BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006458
(644 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/574 (40%), Positives = 334/574 (58%), Gaps = 43/574 (7%)
Query: 79 DQPRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQ 138
++P+ + FDP LER AK RE+ S +AK+A K QEET Q E +K EY+A
Sbjct: 37 NKPKDKWSNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQLEQQSKIKEYEAAV 96
Query: 139 AQAENERQRVIYDEQRKLAQHNAQTKSQMAR--YEDELARKRMQAENEYHRARNQELVKM 196
Q +NE+ RV +E+RK N +TK AR Y+D+LAR+R + + + +N+E ++
Sbjct: 97 EQLKNEQIRVQAEERRKTL--NEETKQHQARAQYQDKLARQRYEDQLRQQQLQNEENLRR 154
Query: 197 QEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEDVN 256
QEES + E R+AT E + E+ + +R AEA RA + D+
Sbjct: 155 QEESVQKQEAMRKATVEH-----------EMELRHKNEMLRIEAEARARAKVERENADII 203
Query: 257 RRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREG 316
R + +A R+ + +I T G G RA ++D +K+ V G + LA GIYT +
Sbjct: 204 RENIRLKAAEHRQTVLESIKTAGTVFGEGFRAFISDWDKVTATVAGLSLLAVGIYTAKNA 263
Query: 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILH 376
V Y++ LG+PSL+R++SR + +K K L SK + VIL
Sbjct: 264 TGVAGRYIEARLGKPSLVRDTSRFT------VAEAVKHPVKISKRLLSKIQDALEGVILS 317
Query: 377 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436
P L++R+R ++ AT NTKA+ +RN+L YGPPGTGKT+ A++LA SG+DYA+MTGGDV
Sbjct: 318 PKLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV 377
Query: 437 APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496
AP+G + VT +H++FDWA SKRGLLLF+DEADAFL +R+ +SE R+ LNA L+RTG
Sbjct: 378 APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG 437
Query: 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKP 556
+QS +L LA+N+P D A+ DRIDE++ F LPG EER +L++LY DKY+ Q S
Sbjct: 438 EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLYFDKYVLQPASEG- 496
Query: 557 GLVHRLFKSEQQKIEI------KGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSE 610
+Q++++ K +D A TEG SGREI+KL + QAA Y SE
Sbjct: 497 ----------KQRLKVAQFDYGKKCSD-----LAQLTEGMSGREISKLGVAWQAAAYASE 541
Query: 611 NCVLDPSLFREVVDYKVAEHQQRRKLAAAGGGSN 644
+ +L+ ++ V + +HQQ+ + A G N
Sbjct: 542 DGILNEAMIDARVADAIRQHQQKMEWLKAEGKEN 575
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 227/566 (40%), Positives = 328/566 (57%), Gaps = 33/566 (5%)
Query: 79 DQPRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQ 138
++P+ + FDP LER AK RE+ S +AK+A K QEET Q E AK EY+A
Sbjct: 37 NRPKDKWSNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQMEQQAKIKEYEAAV 96
Query: 139 AQAENERQRVIYDEQRKLAQHNAQTKSQMAR--YEDELARKRMQAENEYHRARNQELVKM 196
Q +NE+ RV +E+RK N +TK AR Y+D+LAR+R + + + +N+E ++
Sbjct: 97 EQIKNEQIRVQSEEKRKTL--NEETKQHQARAQYQDKLARQRYEDQLRQQQLQNEENLRR 154
Query: 197 QEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEDVN 256
QEES + E R+AT E + E+ + +R AEA RA + D+
Sbjct: 155 QEESVQKQEAMRKATVEH-----------EMELRHKNDMLRIEAEAHARAKVERENADII 203
Query: 257 RRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREG 316
R + +A R+ + +I T G G R ++D +K+ V G T LA G+YT + G
Sbjct: 204 REQIRLKAAEHRQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVYTAKNG 263
Query: 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILH 376
V Y++ LG+PSL+R++SR +K K + SK + VIL
Sbjct: 264 TGVAGRYIEARLGKPSLVRDTSRIT------VVEAIKHPIKISKRIFSKIQDALEGVILS 317
Query: 377 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436
P L++R+R ++ AT NTKA+ +RN+L YGPPGTGKT+ A++LA S +DYA+MTGGDV
Sbjct: 318 PRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSSMDYAIMTGGDV 377
Query: 437 APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496
AP+G + VT +H++FDWA SKRGLLLF+DEADAFL +R+ +SE R+ LNA L+RTG
Sbjct: 378 APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG 437
Query: 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKP 556
+QS +L LA+N+P D A+ DRIDE++ F LPG EER +L++LY DKY+ Q S
Sbjct: 438 EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLYFDKYVLQPASEG- 496
Query: 557 GLVHRLFKSEQQKIEIKGLT-DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLD 615
+Q++++ E A TEG SGREI+KL + QAA Y SE+ +L
Sbjct: 497 ----------KQRLKVAQFDYGKKCSELATLTEGMSGREISKLGVAWQAAAYASEDGILT 546
Query: 616 PSLFREVVDYKVAEHQQRRKLAAAGG 641
++ V + +HQQ+ + A G
Sbjct: 547 EAMIDARVADAIRQHQQKMEWLKAEG 572
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/566 (40%), Positives = 328/566 (57%), Gaps = 33/566 (5%)
Query: 79 DQPRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQ 138
++P+ + FDP LER AK RE+ S +AK+A K QEET Q E AK EY+A
Sbjct: 37 NKPKDKWSNFDPTGLERAAKAARELDQSRHAKEAINLAKVQEETLQMEQQAKIKEYEAAV 96
Query: 139 AQAENERQRVIYDEQRKLAQHNAQTKSQMAR--YEDELARKRMQAENEYHRARNQELVKM 196
Q +NE+ RV +E+RK N +TK AR Y+D+LAR+R + + + +N+E ++
Sbjct: 97 EQLKNEQIRVQAEERRKTL--NEETKQHQARAQYQDKLARQRYEDQLRQQQLQNEENLRR 154
Query: 197 QEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEDVN 256
QE+S + E RRAT E + E+ + +R AEA +A + D+
Sbjct: 155 QEDSVQKQEAMRRATVEH-----------EMELRHKNEMLRIEAEARAQAKVERENADII 203
Query: 257 RRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREG 316
R + +A R+ + +I T G G R ++D +K+ V G T LA G+YT +
Sbjct: 204 REQIRLKAAEHRQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVYTAKNA 263
Query: 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILH 376
V Y++ LG+PSL+R++SR + +K K L SK + VIL
Sbjct: 264 TGVAGRYIEARLGKPSLVRDTSRIT------VAEAVKHPIKITKRLYSKIQDALEGVILS 317
Query: 377 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436
P L++R+R ++ AT NTKA+ +RN+L YGPPGTGKT+ A++LA SG+DYA+MTGGDV
Sbjct: 318 PRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV 377
Query: 437 APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496
AP+G + VT +H++FDWA SKRGLLLF+DEADAFL +R+ +SE R+ LNA L+RTG
Sbjct: 378 APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG 437
Query: 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSR-K 555
+QS +L LA+N+P D A+ DRIDE++ F LPG EER +L++LY DKY+ Q S K
Sbjct: 438 EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLYFDKYVLQPASEGK 497
Query: 556 PGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLD 615
L F ++ E+ L TEG SGREI+KL + QAA Y SE+ +L
Sbjct: 498 QRLKVAQFDYGKKCSELSKL-----------TEGMSGREISKLGVAWQAAAYASEDGILT 546
Query: 616 PSLFREVVDYKVAEHQQRRKLAAAGG 641
++ V + +HQQ+ A G
Sbjct: 547 EAMIDARVADAIRQHQQKMAWLKAEG 572
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/554 (39%), Positives = 327/554 (59%), Gaps = 41/554 (7%)
Query: 88 FDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQAENERQR 147
FD LER AK R++ PNAK+A E + QE T+Q E+ + + +A A ++E R
Sbjct: 47 FDSTALERAAKAARDLEKFPNAKEALELSRMQEVTRQKEVENETKKIEAQLANMKSEHIR 106
Query: 148 VIYDEQRKLAQHNAQTKSQMARYEDELARKRMQAENEYHRARNQELVKMQEESSIRLEQA 207
V +E+RK + A Y+D+LARKR + E +E ++ QEES + EQ
Sbjct: 107 VAEEERRKTLGEETKHAHSRAEYQDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQL 166
Query: 208 RRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGR---AHEAKLAEDVNRRMLVDRA 264
R+ T E A K + E EK + E R RA A + R + KL E+ NR+ ++++
Sbjct: 167 RKQTIEHELALKHKYELEKIDAE---TRARAKAARDNRDVNLEQMKLHEEENRKTVIEK- 222
Query: 265 NAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYV 324
I T+ + IG GL L D+ K+ AVGG TALA G YT + G V Y+
Sbjct: 223 ----------IKTSGELIGSGLNQFLNDKTKIAAAVGGLTALAVGWYTAKRGTGVTARYI 272
Query: 325 DRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIR 384
+ LG+PSL+RE+SR P + +KS++ + + + V+L P+L++R+R
Sbjct: 273 ESRLGKPSLVRETSR-ITPLE-VLKHPIKSVQM----MTRQKKDPLNGVVLPPALERRLR 326
Query: 385 QLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 444
++ T+NTK +N FRN++FYGPPGTGKT+ A+ LA+ SGLDYA++TGGD+APLG V
Sbjct: 327 DIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHSGLDYAVLTGGDIAPLGRDGV 386
Query: 445 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 504
+ IH++FDWA KS++GL++FIDEADAFL +R+K MSE R+ALNA LFRTG+QS+ +L
Sbjct: 387 SAIHKVFDWASKSRKGLIVFIDEADAFLQKRSKNGMSEDTRAALNAFLFRTGEQSRKFML 446
Query: 505 ALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI---AQAGSRKPGLVHR 561
+A+N+P D AV DR D+++EF LPG EER ++L Y +++I A +GSR
Sbjct: 447 VVASNQPEQFDWAVNDRFDQLVEFTLPGMEERERILLQYFNEHIVTPATSGSR------- 499
Query: 562 LFKSEQQKIEIKGLTDDI--LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLF 619
Q++++ D + E A KT G SGRE++KL+ QA+ Y SE VL ++
Sbjct: 500 -----SQRLKLDNF-DWVAKCNEVAKKTSGMSGRELSKLVIGWQASAYASETGVLTEAIV 553
Query: 620 REVVDYKVAEHQQR 633
+ +H+ +
Sbjct: 554 DRNTADAMVQHEHK 567
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 351 bits (901), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 222/567 (39%), Positives = 322/567 (56%), Gaps = 39/567 (6%)
Query: 81 PRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQ 140
P+ + FDP LER AK RE+ S +AK+A + QE+T Q E AK EY+A Q
Sbjct: 42 PKDKWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEHQAKLKEYEAAVEQ 101
Query: 141 AENERQRVIYDEQRKLAQHNAQTKSQMARYEDELARKRMQAENEYHRARNQELVKMQEES 200
+ ++ RV +E+RK + A+Y+D+LAR+R + + + + N+E ++ QEES
Sbjct: 102 LKGDQIRVQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEES 161
Query: 201 SIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEDVNRRML 260
+ E RRAT ERE E+ + +R AEA RA + D+ R +
Sbjct: 162 VQKQEALRRAT----------VERE-MELRHKNEMLRVEAEARARAKAERENADIIREQI 210
Query: 261 VDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVI 320
+A R+ + +I T G G RA +TD +K+ V G T LA GIY+ + V
Sbjct: 211 RLKAAEHRQTILESIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGIYSAKNATSVA 270
Query: 321 WGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGG---DKELASKNGNGFGDVILHP 377
Y++ LG+PSL+RE+SR L++LR + L SK + V+L P
Sbjct: 271 GRYIEARLGKPSLVRETSR---------ITVLEALRHPIQVSRRLLSKPQDALEGVVLSP 321
Query: 378 SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437
SL+ R+R ++ AT NTK + + +RN+L YGPPGTGKT+ A++LA SG+DYA+MTGGDVA
Sbjct: 322 SLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 381
Query: 438 PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 497
P+G VT +H++FDWA S+RGLLLF+DEADAFL +R +SE R+ LNA L RTG
Sbjct: 382 PMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQ 441
Query: 498 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI---AQAGSR 554
S +L LA+N+P D A+ DRIDE++ F LP +EER +L+++Y DKY+ A G +
Sbjct: 442 HSSKFMLVLASNQPEQFDWAINDRIDEMVSFELPQREERERLVRMYFDKYVLKPATEGKQ 501
Query: 555 KPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 614
+ L F ++ EI L TEG SGREI++L + QA Y SE+ VL
Sbjct: 502 RLKLAQ--FDYGKKCSEIAQL-----------TEGMSGREISQLAVAWQAMAYASEDGVL 548
Query: 615 DPSLFREVVDYKVAEHQQRRKLAAAGG 641
++ V + +H+Q+ + A G
Sbjct: 549 TEAMMDARVQDAIQQHRQKMQWLKAEG 575
>sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 218/557 (39%), Positives = 321/557 (57%), Gaps = 35/557 (6%)
Query: 81 PRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQ 140
P+ + FDP LER AK RE+ S +AK+A + QE+T Q E +K EY+A Q
Sbjct: 42 PKDKWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEQQSKLKEYEAAVEQ 101
Query: 141 AENERQRVIYDEQRKLAQHNAQTKSQMARYEDELARKRMQAENEYHRARNQELVKMQEES 200
++E+ RV +E+RK + A+Y+D+LAR+R + + + + N+E ++ QEES
Sbjct: 102 LKSEQIRVQAEERRKTLTEETRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEES 161
Query: 201 SIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEDVNRRML 260
+ E RRAT ERE E+ + +R AEA RA + D+ R +
Sbjct: 162 VQKQEAIRRAT----------VERE-MELRHKNEMLRVEAEARARAKADRENADIIREQI 210
Query: 261 VDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVI 320
+A R+ + +I T +G G RA +TD +K+ V G T LA G+Y+ + V
Sbjct: 211 RLKAAEHRQTILESIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVA 270
Query: 321 WGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGG---DKELASKNGNGFGDVILHP 377
Y++ LG+PSL+RE+SR L++LR + L S+ + VIL P
Sbjct: 271 GRYIEARLGKPSLVRETSRIS---------VLEALRHPIQVSRRLVSRPQDALEGVILSP 321
Query: 378 SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437
SL+ R+R ++ AT NTK + + +RN+L YGPPGTGKT+ A++LA SG+DYA+MTGGDVA
Sbjct: 322 SLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 381
Query: 438 PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 497
P+G + VT +H++FDWA S+RGLLLF+DEADAFL +R +SE R+ LNA L RTG
Sbjct: 382 PMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQ 441
Query: 498 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPG 557
S +L LA+N+P D A+ DRIDE++ F LP +EER +L+++Y DKY+ + +
Sbjct: 442 HSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDKYVLKPATEG-- 499
Query: 558 LVHRLFKSEQQKIEIKGLT-DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDP 616
+Q++++ E A TEG SGREIA+L + QA Y SE+ VL
Sbjct: 500 ---------KQRLKVAQFDYGKKCSEVAQLTEGMSGREIAQLAVAWQAMAYSSEDGVLTE 550
Query: 617 SLFREVVDYKVAEHQQR 633
++ V V +HQQ+
Sbjct: 551 AMMDARVQDAVQQHQQK 567
>sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 224/581 (38%), Positives = 329/581 (56%), Gaps = 42/581 (7%)
Query: 57 QPPAAAAGDKSASAPAPARVRNDQPRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFM 116
QP A + GD+ A P+ P+ + FDP LER AK RE+ S +AK+A
Sbjct: 25 QPGAESGGDRGA-GDRPS------PKDKWSNFDPTGLERAAKAARELEHSRHAKEALNLA 77
Query: 117 KKQEETKQTELAAKAAEYKAMQAQAENERQRVIYDEQRKLAQHNAQTKSQMARYEDELAR 176
+ QE+T Q E +K EY+A Q ++E+ RV +E+RK + A+Y+D+LAR
Sbjct: 78 QMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRVQAEERRKTLNEETRQHQARAQYQDKLAR 137
Query: 177 KRMQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRV 236
+R + + + + N+E ++ QEES + E RRAT ERE E+ + +
Sbjct: 138 QRYEDQLKQQQLLNEENLRKQEESVQKQEAIRRAT----------VERE-MELRHKNEML 186
Query: 237 RAMAEAEGRAHEAKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKL 296
R AEA RA + D+ R + +A R+ + +I T G G RA +TD +K+
Sbjct: 187 RVEAEARARAKADRENADIIREQIRLKAAEHRQTILESIRTAGTLFGEGFRAFVTDWDKV 246
Query: 297 VVAVGGATALAAGIYTTREGAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLR 356
V G T LA G+Y+ + V Y++ LG+PSL+RE+SR L++LR
Sbjct: 247 TATVAGLTLLAVGVYSAKNATSVAGRYIEARLGKPSLVRETSR---------ISVLEALR 297
Query: 357 GG---DKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGK 413
+ L S+ + VIL PSL+ R+R ++ AT NTK + + +RN+L YGPPGTGK
Sbjct: 298 HPIQVSRRLVSRPQDALEGVILSPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGK 357
Query: 414 TMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC 473
T+ A++LA SG+DYA+MTGGDVAP+G + VT +H++FDWA S+RGLLLF+DEADAFL
Sbjct: 358 TLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLR 417
Query: 474 ERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQ 533
+R +SE R+ LNA L RTG S +L LA+N+P D A+ DRIDE++ F LP +
Sbjct: 418 KRATEKISEDLRATLNAFLHRTGQHSNKFMLVLASNQPEQFDWAINDRIDEMVCFALPQR 477
Query: 534 EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT-DDILMEAAAKTEGFSG 592
EER +L+++Y DKY+ + + +Q++++ E A T G SG
Sbjct: 478 EERERLVRMYFDKYVLKPATEG-----------KQRLKVAQFDYGKKCSEVAQLTAGMSG 526
Query: 593 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQR 633
REIA+L + QA Y SE+ VL ++ V V +HQQ+
Sbjct: 527 REIAQLAVAWQAMAYSSEDGVLTEAMMDARVQDAVQQHQQK 567
>sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens
GN=ATAD3B PE=1 SV=1
Length = 648
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 216/569 (37%), Positives = 319/569 (56%), Gaps = 40/569 (7%)
Query: 81 PRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQ 140
P+ + FDP LER AK RE+ S AK+A + QE+T Q E +K EY+A Q
Sbjct: 43 PKDKWSNFDPTGLERAAKAARELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQ 102
Query: 141 AENERQRVIYDEQRKLAQHNAQTKSQMARYEDELARKRMQAENEYHRARNQELVKMQEES 200
++E+ R +E+RK + A+Y+D+LAR+R + + + + N+E ++ QEES
Sbjct: 103 LKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLNEENLRKQEES 162
Query: 201 SIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEDVNRRML 260
+ E RRAT E+ + + E + E E R RA AE E D+ R +
Sbjct: 163 VQKQEAMRRATVEREMELRHKNEMLRVETE---ARARAKAEREN--------ADIIREQI 211
Query: 261 VDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVI 320
+A+ R+ + +I T G G RA +TD++K+ V G T LA G+Y+ + V
Sbjct: 212 RLKASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVT 271
Query: 321 WGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGG---DKELASKNGNGFGDVILHP 377
+++ LG+PSL+RE+SR L++LR + L S+ + V+L P
Sbjct: 272 GRFIEARLGKPSLVRETSR---------ITVLEALRHPIQVSRRLLSRPQDVLEGVVLSP 322
Query: 378 SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437
SL+ R+R ++ AT NTK + +R++L YGPPGTGKT+ A++LA SG+DYA+MTGGDVA
Sbjct: 323 SLEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 382
Query: 438 PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 497
P+G + VT +H+LFDWA S+RGLLLF+DEADAFL +R +S+ R+ LNA L+ G
Sbjct: 383 PMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMGQ 442
Query: 498 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI---AQAGSR 554
S +L LA+N P D A+ RID ++ F LP QEER +L++L+ D + A G R
Sbjct: 443 HSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKPATEGKR 502
Query: 555 KPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 614
+ L F ++ E+ L TEG SGREIA+L S QA Y S++ VL
Sbjct: 503 RLKLAQ--FDYGRKCSEVARL-----------TEGMSGREIAQLAVSWQATAYASKDGVL 549
Query: 615 DPSLFREVVDYKVAEHQQR-RKLAAAGGG 642
++ V V +++Q+ R L A G G
Sbjct: 550 TEAMMDACVQDAVQQYRQKMRWLKAEGPG 578
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 323 bits (828), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 214/544 (39%), Positives = 310/544 (56%), Gaps = 52/544 (9%)
Query: 104 SASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQAENERQRVIYDEQRKLAQHNAQT 163
SASP A E QE E A + + + ++AQAE ER++ + +E R QH A+
Sbjct: 127 SASPEQVPAGECCALQE----YEAAVEQLKSEQIRAQAE-ERRKTLSEETR---QHQAR- 177
Query: 164 KSQMARYEDELARKRMQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTE 223
A+Y+D+LAR+R + + + + N+E ++ QEES + E RRAT E
Sbjct: 178 ----AQYQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRAT----------VE 223
Query: 224 REKAEIERETIRVRAMAEAEGRAHEAKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIG 283
RE E+ + +R AEA RA + D+ R + +A R+ + +I T G
Sbjct: 224 RE-MELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLESIRTAGTLFG 282
Query: 284 GGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQPSLIRESSRGKYP 343
G RA +TD +K+ V G T LA G+Y+ + V +++ LG+PSL+RE+SR
Sbjct: 283 EGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPSLVRETSR---- 338
Query: 344 WSGLFSRTLKSLRGG---DKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPF 400
L++LR + L S+ + V+L PSL+ R+R ++ AT NTK + + +
Sbjct: 339 -----ITVLEALRHPIQVSRRLLSRPQDALEGVVLSPSLEARVRDIAIATRNTKKNRSLY 393
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRG 460
RN+L YGPPGTGKT+ A++LA SG+DYA+MTGGDVAP+G + VT +H+LFDWA S+RG
Sbjct: 394 RNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKLFDWANTSRRG 453
Query: 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD 520
LLLF+DEADAFL +R +SE R+ LNA L+RTG S +L LA+N+P D A+ D
Sbjct: 454 LLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLVLASNQPEQFDWAIND 513
Query: 521 RIDEVLEFPLPGQEERFKLLKLYLDKYI---AQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577
RI+E++ F LPGQEER +L+++Y DKY+ A G ++ L F ++ E+ L
Sbjct: 514 RINEMVHFDLPGQEERERLVRMYFDKYVLKPATEGKQRLKLAQ--FDYGRKCSEVARL-- 569
Query: 578 DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKLA 637
TEG SGREIA+L S QA Y SE+ VL ++ V V +HQQ+
Sbjct: 570 ---------TEGMSGREIAQLAVSWQATAYASEDGVLTEAMMDTRVQDAVQQHQQKMCWL 620
Query: 638 AAGG 641
A G
Sbjct: 621 KAEG 624
>sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens
GN=ATAD3C PE=2 SV=2
Length = 411
Score = 270 bits (690), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 218/368 (59%), Gaps = 32/368 (8%)
Query: 272 IAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQP 331
I A T F G G RA +TD++K+ V G T LA G+Y+ + V Y++ LG+P
Sbjct: 50 IRAAGTLF---GEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGRYIEARLGKP 106
Query: 332 SLIRESSRGKYPWSGLFSRTLKSLRGG----DKELASKNGNGFGDVILHPSLQKRIRQLS 387
SL+RE+SR L++LR + L S+ + V+L PSL+ R+R ++
Sbjct: 107 SLVRETSR---------ITVLEALRHPIQQVSRRLLSRPQDVLEGVVLSPSLEARVRDIA 157
Query: 388 GATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKI 447
T N K + +R++L YGPPGTGKT+ A++LA SG+DYA+MTGGDVAP+G + VT +
Sbjct: 158 IMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAM 217
Query: 448 HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALA 507
H+LFDWA S+RGLLLF+DEADAFL +R +SE R+ LNA L+RTG S +L LA
Sbjct: 218 HKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLILA 277
Query: 508 TNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI---AQAGSRKPGLVHRLFK 564
+ P D A+ ID ++ F LPGQEER +L+++YL++Y+ A G R+ L F
Sbjct: 278 SCHPEQFDWAINACIDVMVHFDLPGQEERARLVRMYLNEYVLKPATEGKRRLKLAQ--FD 335
Query: 565 SEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624
++ +EI L TEG S R+IA+L S QA Y S++ VL ++ V
Sbjct: 336 YGRKCLEIARL-----------TEGMSCRKIAQLAVSWQATAYASKDGVLTEAMMDACVQ 384
Query: 625 YKVAEHQQ 632
V +HQQ
Sbjct: 385 DFVQQHQQ 392
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 39/264 (14%)
Query: 342 YPWSG--LFSRTLKSLRGGDKELASKNGNG-FGDVILHPSLQKRIRQLSGATANTKAHN- 397
YP G + S T+ L+ K L ++ F ++I +K+ R + N K
Sbjct: 92 YPKEGGMITSETVFKLQTPKKVLRTQFKKAKFSEIIGQEEAKKKCRIIMKYLENPKLFGE 151
Query: 398 -APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQ---AVTKIHQLFDW 453
AP +N+LFYGPPGTGKT+ AR LA ++ + L+ ++ +G A I +L+
Sbjct: 152 WAP-KNVLFYGPPGTGKTLMARALATETNSSFILVKAPEL--IGEHVGDASKMIRELYQR 208
Query: 454 AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRP 511
A +S ++FIDE DA R + +NALL +++ +V ATN P
Sbjct: 209 ASESA-PCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNP 267
Query: 512 GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 571
LD A+ R +E +EF LP EER K+++LY K +
Sbjct: 268 AMLDPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKAN----------------- 310
Query: 572 IKGLTDDILMEAAAKTEGFSGREI 595
L E KT+GFSGR+I
Sbjct: 311 --------LKEFVEKTKGFSGRDI 326
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 113/216 (52%), Gaps = 39/216 (18%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL--GPQAVTKIHQLFDWAKKSK 458
+ ++ YGPPGTGKT+ A+ +A ++G+ + M+G D + G A ++I LF+ AKKS+
Sbjct: 180 KGVMLYGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQMYVGVGA-SRIRTLFNKAKKSE 238
Query: 459 RGLLLFIDEADAFLCERNK-TYMSEAQRS-ALNALLFRTG--DQSKDIVLALATNRPGDL 514
+ ++FIDE DA +R + T S +R LNALL ++K IV+ ATNR L
Sbjct: 239 KA-VIFIDEIDAIGKKRARSTSASNDERDQTLNALLTEMSGFHENKGIVVIGATNRLDTL 297
Query: 515 DSAVA--DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
D A+ R D +E LP R K+LKLY G +KP
Sbjct: 298 DEALLRPGRFDRQIEVGLPDILARKKILKLY--------GDKKP---------------- 333
Query: 573 KGLTDDILMEAAAK-TEGFSGREIAKLM--ASVQAA 605
L DD+ +E AK T FSG + L+ A++QAA
Sbjct: 334 --LGDDVDLEVLAKNTVSFSGAMLENLLNEAAIQAA 367
>sp|Q9P7J5|YJNA_SCHPO Uncharacterized AAA domain-containing protein C24B10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC24B10.10c PE=3 SV=1
Length = 355
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 6/164 (3%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK-IHQLFDWAKKSKR 459
+ +L YGPPG GKTM A+ LA++S + ++ G + K + LF A+K +
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEP 185
Query: 460 GLLLFIDEADAFLCERNKT---YMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDS 516
++ FIDE D FL +R +T M++ + ++ QS+ +VL ATNRP D+D
Sbjct: 186 TII-FIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLLSGQSRVLVLG-ATNRPADIDE 243
Query: 517 AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVH 560
A+ R+ +V PLP E+R K+L+LYL K +A G+V+
Sbjct: 244 AIRRRMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVN 287
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLF 451
K +P + +L YGPPGTGKT+ AR +A ++ + + G ++ +G + + +LF
Sbjct: 181 KVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIG-EGARLVRELF 239
Query: 452 DWAKKSKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALA 507
D AK+ ++FIDE DA RN + S E QR+ + L G D D+ + A
Sbjct: 240 DLAKQRAPS-IIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAA 298
Query: 508 TNRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
TNR LD A+ R D ++E PLP + R +LK++
Sbjct: 299 TNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIH 336
>sp|O27092|PRS2_METTH Putative 26S protease regulatory subunit homolog MTH_1011
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_1011 PE=3 SV=1
Length = 372
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA---VTKIHQLFDWAKKS 457
RN+LF+G PGTGKTM A+ LA + + L+ + +G +IH+L++ A K+
Sbjct: 158 RNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSL--IGEHVGDGARQIHELYELASKT 215
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++ FIDE DA +R + +NALL +Q+ +V ATN P LD
Sbjct: 216 APSVI-FIDEMDAIGLDRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLD 274
Query: 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFK 564
A+ R +E +EF LP EER KL L+KYI + V +L K
Sbjct: 275 KAIRSRFEEEIEFKLPDDEER----KLMLEKYIETMPLKVDFPVDKLVK 319
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 10/153 (6%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKK 456
P + +L YGPPGTGKT+ A+ +A ++ + + G ++ +G + + +LFD AKK
Sbjct: 211 PPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIG-EGARLVRELFDLAKK 269
Query: 457 SKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTGDQSK-DIVLALATNRPG 512
K ++FIDE DA R + S E QR+ + L G +++ D+ + ATNR
Sbjct: 270 -KAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRID 328
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
LD A+ R D ++E PLP +E R +LK++
Sbjct: 329 ILDKALLRPGRFDRIIEIPLPDEEGRLSILKVH 361
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 53/244 (21%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK--------IHQL 450
P + +L +GPPGTGKT+ A+ +A +SG ++ ++ GP+ +K I ++
Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANF-------ISVKGPEIFSKWVGESEKAIREI 537
Query: 451 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALAT 508
F A++S ++F DE DA +R + S +N LL ++ KD+V+ AT
Sbjct: 538 FRKARQSA-PCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAAT 596
Query: 509 NRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSE 566
NRP +D A+ R+D V+ P+P ++ R + K++
Sbjct: 597 NRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSM------------------- 637
Query: 567 QQKIEIKGLTDDI-LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDP----SLFRE 621
L +D+ L E A KTEG++G +I L +AA+ + P RE
Sbjct: 638 -------NLAEDVNLEELAKKTEGYTGADIEALCR--EAAMLAVRESIGKPWDIEVKLRE 688
Query: 622 VVDY 625
+++Y
Sbjct: 689 LINY 692
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKK 456
P + +L GPPGTGKT+ A+ +A ++G ++ ++ G ++ +G + + ++F+ A++
Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVG-ETEENLRKIFEEAEE 270
Query: 457 SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSK-DIVLALATNRPGDLD 515
+ ++FIDE DA +R++ +R L G + + +V+ ATNRP LD
Sbjct: 271 NAPS-IIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD 329
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D + +P +E R ++L+++
Sbjct: 330 PALRRPGRFDREIVIGVPDREGRKEILQIH 359
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 353 KSLRGGDKELASKNGNGFGDVILHPSLQKRIRQ--------LSGATANTKAHNAPFRNML 404
K R EL K FGD+ L +IR L K P + +L
Sbjct: 130 KDYRAMAMELEEKPDILFGDI---GGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVL 186
Query: 405 FYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKRGLLL 463
YGPPGTGKT+ A+ +AR++ + + G + V + + +F AK+ K ++
Sbjct: 187 LYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCII 245
Query: 464 FIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDSAV- 518
FIDE DA +R ++ E QR+ + L G D D+ + ATNRP LD A+
Sbjct: 246 FIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAIL 305
Query: 519 -ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
R D ++E P ++ R ++ K++ DK
Sbjct: 306 RPGRFDRIIEIAAPDEDGRLEIFKIHTDK 334
>sp|P42811|PRS2_METTM Putative 26S protease regulatory subunit homolog MTBMA_c13930
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=MTBMA_c13930
PE=3 SV=1
Length = 372
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA---VTKIHQLFDWAKKS 457
RN+LF+G PGTGKTM A+ LA + + L+ + +G +IH+L++ A K+
Sbjct: 158 RNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSL--IGEHVGDGARQIHELYELASKT 215
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++ FIDE DA +R + +NALL +Q+ +V ATN P LD
Sbjct: 216 APSVI-FIDEMDAIGLDRRFQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLD 274
Query: 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI 548
+A+ R +E +EF LPG +ER ++ L+KYI
Sbjct: 275 NAIRSRFEEEIEFKLPGDDER----RMMLEKYI 303
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 34/208 (16%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G +V + + ++ + + + F+ A+K+
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL-FRTGDQSK-DIVLALATNRPGDLD 515
++FIDE D+ +R+KT E +R ++ LL G +++ ++V+ ATNRP +D
Sbjct: 307 APA-IIFIDEIDSIAPKRDKTN-GEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSID 364
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573
A+ R D ++ +P R ++L+++ ++ K
Sbjct: 365 PALRRFGRFDREVDIGIPDATGRLEVLRIH---------------------TKNMK---- 399
Query: 574 GLTDDILMEA-AAKTEGFSGREIAKLMA 600
L DD+ +EA AA+T G+ G +IA L +
Sbjct: 400 -LADDVDLEALAAETHGYVGADIASLCS 426
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 37/229 (16%)
Query: 393 TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLF 451
TK +P + +LFYGPPGTGKT+ A+ +A + ++ + G ++ + ++ + I +F
Sbjct: 514 TKFGLSPSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIF 573
Query: 452 DWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALA 507
D A+ + ++F+DE D+ R + A +N LL + K++ + A
Sbjct: 574 DKARAAA-PTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGA 632
Query: 508 TNRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKS 565
TNRP +D A+ R+D+++ PLP + R +L L K +PGL
Sbjct: 633 TNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKT-----PLEPGLE------ 681
Query: 566 EQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQ-AAVYGSENCV 613
L A T+GFSG A L+ VQ AA Y ++ +
Sbjct: 682 --------------LTAIAKATQGFSG---ADLLYIVQRAAKYAIKDSI 713
>sp|Q6AZT2|SPAST_XENLA Spastin OS=Xenopus laevis GN=spast PE=2 SV=1
Length = 600
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAK 455
AP R +L +GPPG GKTM A+ +A +S + ++ + +G + + LF A+
Sbjct: 357 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVG-EGEKLVRALFSVAR 415
Query: 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS--KDIVLAL-ATNRPG 512
+ + ++FIDE D+ LCER + ++R L+ G QS D VL + ATNRP
Sbjct: 416 ELQPS-IIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQ 474
Query: 513 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
+LD AV R + + LP +E R LLK L K +
Sbjct: 475 ELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSK------------------------QG 510
Query: 573 KGLTDDILMEAAAKTEGFSGREIAKL 598
L++ L + + TEG+SG +I L
Sbjct: 511 NPLSEKELTQLSRLTEGYSGSDITAL 536
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K P + +L YGPPGTGKT+ A+ +A ++ + + G + V + + +F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALAT 508
AK+ K ++FIDE DA +R ++ E QR+ + L G D D+ + AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 509 NRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
NRP LD A+ R D ++E +P ++ R ++LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEK 334
>sp|P32795|YME1_YEAST Mitochondrial inner membrane i-AAA protease supercomplex subunit
YME1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YME1 PE=1 SV=1
Length = 747
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 36/216 (16%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGG--DVAPLGPQAVTKIHQLFDWAKKSK 458
+ +L GPPGTGKT+ AR A ++G+D+ M+G D +G A +I LF A +S+
Sbjct: 315 KGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGA-KRIRDLFAQA-RSR 372
Query: 459 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 516
++FIDE DA +RN + A+++ LN LL Q+ I++ ATN P LD
Sbjct: 373 APAIIFIDELDAIGGKRNPKDQAYAKQT-LNQLLVELDGFSQTSGIIIIGATNFPEALDK 431
Query: 517 AVA--DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574
A+ R D+V+ LP R +LK ++ K I A + P ++ R
Sbjct: 432 ALTRPGRFDKVVNVDLPDVRGRADILKHHMKK-ITLADNVDPTIIAR------------- 477
Query: 575 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSE 610
T G SG E+A L+ QAAVY +
Sbjct: 478 -----------GTPGLSGAELANLVN--QAAVYACQ 500
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 19/173 (10%)
Query: 376 HPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 435
HPSL K I G P R +L YGPPGTGKT+ AR +A ++G + L+ G +
Sbjct: 223 HPSLFKAI----GVK--------PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPE 270
Query: 436 V-APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL--L 492
+ + L ++ + + + F+ A+K+ ++FIDE DA +R+KT+ E +R ++ L L
Sbjct: 271 IMSKLAGESESNLRKAFEEAEKNSPA-IIFIDEIDAIAPKRDKTH-GEVERRIVSQLLTL 328
Query: 493 FRTGDQSKDIVLALATNRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
+S +++ ATNRP +D A+ R D ++ +P R ++L+++
Sbjct: 329 MDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIH 381
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKKS 457
P R +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + +FD A +S
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA-RS 565
Query: 458 KRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPGD 513
+LF DE D+ R N A +N +L K++ + ATNRP
Sbjct: 566 AAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 625
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP + R +LK L K
Sbjct: 626 IDPAILRPGRLDQLIYIPLPDDKSREAILKANLRK 660
>sp|Q8PY58|PAN_METMA Proteasome-activating nucleotidase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=pan PE=3 SV=1
Length = 420
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 10/156 (6%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKK 456
P + +L YG PGTGKT+ A+ +A ++ + + G ++ +G + ++F+ A+K
Sbjct: 192 PPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIG-DGSKLVREIFEMARK 250
Query: 457 SKRGLLLFIDEADAFLCER-NKTYMS--EAQRSALNALLFRTG-DQSKDIVLALATNRPG 512
K ++FIDE D+ R N+T + E QR+ + L G D+ K+I + ATNRP
Sbjct: 251 -KAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPD 309
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
LD A+ R D ++ P+PG E R K+LK++ +K
Sbjct: 310 VLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEK 345
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K P + +L YGPPGTGKT+ A+ +A ++ + + G + V + + +F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALAT 508
AK+ K ++FIDE DA +R ++ E QR+ + L G D D+ + AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 509 NRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
NRP LD A+ R D ++E +P ++ R ++LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEK 334
>sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1
Length = 613
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK----IHQLFDW 453
AP R +L +GPPG GKTM A+ +A +S + ++ A L + V + + LF
Sbjct: 370 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA---ASLTSKYVGEGEKLVRALFAV 426
Query: 454 AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS--KDIVLAL-ATNR 510
A++ + ++ FIDE D+ LCER + ++R L+ G QS +D +L + ATNR
Sbjct: 427 ARELQPSII-FIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSSGEDRILVMGATNR 485
Query: 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 570
P +LD AV R + + LP +E R LLK L K GS
Sbjct: 486 PQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQ----GS----------------- 524
Query: 571 EIKGLTDDILMEAAAKTEGFSGREIAKLM 599
LT L + A T+G+SG ++ L+
Sbjct: 525 ---PLTQKELAQLARMTDGYSGSDLTALV 550
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K P + +L YGPPGTGKT+ A+ +A ++ + + G + V + + +F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALAT 508
AK+ K ++FIDE DA +R ++ E QR+ + L G D D+ + AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 509 NRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
NRP LD A+ R D ++E +P ++ R +LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEK 334
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 37/251 (14%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKK 456
P + +L YGPPGTGKT+ A+ +A ++ + G ++ +G + + +LFD AK+
Sbjct: 186 PPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIG-EGARLVRELFDLAKE 244
Query: 457 SKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTGDQSK-DIVLALATNRPG 512
K ++FIDE DA R + S E QR+ + L G + + D+ + ATNR
Sbjct: 245 -KAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRID 303
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 570
LD+A+ R D ++E PLP E R+ +LK++
Sbjct: 304 ILDAALLRPGRFDRIIEIPLPDTEGRYSILKVH--------------------------T 337
Query: 571 EIKGLTDDI-LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629
L++D+ LME A TEG +G E+ + E+ +D F ++ +
Sbjct: 338 RCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFLTALNKFRCD 397
Query: 630 HQQRRKLAAAG 640
++ +L AG
Sbjct: 398 FERDHRLTTAG 408
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFD 452
K P + +L YGPPGTGKT+ A+ +A ++ + + G + V + + +F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 453 WAKKSKRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALAT 508
AK+ K ++FIDE DA +R ++ E QR+ + L G D D+ + AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 509 NRPGDLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
NRP LD A+ R D ++E +P ++ R +LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEK 334
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 110/208 (52%), Gaps = 34/208 (16%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + + ++ + + + F+ A+K+
Sbjct: 257 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL-FRTGDQSK-DIVLALATNRPGDLD 515
++FIDE D+ +R KT E +R ++ LL G +++ ++V+ ATNRP +D
Sbjct: 317 SPA-IIFIDEIDSIAPKREKTN-GEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID 374
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573
A+ R D ++ +P R ++L+++ ++ K
Sbjct: 375 PALRRFGRFDREVDVGIPDPTGRLEILRIH---------------------TKNMK---- 409
Query: 574 GLTDDILME-AAAKTEGFSGREIAKLMA 600
L DD+ +E AA+T G+ G ++A L +
Sbjct: 410 -LADDVDLEQIAAETHGYVGSDLASLCS 436
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 37/216 (17%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LF+GPPGTGKT+ A+ +A + ++ + G ++ + ++ + + +FD A+
Sbjct: 529 TPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARA 588
Query: 457 SKRGLLLFIDEADAFLCERNKTYMSEAQRS-ALNALLFRTG--DQSKDIVLALATNRPGD 513
+ ++F+DE D+ R + +N LL + K++ + ATNRP
Sbjct: 589 AA-PCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQ 647
Query: 514 LDSAVA--DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 571
+D A+ R+D+++ PLP +E RF +L Q ++
Sbjct: 648 IDPALMRPGRLDQLIYVPLPDEEARFSIL--------------------------QTQLR 681
Query: 572 IKGLTDDILMEAAAK-TEGFSGREIAKLMASVQAAV 606
+ +D+ + A AK T GFSG A L VQ AV
Sbjct: 682 HTPVAEDVDLRAVAKATHGFSG---ADLEFVVQRAV 714
>sp|Q8TI88|PAN_METAC Proteasome-activating nucleotidase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pan
PE=3 SV=2
Length = 421
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 10/156 (6%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKK 456
P + +L YG PGTGKT+ A+ +A ++ + + G ++ +G + ++F+ A+K
Sbjct: 192 PPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIG-DGSKLVREIFEMARK 250
Query: 457 SKRGLLLFIDEADAFLCER-NKTYMS--EAQRSALNALLFRTG-DQSKDIVLALATNRPG 512
K ++FIDE D+ R N+T + E QR+ + L G D+ K+I + ATNRP
Sbjct: 251 -KAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPD 309
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
LD A+ R D ++ P+PG E R K+LK++ K
Sbjct: 310 VLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGK 345
>sp|Q9SSB4|PRS7B_ARATH 26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana
GN=RPT1B PE=2 SV=2
Length = 464
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 10/153 (6%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKK 456
P + +L YGPPG+GKT+ AR +A ++G + + G ++ +G + + +LF A +
Sbjct: 238 PPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIG-EGARMVRELFQMA-R 295
Query: 457 SKRGLLLFIDEADAFLCERNKTYM---SEAQRSALNALLFRTG-DQSKDIVLALATNRPG 512
SK+ +LF DE DA R + +E QR+ L L G D +I + +ATNRP
Sbjct: 296 SKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPD 355
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
LD A+ R+D +EF LP E R ++ K++
Sbjct: 356 ILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIH 388
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate
3D7) GN=PF07_0047 PE=3 SV=2
Length = 1229
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 42/242 (17%)
Query: 372 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALM 431
+ IL+P K + + N + +L YGPPG GKT+ A+ +A + ++ +
Sbjct: 948 ETILYPLEYKHLYNKFNSNYN--------KGILLYGPPGCGKTLLAKAIANECKANFISV 999
Query: 432 TGGDVAPLG-PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNA 490
G ++ + ++ + LFD A ++ ++F DE D+ ERN ++A +N
Sbjct: 1000 KGPELLTMWFGESEANVRDLFDKA-RAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQ 1058
Query: 491 LLFRTG--DQSKDIVLALATNRPGDLDSAVA--DRIDEVLEFPLPGQEERFKLLKLYLDK 546
+L ++ K I + ATNRP LD A+ R+D+++ LP + R+ + K L
Sbjct: 1059 ILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAIL-- 1116
Query: 547 YIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI-LMEAAAKTEGFSGREIAKLMAS-VQA 604
P L +D+ + + A +TEGFSG +I L S V
Sbjct: 1117 ------KNTP------------------LNEDVDIHDMAKRTEGFSGADITNLCQSAVNE 1152
Query: 605 AV 606
A+
Sbjct: 1153 AI 1154
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 403 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKKSKRG 460
+L +G PGTGKT A+ +A +S ++ G ++ +G ++ K+ ++F A + K
Sbjct: 564 VLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIG-ESEQKLRKIFKKASE-KTP 621
Query: 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLAL-ATNRPGDLDSAV- 518
++FIDE D+ +R+K+ +R L G + + VL L ATNRP +D A+
Sbjct: 622 CIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALR 681
Query: 519 -ADRIDEVLEFPLPGQEERFKLL 540
R D +E P+P ++ R+++L
Sbjct: 682 RFGRFDREIEIPVPDEQGRYEIL 704
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDSTGRLEILQIH 384
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRK 663
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDSTGRLEILQIH 384
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRK 663
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKS 457
P + +L YGPPG GKT+ A+ LA + + + G + V + +H+LF+ AK+
Sbjct: 172 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKE- 230
Query: 458 KRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALATNRPGD 513
K ++FIDE DA +R E R+ + L G D S ++ + ATNRP
Sbjct: 231 KAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDI 290
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
LD A+ R D ++E PLP + R ++LK++
Sbjct: 291 LDPALLRPGRFDRLIEVPLPNFKSRLEILKIH 322
>sp|O80983|FTSH4_ARATH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial
OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2
Length = 717
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 42/225 (18%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL--GPQAVTKIHQLFDWAKKSK 458
+ +L GPPGTGKTM AR +A ++G+ + +G + + G A ++ LF AKK
Sbjct: 261 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGA-RRVRDLFSAAKKCS 319
Query: 459 RGLLLFIDEADAFLCERN---KTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513
++FIDE DA RN + YM + LN +L Q++ I++ ATN P
Sbjct: 320 -PCIIFIDEIDAIGGSRNPKDQQYM----KMTLNQMLVELDGFKQNEGIIVVAATNFPES 374
Query: 514 LDSAVA--DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 571
LD A+ R D + P P E R ++L+ ++ K + K+E
Sbjct: 375 LDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSK---------------VLKAE----- 414
Query: 572 IKGLTDDILMEAAAKTEGFSGREIAKL--MASVQAAVYGSENCVL 614
D LM A T GFSG ++A L +A+++AA+ GS++ +
Sbjct: 415 -----DVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTM 454
>sp|B2JVU2|FTSH_BURP8 ATP-dependent zinc metalloprotease FtsH OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=ftsH PE=3 SV=1
Length = 645
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 39/247 (15%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPGTGKT+ AR +A ++G+ + ++G + V ++ LF+ A+K
Sbjct: 193 KGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRDLFEQARKHAP 252
Query: 460 GLLLFIDEADAFLCERNKTYMS----EAQRSALNALL--FRTGDQSKDIVLALATNRPGD 513
++FIDE D+ R + + + LN LL D S +VL ATNRP
Sbjct: 253 A-IVFIDELDSLGRARGSAFPGGGGHDEKEQTLNQLLAELDGFDTSIGVVLLAATNRPEI 311
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 571
LD A+ A R D + P ++ R ++L+++L K IA A PG+
Sbjct: 312 LDPALLRAGRFDRQVLVDRPDKKGRAQILEVHLKK-IALA----PGVP------------ 354
Query: 572 IKGLTDDILMEAAAKTEGFSGREIAKLM--ASVQAAVYGSENCVLDPSLFREVVDYKVAE 629
DDI AA T GFSG ++A L+ A++ A +EN LD F + ++ VA
Sbjct: 355 ----VDDI----AALTPGFSGADLANLVNEAAILATRRHAENVSLDD--FTQAIERIVAG 404
Query: 630 HQQRRKL 636
++R +L
Sbjct: 405 LEKRNRL 411
>sp|Q3ZBT1|TERA_BOVIN Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2
SV=1
Length = 806
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1
SV=5
Length = 806
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus
GN=Vcp PE=1 SV=3
Length = 806
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp
PE=1 SV=4
Length = 806
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP
PE=1 SV=4
Length = 806
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKS 457
P + +L YGPPGTGKT+ A+ +A ++ + + G + V + + + +F AK+
Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKE- 261
Query: 458 KRGLLLFIDEADAFLCERNKTYMS---EAQRSALNALLFRTG-DQSKDIVLALATNRPGD 513
K ++FIDE DA +R E QR+ + L G D D+ + ATNRP
Sbjct: 262 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 321
Query: 514 LDSAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
LD A+ R D ++E P P ++ R ++LK++
Sbjct: 322 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 353
>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp
PE=1 SV=1
Length = 806
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-APLGPQAVTKIHQLFDWAKKS 457
P R +L YGPPGTGKT+ AR +A ++G + L+ G ++ + L ++ + + + F+ A+K+
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Query: 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA +R KT+ E +R ++ LL Q +++ ATNRP +D
Sbjct: 297 APA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLY 543
A+ R D ++ +P R ++L+++
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIH 384
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQLFDWAKK 456
P + +LFYGPPG GKT+ A+ +A + ++ + G ++ + ++ + ++FD A++
Sbjct: 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568
Query: 457 SKRGLLLFIDEADAFLCER--NKTYMSEAQRSALNALLFRTGDQS--KDIVLALATNRPG 512
+ +LF DE D+ R N A +N +L S K++ + ATNRP
Sbjct: 569 AA-PCVLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKKNVFIIGATNRPD 627
Query: 513 DLDSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDK 546
+D A+ R+D+++ PLP ++ R +LK L K
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRK 663
>sp|D0MGU8|FTSH_RHOM4 ATP-dependent zinc metalloprotease FtsH OS=Rhodothermus marinus
(strain ATCC 43812 / DSM 4252 / R-10) GN=ftsH PE=3 SV=1
Length = 697
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 40/249 (16%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L GPPGTGKT+ A+ +A ++G+ + ++G D V ++ LF AK+ K
Sbjct: 245 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFRQAKE-KA 303
Query: 460 GLLLFIDEADAFLCERNKTYM---SEAQRSALNALLFRTG--DQSKDIVLALATNRPGDL 514
++FIDE DA R + M ++ + + LN LL + K +++ ATNRP L
Sbjct: 304 PCIIFIDEIDAIGRSRGRGIMMGANDERENTLNQLLVEMDGFNTDKGVIIMAATNRPDVL 363
Query: 515 DSAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
D A+ R D + P + ER ++ K++ I
Sbjct: 364 DPALLRPGRFDRQILIDKPDRRERLEIFKVHTRDLI------------------------ 399
Query: 573 KGLTDDILMEA-AAKTEGFSGREIAKLM--ASVQAAVYGSENCVLDPSLFREVVDYKVAE 629
L DD+ +E A +T GF+G EIA + A++ AA G E ++ F + +D +A
Sbjct: 400 --LGDDVDLEVLAGQTPGFAGAEIANVCNEAALLAARKGKEAVEMED--FEQAIDRVIAG 455
Query: 630 HQQRRKLAA 638
+++ K+ +
Sbjct: 456 LEKKNKIIS 464
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 39/228 (17%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAPLGPQAVTKIHQLFDWAK 455
P+R +L +GPPGTGK+ A+ +A ++ +++ + ++ ++ + LF+ A+
Sbjct: 158 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELAR 217
Query: 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATNRPG 512
+ K ++FIDE D+ RN+ SEA R L + G+ + ++ ATN P
Sbjct: 218 QHKPS-IIFIDEVDSLCGSRNENE-SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPW 275
Query: 513 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
LDSA+ R ++ + PLP + R ++ +L+L GS
Sbjct: 276 VLDSAIRRRFEKRIYIPLPEEAARAQMFRLHL-------GSTP----------------- 311
Query: 573 KGLTDDILMEAAAKTEGFSGREIAKLMAS--------VQAAVYGSENC 612
LTD + E A KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 312 HNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 39/228 (17%)
Query: 398 APFRNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAPLGPQAVTKIHQLFDWAK 455
P+R +L +GPPGTGK+ A+ +A ++ +++ + ++ ++ + LF+ A+
Sbjct: 158 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELAR 217
Query: 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---TGDQSKDIVLALATNRPG 512
+ K ++FIDE D+ RN+ SEA R L + G+ + ++ ATN P
Sbjct: 218 QHKPS-IIFIDEVDSLCGSRNENE-SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPW 275
Query: 513 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572
LDSA+ R ++ + PLP + R ++ +L+L GS
Sbjct: 276 VLDSAIRRRFEKRIYIPLPEEAARAQMFRLHL-------GSTP----------------- 311
Query: 573 KGLTDDILMEAAAKTEGFSGREIAKLMAS--------VQAAVYGSENC 612
LTD + E A KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 312 HNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|Q83FV7|FTSH_TROWT ATP-dependent zinc metalloprotease FtsH OS=Tropheryma whipplei
(strain Twist) GN=ftsH PE=3 SV=1
Length = 666
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 33/243 (13%)
Query: 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAPLGPQAVTKIHQLFDWAKKSKR 459
+ +L +GPPGTGKT+ AR +A ++G+ + ++G D V +++ LF+ AK++
Sbjct: 196 KGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKQNSP 255
Query: 460 GLLLFIDEADAFLCERNKTYMS--EAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515
++FIDE DA R + + + LN LL D +I+L ATNR LD
Sbjct: 256 S-IIFIDEIDAVGRRRGSGFGGGHDEREQTLNQLLVEMDGFDVKTNIILIAATNRSDVLD 314
Query: 516 SAV--ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573
SA+ R D + P + R K+L+ VH K + ++++
Sbjct: 315 SALLRPGRFDRHVAIDAPNLQGRLKILQ-----------------VHARTKPVSKSVDLE 357
Query: 574 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQR 633
L A KT GF+G ++A ++ S ++D E VD +A Q+R
Sbjct: 358 VL--------ARKTPGFTGADLANVLNEAALLTARSNAQIIDDRALDEAVDRVMAGPQRR 409
Query: 634 RKL 636
++
Sbjct: 410 SRV 412
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,678,991
Number of Sequences: 539616
Number of extensions: 9512083
Number of successful extensions: 57748
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 3343
Number of HSP's that attempted gapping in prelim test: 45183
Number of HSP's gapped (non-prelim): 10055
length of query: 644
length of database: 191,569,459
effective HSP length: 124
effective length of query: 520
effective length of database: 124,657,075
effective search space: 64821679000
effective search space used: 64821679000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)