL~~l~~~~~~ 685 (897)
T PRK13800 624 AELAPYLAD--PDPGVRRTAVAVLTETTPP-GFGPALVAAL------------G---DGAAAVRRAAAEGLRELVEVLPP 685 (897)
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHhhhcch-hHHHHHHHHH------------c---CCCHHHHHHHHHHHHHHHhccCc
Confidence 344555555 6776666677777777654 4555555543 1 22333333444444333221111
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCC
Q 006457 208 EGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVK 287 (644)
Q Consensus 208 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 287 (644)
...+..+.+ .+|..+-...+.++...+.-+ ...+...+.++|...-...+.++.+.+..+. +.... -.
T Consensus 686 ~~~L~~~L~---~~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D 753 (897)
T PRK13800 686 APALRDHLG---SPDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TD 753 (897)
T ss_pred hHHHHHHhc---CCCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cC
Confidence 122222222 356677777777776554221 2345556677787777777777777655432 22222 23
Q ss_pred CChhhHHHHHHHHHccccHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChhhHHHHHHH
Q 006457 288 CNAVTLSAVLLAIAHLGVLRL-GKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLAR-KAFNQMKEKNVRSWTAMIAG 365 (644)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~ 365 (644)
++...-.....++...+..+. +...+..+.+ .++..+-.+.+.++.+.|..+.+. .+...+.++|...-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 455555666667766665432 2333444433 456778888899999998876553 34455556676666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 436 (644)
+...+. .++...+..+.+ .|+...-...+.++.+......+...+..+.. .+|..+-..-..+
T Consensus 831 L~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~a 893 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARRA 893 (897)
T ss_pred HHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 777765 456677777664 67777777778888776434456666666644 2444444333333
No 439
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.19 E-value=69 Score=30.76 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=36.0
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA 457 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 457 (644)
-+.|+.++|..+|+... .+.|+ +....-+........++-+|-+++-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 47899999999999884 45664 555555555555556677777766554 4555
No 440
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=32.60 E-value=1.6e+02 Score=21.99 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCccc
Q 006457 552 HEKIYEYLEELNVKLQEVGYVTDMTSV 578 (644)
Q Consensus 552 ~~~i~~~~~~l~~~~~~~g~~p~~~~~ 578 (644)
..++...+.+-..+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345666778888899999999998876
No 441
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.28 E-value=5.5e+02 Score=26.07 Aligned_cols=29 Identities=7% Similarity=-0.236 Sum_probs=20.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
.+.+.+++..|.++|+++.+...+|+...
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 44556788888888888887765555443
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.76 E-value=90 Score=28.80 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=50.4
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
....+|.+.+.+++.+++++-|.....|.-++..-.++|+.+.|.+.+++..+-..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 35678999999999999999999999999999999999999999999998876543
No 443
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.64 E-value=6e+02 Score=26.26 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
....+|+-|...|+..+..+.++.+-
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcC
Confidence 34568888999999998888887763
No 444
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.54 E-value=2.4e+02 Score=21.54 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 006457 71 PTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEI 134 (644)
Q Consensus 71 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 134 (644)
|....|...++.......-+. ++|+.....|+..|..+|..++....-+=..+...++++.|
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred ChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 445
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.27 E-value=4.8e+02 Score=25.08 Aligned_cols=31 Identities=16% Similarity=-0.070 Sum_probs=17.6
Q ss_pred ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC
Q 006457 474 NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (644)
|.++|...++++-+.+. ......++ .+...|
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 66677777777766655 34444444 444444
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.25 E-value=2e+02 Score=31.14 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCCCC--C---cchHHHHHHHHHcCCCchH------HHHHHHHhhHCCCCCCcccHH
Q 006457 9 VSSVVSNVDKHSTNTNLTTLFNKYVDKN--N---VFSWNSVIADLARGGDSVE------ALRAFSSMRKLSLTPTRSTFP 77 (644)
Q Consensus 9 ~~~l~~~~~~~~~~~~A~~~f~~~~~~p--~---~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~g~~p~~~~~~ 77 (644)
-.+|..+|..+|++-.+.++++.+...| + ...+|..|+.+.++|.++- |.+++++.. +.-|.-||.
T Consensus 31 ~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~a 107 (1117)
T COG5108 31 TASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYA 107 (1117)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHH
Confidence 3489999999999999999998875432 2 3468999999999997652 333444433 555888999
Q ss_pred HHHHHHhccCCcHHHHHHHHHHH
Q 006457 78 CAIKSCSALHDLHSGKQAHQQAF 100 (644)
Q Consensus 78 ~ll~~~~~~~~~~~a~~~~~~~~ 100 (644)
.++.+....-.-..+.-++...+
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHH
Confidence 88877654333333344444443
No 447
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.20 E-value=1.5e+02 Score=30.36 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=30.8
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 449 LIEGMKVKADF--VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 449 ~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
+|...+++|.. .++++-++.+.+++|+..|-...++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 45555666643 366777788889999999999999999999864
No 448
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=31.12 E-value=5.4e+02 Score=25.60 Aligned_cols=88 Identities=6% Similarity=-0.055 Sum_probs=44.1
Q ss_pred HHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHH-HHHHHHhhHCCCCCCcccHHHHHHHHhccCCcH
Q 006457 12 VVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEA-LRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLH 90 (644)
Q Consensus 12 l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 90 (644)
+.+.++|.++.+.+..+-..++.-|.. ...++..++-...-.+.. ..+++.+... ||......++++.+......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~-vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPE-VLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChH-HHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 344455555555455555555544333 244555554443333332 2333333332 67777777777777665555
Q ss_pred HHHHHHHHHHHhC
Q 006457 91 SGKQAHQQAFIFG 103 (644)
Q Consensus 91 ~a~~~~~~~~~~g 103 (644)
.....+..++...
T Consensus 248 ~~~~~i~~~L~~~ 260 (340)
T PF12069_consen 248 LVAILIDALLQSP 260 (340)
T ss_pred HHHHHHHHHhcCc
Confidence 5555455555443
No 449
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.06 E-value=4.5e+02 Score=24.61 Aligned_cols=135 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG 405 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 405 (644)
.....-+..|.+.-++.-|...++++.+| .--.+.+--|.+..+..---++.+-....+++-+...+..++ +...|
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiEP--IQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIEP--IQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhhh--HHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Q ss_pred CHHHHHHHHHHHhhhcCC-----------CCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHH
Q 006457 406 LVQEGWHWLNTMGHEFNI-----------EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM---KVKADFVVWGSL 465 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l 465 (644)
+..+|+..++.-...+|. .|.+.....++..+. .+++++|.+++.+. ++.|....-+.+
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 450
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=30.49 E-value=2.4e+02 Score=29.50 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC--------CchhHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN--------NCGYHV 497 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 497 (644)
++..|-..+.-|...+++++|.++.+-.+ +...|.++......+.+...++.+|.-+.+++.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34556677777888899999998887664 5668888888888888888888877777664321 011122
Q ss_pred HHHHHHhhcCCchHHHHHHH
Q 006457 498 LLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~ 517 (644)
-++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 23333445677777766553
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.18 E-value=2.1e+02 Score=25.16 Aligned_cols=36 Identities=8% Similarity=-0.185 Sum_probs=15.6
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 006457 88 DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGE 123 (644)
Q Consensus 88 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (644)
+.-.|.++++.+.+.+...+..|--.-+..+...|-
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334445555555554443333333333444444443
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.14 E-value=7.5e+02 Score=26.90 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (644)
......++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.++|+...+..+-+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344455566666666666666666554332211 12344455556666666555544443
No 453
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.99 E-value=4.1e+02 Score=23.90 Aligned_cols=58 Identities=10% Similarity=0.191 Sum_probs=41.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCC--------------CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 395 VSVLSACSHAGLVQEGWHWLNTMGHEFNI--------------EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 395 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.+++..|-+.-++.+++++++.|.+ ..+ .+.-...|.-...+.++|.+|-|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 4567778888889999998888843 222 223345566677788888888888888865
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.43 E-value=1.9e+02 Score=27.30 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.2
Q ss_pred hcCChh
Q 006457 471 IHKNVD 476 (644)
Q Consensus 471 ~~g~~~ 476 (644)
..|+.+
T Consensus 230 ~~~~~~ 235 (247)
T PF11817_consen 230 RLGDVE 235 (247)
T ss_pred HhCCHH
Confidence 333333
No 455
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=29.40 E-value=22 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=17.1
Q ss_pred eeEEEecCCcccccccccccCC
Q 006457 620 REIVVRDSKRFHYFKDGLCSCG 641 (644)
Q Consensus 620 ~~~~~~~~~~~h~~~~g~~~~~ 641 (644)
..|=+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4677889999999999986543
No 456
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.85 E-value=5.2e+02 Score=24.65 Aligned_cols=159 Identities=14% Similarity=0.042 Sum_probs=75.3
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHccCCHH-HHH
Q 006457 337 KCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMI----KAGVRPNYITFVSVLSACSHAGLVQ-EGW 411 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~ll~a~~~~g~~~-~a~ 411 (644)
+.+++++|.+++..- ...+.++|+...|.++-.-|. +.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 455666666665432 223444555544444333322 3455555555444444443332111 111
Q ss_pred HHHHHHhh--hcCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 412 HWLNTMGH--EFNIE--PGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 412 ~~~~~~~~--~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.+.+.+++ +.+-. -++.....+...|.+.|++.+|+.-|-.-. .|+...+..++......|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 11222111 11222 367888889999999999999998876543 2233332223333333333
Q ss_pred cCCCCchhHHH-HHHHHhhcCCchHHHHHHHHHhhC
Q 006457 488 LEPNNCGYHVL-LSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 488 ~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|.+...|.. ..--|...|+...|...++...++
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333333332 223477789999999988887765
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.46 E-value=3.3e+02 Score=29.54 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=13.5
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHH
Q 006457 193 SVLSACSRVTVNGVTEGAHGFVIK 216 (644)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~~~~~~~ 216 (644)
+++.+|...|++..+.++++..+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 555556666655555555555443
No 458
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.40 E-value=67 Score=30.98 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCCC
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSLT 70 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 70 (644)
||..|..-.+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 556666666666666666666666666543
No 459
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.15 E-value=1.4e+02 Score=21.26 Aligned_cols=50 Identities=6% Similarity=0.038 Sum_probs=29.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 353 EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.+....++.++..++...-.++++..+.++.+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34455566677777766667777777777777763 445555555544443
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.08 E-value=1.8e+02 Score=23.20 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=12.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHh
Q 006457 259 SIIAIYAQNGLAAEALDVFDQM 280 (644)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~m 280 (644)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455566666666666666655
No 461
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.83 E-value=8.1e+02 Score=26.55 Aligned_cols=111 Identities=6% Similarity=-0.098 Sum_probs=58.1
Q ss_pred chHHHHHHhhcCCCCCcchHHHHHHH-----HHcCCCchHHHHHHHHhhH-------CCCCCCcccHHHHHHHHhccC--
Q 006457 22 NTNLTTLFNKYVDKNNVFSWNSVIAD-----LARGGDSVEALRAFSSMRK-------LSLTPTRSTFPCAIKSCSALH-- 87 (644)
Q Consensus 22 ~~~A~~~f~~~~~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-- 87 (644)
...|.+.++......++..-..+... +....+.+.|+..|+.+.+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 35566666666555444443333333 3345677788888877765 44 3334444555554432
Q ss_pred ---CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-CCChHHHHHHHhhCCC
Q 006457 88 ---DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSK-CGELSDARKLFDEIPQ 136 (644)
Q Consensus 88 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~ 136 (644)
+...|..++....+.|. |+....-..+..... ..+...|.++|.....
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 45567777777777663 333332222222222 2345566666665443
No 462
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.68 E-value=21 Score=34.74 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=71.8
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEH 549 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~ 549 (644)
...|+++.|++.+-.+++++|.....|.--++++.+++++..|++-.....+.+.....++-|- + ..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr---g---------~A- 191 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR---G---------YA- 191 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh---h---------HH-
Confidence 3567899999999999999999999999999999999999999987776665443222222211 0 00
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCccccccCch
Q 006457 550 PQHEKIYEYLEELNVKLQEVGYVTDMTSVIHDVDQ 584 (644)
Q Consensus 550 ~~~~~i~~~~~~l~~~~~~~g~~p~~~~~~~~~~~ 584 (644)
-.....+......+..-.+.+|.++.+.++..+..
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDYDEANSATLKEVFP 226 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccccHHHHHHHHHhcc
Confidence 11223344456666777788999988888776644
No 463
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.96 E-value=4.8e+02 Score=23.67 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV-EHYGCMV 434 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 434 (644)
+...+.++..+...|+++.|-+.|.-+.... +.|..+. +.-|.+++..- +-.+.. .-+..|+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~------------W~iG~eIL~~~----~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSL------------WGIGAEILMRR----GEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhc------------chHHHHHHHcC----CCcchHHHHHHHHH
Confidence 3467788888999999999999999988753 4454432 33333333322 111221 3444555
Q ss_pred HHHhhcCCHHHHHHHHHhCC--------CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhcc--CC---CCchhHHH
Q 006457 435 DLLGRAGKLKEAYDLIEGMK--------VKAD---FVVWGSLLGACRIHKNVDLGEIAAKKLFEL--EP---NNCGYHVL 498 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~--------~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p---~~~~~~~~ 498 (644)
..|.......+........+ ..|. ...|..++..-.+....+.+.++.+++-++ .| +++..|..
T Consensus 104 ~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i 183 (199)
T PF04090_consen 104 SFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFI 183 (199)
T ss_pred HHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 55553333333222111111 1121 114555555544444556677777777774 33 34555554
Q ss_pred HHHH
Q 006457 499 LSNI 502 (644)
Q Consensus 499 l~~~ 502 (644)
.+-+
T Consensus 184 ~~m~ 187 (199)
T PF04090_consen 184 RGMC 187 (199)
T ss_pred HHHH
Confidence 4433
No 464
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=26.94 E-value=1.3e+02 Score=30.43 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=8.8
Q ss_pred HHHHHhhcCCHHHHHHH
Q 006457 433 MVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~ 449 (644)
|+-.|.+.++.+-|+.-
T Consensus 234 lv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNH 250 (569)
T ss_pred HHHhhhhcCCCchHHHH
Confidence 44455555555555543
No 465
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.83 E-value=5.3e+02 Score=24.14 Aligned_cols=50 Identities=16% Similarity=0.027 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhhc-----cCCCCchhHHHHHH----HHhhcCCchHHHHHHHHHhhCCC
Q 006457 475 VDLGEIAAKKLFE-----LEPNNCGYHVLLSN----IYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 475 ~~~a~~~~~~~~~-----~~p~~~~~~~~l~~----~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
.+.|...|+++.+ +.|.+|....+..+ .|-..|+.++|.++-+...+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3567777777655 56777654443333 24568999999999888766543
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.73 E-value=4e+02 Score=25.88 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 228 TLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
.++..+.+.+++....+.+..+ ..+..-...+..+...|++..|++++.+..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445555555555555555554 233444556777788899999988888776
No 467
>PF15161 Neuropep_like: Neuropeptide-like
Probab=26.60 E-value=23 Score=23.80 Aligned_cols=17 Identities=29% Similarity=0.737 Sum_probs=12.1
Q ss_pred hccccCCcchhhHhhhhc
Q 006457 600 NLRVCGDCHTVIRLISKV 617 (644)
Q Consensus 600 ~l~~~~~~~~~~~~~s~~ 617 (644)
.-|-|.|||.+- |+.+.
T Consensus 12 esRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCchhhHHHH-HHHHH
Confidence 357899999764 66544
No 468
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.44 E-value=3e+02 Score=21.14 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 006457 337 KCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (644)
...+.+.+.++++.++.++..+|..+..++...|.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34566777778887777777777777777765544
No 469
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.42 E-value=6.2e+02 Score=24.75 Aligned_cols=83 Identities=16% Similarity=-0.085 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006457 406 LVQEGWHWLNTMGHEFNI---EPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAA 482 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 482 (644)
-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 356788888888663112 44666777777888888887776666666655567788889999999999999988999
Q ss_pred HHhhcc
Q 006457 483 KKLFEL 488 (644)
Q Consensus 483 ~~~~~~ 488 (644)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 988884
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.31 E-value=2.7e+02 Score=23.73 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=31.1
Q ss_pred HHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 006457 62 SSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGE 123 (644)
Q Consensus 62 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (644)
+.+++.|++++.. =..+++.+...++.-.|.++|+.+.+.+...+..|--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444555544322 223445555555556666666666666555444433334555555554
No 471
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=1.6e+02 Score=28.09 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+=+++.+.++++.|....++.+.++|.++.-..--+-+|.+.|-..-|.+-+....+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 336777888999999999999999999987777888889999999999888877554
No 472
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=25.92 E-value=31 Score=17.88 Aligned_cols=10 Identities=50% Similarity=0.806 Sum_probs=7.0
Q ss_pred cchhhHhhhh
Q 006457 607 CHTVIRLISK 616 (644)
Q Consensus 607 ~~~~~~~~s~ 616 (644)
.|+++|+||.
T Consensus 12 lhe~ikli~n 21 (23)
T PF08225_consen 12 LHEVIKLINN 21 (23)
T ss_pred HHHHHHHHhc
Confidence 4777777764
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.91 E-value=4.3e+02 Score=27.13 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE-----------KNVRSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
.-.|++.++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888776641 134566677778888888888888887754
No 474
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.65 E-value=8.9e+02 Score=26.30 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=36.2
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-HhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIEKD-AVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
....+..|+...... +.++-..+++++.. . ...|..++++....|-.....-+.+.+.
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~ 367 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIK 367 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344566666665444 45666666666644 3 5678888888888887655555555554
No 475
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.75 E-value=2.3e+02 Score=24.91 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=35.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 382 MIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
+...|++++..-. .++..+...+..-.|.++++.+.+. +...+..|----++.+...|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 3455666655443 3444444445555677777777543 555565555555667777776653
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.59 E-value=3.4e+02 Score=23.13 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKL 443 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 443 (644)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.++ +...+..|--.-++.+...|-+
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 344455555444322 3444444444445566666666432 3333333333344555555543
No 477
>PF15469 Sec5: Exocyst complex component Sec5
Probab=24.46 E-value=5e+02 Score=23.00 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=16.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhh
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGH 419 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~ 419 (644)
.-|.-|...|+++.+...|.++..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445666777777777777776643
No 478
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.43 E-value=6.7e+02 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=15.6
Q ss_pred CHHHHHHHHhcC--CCCCHhHHHHHHHHH
Q 006457 238 HVDVSRKVFDGM--IEKDAVTWNSIIAIY 264 (644)
Q Consensus 238 ~~~~A~~~~~~~--~~~~~~~~~~li~~~ 264 (644)
.++.+.++...+ .+.+...|..++..+
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 356677777766 345667777666543
No 479
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.29 E-value=4.8e+02 Score=24.57 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 362 MIAGYGMHCRAREALDLFYKMIK----AG-VRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
|..-|...|++++|+++|+.+.. .| ..+...+...++.+..+.|+.+....+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44456666666666666666532 22 1223344445555556666666555443
No 480
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.11 E-value=5.9e+02 Score=23.67 Aligned_cols=112 Identities=10% Similarity=0.052 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKEKNVRS--WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
.+++++|.+.+- .|.+.. ..-++.++...|+.+.|+.+++.+.-..- +......++.+ ...+.+.+|+.+-+
T Consensus 91 ~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 355666666553 332211 12366667767777777777776432211 12222222333 34467777777665
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADF 459 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 459 (644)
..... -....+..++..+.....-....+.+-.+|..+..
T Consensus 165 ~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 165 SYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred hCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 54221 11345666666655433223334444455555443
No 481
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.86 E-value=2.2e+02 Score=31.21 Aligned_cols=145 Identities=13% Similarity=0.134 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHccCCHHHHHHHHHHHhhhc-CCCCC
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT----------FVSVLSACSHAGLVQEGWHWLNTMGHEF-NIEPG 426 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~ 426 (644)
+-..|+-.|....+++..+++.+.+.. -||..- |...++--.+-|+-++|+...-.+++.. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 445566677777888888888888776 344322 2233333345577777777666655432 34555
Q ss_pred hhH-----HHHH--HHHHhhcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 427 VEH-----YGCM--VDLLGRAGKLKEAYDLIEGM-KVKADFV---VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 427 ~~~-----~~~l--i~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
... |.-+ -..|.-++..+.|.+.|++. ..+|+.. -+.+|+.+-.++ ++..+++- ..
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~--Fens~Elq-----------~I 346 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH--FENSLELQ-----------QI 346 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh--ccchHHHH-----------HH
Confidence 322 2111 12234445566666666655 4455432 333444333222 11111111 12
Q ss_pred HHHHHHHHhhcCCchHHHHHHHH
Q 006457 496 HVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
-+.|.+.+.+.|..+.-.++|+-
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV 369 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDV 369 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhH
Confidence 23455667777777776666654
No 482
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=23.77 E-value=5.2e+02 Score=27.68 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC-CCchhHHHHHHHHhh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP-NNCGYHVLLSNIYAN 505 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 505 (644)
...-.+|-+-+....++.-|.++-.+.++. ....|.+..-+|.+.+++..|.+-|++.+++.- +-|....-+.+. ..
T Consensus 556 ~~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ie 633 (1141)
T KOG1811|consen 556 PAASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IE 633 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hc
Confidence 334556666666777788888877777653 445899999999999999999999999998762 223333444443 23
Q ss_pred cC---CchHHHHHHHHH
Q 006457 506 AG---RWEDVERTRSLM 519 (644)
Q Consensus 506 ~g---~~~~a~~~~~~m 519 (644)
.| ++..+.++++..
T Consensus 634 Ggpp~dVq~Vrem~dhl 650 (1141)
T KOG1811|consen 634 GGPPRDVQDVREMLDHL 650 (1141)
T ss_pred CCCcchHHHHHHHHHHh
Confidence 33 344444444443
No 483
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.54 E-value=7.2e+02 Score=24.55 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCCChhHHHHHHHH-H----hhcCCHHHHHHHHHhC
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHE---FNIEPGVEHYGCMVDL-L----GRAGKLKEAYDLIEGM 453 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~~-~----~~~g~~~~A~~~~~~~ 453 (644)
..+......|++.|+.+.|.+.+.....+ .|.+.|+..+..=+.. | .-...++.|..++++-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34455556677777777777666654321 2444444443322211 1 1123455555555554
No 484
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=23.32 E-value=93 Score=24.84 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCccc
Q 006457 553 EKIYEYLEELNVKLQEVGYVTDMTSV 578 (644)
Q Consensus 553 ~~i~~~~~~l~~~~~~~g~~p~~~~~ 578 (644)
...|..-..+..+|+..||+|+..+.
T Consensus 48 ~~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 48 YKLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhc
Confidence 34566667788999999999999875
No 485
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.32 E-value=3.5e+02 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=10.5
Q ss_pred HHHccCCHHHHHHHHHHHh
Q 006457 400 ACSHAGLVQEGWHWLNTMG 418 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~ 418 (644)
.....|.+++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444566666666555554
No 486
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.19 E-value=1e+02 Score=23.35 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=31.2
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCC
Q 006457 27 TLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHD 88 (644)
Q Consensus 27 ~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 88 (644)
.+++.+.++ ++.+....-...+...+.+.+.+++..+...| ..+|.....++...|.
T Consensus 20 ~v~~~L~~~-~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 20 YLWDHLLSR-GVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHhc-CCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 345555555 55555544444445555666666666666655 3455555555554443
No 487
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.82 E-value=5.7e+02 Score=23.08 Aligned_cols=56 Identities=11% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006457 295 AVLLAIAHLGVLRLGKCIHDQVIKMDL--------------EESVIVGTSIIDMYCKCGQVDLARKAFNQ 350 (644)
Q Consensus 295 ~ll~a~~~~~~~~~a~~i~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (644)
+++-.|.+..++.+++.+++.+.+..+ .+.-...|.....+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455566777778888888877765422 22334555666666777777777766664
No 488
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.77 E-value=9.6e+02 Score=25.66 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=55.4
Q ss_pred HHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 272 EALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 272 ~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
+....+....+..|+..+......++... .|++..+..+++++...| . ...+ .+...+++
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~-~-~~It-------------~~~V~~~l--- 241 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYG-N-GKVL-------------IADVKTML--- 241 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcC-C-CCcC-------------HHHHHHHH---
Confidence 33444444443567766666665555443 477888877776655432 0 1111 11112221
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006457 352 KEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 392 (644)
...+......|+.+... |+.+.++.++++|...|..|...
T Consensus 242 g~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 242 GTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 22333344445555544 78889999999999988777543
No 489
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.83 E-value=9.5e+02 Score=25.28 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------CChhhHHHHHH
Q 006457 297 LLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE------------KNVRSWTAMIA 364 (644)
Q Consensus 297 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~ 364 (644)
..++....++..++.-.+...... ..+....-.--..+--.|++.+|.+++....- ..-+.||.|..
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHhcCCHHHHHHHHHHHHH-------cCCCC----------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh
Q 006457 365 GYGMHCRAREALDLFYKMIK-------AGVRP----------NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV 427 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~-------~g~~p----------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 427 (644)
.+.+.|.+.-+..+|.+..+ .|++| .....-...-.+.+.|++-.|.+.|....+ -+..++
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vfh~nP 369 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VFHRNP 369 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HHhcCc
Q ss_pred hHHHHHHHHHh
Q 006457 428 EHYGCMVDLLG 438 (644)
Q Consensus 428 ~~~~~li~~~~ 438 (644)
..|-.|...|.
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
No 490
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=21.82 E-value=7.5e+02 Score=25.46 Aligned_cols=91 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH--------HhcCCHHHHHH
Q 006457 275 DVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMY--------CKCGQVDLARK 346 (644)
Q Consensus 275 ~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~--------~~~g~~~~A~~ 346 (644)
++-.-+. ...+.||.++.+.+...++..-..+....+++-..+.+ .|-...+-+||-.- .+...-+++.+
T Consensus 169 elc~~Ld-tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ik 246 (669)
T KOG3636|consen 169 ELCNHLD-TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIK 246 (669)
T ss_pred HHhhhhh-ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHH
Q ss_pred HHHhcCC----CChhhHHHHHHHHH
Q 006457 347 AFNQMKE----KNVRSWTAMIAGYG 367 (644)
Q Consensus 347 ~~~~~~~----~~~~~~~~li~~~~ 367 (644)
+++.|+. .|+.-+-+|..-|+
T Consensus 247 fLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 247 FLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHHcCchhcccccchhHHHHHHHHh
No 491
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.47 E-value=4.7e+02 Score=21.55 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCHHHHH-------HHHHhCC-CCCC-HHHHHHHH----HHHHhcCChhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAY-------DLIEGMK-VKAD-FVVWGSLL----GACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~-------~~~~~~~-~~p~-~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~ 487 (644)
.+..|..++.+.|++++++ .+|++=+ ...| ...|-+.+ .++...|..++|...|+..-+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3444455555555555433 3343321 2222 33454433 445566777777777766543
No 492
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.37 E-value=8.9e+02 Score=24.78 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCC------CCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 224 GVGNTLIDAYARGGHVDVSRKVFDGMIE------KDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
..+.-+.+.|..+|+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|........+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3466777888888888888888877532 123345556666666667777666666654
No 493
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=21.12 E-value=4.4e+02 Score=21.16 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=49.4
Q ss_pred CCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHh
Q 006457 201 VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQM 280 (644)
Q Consensus 201 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 280 (644)
....++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|- -.+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 3446778888888777653 23333344455677889999995555556778888886654 45778888888888777
Q ss_pred H
Q 006457 281 V 281 (644)
Q Consensus 281 ~ 281 (644)
.
T Consensus 96 a 96 (116)
T PF09477_consen 96 A 96 (116)
T ss_dssp C
T ss_pred H
Confidence 5
No 494
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=20.84 E-value=96 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHhHHcCCCCCChh
Q 006457 267 NGLAAEALDVFDQMVKSTDVKCNAV 291 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~~p~~~ 291 (644)
+-+++.|+..|.++.....++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4478888888888874456666654
No 495
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=20.60 E-value=1e+03 Score=25.16 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=47.5
Q ss_pred HHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCC
Q 006457 57 ALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIF-GFHRDVFVSSALIDMYSKCGELSDARKLFDEIP 135 (644)
Q Consensus 57 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 135 (644)
...+|+..... ..-|...|..-+..|.+.+.+.+...++..|+.. +..||..++.+.= -|-..-.++.|..+|..-.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHh
Confidence 34445444432 2337777777787777777778888888888764 3344544444322 2333334788888877665
Q ss_pred CC
Q 006457 136 QR 137 (644)
Q Consensus 136 ~~ 137 (644)
..
T Consensus 168 R~ 169 (568)
T KOG2396|consen 168 RF 169 (568)
T ss_pred hc
Confidence 54
No 496
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=20.59 E-value=3.6e+02 Score=19.97 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=34.3
Q ss_pred HHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcc---cHHHHHHHHhccCCcHH
Q 006457 15 NVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRS---TFPCAIKSCSALHDLHS 91 (644)
Q Consensus 15 ~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~ 91 (644)
..++.|+++-...+++.-... +. -.+ .+...+..|+ .++++.+.+.|..++.. -++.+..+ +..++
T Consensus 3 ~A~~~~~~~~~~~ll~~~~~~-~~-~~~-~l~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~--- 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEKGADI-NL-GNT-ALHYAAENGN----LEIVKLLLENGADINSQDKNGNTALHYA-AENGN--- 71 (89)
T ss_dssp HHHHTTTHHHHHHHHHTTSTT-TS-SSB-HHHHHHHTTT----HHHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH---
T ss_pred HHHHcCCHHHHHHHHHCcCCC-CC-CCC-HHHHHHHcCC----HHHHHHHHHhcccccccCCCCCCHHHHH-HHcCC---
Confidence 345566666666666532222 22 112 3333344555 23444444555555433 22223222 23333
Q ss_pred HHHHHHHHHHhCCCCC
Q 006457 92 GKQAHQQAFIFGFHRD 107 (644)
Q Consensus 92 a~~~~~~~~~~g~~~~ 107 (644)
.++.+.+++.|..++
T Consensus 72 -~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 -LEIVKLLLEHGADVN 86 (89)
T ss_dssp -HHHHHHHHHTTT-TT
T ss_pred -HHHHHHHHHcCCCCC
Confidence 334455555555444
No 497
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=4.6e+02 Score=28.43 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
...|--+|....+.+.|.++++++.+.+|.++.....+..+....|+-++|..+.......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3444445555566666666666666666666666666666666666666666666655443
No 498
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=20.51 E-value=46 Score=25.89 Aligned_cols=15 Identities=40% Similarity=0.946 Sum_probs=11.4
Q ss_pred cccccccccccCCCC
Q 006457 629 RFHYFKDGLCSCGDY 643 (644)
Q Consensus 629 ~~h~~~~g~~~~~~~ 643 (644)
|=-..+.|.|||.+|
T Consensus 43 rdYIl~~gfCSCp~~ 57 (117)
T COG5431 43 RDYILEGGFCSCPDF 57 (117)
T ss_pred cceEEEcCcccCHHH
Confidence 333678889999886
No 499
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=20.37 E-value=5e+02 Score=21.52 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=65.8
Q ss_pred CchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHH----HHhccC-------Cc
Q 006457 21 TNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIK----SCSALH-------DL 89 (644)
Q Consensus 21 ~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----~~~~~~-------~~ 89 (644)
++.-|..++.+....| .+...++.+.+..-.-.++++..++....-.|..+ .+..+. .|-... ..
T Consensus 4 Np~IA~~~l~~l~~s~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~ef-l~~yI~~cI~~ce~~kd~~~q~R~V 79 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEF-LHMYISNCIKSCESIKDKYMQNRLV 79 (126)
T ss_pred cHHHHHHHHHHHcCCc---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHhhcccccccchh
Confidence 4455666666665553 26677777777777777888888777665444333 233333 322211 12
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 006457 90 HSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEI 134 (644)
Q Consensus 90 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 134 (644)
...-.++..+++.++......+..+-..+.+..+..+|..+|+-+
T Consensus 80 Rlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 80 RLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 233345566667776655666666666777777788888877654
No 500
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.35 E-value=7.9e+02 Score=23.77 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYI-------TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 434 (644)
+..-..+.+++++|+..+.+....|+..|.. |...+..-|...|+...-.+....... .+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------------~m 75 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------------AM 75 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------------HH
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 435 DLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
.-+.+..-..-...+|++.+..|| ++.-.+..|... .+.|.+--+.+++. ..-.-++.++.+.|++.+|..
T Consensus 76 ~~ftk~k~~KiirtLiekf~~~~d--sl~dqi~v~~~~--iewA~rEkr~fLr~-----~Le~Kli~l~y~~~~Ysdala 146 (421)
T COG5159 76 EDFTKPKITKIIRTLIEKFPYSSD--SLEDQIKVLTAL--IEWADREKRKFLRL-----ELECKLIYLLYKTGKYSDALA 146 (421)
T ss_pred HHhcchhHHHHHHHHHHhcCCCCc--cHHHHHHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHH
Q 006457 515 TRSLM 519 (644)
Q Consensus 515 ~~~~m 519 (644)
++..+
T Consensus 147 lIn~l 151 (421)
T COG5159 147 LINPL 151 (421)
T ss_pred HHHHH
Done!