BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006458
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKS 457
P + +L YGPPGTGKT+ A+ +A ++ + + G + V + + + +F AK+
Sbjct: 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKE- 108
Query: 458 KRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALATNRPGD 513
K ++FIDE DA +R E QR+ + L G D D+ + ATNRP
Sbjct: 109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
LD A+ R D ++E P P ++ R ++LK++
Sbjct: 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 200
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKKS 457
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A+++
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569
Query: 458 KRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPGD 513
+LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 570 A-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKKS 457
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A+++
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569
Query: 458 KRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPGD 513
+LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 570 A-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKS 457
P + +L YGPPGTGKT+ AR +A ++ + + G + V + + +LF+ A ++
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA-RT 300
Query: 458 KRGLLLFIDEADAFLCERNKTYM---SEAQRSALNALLFRTG-DQSKDIVLALATNRPGD 513
K+ ++F DE DA R +E QR+ L + G D +I + ATNRP
Sbjct: 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSR 554
LD A+ RID +EF LP E R + +++ + G R
Sbjct: 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR 403
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALM-TGGDVAPLGPQAVTKIHQLFDWAKKS 457
P + +L YGPPGTGKT+ A+ +A G ++ G V ++ I ++F +AK+
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEH 273
Query: 458 KRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALATNRPGD 513
+ ++F+DE DA R S E QR+ + L G D + +ATNRP
Sbjct: 274 E-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
LD A+ R+D +E PLP + R ++ K++ K
Sbjct: 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 37/255 (14%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K + P +L YGPPGTGK+ A+ +A ++ + ++ D V+ ++ + QLF
Sbjct: 78 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 137
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATN 509
A+++K ++FID+ DA R + SEA R LL + G+ S+ +++ ATN
Sbjct: 138 MARENKPS-IIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATN 195
Query: 510 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQK 569
P LDSA+ R + + PLP R + ++ + P +
Sbjct: 196 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV--------GDTPSV----------- 236
Query: 570 IEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629
LT + A TEG+SG +IA + V+ A+ + + F++V E
Sbjct: 237 -----LTKEDYRTLGAMTEGYSGSDIAVV---VKDALMQPIRKIQSATHFKDV----STE 284
Query: 630 HQQRRKLAAAGGGSN 644
+ RKL + G +
Sbjct: 285 DDETRKLTPSSPGDD 299
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 37/255 (14%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K + P +L YGPPGTGK+ A+ +A ++ + ++ D V+ ++ + QLF
Sbjct: 54 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 113
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATN 509
A+++K ++FIDE DA R + SEA R LL + G+ S+ +++ ATN
Sbjct: 114 MARENKPS-IIFIDEVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATN 171
Query: 510 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQK 569
P LDSA+ R + + PLP R + ++ + P +
Sbjct: 172 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV--------GDTPCV----------- 212
Query: 570 IEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629
LT + A TEG+SG +IA + V+ A+ + + F++V E
Sbjct: 213 -----LTKEDYRTLGAMTEGYSGSDIAVV---VKDALMQPIRKIQSATHFKDV----STE 260
Query: 630 HQQRRKLAAAGGGSN 644
+ RKL G +
Sbjct: 261 DDETRKLTPCSPGDD 275
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAPLGPQAVTKIHQLFDWAKK 456
P+R +L +GPPGTGK+ A+ +A ++ +++ + V+ ++ + LF A++
Sbjct: 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 225
Query: 457 SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATNRPGD 513
+K ++FIDE D+ LC SEA R L + G + I++ ATN P
Sbjct: 226 NKPS-IIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283
Query: 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573
LDSA+ R ++ + PLP R + +L+L GS +
Sbjct: 284 LDSAIRRRFEKRIYIPLPEAHARAAMFRLHL-------GSTQ-----------------N 319
Query: 574 GLTDDILMEAAAKTEGFSGREIAKLM 599
LT+ E KT+G+SG +I+ ++
Sbjct: 320 SLTEADFQELGRKTDGYSGADISIIV 345
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 16/180 (8%)
Query: 379 LQKRIRQLSGATANTKAHNAPFRNM--------LFYGPPGTGKTMAARELARKSGLDYAL 430
L K+I +L A F++M L YGPPGTGKT+ AR A ++ +
Sbjct: 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245
Query: 431 MTGGDVAPLGP-QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS---EAQRS 486
+ + + + + F AK+ K ++FIDE DA +R + S E QR+
Sbjct: 246 LAAPQLVQMYIGEGAKLVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKSGDREVQRT 304
Query: 487 ALNALLFRTGDQSKDIVLAL-ATNRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
L L G S D V L ATNR LD A+ + R+D +EFPLP ++ R ++L+++
Sbjct: 305 MLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIH 364
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 37/255 (14%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K + P +L YGPPGTGK+ A+ +A ++ + ++ D V+ ++ + QLF
Sbjct: 63 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 122
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATN 509
A+++K ++FID+ DA R + SEA R LL + G+ S+ +++ ATN
Sbjct: 123 MARENKPS-IIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATN 180
Query: 510 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQK 569
P LDSA+ R + + PLP R + ++ + P +
Sbjct: 181 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV--------GDTPCV----------- 221
Query: 570 IEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629
LT + A TEG+SG +IA + V+ A+ + + F++V E
Sbjct: 222 -----LTKEDYRTLGAMTEGYSGSDIAVV---VKDALMQPIRKIQSATHFKDV----STE 269
Query: 630 HQQRRKLAAAGGGSN 644
+ RKL G +
Sbjct: 270 DDETRKLTPCSPGDD 284
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 37/255 (14%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K + P +L YGPPGTGK+ A+ +A ++ + ++ D V+ ++ + QLF
Sbjct: 45 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 104
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATN 509
A+++K ++FID+ DA R + SEA R LL + G+ S+ +++ ATN
Sbjct: 105 MARENKPS-IIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162
Query: 510 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQK 569
P LDSA+ R + + PLP R + ++ G L +++
Sbjct: 163 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEI-------NVGDTPCVLTKEDYRT---- 211
Query: 570 IEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629
A TEG+SG +IA + V+ A+ + + F++V E
Sbjct: 212 -------------LGAMTEGYSGSDIAVV---VKDALMQPIRKIQSATHFKDV----STE 251
Query: 630 HQQRRKLAAAGGGSN 644
+ RKL G +
Sbjct: 252 DDETRKLTPCSPGDD 266
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKKS 457
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A+++
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 107
Query: 458 KRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPGD 513
+LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 108 A-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKKSK 458
+ ++ YGPPGTGKT+ AR +A + + ++G ++ +G + + +LF A++
Sbjct: 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG-EGSRMVRELFVMAREHA 241
Query: 459 RGLLLFIDEADAFLCERNKTYM---SEAQRSALNALLFRTG-DQSKDIVLALATNRPGDL 514
++F+DE D+ R + SE QR+ L L G + SK+I + +ATNR L
Sbjct: 242 PS-IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300
Query: 515 DSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
D A+ RID +EFP P R ++L+++
Sbjct: 301 DPALLRPGRIDRKIEFPPPSVAARAEILRIH 331
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 31/207 (14%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAPLGPQAVTKIHQLFDWAK 455
P+R +L +GPPGTGK+ A+ +A ++ +++ + V+ ++ + LF A+
Sbjct: 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR 102
Query: 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATNRPG 512
++K ++FIDE D+ LC SEA R L + G + I++ ATN P
Sbjct: 103 ENKPS-IIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160
Query: 513 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
LDSA+ R ++ + PLP R + KL+L G+ + L F+
Sbjct: 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL-------GTTQNSLTEADFR-------- 205
Query: 573 KGLTDDILMEAAAKTEGFSGREIAKLM 599
E KT+G+SG +I+ ++
Sbjct: 206 ---------ELGRKTDGYSGADISIIV 223
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 26/183 (14%)
Query: 393 TKAHNAPFRN--------------MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438
T A AP RN +L GPPG GKT+ A+ +A +SGL++ + G ++
Sbjct: 23 TMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82
Query: 439 LGP-QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG- 496
+ ++ + Q+F AK S ++F DE DA LC R + A +N LL
Sbjct: 83 MYVGESERAVRQVFQRAKNSA-PCVIFFDEVDA-LCPRRSDRETGASVRVVNQLLTEMDG 140
Query: 497 -DQSKDIVLALATNRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGS 553
+ + + + ATNRP +D A+ R+D+ L LP +R +L K I + G+
Sbjct: 141 LEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAIL-----KTITKNGT 195
Query: 554 RKP 556
+ P
Sbjct: 196 KPP 198
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 35/208 (16%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK----IHQLFDW 453
AP R +L +GPPG GKTM A+ +A +S + ++ A L + V + + LF
Sbjct: 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA---ASLTSKYVGEGEKLVRALFAV 202
Query: 454 AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS--KDIVLAL-ATNR 510
A++ + ++ FID+ D+ LCER + ++R L+ G QS D VL + ATNR
Sbjct: 203 ARELQPSII-FIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261
Query: 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 570
P +LD AV R + + LP +E R L L + + GS
Sbjct: 262 PQELDEAVLRRFIKRVYVSLPNEETR----LLLLKNLLCKQGS----------------- 300
Query: 571 EIKGLTDDILMEAAAKTEGFSGREIAKL 598
LT L + A T+G+SG ++ L
Sbjct: 301 ---PLTQKELAQLARMTDGYSGSDLTAL 325
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL----GPQAVTKIHQLFDWA 454
P R +L YGPPGTGKTM + +A + + + G + GP+ V +F A
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMV---RDVFRLA 261
Query: 455 KKSKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALATNR 510
+++ ++FIDE D+ +R E QR + L G DQS ++ + +ATNR
Sbjct: 262 RENAPS-IIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320
Query: 511 PGDLDSAV--ADRIDEVLEFP 529
LD A+ R+D +EFP
Sbjct: 321 ADTLDPALLRPGRLDRKIEFP 341
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 41/239 (17%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL--GPQAVTKIHQLFDWAKKSK 458
+ +L GPPGTGKT+ AR +A ++ + + ++G D L G A ++ LF A K+
Sbjct: 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA-ARVRDLFAQA-KAH 107
Query: 459 RGLLLFIDEADAFLCERNKTYMS--EAQRSALNALLFRTG--DQSKDIVLALATNRPGDL 514
++FIDE DA R + + LN LL D + I++ ATNRP L
Sbjct: 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167
Query: 515 DSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
D A+ R D+ + P R K+L+++ KP
Sbjct: 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHT--------RNKP---------------- 203
Query: 573 KGLTDDILMEAAAK-TEGFSGREIAKLM--ASVQAAVYGSENCVLDPSLFREVVDYKVA 628
L +D+ +E AK T GF G ++ L+ A++ AA G + + F E +D +A
Sbjct: 204 --LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD--FEEAIDRVIA 258
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPGTGKT+ A+ +A ++ + + ++G D V +++ +F+ AKK+
Sbjct: 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP 105
Query: 460 GLLLFIDEADAFLCERNKTYMS--EAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R + + LN +L + ++ I++ ATNRP LD
Sbjct: 106 -CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYL 544
A+ R D + LP R ++LK+++
Sbjct: 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHM 195
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 31/207 (14%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAK 455
P + +L +GPPGTGKT+ + +A +SG + ++ + +G + + LF A
Sbjct: 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVG-EGEKMVRALFAVA- 172
Query: 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLAL-ATNRPG 512
+ ++ ++FIDE D+ L +R ++R L+ G S+D +L + ATNRP
Sbjct: 173 RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232
Query: 513 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
++D A R+ + L PLP +A +RK +V L EQ
Sbjct: 233 EIDEAARRRLVKRLYIPLP------------------EASARK-QIVINLMSKEQ----- 268
Query: 573 KGLTDDILMEAAAKTEGFSGREIAKLM 599
L+++ + + +++ FSG ++ +L
Sbjct: 269 CCLSEEEIEQIVQQSDAFSGADMTQLC 295
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPG GKT AR +A ++ + + +G D V ++ LF+ AK+
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA- 123
Query: 460 GLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGDQSKD--IVLALATNRPGDLD 515
++FIDE DA +R ++ + LN LL KD IV+ ATNRP LD
Sbjct: 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 183
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYL-------DKYIAQAGSRKPGLV 559
A+ R D + P + R ++L+++ D +A R PG V
Sbjct: 184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 236
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPG GKT AR +A ++ + + +G D V ++ LF+ AK+
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA- 132
Query: 460 GLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGDQSKD--IVLALATNRPGDLD 515
++FIDE DA +R ++ + LN LL KD IV+ ATNRP LD
Sbjct: 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYL-------DKYIAQAGSRKPGLV 559
A+ R D + P + R ++L+++ D +A R PG V
Sbjct: 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 37/209 (17%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPGTGKT+ A+ +A ++ + + M G + +++ LF+ AKK
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAP 104
Query: 460 GLLLFIDEADAFLCER---NKTYMSEAQRSALNALLFRT---GDQSKDIVLALATNRPGD 513
++FIDE DA R ++ + LN LL G ++ +++ ATNRP
Sbjct: 105 S-IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163
Query: 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573
LD A+ PG+ +R L+ KP R+ E K+ IK
Sbjct: 164 LDPALMR----------PGRFDRQVLVD-------------KPDFNGRV---EILKVHIK 197
Query: 574 G--LTDDI-LMEAAAKTEGFSGREIAKLM 599
G L +D+ L E A T G +G ++A ++
Sbjct: 198 GVKLANDVNLQEVAKLTAGLAGADLANII 226
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 41/239 (17%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL--GPQAVTKIHQLFDWAKKSK 458
+ +L GPPGTG T+ AR +A ++ + + ++G D L G A ++ LF A K+
Sbjct: 50 KGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGA-ARVRDLFAQA-KAH 107
Query: 459 RGLLLFIDEADAFLCERNKTYMS--EAQRSALNALLFRTG--DQSKDIVLALATNRPGDL 514
++FIDE DA R + + LN LL D + I++ ATNRP L
Sbjct: 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167
Query: 515 DSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
D A+ R D+ + P R K+L+++ +R
Sbjct: 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIH---------TRN----------------- 201
Query: 573 KGLTDDILMEAAAK-TEGFSGREIAKLM--ASVQAAVYGSENCVLDPSLFREVVDYKVA 628
K L +D+ +E AK T GF G ++ L+ A++ AA G + + F E +D +A
Sbjct: 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD--FEEAIDRVIA 258
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPG GKT AR +A ++ + + +G D V ++ LF+ AK+
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 460 GLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGDQSKD--IVLALATNRPGDLD 515
++FIDE DA +R ++ + LN LL KD IV+ ATNRP LD
Sbjct: 134 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYL-------DKYIAQAGSRKPGLV 559
A+ R D + P + R ++L+++ D +A R PG V
Sbjct: 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPG GKT AR +A ++ + + +G D V ++ LF+ AK+
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109
Query: 460 GLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGDQSKD--IVLALATNRPGDLD 515
++FIDE DA +R ++ + LN LL KD IV+ ATNRP LD
Sbjct: 110 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYL-------DKYIAQAGSRKPGLV 559
A+ R D + P + R ++L+++ D +A R PG V
Sbjct: 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ L GPPG GKT+ A+ +A ++ + + M G + V +G ++ LF A +++
Sbjct: 40 KGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA-RARA 98
Query: 460 GLLLFIDEADAFLCERNKT---YMSEAQRSALNALLFRT-GDQSKDIVLALA-TNRPGDL 514
+++IDE DA +R+ T + + + LN LL G + D V+ LA TNR L
Sbjct: 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADIL 158
Query: 515 DSAVA--DRIDEVLEFPLPGQEERFKLLKLYL 544
D A+ R+D + LP +ER ++ + +L
Sbjct: 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 14/158 (8%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL----GPQAVTKIHQLFDWA 454
P + ++ YG PGTGKT+ A+ +A ++ + + G ++ GP+ Q+F A
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC---RQIFKVA 271
Query: 455 KKSKRGLLLFIDEADAFLCER---NKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNR 510
++ ++FIDE DA +R N E QR+ L L G D D+ + +ATN+
Sbjct: 272 GENAPS-IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330
Query: 511 PGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
LD A+ RID + F P + K+L ++ K
Sbjct: 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 14/158 (8%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK----IHQLFDW 453
AP + +L +GPPG GKT+ AR +A + + ++ A L + V + LF
Sbjct: 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISA---ASLTSKYVGDGEKLVRALFAV 108
Query: 454 AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----DQSKDIVLALAT 508
A+ + ++FIDE D+ L ER+ + ++R L+ G D + +VLA AT
Sbjct: 109 ARHMQPS-IIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA-AT 166
Query: 509 NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 546
NRP +LD A R + + LP ++ R LL L K
Sbjct: 167 NRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK 204
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 380 QKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438
Q+R++Q L KA P ++L +GPPG GKT A +A + G++ + +G +
Sbjct: 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76
Query: 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 498
G A A + G +LFIDE L + + ++ A + ++ G
Sbjct: 77 PGDLAAI-------LANSLEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPA 128
Query: 499 SKDIVLAL-------ATNRPGDLDSAVADR--IDEVLEFPLP 531
++ I L L AT RPG + + + R I E LE+ P
Sbjct: 129 ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 170
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 380 QKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438
Q+R++Q L KA P ++L +GPPG GKT A +A + G++ + +G +
Sbjct: 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76
Query: 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 498
G A A + G +LFIDE L + + ++ A + ++ G
Sbjct: 77 PGDLAAI-------LANSLEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPA 128
Query: 499 SKDIVLAL-------ATNRPGDLDSAVADR--IDEVLEFPLP 531
++ I L L AT RPG + + + R I E LE+ P
Sbjct: 129 ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 170
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 380 QKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438
Q+R++Q L KA P ++L +GPPG GKT A +A + G++ + +G +
Sbjct: 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76
Query: 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 498
G A A + G +LFIDE L + + ++ A + ++ G
Sbjct: 77 PGDLAAI-------LANSLEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPA 128
Query: 499 SKDIVLAL-------ATNRPGDLDSAVADR--IDEVLEFPLP 531
++ I L L AT RPG + + + R I E LE+ P
Sbjct: 129 ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 170
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 24/114 (21%)
Query: 402 NMLFYGPPGTGKTMAARELARK-SGLDYALMT---------GGDVAPLGPQAVTKIHQLF 451
++LFYGPPGTGKT LAR+ G +Y+ M G DV + Q+F
Sbjct: 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIF 107
Query: 452 DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLA 505
SK L+ +DEADA M+ A ++AL ++ R ++ VLA
Sbjct: 108 -----SKGFKLIILDEADA---------MTNAAQNALRRVIERYTKNTRFCVLA 147
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 402 NMLFYGPPGTGKTMAARELARKSGLDYA------LMTGGDVAPLGPQAVTKIHQLFDW-A 454
N+L GP G+GKT+ A+ LA+ + A L G V +T++ Q DW
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 455 KKSKRGLLLFIDEAD 469
+K+++G ++FIDE D
Sbjct: 134 QKAQKG-IVFIDEID 147
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 400 FRNMLFYGPPGTGKTMAARELARKSGLDY---ALMTGGDVAPLGPQAVTKIHQLFDWAKK 456
+M+ +GPPGTGKT A +AR + D + +T G V +I + + A++
Sbjct: 50 LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---------VKEIREAIERARQ 100
Query: 457 SK---RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 513
++ R +LF+DE F +S +A L D + + A N +
Sbjct: 101 NRNAGRRTILFVDEVHRF------------NKSQQDAFLPHIEDGTITFIGATTENPSFE 148
Query: 514 LDSAVADR 521
L+SA+ R
Sbjct: 149 LNSALLSR 156
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436
FR + YGPPG GKT AA +A++ G D DV
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437
N+L G PG GKT +ELA KSGL Y + GD+A
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 46
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437
N+L G PG GKT +ELA KSGL Y + GD+A
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 39
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG---GDVAPLGPQAVTKIHQLFD 452
H +N+L GP G GKT AR LA+ + + + +V +G + + I L D
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 453 WAKKSKRGL----LLFIDEADAFLCERNKTYMSEAQRSAL 488
A + + ++FIDE D +C++ + ++ R +
Sbjct: 106 SAGGAIDAVEQNGIVFIDEIDK-ICKKGEYSGADVSREGV 144
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 395 AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDW- 453
AH P +M F G PGTGKT A ++A GL + L G V +VT+ + +
Sbjct: 55 AHETPTLHMSFTGNPGTGKTTVALKMA---GLLHRL---GYVRKGHLVSVTRDDLVGQYI 108
Query: 454 ---AKKSKR------GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 504
A K+K G +LFIDEA N+ + + A+ LL + D+V+
Sbjct: 109 GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENNRDDLVV 165
Query: 505 ALA--TNRPGDL---DSAVADRIDEVLEFPLPGQEERFKLLKLYLD 545
LA +R + + RI +EFP EE F++ LD
Sbjct: 166 ILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 211
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARK 423
K+ N P +MLFYGPPGTGKT L ++
Sbjct: 54 KSANLP--HMLFYGPPGTGKTSTILALTKE 81
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 395 AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDW- 453
AH P +M F G PGTGKT A ++A GL + L G V +VT+ + +
Sbjct: 62 AHETPTLHMSFTGNPGTGKTTVALKMA---GLLHRL---GYVRKGHLVSVTRDDLVGQYI 115
Query: 454 ---AKKSKR------GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 504
A K+K G +LFIDEA N+ + + A+ LL + D+V+
Sbjct: 116 GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENNRDDLVV 172
Query: 505 ALA--TNRPGDL---DSAVADRIDEVLEFPLPGQEERFKLLKLYLD 545
LA +R + + RI +EFP EE F++ LD
Sbjct: 173 ILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 402 NMLFYGPPGTGKTMAARELARKSGLDY------ALMTGGDVAPLGPQAVTKIHQLFDW-A 454
N+L GP G+GKT+ A LAR + + L G V + K+ Q D+
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 112
Query: 455 KKSKRGLLLFIDEAD 469
+K++RG +++ID+ D
Sbjct: 113 QKAQRG-IVYIDQID 126
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 402 NMLFYGPPGTGKTMAARELARKSGLDY------ALMTGGDVAPLGPQAVTKIHQLFDW-A 454
N+L GP G+GKT+ A LAR + + L G V + K+ Q D+
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 112
Query: 455 KKSKRGLLLFIDEAD 469
+K++RG +++ID+ D
Sbjct: 113 QKAQRG-IVYIDQID 126
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 397 NAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAPLGPQAVTKIHQLF 451
N P ++LF GPPGTGKT A LAR ++ M D G V H++
Sbjct: 37 NIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGIDVVR--HKIK 90
Query: 452 DWAKKSKRG----LLLFIDEADAF 471
++A+ + G ++F+DEADA
Sbjct: 91 EFARTAPIGGAPFKIIFLDEADAL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 24/169 (14%)
Query: 384 RQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443
++LS A K ++L GPPG GKT A +A + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALN----ALLFRTGDQS 499
+RG +LFIDE R + E SA+ ++ G +
Sbjct: 95 A--------ILTSLERGDVLFIDE-----IHRLNKAVEELLYSAIEDFQIDIMIGKGPSA 141
Query: 500 KDI-------VLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLK 541
K I L AT R G L S + R +LE +E +++K
Sbjct: 142 KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIK 190
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 24/156 (15%)
Query: 384 RQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443
++LS A K ++L GPPG GKT A +A + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALN----ALLFRTGDQS 499
+RG +LFIDE R + E SA+ ++ G +
Sbjct: 95 A--------ILTSLERGDVLFIDE-----IHRLNKAVEELLYSAIEDFQIDIMIGKGPSA 141
Query: 500 KDI-------VLALATNRPGDLDSAVADRIDEVLEF 528
K I L AT R G L S + R +LE
Sbjct: 142 KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILEL 177
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 402 NMLFYGPPGTGKTMAARELARK 423
++LF GPPG GKT AA LAR+
Sbjct: 48 HLLFAGPPGVGKTTAALALARE 69
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 397 NAPFRNMLFYGPPGTGKTMAARELARKSGL-----DYALMTGGDVAPLGPQAVTKIHQLF 451
N P ++LF GPPGTGKT A LAR ++ M D G V H++
Sbjct: 37 NIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGIDVVR--HKIK 90
Query: 452 DWAKKSKRG----LLLFIDEADAF 471
++A+ + G ++F+DEADA
Sbjct: 91 EFARTAPIGGAPFKIIFLDEADAL 114
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 380 QKRIRQLSGATAN-TKAHNAPFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDV 436
Q+ R+ G K+ R +L GPPGTGKT A +A++ G + + M G +V
Sbjct: 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 389 ATANTKAHNAPFRNMLFYGPPGTGKTMAARELA 421
A A K N P + LF GP G GKT A+ LA
Sbjct: 577 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 24/156 (15%)
Query: 384 RQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443
++LS A K ++L GPPG GKT A +A + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALN----ALLFRTGDQS 499
+RG +LFIDE R + E SA+ ++ G +
Sbjct: 95 A--------ILTSLERGDVLFIDE-----IHRLNKAVEELLYSAIEDFQIDIMIGKGPSA 141
Query: 500 KDI-------VLALATNRPGDLDSAVADRIDEVLEF 528
K I L AT R G L S + R +LE
Sbjct: 142 KSIRIDIQPFTLVGATVRSGLLSSPLRSRFGIILEL 177
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG---GDVAPLGPQAVTKIHQLFD 452
H +N+L GP G GKT AR LA+ + + + +V +G + + I L D
Sbjct: 45 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 104
Query: 453 WAKKSKR 459
A K R
Sbjct: 105 AAVKMVR 111
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG---GDVAPLGPQAVTKIHQLFD 452
H +N+L GP G GKT AR LA+ + + + +V +G + + I L D
Sbjct: 52 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 111
Query: 453 WAKKSKR 459
A K R
Sbjct: 112 AAVKMVR 118
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 24/156 (15%)
Query: 384 RQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443
++LS A K ++L GPPG GKT A +A + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALN----ALLFRTGDQS 499
+RG +LFIDE R + E SA+ ++ G +
Sbjct: 95 A--------ILTSLERGDVLFIDE-----IHRLNKAVEELLYSAIEDFQIDIMIGKGPSA 141
Query: 500 KDI-------VLALATNRPGDLDSAVADRIDEVLEF 528
K I L +T R G L S + R +LE
Sbjct: 142 KSIRIDIQPFTLVGSTTRSGLLSSPLRSRFGIILEL 177
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG---GDVAPLGPQAVTKIHQLFD 452
H +N+L GP G GKT AR LA+ + + + +V +G + + I L D
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 453 WAKKSKR 459
A K R
Sbjct: 106 AAVKMVR 112
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 24/156 (15%)
Query: 384 RQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443
++LS A K ++L GPPG G+T A +A + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALN----ALLFRTGDQS 499
+RG +LFIDE R + E SA+ ++ G +
Sbjct: 95 A--------ILTSLERGDVLFIDE-----IHRLNKAVEELLYSAIEDFQIDIMIGKGPSA 141
Query: 500 KDI-------VLALATNRPGDLDSAVADRIDEVLEF 528
K I L AT R G L S + R +LE
Sbjct: 142 KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILEL 177
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG---GDVAPLGPQAVTKIHQLFD 452
H +N+L GP G GKT AR LA+ + + + +V +G + + I L D
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 453 WAKKSKR 459
A K R
Sbjct: 106 SAMKLVR 112
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 28/168 (16%)
Query: 395 AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDW- 453
AH P + F G PGTGKT A + +GL + L G V +VT+ + +
Sbjct: 62 AHETPTLHXSFTGNPGTGKTTVA---LKXAGLLHRL---GYVRKGHLVSVTRDDLVGQYI 115
Query: 454 ---AKKSKR------GLLLFIDEADAFLCERN-KTYMSEAQRSALNALLFRTGDQSKD-- 501
A K+K G +LFIDEA N + Y EA +L + + ++D
Sbjct: 116 GHTAPKTKEVLKRAXGGVLFIDEAYYLYRPDNERDYGQEAIE-----ILLQVXENNRDDL 170
Query: 502 -IVLALATNRPGDL---DSAVADRIDEVLEFPLPGQEERFKLLKLYLD 545
++LA +R + + RI +EFP EE F++ LD
Sbjct: 171 VVILAGYADRXENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHXLD 218
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 389 ATANTKAHNAPFRNMLFYGPPGTGKTMAARELA 421
A A K N P + LF GP G GKT A+ LA
Sbjct: 33 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 65
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 389 ATANTKAHNAPFRNMLFYGPPGTGKTMAARELA 421
A A K N P + LF GP G GKT A+ LA
Sbjct: 36 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 68
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG---GDVAPLGPQAVTKIHQLFD 452
H +N+L GP G GKT AR LA+ + + + +V +G + + I L D
Sbjct: 46 HEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Query: 453 WAKKSKR 459
A K R
Sbjct: 106 SAXKLVR 112
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 403 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDV--------APLGPQA 443
++F GPPG GK A+ LA++ G + ++ GD+ PLG +A
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKA 49
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 379 LQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436
+++RI + TK+ P + GPPG GKT A+ +A+ G + ++ G V
Sbjct: 89 VKERILEYLAVQKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 24/156 (15%)
Query: 384 RQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443
++LS A K ++L GPPG GKT A +A + + + +G + G A
Sbjct: 35 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94
Query: 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALN----ALLFRTGDQS 499
+RG +LFIDE R + E SA+ ++ G +
Sbjct: 95 A--------ILTSLERGDVLFIDE-----IHRLNKAVEELLYSAIEDFQIDIMIGKGPSA 141
Query: 500 KDI-------VLALATNRPGDLDSAVADRIDEVLEF 528
K I L AT R G L S + +LE
Sbjct: 142 KSIRIDIQPFTLVGATTRSGLLSSPLRSAFGIILEL 177
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 407 GPPGTGKTMAARELARKSGLDYALMTG 433
GP GTGK+ A+ELAR+ G Y L TG
Sbjct: 11 GPSGTGKSSVAKELARQLGASY-LDTG 36
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 380 QKRIRQLSGATAN-TKAHNAPFRNMLFYGPPGTGKTMAARELARKSG 425
Q+ R+ G K+ R +L GPPGTGKT A +A++ G
Sbjct: 56 QENAREACGVIVELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELG 102
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 399 PFRNMLFYGPPGTGKTMAARELA 421
P + +F GP G GKT AR LA
Sbjct: 520 PIGSFIFLGPTGVGKTELARALA 542
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSK-- 458
R ++ GPPG+GKTM R S L + ++ +H+ ++ SK
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL 1327
Query: 459 --------RGLLLFIDE 467
+ L+LF DE
Sbjct: 1328 TLLPKSDIKNLVLFCDE 1344
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSK-- 458
R ++ GPPG+GKTM R S L + ++ +H+ ++ SK
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL 1108
Query: 459 --------RGLLLFIDE 467
+ L+LF DE
Sbjct: 1109 TLLPKSDIKNLVLFCDE 1125
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK---IHQLFDWA 454
P ++L GPP +GKT A ++A +S + + D +G K + ++FD A
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 119
Query: 455 KKSKRGLLLFID 466
KS+ ++ D
Sbjct: 120 YKSQLSCVVVDD 131
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK---IHQLFDWA 454
P ++L GPP +GKT A ++A +S + + D +G K + ++FD A
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 120
Query: 455 KKSKRGLLLFIDEADAFL 472
KS+ ++ +D+ + L
Sbjct: 121 YKSQLSCVV-VDDIERLL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,071,738
Number of Sequences: 62578
Number of extensions: 553029
Number of successful extensions: 1838
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 151
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)