Query 006457
Match_columns 644
No_of_seqs 773 out of 4358
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 01:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.7E-42 1.6E-46 374.2 38.7 482 16-522 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.6E-40 1.2E-44 359.3 29.7 484 2-505 80-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.3E-28 1.1E-32 254.2 22.8 183 255-439 27-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-25 5.6E-30 229.6 37.4 374 80-508 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.8E-27 6.1E-32 248.6 20.0 201 181-404 18-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.6E-24 8.9E-29 220.6 41.4 352 147-521 5-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 5.7E-23 2E-27 218.9 31.7 441 41-499 9-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.1E-22 3.8E-27 216.6 28.9 428 75-522 8-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.7E-21 1.9E-25 199.8 37.5 323 186-518 24-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.6E-21 8.7E-26 207.4 34.7 427 38-522 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1E-20 3.5E-25 197.9 31.7 350 107-511 25-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.3E-20 1.5E-24 197.8 32.5 442 6-498 25-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1E-17 3.6E-22 168.9 33.7 302 189-521 4-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.8E-17 6.1E-22 167.2 34.5 289 187-505 36-352 (359)
15 3hym_B Cell division cycle pro 99.8 4.3E-17 1.5E-21 162.4 30.4 287 219-509 18-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 9E-18 3.1E-22 167.0 22.8 344 120-516 15-366 (449)
17 1b89_A Protein (clathrin heavy 99.8 6.6E-17 2.2E-21 160.9 27.0 345 17-453 14-369 (449)
18 2ooe_A Cleavage stimulation fa 99.8 1.8E-15 6.2E-20 161.4 40.2 395 107-522 12-492 (530)
19 3hym_B Cell division cycle pro 99.8 1.7E-16 5.7E-21 158.1 28.2 264 252-521 20-298 (330)
20 1fch_A Peroxisomal targeting s 99.8 7.3E-17 2.5E-21 163.6 24.1 281 233-518 35-355 (368)
21 2xm6_A Protein corresponding t 99.8 2.1E-15 7.1E-20 159.3 35.9 352 121-505 56-452 (490)
22 1xi4_A Clathrin heavy chain; a 99.8 1.8E-14 6.1E-19 159.4 43.2 382 72-514 984-1376(1630)
23 2ooe_A Cleavage stimulation fa 99.7 2.4E-15 8.1E-20 160.5 33.6 402 72-491 12-495 (530)
24 4eqf_A PEX5-related protein; a 99.7 2.1E-16 7.1E-21 160.1 21.1 261 253-518 64-352 (365)
25 1xi4_A Clathrin heavy chain; a 99.7 3E-13 1E-17 149.8 46.7 279 120-447 1088-1375(1630)
26 4eqf_A PEX5-related protein; a 99.7 3E-16 1E-20 158.9 21.6 231 289-522 64-310 (365)
27 3mkr_A Coatomer subunit epsilo 99.7 8.5E-15 2.9E-19 142.6 30.9 270 231-515 7-287 (291)
28 1fch_A Peroxisomal targeting s 99.7 4.2E-16 1.4E-20 158.0 22.0 275 238-522 16-314 (368)
29 4g1t_A Interferon-induced prot 99.7 1.1E-15 3.7E-20 160.7 25.9 370 107-532 50-469 (472)
30 2xm6_A Protein corresponding t 99.7 8.1E-14 2.8E-18 147.0 39.0 352 139-524 37-434 (490)
31 3cv0_A Peroxisome targeting si 99.7 1.2E-15 4.2E-20 151.5 22.8 255 225-519 23-312 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.7 3.7E-17 1.3E-21 175.2 9.4 131 321-452 123-261 (1134)
33 3mkr_A Coatomer subunit epsilo 99.7 3.9E-15 1.3E-19 145.0 22.5 246 261-522 6-264 (291)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.1E-17 1.4E-21 174.8 7.5 149 7-155 128-286 (1134)
35 3cv0_A Peroxisome targeting si 99.7 3.1E-14 1.1E-18 141.3 26.1 257 187-452 20-311 (327)
36 4g1t_A Interferon-induced prot 99.6 5.6E-13 1.9E-17 139.9 31.4 382 73-500 51-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 6.8E-14 2.3E-18 133.6 21.3 212 297-522 12-236 (258)
38 2pl2_A Hypothetical conserved 99.6 6.2E-14 2.1E-18 130.2 19.7 194 322-519 2-211 (217)
39 3uq3_A Heat shock protein STI1 99.6 1E-13 3.6E-18 132.3 20.3 234 255-501 6-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.2E-13 7.5E-18 131.5 20.6 240 267-516 18-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 4.3E-13 1.5E-17 129.3 18.8 247 224-506 4-268 (272)
42 2ho1_A Type 4 fimbrial biogene 99.5 2.8E-12 9.7E-17 122.0 22.4 197 325-523 37-239 (252)
43 3e4b_A ALGK; tetratricopeptide 99.5 2.2E-11 7.5E-16 126.4 30.3 370 80-520 10-419 (452)
44 2vq2_A PILW, putative fimbrial 99.5 3.8E-12 1.3E-16 118.5 22.1 196 324-521 7-210 (225)
45 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.6E-17 124.1 18.1 173 327-502 59-236 (243)
46 2ho1_A Type 4 fimbrial biogene 99.5 6E-12 2.1E-16 119.7 23.0 208 254-497 37-247 (252)
47 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.2E-16 118.0 26.5 225 253-491 5-254 (273)
48 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.4E-16 117.9 26.5 224 289-524 5-253 (273)
49 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4.2E-17 123.6 17.6 197 323-522 21-222 (243)
50 3e4b_A ALGK; tetratricopeptide 99.5 4.7E-12 1.6E-16 131.5 22.9 311 194-524 9-353 (452)
51 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4.1E-16 115.1 23.0 173 325-499 42-222 (225)
52 2h6f_A Protein farnesyltransfe 99.5 5.7E-12 2E-16 126.8 22.1 246 253-505 96-365 (382)
53 2pl2_A Hypothetical conserved 99.5 8.6E-12 2.9E-16 115.7 21.7 190 256-453 7-211 (217)
54 3u4t_A TPR repeat-containing p 99.5 2E-11 6.9E-16 117.5 25.1 227 188-419 3-249 (272)
55 3sf4_A G-protein-signaling mod 99.5 3.6E-12 1.2E-16 130.6 20.7 195 327-521 89-335 (406)
56 4e6h_A MRNA 3'-END-processing 99.4 2.9E-10 1E-14 122.1 34.2 423 53-494 47-576 (679)
57 4a1s_A PINS, partner of inscut 99.4 1.5E-12 5E-17 134.0 15.9 259 260-521 54-371 (411)
58 3ro2_A PINS homolog, G-protein 99.4 4.3E-12 1.5E-16 126.1 18.5 260 260-522 11-332 (338)
59 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-11 5.6E-16 110.5 19.8 165 355-522 4-170 (184)
60 2h6f_A Protein farnesyltransfe 99.4 1.1E-11 3.6E-16 124.9 20.2 225 291-521 98-347 (382)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.5E-12 2.5E-16 120.7 18.2 218 301-523 16-245 (275)
62 3sf4_A G-protein-signaling mod 99.4 4.4E-12 1.5E-16 129.9 17.5 290 189-510 10-364 (406)
63 4abn_A Tetratricopeptide repea 99.4 2E-12 7E-17 135.1 14.7 209 306-519 84-318 (474)
64 4a1s_A PINS, partner of inscut 99.3 1.7E-11 6E-16 125.9 16.9 263 229-491 54-375 (411)
65 3ro2_A PINS homolog, G-protein 99.3 3.7E-11 1.3E-15 119.2 18.4 268 195-491 12-335 (338)
66 4e6h_A MRNA 3'-END-processing 99.3 4.9E-09 1.7E-13 112.7 35.1 418 91-523 50-571 (679)
67 3vtx_A MAMA; tetratricopeptide 99.3 8.8E-11 3E-15 105.6 18.2 167 324-493 4-175 (184)
68 2ond_A Cleavage stimulation fa 99.3 4.7E-10 1.6E-14 110.2 24.9 218 271-493 33-275 (308)
69 3nf1_A KLC 1, kinesin light ch 99.3 9.1E-12 3.1E-16 122.4 12.1 238 253-521 26-306 (311)
70 3ulq_A Response regulator aspa 99.3 4.9E-11 1.7E-15 121.3 17.6 193 327-520 145-366 (383)
71 2ond_A Cleavage stimulation fa 99.3 6.4E-10 2.2E-14 109.2 24.2 209 240-453 33-267 (308)
72 3ulq_A Response regulator aspa 99.3 1.5E-10 5.1E-15 117.7 19.9 292 198-489 22-369 (383)
73 4gyw_A UDP-N-acetylglucosamine 99.3 7.5E-11 2.6E-15 128.3 18.3 161 356-521 9-173 (723)
74 3as5_A MAMA; tetratricopeptide 99.2 1.8E-10 6E-15 103.4 16.2 160 327-521 10-172 (186)
75 3nf1_A KLC 1, kinesin light ch 99.2 2.6E-11 8.7E-16 119.2 11.2 239 222-491 26-310 (311)
76 1hz4_A MALT regulatory protein 99.2 7.3E-09 2.5E-13 104.7 28.2 260 261-521 21-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.2 6.7E-10 2.3E-14 99.5 18.1 159 290-452 8-169 (186)
78 4i17_A Hypothetical protein; T 99.2 7.5E-10 2.6E-14 103.4 18.8 205 288-503 5-224 (228)
79 3q15_A PSP28, response regulat 99.2 9.8E-10 3.3E-14 111.4 20.5 193 327-520 143-363 (378)
80 4abn_A Tetratricopeptide repea 99.2 4.2E-10 1.4E-14 117.6 18.1 178 341-522 84-287 (474)
81 3q15_A PSP28, response regulat 99.2 9.1E-09 3.1E-13 104.2 27.3 305 184-488 6-365 (378)
82 4i17_A Hypothetical protein; T 99.2 7E-10 2.4E-14 103.6 17.5 184 326-521 8-208 (228)
83 1hz4_A MALT regulatory protein 99.1 1.4E-08 4.9E-13 102.5 25.3 259 231-490 22-324 (373)
84 3edt_B KLC 2, kinesin light ch 99.1 6.9E-10 2.4E-14 107.0 13.7 197 325-521 43-280 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.0 2.4E-09 8.3E-14 116.4 15.4 163 323-490 7-176 (723)
86 1qqe_A Vesicular transport pro 99.0 7.1E-09 2.4E-13 100.8 16.1 201 305-520 32-267 (292)
87 1qqe_A Vesicular transport pro 99.0 1.6E-08 5.6E-13 98.2 18.0 171 326-496 78-277 (292)
88 3qky_A Outer membrane assembly 99.0 3.9E-08 1.3E-12 93.8 19.7 205 323-568 13-247 (261)
89 3edt_B KLC 2, kinesin light ch 98.9 3.2E-08 1.1E-12 95.2 18.3 162 327-488 87-281 (283)
90 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.7E-12 90.0 21.9 243 231-496 21-290 (310)
91 2fo7_A Synthetic consensus TPR 98.9 3.2E-08 1.1E-12 82.9 15.6 128 358-520 3-130 (136)
92 3qky_A Outer membrane assembly 98.9 2.7E-08 9.1E-13 94.9 16.5 201 288-510 13-249 (261)
93 4ga2_A E3 SUMO-protein ligase 98.9 1.6E-09 5.6E-14 93.5 7.1 140 364-508 5-149 (150)
94 2pzi_A Probable serine/threoni 98.9 5.6E-08 1.9E-12 106.2 20.5 168 336-508 402-583 (681)
95 2fo7_A Synthetic consensus TPR 98.9 2.8E-08 9.4E-13 83.4 14.3 95 429-523 3-99 (136)
96 2yhc_A BAMD, UPF0169 lipoprote 98.9 1E-07 3.5E-12 88.5 19.0 179 326-524 5-215 (225)
97 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.8E-12 90.7 19.1 240 261-523 20-283 (310)
98 3qou_A Protein YBBN; thioredox 98.9 5.8E-08 2E-12 94.0 17.1 174 343-520 104-282 (287)
99 2uy1_A Cleavage stimulation fa 98.8 4.4E-06 1.5E-10 87.0 29.2 202 271-486 196-411 (493)
100 3rjv_A Putative SEL1 repeat pr 98.8 3.2E-07 1.1E-11 84.2 18.0 162 354-524 16-199 (212)
101 2r5s_A Uncharacterized protein 98.8 7.3E-08 2.5E-12 85.6 13.1 155 362-520 12-171 (176)
102 4ga2_A E3 SUMO-protein ligase 98.8 1.1E-08 3.8E-13 88.2 7.2 121 398-521 4-128 (150)
103 3gyz_A Chaperone protein IPGC; 98.7 7.3E-08 2.5E-12 82.7 11.8 101 422-522 30-133 (151)
104 2pzi_A Probable serine/threoni 98.7 3.8E-07 1.3E-11 99.6 20.3 189 301-495 402-609 (681)
105 2vsy_A XCC0866; transferase, g 98.7 9.8E-08 3.3E-12 102.3 14.9 160 338-500 2-169 (568)
106 2ifu_A Gamma-SNAP; membrane fu 98.7 3.2E-07 1.1E-11 89.7 17.0 219 267-514 4-253 (307)
107 3urz_A Uncharacterized protein 98.7 2.4E-07 8.1E-12 84.8 15.1 127 361-492 59-190 (208)
108 2vsy_A XCC0866; transferase, g 98.7 2.2E-07 7.5E-12 99.6 15.8 147 303-453 2-154 (568)
109 2vgx_A Chaperone SYCD; alterna 98.7 7.8E-08 2.7E-12 82.6 10.0 101 422-522 15-118 (148)
110 3dra_A Protein farnesyltransfe 98.7 5.9E-06 2E-10 79.6 23.7 149 370-521 124-286 (306)
111 2uy1_A Cleavage stimulation fa 98.7 5.7E-06 2E-10 86.2 25.0 368 18-453 6-410 (493)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.7E-06 5.8E-11 79.2 18.3 145 328-492 9-154 (213)
113 2qfc_A PLCR protein; TPR, HTH, 98.6 7.4E-07 2.5E-11 86.4 16.6 163 358-520 77-264 (293)
114 4gco_A Protein STI-1; structur 98.6 1.6E-07 5.4E-12 78.1 10.1 94 428-521 14-109 (126)
115 3u3w_A Transcriptional activat 98.6 3.1E-06 1E-10 82.0 20.9 159 362-520 81-264 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6E-07 2.1E-11 82.3 14.9 125 394-523 9-151 (213)
117 3qou_A Protein YBBN; thioredox 98.6 1.7E-06 5.7E-11 83.6 17.8 156 294-451 121-279 (287)
118 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.3E-07 2.2E-11 83.1 14.2 184 290-494 4-219 (225)
119 4gco_A Protein STI-1; structur 98.6 6.5E-07 2.2E-11 74.3 12.3 114 387-502 8-124 (126)
120 3dra_A Protein farnesyltransfe 98.6 2.5E-05 8.7E-10 75.2 25.2 224 271-501 50-301 (306)
121 2r5s_A Uncharacterized protein 98.6 7.1E-07 2.4E-11 79.1 13.3 155 328-487 9-172 (176)
122 3urz_A Uncharacterized protein 98.6 2.2E-06 7.4E-11 78.3 16.6 135 329-467 58-198 (208)
123 2xcb_A PCRH, regulatory protei 98.6 6.6E-07 2.3E-11 76.1 12.1 100 423-522 13-115 (142)
124 3rjv_A Putative SEL1 repeat pr 98.5 3.1E-06 1.1E-10 77.6 17.4 172 309-490 5-199 (212)
125 1na0_A Designed protein CTPR3; 98.5 1.1E-06 3.6E-11 72.3 12.5 114 392-507 10-125 (125)
126 2c2l_A CHIP, carboxy terminus 98.5 2.6E-07 8.8E-12 89.0 9.9 186 325-522 4-199 (281)
127 1a17_A Serine/threonine protei 98.5 1.1E-06 3.9E-11 76.6 13.2 126 393-520 15-144 (166)
128 2ifu_A Gamma-SNAP; membrane fu 98.5 6.1E-07 2.1E-11 87.7 12.4 197 302-520 3-222 (307)
129 2vyi_A SGTA protein; chaperone 98.5 9.5E-07 3.2E-11 73.3 11.7 118 391-510 12-131 (131)
130 2lni_A Stress-induced-phosphop 98.5 1.5E-06 5E-11 72.5 12.7 116 390-508 15-133 (133)
131 3u3w_A Transcriptional activat 98.4 2.8E-05 9.4E-10 75.2 22.1 128 219-351 42-181 (293)
132 2qfc_A PLCR protein; TPR, HTH, 98.4 1E-05 3.5E-10 78.3 18.5 162 327-488 77-266 (293)
133 1p5q_A FKBP52, FK506-binding p 98.4 1.9E-06 6.6E-11 85.2 13.2 143 356-520 147-292 (336)
134 3upv_A Heat shock protein STI1 98.4 1.5E-06 5.2E-11 72.0 10.3 96 427-522 4-101 (126)
135 2e2e_A Formate-dependent nitri 98.4 1.1E-06 3.9E-11 77.8 9.5 117 404-522 23-144 (177)
136 2kck_A TPR repeat; tetratricop 98.4 2.1E-06 7.2E-11 68.9 10.3 99 426-524 5-108 (112)
137 4f3v_A ESX-1 secretion system 98.4 1.1E-06 3.6E-11 82.8 9.2 136 360-500 106-248 (282)
138 2fbn_A 70 kDa peptidylprolyl i 98.4 3.8E-07 1.3E-11 82.7 5.8 169 333-522 12-186 (198)
139 1hxi_A PEX5, peroxisome target 98.3 1.5E-06 5.2E-11 71.4 8.4 95 429-523 19-115 (121)
140 4f3v_A ESX-1 secretion system 98.3 8.7E-06 3E-10 76.6 14.4 181 337-522 18-237 (282)
141 3q49_B STIP1 homology and U bo 98.3 3.8E-06 1.3E-10 70.5 11.1 98 425-522 7-106 (137)
142 2e2e_A Formate-dependent nitri 98.3 2.7E-06 9.2E-11 75.3 10.6 129 367-498 21-154 (177)
143 2vgx_A Chaperone SYCD; alterna 98.3 1.1E-06 3.8E-11 75.2 7.7 106 391-498 21-128 (148)
144 3gw4_A Uncharacterized protein 98.3 4.3E-06 1.5E-10 75.7 12.0 151 337-487 4-175 (203)
145 3sz7_A HSC70 cochaperone (SGT) 98.3 3.1E-06 1E-10 73.9 10.2 92 429-520 13-106 (164)
146 1elw_A TPR1-domain of HOP; HOP 98.3 1.2E-05 4.1E-10 65.0 13.0 108 393-502 6-115 (118)
147 3gyz_A Chaperone protein IPGC; 98.3 5.5E-06 1.9E-10 70.9 11.2 104 387-493 31-138 (151)
148 1na0_A Designed protein CTPR3; 98.3 6.2E-06 2.1E-10 67.6 10.7 96 427-522 9-106 (125)
149 1elw_A TPR1-domain of HOP; HOP 98.3 6.4E-06 2.2E-10 66.7 10.7 97 426-522 3-101 (118)
150 2lni_A Stress-induced-phosphop 98.3 5.8E-06 2E-10 68.8 10.6 98 425-522 14-113 (133)
151 1a17_A Serine/threonine protei 98.2 2.1E-05 7.2E-10 68.3 14.4 125 359-486 16-144 (166)
152 2dba_A Smooth muscle cell asso 98.2 1.7E-05 5.7E-10 67.4 13.4 111 391-504 28-144 (148)
153 3gw4_A Uncharacterized protein 98.2 8.4E-06 2.9E-10 73.7 12.0 47 235-281 4-53 (203)
154 1wao_1 Serine/threonine protei 98.2 6.3E-06 2.1E-10 85.7 12.5 116 400-518 15-135 (477)
155 2dba_A Smooth muscle cell asso 98.2 8.7E-06 3E-10 69.2 11.3 97 426-522 27-128 (148)
156 4gcn_A Protein STI-1; structur 98.2 5E-06 1.7E-10 68.9 9.1 95 427-521 8-111 (127)
157 2xcb_A PCRH, regulatory protei 98.2 7.9E-06 2.7E-10 69.3 10.2 106 393-500 20-127 (142)
158 3upv_A Heat shock protein STI1 98.2 1.3E-05 4.5E-10 66.2 11.3 108 393-502 6-121 (126)
159 3q7a_A Farnesyltransferase alp 98.2 0.00013 4.3E-09 71.1 19.7 226 257-521 57-330 (349)
160 3dss_A Geranylgeranyl transfer 98.2 0.00049 1.7E-08 66.6 23.6 228 266-502 41-318 (331)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 1.6E-05 5.6E-10 69.2 12.0 108 391-500 11-120 (164)
162 2c2l_A CHIP, carboxy terminus 98.2 2.1E-05 7.2E-10 75.5 13.8 190 290-489 4-200 (281)
163 3rkv_A Putative peptidylprolyl 98.2 1E-05 3.5E-10 70.3 10.5 63 459-521 63-125 (162)
164 2hr2_A Hypothetical protein; a 98.2 6.1E-06 2.1E-10 70.0 8.5 62 460-521 58-130 (159)
165 2vyi_A SGTA protein; chaperone 98.1 1.2E-05 4.1E-10 66.5 10.3 97 426-522 11-109 (131)
166 1wao_1 Serine/threonine protei 98.1 3.5E-05 1.2E-09 80.1 14.5 114 366-483 16-134 (477)
167 2xev_A YBGF; tetratricopeptide 98.1 1.2E-05 4.1E-10 66.6 8.8 89 433-521 8-104 (129)
168 4b4t_Q 26S proteasome regulato 98.1 3.9E-05 1.3E-09 78.8 14.2 162 359-520 58-243 (434)
169 3q7a_A Farnesyltransferase alp 98.1 0.0018 6.1E-08 63.0 24.8 176 227-406 58-257 (349)
170 3q49_B STIP1 homology and U bo 98.1 2.4E-05 8.2E-10 65.5 10.4 100 390-491 8-109 (137)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.2E-05 1.1E-09 80.0 13.0 144 356-521 268-414 (457)
172 2kck_A TPR repeat; tetratricop 98.0 2.4E-05 8.2E-10 62.5 9.7 93 398-492 13-110 (112)
173 3dss_A Geranylgeranyl transfer 98.0 0.00093 3.2E-08 64.7 22.1 211 307-521 47-303 (331)
174 1elr_A TPR2A-domain of HOP; HO 98.0 1.7E-05 5.7E-10 65.6 8.7 95 427-521 4-107 (131)
175 3k9i_A BH0479 protein; putativ 98.0 3.7E-06 1.3E-10 68.6 4.5 82 440-521 3-89 (117)
176 1elr_A TPR2A-domain of HOP; HO 98.0 5.2E-05 1.8E-09 62.5 11.2 105 396-503 9-122 (131)
177 1p5q_A FKBP52, FK506-binding p 98.0 7.2E-05 2.5E-09 73.8 13.8 138 304-446 127-283 (336)
178 3ro3_A PINS homolog, G-protein 98.0 4.1E-05 1.4E-09 65.9 10.6 135 358-521 11-157 (164)
179 4b4t_Q 26S proteasome regulato 98.0 0.00016 5.6E-09 74.0 16.7 161 293-453 58-242 (434)
180 2fbn_A 70 kDa peptidylprolyl i 98.0 7.9E-05 2.7E-09 67.1 12.6 93 429-521 40-150 (198)
181 4gcn_A Protein STI-1; structur 97.9 9E-05 3.1E-09 61.2 11.7 58 359-417 11-68 (127)
182 2xev_A YBGF; tetratricopeptide 97.9 9.8E-05 3.3E-09 60.9 11.9 100 398-500 9-117 (129)
183 2hr2_A Hypothetical protein; a 97.9 1.1E-05 3.6E-10 68.5 5.7 71 429-499 59-142 (159)
184 1hxi_A PEX5, peroxisome target 97.9 5.9E-05 2E-09 61.7 9.5 93 397-492 23-118 (121)
185 2l6j_A TPR repeat-containing p 97.9 6.5E-06 2.2E-10 66.1 3.6 92 426-517 3-102 (111)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 2.3E-05 7.7E-10 77.5 7.9 147 356-522 179-328 (338)
187 2if4_A ATFKBP42; FKBP-like, al 97.9 4.1E-05 1.4E-09 75.6 9.6 152 325-493 179-333 (338)
188 3ro3_A PINS homolog, G-protein 97.9 5.7E-05 1.9E-09 65.0 9.4 127 325-451 9-153 (164)
189 1dce_A Protein (RAB geranylger 97.8 0.0008 2.7E-08 71.2 19.7 169 340-511 44-244 (567)
190 1ihg_A Cyclophilin 40; ppiase 97.8 8E-05 2.7E-09 74.4 11.0 136 357-514 224-362 (370)
191 3rkv_A Putative peptidylprolyl 97.8 5.7E-05 1.9E-09 65.5 8.4 76 427-502 63-141 (162)
192 3n71_A Histone lysine methyltr 97.8 5.7E-05 2E-09 78.0 9.7 124 401-524 319-466 (490)
193 3k9i_A BH0479 protein; putativ 97.8 2.6E-05 8.8E-10 63.4 5.6 92 404-496 3-98 (117)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00022 7.6E-09 73.6 13.4 64 459-522 317-380 (457)
195 3ma5_A Tetratricopeptide repea 97.7 8.8E-05 3E-09 58.2 7.9 64 458-521 6-69 (100)
196 1ihg_A Cyclophilin 40; ppiase 97.7 0.00013 4.5E-09 72.8 10.9 112 391-521 223-335 (370)
197 1na3_A Designed protein CTPR2; 97.7 0.00013 4.3E-09 55.8 8.1 81 427-507 9-91 (91)
198 2kat_A Uncharacterized protein 97.6 0.00012 4E-09 59.2 7.0 77 445-521 3-81 (115)
199 3bee_A Putative YFRE protein; 97.5 0.00036 1.2E-08 53.6 8.6 69 456-524 3-74 (93)
200 3n71_A Histone lysine methyltr 97.5 0.00012 4.1E-09 75.6 7.4 114 436-567 318-449 (490)
201 1zu2_A Mitochondrial import re 97.5 6.8E-05 2.3E-09 63.4 4.1 85 439-523 14-121 (158)
202 3qwp_A SET and MYND domain-con 97.5 0.00015 5E-09 73.8 7.1 116 434-567 294-427 (429)
203 2l6j_A TPR repeat-containing p 97.4 0.00048 1.6E-08 54.8 7.5 65 458-522 3-67 (111)
204 3qww_A SET and MYND domain-con 97.3 0.00016 5.3E-09 73.4 4.7 103 440-560 311-431 (433)
205 1zu2_A Mitochondrial import re 97.3 0.00047 1.6E-08 58.3 6.9 122 368-523 14-148 (158)
206 1klx_A Cysteine rich protein B 97.3 0.0028 9.5E-08 53.0 11.5 89 433-523 31-127 (138)
207 1dce_A Protein (RAB geranylger 97.2 0.0068 2.3E-07 64.0 16.0 148 370-521 43-220 (567)
208 3lvg_A Clathrin heavy chain 1; 97.2 0.00014 4.7E-09 71.9 2.6 436 3-515 51-534 (624)
209 1na3_A Designed protein CTPR2; 97.1 0.0011 3.7E-08 50.4 6.9 65 458-522 8-72 (91)
210 3ly7_A Transcriptional activat 97.1 0.011 3.6E-07 57.5 14.6 138 354-493 192-344 (372)
211 1klx_A Cysteine rich protein B 97.1 0.0026 8.8E-08 53.2 9.1 112 370-490 9-128 (138)
212 2kat_A Uncharacterized protein 97.0 0.0021 7.3E-08 51.5 8.1 79 410-491 4-85 (115)
213 3qww_A SET and MYND domain-con 96.9 0.004 1.4E-07 63.0 10.8 94 404-497 311-425 (433)
214 3ma5_A Tetratricopeptide repea 96.9 0.0042 1.4E-07 48.3 8.3 61 356-417 7-67 (100)
215 3qwp_A SET and MYND domain-con 96.9 0.0066 2.3E-07 61.5 11.9 102 398-499 294-416 (429)
216 3mkq_A Coatomer beta'-subunit; 96.7 0.096 3.3E-06 58.2 21.4 115 231-381 660-774 (814)
217 2kc7_A BFR218_protein; tetratr 96.7 0.0063 2.2E-07 47.0 8.1 64 433-496 6-72 (99)
218 2kc7_A BFR218_protein; tetratr 96.6 0.0034 1.1E-07 48.6 6.1 59 465-523 6-65 (99)
219 1wy6_A Hypothetical protein ST 96.6 0.17 6E-06 40.5 15.3 140 367-525 18-157 (172)
220 3mkq_A Coatomer beta'-subunit; 96.5 0.091 3.1E-06 58.4 19.2 42 234-277 610-652 (814)
221 1pc2_A Mitochondria fission pr 96.4 0.015 5.1E-07 48.5 8.9 65 457-521 30-99 (152)
222 3u64_A Protein TP_0956; tetrat 96.2 0.014 4.7E-07 54.3 8.1 86 443-528 179-275 (301)
223 3ly7_A Transcriptional activat 95.8 0.23 7.9E-06 48.2 15.1 71 355-430 276-346 (372)
224 2v5f_A Prolyl 4-hydroxylase su 95.8 0.045 1.5E-06 42.7 8.6 71 429-499 7-86 (104)
225 3mkq_B Coatomer subunit alpha; 95.0 1.5 5E-05 37.5 16.5 103 231-351 13-115 (177)
226 1pc2_A Mitochondria fission pr 94.9 0.086 2.9E-06 43.9 7.8 40 459-498 71-110 (152)
227 3bee_A Putative YFRE protein; 94.9 0.15 5.3E-06 38.6 8.8 70 424-493 3-77 (93)
228 1qsa_A Protein (soluble lytic 94.8 5 0.00017 42.3 29.6 316 152-500 17-356 (618)
229 1nzn_A CGI-135 protein, fissio 94.5 0.16 5.6E-06 40.6 8.1 63 458-520 34-101 (126)
230 3mkq_B Coatomer subunit alpha; 94.2 2.1 7E-05 36.6 14.8 130 14-168 13-142 (177)
231 1wy6_A Hypothetical protein ST 93.8 2.2 7.4E-05 34.3 14.5 125 192-322 9-157 (172)
232 4gns_B Protein CSD3, chitin bi 93.5 0.22 7.6E-06 53.5 9.4 55 466-520 344-398 (754)
233 3lvg_A Clathrin heavy chain 1; 93.3 0.016 5.3E-07 57.7 0.1 238 107-377 53-325 (624)
234 4ady_A RPN2, 26S proteasome re 93.1 12 0.00042 41.1 27.6 250 232-486 383-656 (963)
235 3u64_A Protein TP_0956; tetrat 93.1 1.2 4E-05 41.5 12.2 111 338-453 134-266 (301)
236 1y8m_A FIS1; mitochondria, unk 93.1 1.6 5.5E-05 35.5 11.5 66 456-521 36-105 (144)
237 2v5f_A Prolyl 4-hydroxylase su 93.0 0.31 1.1E-05 37.7 7.4 64 458-521 4-74 (104)
238 1nzn_A CGI-135 protein, fissio 91.9 1.2 4.1E-05 35.6 9.3 74 425-498 33-113 (126)
239 4ady_A RPN2, 26S proteasome re 91.0 22 0.00074 39.3 24.6 267 118-402 384-672 (963)
240 4fhn_B Nucleoporin NUP120; pro 90.4 5.9 0.0002 45.6 17.1 166 225-409 814-989 (1139)
241 4b4t_P 26S proteasome regulato 89.8 8.9 0.0003 38.6 16.0 161 193-354 142-324 (445)
242 4h7y_A Dual specificity protei 88.7 1.5 5.2E-05 36.0 7.4 35 390-426 12-52 (161)
243 3o48_A Mitochondria fission 1 88.5 2.2 7.4E-05 34.3 8.0 65 457-521 38-106 (134)
244 3lpz_A GET4 (YOR164C homolog); 88.0 19 0.00064 34.3 18.8 138 110-268 37-181 (336)
245 2p58_C Putative type III secre 87.3 7.5 0.00026 29.2 9.5 87 305-396 22-108 (116)
246 2wpv_A GET4, UPF0363 protein Y 86.6 22 0.00074 33.6 17.5 171 110-317 35-215 (312)
247 2uwj_G Type III export protein 86.6 7 0.00024 29.3 9.1 87 305-396 21-107 (115)
248 4h7y_A Dual specificity protei 85.6 4.2 0.00015 33.4 8.3 107 1-108 8-129 (161)
249 2ff4_A Probable regulatory pro 84.9 6.6 0.00022 38.8 11.4 70 360-430 175-248 (388)
250 1v54_E Cytochrome C oxidase po 84.1 4.2 0.00015 30.7 7.0 63 53-116 25-87 (109)
251 2qx5_A Nucleoporin NIC96; mRNA 84.0 47 0.0016 35.1 19.1 45 109-154 154-199 (661)
252 1v54_E Cytochrome C oxidase po 83.7 6.1 0.00021 29.8 7.7 63 371-435 25-87 (109)
253 3ffl_A Anaphase-promoting comp 83.7 1.7 5.9E-05 36.5 5.4 122 385-520 12-149 (167)
254 3ffl_A Anaphase-promoting comp 83.0 7.3 0.00025 32.7 9.0 53 331-383 26-90 (167)
255 3txn_A 26S proteasome regulato 83.0 37 0.0013 33.3 16.4 56 397-452 105-164 (394)
256 4gns_B Protein CSD3, chitin bi 81.6 8.5 0.00029 41.4 11.3 51 401-454 347-398 (754)
257 2ff4_A Probable regulatory pro 81.4 2.9 9.8E-05 41.4 7.2 67 462-528 174-245 (388)
258 4fhn_B Nucleoporin NUP120; pro 80.0 21 0.0007 41.1 14.6 166 111-309 815-990 (1139)
259 1zbp_A Hypothetical protein VP 76.2 4.4 0.00015 37.1 6.0 57 436-492 6-64 (273)
260 2y69_E Cytochrome C oxidase su 76.1 13 0.00043 29.9 7.7 63 53-116 68-130 (152)
261 3lpz_A GET4 (YOR164C homolog); 74.8 59 0.002 30.9 23.1 166 328-521 38-215 (336)
262 1qsa_A Protein (soluble lytic 74.7 88 0.003 32.8 32.2 375 13-428 79-486 (618)
263 3o48_A Mitochondria fission 1 74.6 24 0.00083 28.2 9.2 35 461-495 80-114 (134)
264 2y69_E Cytochrome C oxidase su 74.5 15 0.00052 29.4 7.7 60 374-435 71-130 (152)
265 1wdy_A 2-5A-dependent ribonucl 74.2 39 0.0013 30.8 12.7 117 11-136 7-130 (285)
266 1y8m_A FIS1; mitochondria, unk 74.0 34 0.0012 27.8 10.7 36 461-496 79-114 (144)
267 1zbp_A Hypothetical protein VP 73.3 26 0.00089 32.0 10.3 119 365-493 6-134 (273)
268 2uwj_G Type III export protein 71.7 29 0.001 26.0 8.5 86 202-293 20-105 (115)
269 1wdy_A 2-5A-dependent ribonucl 69.1 67 0.0023 29.1 13.3 47 303-349 192-240 (285)
270 2qx5_A Nucleoporin NIC96; mRNA 68.5 1.2E+02 0.0042 31.9 16.7 22 437-458 548-569 (661)
271 1n11_A Ankyrin; clathrin, BAND 63.3 1.2E+02 0.0041 29.9 15.3 20 12-31 17-36 (437)
272 3ltm_A Alpha-REP4; protein eng 63.2 74 0.0025 27.5 18.9 48 324-371 94-141 (211)
273 4b4t_P 26S proteasome regulato 62.5 1.3E+02 0.0044 30.0 21.6 95 359-453 140-244 (445)
274 2wpv_A GET4, UPF0363 protein Y 61.6 1.1E+02 0.0037 28.8 21.6 167 328-521 36-216 (312)
275 2p58_C Putative type III secre 60.7 51 0.0018 24.8 9.3 86 202-293 21-106 (116)
276 3ltj_A Alpharep-4; protein eng 58.0 89 0.003 26.7 20.0 153 221-383 26-178 (201)
277 4b4t_R RPN7, 26S proteasome re 57.9 36 0.0012 34.0 9.1 91 429-519 133-234 (429)
278 4b4t_R RPN7, 26S proteasome re 57.3 52 0.0018 32.8 10.1 54 329-382 135-194 (429)
279 3hra_A Ankyrin repeat family p 56.9 86 0.0029 26.6 10.7 37 208-244 158-196 (201)
280 1n11_A Ankyrin; clathrin, BAND 54.7 52 0.0018 32.6 9.9 109 48-165 21-134 (437)
281 3mv2_A Coatomer subunit alpha; 54.5 1.2E+02 0.0043 28.4 11.2 61 449-523 195-257 (325)
282 3eu9_A Huntingtin-interacting 51.5 1E+02 0.0034 27.0 10.4 17 15-31 15-31 (240)
283 3ltm_A Alpha-REP4; protein eng 51.3 1.2E+02 0.004 26.1 19.7 171 220-403 30-200 (211)
284 3esl_A Checkpoint serine/threo 48.3 1.4E+02 0.0046 25.9 9.9 104 445-574 62-171 (202)
285 1k1a_A B-cell lymphoma 3-encod 48.2 1.3E+02 0.0045 26.2 10.8 55 195-249 13-69 (241)
286 3jxi_A Vanilloid receptor-rela 46.6 35 0.0012 30.8 6.5 86 48-134 12-116 (260)
287 2nsz_A Programmed cell death p 46.4 94 0.0032 24.7 8.1 65 328-392 10-79 (129)
288 3eiq_C Programmed cell death p 45.8 90 0.0031 30.0 9.2 64 227-291 221-289 (358)
289 3bqo_A Telomeric repeat-bindin 44.9 1.1E+02 0.0036 26.4 8.2 60 443-502 94-160 (211)
290 4gq2_M Nucleoporin NUP120; bet 44.5 2.3E+02 0.008 31.5 13.7 128 227-370 814-950 (950)
291 3esl_A Checkpoint serine/threo 42.0 1.7E+02 0.0059 25.3 9.7 52 306-357 95-147 (202)
292 2pk8_A Uncharacterized protein 41.1 47 0.0016 24.3 4.7 29 550-578 13-41 (103)
293 3ygs_P Procaspase 9; apoptosis 40.4 35 0.0012 25.6 4.3 33 21-54 52-84 (97)
294 1bpo_A Protein (clathrin); cla 39.9 3E+02 0.01 27.5 12.0 129 317-455 353-484 (494)
295 2l0z_A Glycoprotein G2; zinc-b 37.7 9.3 0.00032 22.9 0.5 18 626-643 11-29 (42)
296 2ion_A PDCD4, programmed cell 37.7 86 0.003 25.8 6.7 64 328-391 12-80 (152)
297 3eu9_A Huntingtin-interacting 37.3 2E+02 0.0069 24.8 10.6 17 117-133 48-64 (240)
298 3hra_A Ankyrin repeat family p 36.6 1.8E+02 0.0061 24.5 9.3 120 199-324 47-172 (201)
299 2d2s_A Exocyst complex compone 36.3 1E+02 0.0036 27.5 7.6 30 424-453 88-117 (235)
300 3kea_A K1L; tropism, ANK repea 35.9 1.1E+02 0.0039 27.9 8.3 12 120-131 71-82 (285)
301 3kea_A K1L; tropism, ANK repea 35.3 1.3E+02 0.0044 27.6 8.6 90 434-527 133-222 (285)
302 1oyz_A Hypothetical protein YI 35.1 2.5E+02 0.0086 25.3 17.9 242 1-302 32-279 (280)
303 2d2s_A Exocyst complex compone 33.6 1.7E+02 0.0058 26.1 8.5 22 260-281 24-45 (235)
304 1k1a_A B-cell lymphoma 3-encod 32.9 2.4E+02 0.0083 24.4 11.3 21 50-70 18-38 (241)
305 2nsz_A Programmed cell death p 32.3 1.9E+02 0.0064 22.9 9.9 63 226-289 10-77 (129)
306 2ion_A PDCD4, programmed cell 32.2 1.2E+02 0.0041 24.9 6.8 22 259-280 14-35 (152)
307 2zu6_B Programmed cell death p 31.7 3.2E+02 0.011 25.5 12.1 183 145-342 7-254 (307)
308 3d9h_A CDNA FLJ77766, highly s 31.4 1.5E+02 0.005 27.2 8.2 24 6-29 12-35 (285)
309 3aji_A 26S proteasome non-ATPa 30.7 1.6E+02 0.0056 25.4 8.2 19 13-31 10-28 (231)
310 2rfa_A Transient receptor pote 30.6 1.6E+02 0.0056 25.5 8.2 28 194-221 157-184 (232)
311 4b4t_S RPN3, 26S proteasome re 30.4 90 0.0031 31.7 6.7 63 391-453 231-296 (523)
312 3ljn_A Hypothetical protein; a 29.2 2.7E+02 0.0092 26.3 10.1 90 12-106 23-114 (364)
313 3ygs_P Procaspase 9; apoptosis 28.8 83 0.0028 23.5 4.8 38 339-376 51-88 (97)
314 3twr_A Tankyrase-2; ankyrin re 28.3 2.3E+02 0.0079 22.7 8.5 86 12-106 11-101 (165)
315 3b7b_A Euchromatic histone-lys 27.8 2.5E+02 0.0087 24.2 9.0 17 301-317 218-234 (237)
316 4g8k_A 2-5A-dependent ribonucl 27.8 3.7E+02 0.013 24.9 16.3 41 208-248 219-261 (337)
317 4b4t_S RPN3, 26S proteasome re 26.4 1.3E+02 0.0046 30.5 7.1 59 461-521 233-298 (523)
318 3ltj_A Alpharep-4; protein eng 26.2 2.9E+02 0.01 23.2 20.2 76 225-305 92-167 (201)
319 4a1g_A Mitotic checkpoint seri 26.1 2.7E+02 0.0093 22.8 9.5 47 478-524 84-132 (152)
320 3twe_A Alpha4H; unknown functi 26.1 74 0.0025 16.3 2.6 17 552-568 3-19 (27)
321 4a1g_A Mitotic checkpoint seri 25.9 2.7E+02 0.0094 22.8 8.7 50 273-323 84-134 (152)
322 2pnn_A Transient receptor pote 25.9 2.6E+02 0.009 25.0 8.9 96 37-134 10-124 (273)
323 2etb_A Transient receptor pote 25.8 1.4E+02 0.0047 26.6 6.9 86 47-134 8-113 (256)
324 2ko4_A Mediator of RNA polymer 25.1 1.2E+02 0.004 21.5 4.4 41 128-168 23-63 (81)
325 3aji_A 26S proteasome non-ATPa 25.0 3.3E+02 0.011 23.4 9.9 19 230-248 176-194 (231)
326 3eiq_C Programmed cell death p 24.7 4.7E+02 0.016 25.0 16.2 78 359-438 220-299 (358)
327 2fe3_A Peroxide operon regulat 23.9 1.5E+02 0.005 24.0 5.9 60 64-124 13-72 (145)
328 2k0q_A Putative uncharacterize 23.5 21 0.00072 24.5 0.4 23 620-642 8-30 (74)
329 2lo3_A SAGA-associated factor 23.4 21 0.00071 21.6 0.4 12 600-611 16-27 (44)
330 2ko4_A Mediator of RNA polymer 23.3 1.3E+02 0.0046 21.3 4.4 39 26-64 23-62 (81)
331 3mv2_A Coatomer subunit alpha; 23.2 4.7E+02 0.016 24.5 10.8 49 255-319 208-256 (325)
332 2wvi_A Mitotic checkpoint seri 22.7 3.3E+02 0.011 22.6 9.1 47 478-524 79-127 (164)
333 4gq2_M Nucleoporin NUP120; bet 22.5 5E+02 0.017 28.9 11.6 126 114-268 816-950 (950)
334 3bu8_A Telomeric repeat-bindin 22.2 2.7E+02 0.0092 24.3 7.1 69 407-475 88-163 (235)
335 1bd8_A P19INK4D CDK4/6 inhibit 21.6 3E+02 0.01 21.7 8.2 141 11-164 4-153 (156)
336 1bd8_A P19INK4D CDK4/6 inhibit 21.3 1.2E+02 0.004 24.3 5.0 11 236-246 111-121 (156)
337 2fu4_A Ferric uptake regulatio 21.3 2E+02 0.0068 20.2 5.6 60 63-123 7-67 (83)
338 1ug3_A EIF4GI, eukaryotic prot 21.1 4.2E+02 0.014 25.0 9.4 55 227-281 15-73 (339)
339 2p1h_A APAF-1, apoptotic prote 21.0 2.5E+02 0.0084 20.5 6.8 38 338-375 49-86 (94)
340 3ljn_A Hypothetical protein; a 20.9 3.5E+02 0.012 25.5 9.1 57 333-390 58-115 (364)
341 2p1h_A APAF-1, apoptotic prote 20.6 1E+02 0.0035 22.7 3.9 31 21-52 51-81 (94)
342 2r9g_A AAA ATPase, central reg 20.5 4.1E+02 0.014 22.9 10.2 45 361-406 16-63 (204)
343 1oai_A Nuclear RNA export fact 20.3 71 0.0024 21.3 2.6 25 267-291 33-57 (59)
344 1wgl_A TOLL-interacting protei 20.1 1.2E+02 0.0041 20.2 3.6 48 479-527 10-57 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-42 Score=374.15 Aligned_cols=482 Identities=10% Similarity=-0.012 Sum_probs=398.0
Q ss_pred HHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 006457 16 VDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQA 95 (644)
Q Consensus 16 ~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 95 (644)
+.+.|.+..+...|+.++.+ ++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLS-REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------C-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHH-HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 45567778888888888877 899999999999999999999999999986 467889999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-----------------CCCeecHHHHHHHHHhCCChh
Q 006457 96 HQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-----------------IRNIVSWTSMLTGYVQNDNAR 158 (644)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~ 158 (644)
++.+... +++..+++.++.+|.++|++++|.++|+++... ..+..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988653 678999999999999999999999999964431 114789999999999999999
Q ss_pred HHHHHHHHhHhhhhccCCCCCCCCCccCCHh-hHHHHHHHhhcCCCchH--HHHH-HHHHHHhCCCCCccHHHHHHHHHH
Q 006457 159 EALLLFKEFLLEESECGGASENSDNVFVDSV-AIASVLSACSRVTVNGV--TEGA-HGFVIKRGFDSEVGVGNTLIDAYA 234 (644)
Q Consensus 159 ~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~ 234 (644)
+|+++|++|.. ..|+.. .+..+...+...+..+. +..+ +..+...+..+...+++.++.+|.
T Consensus 218 ~A~~~~~~~~~--------------~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 218 RAKECYKEALM--------------VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHHHHHHHH--------------HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHHH--------------hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 99999999972 234433 33334333332222111 1111 333333344445566777899999
Q ss_pred hcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHH
Q 006457 235 RGGHVDVSRKVFDGMIE--KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCI 312 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i 312 (644)
+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++. ..+ +.+..++..++.++.+.|++++|..+
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL-EID-PYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999977 799999999999999999999999999998 333 44778899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 313 HDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QG 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 99999765 66788999999999999999999999998763 467899999999999999999999999999864 45
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-------KVKAD--FV 460 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~ 460 (644)
+..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 7889999999999999999999999999763 3446889999999999999999999999987 44777 78
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+|..++.+|...|++++|...++++++++|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-40 Score=359.25 Aligned_cols=484 Identities=10% Similarity=-0.006 Sum_probs=413.5
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHhhcCC-CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 2 KLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVD-KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
+.++...|+.++..|.+.|++++|..+|+++.. .|+..+|+.++.+|.+.|++++|+.+|+++.. .+++..+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 346778899999999999999999999999863 35878999999999999999999999999875 367889999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCC-CeecH
Q 006457 81 KSCSALHDLHSGKQAHQQAFIF---------------GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIR-NIVSW 144 (644)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 144 (644)
.++.+.|++++|.++++.+... |.+++..+|+.++.+|.+.|++++|.++|+++....| +...|
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 2234578999999999999999999999999976433 45556
Q ss_pred HHHHHHHHhCCChhHHHHH---HHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 006457 145 TSMLTGYVQNDNAREALLL---FKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDS 221 (644)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~---~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 221 (644)
..+...+...+..+.+... +..+. ..+..++..+|..++..+.+.|+++.|.++++.+.+. ++
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYS------------KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHH------------GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccc------------cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 6666555544433322211 44444 4455556667777888899999999999999988765 57
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHH
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLL 298 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 298 (644)
+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++. . ..+.+..++..+..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV-D-RHPEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-H-HCTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-h-hCcccHHHHHHHHH
Confidence 89999999999999999999999999983 3478899999999999999999999999997 3 23557889999999
Q ss_pred HHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHH
Q 006457 299 AIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 299 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 375 (644)
.+.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998865 45688999999999999999999999998763 4788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 376 LDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEPG--VEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+++|++|.+.. +.+..+|..+...+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.++|
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999864 4578999999999999999999999999996532 66787 789999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh
Q 006457 451 EGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 451 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (644)
+++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 987 3334 788999999999999999999999999999999999999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.3e-28 Score=254.16 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc---------cHHHHHHHHHHHHHhCCCCch
Q 006457 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG---------VLRLGKCIHDQVIKMDLEESV 325 (644)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~~~~~~~ 325 (644)
..++.+|.+|++.|++++|+++|++|. ..|+.||.+||+++|.+|++.+ .++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346667777777777777777777776 6677777777777777776543 356777777777777777777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
.+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777777777777777777777777775 3677777777777777777777777777777777777777777777777
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR 439 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 439 (644)
++.|++++|.++|++|.. .+..|+..||+.++..+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 777777777777777744 4777777777777776654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.6e-25 Score=229.55 Aligned_cols=374 Identities=12% Similarity=0.077 Sum_probs=264.8
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChh
Q 006457 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAR 158 (644)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~ 158 (644)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566788888888887777764 334556666677777788888888777765543 346667888888888888888
Q ss_pred HHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCC
Q 006457 159 EALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGH 238 (644)
Q Consensus 159 ~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 238 (644)
+|+..|+++.. +.|+ +...+..+..+|.+.|+
T Consensus 85 ~A~~~~~~al~--------------~~p~----------------------------------~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 85 EAIEHYRHALR--------------LKPD----------------------------------FIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHHHH--------------HCTT----------------------------------CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH--------------cCcc----------------------------------hHHHHHHHHHHHHHcCC
Confidence 88888887651 1222 22344555555555555
Q ss_pred HHHHHHHHhcCCC--C-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 239 VDVSRKVFDGMIE--K-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 239 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
+++|.+.|+++.. | +...+..+...+...|++++|++.|+++.+. .+.+..++..+...+...|++++|...++.
T Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554421 2 3344555555555566666666666665511 122345555566666666666666666666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006457 316 VIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 392 (644)
+++.. +.+...+..+...+...|++++|...|++... .+..+|..+...|...|++++|++.|+++.+.+ +.+..
T Consensus 195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T 1w3b_A 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 66544 33455667777788888888888888876642 356788888888999999999999999988853 33567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
++..+..++.+.|++++|...|+.+.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..+|..+...+.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 7888888899999999999999988663 3456788889999999999999999999886 3444 4678899999999
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
..|++++|...++++++++|+++..+..++.++...|+
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999988877663
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.8e-27 Score=248.62 Aligned_cols=201 Identities=12% Similarity=0.038 Sum_probs=171.1
Q ss_pred CCCccCCH-hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHH
Q 006457 181 SDNVFVDS-VAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNS 259 (644)
Q Consensus 181 ~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 259 (644)
..++.+.+ ..++.+|.+|++.|++++|.++++.|.+.|+.||..+||+||.+|++.+...++
T Consensus 18 ~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------------- 80 (501)
T 4g26_A 18 KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------------- 80 (501)
T ss_dssp ------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----------------
T ss_pred HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----------------
Confidence 55554433 356777888888888888888888888888888888888888888777653321
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 339 (644)
.+.+..++|.++|++|. ..|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++||.+|++.|
T Consensus 81 -----~~~~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 81 -----SPNPGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp -----SCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred -----hhcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 12345688999999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 340 QVDLARKAFNQMK----EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 340 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999997 4899999999999999999999999999999999999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.6e-24 Score=220.59 Aligned_cols=352 Identities=12% Similarity=0.074 Sum_probs=304.7
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCC-HhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccH
Q 006457 147 MLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVD-SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGV 225 (644)
Q Consensus 147 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 225 (644)
+...+.+.|++++|++.+.++.. ..|+ ...+..+...+...|+++.+...+...++.. +.+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~--------------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~ 69 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR--------------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHH
Confidence 34567789999999999998762 2454 4455556667788999999999999888764 567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHH
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN-AVTLSAVLLAIA 301 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~ 301 (644)
+..+...|.+.|++++|...|+++. ..+..+|..+..++.+.|++++|++.|+++. . ..|+ ...+..+...+.
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~--~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL-Q--YNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-H--HCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999883 3356789999999999999999999999998 3 2454 445667778888
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDL 378 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 378 (644)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ | +...|..+...+...|++++|+..
T Consensus 147 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999875 45678899999999999999999999998863 3 567899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-C
Q 006457 379 FYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-V 455 (644)
Q Consensus 379 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~ 455 (644)
|++..... +.+..++..+..++...|++++|...|+.+.+ ..| +...|..+...|.+.|++++|.+.|+++ . .
T Consensus 226 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99998853 33578899999999999999999999999965 344 5788999999999999999999999987 2 3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 456 KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+++..+|..+...+...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999999999999999999999999999999985
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.7e-23 Score=218.85 Aligned_cols=441 Identities=12% Similarity=-0.014 Sum_probs=247.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 006457 41 WNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSK 120 (644)
Q Consensus 41 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 120 (644)
|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|+++.|.+.++.+++.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555533 455555555555555555555555555555543 2334455555555555
Q ss_pred CCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhcc-------CCCCCCCCCccCCHhhHH
Q 006457 121 CGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESEC-------GGASENSDNVFVDSVAIA 192 (644)
Q Consensus 121 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------~~~~~~~~~~~p~~~t~~ 192 (644)
.|++++|...|+++... +++......++..+........+.+.+..+....... ...........|+.....
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 66666666555554433 1222333333333322222222222221111000000 000000111222222222
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-
Q 006457 193 SVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR---GGHVDVSRKVFDGMIE----------------K- 252 (644)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~- 252 (644)
..+..+........ ..-+.+...+..+...+.. .|++++|...|+++.. +
T Consensus 166 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 166 SFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp HHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred HHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 22211111111000 0001112333333333333 6777777777766533 1
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 332 (644)
+..+|..+...+...|++++|+..|+++. .. .|+..++..+...+...|+++.|...++.+.+.. +.+..++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAI-EL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHH-HH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 34566777777777888888888887776 22 2336666777777777777777777777777654 34556677777
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
..|...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 777788888888877776542 355677777777778888888888888777652 3345667777777777888888
Q ss_pred HHHHHHHHhhhcCCCCC----hhHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 006457 410 GWHWLNTMGHEFNIEPG----VEHYGCMVDLLGR---AGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
|...++.+.....-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 88887777543222222 3377777777777 78888888777765 2223 45677777777788888888888
Q ss_pred HHHHhhccCCCCchhHHHH
Q 006457 481 AAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l 499 (644)
.++++++++|+++..+..+
T Consensus 471 ~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 8888888887776655544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-22 Score=216.57 Aligned_cols=428 Identities=9% Similarity=-0.061 Sum_probs=318.4
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHh
Q 006457 75 TFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQ 153 (644)
Q Consensus 75 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~ 153 (644)
.+......+...|++++|...+..+++.. |+...+..+..+|.+.|++++|...|+++... +.+..+|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45556677888999999999999999976 68999999999999999999999999987665 3466789999999999
Q ss_pred CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHH---H
Q 006457 154 NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTL---I 230 (644)
Q Consensus 154 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i 230 (644)
.|++++|+..|+++. ..+ +++......++..+........+.+.+..+...+..|+....... .
T Consensus 86 ~g~~~~A~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 86 LGKFADAMFDLSVLS------------LNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp TTCHHHHHHHHHHHH------------HSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HhhHHHHHHHHHHHH------------hcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 999999999999987 222 234444444444333322222222222211111111111100000 0
Q ss_pred HHHHhcCCHHHHHHHHhcCC---------CC-CHhHHHHHHHHHHH---CCChhHHHHHHHHhHHc----CC-C------
Q 006457 231 DAYARGGHVDVSRKVFDGMI---------EK-DAVTWNSIIAIYAQ---NGLAAEALDVFDQMVKS----TD-V------ 286 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~----~~-~------ 286 (644)
...........+...+.... .+ +...+......+.. .|++++|+..|+++.+. .. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 01111111222222222221 12 24555555555554 89999999999999830 21 1
Q ss_pred -CCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHH
Q 006457 287 -KCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAM 362 (644)
Q Consensus 287 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 362 (644)
+.+..++..+...+...|+++.|...++.+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 310 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH
Confidence 223457778888899999999999999999987644 88889999999999999999999998764 366789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 006457 363 IAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK 442 (644)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (644)
...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|+
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999863 335678888999999999999999999999663 23357889999999999999
Q ss_pred HHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 443 LKEAYDLIEGM----KVKAD----FVVWGSLLGACRI---HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 443 ~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
+++|.+.++++ +..|+ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|...|++++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 99999999877 22222 4488999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 006457 512 VERTRSLMKNR 522 (644)
Q Consensus 512 a~~~~~~m~~~ 522 (644)
|.+.+++..+.
T Consensus 468 A~~~~~~a~~~ 478 (514)
T 2gw1_A 468 AITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.7e-21 Score=199.82 Aligned_cols=323 Identities=11% Similarity=0.030 Sum_probs=273.4
Q ss_pred CCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHH
Q 006457 186 VDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIA 262 (644)
Q Consensus 186 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 262 (644)
.+...+..+...+...|+++.|..++..+++.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356677888888999999999999999998764 5578899999999999999999999999883 346889999999
Q ss_pred HHHHCCChhHHHHHHHHhHHcCCCCCCh----hhHHHH------------HHHHHccccHHHHHHHHHHHHHhCCCCchh
Q 006457 263 IYAQNGLAAEALDVFDQMVKSTDVKCNA----VTLSAV------------LLAIAHLGVLRLGKCIHDQVIKMDLEESVI 326 (644)
Q Consensus 263 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~l------------l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~ 326 (644)
.|.+.|++++|++.|+++. . ..|+. ..+..+ ...+...|+++.|...++.+.+.. +.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVL-K--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHH-T--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHH-h--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999998 3 34543 444444 344888999999999999999875 56788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH-----
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSV----- 397 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l----- 397 (644)
++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 899999999999999999999998863 47889999999999999999999999999975 444 3444433
Q ss_pred -------HHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 006457 398 -------LSACSHAGLVQEGWHWLNTMGHEFNIEPG-----VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWG 463 (644)
Q Consensus 398 -------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 463 (644)
..+|.+.|++++|..+|+.+... .|+ ..+|..++.++.+.|++++|.+.++++ ...| +..+|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999999663 454 458899999999999999999999986 3344 678999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH------------HHHhhcC-----CchHHHHHHHH
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS------------NIYANAG-----RWEDVERTRSL 518 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 518 (644)
.+..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 4466666 45566666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.6e-21 Score=207.37 Aligned_cols=427 Identities=10% Similarity=0.040 Sum_probs=271.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006457 38 VFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDM 117 (644)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 117 (644)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999998854 2366778888888999999999999999999876 4467788889999
Q ss_pred HHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHH
Q 006457 118 YSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSA 197 (644)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~ 197 (644)
|...|++++|...|+.+... | ...+..+..+...+....|+..++++....+. ......|+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~------~~~~~~~~~--------- 164 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN-G--DFDGASIEPMLERNLNKQAMKVLNENLSKDEG------RGSQVLPSN--------- 164 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------------CCCCCH---------
T ss_pred HHHcCCHHHHHHHHHHHhcC-C--CCChHHHHHHHHHHHHHHHHHHHHHHHHhCcc------ccccccchH---------
Confidence 99999999999999755432 2 22233344555566667888888887521000 011122222
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh---HHHHHHHHHHH--------
Q 006457 198 CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAV---TWNSIIAIYAQ-------- 266 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~-------- 266 (644)
..+..|....+.+.+...+......+.. .+..+...+..
T Consensus 165 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 165 ------------------------------TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp ------------------------------HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred ------------------------------hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2233344444555555555444333222 22222222211
Q ss_pred CCChhHHHHHHHHhHHcCCCCCC--------hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006457 267 NGLAAEALDVFDQMVKSTDVKCN--------AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC 338 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~~p~--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (644)
.|++++|+.+|+++. . ..|+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...|...
T Consensus 215 ~~~~~~A~~~~~~~l-~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLL-S--ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHH-C----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHH-H--HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHh
Confidence 135666666666665 2 2233 1234444455566666677777777766654 3355666666777777
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006457 339 GQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLN 415 (644)
Q Consensus 339 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 415 (644)
|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777766542 345667777777777777777777777777643 2245566667777777777777777777
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CChhH
Q 006457 416 TMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KVKA----DFVVWGSLLGACRIH----------KNVDL 477 (644)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~~~----------g~~~~ 477 (644)
.+.+. .+.+...+..+...|.+.|++++|.+.|+++ +..+ ....+..+...+... |++++
T Consensus 369 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 369 ETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 77552 2334566777777777777777777777765 1111 122233444555566 78888
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888777653
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1e-20 Score=197.89 Aligned_cols=350 Identities=13% Similarity=0.069 Sum_probs=226.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCcc
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVF 185 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 185 (644)
+...+..+...|.+.|++++|..+|+++... +.+..+|..+...|...|++++|+..|+++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 87 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI----------------- 87 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------
Confidence 3445555555555566666666555554432 2345555555555555555555555555544
Q ss_pred CCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CH---hHHHH
Q 006457 186 VDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK---DA---VTWNS 259 (644)
Q Consensus 186 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~ 259 (644)
+.+ +.+..++..+..+|.+.|++++|.+.|+++... +. .+|..
T Consensus 88 ------------------------------~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 88 ------------------------------QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp ------------------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ------------------------------hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 332 234556666677777777777777777766332 22 44444
Q ss_pred HH------------HHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 260 II------------AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 260 li------------~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
++ ..+...|++++|+..|+++.+. .+.+..++..+...+...|++++|...+..+.+.. +.+..+
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 43 3377777888888888777621 23456667777777777788888888777777654 445677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAM------------IAGYGMHCRAREALDLFYKMIKAGVRPN-- 390 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 390 (644)
+..+...|.+.|++++|...|+++.. | +...+..+ ...|...|++++|+..|+++.+. .|+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 77788888888888888888877653 3 33344444 77788888888888888888874 344
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 006457 391 ---YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSL 465 (644)
Q Consensus 391 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 465 (644)
...+..+..++.+.|++++|...++.+... .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+..+
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 346777788888888888888888887552 2335788888888888888888888888876 45554 4455555
Q ss_pred HHH------------HHhcC-----ChhHHHHHHHH-hhccCCCCch----------hHHHHHHHHhhcCCchH
Q 006457 466 LGA------------CRIHK-----NVDLGEIAAKK-LFELEPNNCG----------YHVLLSNIYANAGRWED 511 (644)
Q Consensus 466 l~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 511 (644)
..+ |...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 422 33333 56778888886 6777776432 34445555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=4.3e-20 Score=197.79 Aligned_cols=442 Identities=9% Similarity=0.008 Sum_probs=319.6
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHhhcCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLFNKYVD--KNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSC 83 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 83 (644)
...+..+...+.+.|++++|...|+++.. +.++.+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 46788899999999999999999998753 2377899999999999999999999999999865 23567788888999
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----CCCeecHHHHHHHHHhCCChhH
Q 006457 84 SALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----IRNIVSWTSMLTGYVQNDNARE 159 (644)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 159 (644)
...|++++|...++ .+.. .|+. .+..+..+...+....|...++.+... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 3322 2322 222344555566678899988887664 1223344555666777777777
Q ss_pred HHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH
Q 006457 160 ALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV 239 (644)
Q Consensus 160 A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 239 (644)
++..+.... ...+....+...+....... .-......|++
T Consensus 179 ~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~a~~~~ 218 (537)
T 3fp2_A 179 EVSSVNTSS--------------NYDTAYALLSDALQRLYSAT--------------------------DEGYLVANDLL 218 (537)
T ss_dssp HHHTSCCCC--------------SSCSSHHHHHHHHHHHHTCS--------------------------HHHHHHHHHHH
T ss_pred HHHHHhhcc--------------ccccHHHHHHHHHHHHHHhh--------------------------hhhhHHHHHHH
Confidence 665554421 12222222221111111000 00111123467
Q ss_pred HHHHHHHhcCCCC---C-------HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 240 DVSRKVFDGMIEK---D-------AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 240 ~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
++|..+|+++.+. + ..+|..+...+...|++++|+..|++.. . ..|+..++..+...+...|+++.|
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI-N--LHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--HCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-h--cCCCchHHHHHHHHHHHhcCHHHH
Confidence 7777777776332 2 2356667778889999999999999988 3 356677888888888999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+..
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998875 45677888999999999999999999998763 356789999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC----ChhHHHHHHHHHhhc----------CCHHHHHHHHHh
Q 006457 387 VRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP----GVEHYGCMVDLLGRA----------GKLKEAYDLIEG 452 (644)
Q Consensus 387 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~ 452 (644)
+.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...|++
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 44567888889999999999999999999865321111 223345556777787 999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 453 M-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 453 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
+ ...| +..+|..+...+...|++++|...+++++++.|+++.....
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 7 2333 57789999999999999999999999999999987665443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1e-17 Score=168.91 Aligned_cols=302 Identities=9% Similarity=-0.021 Sum_probs=190.0
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHH
Q 006457 189 VAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYA 265 (644)
Q Consensus 189 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 265 (644)
..+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344445555556666666666666665543 3344555566666666666666666665552 124455666666666
Q ss_pred HCCChhHHHHHHHHhHHcCCCCC---C-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 006457 266 QNGLAAEALDVFDQMVKSTDVKC---N-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV 341 (644)
Q Consensus 266 ~~g~~~~A~~~~~~m~~~~~~~p---~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 341 (644)
..|++++|+..|++.. ...| + ...+..+... .. ...+..+...+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHH---hcCCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 6666666666666655 2233 1 1111111000 00 00111234566777777
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 006457 342 DLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG 418 (644)
Q Consensus 342 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 418 (644)
++|.+.|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777776542 355667777777777777777777777777642 3456677777777777777777777777775
Q ss_pred hhcCCCCC-hhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHH
Q 006457 419 HEFNIEPG-VEHYG------------CMVDLLGRAGKLKEAYDLIEGM-KVKAD-F----VVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 419 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~ 479 (644)
+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 42 232 22222 2366688888888888888876 22333 2 23445667888888999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 480 IAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..++++++.+|+++..+..++.+|...|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998888888888888899999999999999988888875
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.8e-17 Score=167.18 Aligned_cols=289 Identities=10% Similarity=0.017 Sum_probs=207.7
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CHhHHHHH
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEK------DAVTWNSI 260 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l 260 (644)
+..++..+...+...|+++.|...+..+++.. +.+...+..+...|.+.|++++|...|+++... +...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 46677788888999999999999999998874 446788999999999999999999999998443 23344433
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ 340 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 340 (644)
...+. ...+......+...|+++.|...+..+.+.. +.+..++..+...|...|+
T Consensus 115 ~~~~~------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 115 VKADE------------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 21100 0011223334445555555555555555543 3345566667777777777
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHccC
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFV------------SVLSACSHAG 405 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------------~ll~a~~~~g 405 (644)
+++|...|++..+ .+...|..+...|...|++++|...|++..+.. +.+...+. .+...+...|
T Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7777777776553 355677777777888888888888888877642 22222222 2356688899
Q ss_pred CHHHHHHHHHHHhhhcCCCCC-h----hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 406 LVQEGWHWLNTMGHEFNIEPG-V----EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
++++|...++.+... .|+ . ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|
T Consensus 249 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 249 RYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999988663 233 2 33556788999999999999999877 3344 677999999999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (644)
...++++++++|+++..+..+..++..
T Consensus 326 ~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 326 IQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999999999998888888776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.3e-17 Score=162.41 Aligned_cols=287 Identities=11% Similarity=0.039 Sum_probs=218.8
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHH
Q 006457 219 FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSA 295 (644)
Q Consensus 219 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 295 (644)
.+.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+..++++.+. .+.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 345666677777777788888888888877632 24556666777778888888888888887622 2334566777
Q ss_pred HHHHHHccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC
Q 006457 296 VLLAIAHLG-VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 296 ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 371 (644)
+...+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 777777777 7888888888877654 34566777888888888888888888887653 345677778888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC-------CCCChhHHHHHHHHHhhcCCHH
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN-------IEPGVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~ 444 (644)
+++|++.|++..+.. +.+...+..+...+...|++++|...++.+..... .+.....+..+...|.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999888753 44567888888888899999999999888865321 1334678889999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH-hhcCCc
Q 006457 445 EAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY-ANAGRW 509 (644)
Q Consensus 445 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 509 (644)
+|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999876 2223 5678888999999999999999999999999999999999999888 455554
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=9e-18 Score=167.03 Aligned_cols=344 Identities=13% Similarity=0.080 Sum_probs=160.8
Q ss_pred hCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh
Q 006457 120 KCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS 199 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~ 199 (644)
+.|++++|.++++++.. | .+|+.|+.++.+.|++++|++.|.+. +|..+|..++.++.
T Consensus 15 ~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika------------------~D~~~y~~V~~~ae 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA------------------DDPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC------------------CCHHHHHHHHHHHH
Confidence 67889999999999965 5 48999999999999999999999652 57789999999999
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQ 279 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (644)
..|++++|...+...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..
T Consensus 73 ~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp --------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988877764 45678899999999999999999988864 6778999999999999999999999997
Q ss_pred hHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhH
Q 006457 280 MVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSW 359 (644)
Q Consensus 280 m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 359 (644)
+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+..-.
T Consensus 148 a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l 210 (449)
T 1b89_A 148 V----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL 210 (449)
T ss_dssp T----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHH
T ss_pred h----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhH
Confidence 7 26899999999999999999999887 378899999999999999999987776654 444445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHhhhcCCCC------ChhHHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH--AGLVQEGWHWLNTMGHEFNIEP------GVEHYG 431 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~ 431 (644)
..++..|.+.|++++|+.+++...... +--...|+-+.-++++ .+++.+.++.|. ...+++| +..+|.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHH
Confidence 568899999999999999999987543 3334455555555554 445555555544 3346666 577899
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 432 CMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
-++-.|..-++++.|...+-+-+ |+..--..+.....+-.+.+.--++..-.++..|. ....|..++...=+.+.
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHH
Confidence 99999999999999988765542 23233333344444555555444443333333332 33333334433333333
Q ss_pred HHHHH
Q 006457 512 VERTR 516 (644)
Q Consensus 512 a~~~~ 516 (644)
+.+++
T Consensus 362 ~v~~~ 366 (449)
T 1b89_A 362 AVNYF 366 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=6.6e-17 Score=160.87 Aligned_cols=345 Identities=11% Similarity=0.096 Sum_probs=130.9
Q ss_pred HhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 006457 17 DKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAH 96 (644)
Q Consensus 17 ~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 96 (644)
-+.|++++|.+.+++++.+ .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~---~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP---AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4678899999999999654 4899999999999999999999975 357889999999999999999999988
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCC
Q 006457 97 QQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGG 176 (644)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 176 (644)
...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+.
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~-------- 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------- 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHTT--------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh--------
Confidence 887774 45678899999999999999999988853 777899999999999999999999998752
Q ss_pred CCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhH
Q 006457 177 ASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVT 256 (644)
Q Consensus 177 ~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 256 (644)
.|..|++.+.+.|++++|.+.+.++ .++.+
T Consensus 150 ------------------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~ 179 (449)
T 1b89_A 150 ------------------------------------------------NFGRLASTLVHLGEYQAAVDGARKA--NSTRT 179 (449)
T ss_dssp ------------------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHH
T ss_pred ------------------------------------------------hHHHHHHHHHHhccHHHHHHHHHHc--CCchh
Confidence 3555666666666666666666666 25666
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 257 WNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
|..++.+|...|+++.|......+ .+.|+. ...++..|.+.|.++++..+++...... +-....|+-|.-+|+
T Consensus 180 Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 180 WKEVCFACVDGKEFRLAQMCGLHI----VVHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTTTT----TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH----HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 666666666666666664433221 122222 3345556666666666666666655443 344555555555555
Q ss_pred h--cCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccC
Q 006457 337 K--CGQVDLARKAFNQMKE--------KNVRSWTAMIAGYGMHCRAREALDLFYKMIKA-GVRPNYITFVSVLSACSHAG 405 (644)
Q Consensus 337 ~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g 405 (644)
+ .+++.+..+.|..-.. .+...|..+...|...++++.|... |.+. ...-+...|.-++.--....
T Consensus 253 ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 253 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp TTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTH
T ss_pred hcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHH
Confidence 4 3455566666553321 2456788888888888888887763 4442 11123344433332222222
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 406 LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
-+-+|..++- . -.| ...+-|+.++...=+...+.++|++.
T Consensus 330 lyYkai~fyl---~---~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 330 LYYRAIQFYL---E---FKP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHHHH---H---HCG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHHH---h---cCH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 2223333222 1 122 23455555555555555555555555
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.8e-15 Score=161.37 Aligned_cols=395 Identities=10% Similarity=0.026 Sum_probs=250.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCcc
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVF 185 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 185 (644)
+...|..++. +.+.|++++|..+|+++... +.+...|..++..+.+.|++++|..+|++.. . ..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral------------~--~~ 76 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL------------M--KV 76 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT------------T--TC
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------h--cC
Confidence 4445555554 24455555555555555444 2234445555555555555555555555543 1 12
Q ss_pred CCHhhHHHHHHH-hhcCCCchHHHH----HHHHHHHh-CCCC-CccHHHHHHHHHHh---------cCCHHHHHHHHhcC
Q 006457 186 VDSVAIASVLSA-CSRVTVNGVTEG----AHGFVIKR-GFDS-EVGVGNTLIDAYAR---------GGHVDVSRKVFDGM 249 (644)
Q Consensus 186 p~~~t~~~ll~~-~~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 249 (644)
|+...+...+.. ....|+.+.+.+ +++..++. |..| +..+|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 343333333321 122344444333 44444332 4433 34556666665544 57778888888776
Q ss_pred CC-CC---HhHHHHHHHHH-------------HHCCChhHHHHHHHHhHH-----cC---CCCCCh--------hhHHHH
Q 006457 250 IE-KD---AVTWNSIIAIY-------------AQNGLAAEALDVFDQMVK-----ST---DVKCNA--------VTLSAV 296 (644)
Q Consensus 250 ~~-~~---~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~~-----~~---~~~p~~--------~t~~~l 296 (644)
.. |+ ...|....... ...+++.+|..++..+.. .. .++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 43 21 12333222210 123456677776665210 11 134442 233333
Q ss_pred HHHHHc----cccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC-
Q 006457 297 LLAIAH----LGVL----RLGKCIHDQVIKMDLEESVIVGTSIIDMYCK-------CGQVD-------LARKAFNQMKE- 353 (644)
Q Consensus 297 l~a~~~----~~~~----~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~- 353 (644)
+..... .++. +.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 322221 1222 36677888888763 5567788888888876 69987 89999998764
Q ss_pred --C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-h
Q 006457 354 --K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-Y-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-V 427 (644)
Q Consensus 354 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 427 (644)
| +...|..++..+.+.|++++|..+|+++.+ ..|+ . ..|...+..+.+.|++++|..+|+...+ ..|. .
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~ 390 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRH 390 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCT
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCch
Confidence 3 567899999999999999999999999998 4564 2 4788888888899999999999999965 2333 3
Q ss_pred hHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch----hHHHHH
Q 006457 428 EHYGCMVDL-LGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG----YHVLLS 500 (644)
Q Consensus 428 ~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~ 500 (644)
..|...+.+ +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+++++++..|.++. .+...+
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 334333322 34689999999999976 3334 5789999999999999999999999999998776654 676777
Q ss_pred HHHhhcCCchHHHHHHHHHhhC
Q 006457 501 NIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
......|+.+.+.++.+++.+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788899999999999988753
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.7e-16 Score=158.08 Aligned_cols=264 Identities=10% Similarity=0.022 Sum_probs=227.4
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006457 252 KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSI 331 (644)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 331 (644)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 356677788889999999999999999997332 3445566677888899999999999999999875 4567788899
Q ss_pred HHHHHhcC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006457 332 IDMYCKCG-QVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLV 407 (644)
Q Consensus 332 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (644)
...|...| ++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 356789999999999999999999999999864 33456777788999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChh
Q 006457 408 QEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK-----------VKADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 408 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~ 476 (644)
++|...++.+.+ ..+.+...+..+...|.+.|++++|.+.++++- ...+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999955 233457889999999999999999999998761 1334678999999999999999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987764
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=7.3e-17 Score=163.56 Aligned_cols=281 Identities=8% Similarity=-0.051 Sum_probs=218.7
Q ss_pred HHhcCCHHHHHH-HHhcCCC---C----CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 233 YARGGHVDVSRK-VFDGMIE---K----DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 233 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
|.-.|++++|.. .|++... . +...|..+...+...|++++|+..|+++. .. .+.+..++..+...+...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~-~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQ-DPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HS-CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHCc
Confidence 344578888888 7776522 1 34567788888999999999999999887 32 2446677888888888999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHH---------------HHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTA---------------MIAGY 366 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~ 366 (644)
+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.. | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999888875 45677888889999999999999999987763 2 2222221 13334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
...|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999999864221 4788999999999999999999999998663 23357889999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC-----------chhHHHHHHHHhhcCCchHH
Q 006457 446 AYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN-----------CGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 446 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 512 (644)
|.+.|+++ ...| +..+|..+...+...|++++|...+++++++.|++ ...+..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999986 3334 57789999999999999999999999999998887 78999999999999999999
Q ss_pred HHHHHH
Q 006457 513 ERTRSL 518 (644)
Q Consensus 513 ~~~~~~ 518 (644)
..+++.
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 988763
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=2.1e-15 Score=159.26 Aligned_cols=352 Identities=9% Similarity=0.014 Sum_probs=240.2
Q ss_pred CCChHHHHHHHhhCCCCCCCeecHHHHHHHHHh----CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHH
Q 006457 121 CGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQ----NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLS 196 (644)
Q Consensus 121 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~ 196 (644)
.+++++|...|++..+. .+..++..|...|.. .+++++|+..|++.. ..+ +...+..+-.
T Consensus 56 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~------------~~~---~~~a~~~Lg~ 119 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA------------LKG---LPQAQQNLGV 119 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH------------HTT---CHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH------------HCC---CHHHHHHHHH
Confidence 44455555554443321 233444444444444 445555555555443 211 2223333333
Q ss_pred Hhhc----CCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHH-
Q 006457 197 ACSR----VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR----GGHVDVSRKVFDGMIE-KDAVTWNSIIAIYAQ- 266 (644)
Q Consensus 197 ~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 266 (644)
.+.. .++.+.|.+.+....+.| ++..+..|..+|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 120 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g 196 (490)
T 2xm6_A 120 MYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRG 196 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 3333 445555555555555543 44556666777766 6778888888877633 467777778777877
Q ss_pred ---CCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 006457 267 ---NGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK-- 337 (644)
Q Consensus 267 ---~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-- 337 (644)
.+++++|++.|++.. ..+ +...+..+...+.. .++.++|...++...+.+ +...+..|..+|..
T Consensus 197 ~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp SSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 788888888888876 433 45566666666654 678888888888887754 34566667777777
Q ss_pred --cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---C
Q 006457 338 --CGQVDLARKAFNQMKE-KNVRSWTAMIAGYGMH-----CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG---L 406 (644)
Q Consensus 338 --~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~ 406 (644)
.++.++|...|++..+ .+...+..+...|... ++.++|+.+|++..+.| +...+..+...+...| +
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 8899999999988765 3566777888888877 89999999999998865 3455666666666656 7
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLG 478 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a 478 (644)
+++|.++|++..+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...+.. .+|.++|
T Consensus 347 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 88999999998652 467788888888888 89999999999887333467788888888887 8999999
Q ss_pred HHHHHHhhccCCC---CchhHHHHHHHHhh
Q 006457 479 EIAAKKLFELEPN---NCGYHVLLSNIYAN 505 (644)
Q Consensus 479 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 505 (644)
...++++.+.+|+ ++.....|+.++..
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999854 66666666655443
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=1.8e-14 Score=159.39 Aligned_cols=382 Identities=11% Similarity=0.066 Sum_probs=294.3
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHH
Q 006457 72 TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFG--FHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLT 149 (644)
Q Consensus 72 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 149 (644)
|+.-....++++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+...+.+.... .+ ...+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHH
Confidence 44445677888999999999999999998432 113446667777777776 55666666665543 22 455778
Q ss_pred HHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHH
Q 006457 150 GYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTL 229 (644)
Q Consensus 150 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 229 (644)
.+...|.+++|..+|++.. -.......++. ..+++++|.++...+ .++.+|..+
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----------------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqL 1111 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----------------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQL 1111 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----------------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHH
Confidence 8889999999999999852 11122233332 567788887777643 357889999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 230 IDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
..++.+.|++++|.+.|.+. .|...|..++.++.+.|++++|++.|...+ ... +++...+.++.+|++.++++..
T Consensus 1112 AKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc--ccccccHHHHHHHHhhcCHHHH
Confidence 99999999999999999775 678888899999999999999999998876 333 4443444588999999988864
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP 389 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 389 (644)
..+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. .
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 4443 2 345566777999999999999999999986 48999999999999999999999976 3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLG 467 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 467 (644)
+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-|..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 668999999999999999999876543 3456777889999999999999999999765 44443 335655555
Q ss_pred HHHh--cCChhHHHHHHHHhhccCC-----CCchhHHHHHHHHhhcCCchHHHH
Q 006457 468 ACRI--HKNVDLGEIAAKKLFELEP-----NNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 468 ~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
++.+ -++..++.+.|..-..+.| .+...|.-+.-.|.+.|+|+.|..
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5554 4577788888887777766 667889999999999999999985
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.4e-15 Score=160.48 Aligned_cols=402 Identities=9% Similarity=0.008 Sum_probs=268.5
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHH
Q 006457 72 TRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGY 151 (644)
Q Consensus 72 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 151 (644)
|...|..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|..+|++.....|++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 45566666666666666542 34455666777777777777777777777666555666666655422
Q ss_pred -HhCCChhHHHH----HHHHhHhhhhccCCCCCCCCCccCC-HhhHHHHHHHhhc---------CCCchHHHHHHHHHHH
Q 006457 152 -VQNDNAREALL----LFKEFLLEESECGGASENSDNVFVD-SVAIASVLSACSR---------VTVNGVTEGAHGFVIK 216 (644)
Q Consensus 152 -~~~g~~~~A~~----~~~~m~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 216 (644)
...|+.+.|.+ +|++... ..|..|+ ...|...+..... .|+++.+..++..+++
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~-----------~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALD-----------KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHH-----------HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHccchhhHHHHHHHHHHHHHH-----------HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 34455555544 5555441 2243443 3344444443322 5778889999988877
Q ss_pred hCCCCCccHHHHHHHHH-------------HhcCCHHHHHHHHhc-------CC------CCC--------HhHHHHHHH
Q 006457 217 RGFDSEVGVGNTLIDAY-------------ARGGHVDVSRKVFDG-------MI------EKD--------AVTWNSIIA 262 (644)
Q Consensus 217 ~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~ 262 (644)
.........|....... .+.++++.|..++.. +. .|+ ...|...+.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 21111123333322211 134567777766654 11 122 356766665
Q ss_pred HHHHCC----Ch----hHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc-------cccHH-------HHHHHHHHHHHhC
Q 006457 263 IYAQNG----LA----AEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH-------LGVLR-------LGKCIHDQVIKMD 320 (644)
Q Consensus 263 ~~~~~g----~~----~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~i~~~~~~~~ 320 (644)
....++ +. .+|+.+|++.... .+-+...|......+.+ .|+++ .|..+++..++.-
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 443332 22 4778899988732 23456667777766664 68877 8999999988733
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006457 321 LEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NV-RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVS 396 (644)
Q Consensus 321 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 396 (644)
.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+.. +.+...+..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHH
Confidence 455788999999999999999999999998763 3 33 479999999999999999999999998752 222333333
Q ss_pred HHH-HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 006457 397 VLS-ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KVKAD--FVVWGSLLGAC 469 (644)
Q Consensus 397 ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~ 469 (644)
... .+...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+...
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 222 2346899999999999987642 235789999999999999999999999986 22332 44899999999
Q ss_pred HhcCChhHHHHHHHHhhccCCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
..+|+.+.+..+.+++.+..|+
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999999998885
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=2.1e-16 Score=160.13 Aligned_cols=261 Identities=8% Similarity=-0.077 Sum_probs=210.3
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 332 (644)
+...|..+...+.+.|++++|++.|+++.+. .+.+..++..+...+...|++++|...++.+++.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4556888888999999999999999988732 24467788888888999999999999999988875 45677888899
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKEKN-------------VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR-PNYITFVSVL 398 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 398 (644)
..|...|++++|...|+++.+.+ ...+..+...|...|++++|++.|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999998876421 123344578899999999999999999986422 1588899999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 476 (644)
..+...|++++|...|+.+.+. .+.+..+|..+..+|.+.|++++|.+.|+++ ...| +..+|..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999663 2346889999999999999999999999986 3344 5778999999999999999
Q ss_pred HHHHHHHHhhccCCC------------CchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 477 LGEIAAKKLFELEPN------------NCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
+|...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998876 367889999999999999998887654
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=3e-13 Score=149.77 Aligned_cols=279 Identities=12% Similarity=0.075 Sum_probs=146.6
Q ss_pred hCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhh
Q 006457 120 KCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACS 199 (644)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~ 199 (644)
..|++++|.++.+++. +..+|..+..++...|++++|++.|.+. -|...|..+..+|.
T Consensus 1088 ~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA------------------dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------DDPSSYMEVVQAAN 1145 (1630)
T ss_pred HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------------------CChHHHHHHHHHHH
Confidence 4455555555555442 3445556666666666666666666442 24455555666666
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHH
Q 006457 200 RVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQ 279 (644)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (644)
+.|+++.+.+.+....+.. +++.+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|..
T Consensus 1146 ~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1146 TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 6666666666665555433 33333334666666666665433332 233444555555666666666666666655
Q ss_pred hHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhH
Q 006457 280 MVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSW 359 (644)
Q Consensus 280 m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 359 (644)
. ..|..+...+.+.|+++.|.+.++.. .+..+|..+-.+|...|++..|...... ...+...+
T Consensus 1221 A----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deL 1283 (1630)
T 1xi4_A 1221 V----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL 1283 (1630)
T ss_pred h----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHH
Confidence 3 14555666666666666666655544 2345555555555566666666555443 22233344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH--HccCCHHHHHHHHHHHhhhcCCCC------ChhHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSAC--SHAGLVQEGWHWLNTMGHEFNIEP------GVEHY 430 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~ 430 (644)
..++..|.+.|.+++|+.+++..... .|. ...|+-+...+ .+-+++.++.++|..- .+++| +...|
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~r---ini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh---cccchHhHHHHHHHHH
Confidence 45666666666666666666555432 221 22332233333 3333444444444422 23333 34556
Q ss_pred HHHHHHHhhcCCHHHHH
Q 006457 431 GCMVDLLGRAGKLKEAY 447 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~ 447 (644)
.-++-.|.+.|+++.|.
T Consensus 1359 ~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHhcccHHHHH
Confidence 66666666666666665
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3e-16 Score=158.92 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=195.3
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAG 365 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 365 (644)
+...+..+...+.+.|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999876 56788899999999999999999999998763 467899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNY-----------ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 434 (644)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+.+.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 3432 2233457788999999999999999976432223688999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 512 (644)
..|.+.|++++|.+.|+++ ...| +..+|..+..++...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 2333 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.+.++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=8.5e-15 Score=142.58 Aligned_cols=270 Identities=9% Similarity=-0.040 Sum_probs=215.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCH----hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDA----VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVL 306 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 306 (644)
.-....|++..|+..++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcH
Confidence 345568999999999988755432 3455678899999999999876533 2456777888888899999999
Q ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006457 307 RLGKCIHDQVIKMDL-EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA 385 (644)
Q Consensus 307 ~~a~~i~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (644)
+.|.+.++.+...+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 999999999988774 44566777788999999999999999998 567789999999999999999999999999986
Q ss_pred CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 006457 386 GVRPNYITF---VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFV 460 (644)
Q Consensus 386 g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 460 (644)
.|+.... ...+..+...|++++|..+|+++... .+.+...++.+..+|.+.|++++|.+.|+++ ...| +..
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3654311 12334445669999999999999774 4567889999999999999999999999986 3444 677
Q ss_pred HHHHHHHHHHhcCChhH-HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 461 VWGSLLGACRIHKNVDL-GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
+|..++..+...|+.++ +.+.++++++++|+++... +...+.+.++++..-
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 89999999999999875 6789999999999987543 345555666665543
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=4.2e-16 Score=157.97 Aligned_cols=275 Identities=14% Similarity=0.095 Sum_probs=203.5
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHH-HHHHhHHcCCCCC--ChhhHHHHHHHHHccccHHHHHHHHH
Q 006457 238 HVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALD-VFDQMVKSTDVKC--NAVTLSAVLLAIAHLGVLRLGKCIHD 314 (644)
Q Consensus 238 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~ 314 (644)
.++.+...|+.+...+.. ++...|++++|++ .|.+......-.| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344455555555443322 3445588999998 8887651211122 35668888899999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006457 315 QVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY 391 (644)
Q Consensus 315 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 391 (644)
.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 999875 55778889999999999999999999998763 467899999999999999999999999999853 332
Q ss_pred H-HHHH---------------HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 006457 392 I-TFVS---------------VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K 454 (644)
Q Consensus 392 ~-t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 454 (644)
. .+.. .+..+...|++++|..+|+.+.+...-.++..++..+...|.+.|++++|.+.++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2111 233344889999999999999764222225889999999999999999999999986 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 455 VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 455 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
..| +..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334 57799999999999999999999999999999999999999999999999999999999998764
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.1e-15 Score=160.70 Aligned_cols=370 Identities=11% Similarity=-0.007 Sum_probs=200.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----------CCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCC
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQR----------IRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGG 176 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 176 (644)
....||.|...|...|+.++|++.|++..+. +....+|+.+...|...|++++|...+++...-....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~-- 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF-- 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc--
Confidence 3456777777777788888877777653211 2345678888888888888888888887764211100
Q ss_pred CCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhc--CCHHHHHHHHhcCC--C-
Q 006457 177 ASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARG--GHVDVSRKVFDGMI--E- 251 (644)
Q Consensus 177 ~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~--~- 251 (644)
.....++ ...++..+..++.+. +++++|...|++.. .
T Consensus 128 ----~~~~~~~----------------------------------~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 128 ----SSPYRIE----------------------------------SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp ----CCSSCCC----------------------------------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred ----ccccchh----------------------------------hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 0000010 112233333233322 34555555555542 1
Q ss_pred CCHhHHHHHHHH---HHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCc
Q 006457 252 KDAVTWNSIIAI---YAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEES 324 (644)
Q Consensus 252 ~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~ 324 (644)
.++..+..+..+ +...++.++|++.|++..+. -+.+..++..+...+.. .++.++|...++...+.. +.+
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~ 246 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGV 246 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSC
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccH
Confidence 233334333332 23345555566666555411 12223333333333322 234555666666555543 334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHh-------------------cCCHHHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGM-------------------HCRAREALDLFYKM 382 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m 382 (644)
..++..+...|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555566666666666666666665442 2 33344444444322 22356788888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh----HHHHHHH-HHhhcCCHHHHHHHHHhC-CCC
Q 006457 383 IKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVE----HYGCMVD-LLGRAGKLKEAYDLIEGM-KVK 456 (644)
Q Consensus 383 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~ 456 (644)
.+.. +.+..++..+...+...|++++|...|++... +.|+.. .+..+.. .+...|++++|++.|++. .+.
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7753 33455677788889999999999999998855 233322 2333333 234678999999998875 566
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
|+...+... ...+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 403 ~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 403 QKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred cccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 665443322 3445677888889999999999999999999999999999999988766443333444
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=8.1e-14 Score=147.02 Aligned_cols=352 Identities=13% Similarity=0.003 Sum_probs=290.9
Q ss_pred CCeecHHHHHHHHHh----CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhc----CCCchHHHHH
Q 006457 139 RNIVSWTSMLTGYVQ----NDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSR----VTVNGVTEGA 210 (644)
Q Consensus 139 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~ 210 (644)
.+..++..+...|.. .+++++|+..|++.. ..+ +...+..+-..+.. .++.+.|.+.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~------------~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA------------EQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH------------HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 466677777777777 899999999999986 332 45566666666666 8899999999
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHH----CCChhHHHHHHHHhH
Q 006457 211 HGFVIKRGFDSEVGVGNTLIDAYAR----GGHVDVSRKVFDGMIE-KDAVTWNSIIAIYAQ----NGLAAEALDVFDQMV 281 (644)
Q Consensus 211 ~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 281 (644)
+....+.| ++..+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99998865 66778889999988 8899999999998744 367788889888988 889999999999997
Q ss_pred HcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC
Q 006457 282 KSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK----CGQVDLARKAFNQMKE 353 (644)
Q Consensus 282 ~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 353 (644)
..+ +...+..+...+.. .++.++|...+....+.| +...+..+..+|.. .+++++|...|++..+
T Consensus 179 -~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 179 -EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp -HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred -HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 443 66777778888877 899999999999999865 45677788888886 8899999999998765
Q ss_pred -CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHhhhcCC
Q 006457 354 -KNVRSWTAMIAGYGM----HCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA-----GLVQEGWHWLNTMGHEFNI 423 (644)
Q Consensus 354 -~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~ 423 (644)
.+...+..+...|.. .++.++|+++|++..+.| +...+..+...+... +++++|..+|+...+.
T Consensus 252 ~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 252 QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 466778888888887 899999999999998765 445666677777776 8999999999998652
Q ss_pred CCChhHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhH
Q 006457 424 EPGVEHYGCMVDLLGRAG---KLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
.+...+..|..+|.+.| ++++|.+.|++.-...+...+..|...+.. .++.++|...++++.+.+ ++..+
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence 34567788888888767 889999999987434578899999999988 899999999999998865 56889
Q ss_pred HHHHHHHhh----cCCchHHHHHHHHHhhCCC
Q 006457 497 VLLSNIYAN----AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 497 ~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 524 (644)
..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998 8999999999999987663
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.2e-15 Score=151.52 Aligned_cols=255 Identities=10% Similarity=-0.001 Sum_probs=177.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
.+..+...+...|++++|..+|+++. ..+..+|..+...+...|++++|+..|+++.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------------- 82 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR-------------------- 82 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 34445555555555555555555542 1244455555555555555555555555554
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH--------------HH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAM--------------IA 364 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~ 364 (644)
+.. +.+..++..+...|...|++++|.+.|+++.+ | +...+..+ ..
T Consensus 83 ----------------~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 83 ----------------MLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ----------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred ----------------hcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 332 22333444444445555555555555544332 1 11122222 22
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH
Q 006457 365 -GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKL 443 (644)
Q Consensus 365 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 443 (644)
.+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++.+... .+.+...+..+...|.+.|++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Confidence 3677888999999999998864 446788888999999999999999999998653 234578899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC------------CchhHHHHHHHHhhcCCc
Q 006457 444 KEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN------------NCGYHVLLSNIYANAGRW 509 (644)
Q Consensus 444 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~ 509 (644)
++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+ ++..+..++.+|...|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 9999999886 3333 5778999999999999999999999999999998 788999999999999999
Q ss_pred hHHHHHHHHH
Q 006457 510 EDVERTRSLM 519 (644)
Q Consensus 510 ~~a~~~~~~m 519 (644)
++|..+++..
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999988644
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=175.18 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=109.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 321 LEESVIVGTSIIDMYCKCGQVDLARKAFNQMK-------EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 321 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
......+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456689999999999999999999997653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGL-VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 394 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
|+++|.++++.|. .++|.++|++|.. .|+.||..+|++++....|.+-++...++...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 9999999999887 4788899999966 49999999999998877776555555444333
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=3.9e-15 Score=145.00 Aligned_cols=246 Identities=9% Similarity=0.020 Sum_probs=202.4
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCCh--hhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNA--VTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC 338 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (644)
|+-....|++.+|+..++... ...|+. .....+..++...|+++.|...++. .-+|+..++..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 445667899999999988765 344554 3556678899999999999876643 2456778888999999999
Q ss_pred CCHHHHHHHHHhcC----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006457 339 GQVDLARKAFNQMK----EK-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHW 413 (644)
Q Consensus 339 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 413 (644)
|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 456677788999999999999999987 46778888899999999999999999
Q ss_pred HHHHhhhcCCCCChhH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 414 LNTMGHEFNIEPGVEH---YGCMVDLLGRAGKLKEAYDLIEGM--KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 414 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
|+.+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..+++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999663 465321 233445555679999999999988 23457889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCCchH-HHHHHHHHhhC
Q 006457 489 EPNNCGYHVLLSNIYANAGRWED-VERTRSLMKNR 522 (644)
Q Consensus 489 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 522 (644)
+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987 56888888753
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=174.81 Aligned_cols=149 Identities=11% Similarity=0.077 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHhhcC------CCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHH
Q 006457 7 SSVSSVVSNVDKHSTNTNLTTLFNKYV------DKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAI 80 (644)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~A~~~f~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 80 (644)
.+||+||++|++.|++++|.++|++|. ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999998764 24799999999999999999999999999999999999999999999
Q ss_pred HHHhccCCc-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC---CCCeecHHHHHHHHHhCC
Q 006457 81 KSCSALHDL-HSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR---IRNIVSWTSMLTGYVQND 155 (644)
Q Consensus 81 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g 155 (644)
.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+... .+.+.+-+.|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999998887765555555554444332 122445556667777665
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=3.1e-14 Score=141.32 Aligned_cols=257 Identities=11% Similarity=-0.005 Sum_probs=173.7
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHH
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---EKDAVTWNSIIAI 263 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 263 (644)
+...+......+...|+++.|..+++.+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44556677778889999999999999998875 4467888999999999999999999999873 3477889999999
Q ss_pred HHHCCChhHHHHHHHHhHHcCCCCCCh-hhHHHH--------------HH-HHHccccHHHHHHHHHHHHHhCCCCchhH
Q 006457 264 YAQNGLAAEALDVFDQMVKSTDVKCNA-VTLSAV--------------LL-AIAHLGVLRLGKCIHDQVIKMDLEESVIV 327 (644)
Q Consensus 264 ~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~l--------------l~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 327 (644)
|...|++++|++.|+++. .. .|+. ..+..+ .. .+...|++++|...+..+.+.. +.+..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWL-LS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHH-HT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHH-Hh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 999999999999999997 32 2332 222222 11 2556677777777777776654 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 66666667777777777666665542 244566666666666666666666666666542 23455566666666666
Q ss_pred CCHHHHHHHHHHHhhhcCCCC-------------ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 405 GLVQEGWHWLNTMGHEFNIEP-------------GVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
|++++|...++.+... .| +...|..+..+|.+.|++++|..++++
T Consensus 254 g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666666665432 12 244555555555556666655555544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=5.6e-13 Score=139.89 Aligned_cols=382 Identities=9% Similarity=-0.030 Sum_probs=223.5
Q ss_pred cccHHHHHHHHhccCCcHHHHHHHHHHHHh--------CCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-------
Q 006457 73 RSTFPCAIKSCSALHDLHSGKQAHQQAFIF--------GFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR------- 137 (644)
Q Consensus 73 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 137 (644)
...|+.+-..+...|+.++|.+.++..++. ..+....+|+.+...|...|++++|...+++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666777777777777666542 11223567888999999999999998888765321
Q ss_pred -CC-CeecHHHHHHHHHh--CCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh-hHHHHHHH---hhcCCCchHHHH
Q 006457 138 -IR-NIVSWTSMLTGYVQ--NDNAREALLLFKEFLLEESECGGASENSDNVFVDSV-AIASVLSA---CSRVTVNGVTEG 209 (644)
Q Consensus 138 -~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~~---~~~~~~~~~a~~ 209 (644)
.+ ...+++.+..++.. .+++++|+..|++.. .+.|+.. .+..+..+ ....++.+.+.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal--------------~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL--------------EKKPKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH--------------HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH--------------HhCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 11 23456655555554 457899999999976 2345433 33333222 445677788888
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHh----cCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHH
Q 006457 210 AHGFVIKRGFDSEVGVGNTLIDAYAR----GGHVDVSRKVFDGM---IEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVK 282 (644)
Q Consensus 210 ~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 282 (644)
.+...++.. +.+..++..+...+.. .|++++|.+.+++. ...+..++..+...|...|++++|++.|.+..+
T Consensus 197 ~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 197 PLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 888887764 3345566656555544 45678888888876 334677888899999999999999999998872
Q ss_pred cCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhh
Q 006457 283 STDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMK---EKNVRS 358 (644)
Q Consensus 283 ~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 358 (644)
..|+ ..++..+...+...+....+ .. ...........+..+.|...|+... ..+..+
T Consensus 276 ---~~p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 336 (472)
T 4g1t_A 276 ---YIPNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336 (472)
T ss_dssp ---HSTTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred ---hCCChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence 2343 44444444443221111100 00 0001111112234567777777654 345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYI--TFVSVLS-ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
|..+...|...|++++|++.|++..+....|... .+..+.. ...+.|+.++|+..|++..+ +.|+........
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~- 412 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK- 412 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH-
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH-
Confidence 9999999999999999999999998854333221 2222222 34578999999999998854 566543332222
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
..+.+++++. . .+.+..+|..+...+...|++++|++.++++++++|.+|.+..-++
T Consensus 413 --------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 --------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2333333332 2 2336679999999999999999999999999999998887766554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.8e-14 Score=133.63 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=143.9
Q ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hhhHHHHHHHH
Q 006457 297 LLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K----N----VRSWTAMIAGY 366 (644)
Q Consensus 297 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~ 366 (644)
...+...|++++|...+..+.+.. .+..++..+...|...|++++|...|++..+ | + ...|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333334444444444444444433 3344444455555555555555555554432 1 1 35667777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 445 (644)
...|++++|++.|++..+. .|+. ..+...|++++|...++.+.. ..| +...+..+...|.+.|++++
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHH
Confidence 7778888888888777764 3443 234556778888888887754 233 46677778888888888888
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 446 AYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 446 A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888876 22 2356788888888888899999999999999989988888899999999999999999988887653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=6.2e-14 Score=130.24 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=155.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006457 322 EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVL 398 (644)
Q Consensus 322 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 398 (644)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667778888889999999999999998764 356788889999999999999999999998853 33567888888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 006457 399 SACSHA-----------GLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSL 465 (644)
Q Consensus 399 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 465 (644)
.++... |++++|+..|+...+ +.| +...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 999999999999865 345 4788899999999999999999999886 212678899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1e-13 Score=132.30 Aligned_cols=234 Identities=9% Similarity=-0.079 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC--Cc----hhHH
Q 006457 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE--ES----VIVG 328 (644)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~----~~~~ 328 (644)
..|..+...+...|++++|+..|++.. ... .+...+..+...+...|++++|...+..+.+.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456667777777777777777777776 333 56667777777777777777777777777664311 11 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKE--KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
..+...|.+.|++++|...|++..+ ++ ...+...|++++|+..++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 7788888888888888888887664 33 234666788889999999888742 2345577788888889999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006457 407 VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKK 484 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 484 (644)
+++|...|+.+... .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988663 2345788888999999999999999999876 2333 577888899999999999999999999
Q ss_pred hhccC------CCCchhHHHHHH
Q 006457 485 LFELE------PNNCGYHVLLSN 501 (644)
Q Consensus 485 ~~~~~------p~~~~~~~~l~~ 501 (644)
++++. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99988 777666665544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.2e-13 Score=131.53 Aligned_cols=240 Identities=12% Similarity=-0.039 Sum_probs=176.8
Q ss_pred CCChhHHHHHHHHhHHcCCC-C--CChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 006457 267 NGLAAEALDVFDQMVKSTDV-K--CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDL 343 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~-~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 343 (644)
.|++++|+..|+++. .... . .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456777777777776 3211 1 134556666677777777777777777777654 3456777888888888888888
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 006457 344 ARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHE 420 (644)
Q Consensus 344 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 420 (644)
|...|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887763 35778888999999999999999999999885 455444444555566779999999999887663
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 421 FNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 421 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
.+++...+. ++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 334444444 777788888889999998876 33332 568888999999999999999999999999998755
Q ss_pred hHHHHHHHHhhcCCchHHHHHH
Q 006457 495 YHVLLSNIYANAGRWEDVERTR 516 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~ 516 (644)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 55678889999887765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=4.3e-13 Score=129.31 Aligned_cols=247 Identities=12% Similarity=0.040 Sum_probs=143.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC--hhhHHHHHH
Q 006457 224 GVGNTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN--AVTLSAVLL 298 (644)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~ 298 (644)
.........+...|++++|...|++..+ .+..+|..+...|...|++++|++.|++.. ..+..|+ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence 3445566677777777777777777622 245567777777777777777777777776 3221111 122556666
Q ss_pred HHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHH-HHHHhcCCHHH
Q 006457 299 AIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMI-AGYGMHCRARE 374 (644)
Q Consensus 299 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~~~g~~~~ 374 (644)
.+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+. ..|. .+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHH
Confidence 6666677777777776666654 33445566666666666666666666666553 2334455454 3333 335666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGL---VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
|++.|+++.+.. +.+...+..+..++...|+ +++|...++.+.+ +..
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----------------------------~~~ 210 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE-----------------------------VCA 210 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH-----------------------------HHG
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH-----------------------------HHh
Confidence 666666555531 1123333334444433333 3334443333322 111
Q ss_pred hCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 452 GMKVKAD------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 452 ~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
. .|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....
T Consensus 211 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 211 P---GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp G---GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred c---ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 1 122 246677788888899999999999999999999988777776654443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=2.8e-12 Score=121.97 Aligned_cols=197 Identities=9% Similarity=-0.030 Sum_probs=160.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566777888888888888888887653 356778888888889999999999999888763 34677788888888
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
...|++++|..+++.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999988855 23445 4677888888899999999999988876 2233 567888888889999999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888888999999999999999999998887643
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=2.2e-11 Score=126.45 Aligned_cols=370 Identities=9% Similarity=0.011 Sum_probs=189.6
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---HHHHHHHhhCCCCCCCeecHHHHHHHHHhCC-
Q 006457 80 IKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGEL---SDARKLFDEIPQRIRNIVSWTSMLTGYVQND- 155 (644)
Q Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g- 155 (644)
...+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+ .+..++..|...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--TSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--CCHHHHHHHHHHHHhCCC
Confidence 334445566777777777776665 223333445555556666 777777777766 46666666666555544
Q ss_pred ----ChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCc---hHHHHHHHHHHHhCCCCCccHHHH
Q 006457 156 ----NAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVN---GVTEGAHGFVIKRGFDSEVGVGNT 228 (644)
Q Consensus 156 ----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ 228 (644)
++++|+..|++.. ..+... .+..+-..+...+.. ..+.+.+......| ++.....
T Consensus 85 ~~~~~~~~A~~~~~~Aa------------~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~ 146 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAF------------ANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLA 146 (452)
T ss_dssp CCHHHHHHHHHHHHHHH------------HTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHH
T ss_pred CCCcCHHHHHHHHHHHH------------HCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHH
Confidence 5667777777665 222111 222222222222211 12222232233333 2334444
Q ss_pred HHHHHHhcCC----HHHHHHHHhcCCCCCHhHHHHHHHHHHHCC---ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHH
Q 006457 229 LIDAYARGGH----VDVSRKVFDGMIEKDAVTWNSIIAIYAQNG---LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIA 301 (644)
Q Consensus 229 li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~ 301 (644)
|...|...+. .+.+..+++.....++.++..|...|...| +.++|++.|
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~------------------------ 202 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQM------------------------ 202 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHH------------------------
Confidence 5555555442 333333344444444444444444444444 444444444
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhhHHHHHHH-H--HhcCCHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKC----GQVDLARKAFNQMKEKNVRSWTAMIAG-Y--GMHCRARE 374 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~ 374 (644)
....+.| +++...+..|..+|... +++++|...|++....+...+..|... | ...|++++
T Consensus 203 ------------~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 203 ------------EAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp ------------HHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred ------------HHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Confidence 4444444 22333333444555433 567777777776663345566666665 3 45778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAG-----LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKE 445 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 445 (644)
|+++|++..+.| +...+..+...|. .| ++++|..+|+... .-+...+..|..+|.. ..++++
T Consensus 270 A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 270 MMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 888888888766 4555555555555 44 8888888888773 4456677777777766 348888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHHHHHHHH--hhcCCchHHHHHHHHH
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY--ANAGRWEDVERTRSLM 519 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m 519 (644)
|...|++.-...+......|...|.. ..|.++|...++++.+..+.. ....+..+. ...++.++|.++.+.-
T Consensus 341 A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 341 ALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88888876333345556666666653 458888888888888876543 333333332 2334566666666654
Q ss_pred h
Q 006457 520 K 520 (644)
Q Consensus 520 ~ 520 (644)
+
T Consensus 419 ~ 419 (452)
T 3e4b_A 419 L 419 (452)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=3.8e-12 Score=118.49 Aligned_cols=196 Identities=10% Similarity=-0.049 Sum_probs=138.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA 400 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (644)
+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344556666677777777777777766542 345567777777777777777777777777653 3356667777777
Q ss_pred HHcc-CCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 006457 401 CSHA-GLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 401 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 476 (644)
+... |++++|..+++.+.. .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 788888887777755 223333 566777777777788888887777765 2223 4667777777777888888
Q ss_pred HHHHHHHHhhccCC-CCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 477 LGEIAAKKLFELEP-NNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 477 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888888888777 7777777777777788888888887777754
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.1e-12 Score=124.08 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 333344444444444444444444331 234455555566666666666666666666542 3345555666666666
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
.|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 66666666666666442 2234556666666666677777776666654 11 22455666677777777777777777
Q ss_pred HHHhhccCCCCchhHHHHHHH
Q 006457 482 AKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~ 502 (644)
++++++++|+++..+..+..+
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHccCcchHHHHHHHHHH
Confidence 777777777766665555443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=6e-12 Score=119.69 Aligned_cols=208 Identities=12% Similarity=0.008 Sum_probs=129.1
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 254 AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
...|..+...|...|++++|++.|+++.+. .+.+...+..+...+...|++++|...+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~---------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR---------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC----------
Confidence 567788888888888888888888887622 12244455555555555555555555555555432 12
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 006457 334 MYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
+...|..+...|...|++++|+++|+++.+.+..| +...+..+...+...|++++|..
T Consensus 104 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 104 ---------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444455555555555555555555555422233 33455555666666666666666
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 413 WLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVK-ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...+++++++.|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66666442 1224566666777777777777777777665 222 3455677777777888888888888888888888
Q ss_pred CCchhHH
Q 006457 491 NNCGYHV 497 (644)
Q Consensus 491 ~~~~~~~ 497 (644)
+++....
T Consensus 241 ~~~~~~~ 247 (252)
T 2ho1_A 241 GSLEYQE 247 (252)
T ss_dssp TSHHHHH
T ss_pred CCHHHHH
Confidence 8765443
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.8e-11 Score=118.03 Aligned_cols=225 Identities=9% Similarity=-0.059 Sum_probs=133.3
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc----cccHHHHHHHHHHHHHhCCCCchhHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH----LGVLRLGKCIHDQVIKMDLEESVIVG 328 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~ 328 (644)
+..++..+...|...|++++|+..|++.. . +.+...+..+...+.. .+++++|...+....+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45556666666666777777777776665 3 2233445555555555 666666666666666554 44555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 329 TSIIDMYCK----CGQVDLARKAFNQMKE-KNVRSWTAMIAGYGM----HCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 329 ~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 556666666 6666666666665543 244556666666666 666777777777666654 3444555555
Q ss_pred HHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006457 400 ACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKEAYDLIEGMKVKADFVVWGSLLGACRI 471 (644)
Q Consensus 400 a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 471 (644)
.+.. .+++++|..+|+...+. .+...+..+..+|.. .+++++|.+.|++.-...+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 5555 66666776666666442 234555556666666 66666666666654211234455555566655
Q ss_pred ----cCChhHHHHHHHHhhccCCC
Q 006457 472 ----HKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 472 ----~g~~~~a~~~~~~~~~~~p~ 491 (644)
.++.++|...++++.+++|+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.9e-11 Score=117.94 Aligned_cols=224 Identities=11% Similarity=-0.053 Sum_probs=194.2
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHH
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK----CGQVDLARKAFNQMKE-KNVRSWTAMI 363 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 363 (644)
+..++..+...+...|++++|...+....+ +.+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456677788888899999999999999998 3456678889999999 9999999999998764 4677899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 364 AGYGM----HCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 364 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
..|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999662 3 5677888888
Q ss_pred HHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh--
Q 006457 436 LLGR----AGKLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN-- 505 (644)
Q Consensus 436 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 505 (644)
.|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987323467788888899988 9999999999999999877 5788999999999
Q ss_pred --cCCchHHHHHHHHHhhCCC
Q 006457 506 --AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 506 --~g~~~~a~~~~~~m~~~~~ 524 (644)
.|++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.2e-12 Score=123.65 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=155.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLS 399 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 399 (644)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667788888999999999999998764 356788999999999999999999999999863 446788888999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhH
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDL 477 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~ 477 (644)
.+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999663 2346788999999999999999999999986 22 3367789999999999999999
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 478 GEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 478 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998764
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=4.7e-12 Score=131.53 Aligned_cols=311 Identities=9% Similarity=-0.002 Sum_probs=211.8
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCH---HHHHHHHhcCCCCCHhHHHHHHHHHHHCC--
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHV---DVSRKVFDGMIEKDAVTWNSIIAIYAQNG-- 268 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 268 (644)
+...+.+.|+++.|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566789999999999998887 344556677777788888 99999999987767777877877666665
Q ss_pred ---ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHH---HHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---
Q 006457 269 ---LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRL---GKCIHDQVIKMDLEESVIVGTSIIDMYCKCG--- 339 (644)
Q Consensus 269 ---~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~---a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--- 339 (644)
++++|+..|++.. ..|.. ..+..+...+...+..+. +.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa-~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAF-ANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CHHHHHHHHHHHHHHH-HTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCHHHHHHHHHHHH-HCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7789999999998 54432 255666666665554333 344444444444 3455667778888777
Q ss_pred -CHHHHHHHHHhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHH
Q 006457 340 -QVDLARKAFNQMKEKNVRSWTAMIAGYGMHC---RAREALDLFYKMIKAGVRPNYITFVSVLSACSHA----GLVQEGW 411 (644)
Q Consensus 340 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~ 411 (644)
..+.+..++......+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4556666777777777778899999999999 8999999999999887 55666555666666554 7899999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHH-H--hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHH
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDL-L--GRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHK-----NVDLGEIAAK 483 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~ 483 (644)
.+|+... +-+...+..|..+ | ...|++++|.+.|++.-...+...+..|...|. .| |.++|...++
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9999883 3456677777777 4 568899999999988733346777777777776 55 9999999999
Q ss_pred HhhccCCCCchhHHHHHHHHhh----cCCchHHHHHHHHHhhCCC
Q 006457 484 KLFELEPNNCGYHVLLSNIYAN----AGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 524 (644)
++. |.++..+..|+.+|.. ..++++|.+.+++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 988 8888999999988877 3489999999999887764
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.2e-11 Score=115.11 Aligned_cols=173 Identities=13% Similarity=-0.018 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMH-CRAREALDLFYKMIKAGVRPN-YITFVSVLS 399 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 399 (644)
...+..+...|...|++++|.+.|++..+ .+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 33445555555666666666666655432 2455666677777777 777777777777776323333 456677777
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChh
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVK--ADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~ 476 (644)
++...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 778888888888888877552 2234677778888888888888888888776 222 35666777777778889999
Q ss_pred HHHHHHHHhhccCCCCchhHHHH
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
.+...++.+.+..|+++.....+
T Consensus 200 ~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 200 AAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999998888888887665544
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=5.7e-12 Score=126.84 Aligned_cols=246 Identities=10% Similarity=0.035 Sum_probs=195.5
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHcccc-HHHHHHHHHHHHHhCCCCchhHHHHH
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGV-LRLGKCIHDQVIKMDLEESVIVGTSI 331 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~l 331 (644)
+..+|+.+...+...|++++|++.|++..+. -+-+...|..+..++...|+ +++|...++.+++.. +.+...|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 3456777888888888889999888888721 13345677778888888886 888988888888876 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCH
Q 006457 332 IDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH-AGLV 407 (644)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~ 407 (644)
..+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999998763 467889999999999999999999999999863 3367788888888888 6665
Q ss_pred HHH-----HHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-----
Q 006457 408 QEG-----WHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAG--KLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHK----- 473 (644)
Q Consensus 408 ~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g----- 473 (644)
++| +..|+..+. +.| +...|..+..+|.+.| ++++|.+.+.++...| +...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 477887755 445 4778888899999888 6899999988875455 4567788888887764
Q ss_pred ---C-hhHHHHHHHHh-hccCCCCchhHHHHHHHHhh
Q 006457 474 ---N-VDLGEIAAKKL-FELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 474 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 505 (644)
+ .++|..+++++ .+++|.....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 99999998888888776543
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=8.6e-12 Score=115.68 Aligned_cols=190 Identities=11% Similarity=-0.009 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMY 335 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 335 (644)
.|..+...+.+.|++++|+..|++.. . --+.+...+..+..++...|++++|...++..++.. +.+...+..+...|
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al-~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERAL-K-ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-T-TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 33444444444444444444444443 1 111223333333444444444444444444444332 22333444444444
Q ss_pred Hhc-----------CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 336 CKC-----------GQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 336 ~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 566666666655442 2 34556666666666666666666666666654 5555666666666
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
...|++++|+..|+.+.+ ..| +...+..+..++.+.|++++|.+.|++.
T Consensus 162 ~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666644 223 3555666666666666666666666543
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=2e-11 Score=117.49 Aligned_cols=227 Identities=8% Similarity=-0.063 Sum_probs=179.6
Q ss_pred HhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HhHHHHHH
Q 006457 188 SVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIE--KD----AVTWNSII 261 (644)
Q Consensus 188 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li 261 (644)
...+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++..+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566677889999999999999998764 34566899999999999999999999998743 22 33588999
Q ss_pred HHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCC
Q 006457 262 AIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII-DMYCKCGQ 340 (644)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~~~~~g~ 340 (644)
..|...|++++|++.|++..+. .+.+..++..+...+...|++++|...++..++.. +.+...+..+. ..|. .++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999832 23356788899999999999999999999988763 45566777777 4444 569
Q ss_pred HHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 006457 341 VDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCR---AREALDLFYKMIKAG-VRPN------YITFVSVLSACSHAGLV 407 (644)
Q Consensus 341 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~ 407 (644)
+++|.+.|++..+ | +...|..+...+...|+ +++|...|++..+.. -.|+ ...+..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998764 3 46778888888888888 888999999988642 1233 14666777788888888
Q ss_pred HHHHHHHHHHhh
Q 006457 408 QEGWHWLNTMGH 419 (644)
Q Consensus 408 ~~a~~~~~~~~~ 419 (644)
++|..+|+.+.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888854
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=3.6e-12 Score=130.61 Aligned_cols=195 Identities=11% Similarity=0.019 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCR--------------------AREALD 377 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 377 (644)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555554432 11 2355555666666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHH
Q 006457 378 LFYKMIKA----GVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 378 ~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 448 (644)
.+++.... +..| ...++..+...+...|++++|...++.......-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66655431 1111 1235556666666777777777777666432111111 2356666777777777777777
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHHHHHHHHhhcCCchHHHH
Q 006457 449 LIEGM----KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 449 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76654 11111 3456666677777777777777777777654322 4466677777777788888877
Q ss_pred HHHHHhh
Q 006457 515 TRSLMKN 521 (644)
Q Consensus 515 ~~~~m~~ 521 (644)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=2.9e-10 Score=122.11 Aligned_cols=423 Identities=9% Similarity=-0.014 Sum_probs=284.9
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---hHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGE---LSDARK 129 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 129 (644)
...+.+..|++....+ +-|..+|..++..+...+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666666666655 347888999999998889999999999999987 46677888888888888888 999999
Q ss_pred HHhhCCCCC---CCeecHHHHHHHHHhCCCh--------hHHHHHHHHhHhhhhccCCCCCCCCCc-cCCH-hhHHHHHH
Q 006457 130 LFDEIPQRI---RNIVSWTSMLTGYVQNDNA--------REALLLFKEFLLEESECGGASENSDNV-FVDS-VAIASVLS 196 (644)
Q Consensus 130 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~~~~~~~~~~~~-~p~~-~t~~~ll~ 196 (644)
+|++..... |++..|..-+.-..+.++. +...++|+.... ..|. .|+. ..|...+.
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~-----------~vG~~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD-----------KCAIFEPKSIQFWNEYLH 193 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH-----------HTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-----------HhCcccccchHHHHHHHH
Confidence 999988774 7888888877655554433 234467776552 3455 5543 34444444
Q ss_pred Hhhc---------CCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh-------------cCCHHHHHHHHhcC-----
Q 006457 197 ACSR---------VTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR-------------GGHVDVSRKVFDGM----- 249 (644)
Q Consensus 197 ~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~----- 249 (644)
-... .+..+.++.+|..++......-..+|......-.. ..+++.|...+.++
T Consensus 194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3221 22356677888777642111112233221111101 11234455554331
Q ss_pred --C----C----------C--C------HhHHHHHHHHHHHCCC-------hhHHHHHHHHhHHcCCCCCChhhHHHHHH
Q 006457 250 --I----E----------K--D------AVTWNSIIAIYAQNGL-------AAEALDVFDQMVKSTDVKCNAVTLSAVLL 298 (644)
Q Consensus 250 --~----~----------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 298 (644)
. . | + ...|...+.---.++. .+.+..+|++.... .+-+...|.....
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMAN 351 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 1 0 0 0 2356666654333321 23456678887632 3345666666677
Q ss_pred HHHccccHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC---------
Q 006457 299 AIAHLGVLRLGK-CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-------------KN--------- 355 (644)
Q Consensus 299 a~~~~~~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~--------- 355 (644)
-+...|+.+.|. .+++..+.. ++.+...+-.++...-+.|+++.|.++|+++.. |+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 777788888896 999999874 356677788889999999999999999998763 21
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCChhHH
Q 006457 356 ---VRSWTAMIAGYGMHCRAREALDLFYKMIKA-GVRPNYITFVSVLSACSHA-GLVQEGWHWLNTMGHEFNIEPGVEHY 430 (644)
Q Consensus 356 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~ 430 (644)
...|...+....+.|..+.|..+|.+..+. + .+....|......-.+. ++++.|..+|+...+. .+-+...+
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w 507 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHH
Confidence 235888888888889999999999999875 2 11223333222222333 5589999999999875 33456677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 431 GCMVDLLGRAGKLKEAYDLIEGM-KVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 88899889999999999999986 2223 3468999999999999999999999999999998753
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.5e-12 Score=133.95 Aligned_cols=259 Identities=10% Similarity=-0.012 Sum_probs=156.8
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCC-h----hhHHHHHHHHHccccHHHHHHHHHHHHHh----C-CCCchhHHH
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCN-A----VTLSAVLLAIAHLGVLRLGKCIHDQVIKM----D-LEESVIVGT 329 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~ 329 (644)
+...+...|++++|+..|++..+. .|+ . ..+..+...+...|+++.|...++++.+. + .+....++.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334444455555555555444411 111 1 23444444444455555555554444332 1 012234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKEK---------NVRSWTAMIAGYGMHCR-----------------AREALDLFYKMI 383 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~ 383 (644)
.+...|...|++++|...|++..+. ...+|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5666666666666666666554321 12356666677777777 777777777654
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 006457 384 KA----GVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGMK 454 (644)
Q Consensus 384 ~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 454 (644)
+. +-.| ...++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++.-
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 32 1112 2236666777778888888888888777542111111 2367777888888888888888887651
Q ss_pred -C---CC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 455 -V---KA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 455 -~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
. .. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 14567777888888899999999988888764332 3478888999999999999999988876
Q ss_pred h
Q 006457 521 N 521 (644)
Q Consensus 521 ~ 521 (644)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=4.3e-12 Score=126.07 Aligned_cols=260 Identities=12% Similarity=0.011 Sum_probs=166.8
Q ss_pred HHHHHHHCCChhHHHHHHHHhHHcCCCCCC-----hhhHHHHHHHHHccccHHHHHHHHHHHHHh----CCC-CchhHHH
Q 006457 260 IIAIYAQNGLAAEALDVFDQMVKSTDVKCN-----AVTLSAVLLAIAHLGVLRLGKCIHDQVIKM----DLE-ESVIVGT 329 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~ 329 (644)
....+...|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...+..+.+. +.. ....++.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344455555555555555555421 122 133444445555555555555555544321 111 1234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 006457 330 SIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCR--------------------AREALDLFY 380 (644)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 380 (644)
.+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666677777777777777666442 12 2366677777777777 778887777
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 381 KMIKA----GVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 381 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
+.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76532 2122 1335667777788888888888888877542111111 3367788888889999999988887
Q ss_pred hCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHHHHHHHHhhcCCchHHHHHHH
Q 006457 452 GMK----VKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 452 ~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
+.- ..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 651 1112 4467778888899999999999999998865432 3477889999999999999999999
Q ss_pred HHhhC
Q 006457 518 LMKNR 522 (644)
Q Consensus 518 ~m~~~ 522 (644)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88753
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.6e-11 Score=110.47 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=123.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 434 (644)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 44567777777777777778888777777642 235566777777777888888888877777542 233456666677
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH
Q 006457 435 DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV 512 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 512 (644)
..+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877765 2233 5667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888887654
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=1.1e-11 Score=124.91 Aligned_cols=225 Identities=10% Similarity=0.038 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006457 291 VTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ-VDLARKAFNQMKE---KNVRSWTAMIAGY 366 (644)
Q Consensus 291 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 366 (644)
..+..+...+...|++++|...++.+++.. +.+..+|+.+...|.+.|+ +++|...|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778888999999999999999876 5567888999999999997 9999999998874 4678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhh-cCCHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGR-AGKLK 444 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 444 (644)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++ +.| +...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 34678899999999999999999999999976 345 57889999999999 66668
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC--------
Q 006457 445 EA-----YDLIEGM-KVKA-DFVVWGSLLGACRIHK--NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG-------- 507 (644)
Q Consensus 445 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 507 (644)
+| ++.|++. ...| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4667665 3445 5678999999998888 689999999998 899999999999999999875
Q ss_pred -CchHHHHHHHHH-hh
Q 006457 508 -RWEDVERTRSLM-KN 521 (644)
Q Consensus 508 -~~~~a~~~~~~m-~~ 521 (644)
.+++|.++++.+ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 53
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=7.5e-12 Score=120.68 Aligned_cols=218 Identities=11% Similarity=-0.013 Sum_probs=179.7
Q ss_pred HccccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHH
Q 006457 301 AHLGVLRLGKCIHDQVIKMDL---EESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRARE 374 (644)
Q Consensus 301 ~~~~~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 374 (644)
...|++++|...++.+.+... +.+..++..+...|...|++++|...|++..+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345889999999999988642 22467788899999999999999999998763 467899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM- 453 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 453 (644)
|++.|+++.+.. +.+...+..+...+...|++++|..+|+.+.+ +.|+.......+..+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999863 34678888999999999999999999999965 3565555555566667889999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC----CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 454 K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN----NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 454 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
. .+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.+++..+..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 233444444 777778888899999999999988764 36889999999999999999999999998643
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=4.4e-12 Score=129.93 Aligned_cols=290 Identities=11% Similarity=-0.030 Sum_probs=168.7
Q ss_pred hhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----CHh
Q 006457 189 VAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSE----VGVGNTLIDAYARGGHVDVSRKVFDGMIE-----K----DAV 255 (644)
Q Consensus 189 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~ 255 (644)
..+...-..+...|+++.|...+..+++.. +.+ ..++..+...|...|++++|...|++... . ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444444555566666666666555542 111 13445555555555555555555554311 0 123
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006457 256 TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMY 335 (644)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 335 (644)
+|..+...|...|++++|+..+.+..+...-.++. .....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHH
Confidence 44455555555555555555555543110000110 00122444455555
Q ss_pred HhcCC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006457 336 CKCGQ--------------------VDLARKAFNQMKE-----K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAG 386 (644)
Q Consensus 336 ~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 386 (644)
...|+ +++|...|++..+ . ...+|..+...|...|++++|+..+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55555 5555555544321 1 12356777777777888888888887766421
Q ss_pred C-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---
Q 006457 387 V-RPN----YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGMK--- 454 (644)
Q Consensus 387 ~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 454 (644)
. .++ ..++..+...+...|++++|..+++.......-.++ ..++..+...|.+.|++++|.+.+++.-
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 236677777788888888888888877532111111 4567778888888899988888887651
Q ss_pred -CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccC------CCCchhHHHHHHHHhhcCCch
Q 006457 455 -VKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYANAGRWE 510 (644)
Q Consensus 455 -~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 510 (644)
..++ ..++..+...+...|++++|...+++++++. |....++..++.+|...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1112 4577788888899999999999999988763 333567778888888877664
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2e-12 Score=135.15 Aligned_cols=209 Identities=7% Similarity=-0.066 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 306 LRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQV-DLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
++.+...+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555443322 34666777778888888888 888888887653 3567888889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc--------CCHH
Q 006457 382 MIKAGVRPNYITFVSVLSACSHA---------GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRA--------GKLK 444 (644)
Q Consensus 382 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 444 (644)
..+. .|+...+..+...+... |++++|...|+++.+. -+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8874 57778888888888888 9999999999998652 233578888899999888 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHH
Q 006457 445 EAYDLIEGM-KVKA----DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 445 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 519 (644)
+|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999887 3345 77899999999999999999999999999999999999999999999999999998765443
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.7e-11 Score=125.87 Aligned_cols=263 Identities=9% Similarity=0.004 Sum_probs=159.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCH----hHHHHHHHHHHHCCChhHHHHHHHHhHHc---CC-CCCChhhHHHHH
Q 006457 229 LIDAYARGGHVDVSRKVFDGMIE---KDA----VTWNSIIAIYAQNGLAAEALDVFDQMVKS---TD-VKCNAVTLSAVL 297 (644)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~-~~p~~~t~~~ll 297 (644)
+...+...|++++|...|+++.+ .+. .+|..+...|...|++++|+..|++..+. .+ .+....++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 34444555555555555554411 121 24445555555555555555555544311 01 011223444445
Q ss_pred HHHHccccHHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC--
Q 006457 298 LAIAHLGVLRLGKCIHDQVIKM----D-LEESVIVGTSIIDMYCKCGQ-----------------VDLARKAFNQMKE-- 353 (644)
Q Consensus 298 ~a~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-- 353 (644)
..+...|++++|...+..+.+. + .+....++..+...|...|+ +++|.+.|++..+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554432 1 11223355566666666677 6666666655432
Q ss_pred ---C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 006457 354 ---K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPN----YITFVSVLSACSHAGLVQEGWHWLNTMGHEF 421 (644)
Q Consensus 354 ---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 421 (644)
. ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++......
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 224677778888888888888888888765311 011 2367778888888999999999888775421
Q ss_pred CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 422 NIEP----GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-V---KAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 422 ~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
.-.. ....+..+...|.+.|++++|.+.+++.- . .++ ..++..+...+...|++++|...+++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 15677888889999999999999888761 1 112 3477778889999999999999999998876
Q ss_pred CC
Q 006457 490 PN 491 (644)
Q Consensus 490 p~ 491 (644)
+.
T Consensus 374 ~~ 375 (411)
T 4a1s_A 374 XX 375 (411)
T ss_dssp CH
T ss_pred hh
Confidence 54
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=3.7e-11 Score=119.20 Aligned_cols=268 Identities=11% Similarity=-0.012 Sum_probs=149.2
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCHhHHHHHH
Q 006457 195 LSACSRVTVNGVTEGAHGFVIKRGFDSE----VGVGNTLIDAYARGGHVDVSRKVFDGMIE---------KDAVTWNSII 261 (644)
Q Consensus 195 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li 261 (644)
-..+...|+++.|...++.+.+.. +.+ ..++..+...|...|++++|.+.|++... ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344566677777777777776653 112 24566666677777777777776665421 1234566666
Q ss_pred HHHHHCCChhHHHHHHHHhHHcCCCCCC----hhhHHHHHHHHHcccc--------------------HHHHHHHHHHHH
Q 006457 262 AIYAQNGLAAEALDVFDQMVKSTDVKCN----AVTLSAVLLAIAHLGV--------------------LRLGKCIHDQVI 317 (644)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~a~~~~~~--------------------~~~a~~i~~~~~ 317 (644)
..|...|++++|+..+.+..+...-.++ ..++..+...+...|+ ++.|...+....
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6667777777777666665411111111 1234444444444455 444444443332
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-C
Q 006457 318 KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK--NVRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-N 390 (644)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 390 (644)
+. +.....+ ...++..+...|...|++++|+..+++..+. +..+ .
T Consensus 171 ~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 222 (338)
T 3ro2_A 171 SL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222 (338)
T ss_dssp HH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH
Confidence 21 0000000 1234555666666666666666666665532 1111 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGMK----VKAD---- 458 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~---- 458 (644)
..++..+...+...|++++|..+++.......-.++ ..++..+...|...|++++|...+++.- ..++
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 225566666677777777777777766432111111 4566677777778888888877776651 0111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
..++..+...+...|++++|...+++++++.+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 336677778888888888888888888877654
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=4.9e-09 Score=112.67 Aligned_cols=418 Identities=9% Similarity=-0.029 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCC---hhHHHHHHHH
Q 006457 91 SGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDN---AREALLLFKE 166 (644)
Q Consensus 91 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 166 (644)
.-...++..+... +-|...|..++..+.+.+.++.+..+|+.+... +.....|...+..-.+.+. .+.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444556666655 568999999999999999999999999988776 3466778888888888888 9999999999
Q ss_pred hHhhhhccCCCCCCCCC-ccCCHhhHHHHHHHhhcCCCc--------hHHHHHHHHHHH-hCC-CCC-ccHHHHHHHHHH
Q 006457 167 FLLEESECGGASENSDN-VFVDSVAIASVLSACSRVTVN--------GVTEGAHGFVIK-RGF-DSE-VGVGNTLIDAYA 234 (644)
Q Consensus 167 m~~~~~~~~~~~~~~~~-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~ 234 (644)
.. ... ..|+...|..-+.-..+.++. +...++|+.++. .|. .++ ..+|...+....
T Consensus 129 al------------~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 129 CL------------SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE 196 (679)
T ss_dssp HT------------CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HH------------HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 85 222 247777776666544443332 345577777655 466 554 467888777654
Q ss_pred h---------cCCHHHHHHHHhcCCC-C--CH-hHHH---HHHHHHH----------HCCChhHHHHHHHHhHHc-CCC-
Q 006457 235 R---------GGHVDVSRKVFDGMIE-K--DA-VTWN---SIIAIYA----------QNGLAAEALDVFDQMVKS-TDV- 286 (644)
Q Consensus 235 ~---------~g~~~~A~~~~~~~~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~-~~~- 286 (644)
. .++++.+.++|++... | +. .+|. .+...+. ...+++.|...+.++.+. .++
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHh
Confidence 3 3457889999998754 2 11 2332 2222110 011234455555543210 111
Q ss_pred ---C-----------C--C---h---hhHHHHHHHHHccc-------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 006457 287 ---K-----------C--N---A---VTLSAVLLAIAHLG-------VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCK 337 (644)
Q Consensus 287 ---~-----------p--~---~---~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 337 (644)
+ | + . ..|...+.---..+ ..+.+..+|++++..- +.+..+|-..+..+..
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 1 1 0 0 12222222211111 1334567788887753 5577888888888888
Q ss_pred cCCHHHHH-HHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HH
Q 006457 338 CGQVDLAR-KAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGV---------RPN------------YI 392 (644)
Q Consensus 338 ~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~ 392 (644)
.|+.++|. ++|++... | +...|-..+...-+.|++++|.++|+++.+... .|+ ..
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 99999996 99988763 3 556688888888999999999999999986410 142 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG-KLKEAYDLIEGM--KVKADFVVWGSLLGAC 469 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~ 469 (644)
.|...+....+.|.++.|..+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 67777888888899999999999996631 1123445554444445554 589999999876 2233667888888888
Q ss_pred HhcCChhHHHHHHHHhhccCCC---CchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPN---NCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
...|+.+.|..+|+++++..|+ ....+...+..-.+.|..+.+.++.+++.+.-
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8899999999999999998873 44567777777788999999999999998754
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=8.8e-11 Score=105.62 Aligned_cols=167 Identities=16% Similarity=0.037 Sum_probs=140.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA 400 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 400 (644)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788889999999999999999988763 366788899999999999999999999988763 3456677777788
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 478 (644)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999988652 2345778889999999999999999999876 3344 567899999999999999999
Q ss_pred HHHHHHhhccCCCCc
Q 006457 479 EIAAKKLFELEPNNC 493 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~ 493 (644)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=4.7e-10 Score=110.15 Aligned_cols=218 Identities=9% Similarity=0.031 Sum_probs=142.9
Q ss_pred hHHHHHHHHhHHcCCCCCChhhHHHHHHHHH-------ccccH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006457 271 AEALDVFDQMVKSTDVKCNAVTLSAVLLAIA-------HLGVL-------RLGKCIHDQVIKMDLEESVIVGTSIIDMYC 336 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 336 (644)
++|+.+|++.... .+-+...|......+. ..|++ ++|..++++.++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566666666521 1223344444444433 23554 677777777766322344556777777777
Q ss_pred hcCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHH
Q 006457 337 KCGQVDLARKAFNQMKE--K-NVR-SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC-SHAGLVQEGW 411 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 411 (644)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77888888887777654 3 233 67777777778888888888888887643 23334444333322 2368888888
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006457 412 HWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK----VKA--DFVVWGSLLGACRIHKNVDLGEIAAKKL 485 (644)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 485 (644)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++.- ..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888876532 2356778888888888888888888888761 244 3557888888888888888888888888
Q ss_pred hccCCCCc
Q 006457 486 FELEPNNC 493 (644)
Q Consensus 486 ~~~~p~~~ 493 (644)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88888754
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=9.1e-12 Score=122.39 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=121.4
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcC------CCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHh------C
Q 006457 253 DAVTWNSIIAIYAQNGLAAEALDVFDQMVKST------DVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM------D 320 (644)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~ 320 (644)
+..+|..+...|...|++++|+..|+++.+.. ..+.....+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567778888888888888888888876210 11222334455555555556666666655555442 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHH
Q 006457 321 L-EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA------GVRP-NYI 392 (644)
Q Consensus 321 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~ 392 (644)
- +.... +|..+...|...|++++|++.|+++.+. +-.| ...
T Consensus 106 ~~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 11223 3444444555555555555555554432 1112 223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC----------CC
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEF-----NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK----------VK 456 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~ 456 (644)
.+..+...+...|++++|..+++.+.... +..| ....+..+...|.+.|++++|.+.++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44455555555566666665555553310 0011 23345555566666666666666655441 01
Q ss_pred CC-------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 457 AD-------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 457 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+. ...+..+...+...+.+.++...++++....|..+..+..++.+|...|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 112222223334455666667777777777777778888888888888888888888887653
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=4.9e-11 Score=121.29 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-----KN-----VRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-NY 391 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 391 (644)
++..+...|...|++++|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. +-.+ ..
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 334444444455555444444443321 11 124555555566666666666665555432 1001 11
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC----C--CCC-HH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHE---FNI-EPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK----V--KAD-FV 460 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~--~p~-~~ 460 (644)
.++..+...+...|++++|...|+....- .+. +....++..+...|.+.|++++|.+.+++.- . .|. ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 24555555666666666666666655431 112 1124455566666666666666666665541 0 111 11
Q ss_pred HHHHHHHHHHhcCC---hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 461 VWGSLLGACRIHKN---VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 461 ~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.+..+...+...|+ .++|...+++. ...|.....+..++.+|...|++++|.+.+++..
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23444555556666 55555555554 2233344566677777777777777777777664
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=6.4e-10 Score=109.19 Aligned_cols=209 Identities=10% Similarity=0.061 Sum_probs=144.1
Q ss_pred HHHHHHHhcCCC---CCHhHHHHHHHHHH-------HCCCh-------hHHHHHHHHhHHcCCCCCC-hhhHHHHHHHHH
Q 006457 240 DVSRKVFDGMIE---KDAVTWNSIIAIYA-------QNGLA-------AEALDVFDQMVKSTDVKCN-AVTLSAVLLAIA 301 (644)
Q Consensus 240 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~ 301 (644)
++|..+|++... .++..|..++..+. +.|++ ++|..+|++.. . .+.|+ ...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-~-~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-S-TLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-T-TTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-H-HhCcccHHHHHHHHHHHH
Confidence 455566655532 35666666666554 34665 77777777776 2 13443 346667777777
Q ss_pred ccccHHHHHHHHHHHHHhCCCCc-hh-HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHH-HhcCCHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEES-VI-VGTSIIDMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGY-GMHCRAREA 375 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~-~~~g~~~~A 375 (644)
..|+++.|..+++.+++.. |+ .. +|..++..+.+.|++++|..+|++..+. +...|....... ...|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 7777888888877777643 32 32 6777888888888888888888876642 233343332221 236889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 376 LDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP--GVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 376 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
..+|++..+.. +-+...|..++..+...|++++|..+|++......+.| ....|..++..+.+.|++++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888752 33567788888888889999999999999876323455 3668888888888999999999888876
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=1.5e-10 Score=117.74 Aligned_cols=292 Identities=9% Similarity=-0.031 Sum_probs=209.6
Q ss_pred hhcCCCchHHHHHHHHHHHh--CCCCCc--cHHHHHHHHHH--hcCCHHHHH-----------HHHhcCCCC--CHh---
Q 006457 198 CSRVTVNGVTEGAHGFVIKR--GFDSEV--GVGNTLIDAYA--RGGHVDVSR-----------KVFDGMIEK--DAV--- 255 (644)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~li~~~~--~~g~~~~A~-----------~~~~~~~~~--~~~--- 255 (644)
+.+.++++.|.++.+.+.+. .+..|. ..|-.++..-. -.+.++.+. +.++.+... +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678999999999998664 232333 33344433211 122333333 444444211 111
Q ss_pred ---HHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC----hhhHHHHHHHHHccccHHHHHHHHHHHHHhC--CC----
Q 006457 256 ---TWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN----AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMD--LE---- 322 (644)
Q Consensus 256 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~~---- 322 (644)
.|......+...|++++|+..|++..+...-.+| ..++..+...+...|+++.|...+....+.- ..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 2223556778999999999999998722111233 3578888889999999999999999987642 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKA----GV-R 388 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 388 (644)
....+++.+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1245778889999999999999999987653 22 247888999999999999999999998862 33 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-HH
Q 006457 389 PNYITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEPGVEHYGCMVDLLGRAGK---LKEAYDLIEGMKVKADF-VV 461 (644)
Q Consensus 389 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~ 461 (644)
....++..+...+...|++++|..+++....-. +-+.....+..+...|...|+ +++|+.++++.+..|+. ..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345678889999999999999999999885421 111223346778889999999 99999999998655443 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccC
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFELE 489 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 489 (644)
+..+...+...|++++|...+++++++.
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7778899999999999999999998754
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=7.5e-11 Score=128.28 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=126.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCM 433 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 433 (644)
..+|+.|...|.+.|++++|++.|++.++. .| +...+..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 456777777788888888888888887774 44 456777777888888888888888887754 3453 6778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 434 VDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888775 3444 466888888888889999999999999999999988899999999999999999
Q ss_pred HHHHHHHHhh
Q 006457 512 VERTRSLMKN 521 (644)
Q Consensus 512 a~~~~~~m~~ 521 (644)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877643
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.8e-10 Score=103.35 Aligned_cols=160 Identities=14% Similarity=0.008 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 444555566666666666666666543 234455555555556666666666666555432 2234444444444555
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
.|++++|..+++.+... .+.+...|..+...+...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55555555555544331 12234455555566666666666666666
Q ss_pred HhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 484 KLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666543
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=119.15 Aligned_cols=239 Identities=11% Similarity=0.085 Sum_probs=144.2
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---CHhHHHHHHHHHHHCCChhHHHHHHHHhHHc------C
Q 006457 222 EVGVGNTLIDAYARGGHVDVSRKVFDGMIE--------K---DAVTWNSIIAIYAQNGLAAEALDVFDQMVKS------T 284 (644)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 284 (644)
+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++..+. .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999998743 2 3457888999999999999999999998732 1
Q ss_pred CCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 006457 285 DVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM------DL-EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVR 357 (644)
Q Consensus 285 ~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 357 (644)
..+....++..+...+...|++++|...+..+.+. +. +....++..+...|...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------- 166 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ------------------- 166 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-------------------
Confidence 12233556777888888889999998888887653 11 11223344444444444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc------CCC
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKA------GVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEF------NIE 424 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 424 (644)
|++++|+++|+++.+. +..|+ ..++..+...+...|++++|..+++.+.... ...
T Consensus 167 ------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 167 ------------GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4444555444444432 11221 2344455555555555555555555554210 011
Q ss_pred CC-------hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC
Q 006457 425 PG-------VEHYGCMVDLLGRAGKLKEAYDLIEGMK-VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 425 p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
+. ...+..+...+...+.+.+|...+.... ..| +..+|..+..++...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1222333344455566666666666653 223 3457888889999999999999999999988764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=7.3e-09 Score=104.67 Aligned_cols=260 Identities=13% Similarity=0.031 Sum_probs=162.5
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChh----hHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCc----hhHHHHH
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAV----TLSAVLLAIAHLGVLRLGKCIHDQVIKMDL-EES----VIVGTSI 331 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~----~~~~~~l 331 (644)
...+...|++++|...+++.. ...-..+.. ++..+...+...|+++.|...+.+..+... ..+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334555666666666666655 221111111 333444555566677777666666554210 011 1234556
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 006457 332 IDMYCKCGQVDLARKAFNQMKE-------K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVR--P--NYITFVS 396 (644)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 396 (644)
...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6677778888888777766542 1 1234566777788888888888888887764221 1 2345667
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHH
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYG-----CMVDLLGRAGKLKEAYDLIEGMK-VKAD-----FVVWGSL 465 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 465 (644)
+...+...|++++|...++....-..-......+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888888888888888754211111111121 23345778899999998888762 1221 2245667
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCC------CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPN------NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...+...|++++|...++++++..+. ....+..++.+|...|+.++|...++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78888889999999999888775432 123677788889999999999998888754
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=6.7e-10 Score=99.47 Aligned_cols=159 Identities=18% Similarity=0.084 Sum_probs=120.7
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGY 366 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 366 (644)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788889999999999999887654 45677888999999999999999999998763 4677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 456777777888888888888888888887552 122334444444444444444444
Q ss_pred HHHHHh
Q 006457 447 YDLIEG 452 (644)
Q Consensus 447 ~~~~~~ 452 (644)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=7.5e-10 Score=103.37 Aligned_cols=205 Identities=11% Similarity=0.017 Sum_probs=152.4
Q ss_pred CChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHH
Q 006457 288 CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIA 364 (644)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 364 (644)
.|...+......+...|++++|...+...++...+++...+..+...|.+.|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355777778888889999999999999998877546667777788899999999999999988764 3 4567888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhHHHHHH
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRPNY-------ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG---VEHYGCMV 434 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 434 (644)
.|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|+.+. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999988753 2234 456777778888899999999999884 35565 56777777
Q ss_pred HHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 435 DLLGRAGKL--KEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 435 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
..|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.....+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777666543 3322221 12333333332 33456689999999999999999988877776654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=9.8e-10 Score=111.40 Aligned_cols=193 Identities=10% Similarity=0.020 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-----KN-----VRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-NY 391 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 391 (644)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+. |-.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334444445555555554444443321 11 224455555555555555555555554431 1111 12
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM----KV--KAD-FVV 461 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~ 461 (644)
.++..+...+...|++++|...|+....-. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 244455555556666666666665553310 11112444555566666666666666665544 11 111 122
Q ss_pred HHHHHHHHHhcCC---hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 462 WGSLLGACRIHKN---VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 462 ~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..+...+...++ ..+|...+++. ...|.....+..++..|...|++++|.+.+++..
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333344444455 44555555442 1223333455667777777777777777766654
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=4.2e-10 Score=117.56 Aligned_cols=178 Identities=10% Similarity=-0.031 Sum_probs=155.7
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRA-REALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (644)
++++.+.+++... .+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 3677899999999999999 99999999999863 33578899999999999999999999999
Q ss_pred HhhhcCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChhH
Q 006457 417 MGHEFNIEPGVEHYGCMVDLLGRA---------GKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH--------KNVDL 477 (644)
Q Consensus 417 ~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~~ 477 (644)
+.+ +.|+...+..+...|... |++++|++.|++. ...| +...|..+..++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 954 568888999999999999 9999999999987 3344 577999999999988 99999
Q ss_pred HHHHHHHhhccCC---CCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 478 GEIAAKKLFELEP---NNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 478 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999998764
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=9.1e-09 Score=104.22 Aligned_cols=305 Identities=11% Similarity=-0.022 Sum_probs=213.0
Q ss_pred ccCCHhhHHHHHHHh--hcCCCchHHHHHHHHHHHhC--CCCC--ccHHHHHHHHH-----HhcCCHH---------HHH
Q 006457 184 VFVDSVAIASVLSAC--SRVTVNGVTEGAHGFVIKRG--FDSE--VGVGNTLIDAY-----ARGGHVD---------VSR 243 (644)
Q Consensus 184 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~~~~--~~~~~~li~~~-----~~~g~~~---------~A~ 243 (644)
+.|+...-..+-..+ ...++++.|.++.+.+.+.. +..| ...|-.|+..- ....... +..
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 344444444454554 67899999999999886642 3233 33344444431 1111111 333
Q ss_pred HHHhcCCCC-C-H---hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCC----hhhHHHHHHHHHccccHHHHHHHHH
Q 006457 244 KVFDGMIEK-D-A---VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCN----AVTLSAVLLAIAHLGVLRLGKCIHD 314 (644)
Q Consensus 244 ~~~~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~ 314 (644)
+-.+....+ + . ..|......+...|++++|+..|++..+...-.++ ..++..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 333322222 1 1 12333455678899999999999998722222233 3467788888999999999999999
Q ss_pred HHHHhC--C---C-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 315 QVIKMD--L---E-ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 315 ~~~~~~--~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
...+.. . . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 887631 1 1 1245678899999999999999999987653 22 347888999999999999999999
Q ss_pred HHHHHc----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCC---HHHHHHH
Q 006457 380 YKMIKA----GVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI---EPGVEHYGCMVDLLGRAGK---LKEAYDL 449 (644)
Q Consensus 380 ~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~ 449 (644)
++..+. +.+....++..+...+.+.|++++|..+++....-..- +.....+..+...|...|+ +++|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998761 22334667888899999999999999999998664322 2224456777788888898 9999999
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 450 IEGMKVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 450 ~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
+++.+..|+. ..+..+...+...|++++|...++++++.
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9987654443 35667889999999999999999998764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=7e-10 Score=103.56 Aligned_cols=184 Identities=13% Similarity=-0.062 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE----KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSA 400 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 400 (644)
..+..+...|.+.|++++|...|++..+ ++...|..+..+|...|++++|+..|++..+. .| +...+..+...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444445555555555555555554331 33444444555555555555555555555542 22 23344444455
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCC-h-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEPG-V-------EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD---FVVWGSLLGA 468 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 468 (644)
+...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555554331 221 2 23444444444455555555554443 23333 2233333333
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 322 22333344444443332222222 12233444777777777664
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=1.4e-08 Score=102.53 Aligned_cols=259 Identities=10% Similarity=0.001 Sum_probs=154.6
Q ss_pred HHHHhcCCHHHHHHHHhcC----CCCCH----hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh----hhHHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGM----IEKDA----VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA----VTLSAVLL 298 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~ 298 (644)
..+...|++++|...+++. +..+. .+++.+...+...|++++|.+.+++......-.++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444566666666665543 11122 134455556666677777766666654211111111 22344555
Q ss_pred HHHccccHHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------ChhhHHHHH
Q 006457 299 AIAHLGVLRLGKCIHDQVIKM----DLE--E-SVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K------NVRSWTAMI 363 (644)
Q Consensus 299 a~~~~~~~~~a~~i~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 363 (644)
.+...|++++|...++...+. +.. | ....+..+...|...|++++|...+++... + ...+|..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566667777777776666542 211 2 233455677777788888888887776432 1 124566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHccCCHHHHHHHHHHHhhhcCCCC---ChhHHHHHH
Q 006457 364 AGYGMHCRAREALDLFYKMIKAGVRPN--YITFV----SVLSACSHAGLVQEGWHWLNTMGHEFNIEP---GVEHYGCMV 434 (644)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li 434 (644)
..+...|++++|...+++.....-.++ ..... ..+..+...|++++|..+++..... ...+ ....+..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHH
Confidence 788888888888888888765321211 11111 2233466888999998888877431 1111 123456777
Q ss_pred HHHhhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 435 DLLGRAGKLKEAYDLIEGM-------KVKADFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
..+...|++++|.+.+++. +..++.. .+..+..++...|+.++|...+++++++.+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 8888889999988888765 1111222 555566777888999999999998887654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=6.9e-10 Score=107.00 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE-------K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKA------GV 387 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 387 (644)
..++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455556666666666666666554431 1 2345666667777777777777777766643 11
Q ss_pred CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC------
Q 006457 388 RP-NYITFVSVLSACSHAGLVQEGWHWLNTMGHEF-----NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK------ 454 (644)
Q Consensus 388 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~------ 454 (644)
.| ...++..+...+...|++++|..+++.+.... +-.| ....+..+...|.+.|++++|.+.++++-
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 34466667777777777777777777775420 1122 24566777777888888888877776551
Q ss_pred ----CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 455 ----VKAD-FVVWGSLLGACRIHKN------VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 455 ----~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..+. ...|..+.......+. +..+...++......|..+..+..++.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2233333333333222 23333333333344566677888899999999999999999988764
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.02 E-value=2.4e-09 Score=116.45 Aligned_cols=163 Identities=13% Similarity=0.100 Sum_probs=132.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVL 398 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 398 (644)
.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .| +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3456778888888888888888888887653 35678888888899999999999999988875 45 467888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 006457 399 SACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 399 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 475 (644)
.++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. ...| +...|..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 888999999999999988855 345 4778888999999999999999998876 4455 466888888999999999
Q ss_pred hHHHHHHHHhhccCC
Q 006457 476 DLGEIAAKKLFELEP 490 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p 490 (644)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999998887543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=7.1e-09 Score=100.78 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=145.6
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 375 (644)
++++|...+... ...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888877765 4467788999999988876643 12 45889999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHH
Q 006457 376 LDLFYKMIKAGV---RPN--YITFVSVLSACSHA-GLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 376 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 445 (644)
+..|++..+... .+. ..++..+...+... |++++|+..|++..+-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998875311 111 35788888899996 9999999999988652111111 4568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh-----HHHHHHHHh--hcCCc
Q 006457 446 AYDLIEGM-KVKAD---F-----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY-----HVLLSNIYA--NAGRW 509 (644)
Q Consensus 446 A~~~~~~~-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 509 (644)
|++.|++. ...|+ . ..|..+..++...|+++.|...+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999976 22232 1 156777788899999999999999999999976543 344555554 56778
Q ss_pred hHHHHHHHHHh
Q 006457 510 EDVERTRSLMK 520 (644)
Q Consensus 510 ~~a~~~~~~m~ 520 (644)
++|.+.++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888775543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=1.6e-08 Score=98.17 Aligned_cols=171 Identities=8% Similarity=-0.089 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-CC----
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMH-CRAREALDLFYKMIKAGVR-PN---- 390 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~---- 390 (644)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3455566666666666666666655432 11 24677788888886 9999999999887763110 01
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV-----EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFV---- 460 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~---- 460 (644)
..++..+...+...|++++|+..|+.+.....-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3467788888999999999999999886521111121 15677788888999999999999886 3445322
Q ss_pred --HHHHHHHHHH--hcCChhHHHHHHHHhhccCCCCchhH
Q 006457 461 --VWGSLLGACR--IHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 461 --~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
.+..++.++. ..+++++|...++++.+++|......
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2344555554 45678888888888888888654333
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=3.9e-08 Score=93.77 Aligned_cols=205 Identities=10% Similarity=-0.009 Sum_probs=136.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-N---VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPN-YITF 394 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 394 (644)
.+...+-.+...+.+.|++++|...|+++.+ | + ...|..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3445555667777778888888888887764 2 2 34667777777888888888888888777421 112 3445
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 006457 395 VSVLSACSH--------AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSL 465 (644)
Q Consensus 395 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 465 (644)
..+..++.. .|++++|...|+.+.+. .|+ ......+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666666 77777787777777553 232 22222221111110111 1124567
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHHHhhc----------CCchHHHHHHHHHhhCCCcCCCceeE
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNIYANA----------GRWEDVERTRSLMKNRRLAKTPGFSL 532 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~ 532 (644)
...+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++.+.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 788899999999999999999999985 45788899999877 89999999999987643
Q ss_pred EEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 006457 533 VELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQE 568 (644)
Q Consensus 533 ~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~ 568 (644)
..+|...+....+.++...+.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2245556666666666666654
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=3.2e-08 Score=95.18 Aligned_cols=162 Identities=11% Similarity=-0.006 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE-------K----NVRSWTAMIAGYGMHCRAREALDLFYKMIKA------GVRP 389 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 389 (644)
++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++..+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444555555555555555555554331 1 1345666777777777777777777777653 1123
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc------CCCC-ChhHHHHHHHHHhhc------CCHHHHHHHHHhCC-
Q 006457 390 -NYITFVSVLSACSHAGLVQEGWHWLNTMGHEF------NIEP-GVEHYGCMVDLLGRA------GKLKEAYDLIEGMK- 454 (644)
Q Consensus 390 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~------g~~~~A~~~~~~~~- 454 (644)
...++..+...+...|++++|..+++.+.+.. ...+ ....+..+...+... ..+.++...++...
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 24567777778888888888888887775420 1122 233333333333332 23445555555553
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 006457 455 VKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFEL 488 (644)
Q Consensus 455 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 488 (644)
..| ...++..+...+...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3447788889999999999999999998775
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=1.4e-07 Score=90.04 Aligned_cols=243 Identities=8% Similarity=-0.010 Sum_probs=161.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEK-DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
.-..-.|.+..++.-...+... ....-.-+.++|...|++... ..-.|....+..+.. |...+ +
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 3344578888877766655332 223333455778888876531 112233323332222 22222 5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 310 KCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-----NVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
...+++.+..+ .++......+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666666554 444555567888899999999999999987433 345677788899999999999999999987
Q ss_pred cCCCC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 006457 385 AGVRP-----NYITFVSVLSAC--SHAG--LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMK- 454 (644)
Q Consensus 385 ~g~~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 454 (644)
. .| +..+...+..++ ...| ++++|..+|+++.. -.|+......+..++.+.|++++|.+.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 67 366666777663 3334 89999999999854 34553333444558889999999999987642
Q ss_pred C----------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhH
Q 006457 455 V----------KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 455 ~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
. .| |+.+...++......|+ .|.++++++.+..|+++...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 24 45566566656666676 78899999999999986543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=3.2e-08 Score=82.93 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLL 437 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (644)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+++.+... .+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCC------------
Confidence 34555555666666666666666665542 223444555555555555555555555555331 111
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHH
Q 006457 438 GRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (644)
+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 233344444444445555555555555555555555555555555555555555555555
Q ss_pred HHh
Q 006457 518 LMK 520 (644)
Q Consensus 518 ~m~ 520 (644)
.+.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=2.7e-08 Score=94.91 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=141.6
Q ss_pred CChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhh
Q 006457 288 CNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEES---VIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN----VRS 358 (644)
Q Consensus 288 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 358 (644)
.+...+-.....+...|++++|...++.+++.. +.+ ...+..+...|.+.|++++|...|++..+ |+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345667777788889999999999999998865 223 56778899999999999999999998864 32 346
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhH
Q 006457 359 WTAMIAGYGM--------HCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 359 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
+..+..++.. .|++++|+..|++..+. .|+. .....+ ..+...... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999985 3432 222111 111111110 0122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHhhccCCCCch
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIH----------KNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778888899999999988876 22333 34666677777655 8889999999999999999864
Q ss_pred h---HHHHHHHHhhcCCch
Q 006457 495 Y---HVLLSNIYANAGRWE 510 (644)
Q Consensus 495 ~---~~~l~~~~~~~g~~~ 510 (644)
. ...+..++...|+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 344444444444433
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1.6e-09 Score=93.51 Aligned_cols=140 Identities=7% Similarity=-0.083 Sum_probs=101.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcC
Q 006457 364 AGYGMHCRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAG 441 (644)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 441 (644)
..+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|++.|++..+ +.| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 344556677777777776654 2332 33455667777778888888888877754 334 4677788888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 442 KLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEI-AAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 442 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
++++|...|++. ...| +...|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888775 3445 46688888888999998876655 4689999999999999999988888775
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=5.6e-08 Score=106.22 Aligned_cols=168 Identities=7% Similarity=-0.120 Sum_probs=134.4
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 336 CKCGQVDLARKAFNQMK-----------EKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 336 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888888775 2355678888888999999999999999988753 33567788888888899
Q ss_pred CCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIA 481 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 481 (644)
|++++|...|+++.+ +.| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998865 345 47778888889999999998 8888876 3344 566888888999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 482 AKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988899999998877665
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=2.8e-08 Score=83.35 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.|..+...+.+.|++++|.++++++ . .+.+...|..+...+...|++++|...++++++..|.++..+..++.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 5667788888889999998888876 2 2236678888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 006457 507 GRWEDVERTRSLMKNRR 523 (644)
Q Consensus 507 g~~~~a~~~~~~m~~~~ 523 (644)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987654
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=1e-07 Score=88.55 Aligned_cols=179 Identities=9% Similarity=-0.035 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHH
Q 006457 326 IVGTSIIDMYCKCGQVDLARKAFNQMKE--KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNY----ITFV 395 (644)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 395 (644)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3445566677888888888888887763 32 2357777788888888888888888888743 322 1333
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 006457 396 SVLSACSH------------------AGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGMKVK 456 (644)
Q Consensus 396 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 456 (644)
.+..++.. .|++++|...|+.+.+. .|+ ...+.++..+ +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34566666666665432 232 1122111110 0000000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc---hhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 457 ADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC---GYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455677899999999999999999999876 5688999999999999999999999987664
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.1e-07 Score=90.70 Aligned_cols=240 Identities=8% Similarity=-0.016 Sum_probs=165.5
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ 340 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 340 (644)
|+-..-.|.+..++.-...+. ...+ ......+.+++...|+.... ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc-
Confidence 344455788888887433331 2222 23334455667666665431 11123333333333 333332
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRP-NYITFVSVLSACSHAGLVQEGWHWLNT 416 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 416 (644)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6777877653 455566788889999999999999999987655322 455777888899999999999999999
Q ss_pred HhhhcCCCC-----ChhHHHHHHHH--HhhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 417 MGHEFNIEP-----GVEHYGCMVDL--LGRAG--KLKEAYDLIEGMK-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 417 ~~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
|.+ ..| +..+...|..+ ....| ++++|..+|+++. ..|+..+-..++.++...|++++|+..++.+.
T Consensus 162 ~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 954 456 35555556555 33334 9999999999984 33553344455568899999999999999888
Q ss_pred cc----------CCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 487 EL----------EPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 487 ~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+. +|+++.+...++.+....|+ +|.+++.++++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 86 58899999888888888897 8999999998643
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=5.8e-08 Score=93.96 Aligned_cols=174 Identities=8% Similarity=-0.070 Sum_probs=133.0
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC
Q 006457 343 LARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFN 422 (644)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 422 (644)
.....+......+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---
Confidence 33344444443445566677778888899999999999988753 33566788888889999999999999988844
Q ss_pred CCCChhHHHHHH-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC--chhHH
Q 006457 423 IEPGVEHYGCMV-DLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN--CGYHV 497 (644)
Q Consensus 423 ~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 497 (644)
..|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ...+.
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 356544333332 3366778888888888775 3334 57788999999999999999999999999999988 78899
Q ss_pred HHHHHHhhcCCchHHHHHHHHHh
Q 006457 498 LLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988887653
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=4.4e-06 Score=87.05 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=96.5
Q ss_pred hHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHH
Q 006457 271 AEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLA-RKAFN 349 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 349 (644)
+.+..+|+++. . ..+.+...|...+.-+...|+++.|..++++.++. +.+...+. .|+...+.++. ..+.+
T Consensus 196 ~Rv~~~ye~al-~-~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYIL-D-SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHH-H-HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHH-H-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence 34566777776 2 22344555666666666777888888888888777 33333332 22222111111 11111
Q ss_pred hcC--C-------C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHH
Q 006457 350 QMK--E-------K---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACS-HAGLVQEGWHWLNT 416 (644)
Q Consensus 350 ~~~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~ 416 (644)
... . + ....|-..+....+.+..+.|..+|++. +.. .++...|......-. ..++++.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110 0 0 1123444444444455566666666665 211 122223321111111 12246666666666
Q ss_pred HhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 417 MGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 417 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
..+.++ -+...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..
T Consensus 346 al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 655332 123344445555556666666666666652 134455555555555555555555555444
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=3.2e-07 Score=84.16 Aligned_cols=162 Identities=7% Similarity=-0.126 Sum_probs=117.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHhhhcCCCCChhH
Q 006457 354 KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG----LVQEGWHWLNTMGHEFNIEPGVEH 429 (644)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 429 (644)
.+..++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|+..... -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355666667777777777777777777777655 44555555555665 5 778888888877441 25666
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHH
Q 006457 430 YGCMVDLLGR----AGKLKEAYDLIEGMK-VKAD---FVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 430 ~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
+..|..+|.. .+++++|.+.|++.- ..|. +..+..|...|.. .++.++|...++++.++ |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6777777766 778888888888763 3332 6777777777777 77888999999998888 66677888
Q ss_pred HHHHHHhhc-C-----CchHHHHHHHHHhhCCC
Q 006457 498 LLSNIYANA-G-----RWEDVERTRSLMKNRRL 524 (644)
Q Consensus 498 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 524 (644)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888754 3 88999999988877653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=7.3e-08 Score=85.61 Aligned_cols=155 Identities=7% Similarity=-0.036 Sum_probs=89.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-Hhhc
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL-LGRA 440 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 440 (644)
+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+.. ..|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHhh
Confidence 3344444455555555555444321 11333444444455555555555555554422 12222222111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC--chhHHHHHHHHhhcCCchHHHHHH
Q 006457 441 GKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN--CGYHVLLSNIYANAGRWEDVERTR 516 (644)
Q Consensus 441 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~ 516 (644)
+...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222345555544 2334 46788888888888999999999999999988864 558888899999999999998888
Q ss_pred HHHh
Q 006457 517 SLMK 520 (644)
Q Consensus 517 ~~m~ 520 (644)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=1.1e-08 Score=88.19 Aligned_cols=121 Identities=12% Similarity=-0.036 Sum_probs=100.5
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKN 474 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 474 (644)
...+...|++++|+..++... ...|+ ...+-.+...|.+.|++++|++.|++. ...| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344556788999999998873 34453 455667899999999999999999987 4445 67799999999999999
Q ss_pred hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHH-HHHHhh
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERT-RSLMKN 521 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 521 (644)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988775 466654
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=7.3e-08 Score=82.74 Aligned_cols=101 Identities=10% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 422 NIEPG-VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 422 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45553 667788888999999999999999987 3444 67799999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=3.8e-07 Score=99.65 Aligned_cols=189 Identities=11% Similarity=-0.017 Sum_probs=146.8
Q ss_pred HccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhc
Q 006457 301 AHLGVLRLGKCIHDQVI--------KMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMH 369 (644)
Q Consensus 301 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 369 (644)
...|++++|...++.+. +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 32 245667888889999999999999999998774 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYD 448 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 448 (644)
|++++|++.|++..+.. +-+...+..+..++...|++++ ...|+++.+ +.| +...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999853 3356778888999999999999 999999865 344 57789999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHhhccCCCCchh
Q 006457 449 LIEGM-KVKAD-FVVWGSLLGACRIHKN-----VDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 449 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.|+++ ...|+ ...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99987 46676 4577777777766555 344445555555555554443
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=9.8e-08 Score=102.34 Aligned_cols=160 Identities=8% Similarity=-0.062 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006457 338 CGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWL 414 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 414 (644)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998774 356789999999999999999999999998853 335778889999999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHhhccC
Q 006457 415 NTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH---KNVDLGEIAAKKLFELE 489 (644)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 489 (644)
++..+. -+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999663 2335788999999999999999999999986 3334 567888899999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 006457 490 PNNCGYHVLLS 500 (644)
Q Consensus 490 p~~~~~~~~l~ 500 (644)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=3.2e-07 Score=89.70 Aligned_cols=219 Identities=14% Similarity=0.063 Sum_probs=150.5
Q ss_pred CCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006457 267 NGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARK 346 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 346 (644)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887752211 11 0 11136677776666543 456778889888888
Q ss_pred HHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHccCCHHHHHH
Q 006457 347 AFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV---RPN--YITFVSVLSACSHAGLVQEGWH 412 (644)
Q Consensus 347 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 412 (644)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876543 12 34788888899999999999999998765311 122 3567778888888 99999999
Q ss_pred HHHHHhhhcC---CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHH
Q 006457 413 WLNTMGHEFN---IEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK-V---KAD----FVVWGSLLGACRIHKNVDLGEI 480 (644)
Q Consensus 413 ~~~~~~~~~~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 480 (644)
.|++...-.. -.+ ...++..+...|.+.|++++|++.|++.- . .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998864211 111 14678888999999999999999998761 1 112 2256666677778899999999
Q ss_pred HHHHhhccCCCCchh-----HHHHHHHHhhcCCchHHHH
Q 006457 481 AAKKLFELEPNNCGY-----HVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 481 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 514 (644)
.+++++ +.|..... ...++..| ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 98875432 33445544 5677666655
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=2.4e-07 Score=84.81 Aligned_cols=127 Identities=6% Similarity=-0.017 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhh
Q 006457 361 AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGR 439 (644)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 439 (644)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ +.| +...+..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence 37888999999999999999998853 33677888888899999999999999999865 345 47788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 440 AGK--LKEAYDLIEGMKVKADFV--VWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 440 ~g~--~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.|. .+.+...++... .|+.. .|..+..++...|++++|+..++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566666653 34433 44555666777899999999999999999974
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=2.2e-07 Score=99.61 Aligned_cols=147 Identities=9% Similarity=-0.078 Sum_probs=105.5
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887754 44577888888999999999999999988764 35678888889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRA---GKLKEAYDLIEGM 453 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 453 (644)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988863 345678888888999999999999999988653 223577888888899888 9999999988876
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=7.8e-08 Score=82.56 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=86.9
Q ss_pred CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 422 NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 422 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 4566777888899999999999999876 3334 67788899999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhC
Q 006457 499 LSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=5.9e-06 Score=79.60 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC-----
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQ--EGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGK----- 442 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 442 (644)
+++++++++++++.+.. +-|...|..-.....+.|.++ +++++++.+... -.-|-..|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 34445555555554432 224444444444444444444 455555554331 11233334333333333333
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHhhccC---CCCchhHHHHHHHHhhcCCchHHHHH
Q 006457 443 -LKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNV-DLGEIAAKKLFELE---PNNCGYHVLLSNIYANAGRWEDVERT 515 (644)
Q Consensus 443 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (644)
++++++.++++ ...| |...|+-+...+...|+. +.....++++.+++ |.++.+...++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555443 1122 455666555555555542 23444555555554 55556666666666666666666666
Q ss_pred HHHHhh
Q 006457 516 RSLMKN 521 (644)
Q Consensus 516 ~~~m~~ 521 (644)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666653
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=5.7e-06 Score=86.16 Aligned_cols=368 Identities=9% Similarity=-0.018 Sum_probs=205.0
Q ss_pred hcC-CchHHHHHHhhcCCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCC-cHHHHH
Q 006457 18 KHS-TNTNLTTLFNKYVDK-NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHD-LHSGKQ 94 (644)
Q Consensus 18 ~~~-~~~~A~~~f~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~ 94 (644)
+.| +++.|+.+|+.+... |. |+++.+..+|++... ..|+...|..-++...+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 366666666665322 22 678888888888776 34677777777776665542 345667
Q ss_pred HHHHHHHh-CCCC-ChhHHHHHHHHHHh----CCChHHHHHHHhhCCCCCCCeecHHHHHHHHHh---CCChhHHHHHHH
Q 006457 95 AHQQAFIF-GFHR-DVFVSSALIDMYSK----CGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQ---NDNAREALLLFK 165 (644)
Q Consensus 95 ~~~~~~~~-g~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 165 (644)
+|+.++.. |..+ +..+|...+..+.. .|+++.+.++|++.... |. ..+..+-..|.. ......+..++.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 77777764 4333 55677777766542 35677788888877553 21 112222222211 111122222222
Q ss_pred HhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcC--C-----
Q 006457 166 EFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGG--H----- 238 (644)
Q Consensus 166 ~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~----- 238 (644)
+.. +.+..|+.++..+.+.--..+...|...++.-...+ -
T Consensus 148 ~~~---------------------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 148 DTL---------------------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPH 194 (493)
T ss_dssp HHH---------------------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred HHh---------------------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhh
Confidence 211 112223333332221100012223444333322110 0
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHH
Q 006457 239 VDVSRKVFDGMI---EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQ 315 (644)
Q Consensus 239 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 315 (644)
.+.+..+|+++. ..+...|-..+.-+.+.|+.++|..+|.+.. .. |....+.. +++.....+. +++.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~---P~~~~l~~---~y~~~~e~~~---~~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM---SDGMFLSL---YYGLVMDEEA---VYGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH---CCSSHHHH---HHHHHTTCTH---HHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC---CCcHHHHH---HHHhhcchhH---HHHH
Confidence 234555666653 2357788888888889999999999999988 33 55443322 1222111111 1222
Q ss_pred HHHhC---------C---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhhHHHHHHHH-HhcCCHHHHHHHHH
Q 006457 316 VIKMD---------L---EESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKN--VRSWTAMIAGY-GMHCRAREALDLFY 380 (644)
Q Consensus 316 ~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~-~~~g~~~~A~~~~~ 380 (644)
+.+.- . .....+|...+..+.+.+.++.|+.+|++...|+ ...|-.....- ...++.+.|..+|+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 22210 0 1123456667777777889999999999884343 22332211111 12346999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 381 KMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 381 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
...+.- +-+...+...+.-..+.|+.+.|..+|+.+. .....|...++.-.+.|+.+.+.++++++
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 998753 2234445556666778899999999999872 25788888888888889999999888765
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=1.7e-06 Score=79.23 Aligned_cols=145 Identities=10% Similarity=-0.042 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLV 407 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 407 (644)
+..+...+...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 33456667778888888888888777777778888888888888888888888877653 33556677777777777777
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 408 QEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 408 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
++|...|+.+.+...-.+... +...| +...| ....|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777754211111000 00000 01222 23567777788888888888888888888
Q ss_pred ccCCCC
Q 006457 487 ELEPNN 492 (644)
Q Consensus 487 ~~~p~~ 492 (644)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888875
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=7.4e-07 Score=86.43 Aligned_cols=163 Identities=11% Similarity=-0.024 Sum_probs=119.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC--CCC--hh
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN-Y----ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNI--EPG--VE 428 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 428 (644)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++.......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566778888999999999888876432211 1 12334555677888999999999887542111 111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC------Cc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGMK----VKAD-----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN------NC 493 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 493 (644)
+|+.+...|...|++++|...|+++- ..|+ ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999887751 1222 257888889999999999999999999886432 15
Q ss_pred hhHHHHHHHHhhcCCchHH-HHHHHHHh
Q 006457 494 GYHVLLSNIYANAGRWEDV-ERTRSLMK 520 (644)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 520 (644)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77677654
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.6e-07 Score=78.07 Aligned_cols=94 Identities=6% Similarity=-0.004 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh
Q 006457 428 EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN 505 (644)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 505 (644)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555556666666666666666554 2223 455666666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHhh
Q 006457 506 AGRWEDVERTRSLMKN 521 (644)
Q Consensus 506 ~g~~~~a~~~~~~m~~ 521 (644)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666553
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=3.1e-06 Score=82.03 Aligned_cols=159 Identities=11% Similarity=-0.011 Sum_probs=114.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHH
Q 006457 362 MIAGYGMHCRAREALDLFYKMIKAG-VRPNYI----TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGC 432 (644)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 432 (644)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122321 2334556666777888888888888652111222 336788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMK-------V-KAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHV 497 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (644)
+...|...|++++|...|+++- . .|. ..++..+...|...|++++|...+++++++.+.. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888887651 1 111 2377888899999999999999999998865332 56889
Q ss_pred HHHHHHhhcCC-chHHHHHHHHHh
Q 006457 498 LLSNIYANAGR-WEDVERTRSLMK 520 (644)
Q Consensus 498 ~l~~~~~~~g~-~~~a~~~~~~m~ 520 (644)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599999888765
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=6e-07 Score=82.28 Aligned_cols=125 Identities=11% Similarity=-0.006 Sum_probs=95.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRI 471 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 471 (644)
+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.|++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334455566677777777777655 2456677777777777777777777777765 22 2356678888888888
Q ss_pred cCChhHHHHHHHHhhccCCCCc----------------hhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 472 HKNVDLGEIAAKKLFELEPNNC----------------GYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 472 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
.|++++|...+++++++.|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888877766 899999999999999999999999988654
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=1.7e-06 Score=83.56 Aligned_cols=156 Identities=5% Similarity=-0.016 Sum_probs=74.5
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHH-HHHHHHHhcC
Q 006457 294 SAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNVRSWT-AMIAGYGMHC 370 (644)
Q Consensus 294 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g 370 (644)
..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+..... .....+...+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 333444444455555555555544433 23344455555566666666666666665543 3222111 1112244444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.++|...+
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 5555555555555532 223445555555555555565555555555442111111344555555555555555555444
Q ss_pred H
Q 006457 451 E 451 (644)
Q Consensus 451 ~ 451 (644)
+
T Consensus 279 r 279 (287)
T 3qou_A 279 R 279 (287)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.59 E-value=6.3e-07 Score=83.09 Aligned_cols=184 Identities=16% Similarity=0.052 Sum_probs=130.3
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hhHHH
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE--SVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KNV----RSWTA 361 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~ 361 (644)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777889999999999999999864322 235677789999999999999999999764 332 14555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcC
Q 006457 362 MIAGYGM------------------HCRAREALDLFYKMIKAGVRPNYI-TFVSVLSACSHAGLVQEGWHWLNTMGHEFN 422 (644)
Q Consensus 362 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 422 (644)
+..++.. .|+.++|+..|+++.+. .|+.. ....... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555554 57899999999999874 45533 2211110 0 0111111
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch
Q 006457 423 IEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG 494 (644)
Q Consensus 423 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 494 (644)
......+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++++....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112235677889999999999999886 233432 46788889999999999999999999998887654
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.58 E-value=6.5e-07 Score=74.29 Aligned_cols=114 Identities=10% Similarity=0.011 Sum_probs=87.3
Q ss_pred CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 006457 387 VRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWG 463 (644)
Q Consensus 387 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 463 (644)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34432 35566677777888888888888877542 2235677777888888888888888888775 3334 567889
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 464 SLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 464 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+..++...|++++|...++++++++|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998888877664
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=2.5e-05 Score=75.16 Aligned_cols=224 Identities=8% Similarity=-0.016 Sum_probs=151.8
Q ss_pred hHHHHHHHHhHHcCCCCCCh-hhHHHHHHHHHccc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---CC
Q 006457 271 AEALDVFDQMVKSTDVKCNA-VTLSAVLLAIAHLG--VLRLGKCIHDQVIKMDLEESVIVGTSIIDMY----CKC---GQ 340 (644)
Q Consensus 271 ~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 340 (644)
++|++++..+. .+.|+. ..++.--..+...+ .++++...++.++... +.+..+|+.--..+ .+. ++
T Consensus 50 ~~aL~~t~~~L---~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGI---NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHH---HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHH---HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 45555555554 223332 23444444444455 5666666666665544 23333343332222 333 67
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------HHH
Q 006457 341 VDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAR--EALDLFYKMIKAGVRPNYITFVSVLSACSHAGL------VQE 409 (644)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 409 (644)
++++.++++.+.+ +|..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888887764 46678888777778888877 8999999999864 3466777766666677766 888
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006457 410 GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE-AYDLIEGMK-V----KADFVVWGSLLGACRIHKNVDLGEIAAK 483 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 483 (644)
++++++.++.. -+-|...|+-+...+.+.|+..+ +.++..+.- . ..+...+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99998888652 33467888888888888888544 555766652 1 2367788889999999999999999999
Q ss_pred Hhhc-cCCCCchhHHHHHH
Q 006457 484 KLFE-LEPNNCGYHVLLSN 501 (644)
Q Consensus 484 ~~~~-~~p~~~~~~~~l~~ 501 (644)
.+.+ .+|-....+...++
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9996 79988777765544
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.57 E-value=7.1e-07 Score=79.13 Aligned_cols=155 Identities=10% Similarity=-0.037 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSA-CSH 403 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 403 (644)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34456667778888888888887764 35667888888888888888888888877653 3343322221111 112
Q ss_pred cCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD---FVVWGSLLGACRIHKNVDLG 478 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a 478 (644)
.+...+|...++...+ ..| +...+..+...|...|++++|...|+++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222346777777754 345 4777888888888889999988888875 44443 45788888888888888888
Q ss_pred HHHHHHhhc
Q 006457 479 EIAAKKLFE 487 (644)
Q Consensus 479 ~~~~~~~~~ 487 (644)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887653
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.56 E-value=2.2e-06 Score=78.32 Aligned_cols=135 Identities=10% Similarity=-0.065 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAG 405 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 405 (644)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3466677777777777777776552 355677777777777777777777777777642 224556666666665444
Q ss_pred C--HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 006457 406 L--VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLG 467 (644)
Q Consensus 406 ~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 467 (644)
. .+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3 233444444431 22222223334455566677777777777765 56677655544443
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=6.6e-07 Score=76.09 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=84.3
Q ss_pred CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHH
Q 006457 423 IEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 423 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 444 3455666777888899999999998876 2334 677888889999999999999999999999999999999999
Q ss_pred HHHHhhcCCchHHHHHHHHHhhC
Q 006457 500 SNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=3.1e-06 Score=77.55 Aligned_cols=172 Identities=10% Similarity=-0.098 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 006457 309 GKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEK-NVRSWTAMIAGYGMHC----RAREALDLFYKMI 383 (644)
Q Consensus 309 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 383 (644)
|...+....+.| +...+..|..+|...+++++|...|++..+. +...+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 4556666777777788888888888776543 56677777777777 5 7888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhh----cCCHHHHHHHHHh
Q 006457 384 KAGVRPNYITFVSVLSACSH----AGLVQEGWHWLNTMGHEFNIEPG---VEHYGCMVDLLGR----AGKLKEAYDLIEG 452 (644)
Q Consensus 384 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 452 (644)
+.| +...+..|...+.. .+++++|..+|+...+ ..|+ ...+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 45566667777766 7888999999888843 3443 6778888888887 7789999999887
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhccCC
Q 006457 453 MK-VKADFVVWGSLLGACRIH-K-----NVDLGEIAAKKLFELEP 490 (644)
Q Consensus 453 ~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 490 (644)
.- ..++...+..|...|... | |.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 62 224566777777777543 2 88999999998887754
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=1.1e-06 Score=72.31 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 006457 392 ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGAC 469 (644)
Q Consensus 392 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~ 469 (644)
..+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|..+++++ . .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666442 1224555666666677777777777766655 1 223566777888888
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcC
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAG 507 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 507 (644)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888877766543
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=2.6e-07 Score=89.01 Aligned_cols=186 Identities=9% Similarity=-0.033 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE--K-NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
...+..+...|.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455556666666777777666665542 2 45566666777777777777777777766532 22455666666677
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 006457 402 SHAGLVQEGWHWLNTMGHEFNIEPG------VEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 475 (644)
...|++++|...|+...+. .|+ ...+..+ ...+...+.. .......++......+ ..+ ..|+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 7777777777777666431 121 1111111 1112212221 1222233344443333 332 26888
Q ss_pred hHHHHHHHHhhccCCCCchhHHHHHHHHhhc-CCchHHHHHHHHHhhC
Q 006457 476 DLGEIAAKKLFELEPNNCGYHVLLSNIYANA-GRWEDVERTRSLMKNR 522 (644)
Q Consensus 476 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 522 (644)
++|.+.++++++++|++......+...+.+. +++++|.++|....+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998877777777777776 7789999999888654
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.52 E-value=1.1e-06 Score=76.58 Aligned_cols=126 Identities=6% Similarity=-0.072 Sum_probs=87.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555556666666666666666442 1224556666666777777777777776654 2223 5667888888888
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHH--HhhcCCchHHHHHHHHHh
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI--YANAGRWEDVERTRSLMK 520 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 520 (644)
..|++++|...+++++++.|.++..+..+..+ +...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999999999999888777544444 778899999998887764
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=6.1e-07 Score=87.68 Aligned_cols=197 Identities=9% Similarity=-0.037 Sum_probs=149.7
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 302 HLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 302 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
..|++++|.+++++..+.... . .+...+++++|...|.+. ...|...|++++|.+.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357888999999888764321 1 011157899998887763 5678889999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 382 MIKA----GVRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 382 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
..+. |-.+. ..+|..+...|...|++++|+..|++...-+ |-.+ ...++..+..+|.+ |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8753 21111 3478888899999999999999999875421 1111 24678888999998 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc------hhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 453 M-KVKA---D----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC------GYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 453 ~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
. .+.| + ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788888999999999999999999999866543 3667778888899999999999998
Q ss_pred Hh
Q 006457 519 MK 520 (644)
Q Consensus 519 m~ 520 (644)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=9.5e-07 Score=73.31 Aligned_cols=118 Identities=12% Similarity=-0.023 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA 468 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 468 (644)
...+..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666677777777777766442 1234566667777777777777777777665 2223 46677888888
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCch
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWE 510 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 510 (644)
+...|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888999999999999999999998888888988888887753
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=1.5e-06 Score=72.50 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLL 466 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 466 (644)
+...+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 345566666666777777777777776643 233 4666777777777777777777777665 2223 566778888
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCC
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGR 508 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 508 (644)
..+...|++++|...++++++++|.+...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888899999999999988888888888888888776653
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=2.8e-05 Score=75.21 Aligned_cols=128 Identities=9% Similarity=0.077 Sum_probs=64.1
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhH---HHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChh----
Q 006457 219 FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVT---WNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAV---- 291 (644)
Q Consensus 219 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---- 291 (644)
..|+..+...+...+.-. + ..+|..-...+... +...+..+...|++++|..++++..+.....|+..
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 355555555555544322 1 12333333333333 33346778889999999999998873222222221
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 292 TLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE-ES----VIVGTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 292 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
.+..+...+...++++.|...+..+.+.... ++ ..+++.+...|...|++++|...|++.
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223444444555666666666666553221 11 113445555555555555555554443
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=1e-05 Score=78.29 Aligned_cols=162 Identities=10% Similarity=-0.040 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 006457 327 VGTSIIDMYCKCGQVDLARKAFNQMKE--K-NV------RSWTAMIAGYGMHCRAREALDLFYKMIKAGV---RPN--YI 392 (644)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 392 (644)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334466677888889888888875442 1 11 2234455667788899999999988875321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CC-CH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG-----VEHYGCMVDLLGRAGKLKEAYDLIEGM-KV------KA-DF 459 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 459 (644)
++..+...|...|++++|..+|+++..-....|+ ..++..+...|.+.|++++|.+.+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999999999888632111222 257888888999999999999988865 11 11 15
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHhhcc
Q 006457 460 VVWGSLLGACRIHKNVDLG-EIAAKKLFEL 488 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 488 (644)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888899999999999 7778887754
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=1.9e-06 Score=85.18 Aligned_cols=143 Identities=12% Similarity=-0.032 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+...-. .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA---------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH---------HHHHHHHHHHH
Confidence 4466666677777777777777777766632 221000 0011111000 01456777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHH-
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDV- 512 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 512 (644)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3333 6778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 006457 513 ERTRSLMK 520 (644)
Q Consensus 513 ~~~~~~m~ 520 (644)
.+.++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666654
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.5e-06 Score=71.96 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888765 2333 56788888888889999999999999999999999899999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 006457 505 NAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 505 ~~g~~~~a~~~~~~m~~~ 522 (644)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999998887653
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=1.1e-06 Score=77.79 Aligned_cols=117 Identities=7% Similarity=0.000 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA-CRIHKNV--DLG 478 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a 478 (644)
.|++++|...++..... .+.+...+..+...|...|++++|...|++. ...| +...|..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45555555555555432 1224455566666666666666666666654 1122 45566666666 5677776 788
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
...++++++.+|+++..+..++.+|...|++++|.+.++...+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888887778888888888888888888888777654
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=2.1e-06 Score=68.94 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC--CchhHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPN--NCGYHVLLSN 501 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 501 (644)
+...+..+...+.+.|++++|...+++. .. ..+...|..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777888888888888888775 22 235678888888889999999999999999999999 8889999999
Q ss_pred HHhhc-CCchHHHHHHHHHhhCCC
Q 006457 502 IYANA-GRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 502 ~~~~~-g~~~~a~~~~~~m~~~~~ 524 (644)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=1.1e-06 Score=82.80 Aligned_cols=136 Identities=10% Similarity=-0.098 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG--VEHYGCMVDLL 437 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 437 (644)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677778888888888777653 354444445555677888888888888755221 1 121 23566778888
Q ss_pred hhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 438 GRAGKLKEAYDLIEGMK---VKAD--FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 438 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
.+.|++++|++.|++.. ..|. ...+..+..++...|+.++|...++++.+.+|+ +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88888888888888762 2143 236667778888889999999999999988887 66555553
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=3.8e-07 Score=82.68 Aligned_cols=169 Identities=9% Similarity=-0.042 Sum_probs=97.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 333 DMYCKCGQVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
......|++++|.+.|+.-.+. ....|..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 3344455666665555533221 2345666666666777777777777776653 2211000000 0000
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006457 410 GWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFE 487 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 487 (644)
- ... .....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++
T Consensus 82 ~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 K---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 000 01356667777888888888888888765 2233 567888888999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCchHHH-HHHHHHhhC
Q 006457 488 LEPNNCGYHVLLSNIYANAGRWEDVE-RTRSLMKNR 522 (644)
Q Consensus 488 ~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 522 (644)
++|+++..+..++.++...|+.+++. ..++.|-.+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998888877776 455555433
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=1.5e-06 Score=71.40 Aligned_cols=95 Identities=16% Similarity=0.013 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999877 3344 6778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 006457 507 GRWEDVERTRSLMKNRR 523 (644)
Q Consensus 507 g~~~~a~~~~~~m~~~~ 523 (644)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887543
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.32 E-value=8.7e-06 Score=76.58 Aligned_cols=181 Identities=7% Similarity=-0.056 Sum_probs=134.4
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 006457 337 KCGQVDLARKAFNQMKE--K-NVRSWTAM-------IAGYGMHCRAREALDLFYKMIKAGVRPNY--------------- 391 (644)
Q Consensus 337 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 391 (644)
..++...|.+.|.+... | ....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888899999988774 3 34577777 3455555555555555554433 33321
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 006457 392 -------ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADF----V 460 (644)
Q Consensus 392 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 460 (644)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456678889999999999998843 3465446666777899999999999999977544433 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccC--CC-CchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELE--PN-NCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788899999999999999999998543 54 4457888999999999999999999999864
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=3.8e-06 Score=70.54 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=82.2
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35677778888888888888888888765 2233 567888888888999999999999999999999999999999999
Q ss_pred HhhcCCchHHHHHHHHHhhC
Q 006457 503 YANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 503 ~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...|++++|.+.++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999888753
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=2.7e-06 Score=75.33 Aligned_cols=129 Identities=10% Similarity=0.046 Sum_probs=96.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HhhcCCH--
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDL-LGRAGKL-- 443 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 443 (644)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 44677888888888887753 346677888888888889999999988888652 12356677778887 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 444 KEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 444 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
++|...++++ ...| +...|..+...+...|++++|...+++++++.|+++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999888876 3334 46688888889999999999999999999999988654433
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=1.1e-06 Score=75.24 Aligned_cols=106 Identities=8% Similarity=-0.114 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA 468 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 468 (644)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345556666777778888888877777542 2235667777777888888888888887765 2333 55677888888
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
+...|++++|+..+++++++.|+++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 888999999999999999988887765443
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=4.3e-06 Score=75.69 Aligned_cols=151 Identities=14% Similarity=0.005 Sum_probs=75.1
Q ss_pred hcCCHHHHHH---HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHH
Q 006457 337 KCGQVDLARK---AFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKA----GVRP-NYITFVSVLSACSHAGLVQ 408 (644)
Q Consensus 337 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 408 (644)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++.... |..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322223445666666666667777777666665541 1111 2334555556666667777
Q ss_pred HHHHHHHHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCh
Q 006457 409 EGWHWLNTMGHEFNIEP-----GVEHYGCMVDLLGRAGKLKEAYDLIEGMK----VKAD----FVVWGSLLGACRIHKNV 475 (644)
Q Consensus 409 ~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~ 475 (644)
+|...++.......-.+ ....+..+...+...|++++|.+.+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666666543211111 12334555555666666666655555430 0111 11234444555555555
Q ss_pred hHHHHHHHHhhc
Q 006457 476 DLGEIAAKKLFE 487 (644)
Q Consensus 476 ~~a~~~~~~~~~ 487 (644)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=3.1e-06 Score=73.90 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
.+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444444444444444444433 1122 3344444444445555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHh
Q 006457 507 GRWEDVERTRSLMK 520 (644)
Q Consensus 507 g~~~~a~~~~~~m~ 520 (644)
|++++|.+.+++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555554444
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=1.2e-05 Score=65.01 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=61.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555331 1223445555555555666666666655544 1222 4556666667777
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777776666555544
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.28 E-value=5.5e-06 Score=70.90 Aligned_cols=104 Identities=9% Similarity=-0.026 Sum_probs=84.7
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 006457 387 VRPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVW 462 (644)
Q Consensus 387 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 462 (644)
+.|+ ...+..+...+.+.|++++|...|+.+.. +.| +...|..+..+|.+.|++++|++.|++. ...| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3453 34677777888899999999999998865 345 5788888999999999999999999877 3344 56688
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 463 GSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 463 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
..+..++...|++++|...+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998753
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.26 E-value=6.2e-06 Score=67.57 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KV-KADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999887 22 3367789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhhC
Q 006457 505 NAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 505 ~~g~~~~a~~~~~~m~~~ 522 (644)
..|++++|.+.++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998754
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=6.4e-06 Score=66.71 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556778888999999999999999987 2333 6778888999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhC
Q 006457 504 ANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~ 522 (644)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988754
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.26 E-value=5.8e-06 Score=68.77 Aligned_cols=98 Identities=8% Similarity=-0.057 Sum_probs=88.4
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999986 4444 677899999999999999999999999999999999999999999
Q ss_pred HhhcCCchHHHHHHHHHhhC
Q 006457 503 YANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 503 ~~~~g~~~~a~~~~~~m~~~ 522 (644)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.24 E-value=2.1e-05 Score=68.29 Aligned_cols=125 Identities=13% Similarity=-0.049 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...+..+...|.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 3344444444555555555555544431 223444444444555555555555555554331 1123444455555555
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCChhHHHHHHHHhh
Q 006457 439 RAGKLKEAYDLIEGM-KVKA-DFVVWGS--LLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 439 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
+.|++++|.+.|+++ ...| +...+.. +...+...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555443 1112 2223322 2222444555555555555443
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.7e-05 Score=67.40 Aligned_cols=111 Identities=11% Similarity=-0.041 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGS 464 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 464 (644)
...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 33444444455555555555555555422 2333 345555556666666666666666554 2223 4556777
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
+..++...|++++|...++++++++|+++..+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7777777888888888888888888877766666655543
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=8.4e-06 Score=73.72 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=27.4
Q ss_pred hcCCHHHHHH---HHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 235 RGGHVDVSRK---VFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 235 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4566666666 4444333345566666667777777777777766654
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=6.3e-06 Score=85.70 Aligned_cols=116 Identities=7% Similarity=-0.049 Sum_probs=84.5
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 006457 400 ACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 400 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 476 (644)
.+...|++++|.+.|+++.+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344566667777766666442 33 3666777777777777777777777665 3334 5668888889999999999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHH--HhhcCCchHHHHHHHH
Q 006457 477 LGEIAAKKLFELEPNNCGYHVLLSNI--YANAGRWEDVERTRSL 518 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 518 (644)
+|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999888888 8888999999998874
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=8.7e-06 Score=69.20 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5778888999999999999999999986 56677 578888999999999999999999999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHhhC
Q 006457 501 NIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988753
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=5e-06 Score=68.95 Aligned_cols=95 Identities=5% Similarity=-0.084 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCch-------hHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCG-------YHV 497 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 497 (644)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667788888899999999988876 3344 5678888999999999999999999999999887643 677
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhh
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999988764
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=7.9e-06 Score=69.29 Aligned_cols=106 Identities=8% Similarity=-0.125 Sum_probs=73.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445555666777777777777776542 1224666677777777777777777777765 2233 4556777788888
Q ss_pred hcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 471 IHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
..|++++|...+++++++.|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 888888888888888888888776655443
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.3e-05 Score=66.18 Aligned_cols=108 Identities=7% Similarity=-0.148 Sum_probs=67.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 006457 393 TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACR 470 (644)
Q Consensus 393 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 470 (644)
.+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555666666666666665432 1223556666666666666666666666654 2233 4557777777778
Q ss_pred hcCChhHHHHHHHHhhccC------CCCchhHHHHHHH
Q 006457 471 IHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNI 502 (644)
Q Consensus 471 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 502 (644)
..|++++|...++++++++ |+++.....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888877 7666666555544
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.00013 Score=71.09 Aligned_cols=226 Identities=12% Similarity=0.047 Sum_probs=122.0
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCCh-hhHHHHHHHHHccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006457 257 WNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNA-VTLSAVLLAIAHLG-VLRLGKCIHDQVIKMDLEESVIVGTSIIDM 334 (644)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 334 (644)
++.+-....+.+..++|++++..+. .+.|+. ..++.--..+...+ .++++...++.++... +.+..+|+.-...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L---~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIV---RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH---HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3433334444555577888888887 233443 34555555555566 4777777777777654 3455555555555
Q ss_pred HHhc-C-CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006457 335 YCKC-G-QVDLARKAFNQMKEK---NVRSWTAMIAGYGMHCRAR--------EALDLFYKMIKAGVRPNYITFVSVLSAC 401 (644)
Q Consensus 335 ~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 401 (644)
+.+. + +++++.++++.+.+. |..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5554 5 666777777766643 4445555444444444333 5566666665543 22444555554444
Q ss_pred HccCC-------HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006457 402 SHAGL-------VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKN 474 (644)
Q Consensus 402 ~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 474 (644)
.+.+. +++++++++.++. ..| -|...|+-+-..+...|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~---~~P-------------------------------~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIH---LIP-------------------------------HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHH---HCT-------------------------------TCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHH---hCC-------------------------------CCHHHHHHHHHHHHhcCC
Confidence 44443 3444444444432 122 133444444433333332
Q ss_pred h--------------------hHHHHHHHHhhcc------CCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 475 V--------------------DLGEIAAKKLFEL------EPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 475 ~--------------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
. .........+... ++.++.+...|+.+|...|+.++|.++++.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2 1112222222221 256677888899999999999999999999864
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.00049 Score=66.64 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=129.3
Q ss_pred HCCChh-HHHHHHHHhHHcCCCCCChhh-HHHHHHHHHcccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006457 266 QNGLAA-EALDVFDQMVKSTDVKCNAVT-LSAVLLAIAHLGV----------LRLGKCIHDQVIKMDLEESVIVGTSIID 333 (644)
Q Consensus 266 ~~g~~~-~A~~~~~~m~~~~~~~p~~~t-~~~ll~a~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~li~ 333 (644)
+.|.++ +|++++..+. .+.|+..| ++.--..+...+. ++++..+++.+.... +-+..+|+.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L---~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQIL---GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 444443 5677776666 33444433 3322222222222 456666666666654 445566666555
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 006457 334 MYCKCG--QVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR-AREALDLFYKMIKAGVRPNYITFVSVLSACSHA--- 404 (644)
Q Consensus 334 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--- 404 (644)
.+.+.| .++++..+++.+.+ +|..+|+.-...+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666666 36777777777663 456677776666667776 577888888887754 33555555544444333
Q ss_pred -----------CCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHH
Q 006457 405 -----------GLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRA-----------GKLKEAYDLIEGM-KVKADFV 460 (644)
Q Consensus 405 -----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 460 (644)
+.++++++++..... ..| |...|+-+-..+.+. +.++++++.++++ ...||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 346677777776654 233 455565444444444 3466666666665 344543
Q ss_pred HHHHHHHHH-----HhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 461 VWGSLLGAC-----RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 461 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
.|..+..+. ...|..++....+.++.+++|.....|.-+...
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 343222211 234556677777777777777766666555443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=1.6e-05 Score=69.17 Aligned_cols=108 Identities=13% Similarity=-0.096 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGA 468 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 468 (644)
...+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445566666677777777777777776542 1225667777777788888888888877765 2334 46788889999
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
+...|++++|...++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665544
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=2.1e-05 Score=75.47 Aligned_cols=190 Identities=12% Similarity=-0.020 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006457 290 AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGY 366 (644)
Q Consensus 290 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 366 (644)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444455555666666666666666666543 33566777888888889999999998888765 3566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNY-ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKE 445 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (644)
...|++++|+..|++..+. .|+. ..+...+..... ..++..... ... ....++......+...+ .|++++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEE-RRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHH-TCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHH-HHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999988763 2321 011111111111 111112211 212 24455555555554433 689999
Q ss_pred HHHHHHhC-CCCCCHHHH-HHHHHHHHhc-CChhHHHHHHHHhhccC
Q 006457 446 AYDLIEGM-KVKADFVVW-GSLLGACRIH-KNVDLGEIAAKKLFELE 489 (644)
Q Consensus 446 A~~~~~~~-~~~p~~~~~-~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 489 (644)
|.+.+++. ...|+.... ..+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99888775 456655433 3333334444 66788999999887743
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=1e-05 Score=70.32 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 357788888889999999999999999999999999999999999999999999999988764
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=6.1e-06 Score=70.00 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcc-------CCCCchhH----HHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 460 VVWGSLLGACRIHKNVDLGEIAAKKLFEL-------EPNNCGYH----VLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888889999888888888888 99999999 9999999999999999999998864
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=1.2e-05 Score=66.46 Aligned_cols=97 Identities=6% Similarity=-0.042 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999986 2233 6778889999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHhhC
Q 006457 504 ANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 504 ~~~g~~~~a~~~~~~m~~~ 522 (644)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.09 E-value=3.5e-05 Score=80.07 Aligned_cols=114 Identities=14% Similarity=0.004 Sum_probs=48.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 444 (644)
+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|+..++++.+ +.| +...|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHH
Confidence 334455555555555554431 12344444455555555555555555555433 122 2444455555555555555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChhHHHHHHH
Q 006457 445 EAYDLIEGM-KVKA-DFVVWGSLLGA--CRIHKNVDLGEIAAK 483 (644)
Q Consensus 445 ~A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 483 (644)
+|.+.|++. ...| +...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555443 1112 12223333322 444455555555555
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=1.2e-05 Score=66.57 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=57.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC---chhHHHHHHHHh
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKADF----VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN---CGYHVLLSNIYA 504 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 504 (644)
+...+.+.|++++|.+.|++. ...|+. ..|..+..++...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666654 112222 355566666677777777777777777777776 555677777777
Q ss_pred hcCCchHHHHHHHHHhh
Q 006457 505 NAGRWEDVERTRSLMKN 521 (644)
Q Consensus 505 ~~g~~~~a~~~~~~m~~ 521 (644)
..|++++|.+.++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.9e-05 Score=78.77 Aligned_cols=162 Identities=6% Similarity=-0.175 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCCC-hhH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKA-GVRPNYI----TFVSVLSACSHAGLVQEGWHWLNTMGHE---FNIEPG-VEH 429 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 429 (644)
+..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|.++++..++.....- .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556677777777777777777766542 1112221 1222222334467777777777665421 122222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccC---CCC----ch
Q 006457 430 YGCMVDLLGRAGKLKEAYDLIEGM-----K--VKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFELE---PNN----CG 494 (644)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 494 (644)
+..|...|...|++++|..++++. + .+|. ..++..++..|...|++++|...+++++... |++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777788888888888888877755 1 1222 3366777788888888888888888877653 221 24
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 495 YHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56667777888888888888776664
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.06 E-value=0.0018 Score=63.02 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHCC-ChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGMIE---KDAVTWNSIIAIYAQNG-LAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 302 (644)
+.+-....+.+..++|+++++.+.. .+..+|+.--..+...| .++++++.+..+. .. -+-+..+++.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~-nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQ-NLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HT-TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-Hh-CCCcHHHHHHHHHHHHH
Confidence 3333444555666889999998833 36778998888888888 5999999999998 32 23456677777667766
Q ss_pred c-c-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH--------HHHHHHHhcCC---CChhhHHHHHHHHHhc
Q 006457 303 L-G-VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVD--------LARKAFNQMKE---KNVRSWTAMIAGYGMH 369 (644)
Q Consensus 303 ~-~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~ 369 (644)
. + +++++..+++.+++.. +.+...|+--.-.+.+.|.++ ++.+.++++.+ .|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 6 6 7899999999988754 456677776555555555555 88888887764 4778899988888888
Q ss_pred CC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 370 CR-------AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 370 g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
++ ++++++.++++.... +-|...|..+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 76 789999999998853 3366666665555555443
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=2.4e-05 Score=65.53 Aligned_cols=100 Identities=6% Similarity=-0.163 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 006457 390 NYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLG 467 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 467 (644)
+...+..+...+...|++++|...|+..... .+.+...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4445555555566666666666666655432 1223555666666666666666666666554 2223 4556677777
Q ss_pred HHHhcCChhHHHHHHHHhhccCCC
Q 006457 468 ACRIHKNVDLGEIAAKKLFELEPN 491 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~~~p~ 491 (644)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777777665
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=3.2e-05 Score=79.98 Aligned_cols=144 Identities=10% Similarity=-0.034 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 346677777777777888888777777663 2221000 0 000000 000 01456777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876 2333 57788899999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHhh
Q 006457 514 R-TRSLMKN 521 (644)
Q Consensus 514 ~-~~~~m~~ 521 (644)
+ .++.|-.
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.04 E-value=2.4e-05 Score=62.55 Aligned_cols=93 Identities=16% Similarity=0.001 Sum_probs=46.1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA---DFVVWGSLLGACRIH- 472 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~- 472 (644)
...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 33344444444444444444321 1122334444444555555555555555443 1222 345566666666666
Q ss_pred CChhHHHHHHHHhhccCCCC
Q 006457 473 KNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 473 g~~~~a~~~~~~~~~~~p~~ 492 (644)
|++++|.+.++++++..|++
T Consensus 91 ~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SCSHHHHHHHHHHGGGCCCC
T ss_pred CCHHHHHHHHHHHhhcccCC
Confidence 66666666666666666654
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00093 Score=64.67 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhhHHHHHHHHHhcC--C
Q 006457 307 RLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQ----------VDLARKAFNQMKE---KNVRSWTAMIAGYGMHC--R 371 (644)
Q Consensus 307 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 371 (644)
++|....+.++..+ +.+..+++.--..+...|. ++++..+++.+.. ++..+|+.-...+...| .
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46788888887755 3334445433333322222 6778888887763 46778888888888877 4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc----------
Q 006457 372 AREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL-VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRA---------- 440 (644)
Q Consensus 372 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------- 440 (644)
+++++++++++.+.. +-|...|+.-...+...|. +++++++++.++.. -+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 899999999999864 4477788877777788888 68999999999763 234667777666666554
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHhhccCCCCchhHHHHHHH-
Q 006457 441 ----GKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH-----------KNVDLGEIAAKKLFELEPNNCGYHVLLSNI- 502 (644)
Q Consensus 441 ----g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~- 502 (644)
+.++++++.+.+. ...| |...|+-+-..+... +-++++++.++++++++|++...+..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4578888888876 2334 777888766666554 457899999999999999986555444332
Q ss_pred --HhhcCCchHHHHHHHHHhh
Q 006457 503 --YANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 503 --~~~~g~~~~a~~~~~~m~~ 521 (644)
....|..++....+.++++
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 2246777788888888875
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=1.7e-05 Score=65.59 Aligned_cols=95 Identities=7% Similarity=-0.022 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC-------chhHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-K-VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN-------CGYHV 497 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 497 (644)
...+..+...+...|++++|...|++. . .+.+...|..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777778888888888888765 2 22356678888888888999999999999999887766 77889
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhh
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.++.+|...|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998875
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=3.7e-06 Score=68.56 Aligned_cols=82 Identities=16% Similarity=0.049 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 440 AGKLKEAYDLIEGM-KV---KA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 440 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666554 22 13 234566666666667777777777777777777776677777777777777777777
Q ss_pred HHHHHhh
Q 006457 515 TRSLMKN 521 (644)
Q Consensus 515 ~~~~m~~ 521 (644)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.99 E-value=5.2e-05 Score=62.51 Aligned_cols=105 Identities=6% Similarity=-0.074 Sum_probs=52.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHHHHH
Q 006457 396 SVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KV----KAD----FVVWGSLL 466 (644)
Q Consensus 396 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ll 466 (644)
.+...+...|++++|..+|+..... .+.+...+..+...|...|++++|...++++ .. .++ ..+|..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3333444444444444444444331 1123344444444444555555555444443 10 112 44566666
Q ss_pred HHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH
Q 006457 467 GACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY 503 (644)
Q Consensus 467 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 503 (644)
..+...|++++|...++++++..| ++.....+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 677777777777777777777766 345555554443
No 177
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.98 E-value=7.2e-05 Score=73.80 Aligned_cols=138 Identities=9% Similarity=-0.052 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhhHHHHHHH
Q 006457 304 GVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE--KN----------------VRSWTAMIAG 365 (644)
Q Consensus 304 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~ 365 (644)
++++.|...+....+.. +.+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332211 22456788899999999999999999998753 32 2456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHH
Q 006457 366 YGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLK 444 (644)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 444 (644)
|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+.+.+ +.| +...+..+..++.+.|+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666542 22444555555555556666666655555533 122 2344444444444444444
Q ss_pred HH
Q 006457 445 EA 446 (644)
Q Consensus 445 ~A 446 (644)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=4.1e-05 Score=65.90 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHH
Q 006457 358 SWTAMIAGYGMHCRAREALDLFYKMIKAGVR-PNY----ITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGC 432 (644)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 432 (644)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..+++.......
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------- 80 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR---------- 80 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------
Confidence 4555666666666666666666665542100 111 2344444455555555555555554432100
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC------CCCchhHHHHHHHHhh
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE------PNNCGYHVLLSNIYAN 505 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 505 (644)
..+..+ ...++..+...+...|++++|...+++++++. +.....+..++.+|..
T Consensus 81 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 81 -------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 000000 12344555566666666666666666665542 1123467778888888
Q ss_pred cCCchHHHHHHHHHhh
Q 006457 506 AGRWEDVERTRSLMKN 521 (644)
Q Consensus 506 ~g~~~~a~~~~~~m~~ 521 (644)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8888888888877653
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00016 Score=74.01 Aligned_cols=161 Identities=11% Similarity=-0.034 Sum_probs=93.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhh
Q 006457 293 LSAVLLAIAHLGVLRLGKCIHDQVIKMD-LEESV----IVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRS 358 (644)
Q Consensus 293 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~ 358 (644)
+..+...|...|++++|.+.+..+.+.- -.++. .+.+.+-..+...|+++.|..++..... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444445555555555555554443310 00111 1222233333445666666666655431 11 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC-C-CC-C--hh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKA--GV--RPN-YITFVSVLSACSHAGLVQEGWHWLNTMGHEFN-I-EP-G--VE 428 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~-~p-~--~~ 428 (644)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++....... + .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888888877642 11 222 34677777888888898888888887653211 1 11 1 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5677778888889998888776654
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=7.9e-05 Score=67.12 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCC
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-D----------------FVVWGSLLGACRIHKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 490 (644)
.+..+...+.+.|++++|.+.|++. ...| + ...|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555666666666665544 1111 1 36788888999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 491 NNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+++..+..++.+|...|++++|.+.+++..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.94 E-value=9e-05 Score=61.20 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTM 417 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (644)
|..+...+.+.|++++|++.|++.++.. +-+...|..+..++...|++++|+..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 4445555555555555555555555431 223444555555555555555555555554
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=9.8e-05 Score=60.90 Aligned_cols=100 Identities=7% Similarity=-0.113 Sum_probs=60.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCC-h---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEFNIEPG-V---EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD----FVVWGSLLGA 468 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 468 (644)
...+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33445556666666666655442 122 1 35555666666666666666666654 22232 4456667777
Q ss_pred HHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 469 CRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 469 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
+...|++++|...++++++..|+++.......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 77888888888888888888887765544433
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=1.1e-05 Score=68.51 Aligned_cols=71 Identities=15% Similarity=0.015 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM--------KVKADF-VVW----GSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.|..+..++.+.|++++|+..+++. ++.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555555556666666555555443 337754 478 899999999999999999999999999988665
Q ss_pred HHHH
Q 006457 496 HVLL 499 (644)
Q Consensus 496 ~~~l 499 (644)
...+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4444
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.89 E-value=5.9e-05 Score=61.73 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=53.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHK 473 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 473 (644)
+...+.+.|++++|...|+.+.+ ..| +...|..+..++.+.|++++|+..|++. ...| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34445556666666666666543 223 4555566666666666666666666654 2333 4456666667777777
Q ss_pred ChhHHHHHHHHhhccCCCC
Q 006457 474 NVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 474 ~~~~a~~~~~~~~~~~p~~ 492 (644)
++++|...++++++++|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 7777777777777777764
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=6.5e-06 Score=66.09 Aligned_cols=92 Identities=10% Similarity=-0.042 Sum_probs=74.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC------chhHH
Q 006457 426 GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN------CGYHV 497 (644)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 497 (644)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888876 2333 67788888899999999999999999999999998 77788
Q ss_pred HHHHHHhhcCCchHHHHHHH
Q 006457 498 LLSNIYANAGRWEDVERTRS 517 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~ 517 (644)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765443
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=2.3e-05 Score=77.51 Aligned_cols=147 Identities=9% Similarity=-0.089 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 446777888888899999999999998874 455442 233444444433221 236778888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHH-hhcCCchHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIY-ANAGRWEDV 512 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 512 (644)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 3334 5678888999999999999999999999999999988888888773 455677777
Q ss_pred HHHHHHHhhC
Q 006457 513 ERTRSLMKNR 522 (644)
Q Consensus 513 ~~~~~~m~~~ 522 (644)
.++++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888777643
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=4.1e-05 Score=75.63 Aligned_cols=152 Identities=9% Similarity=-0.056 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHA 404 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 404 (644)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788889999999999999998653221111 1233344444443221 13677788889999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHHHH
Q 006457 405 GLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKAD-FVVWGSLLGA-CRIHKNVDLGEIA 481 (644)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~ 481 (644)
|++++|+..++...+. -+.+...|..+..+|...|++++|.+.|++. ...|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988652 2235788889999999999999999999987 45554 3345544444 2445677888899
Q ss_pred HHHhhccCCCCc
Q 006457 482 AKKLFELEPNNC 493 (644)
Q Consensus 482 ~~~~~~~~p~~~ 493 (644)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999988764
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.85 E-value=5.7e-05 Score=64.96 Aligned_cols=127 Identities=9% Similarity=-0.084 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----
Q 006457 325 VIVGTSIIDMYCKCGQVDLARKAFNQMKE-----KN----VRSWTAMIAGYGMHCRAREALDLFYKMIKAGV-RPN---- 390 (644)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 390 (644)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|++.+++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888999999999999999988653 22 14788889999999999999999999875311 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEF---NIEP-GVEHYGCMVDLLGRAGKLKEAYDLIE 451 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (644)
...+..+...+...|++++|...++...... +..+ ....+..+...|...|++++|.+.++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3456666777778888888888877764311 1000 12233444444444445444444444
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.0008 Score=71.16 Aligned_cols=169 Identities=8% Similarity=-0.008 Sum_probs=132.1
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-
Q 006457 340 QVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCR----------AREALDLFYKMIKAGVRPNYITFVSVLSACSHAG- 405 (644)
Q Consensus 340 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g- 405 (644)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777777763 345677776666666666 889999999998864 346778888888888888
Q ss_pred -CHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 006457 406 -LVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAG-KLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIH--------- 472 (644)
Q Consensus 406 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------- 472 (644)
++++++++++.+.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999663 2335777887777888888 889999998887 3444 677888887776653
Q ss_pred -----CChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchH
Q 006457 473 -----KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWED 511 (644)
Q Consensus 473 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 511 (644)
+.++++.+.+.++++++|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998655
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=8e-05 Score=74.43 Aligned_cols=136 Identities=11% Similarity=0.004 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHH
Q 006457 357 RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVD 435 (644)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 435 (644)
..|..+...+.+.|++++|++.|++.++. .|+.. .....+ .. ....| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~---~~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DG---AKLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HH---GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HH---HHHHHHHHHHHHHHHH
Confidence 35667777777888888888888777652 11100 000111 11 01222 3567888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 436 LLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 4455 56788889999999999999999999999999999999999999998888887776
Q ss_pred H
Q 006457 514 R 514 (644)
Q Consensus 514 ~ 514 (644)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.80 E-value=5.7e-05 Score=65.51 Aligned_cols=76 Identities=17% Similarity=0.054 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc-hhHHHHHHH
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC-GYHVLLSNI 502 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 502 (644)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777888888889999988888776 3334 566888899999999999999999999999999987 444455443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=5.7e-05 Score=77.96 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=90.4
Q ss_pred HHccCCHHHHHHHHHHHhhhc--CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 006457 401 CSHAGLVQEGWHWLNTMGHEF--NIEP----GVEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKADF-VVWGS 464 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 464 (644)
+...|++++|+.++++..... -+.| ...+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677777777776664321 1222 2456777888888888888888877765 234443 37888
Q ss_pred HHHHHHhcCChhHHHHHHHHhhc-----cCCCCchh---HHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFE-----LEPNNCGY---HVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
|...|...|++++|+.+++++++ +.|+.|.+ ...|..++...|++++|..+++.++++-.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999887 45776544 45677888899999999999999987543
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=2.6e-05 Score=63.45 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHhhhcCC-CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 006457 404 AGLVQEGWHWLNTMGHEFNI-EP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGE 479 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 479 (644)
.|++++|+..|++..+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666677777666431 10 13 3556667777777777777777777765 2233 4567777778888888888888
Q ss_pred HHHHHhhccCCCCchhH
Q 006457 480 IAAKKLFELEPNNCGYH 496 (644)
Q Consensus 480 ~~~~~~~~~~p~~~~~~ 496 (644)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888776543
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.76 E-value=0.00022 Score=73.59 Aligned_cols=64 Identities=8% Similarity=-0.062 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999998864
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.74 E-value=8.8e-05 Score=58.22 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678889999999999999999999999999999999999999999999999999999998764
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.73 E-value=0.00013 Score=72.84 Aligned_cols=112 Identities=5% Similarity=-0.055 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKA-DFVVWGSLLGAC 469 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 469 (644)
...+..+...+.+.|++++|+..|+++.+-. |.. ...-..+++. ...| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666677777777888777777764410 000 0000111111 1222 456888899999
Q ss_pred HhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 470 RIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 470 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998875
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00013 Score=55.77 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHh
Q 006457 427 VEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYA 504 (644)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 504 (644)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888765 2223 56678888888899999999999999999999999888888888876
Q ss_pred hcC
Q 006457 505 NAG 507 (644)
Q Consensus 505 ~~g 507 (644)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00012 Score=59.16 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=62.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 445 EAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 445 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555543 3334 5668888888889999999999999999999999989999999999999999999999988765
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.55 E-value=0.00036 Score=53.59 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 456 KADFVVWGSLLGACRIHKN---VDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
.+|+..|..+..++...++ .++|...++++++++|+++.....++..+...|++++|...|+.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467778888877765554 78999999999999999999999999999999999999999999987654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.00012 Score=75.58 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=86.6
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCCC---chhHH
Q 006457 436 LLGRAGKLKEAYDLIEGM---------KVKAD-FVVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPNN---CGYHV 497 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~ 497 (644)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ .|++ ...+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 13343 347899999999999999999999999873 4554 45688
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 498 LLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
.|+.+|...|++++|..++++..+--.. .-...||.+.++...+.+...++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987642110 012569999888777666665554
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=6.8e-05 Score=63.42 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=64.0
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHhhccCCCCchhHHHHHHHHhhc
Q 006457 439 RAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKN----------VDLGEIAAKKLFELEPNNCGYHVLLSNIYANA 506 (644)
Q Consensus 439 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 506 (644)
|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666554 2233 45566666666655554 56999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 006457 507 G-----------RWEDVERTRSLMKNRR 523 (644)
Q Consensus 507 g-----------~~~~a~~~~~~m~~~~ 523 (644)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988643
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.48 E-value=0.00015 Score=73.78 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=82.3
Q ss_pred HHHHhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCCC---chh
Q 006457 434 VDLLGRAGKLKEAYDLIEGM------KVKAD----FVVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPNN---CGY 495 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~ 495 (644)
+.-+.+.|++++|++++++. ...|+ ..+++.|..+|...|++++|+.++++++++ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777777654 01222 236777888888888888888888888763 3444 456
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 006457 496 HVLLSNIYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQ 567 (644)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~ 567 (644)
+..|+.+|...|++++|..++++..+--.. .-...||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987642110 012569999999988888887775
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00048 Score=54.77 Aligned_cols=65 Identities=8% Similarity=-0.129 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999998764
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.30 E-value=0.00016 Score=73.41 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhcc-----CCCC---chhHHHHHH
Q 006457 440 AGKLKEAYDLIEGM---------KVKADF-VVWGSLLGACRIHKNVDLGEIAAKKLFEL-----EPNN---CGYHVLLSN 501 (644)
Q Consensus 440 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 501 (644)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.++++++++ .|++ ...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 122332 36777888888888888888888888763 3443 456778888
Q ss_pred HHhhcCCchHHHHHHHHHhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHH
Q 006457 502 IYANAGRWEDVERTRSLMKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLE 560 (644)
Q Consensus 502 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~ 560 (644)
+|...|++++|..++++..+--.. .-...||.+.+++.++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 999999999999998887642110 01256888877665554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.30 E-value=0.00047 Score=58.28 Aligned_cols=122 Identities=10% Similarity=-0.069 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 006457 368 MHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAY 447 (644)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (644)
+.+++++|++.+++..+.. +-+...|..+..++...+.++.+.... +.+++|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eAi 66 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHHH
Confidence 4445666666666666542 224455555555555554432111100 0123455
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 448 DLIEGM-KVKA-DFVVWGSLLGACRIH-----------KNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 448 ~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++..+...+-. .++|.+
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~e 139 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQ 139 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHh
Confidence 555443 2333 233555555555544 58999999999999999998644443322 355666
Q ss_pred HHHHHhhCC
Q 006457 515 TRSLMKNRR 523 (644)
Q Consensus 515 ~~~~m~~~~ 523 (644)
+.-.....+
T Consensus 140 l~~~~~~~~ 148 (158)
T 1zu2_A 140 LHAEAYKQG 148 (158)
T ss_dssp HHHHHHHSS
T ss_pred ccCcccccc
Confidence 655555443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.27 E-value=0.0028 Score=52.95 Aligned_cols=89 Identities=8% Similarity=-0.126 Sum_probs=43.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCCCCchhHHHHHHHHhh---
Q 006457 433 MVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYAN--- 505 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 505 (644)
|..+|...+.+++|.+.|++.-...+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333334444444444433212234444444444443 44555555555555544 334555566666665
Q ss_pred -cCCchHHHHHHHHHhhCC
Q 006457 506 -AGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 506 -~g~~~~a~~~~~~m~~~~ 523 (644)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666655554
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.18 E-value=0.0068 Score=64.02 Aligned_cols=148 Identities=11% Similarity=0.006 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 006457 370 CRAREALDLFYKMIKAGVRPN-YITFVSVLSACSHAGL----------VQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLG 438 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (644)
...++|++.++++... .|+ ...|+.--.++...|+ +++++++++.+.+. -+-+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456899999999985 554 4456655555555666 89999999999763 2335778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhccCCCCchhHHHHHHHHhhc-------
Q 006457 439 RAG--KLKEAYDLIEGM-KVK-ADFVVWGSLLGACRIHK-NVDLGEIAAKKLFELEPNNCGYHVLLSNIYANA------- 506 (644)
Q Consensus 439 ~~g--~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 506 (644)
+.| ++++|+++++++ ... -|...|+.-.......| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999988 233 37889999888888888 899999999999999999999999999988774
Q ss_pred -------CCchHHHHHHHHHhh
Q 006457 507 -------GRWEDVERTRSLMKN 521 (644)
Q Consensus 507 -------g~~~~a~~~~~~m~~ 521 (644)
++++++.+.++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877664
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.18 E-value=0.00014 Score=71.94 Aligned_cols=436 Identities=11% Similarity=0.066 Sum_probs=242.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHH
Q 006457 3 LSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKS 82 (644)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 82 (644)
...+..|+.|..+..+.+++.+|..-| +... |+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSY--IKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSS--CCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHH--HhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456778888999999999998888776 3444 667789999999999999999988887666432 34444678888
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCC----------------------CCC
Q 006457 83 CSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQR----------------------IRN 140 (644)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------~~~ 140 (644)
|++.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+..- ..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888887765444332 356555566777777788888887777665432 246
Q ss_pred eecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCC-
Q 006457 141 IVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGF- 219 (644)
Q Consensus 141 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~- 219 (644)
+.||-.+-.+|...+.+.-|.-.--.+. .....+..++.-|-..|.+++...+++... |+
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI-----------------vhadeL~elv~~YE~~G~f~ELIsLlEagl--glE 259 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----------------VHADELEELINYYQDRGYFEELITMLEAAL--GLE 259 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH-----------------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TST
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc-----------------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCC
Confidence 7778888888888887766654433333 111112234455667777777666665543 33
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCC----CC-------CHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCC
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMI----EK-------DAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKC 288 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 288 (644)
......++-|.-.|+|- +.++..+.++..- -| ....|.-++-.|.+-.+++.|... |. .. +|
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi-~h--~~ 332 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MM-NH--PT 332 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TT-SC--HH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HH-hC--Ch
Confidence 23566788888888876 3444444443321 11 445688888888888888877533 22 11 11
Q ss_pred ChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHH-------------HHHHHhcCCHHHHHHHHHhcCCCC
Q 006457 289 NAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSI-------------IDMYCKCGQVDLARKAFNQMKEKN 355 (644)
Q Consensus 289 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~~~~~~ 355 (644)
+..--..+.....+..+.+---+....-++ -.+...+-| ++.+.+.|++.-....+......|
T Consensus 333 ~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~----e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N 408 (624)
T 3lvg_A 333 DAWKEGQFKDIITKVANVELYYRAIQFYLE----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 408 (624)
T ss_dssp HHCCGGGGTTTGGGCSCSHHHHHHHHHHTT----SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSC
T ss_pred hhccHHHHHHHHHHcchHHHHHHHHHHHHH----hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 111111111222222222222111111111 111122233 334444555544444444444444
Q ss_pred hhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 006457 356 VRSWT-AMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMV 434 (644)
Q Consensus 356 ~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 434 (644)
...-| ++-..|....+++ ++..-+.+|-+-..+.-|.++ ++ .+-.+.-..-.
T Consensus 409 ~~aVNeAln~L~IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL-----Ek---HeL~eFRrIAA 461 (624)
T 3lvg_A 409 NKSVNESLNNLFITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL-----EK---HELIEFRRIAA 461 (624)
T ss_dssp CHHHHHHHHHHHHHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH-----HT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHH-------------------HHHHHHHHhccccHHHHHHHH-----hh---CchHHHHHHHH
Confidence 43333 2333344444432 233333333333333333222 11 12222333334
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHH
Q 006457 435 DLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVER 514 (644)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 514 (644)
..|.+.++|+++.++..+=+.-.| .+...+..|+.+.++++++-.++.+-. ..+....-.|...=+.|-+.+
T Consensus 462 ~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~~--EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 462 YLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEKR--ECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCST--HHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCch--HHHHHHHHHHhhccChHHHHH
Confidence 567788888888777654432222 233345667777777777776665432 445555555556656665554
Q ss_pred H
Q 006457 515 T 515 (644)
Q Consensus 515 ~ 515 (644)
+
T Consensus 534 l 534 (624)
T 3lvg_A 534 T 534 (624)
T ss_dssp H
T ss_pred H
Confidence 3
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.12 E-value=0.0011 Score=50.37 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhC
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNR 522 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 522 (644)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34578888889999999999999999999999999999999999999999999999999988753
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.011 Score=57.54 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=76.1
Q ss_pred CChhhHHHHHHHHH--hcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc----cC----CHHHHHHHHHHHhh
Q 006457 354 KNVRSWTAMIAGYG--MHCR---AREALDLFYKMIKAGVRPN-YITFVSVLSACSH----AG----LVQEGWHWLNTMGH 419 (644)
Q Consensus 354 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~----~g----~~~~a~~~~~~~~~ 419 (644)
.+...|...+.+.. ..++ ..+|+.+|++..+. .|+ ...+..+..++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777776543 2333 46788999998884 565 3344443333321 00 01111111111111
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 420 EFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
....+.+..+|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0112335666666666666667777777777665 2346666665666666677777777777777777777653
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.05 E-value=0.0026 Score=53.16 Aligned_cols=112 Identities=12% Similarity=-0.065 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 006457 370 CRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGR----AGKLKE 445 (644)
Q Consensus 370 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 445 (644)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988887 44444 556666777888899999988552 466777888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhccCC
Q 006457 446 AYDLIEGMKVKADFVVWGSLLGACRI----HKNVDLGEIAAKKLFELEP 490 (644)
Q Consensus 446 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 490 (644)
|.+.|++.-..-+...+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887434577788888888877 7899999999999888753
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.02 E-value=0.0021 Score=51.48 Aligned_cols=79 Identities=9% Similarity=-0.069 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006457 410 GWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLF 486 (644)
Q Consensus 410 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 486 (644)
++..|+...+ ..| +...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555432 223 4556666666666777777777666654 2223 45566677777777777777777777777
Q ss_pred ccCCC
Q 006457 487 ELEPN 491 (644)
Q Consensus 487 ~~~p~ 491 (644)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.004 Score=63.02 Aligned_cols=94 Identities=12% Similarity=-0.048 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 006457 404 AGLVQEGWHWLNTMGHEF--NIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKADF-VVWGSLLG 467 (644)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~ 467 (644)
.|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554321 12222 456677777777777777777777665 234443 37888888
Q ss_pred HHHhcCChhHHHHHHHHhhc-----cCCCCchhHH
Q 006457 468 ACRIHKNVDLGEIAAKKLFE-----LEPNNCGYHV 497 (644)
Q Consensus 468 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 497 (644)
.|...|++++|+.+++++++ +.|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 89999999999999998877 3677765443
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.87 E-value=0.0042 Score=48.33 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006457 356 VRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTM 417 (644)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 417 (644)
...|..+...|...|++++|+..|++..+.. +-+...|..+..++...|++++|...|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555555555555432 112334444555555555555555555544
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.0066 Score=61.54 Aligned_cols=102 Identities=9% Similarity=-0.094 Sum_probs=71.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 006457 398 LSACSHAGLVQEGWHWLNTMGHEF--NIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEGM---------KVKADF-VV 461 (644)
Q Consensus 398 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 461 (644)
+..+...|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777765321 12222 456777888888888888888887765 234443 37
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhc-----cCCCCchhHHHH
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFE-----LEPNNCGYHVLL 499 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l 499 (644)
++.|...|...|++++|+.+++++++ +.|++|.+-..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 88888999999999999999999887 468877655443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.096 Score=58.18 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=79.9
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
......|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|..+. | |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~-------d---~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH-------D---LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT-------C---HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc-------C---hhhhHHHHHHcCCHHHHH
Confidence 34567899999999987764 56899999999999999999999999886 2 334445555567766666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYK 381 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (644)
.+-+.....| -++....+|.+.|++++|.+++.+ .+++++|..+-+.
T Consensus 728 ~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~------------------~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK------------------SQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH------------------cCChHHHHHHHHH
Confidence 6555555544 223444556667777777776544 4667777765543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.68 E-value=0.0063 Score=46.96 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhH
Q 006457 433 MVDLLGRAGKLKEAYDLIEGM-KVKA-DFV-VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
....+.+.|++++|.+.|++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667778888888888765 2334 456 777888888888888888888888888888887665
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.63 E-value=0.0034 Score=48.59 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=53.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhccCCCCch-hHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 465 LLGACRIHKNVDLGEIAAKKLFELEPNNCG-YHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 465 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677899999999999999999999999 99999999999999999999999987643
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.59 E-value=0.17 Score=40.47 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=102.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 006457 367 GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEA 446 (644)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (644)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+- .| ...+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHHH
Confidence 3457777888888877753 24455555665555555666666666666332 22 2457888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCc
Q 006457 447 YDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLA 525 (644)
Q Consensus 447 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 525 (644)
...+-.+.. +..-...-+......|..+.-.+++..++.-+|.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 887777753 44455667788889999999999999987777777899999999999999999999999999999985
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.091 Score=58.38 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=22.7
Q ss_pred HhcCCHHHHHH-HHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHH
Q 006457 234 ARGGHVDVSRK-VFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVF 277 (644)
Q Consensus 234 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 277 (644)
...+++++|.+ ++..++.+ .....++..+.+.|..++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecC
Confidence 34666777766 55443311 12255556666666666666543
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.42 E-value=0.015 Score=48.51 Aligned_cols=65 Identities=9% Similarity=-0.035 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhccC-C-CCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 457 ADFVVWGSLLGACRIHK---NVDLGEIAAKKLFELE-P-NNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
++..+...+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56667777777777766 5557888888887777 6 4456777777788888888888888887765
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.18 E-value=0.014 Score=54.33 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=68.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHhhccCCCC-chhHHHHHHHHhhc-CCchH
Q 006457 443 LKEAYDLIEGM-KVKAD---FVVWGSLLGACRI-----HKNVDLGEIAAKKLFELEPNN-CGYHVLLSNIYANA-GRWED 511 (644)
Q Consensus 443 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 511 (644)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666554 45665 5578888888877 599999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHhhCCCcCCC
Q 006457 512 VERTRSLMKNRRLAKTP 528 (644)
Q Consensus 512 a~~~~~~m~~~~~~~~~ 528 (644)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999876654334
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.79 E-value=0.23 Score=48.21 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHH
Q 006457 355 NVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHY 430 (644)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 430 (644)
+...|.++...+...|++++|+..++++...+ |+...|..+...+...|++++|.+.|++... +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 44555555555555566666666666666643 5555555555556666666666666665532 34554443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.78 E-value=0.045 Score=42.73 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHH
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM-----K----VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLL 499 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 499 (644)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555666666666555543 0 123456788888999999999999999999999999987665544
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.03 E-value=1.5 Score=37.51 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=68.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.... | +..+.-.|...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCHHHHH
Confidence 3456788999998888776 467789999999999999999999998885 2 344444555566666555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006457 311 CIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQM 351 (644)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (644)
.+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5544444433 1233333444566666666665544
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.95 E-value=0.086 Score=43.93 Aligned_cols=40 Identities=18% Similarity=-0.050 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHH
Q 006457 459 FVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVL 498 (644)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 498 (644)
...+-.|.-++.+.|++++|.+.++.+++++|++..+...
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3355567778889999999999999999999987554433
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.92 E-value=0.15 Score=38.61 Aligned_cols=70 Identities=11% Similarity=-0.027 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCc
Q 006457 424 EPGVEHYGCMVDLLGRAGK---LKEAYDLIEGM-KVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3456677777777755444 67888888776 3444 455666677788888888888888888888888743
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.76 E-value=5 Score=42.31 Aligned_cols=316 Identities=9% Similarity=-0.013 Sum_probs=159.4
Q ss_pred HhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhC-CCCCccHHHHHH
Q 006457 152 VQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRG-FDSEVGVGNTLI 230 (644)
Q Consensus 152 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li 230 (644)
.+.|++..+..+...+. ...+.| -..|..+....... ... ++...+.+.. .+.....-+.-+
T Consensus 17 ~~~~~~~~~~~l~~~l~------------~~pL~~-yl~y~~l~~~l~~~-~~~---ev~~Fl~~~~~~p~~~~Lr~~~l 79 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLK------------DYPLYP-YLEYRQITDDLMNQ-PAV---TVTNFVRANPTLPPARTLQSRFV 79 (618)
T ss_dssp HHTTCHHHHHHHSGGGT------------TSTTHH-HHHHHHHHHTGGGC-CHH---HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhhc------------CCCcHH-HHHHHHHHhCcccC-CHH---HHHHHHHHCCCChhHHHHHHHHH
Confidence 44577776666655543 222222 22444444333211 222 4444444432 122223445566
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHH--
Q 006457 231 DAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRL-- 308 (644)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~-- 308 (644)
..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+- ..| .........++..+.+.|.+..
T Consensus 80 ~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW-~~~-~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 80 NELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW-LTG-KSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-SCS-SCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hCC-CCCcHHHHHHHHHHHHCCCCCHHH
Confidence 778889999999998877 44455555567778888999888888888776 433 2344456667776665554322
Q ss_pred HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---hHHHHHHHHHhcCCHH
Q 006457 309 GKCIHDQVIKMD-----------LEESV-IVGTSIIDMYCKCGQVDLARKAFNQMKEKNVR---SWTAMIAGYGMHCRAR 373 (644)
Q Consensus 309 a~~i~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 373 (644)
...=+..+...| ++++. .....++..+.+ ...+....... .++.. .+..-+.-+++ .+.+
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHH
Confidence 111112222211 11111 111222222211 11112222111 11111 11112222333 3778
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 006457 374 EALDLFYKMIKAGVRPNYITFVS----VLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDL 449 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 449 (644)
.|..+|....+.+ ..+...... +.......+...++...+..... ..++.....-.+....+.|+++.|...
T Consensus 232 ~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 232 NARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888876543 223332222 22233334434556666665533 123333333444445577999999999
Q ss_pred HHhCCCCC-CHHHH-HHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHH
Q 006457 450 IEGMKVKA-DFVVW-GSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLS 500 (644)
Q Consensus 450 ~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 500 (644)
|+.|+..+ +..-| -=+..+....|+.++|...++++.+ +. ..|-.|+
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~lA 356 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMVA 356 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHHH
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHHH
Confidence 99886432 22222 2234566678888889988888875 32 4555553
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.52 E-value=0.16 Score=40.59 Aligned_cols=63 Identities=10% Similarity=-0.075 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCChhH---HHHHHHHhhccC-C-CCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 458 DFVVWGSLLGACRIHKNVDL---GEIAAKKLFELE-P-NNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..+-..+..++.+.++... ++.+++.+++.+ | ..-.....|+-++.+.|++++|++..+.+.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444443332 445555544443 3 223344444555555555555555555554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.22 E-value=2.1 Score=36.59 Aligned_cols=130 Identities=9% Similarity=-0.003 Sum_probs=93.9
Q ss_pred HHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHH
Q 006457 14 SNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGK 93 (644)
Q Consensus 14 ~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 93 (644)
..-...|+++.|.++.+++. +...|..|.....+.|+++-|.+.|..... |..+.-.+...|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44578899999999988873 557899999999999999999999998764 334444455567776666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhH
Q 006457 94 QAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFL 168 (644)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 168 (644)
.+-+.....| -++.....+.-.|+++++.++|.+... |.--+......|..+.|.++..++-
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r-------~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS-------LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC-------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC-------hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 6655555544 245555666678999999999988765 2222222333677788888888774
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.77 E-value=2.2 Score=34.32 Aligned_cols=125 Identities=11% Similarity=-0.055 Sum_probs=82.5
Q ss_pred HHHHHH--hhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHh----------------------cCCHHHHHHHHh
Q 006457 192 ASVLSA--CSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYAR----------------------GGHVDVSRKVFD 247 (644)
Q Consensus 192 ~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------------------~g~~~~A~~~~~ 247 (644)
..++.| ..-.|..+++.++.....++. +..-+|.+|--... ||++......+-
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGV 85 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHH
Confidence 334444 344688888888888877653 33334444433333 444444444443
Q ss_pred cCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 248 GMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
.+.. +....+..+......|+-++-.+++..+. .+.+|++.....+..||.+.|+..++.+++.++.+.|++
T Consensus 86 ~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INNT-LNEHVNKALDILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3322 33445666778888888888888888864 256778888888889999999999999888888887753
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.22 Score=53.52 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=50.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 466 LGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 466 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
...|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3566778999999999999999999999999999999999999999999999885
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.30 E-value=0.016 Score=57.67 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=156.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccC
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFV 186 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p 186 (644)
.+.+|..|..++.+.|.+.+|..-|- .. .|...|...|.+..+.|.+++-+..+...+ .. .-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaR------------k~--~k 114 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR------------KK--AR 114 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS------------TT--CC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHH------------HH--hc
Confidence 45567777777777777777765542 22 566677778888888888888777776543 22 23
Q ss_pred CHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCC----------------
Q 006457 187 DSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMI---------------- 250 (644)
Q Consensus 187 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------- 250 (644)
++..=+.++-+|++.+++.+.++.+. .|+..-...+.+-|...|.++.|.-+|..+.
T Consensus 115 e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGG
T ss_pred ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 33444567777777777665444331 4566566677777888888888887777662
Q ss_pred --------CCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Q 006457 251 --------EKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLE 322 (644)
Q Consensus 251 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 322 (644)
..++.+|-.+-.+|...+++.-|.-.--.+. +.|| -...++..|...|.+++-..+++.-.... .
T Consensus 188 ~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 188 AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp SSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 1367789999999999998877755444443 1122 11224445677788877777777655321 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------ChhhHHHHHHHHHhcCCHHHHHH
Q 006457 323 ESVIVGTSIIDMYCKCGQVDLARKAFNQMKE----K-------NVRSWTAMIAGYGMHCRAREALD 377 (644)
Q Consensus 323 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 377 (644)
....+|+-|.-.|+|- ++++-.+-++..-. | ....|.-++-.|.+..+++.|..
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5677888888888876 45555544443322 2 44579999999998888887653
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.14 E-value=12 Score=41.12 Aligned_cols=250 Identities=9% Similarity=-0.030 Sum_probs=124.9
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CCHh--HHHHHHHHHHHCCChhHHHHHHHHhHHcCC-CCCC---h--hhHHHHHHH
Q 006457 232 AYARGGHVDVSRKVFDGMIE----KDAV--TWNSIIAIYAQNGLAAEALDVFDQMVKSTD-VKCN---A--VTLSAVLLA 299 (644)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~---~--~t~~~ll~a 299 (644)
+....|+.+++..+++.... .+.. .-..+.-+.+..|..+++++++........ +.-+ . ..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888888888887654 2322 333444556677776778887777652221 1111 1 111122222
Q ss_pred H--HccccHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--hhhHHHHHHHHHhcCCH
Q 006457 300 I--AHLGVLRLGKCIHDQVIKMDLEESV--IVGTSIIDMYCKCGQVDLARKAFNQMKE-KN--VRSWTAMIAGYGMHCRA 372 (644)
Q Consensus 300 ~--~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~ 372 (644)
. ...++ +++...+..++...- +.. ...-+|.-.|...|+-+....++..+.+ .+ +.-.-++.-|+...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2 22233 344444444444221 111 1112333345566777777777665432 22 22223333445577888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 006457 373 REALDLFYKMIKAGVRPNYITF--VSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLI 450 (644)
Q Consensus 373 ~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (644)
+.+..+.+.+... ..|....- ..+..+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888887763 12222211 23345677888888777788888552 2223333333333344466666666776
Q ss_pred HhCCCCCCHHHHHH--HHHHHHhcCCh-hHHHHHHHHhh
Q 006457 451 EGMKVKADFVVWGS--LLGACRIHKNV-DLGEIAAKKLF 486 (644)
Q Consensus 451 ~~~~~~p~~~~~~~--ll~~~~~~g~~-~~a~~~~~~~~ 486 (644)
+.+....|..+-.. +.-+....|+. ..+...+..+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 65422223333222 22333333333 45666666664
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.09 E-value=1.2 Score=41.53 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=67.6
Q ss_pred cCCHHHHHHHHHhcCCCCh--hhHHHHHHH-HHhc--C------CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 006457 338 CGQVDLARKAFNQMKEKNV--RSWTAMIAG-YGMH--C------RAREALDLFYKMIKAGVRPN---YITFVSVLSACSH 403 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 403 (644)
.|+..+-.+.+.+....++ ..|..++.+ +... | ....|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 4444555555666554433 456666653 3332 2 24566666777666 3555 4466666666766
Q ss_pred c-----CCHHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 006457 404 A-----GLVQEGWHWLNTMGHEFNIEP--GVEHYGCMVDLLGRA-GKLKEAYDLIEGM 453 (644)
Q Consensus 404 ~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 453 (644)
. |+.++|.+.|++..+ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 778888888877744 445 366677777777763 7777777777665
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.06 E-value=1.6 Score=35.53 Aligned_cols=66 Identities=9% Similarity=-0.022 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhccCCC-CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 456 KADFVVWGSLLGACRIHKN---VDLGEIAAKKLFELEPN-NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.|+..+-..+..++.+..+ ..+++.+++.++...|. .-.....|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555556655543 44677777777776663 334555667777888888888887777765
No 237
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.01 E-value=0.31 Score=37.75 Aligned_cols=64 Identities=8% Similarity=-0.109 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccC-------CCCchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 458 DFVVWGSLLGACRIHKNVDLGEIAAKKLFELE-------PNNCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
+...+..+...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556678889999999999999999998753 34467789999999999999999999998875
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.87 E-value=1.2 Score=35.56 Aligned_cols=74 Identities=15% Similarity=-0.072 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHH
Q 006457 425 PGVEHYGCMVDLLGRAGKLKE---AYDLIEGM-KVK-A--DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHV 497 (644)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 497 (644)
|+..+--.+..++.+..+..+ ++.+++.. ... | .....-.|.-++.+.|+++.|.+.++.+++.+|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344444444444444444333 44444443 111 2 1223445667788888999999999999999998765444
Q ss_pred H
Q 006457 498 L 498 (644)
Q Consensus 498 ~ 498 (644)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.01 E-value=22 Score=39.25 Aligned_cols=267 Identities=14% Similarity=0.068 Sum_probs=130.3
Q ss_pred HHhCCChHHHHHHHhhCCCCC--CC--eecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCH-hhHH
Q 006457 118 YSKCGELSDARKLFDEIPQRI--RN--IVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDS-VAIA 192 (644)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~-~t~~ 192 (644)
....|+.+++..+++...... .+ +..-..+.-+....|..++++.++......... ..|-..+. ....
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~-------~~~~~~~~~ir~g 456 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSG-------TSGDEDVDVLLHG 456 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSS-------CCSCHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccc-------cccccccHHHHHH
Confidence 445677788888887765410 11 222333445566777767788877776522100 00100011 1111
Q ss_pred ---HHHHHhhcCCCchHHHHHHHHHHHhCCCCCccH----HHHHHHHHHhcCCHHHHHHHHhcCCC--CC-HhHHHHHHH
Q 006457 193 ---SVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGV----GNTLIDAYARGGHVDVSRKVFDGMIE--KD-AVTWNSIIA 262 (644)
Q Consensus 193 ---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~ 262 (644)
.+--++...++.+.. ..+..++.. .+..+ .-+|...|.-.|+-+....++..+.+ .+ +.-.-.+.-
T Consensus 457 AaLGLGla~~GS~~eev~-e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 457 ASLGIGLAAMGSANIEVY-EALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHSTTCCCHHHH-HHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHH-HHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 112223334443333 333333321 12111 12333345566777666666665422 22 222233444
Q ss_pred HHHHCCChhHHHHHHHHhHHcCCCCCChhhHH---HHHHHHHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006457 263 IYAQNGLAAEALDVFDQMVKSTDVKCNAVTLS---AVLLAIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCG 339 (644)
Q Consensus 263 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~---~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 339 (644)
++...|+.+.+..+.+.+. .. ..|. .-|. ++.-+|+..|+.....+++..+.... ..++.-...+.-+....|
T Consensus 533 Gll~~g~~e~~~~li~~L~-~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 533 ALINYGRQELADDLITKML-AS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHH-HC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSS
T ss_pred HhhhCCChHHHHHHHHHHH-hC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccC
Confidence 5557788888888888876 22 1122 2222 33446778888888887888877632 222222222222333467
Q ss_pred CHHHHHHHHHhcCC-CChhh--HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006457 340 QVDLARKAFNQMKE-KNVRS--WTAMIAGYGMHCRA-REALDLFYKMIKAGVRPNYITFVSVLSACS 402 (644)
Q Consensus 340 ~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 402 (644)
+.+.+.++++.+.+ .|... --++.-|....|.. .+|++++..+.. .+|..+-...+.++.
T Consensus 609 ~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 76667777765543 33322 22233333334433 567778888763 455554444444443
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.35 E-value=5.9 Score=45.55 Aligned_cols=166 Identities=7% Similarity=-0.002 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
....++..+.+.+..+-+.++..-.+. +...--.+..+|...|++++|.+.|.+. ..++..+......+
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~-------- 882 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVL-------- 882 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSH--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhh--------
Confidence 344566777788888888776655544 4444456677899999999999999887 34544332211100
Q ss_pred cHHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hhHHHHHHHHHhcCCHHH
Q 006457 305 VLRLGKCIHDQVIKM-D-LEESVIVGTSIIDMYCKCGQVDLARKAFNQM----KEKNV----RSWTAMIAGYGMHCRARE 374 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~ 374 (644)
.. ...+... . ...-..-|.-++..+-+.|.++.+.++-... ...+. ..|..+..++...|++++
T Consensus 883 --~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 883 --RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp --HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred --cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 00 0111111 0 1112234566777777777777766554322 22221 258888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006457 375 ALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQE 409 (644)
Q Consensus 375 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 409 (644)
|...+-.+..... -...+..++..++..|..+.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9988888776433 34556667777776666554
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.81 E-value=8.9 Score=38.64 Aligned_cols=161 Identities=7% Similarity=0.033 Sum_probs=95.4
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHHhcCCHHHHHHHHhcCC------CCC----HhHH
Q 006457 193 SVLSACSRVTVNGVTEGAHGFVIKRGFDSE-----VGVGNTLIDAYARGGHVDVSRKVFDGMI------EKD----AVTW 257 (644)
Q Consensus 193 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~----~~~~ 257 (644)
.+...+...|++..|..++..+...-...+ ..++...+..|...+++..|..++.++. .++ ..-+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 455667778999999998888755322222 2456777888999999999988887751 111 2346
Q ss_pred HHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHH-----HHHccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006457 258 NSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLL-----AIAHLGVLRLGKCIHDQVIKMDLEESVIVGTSII 332 (644)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~-----a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 332 (644)
..++..+...+++.+|...|.+..+......|...+..++. ......... -..+.....+...-++...+..|+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~-~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL-QNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSST-THHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHhhcccccccHHHHHHH
Confidence 66777888889999998888877532222233332222211 111111111 122222222222235667778888
Q ss_pred HHHHhc--CCHHHHHHHHHhcCCC
Q 006457 333 DMYCKC--GQVDLARKAFNQMKEK 354 (644)
Q Consensus 333 ~~~~~~--g~~~~A~~~~~~~~~~ 354 (644)
.+|... .+++.+.+.|.....+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhcc
Confidence 888764 3567777777665544
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.75 E-value=1.5 Score=36.04 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHccCCH------HHHHHHHHHHhhhcCCCCC
Q 006457 390 NYITFVSVLSACSHAGLV------QEGWHWLNTMGHEFNIEPG 426 (644)
Q Consensus 390 ~~~t~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~ 426 (644)
|..+|-..+.-..+.|++ ++.+++|++... .++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~ 52 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPD 52 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCcc
Confidence 455555555555555666 566666666544 34443
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.46 E-value=2.2 Score=34.29 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhccCCC-CchhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 457 ADFVVWGSLLGACRIHK---NVDLGEIAAKKLFELEPN-NCGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 457 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
|+..+-..+..++.+.. +..+|+.+++.+++.+|. .-.....|+-++.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444443 233566666666655552 234455566666666666666666666653
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.03 E-value=19 Score=34.33 Aligned_cols=138 Identities=10% Similarity=0.061 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh
Q 006457 110 VSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSV 189 (644)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~ 189 (644)
.|.++..-|.+.+++++|.+++-.-. ..+.+.|+...|-++-.-|..... ..++++|..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~--------~~~~~~~~~ 95 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFR--------QAGQRVDGA 95 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHH--------HHTCCCCHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHH--------HcCCCCCHH
Confidence 45567777889999999998765432 245566776655554432221100 567778887
Q ss_pred hHHHHHHHhhcCCCchH-----HHHHHHHHHHhC--CCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHH
Q 006457 190 AIASVLSACSRVTVNGV-----TEGAHGFVIKRG--FDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIA 262 (644)
Q Consensus 190 t~~~ll~~~~~~~~~~~-----a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 262 (644)
+...++..+.....-+- ..+...+-.+.| -.-|+.....+...|.+.+++.+|+..|---.+++...+..|+.
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence 77777777666554221 122222333344 23467777888888889999988888874322223356655554
Q ss_pred HHHHCC
Q 006457 263 IYAQNG 268 (644)
Q Consensus 263 ~~~~~g 268 (644)
-+...+
T Consensus 176 ew~~~~ 181 (336)
T 3lpz_A 176 EWYKQD 181 (336)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 444443
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.27 E-value=7.5 Score=29.19 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777766553 33332233445678999999999999999999999988755 456777788777778877
Q ss_pred cCCCCCHHHHHH
Q 006457 385 AGVRPNYITFVS 396 (644)
Q Consensus 385 ~g~~p~~~t~~~ 396 (644)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 666666644
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.64 E-value=22 Score=33.60 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh
Q 006457 110 VSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSV 189 (644)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~ 189 (644)
.|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++-.-|..... ..++++|..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~--------~~~~~~~~~ 93 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYD--------LAEVKVDDI 93 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHH--------HTTCCCSHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHH--------HcCCCCCHH
Confidence 556677788888999999988655322 45566776665554322221100 567777877
Q ss_pred hHHHHHHHhhcCCCc-----hHHHHHHHHHHHhCC--CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHH
Q 006457 190 AIASVLSACSRVTVN-----GVTEGAHGFVIKRGF--DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIA 262 (644)
Q Consensus 190 t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 262 (644)
....++..+...... ....+...+-.+.|- ..|+.....+...|.+.|++.+|+..|-.-...|...+..|+.
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 777777766553321 122233333333332 2367788888899999999999998876333235566666555
Q ss_pred HHHHC---CChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHH
Q 006457 263 IYAQN---GLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVI 317 (644)
Q Consensus 263 ~~~~~---g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 317 (644)
-+... |...++--..-+ .++. +...+++..|..++....
T Consensus 174 ~w~~~~~~~~~~e~dlf~~R---------------aVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTVAEFFSR---------------LVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHHHHHHHH---------------HHHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHHHHHH---------------HHHH-HHHhcCHHHHHHHHHHHH
Confidence 44444 444433221111 1222 334667777777776554
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.60 E-value=7 Score=29.30 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006457 305 VLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFYKMIK 384 (644)
Q Consensus 305 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (644)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|.. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777766553 33332233445678999999999999999999999988754 467888888888878887
Q ss_pred cCCCCCHHHHHH
Q 006457 385 AGVRPNYITFVS 396 (644)
Q Consensus 385 ~g~~p~~~t~~~ 396 (644)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 666666644
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.58 E-value=4.2 Score=33.43 Aligned_cols=107 Identities=14% Similarity=0.028 Sum_probs=63.1
Q ss_pred CCCCcchhHHHHHHHHHhcCCc------hHHHHHHhhcCC--CCC-cchHHHHHH------HHHcCCCchHHHHHHHHhh
Q 006457 1 MKLSKSSSVSSVVSNVDKHSTN------TNLTTLFNKYVD--KNN-VFSWNSVIA------DLARGGDSVEALRAFSSMR 65 (644)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~------~~A~~~f~~~~~--~p~-~~~~~~li~------~~~~~g~~~~a~~~~~~m~ 65 (644)
|.+.|.++|-..+...-+.|++ +..+.+|++... +|+ -..|..-|. .+...++.++|.++|+.++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3467778888888888888888 777777765421 121 112222222 1123378888888888887
Q ss_pred HCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCh
Q 006457 66 KLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDV 108 (644)
Q Consensus 66 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 108 (644)
...-+- ...|......=.+.|++..|++++...+..+..|..
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 642111 222222233335678888888888888887755443
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.87 E-value=6.6 Score=38.79 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hhcCCCCChhHH
Q 006457 360 TAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMG----HEFNIEPGVEHY 430 (644)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~~ 430 (644)
..++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|++.|+... .+.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566677788888887777776642 4467778888888888888888888777654 345777776543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.10 E-value=4.2 Score=30.66 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=48.0
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALID 116 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (644)
+.-+..+-++.+....+-|++....+.|++|.+.+++..|..+++-+...- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 445667777777778888999999999999999999999999998877543 233556766654
No 251
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.00 E-value=47 Score=35.14 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhCCCCC-CCeecHHHHHHHHHhC
Q 006457 109 FVSSALIDMYSKCGELSDARKLFDEIPQRI-RNIVSWTSMLTGYVQN 154 (644)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~ 154 (644)
.+|- +|-.+.|+|++++|.++.++..... .-...+-..+..|+..
T Consensus 154 p~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 3554 6677789999999999988775431 1124677777777743
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.73 E-value=6.1 Score=29.82 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 371 RAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 371 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.+..+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666666666777889999999999999999999999999998865433 33556776654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.73 E-value=1.7 Score=36.45 Aligned_cols=122 Identities=13% Similarity=0.023 Sum_probs=64.1
Q ss_pred cCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 006457 385 AGVRPNYI--TFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV-------EHYGCMVDLLGRAGKLKEAYDLIEGM-- 453 (644)
Q Consensus 385 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-- 453 (644)
.|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555443 34445666777788888877776654322333432 35566777788888888888777764
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHh
Q 006457 454 -----KVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMK 520 (644)
Q Consensus 454 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 520 (644)
+..|+. ..++. ..... ..-..+ +.+.....-++.+|.+.|++++|..+++.+.
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCc--ccccc----ccCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111111 10110 00000 000111 2334566779999999999999999988753
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.04 E-value=7.3 Score=32.67 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 331 IIDMYCKCGQVDLARKAFNQMK-----EKNV-------RSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
-+..+...|.++.|+-+.+.+. .+++ .+...+.+++...|++..|...|++.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455566667777666555433 1232 134445556666666666666666654
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.00 E-value=37 Score=33.27 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=25.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 006457 397 VLSACSHAGLVQEGWHWLNTMGHEFNIEPG----VEHYGCMVDLLGRAGKLKEAYDLIEG 452 (644)
Q Consensus 397 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (644)
+..-|...|++.+|..++..+.++..-..| .++|..-+.+|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344445555555555555554433211111 23334444455555555555544443
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.64 E-value=8.5 Score=41.42 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=30.5
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 006457 401 CSHAGLVQEGWHWLNTMGHEFNIEP-GVEHYGCMVDLLGRAGKLKEAYDLIEGMK 454 (644)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 454 (644)
|...|+++.|+++-++.+. ..| +-.+|..|...|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455666666666666533 233 35566666666666666666666666664
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.41 E-value=2.9 Score=41.42 Aligned_cols=67 Identities=13% Similarity=-0.036 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhh-----CCCcCCC
Q 006457 462 WGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKN-----RRLAKTP 528 (644)
Q Consensus 462 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 528 (644)
...++.++...|+.+++...++.++..+|-+...+..|..+|...|+..+|.+.|+...+ -|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344566677788888888888888888888888888888888888888888888887654 3665444
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.98 E-value=21 Score=41.08 Aligned_cols=166 Identities=10% Similarity=-0.013 Sum_probs=94.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhh
Q 006457 111 SSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVA 190 (644)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t 190 (644)
...++..+.+.+..+.|..+....+. +...--.+...|...|++++|.++|.+. ..++..+...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~ka-------------a~~~~~~~~l 878 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTT-------------SLVLYSHTSQ 878 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTC-------------CCSCTTCCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHH-------------hhhhcccchh
Confidence 33456667777888888887766654 4444445667889999999999999885 3333322111
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHhC-C-CCCccHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCH----hHHHHH
Q 006457 191 IASVLSACSRVTVNGVTEGAHGFVIKRG-F-DSEVGVGNTLIDAYARGGHVDVSRKVFDGM----IEKDA----VTWNSI 260 (644)
Q Consensus 191 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~l 260 (644)
... -.. ...+.... . ..-..-|..++..+.+.|.++.+.++-... ...+. ..|..+
T Consensus 879 ~~~-------------~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~i 944 (1139)
T 4fhn_B 879 FAV-------------LRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHET 944 (1139)
T ss_dssp CSS-------------HHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred hhh-------------hcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence 000 000 00111110 0 111234566666777777766665544322 22221 257778
Q ss_pred HHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHH
Q 006457 261 IAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLG 309 (644)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a 309 (644)
.+++...|++++|...+-.+. .... -...+..++..++..+..+.-
T Consensus 945 Fk~~L~l~~ye~Ay~aL~~~p-d~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 945 LKTACAAGKFDAAHVALMVLS-TTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCSGGGGHHHHHHH-HSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhhCCHHHHHHHHHhCC-CHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 888888888888888887775 3333 234555666666666655443
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.17 E-value=4.4 Score=37.08 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=31.0
Q ss_pred HHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCC
Q 006457 436 LLGRAGKLKEAYDLIEG-MKVKA-DFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNN 492 (644)
Q Consensus 436 ~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 492 (644)
.+.+.|.+++|++.... ++.+| |...-..|+..++..|+++.|..-++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34456666666555443 23333 33344445566666666666666666666666653
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.12 E-value=13 Score=29.86 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=43.3
Q ss_pred CchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006457 53 DSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALID 116 (644)
Q Consensus 53 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 116 (644)
+.-+..+-++.+....+-|++......|++|.+.+|+..|..+++-++..- .+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555666666667778888888888888888888888888888776543 333555665553
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.78 E-value=59 Score=30.89 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLF----YKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++- +-..+.++++|......|+..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 345666688899999999876542 33456667766655554 445567888998888777777665
Q ss_pred cCC--HHHHHHHHHHHh---hhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 006457 404 AGL--VQEGWHWLNTMG---HEFN--IEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVD 476 (644)
Q Consensus 404 ~g~--~~~a~~~~~~~~---~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (644)
... ++. ..+.+.++ .+.| -.-++.....+...|.+.|++.+|+.-|- .+..+.+..+..++.-+...+.
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 543 111 22222222 1223 23367888889999999999999998884 3334344566555554444332
Q ss_pred HHHHHHHHhhccCCCCchhHHH-HHHHHhhcCCchHHHHHHHHHhh
Q 006457 477 LGEIAAKKLFELEPNNCGYHVL-LSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 477 ~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
|.....|.. .+--|.-.|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222222 22236778899999888777654
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.71 E-value=88 Score=32.83 Aligned_cols=375 Identities=10% Similarity=0.000 Sum_probs=181.7
Q ss_pred HHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCcHH-
Q 006457 13 VSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDLHS- 91 (644)
Q Consensus 13 ~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~- 91 (644)
+..+++.++.......+.. +.. +...-.....+....|+..+|......+...| ...+.....++..+.+.|.+..
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~-~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~ 155 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPG-TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPL 155 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCS-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHhCCCHHHHHHhccC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHH
Confidence 4455666777777765554 312 44444456667777888777887777777665 3345666777777765554432
Q ss_pred -HHHHHHHHHHhC-----------CCCCh-hHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCee---cHHHHHHHHHhCC
Q 006457 92 -GKQAHQQAFIFG-----------FHRDV-FVSSALIDMYSKCGELSDARKLFDEIPQRIRNIV---SWTSMLTGYVQND 155 (644)
Q Consensus 92 -a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~~~g 155 (644)
..+=...+...| ++++. .....++..+. +...+........ ++.. .+..-+.-+++ .
T Consensus 156 ~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~~---~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTTG---ATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHSC---CCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhccC---CChhhHHHHHHHHHHHHh-c
Confidence 222222222222 11111 11122222221 2223333332222 1111 11122333333 3
Q ss_pred ChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHh--hHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 006457 156 NAREALLLFKEFLLEESECGGASENSDNVFVDSV--AIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAY 233 (644)
Q Consensus 156 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 233 (644)
+++.|...|..... .....+... ....+.......+....+...+...... ..+.....-.+...
T Consensus 229 d~~~A~~~~~~~~~-----------~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 229 DAENARLMIPSLAQ-----------AQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMA 295 (618)
T ss_dssp CHHHHHHHHHHHHH-----------HTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhh-----------ccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHH
Confidence 77899999988752 111222111 1222233344444244444444443332 23333444555556
Q ss_pred HhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHH
Q 006457 234 ARGGHVDVSRKVFDGMIEKD---AVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGK 310 (644)
Q Consensus 234 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 310 (644)
.+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|..+. . +. +|-.++.+ .++|..-..
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~----~~--~fYg~lAa-~~Lg~~~~~- 366 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM-Q----QR--GFYPMVAA-QRIGEEYEL- 366 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T----SC--SHHHHHHH-HHTTCCCCC-
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-c----CC--ChHHHHHH-HHcCCCCCC-
Confidence 67899999999999997642 2223335567788999999999999986 2 11 33333322 222211000
Q ss_pred HHHHHHHHhCCCC-chh-----HHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006457 311 CIHDQVIKMDLEE-SVI-----VGTSIIDMYCKCGQVDLARKAFNQMKE-KNVRSWTAMIAGYGMHCRAREALDLFYKMI 383 (644)
Q Consensus 311 ~i~~~~~~~~~~~-~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 383 (644)
. . ....+ ... ....-+..+...|....|...+..+.. .+......+.......|..+.++....+..
T Consensus 367 ~----~--~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~ 440 (618)
T 1qsa_A 367 K----I--DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (618)
T ss_dssp C----C--CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred C----C--CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 0 00000 000 111234456778888888887776543 333333344444456777777765554322
Q ss_pred HcCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh
Q 006457 384 KAGV----RPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVE 428 (644)
Q Consensus 384 ~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 428 (644)
..+. -|. .|..++...++.-.++..+- +.-+..+.++.|+..
T Consensus 441 ~~~~~~~~~P~--~y~~~i~~~a~~~gv~~~ll-~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 441 LWDHLEERFPL--AYNDLFKRYTSGKEIPQSYA-MAIARQESAWNPKVK 486 (618)
T ss_dssp CTTCHHHHSCC--TTHHHHHHHHTTSSSCHHHH-HHHHHHHHTTCTTCB
T ss_pred hhcchhhhCCc--chHHHHHHHHHHcCCCHHHH-HHHHHHhCCCCCCCc
Confidence 1110 011 24455555554444443322 112223346677654
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.60 E-value=24 Score=28.24 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGY 495 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 495 (644)
.+--|.-|+.+.|+++.|.+..+.+++.+|++..+
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 44456667777788888888888888888877443
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.50 E-value=15 Score=29.41 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 006457 374 EALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVD 435 (644)
Q Consensus 374 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 435 (644)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45556666666778899999999999999999999999999998654 3444667777664
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.22 E-value=39 Score=30.77 Aligned_cols=117 Identities=5% Similarity=0.007 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCchHHHHHHhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCccc--HHHHHHHHhc
Q 006457 11 SVVSNVDKHSTNTNLTTLFNKYVDK---NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRST--FPCAIKSCSA 85 (644)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~f~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~ 85 (644)
+.+...++.|+++....+++.-... .+..-++. +...+..|+.+ +++.+.+.|..|+... -.+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH-HHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 4566678889999888888764322 12222333 44445666653 4455556665554321 1123333344
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHhhCCC
Q 006457 86 LHDLHSGKQAHQQAFIFGFHRDVFV--SSALIDMYSKCGELSDARKLFDEIPQ 136 (644)
Q Consensus 86 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~ 136 (644)
.|+. ++.+.+++.|..++... ....+...+..|+.+-+..+++.-..
T Consensus 82 ~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 82 AGSV----KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HTCH----HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCH----HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 5554 45556666676554321 12234445567888777777766443
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.05 E-value=34 Score=27.79 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhH
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYH 496 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 496 (644)
..-.|.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 344566788899999999999999999999985443
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.26 E-value=26 Score=32.03 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=69.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh----HHHHHHHHHhhc
Q 006457 365 GYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVE----HYGCMVDLLGRA 440 (644)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~ 440 (644)
...+.|..++|++....-++.. +-|...-..++.-+|-.|+++.|..-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4556788888888887777753 44666666677778888888888887777743 345432 33333332
Q ss_pred CCHHHHHHHHHhC--C-CCCCHHHHHH-HHHHH--HhcCChhHHHHHHHHhhccCCCCc
Q 006457 441 GKLKEAYDLIEGM--K-VKADFVVWGS-LLGAC--RIHKNVDLGEIAAKKLFELEPNNC 493 (644)
Q Consensus 441 g~~~~A~~~~~~~--~-~~p~~~~~~~-ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 493 (644)
.... .++|..- | +--.+.-|.. |+.+. ...|+.+.|.++-.++++.-|..+
T Consensus 78 E~~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 AQAR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1111 1233321 1 1112223443 33444 356888888888888888766544
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.72 E-value=29 Score=26.03 Aligned_cols=86 Identities=10% Similarity=0.046 Sum_probs=59.8
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 202 TVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 202 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||.+.|-+|-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346677777777766553 33333333456778999999999999999999999977654 57788888888887775
Q ss_pred HcCCCCCChhhH
Q 006457 282 KSTDVKCNAVTL 293 (644)
Q Consensus 282 ~~~~~~p~~~t~ 293 (644)
..| .|....|
T Consensus 96 -~sg-~p~~q~F 105 (115)
T 2uwj_G 96 -GSS-DPALADF 105 (115)
T ss_dssp -TCS-SHHHHHH
T ss_pred -hCC-CHHHHHH
Confidence 444 3433333
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.12 E-value=67 Score=29.11 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=24.1
Q ss_pred cccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHH
Q 006457 303 LGVLRLGKCIHDQVIKMDLEESVI--VGTSIIDMYCKCGQVDLARKAFN 349 (644)
Q Consensus 303 ~~~~~~a~~i~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 349 (644)
.+.......+.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344333445556666666554432 12233444556677766666665
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.48 E-value=1.2e+02 Score=31.93 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=18.0
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC
Q 006457 437 LGRAGKLKEAYDLIEGMKVKAD 458 (644)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~~~p~ 458 (644)
+...|++++|++.+++.++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678999999999999877664
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=63.26 E-value=1.2e+02 Score=29.87 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=12.3
Q ss_pred HHHHHHhcCCchHHHHHHhh
Q 006457 12 VVSNVDKHSTNTNLTTLFNK 31 (644)
Q Consensus 12 l~~~~~~~~~~~~A~~~f~~ 31 (644)
.+..-++.|+.+-+..+++.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~ 36 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR 36 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHc
Confidence 34445566777766666654
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.23 E-value=74 Score=27.48 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 006457 324 SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCR 371 (644)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (644)
+..+-...+.++.+.|+.+....+.+.+..++...-...+.++...|.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333333444444444443333333333333444333334444444443
No 273
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.52 E-value=1.3e+02 Score=30.03 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhh-cCCCC--C--hh
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKA--GVRPN---YITFVSVLSACSHAGLVQEGWHWLNTMGHE-FNIEP--G--VE 428 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p--~--~~ 428 (644)
...|...|...|++.+|.+++.++... |..+. ...+...+..|...+++.+|..++.++... ....+ + ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355778888899999999999988743 22222 235666778889999999999999887421 12222 2 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.|.+++..+...+++.+|.+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788888999999999998887765
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.65 E-value=1.1e+02 Score=28.82 Aligned_cols=167 Identities=11% Similarity=-0.018 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDL----FYKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
|.++..=|.+.+++++|.+++..- ...+.++|+...|.++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345666688889999998886542 3345667887766665 4444566888888888777776655
Q ss_pred cCCHH-HHHHHHHHHh---hhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 006457 404 AGLVQ-EGWHWLNTMG---HEFNI--EPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIH---KN 474 (644)
Q Consensus 404 ~g~~~-~a~~~~~~~~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~---g~ 474 (644)
...-+ .=..+.+.++ .+.|- .-++.....+...|.+.|++.+|+.-|---. .-|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCC
Confidence 32111 1122222222 11222 2367888999999999999999998776321 11355555555544443 43
Q ss_pred hhHHHHHHHHhhccCCCCchhHHH-HHHHHhhcCCchHHHHHHHHHhh
Q 006457 475 VDLGEIAAKKLFELEPNNCGYHVL-LSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 475 ~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
..++ ..|.. .+--|.-.|+...|..+++...+
T Consensus 184 ~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3322 22221 12235678899999999887654
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.66 E-value=51 Score=24.80 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=59.5
Q ss_pred CCchHHHHHHHHHHHhCCCCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhH
Q 006457 202 TVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 202 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 281 (644)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||.+.|-+|-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 446777777777766553 33333333456778999999999999999999999977654 46677788887777775
Q ss_pred HcCCCCCChhhH
Q 006457 282 KSTDVKCNAVTL 293 (644)
Q Consensus 282 ~~~~~~p~~~t~ 293 (644)
..| .|....|
T Consensus 97 -~sg-~p~~q~F 106 (116)
T 2p58_C 97 -RSQ-DPRIQTF 106 (116)
T ss_dssp -TCC-CHHHHHH
T ss_pred -hCC-CHHHHHH
Confidence 433 3443333
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.96 E-value=89 Score=26.68 Aligned_cols=153 Identities=11% Similarity=0.080 Sum_probs=67.2
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHH
Q 006457 221 SEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAI 300 (644)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~ 300 (644)
+|..+-...+..+.+.|..+....+.+.+..++...-...+.++...|.. ++...+..+. . .++...-...+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l-~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKAL-K---DEDGWVRQSAAVAL 100 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT-T---CSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHH-c---CCCHHHHHHHHHHH
Confidence 34444444444555555433344444444455555555555555555543 3333333333 1 24555555555555
Q ss_pred HccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006457 301 AHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLFY 380 (644)
Q Consensus 301 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (644)
.+.++.+....+.. +. -.++..+-...+.++++.|..+....+...+..++...-...+.++...|. .++...+.
T Consensus 101 ~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 101 GQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 55554322222222 11 134444444555555555544333333333333444444444444444443 23344444
Q ss_pred HHH
Q 006457 381 KMI 383 (644)
Q Consensus 381 ~m~ 383 (644)
++.
T Consensus 176 ~~l 178 (201)
T 3ltj_A 176 KLA 178 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.91 E-value=36 Score=33.95 Aligned_cols=91 Identities=5% Similarity=-0.044 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC--CCCch----hHH
Q 006457 429 HYGCMVDLLGRAGKLKEAYDLIEGMK-----VKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELE--PNNCG----YHV 497 (644)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~~~ 497 (644)
+...+.+.|.+.|++++|.+.+.++. ..--...+-..+..+...+|+..+...++++..+. ..++. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 34445555555555555555555541 11122344445555555555555555555554321 11111 112
Q ss_pred HHHHHHhhcCCchHHHHHHHHH
Q 006457 498 LLSNIYANAGRWEDVERTRSLM 519 (644)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~m 519 (644)
.-+.++...++|.+|.+.|-..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233344556666666555443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.30 E-value=52 Score=32.79 Aligned_cols=54 Identities=11% Similarity=0.048 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006457 329 TSIIDMYCKCGQVDLARKAFNQMKEK------NVRSWTAMIAGYGMHCRAREALDLFYKM 382 (644)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (644)
..+.+.|.++|+++.|.+.|.++... -+..+-..|..+...+++..+...+.+.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34555555555555555555554321 1123334444444444444444444443
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=56.86 E-value=86 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCCCccHH--HHHHHHHHhcCCHHHHHH
Q 006457 208 EGAHGFVIKRGFDSEVGVG--NTLIDAYARGGHVDVSRK 244 (644)
Q Consensus 208 ~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~ 244 (644)
.++.+.+++.|..++.... .+-+....+.|+.+-+.-
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 4556666666655543221 122333444455544433
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.68 E-value=52 Score=32.58 Aligned_cols=109 Identities=8% Similarity=0.065 Sum_probs=49.5
Q ss_pred HHcCCCchHHHHHHHHhhHCCCCCCccc--HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCC
Q 006457 48 LARGGDSVEALRAFSSMRKLSLTPTRST--FPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVF--VSSALIDMYSKCGE 123 (644)
Q Consensus 48 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 123 (644)
.+..|+.+ +++.+.+.|..|+... ..+.+...+..|+.+ +.+.+++.|..++.. .....+...++.|+
T Consensus 21 Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 21 ASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 34556654 3444445565554322 223444445556654 444444555444321 11223444456677
Q ss_pred hHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHHHHHH
Q 006457 124 LSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREALLLFK 165 (644)
Q Consensus 124 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 165 (644)
.+-+.-+++.-... ..+...++. +...+..|+.+-+..+++
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh
Confidence 77666666653321 112222222 333445566555544443
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=54.48 E-value=1.2e+02 Score=28.40 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCC
Q 006457 449 LIEGMKVKADF--VVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRR 523 (644)
Q Consensus 449 ~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 523 (644)
+|...+.+|.. .+..+-++.+.+++|+..|....++++++.|... ..++|.+++..-.+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 35555666643 3667778888999999999999999999998632 2356777777766543
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.46 E-value=1e+02 Score=26.96 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=10.6
Q ss_pred HHHhcCCchHHHHHHhh
Q 006457 15 NVDKHSTNTNLTTLFNK 31 (644)
Q Consensus 15 ~~~~~~~~~~A~~~f~~ 31 (644)
..++.|+++....+++.
T Consensus 15 ~A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 15 KATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHc
Confidence 34566777766666654
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.34 E-value=1.2e+02 Score=26.11 Aligned_cols=171 Identities=11% Similarity=0.066 Sum_probs=102.6
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHH
Q 006457 220 DSEVGVGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLA 299 (644)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a 299 (644)
.++..+-...+..+.+.|..+....+.+.+..+|...-...+.++...+.. ++...+..+. . .++...-...+.+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l-~---~~~~~vr~~a~~a 104 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKAL-K---DEDGWVRQSAAVA 104 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHT-T---CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHH-c---CCCHHHHHHHHHH
Confidence 345555555666666666644445555555667776666677777777764 3445454544 2 3566666777777
Q ss_pred HHccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006457 300 IAHLGVLRLGKCIHDQVIKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREALDLF 379 (644)
Q Consensus 300 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (644)
+.+.++.+....+. .+. -.++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+
T Consensus 105 L~~~~~~~~~~~L~-~~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L 179 (211)
T 3ltm_A 105 LGQIGDERAVEPLI-KAL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 179 (211)
T ss_dssp HHHHCCGGGHHHHH-HHT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHhCcHHHHHHHH-HHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 77777654333333 232 256777777788888888876555555555556676666666777777765 4566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc
Q 006457 380 YKMIKAGVRPNYITFVSVLSACSH 403 (644)
Q Consensus 380 ~~m~~~g~~p~~~t~~~ll~a~~~ 403 (644)
.++.+. ++...-...+.++..
T Consensus 180 ~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 180 EKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHhC---CCHHHHHHHHHHHHh
Confidence 666653 344444444444443
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=48.25 E-value=1.4e+02 Score=25.94 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=66.7
Q ss_pred HHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCChhHHHHHHHHhhc--cCCCCchhHHHHHHHHhhcCCchHHHHHHHH
Q 006457 445 EAYDLIEGMK-VKADFV---VWGSLLGACRIHKNVDLGEIAAKKLFE--LEPNNCGYHVLLSNIYANAGRWEDVERTRSL 518 (644)
Q Consensus 445 ~A~~~~~~~~-~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (644)
.+...|...+ .+-|+. .|-..+..| ..++...+..+|+.|.. ++-.-+..|...+..+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444432 333443 444444443 23445678888888865 4566678899999999999999999999988
Q ss_pred HhhCCCcCCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccC
Q 006457 519 MKNRRLAKTPGFSLVELRGKVHAFLVGDKEHPQHEKIYEYLEELNVKLQEVGYVTD 574 (644)
Q Consensus 519 m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~~~~~g~~p~ 574 (644)
=.+++-. | ...+.+...+...+|.+.+++-|
T Consensus 141 GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 141 GAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 7765532 2 23344555667777877776433
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.23 E-value=1.3e+02 Score=26.22 Aligned_cols=55 Identities=9% Similarity=-0.070 Sum_probs=32.7
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCCCCccH--HHHHHHHHHhcCCHHHHHHHHhcC
Q 006457 195 LSACSRVTVNGVTEGAHGFVIKRGFDSEVGV--GNTLIDAYARGGHVDVSRKVFDGM 249 (644)
Q Consensus 195 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 249 (644)
|...+..|+.+..+.+++.+.+.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3444556778877777777766665544321 223445555677777666666543
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.61 E-value=35 Score=30.84 Aligned_cols=86 Identities=10% Similarity=-0.081 Sum_probs=45.1
Q ss_pred HHcCCCchHHHHHHHHhhHCCCCCCccc-------HHHHHHHHh--ccCCcHHHHHHHHHHHHhC---------CC-CCh
Q 006457 48 LARGGDSVEALRAFSSMRKLSLTPTRST-------FPCAIKSCS--ALHDLHSGKQAHQQAFIFG---------FH-RDV 108 (644)
Q Consensus 48 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~-~~~ 108 (644)
.++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-++.+++.-...+ +. .|.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 3456777777777777666665555332 233333332 4566666666665543311 00 011
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhC
Q 006457 109 FVSSALIDMYSKCGELSDARKLFDEI 134 (644)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~~ 134 (644)
.-.+ .+...+..|+.+-+.-+++.-
T Consensus 92 ~g~t-~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 92 RGQT-ALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp ESBC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCC-HHHHHHHcCCHHHHHHHHhCC
Confidence 1222 334445668877777777653
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.41 E-value=94 Score=24.68 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKNV---RSWTAMIAGYGMHCR--AREALDLFYKMIKAGVRPNYI 392 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 392 (644)
.+.++.-|...|+.++|.+.++++..|.. .....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45678888889999999999998876632 334455555555432 355677777777766544333
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.80 E-value=90 Score=30.04 Aligned_cols=64 Identities=11% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHHCCC--hhHHHHHHHHhHHcCCCCCChh
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGMIEKD---AVTWNSIIAIYAQNGL--AAEALDVFDQMVKSTDVKCNAV 291 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~p~~~ 291 (644)
+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+. ..++-+...
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~-~~glls~~q 289 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCCCHHH
Confidence 567888888999999999999987663 3345555555554433 345677777777 555444433
No 289
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.89 E-value=1.1e+02 Score=26.38 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHH
Q 006457 443 LKEAYDLIEGMKVKADFV-------VWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNI 502 (644)
Q Consensus 443 ~~~A~~~~~~~~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 502 (644)
++.|+.+++.++..-|.. .--..+..|.+.|.+++|.+++++.++..|.+...-.-|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 456777777774332311 112334678889999999999999888776665544444443
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.50 E-value=2.3e+02 Score=31.55 Aligned_cols=128 Identities=9% Similarity=-0.040 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccH
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVL 306 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~ 306 (644)
..++..+...|..+-|.++..-++. ++..--.+..+|...|++++|...|++. ..|+..+.......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA--A~gl~~~~~~~~~~---------- 880 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVL---------- 880 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCTTCSSCCSCGGG----------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhcccCcccccch----------
Confidence 3477788889999988887776665 4444446778899999999999999988 45654433221100
Q ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCh----hhHHHHHHHHHhcC
Q 006457 307 RLGKCIHDQVIKMDL-EESVIVGTSIIDMYCKCGQVDLARKAFNQ----MKEKNV----RSWTAMIAGYGMHC 370 (644)
Q Consensus 307 ~~a~~i~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g 370 (644)
+....++. .... .....-|..++..+-+.+.++.+.++-+. +...|. ..|+.+..+.+..|
T Consensus 881 ~~~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00001110 0000 11223567778888888888777655443 222233 35777777766544
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.95 E-value=1.7e+02 Score=25.31 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 006457 306 LRLGKCIHDQVIKMDLEE-SVIVGTSIIDMYCKCGQVDLARKAFNQMKEKNVR 357 (644)
Q Consensus 306 ~~~a~~i~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 357 (644)
......+|..|...|+-. -...|......+...|++.+|.++|+.-.+.+..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 456666666666655433 2334555555566666666666666655444333
No 292
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=41.15 E-value=47 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCccc
Q 006457 550 PQHEKIYEYLEELNVKLQEVGYVTDMTSV 578 (644)
Q Consensus 550 ~~~~~i~~~~~~l~~~~~~~g~~p~~~~~ 578 (644)
++..+|...+++-..+++..|+.||...+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 34567788888889999999999999876
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.38 E-value=35 Score=25.62 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=17.4
Q ss_pred CchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCc
Q 006457 21 TNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDS 54 (644)
Q Consensus 21 ~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~ 54 (644)
+.+.|+++++.++.+ ...+|..++.++...|+.
T Consensus 52 ~~~~ar~Lld~L~~r-G~~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETR-GSQALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTS-CTTHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHc-ChHHHHHHHHHHHHcCcH
Confidence 345555555555555 444555555555544443
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.88 E-value=3e+02 Score=27.47 Aligned_cols=129 Identities=13% Similarity=0.077 Sum_probs=74.8
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006457 317 IKMDLEESVIVGTSIIDMYCKCGQVDLARKAFNQMKE---KNVRSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYIT 393 (644)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 393 (644)
.+.|++--...|.--.+.+...|++++|.++--.-+. ++..|.+.+-..-...|+..-.+.+|.-+.+.| +.+..-
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~E 431 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYE 431 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHH
Confidence 4456665555666666777788888888887766654 344444444443344556666677777777766 455543
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 006457 394 FVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGVEHYGCMVDLLGRAGKLKEAYDLIEGMKV 455 (644)
Q Consensus 394 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 455 (644)
=.-+.+.-...|+.+-..+++.+ -.+..+.+.-. .. +..+..-|+.+|.+...
T Consensus 432 SlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGD----lv-k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 432 SLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGD----LV-KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHH----HH-HHHCSHHHHHHHHHHCC
T ss_pred hhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHh----hh-hhcCHHHHHHHHHHcCC
Confidence 33445555556665555444433 35555554332 22 44566677777776643
No 295
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=37.74 E-value=9.3 Score=22.92 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=12.7
Q ss_pred cCCccccc-ccccccCCCC
Q 006457 626 DSKRFHYF-KDGLCSCGDY 643 (644)
Q Consensus 626 ~~~~~h~~-~~g~~~~~~~ 643 (644)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34444555 6899999976
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.67 E-value=86 Score=25.78 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH
Q 006457 328 GTSIIDMYCKCGQVDLARKAFNQMKEKNV---RSWTAMIAGYGMHCR--AREALDLFYKMIKAGVRPNY 391 (644)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 391 (644)
.+.++.-|...|+.++|.+.++++..|.. ....++..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45678888888999999999998876632 344445555555332 34566777777766654433
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.35 E-value=2e+02 Score=24.82 Aligned_cols=17 Identities=0% Similarity=-0.046 Sum_probs=7.7
Q ss_pred HHHhCCChHHHHHHHhh
Q 006457 117 MYSKCGELSDARKLFDE 133 (644)
Q Consensus 117 ~~~~~g~~~~A~~~~~~ 133 (644)
..++.|+.+-+..+++.
T Consensus 48 ~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 48 WAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 33444555444444443
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.61 E-value=1.8e+02 Score=24.46 Aligned_cols=120 Identities=12% Similarity=0.035 Sum_probs=52.0
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCccH--HHHHHHHHHhcCCHHHHHHHHhcCC-C---CCHhHHHHHHHHHHHCCChhH
Q 006457 199 SRVTVNGVTEGAHGFVIKRGFDSEVGV--GNTLIDAYARGGHVDVSRKVFDGMI-E---KDAVTWNSIIAIYAQNGLAAE 272 (644)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~ 272 (644)
+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-. . .|..-++. +...+..|+.+-
T Consensus 47 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~ 121 (201)
T 3hra_A 47 VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDN 121 (201)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHH
T ss_pred HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHH
Confidence 3445544 4444556666554322 1233445566778777777774431 1 12222222 223345566554
Q ss_pred HHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCCc
Q 006457 273 ALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEES 324 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 324 (644)
+..+++.-. ..--..|..-.+.+..++........-.++.+.+.+.|..++
T Consensus 122 v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 122 VKLLLEDGR-EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHCC-CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCC-CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 444443321 001112222233333343322222223455556666665544
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.28 E-value=1e+02 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=20.0
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 006457 424 EPGVEHYGCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
.++.......+..+.|.|+-++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 444555566667777788888887776543
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.95 E-value=1.1e+02 Score=27.94 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=4.6
Q ss_pred hCCChHHHHHHH
Q 006457 120 KCGELSDARKLF 131 (644)
Q Consensus 120 ~~g~~~~A~~~~ 131 (644)
..|+.+-+..++
T Consensus 71 ~~g~~~~v~~Ll 82 (285)
T 3kea_A 71 TLEDTKIVKILL 82 (285)
T ss_dssp TSSSCHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 334443333333
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.26 E-value=1.3e+02 Score=27.58 Aligned_cols=90 Identities=7% Similarity=-0.061 Sum_probs=42.5
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHH
Q 006457 434 VDLLGRAGKLKEAYDLIEGMKVKADFVVWGSLLGACRIHKNVDLGEIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVE 513 (644)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 513 (644)
+...+..|+.+-+.-+++.-....+...-.+.+......|+.+....+++.-...+..+..........-+..|. .
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~----~ 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD----I 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC----H
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC----H
Confidence 344455677666655555443222221223344444567787777777766544442221111110111223344 3
Q ss_pred HHHHHHhhCCCcCC
Q 006457 514 RTRSLMKNRRLAKT 527 (644)
Q Consensus 514 ~~~~~m~~~~~~~~ 527 (644)
++.+.+.+.|..+.
T Consensus 209 ~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 209 EMLQALFKYDINIY 222 (285)
T ss_dssp HHHHHHTTSCBCST
T ss_pred HHHHHHHHcCCCCC
Confidence 45566667776443
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.12 E-value=2.5e+02 Score=25.27 Aligned_cols=242 Identities=13% Similarity=0.009 Sum_probs=0.0
Q ss_pred CCCCcchhHHHHHHHHHhcCCchHHHHHHhhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhh--HCCCCCCcccHHH
Q 006457 1 MKLSKSSSVSSVVSNVDKHSTNTNLTTLFNKYVDKNNVFSWNSVIADLARGGDSVEALRAFSSMR--KLSLTPTRSTFPC 78 (644)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~~~~~~~ 78 (644)
+..+++..-..-+..+.+.+..+....+...+..+ +...-...+.++.+.|....+..-+-.+. ..--.++...-..
T Consensus 32 L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~ 110 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHH
Q ss_pred HHHHHhccC--CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCC-
Q 006457 79 AIKSCSALH--DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQND- 155 (644)
Q Consensus 79 ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g- 155 (644)
.+.++...+ +......+...+.+.=-.++..+-...+.++.+.|+.+....+.+.+.. ++...-...+.++.+.+
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD--PNGDVRNWAAFAININKY 188 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTC--SSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHhhcc
Q ss_pred -ChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 006457 156 -NAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVGVGNTLIDAYA 234 (644)
Q Consensus 156 -~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 234 (644)
...-.-.+...+. .++..+-...+.++.
T Consensus 189 ~~~~~~~~L~~~l~---------------------------------------------------d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 189 DNSDIRDCFVEMLQ---------------------------------------------------DKNEEVRIEAIIGLS 217 (280)
T ss_dssp CCHHHHHHHHHHTT---------------------------------------------------CSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhc---------------------------------------------------CCCHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc
Q 006457 235 RGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH 302 (644)
Q Consensus 235 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~ 302 (644)
+.|+.+....+...+..++ .-...+.++.+.|. .+++..+.++. .-.++.......+.+..+
T Consensus 218 ~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l---~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 218 YRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTML---YKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHH---TTSSCCHHHHHHHHHHTC
T ss_pred HhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHH---hcCCCcHHHHHHHHHhhc
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.57 E-value=1.7e+02 Score=26.13 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=15.4
Q ss_pred HHHHHHHCCChhHHHHHHHHhH
Q 006457 260 IIAIYAQNGLAAEALDVFDQMV 281 (644)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~m~ 281 (644)
-+..+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4566777777888877777654
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.88 E-value=2.4e+02 Score=24.40 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=9.8
Q ss_pred cCCCchHHHHHHHHhhHCCCC
Q 006457 50 RGGDSVEALRAFSSMRKLSLT 70 (644)
Q Consensus 50 ~~g~~~~a~~~~~~m~~~g~~ 70 (644)
+.|+.+....+++.+.+.|..
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCC
Confidence 445555444444444444433
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.35 E-value=1.9e+02 Score=22.89 Aligned_cols=63 Identities=11% Similarity=0.246 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHCCC--hhHHHHHHHHhHHcCCCCCC
Q 006457 226 GNTLIDAYARGGHVDVSRKVFDGMIEK---DAVTWNSIIAIYAQNGL--AAEALDVFDQMVKSTDVKCN 289 (644)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~p~ 289 (644)
.+.++.=|...|+.++|.+.++++..| ..++...+..++-+.++ .+.+..++..+. ..|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~-~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HCCCcCH
Confidence 356788888889999999999998765 23344555555555432 355667777776 5554433
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.19 E-value=1.2e+02 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=10.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHh
Q 006457 259 SIIAIYAQNGLAAEALDVFDQM 280 (644)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~m 280 (644)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555554444
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.72 E-value=3.2e+02 Score=25.47 Aligned_cols=183 Identities=10% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCCcc
Q 006457 145 TSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIASVLSACSRVTVNGVTEGAHGFVIKRGFDSEVG 224 (644)
Q Consensus 145 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 224 (644)
..+|.-|...|+.++|...++++. .....|.......-+..=.+...-+.+-.++..+. .++-+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~------------~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~ 73 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLN------------LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTD 73 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC------------CGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC------------CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHH
Q ss_pred HHHHHHHHHHhcCCHH-------------HHHHHHhcCCCCCH-------------------------------------
Q 006457 225 VGNTLIDAYARGGHVD-------------VSRKVFDGMIEKDA------------------------------------- 254 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~-------------~A~~~~~~~~~~~~------------------------------------- 254 (644)
+...+...+....++. -|..+.+....+..
T Consensus 74 i~~gf~~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~W 153 (307)
T 2zu6_B 74 VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVW 153 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSS
T ss_pred HHHHHHHHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhc
Q ss_pred -------------hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHc--cccHHHHHHHHHHHHHh
Q 006457 255 -------------VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAH--LGVLRLGKCIHDQVIKM 319 (644)
Q Consensus 255 -------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~ 319 (644)
...+.++.-|...|+.++|.+.++++ .....-..+....+..+.-+ ....+....++..+.+.
T Consensus 154 G~~~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL--~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 154 GSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKEL--EVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp CCCSTTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH--CCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHc--CCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Q ss_pred CCCCchhHHHHHHHHHHhcCCHH
Q 006457 320 DLEESVIVGTSIIDMYCKCGQVD 342 (644)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~g~~~ 342 (644)
|+-+.......+...+....++.
T Consensus 232 ~~ls~~q~~~Gf~~vl~~l~Dl~ 254 (307)
T 2zu6_B 232 STITVDQMKRGYERIYNEIPDIN 254 (307)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHhh
No 308
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=31.45 E-value=1.5e+02 Score=27.17 Aligned_cols=24 Identities=8% Similarity=-0.083 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHhcCCchHHHHHH
Q 006457 6 SSSVSSVVSNVDKHSTNTNLTTLF 29 (644)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~A~~~f 29 (644)
+....+.+...+..|+.++..++.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~ 35 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSK 35 (285)
T ss_dssp ------------------------
T ss_pred chHHHHHHHHHhhcCCCCCcccCC
Confidence 344455667777778777776644
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.65 E-value=1.6e+02 Score=25.44 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=10.1
Q ss_pred HHHHHhcCCchHHHHHHhh
Q 006457 13 VSNVDKHSTNTNLTTLFNK 31 (644)
Q Consensus 13 ~~~~~~~~~~~~A~~~f~~ 31 (644)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444555566655555544
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.61 E-value=1.6e+02 Score=25.48 Aligned_cols=28 Identities=7% Similarity=-0.097 Sum_probs=18.3
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCCC
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGFDS 221 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 221 (644)
.+...+..++.+.+.++.+.+.+.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3444556677777777777777776543
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.42 E-value=90 Score=31.69 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh--hHH-HHHHHHHhhcCCHHHHHHHHHhC
Q 006457 391 YITFVSVLSACSHAGLVQEGWHWLNTMGHEFNIEPGV--EHY-GCMVDLLGRAGKLKEAYDLIEGM 453 (644)
Q Consensus 391 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 453 (644)
...++.+++.|.+.+.+++|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456777777888888888888877762100001111 112 23455666677888887776654
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.22 E-value=2.7e+02 Score=26.33 Aligned_cols=90 Identities=9% Similarity=-0.043 Sum_probs=42.0
Q ss_pred HHHHHHhcCCchHHHHHHhhcCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccHHHHHHHHhccCCc
Q 006457 12 VVSNVDKHSTNTNLTTLFNKYVDK--NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTFPCAIKSCSALHDL 89 (644)
Q Consensus 12 l~~~~~~~~~~~~A~~~f~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 89 (644)
.+..-+..|+.+.+..+++.=... .|..-++.|..+ +..|+.+ +++.+.+.|..++...-.+.+...+..|+.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA-CKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH-HHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 445555667777777776542111 133333444333 3344443 333334444444432222334444455666
Q ss_pred HHHHHHHHHHHHhCCCC
Q 006457 90 HSGKQAHQQAFIFGFHR 106 (644)
Q Consensus 90 ~~a~~~~~~~~~~g~~~ 106 (644)
+-++.+++.....|..+
T Consensus 98 ~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 98 DLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHhccccCCCH
Confidence 66666655544445433
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.83 E-value=83 Score=23.48 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 006457 339 GQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREAL 376 (644)
Q Consensus 339 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (644)
...+.|.++++.++.++...|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888999999998888889999999888777765544
No 314
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.30 E-value=2.3e+02 Score=22.74 Aligned_cols=86 Identities=5% Similarity=-0.096 Sum_probs=41.1
Q ss_pred HHHHHHhcCCchHHHHHHhhcCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcccH--HHHHHHHhcc
Q 006457 12 VVSNVDKHSTNTNLTTLFNKYVDKN---NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRSTF--PCAIKSCSAL 86 (644)
Q Consensus 12 l~~~~~~~~~~~~A~~~f~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~ 86 (644)
.+...++.|+.+....+++.-+..+ +..-++.|..+ +..|+. ++++.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-AGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH-HHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH-HHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 3445567788888888876533211 22223444433 355553 344455555655543321 1223333344
Q ss_pred CCcHHHHHHHHHHHHhCCCC
Q 006457 87 HDLHSGKQAHQQAFIFGFHR 106 (644)
Q Consensus 87 ~~~~~a~~~~~~~~~~g~~~ 106 (644)
++.+ +.+.+++.|..+
T Consensus 86 ~~~~----~v~~Ll~~g~~~ 101 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVV 101 (165)
T ss_dssp TCHH----HHHHHHHTTCCT
T ss_pred CcHH----HHHHHHhCCCCC
Confidence 4443 344444555444
No 315
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.85 E-value=2.5e+02 Score=24.25 Aligned_cols=17 Identities=0% Similarity=-0.159 Sum_probs=8.4
Q ss_pred HccccHHHHHHHHHHHH
Q 006457 301 AHLGVLRLGKCIHDQVI 317 (644)
Q Consensus 301 ~~~~~~~~a~~i~~~~~ 317 (644)
...|+...+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555444
No 316
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.81 E-value=3.7e+02 Score=24.92 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCCccH--HHHHHHHHHhcCCHHHHHHHHhc
Q 006457 208 EGAHGFVIKRGFDSEVGV--GNTLIDAYARGGHVDVSRKVFDG 248 (644)
Q Consensus 208 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 248 (644)
..+.+.+++.|..++... ..+-+...+..|..+....+++.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 344455566665554321 12234455566777766666653
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.42 E-value=1.3e+02 Score=30.46 Aligned_cols=59 Identities=19% Similarity=0.094 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCC-------chhHHHHHHHHhhcCCchHHHHHHHHHhh
Q 006457 461 VWGSLLGACRIHKNVDLGEIAAKKLFELEPNN-------CGYHVLLSNIYANAGRWEDVERTRSLMKN 521 (644)
Q Consensus 461 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 521 (644)
.+|.++..|...+.++.|..+..+.. .|.+ ..++..++.++.-.++|.+|.+.+....+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45555555555555555555555543 2211 23455667777788888888777776654
No 318
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.18 E-value=2.9e+02 Score=23.18 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccc
Q 006457 225 VGNTLIDAYARGGHVDVSRKVFDGMIEKDAVTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLG 304 (644)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~ 304 (644)
+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+..+. . .++...-...+.++...|
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l-~---d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKAL-K---DEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHT-T---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHH-c---CCCHHHHHHHHHHHHHhC
Confidence 3333344444444433233333333344444444444444444432 3333333333 1 234444444555555544
Q ss_pred c
Q 006457 305 V 305 (644)
Q Consensus 305 ~ 305 (644)
.
T Consensus 167 ~ 167 (201)
T 3ltj_A 167 G 167 (201)
T ss_dssp S
T ss_pred c
Confidence 4
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.10 E-value=2.7e+02 Score=22.79 Aligned_cols=47 Identities=4% Similarity=-0.078 Sum_probs=37.5
Q ss_pred HHHHHHHhhcc--CCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 478 GEIAAKKLFEL--EPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 478 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
+..+|+.+... .-.-+..|...+..+...|++.+|.++++.=.+++-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 77788877664 456677888999999999999999999988776553
No 320
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.06 E-value=74 Score=16.32 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006457 552 HEKIYEYLEELNVKLQE 568 (644)
Q Consensus 552 ~~~i~~~~~~l~~~~~~ 568 (644)
..++|.+++++...+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777666554
No 321
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.89 E-value=2.7e+02 Score=22.76 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=20.8
Q ss_pred HHHHHHHhHHcCCCCCC-hhhHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Q 006457 273 ALDVFDQMVKSTDVKCN-AVTLSAVLLAIAHLGVLRLGKCIHDQVIKMDLEE 323 (644)
Q Consensus 273 A~~~~~~m~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 323 (644)
+.++|..|. ..|+--. +.-|......+...|++.+|..++..-++.+-.|
T Consensus 84 p~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLY-NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHH-TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555554 3333322 2223333333344444444444444444443333
No 322
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.85 E-value=2.6e+02 Score=24.97 Aligned_cols=96 Identities=7% Similarity=0.008 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCC-------CcccHHHHHHHHh--ccCCcHHHHHHHHHHHHhC----
Q 006457 37 NVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTP-------TRSTFPCAIKSCS--ALHDLHSGKQAHQQAFIFG---- 103 (644)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 103 (644)
|..-++.|..+ ++.|+.+....+++.....+... |..-.+.|..++. +.|+.+-++.+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 34445555544 45677777777777666555332 2333444444443 2466666666665533211
Q ss_pred -----CC-CChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 006457 104 -----FH-RDVFVSSALIDMYSKCGELSDARKLFDEI 134 (644)
Q Consensus 104 -----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 134 (644)
.. .|..-.+. +...+..|+.+-+..+++.-
T Consensus 89 ~i~~~~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTA-LHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHTCCCCSTTTTTCCH-HHHHHHTTCHHHHHHHHHTT
T ss_pred HhhcccccccCCCCCH-HHHHHHcCCHHHHHHHHHCC
Confidence 10 12222233 33345667877777777653
No 323
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.81 E-value=1.4e+02 Score=26.59 Aligned_cols=86 Identities=14% Similarity=-0.073 Sum_probs=42.0
Q ss_pred HHHcCCCchHHHHHHHHhhHCCCCCCc-------ccHHHHHHHHhcc---CCcHHHHHHHHHHHHhCCC----------C
Q 006457 47 DLARGGDSVEALRAFSSMRKLSLTPTR-------STFPCAIKSCSAL---HDLHSGKQAHQQAFIFGFH----------R 106 (644)
Q Consensus 47 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~----------~ 106 (644)
..++.|+.+....+++.+...|..++. .-.+.|..+ +.. |+.+-++.+++.-...+.. .
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 86 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDE 86 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCST
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhcccccccc
Confidence 334566666666666666665654443 223333333 333 5665555555443332211 0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhhC
Q 006457 107 DVFVSSALIDMYSKCGELSDARKLFDEI 134 (644)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 134 (644)
|..-.+ .+...+..|+.+-+..+++.-
T Consensus 87 d~~g~t-~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 87 FYQGHS-ALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp TTTTCC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred cccCCC-HHHHHHHcCCHHHHHHHHHcC
Confidence 111222 333445667777777776653
No 324
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=25.05 E-value=1.2e+02 Score=21.55 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhH
Q 006457 128 RKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFL 168 (644)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 168 (644)
..++++++..+|++.||+-+...+-+.--..+++.+.+++-
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35788888888899999988876666655667777776653
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.04 E-value=3.3e+02 Score=23.36 Aligned_cols=19 Identities=5% Similarity=0.083 Sum_probs=10.2
Q ss_pred HHHHHhcCCHHHHHHHHhc
Q 006457 230 IDAYARGGHVDVSRKVFDG 248 (644)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~ 248 (644)
+...++.|+.+-+.-+++.
T Consensus 176 L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 176 LHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHC
Confidence 3344555666655555554
No 326
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.73 E-value=4.7e+02 Score=25.03 Aligned_cols=78 Identities=6% Similarity=0.021 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 006457 359 WTAMIAGYGMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL--VQEGWHWLNTMGHEFNIEPGVEHYGCMVDL 436 (644)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 436 (644)
.+.++.=|...|+.++|...++++..-.+. ..+....+..+.-+.++ .+....++..+... |+-+.......+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 456666677777777777777766421111 12334444445554332 34456666666443 554444444444444
Q ss_pred Hh
Q 006457 437 LG 438 (644)
Q Consensus 437 ~~ 438 (644)
+.
T Consensus 298 l~ 299 (358)
T 3eiq_C 298 YN 299 (358)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.86 E-value=1.5e+02 Score=24.02 Aligned_cols=60 Identities=5% Similarity=-0.063 Sum_probs=28.7
Q ss_pred hhHCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 006457 64 MRKLSLTPTRSTFPCAIKSCSALHDLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGEL 124 (644)
Q Consensus 64 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 124 (644)
|.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 444555543322 223333333444455666666665555444444444445555555543
No 328
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=23.49 E-value=21 Score=24.48 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.5
Q ss_pred eeEEEecCCcccccccccccCCC
Q 006457 620 REIVVRDSKRFHYFKDGLCSCGD 642 (644)
Q Consensus 620 ~~~~~~~~~~~h~~~~g~~~~~~ 642 (644)
..|=+.|.+..|+|+||+-+-.|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 46678999999999999866443
No 329
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.37 E-value=21 Score=21.62 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=10.1
Q ss_pred hccccCCcchhh
Q 006457 600 NLRVCGDCHTVI 611 (644)
Q Consensus 600 ~l~~~~~~~~~~ 611 (644)
+.|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998654
No 330
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=23.29 E-value=1.3e+02 Score=21.26 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHHhhcCCC-CCcchHHHHHHHHHcCCCchHHHHHHHHh
Q 006457 26 TTLFNKYVDK-NNVFSWNSVIADLARGGDSVEALRAFSSM 64 (644)
Q Consensus 26 ~~~f~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m 64 (644)
..+++++|.- |++.||+-+...+-+..-..++..+..++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567777753 47888887776655544455555555443
No 331
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.21 E-value=4.7e+02 Score=24.54 Aligned_cols=49 Identities=6% Similarity=-0.087 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHhHHcCCCCCChhhHHHHHHHHHccccHHHHHHHHHHHHHh
Q 006457 255 VTWNSIIAIYAQNGLAAEALDVFDQMVKSTDVKCNAVTLSAVLLAIAHLGVLRLGKCIHDQVIKM 319 (644)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 319 (644)
-+...-|....+.+++..|-.+-+++. +.+ |+ ....++|++++....+.
T Consensus 208 LaLr~AM~~a~K~KNy~tAa~fArrLL-el~--p~-------------~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 208 NALQVAMSQHFKHKNFLQASYFAGEFL-KII--SS-------------GPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC--CS-------------SHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH-hcC--CC-------------HHHHHHHHHHHHHHhcC
Confidence 356666777888899999988888887 333 22 12345566776666554
No 332
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.73 E-value=3.3e+02 Score=22.60 Aligned_cols=47 Identities=4% Similarity=-0.022 Sum_probs=37.6
Q ss_pred HHHHHHHhhc--cCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCC
Q 006457 478 GEIAAKKLFE--LEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRL 524 (644)
Q Consensus 478 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 524 (644)
...+|+.|.. +.-.-+..|...+..+...|++.+|.++++.-.+++-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6667777765 4466678899999999999999999999988777653
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.54 E-value=5e+02 Score=28.87 Aligned_cols=126 Identities=10% Similarity=-0.025 Sum_probs=73.5
Q ss_pred HHHHHHhCCChHHHHHHHhhCCCCCCCeecHHHHHHHHHhCCChhHHHHHHHHhHhhhhccCCCCCCCCCccCCHhhHHH
Q 006457 114 LIDMYSKCGELSDARKLFDEIPQRIRNIVSWTSMLTGYVQNDNAREALLLFKEFLLEESECGGASENSDNVFVDSVAIAS 193 (644)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~p~~~t~~~ 193 (644)
++..+...|..+-|.++....+. +...--.+..+|...|++++|..+|++. ..|+.++......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kA-------------A~gl~~~~~~~~~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTT-------------SLVLYSHTSQFAV 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTC-------------CCTTCSSCCSCGG
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHH-------------hhhcccCcccccc
Confidence 66667778888888887777665 4333345668899999999999999986 4454332211100
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCC-CCCccHHHHHHHHHHhcCCHHHHHHHHhc----CCCCCH----hHHHHHHHHH
Q 006457 194 VLSACSRVTVNGVTEGAHGFVIKRGF-DSEVGVGNTLIDAYARGGHVDVSRKVFDG----MIEKDA----VTWNSIIAIY 264 (644)
Q Consensus 194 ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~ 264 (644)
. .....++. .... .....-|..++..+-+.+.++.+.++-+. +...|. ..|+.+.++.
T Consensus 880 ~----------~~~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a 946 (950)
T 4gq2_M 880 L----------REFQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTA 946 (950)
T ss_dssp G----------HHHHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHH
T ss_pred h----------hhhhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 0 00000000 0000 01123577888888888888776655443 333333 3577777776
Q ss_pred HHCC
Q 006457 265 AQNG 268 (644)
Q Consensus 265 ~~~g 268 (644)
+..|
T Consensus 947 ~a~g 950 (950)
T 4gq2_M 947 CAAG 950 (950)
T ss_dssp HHHC
T ss_pred hhCC
Confidence 6544
No 334
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.21 E-value=2.7e+02 Score=24.33 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCh------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 006457 407 VQEGWHWLNTMGHEFNIEPGV------EHYGCMVDLLGRAGKLKEAYDLIEGM-KVKADFVVWGSLLGACRIHKNV 475 (644)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~ 475 (644)
++.|+.+|+.+.++..+.... -.-...+-.|.+.|.+++|.+++++. +..|+..-...-+....+.+|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.63 E-value=3e+02 Score=21.70 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCchHHHHHHhhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhhHCCCCCCcc---cHHHHHHHHh
Q 006457 11 SVVSNVDKHSTNTNLTTLFNKYVDK---NNVFSWNSVIADLARGGDSVEALRAFSSMRKLSLTPTRS---TFPCAIKSCS 84 (644)
Q Consensus 11 ~l~~~~~~~~~~~~A~~~f~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~ 84 (644)
..+...++.|+.+.+..+++..+.. .|..-++.+.. +..|+.+ +++.+.+.|..++.. -.+.+ ...+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 76 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTA----IALELLKQGASPNVQDTSGTSPV-HDAA 76 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCCHH----HHHHHHHCCCCCCCcCCCCCCHH-HHHH
Confidence 3455667889999999999873211 13334444443 6677755 344444556555432 23333 3344
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHhhCCCC-CCCeecHHHHHHHHHhCCChhHHH
Q 006457 85 ALHDLHSGKQAHQQAFIFGFHRDVF--VSSALIDMYSKCGELSDARKLFDEIPQR-IRNIVSWTSMLTGYVQNDNAREAL 161 (644)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 161 (644)
..|+.+ +.+.+++.|..++.. .....+...+..|+.+-+.-+++. ... ..|..-.+. +...++.|+.+-+.
T Consensus 77 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~-l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 77 RTGFLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP-LELALQRGAQDLVD 150 (156)
T ss_dssp HTTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH-HHHHHHSCCHHHHH
T ss_pred HcCcHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH-HHHHHHcCcHHHHH
Confidence 456654 455566677655432 122234444567888888877776 331 222222333 33444566655444
Q ss_pred HHH
Q 006457 162 LLF 164 (644)
Q Consensus 162 ~~~ 164 (644)
-++
T Consensus 151 ~Ll 153 (156)
T 1bd8_A 151 ILQ 153 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 336
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.31 E-value=1.2e+02 Score=24.34 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=4.1
Q ss_pred cCCHHHHHHHH
Q 006457 236 GGHVDVSRKVF 246 (644)
Q Consensus 236 ~g~~~~A~~~~ 246 (644)
.|+.+-+.-++
T Consensus 111 ~~~~~~v~~Ll 121 (156)
T 1bd8_A 111 EGHTAVVSFLA 121 (156)
T ss_dssp HTCHHHHHHHH
T ss_pred hChHHHHHHHH
Confidence 33333333333
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.26 E-value=2e+02 Score=20.18 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=33.4
Q ss_pred HhhHCCCCCCcccHHHHHHHHhccC-CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 006457 63 SMRKLSLTPTRSTFPCAIKSCSALH-DLHSGKQAHQQAFIFGFHRDVFVSSALIDMYSKCGE 123 (644)
Q Consensus 63 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 123 (644)
.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3555666654433 34455555443 445567777777666555555555555666655554
No 338
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.14 E-value=4.2e+02 Score=25.00 Aligned_cols=55 Identities=5% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHHCCC-hhHHHHHHHHhH
Q 006457 227 NTLIDAYARGGHVDVSRKVFDGMIEKD---AVTWNSIIAIYAQNGL-AAEALDVFDQMV 281 (644)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 281 (644)
..++.=|...|+.++|.+.++++..|. ......+..++-+... -+.+..++..+.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~ 73 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLL 73 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 567788888899999999999987663 2223333333322221 233445666665
No 339
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.97 E-value=2.5e+02 Score=20.47 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 006457 338 CGQVDLARKAFNQMKEKNVRSWTAMIAGYGMHCRAREA 375 (644)
Q Consensus 338 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (644)
....++|.++++.++.++...|..++.++...|...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 56678888888888888888888888888877764433
No 340
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.90 E-value=3.5e+02 Score=25.48 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006457 333 DMYCKCGQVDLARKAFNQMKEKNV-RSWTAMIAGYGMHCRAREALDLFYKMIKAGVRPN 390 (644)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 390 (644)
...+..|+.+-+..+++.-...+. .-++. +...+..|+.+-+..+++.....|..|+
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 334455666555555554433222 12222 2233345666555555555444444443
No 341
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.59 E-value=1e+02 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=15.5
Q ss_pred CchHHHHHHhhcCCCCCcchHHHHHHHHHcCC
Q 006457 21 TNTNLTTLFNKYVDKNNVFSWNSVIADLARGG 52 (644)
Q Consensus 21 ~~~~A~~~f~~~~~~p~~~~~~~li~~~~~~g 52 (644)
+.+.|+++++.++.+ ...+|..++.++.+.+
T Consensus 51 ~~~kar~Lld~l~~k-G~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 51 QQQRAAMLIKMILKK-DNDSYVSFYNALLHEG 81 (94)
T ss_dssp HHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHc-CHHHHHHHHHHHHHcC
Confidence 334455555555555 4444555555554444
No 342
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.47 E-value=4.1e+02 Score=22.87 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=33.5
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006457 361 AMIAGY---GMHCRAREALDLFYKMIKAGVRPNYITFVSVLSACSHAGL 406 (644)
Q Consensus 361 ~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 406 (644)
-+|+++ .+..+.+.|+-++-+|++.| .|..+.-..++.|...-|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 345554 34578999999999999999 7777766667777666654
No 343
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.28 E-value=71 Score=21.29 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=18.5
Q ss_pred CCChhHHHHHHHHhHHcCCCCCChh
Q 006457 267 NGLAAEALDVFDQMVKSTDVKCNAV 291 (644)
Q Consensus 267 ~g~~~~A~~~~~~m~~~~~~~p~~~ 291 (644)
.-+++.|+..|.++.....++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578999999999874556777654
No 344
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.10 E-value=1.2e+02 Score=20.22 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHhhcCCchHHHHHHHHHhhCCCcCC
Q 006457 479 EIAAKKLFELEPNNCGYHVLLSNIYANAGRWEDVERTRSLMKNRRLAKT 527 (644)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 527 (644)
++..+.+.++.|+- .....-.-.-...|+.+.|...+-.|...+..+.
T Consensus 10 ee~l~~L~emFP~l-d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 34444555556652 2222222223566778888888777766554443
Done!