Query 006458
Match_columns 644
No_of_seqs 558 out of 3774
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0742 AAA+-type ATPase [Post 100.0 6E-131 1E-135 1007.1 62.4 625 1-642 1-628 (630)
2 PF12037 DUF3523: Domain of un 100.0 1.8E-66 4E-71 518.7 34.3 261 75-335 16-276 (276)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2E-36 4.3E-41 309.5 18.9 241 363-629 143-395 (406)
4 COG1223 Predicted ATPase (AAA+ 100.0 4.1E-34 8.8E-39 280.2 17.2 234 365-625 115-354 (368)
5 KOG0730 AAA+-type ATPase [Post 100.0 7.9E-34 1.7E-38 309.4 18.7 240 364-630 427-678 (693)
6 KOG0734 AAA+-type ATPase conta 100.0 5E-34 1.1E-38 302.1 16.3 241 367-636 300-551 (752)
7 KOG0738 AAA+-type ATPase [Post 100.0 3.7E-32 8E-37 279.6 18.8 242 360-627 201-470 (491)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 1.1E-31 2.5E-36 288.3 17.2 240 365-629 505-772 (802)
9 KOG0731 AAA+-type ATPase conta 100.0 6.6E-31 1.4E-35 294.8 19.6 243 365-632 305-559 (774)
10 CHL00195 ycf46 Ycf46; Provisio 100.0 3.1E-30 6.7E-35 284.8 23.2 239 366-629 223-466 (489)
11 PTZ00454 26S protease regulato 100.0 1.1E-29 2.4E-34 274.8 23.4 247 364-636 138-396 (398)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-29 2.9E-34 272.5 18.7 209 367-602 186-407 (802)
13 KOG0739 AAA+-type ATPase [Post 100.0 2.6E-30 5.6E-35 257.6 10.2 212 362-599 124-343 (439)
14 KOG0727 26S proteasome regulat 100.0 1.6E-28 3.5E-33 239.8 22.2 283 320-629 105-399 (408)
15 TIGR01241 FtsH_fam ATP-depende 100.0 9.4E-29 2E-33 277.0 21.1 239 365-629 49-298 (495)
16 PRK03992 proteasome-activating 100.0 2.3E-28 4.9E-33 265.5 22.7 243 364-632 124-378 (389)
17 KOG0737 AAA+-type ATPase [Post 100.0 3.8E-28 8.3E-33 250.3 19.9 209 365-600 86-305 (386)
18 CHL00176 ftsH cell division pr 100.0 6.4E-28 1.4E-32 274.1 23.1 240 365-630 177-427 (638)
19 COG0464 SpoVK ATPases of the A 100.0 1.7E-27 3.6E-32 267.4 22.7 238 364-626 235-483 (494)
20 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-27 3.5E-32 278.7 22.7 238 365-628 447-712 (733)
21 KOG0736 Peroxisome assembly fa 100.0 9.7E-28 2.1E-32 264.0 19.1 239 364-628 665-934 (953)
22 PTZ00361 26 proteosome regulat 100.0 1.7E-27 3.7E-32 259.4 20.9 239 364-628 176-426 (438)
23 COG0465 HflB ATP-dependent Zn 100.0 4.9E-28 1.1E-32 267.7 15.7 243 365-635 144-399 (596)
24 KOG0729 26S proteasome regulat 99.9 2.6E-27 5.6E-32 232.9 14.2 242 364-631 170-423 (435)
25 TIGR01242 26Sp45 26S proteasom 99.9 2.7E-26 5.9E-31 247.8 21.2 237 364-626 115-363 (364)
26 KOG0652 26S proteasome regulat 99.9 1.8E-26 4E-31 226.4 16.2 241 364-630 164-416 (424)
27 KOG0728 26S proteasome regulat 99.9 2.4E-26 5.2E-31 224.4 16.8 238 364-627 140-389 (404)
28 KOG0735 AAA+-type ATPase [Post 99.9 1.9E-26 4.1E-31 251.6 17.1 210 368-604 664-883 (952)
29 COG0542 clpA ATP-binding subun 99.9 1.7E-25 3.7E-30 253.3 25.5 234 317-600 456-748 (786)
30 PRK10733 hflB ATP-dependent me 99.9 6.5E-26 1.4E-30 260.3 18.8 237 367-629 148-395 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.1E-25 2.4E-30 267.9 20.4 207 398-634 1628-1885(2281)
32 KOG0726 26S proteasome regulat 99.9 1.3E-26 2.9E-31 230.5 9.8 241 363-629 177-429 (440)
33 TIGR03689 pup_AAA proteasome A 99.9 6.6E-25 1.4E-29 242.2 24.2 253 363-630 174-482 (512)
34 PLN00020 ribulose bisphosphate 99.9 8.7E-24 1.9E-28 220.4 21.1 166 396-589 144-330 (413)
35 KOG0740 AAA+-type ATPase [Post 99.9 1.8E-24 3.9E-29 230.7 15.8 238 364-627 146-405 (428)
36 COG0466 Lon ATP-dependent Lon 99.9 5.8E-23 1.3E-27 226.6 27.3 277 317-632 289-590 (782)
37 KOG2004 Mitochondrial ATP-depe 99.9 5.4E-22 1.2E-26 217.5 27.2 247 315-600 375-643 (906)
38 TIGR00763 lon ATP-dependent pr 99.9 4.2E-21 9.1E-26 225.5 34.7 268 316-627 285-587 (775)
39 KOG0651 26S proteasome regulat 99.9 2.6E-23 5.5E-28 209.3 12.8 235 367-627 128-374 (388)
40 PRK10865 protein disaggregatio 99.9 5.8E-21 1.3E-25 225.4 34.6 235 316-600 532-822 (857)
41 TIGR01243 CDC48 AAA family ATP 99.9 3.6E-22 7.8E-27 233.8 21.7 236 365-627 172-436 (733)
42 PF05496 RuvB_N: Holliday junc 99.9 3.2E-22 6.8E-27 196.7 17.1 192 366-602 19-225 (233)
43 KOG0730 AAA+-type ATPase [Post 99.9 6.1E-22 1.3E-26 216.8 18.5 223 371-625 184-415 (693)
44 KOG0741 AAA+-type ATPase [Post 99.9 5.7E-23 1.2E-27 218.4 8.5 211 398-629 254-493 (744)
45 COG2255 RuvB Holliday junction 99.9 4.4E-21 9.5E-26 191.7 21.0 216 366-626 21-251 (332)
46 TIGR03346 chaperone_ClpB ATP-d 99.9 1.1E-19 2.4E-24 215.3 35.2 235 316-600 529-819 (852)
47 TIGR03345 VI_ClpV1 type VI sec 99.9 8.9E-20 1.9E-24 214.8 32.7 235 316-600 530-824 (852)
48 KOG0744 AAA+-type ATPase [Post 99.9 1.3E-20 2.9E-25 190.5 18.2 252 369-630 140-418 (423)
49 PRK00080 ruvB Holliday junctio 99.9 7.2E-20 1.6E-24 195.1 23.9 216 366-626 20-250 (328)
50 CHL00181 cbbX CbbX; Provisiona 99.9 2.3E-20 4.9E-25 194.6 19.4 172 370-548 22-213 (287)
51 PRK12323 DNA polymerase III su 99.8 2.8E-20 6.2E-25 207.2 20.0 205 364-622 9-245 (700)
52 TIGR00635 ruvB Holliday juncti 99.8 9.3E-20 2E-24 192.2 22.9 212 369-625 2-228 (305)
53 TIGR02881 spore_V_K stage V sp 99.8 4.6E-20 9.9E-25 190.4 19.8 199 370-600 5-232 (261)
54 KOG0732 AAA+-type ATPase conta 99.8 1.2E-20 2.6E-25 217.4 17.0 210 365-600 259-483 (1080)
55 PRK14956 DNA polymerase III su 99.8 7.3E-20 1.6E-24 199.6 22.0 207 364-624 11-244 (484)
56 TIGR02639 ClpA ATP-dependent C 99.8 4.9E-20 1.1E-24 215.4 22.2 235 316-600 418-705 (731)
57 PRK11034 clpA ATP-dependent Cl 99.8 4.5E-20 9.8E-25 213.6 21.5 237 317-599 423-708 (758)
58 PRK07003 DNA polymerase III su 99.8 5.3E-20 1.1E-24 207.3 21.1 205 364-622 9-240 (830)
59 PRK10787 DNA-binding ATP-depen 99.8 1.6E-18 3.6E-23 202.1 32.2 269 317-630 288-586 (784)
60 COG2256 MGS1 ATPase related to 99.8 1.2E-19 2.5E-24 189.6 20.0 216 366-628 19-240 (436)
61 PRK14960 DNA polymerase III su 99.8 2.8E-19 6E-24 199.8 22.2 207 364-624 8-241 (702)
62 PRK14958 DNA polymerase III su 99.8 2.1E-19 4.5E-24 200.7 20.7 208 364-625 9-243 (509)
63 PRK14962 DNA polymerase III su 99.8 5.3E-19 1.1E-23 195.6 22.5 208 364-625 7-241 (472)
64 PRK07994 DNA polymerase III su 99.8 5.3E-19 1.2E-23 200.1 22.2 207 364-624 9-242 (647)
65 TIGR02880 cbbX_cfxQ probable R 99.8 4.1E-19 8.9E-24 185.2 19.5 199 371-600 22-247 (284)
66 PLN03025 replication factor C 99.8 5.2E-19 1.1E-23 187.7 20.1 206 364-622 6-219 (319)
67 PRK06645 DNA polymerase III su 99.8 9.9E-19 2.1E-23 194.2 22.9 210 364-625 14-255 (507)
68 PRK14949 DNA polymerase III su 99.8 1E-18 2.2E-23 200.4 22.8 187 364-600 9-222 (944)
69 PF00004 AAA: ATPase family as 99.8 2.5E-19 5.4E-24 164.1 14.2 127 403-530 1-132 (132)
70 KOG0989 Replication factor C, 99.8 4.7E-19 1E-23 179.0 17.1 215 364-627 29-267 (346)
71 PRK14951 DNA polymerase III su 99.8 1.1E-18 2.5E-23 197.1 21.8 207 364-624 9-247 (618)
72 PRK08691 DNA polymerase III su 99.8 1.1E-18 2.4E-23 196.7 21.4 209 364-626 9-244 (709)
73 PRK14964 DNA polymerase III su 99.8 1.5E-18 3.3E-23 191.3 21.5 207 364-624 6-239 (491)
74 CHL00095 clpC Clp protease ATP 99.8 1.3E-18 2.7E-23 205.8 21.8 236 315-600 472-775 (821)
75 PRK04195 replication factor C 99.8 2.1E-18 4.5E-23 193.0 22.4 210 364-623 7-222 (482)
76 PRK14961 DNA polymerase III su 99.8 2.3E-18 5E-23 185.8 22.0 207 364-624 9-242 (363)
77 PRK14952 DNA polymerase III su 99.8 5.1E-18 1.1E-22 191.2 22.6 207 364-623 6-241 (584)
78 PRK14957 DNA polymerase III su 99.8 5.6E-18 1.2E-22 189.2 22.5 207 364-624 9-242 (546)
79 PRK05563 DNA polymerase III su 99.8 7.3E-18 1.6E-22 190.7 23.1 206 364-623 9-241 (559)
80 PRK14963 DNA polymerase III su 99.8 6.2E-18 1.3E-22 188.5 21.7 206 364-624 7-238 (504)
81 PRK14969 DNA polymerase III su 99.8 4.8E-18 1E-22 190.9 20.3 207 364-624 9-242 (527)
82 PRK14959 DNA polymerase III su 99.8 6.1E-18 1.3E-22 190.0 21.0 209 364-623 9-241 (624)
83 PRK07764 DNA polymerase III su 99.8 6.9E-18 1.5E-22 196.8 21.8 206 364-622 8-242 (824)
84 PHA02544 44 clamp loader, smal 99.8 2.7E-17 5.8E-22 174.3 24.0 213 364-622 14-227 (316)
85 KOG0743 AAA+-type ATPase [Post 99.8 3.9E-18 8.5E-23 181.1 17.0 174 364-545 194-384 (457)
86 PRK14965 DNA polymerase III su 99.8 1.2E-17 2.7E-22 189.6 20.8 205 364-622 9-240 (576)
87 PRK14953 DNA polymerase III su 99.8 2.1E-17 4.6E-22 183.6 21.7 207 364-624 9-242 (486)
88 COG2812 DnaX DNA polymerase II 99.8 8.3E-18 1.8E-22 184.9 17.0 212 364-624 9-242 (515)
89 PRK09111 DNA polymerase III su 99.8 3.8E-17 8.2E-22 185.1 22.8 213 364-625 17-256 (598)
90 PRK05896 DNA polymerase III su 99.8 2.9E-17 6.4E-22 183.7 21.1 205 364-622 9-240 (605)
91 PRK08451 DNA polymerase III su 99.8 4.7E-17 1E-21 181.0 22.2 205 364-622 7-238 (535)
92 KOG0736 Peroxisome assembly fa 99.8 3.9E-17 8.5E-22 180.9 20.9 205 401-632 432-659 (953)
93 KOG0735 AAA+-type ATPase [Post 99.8 5.6E-17 1.2E-21 178.1 21.5 238 371-639 408-661 (952)
94 PRK07133 DNA polymerase III su 99.8 4.4E-17 9.5E-22 185.6 21.6 211 364-623 11-240 (725)
95 PRK13342 recombination factor 99.8 7.4E-17 1.6E-21 177.1 22.7 206 365-626 6-219 (413)
96 PRK12402 replication factor C 99.7 8.6E-17 1.9E-21 171.6 21.6 211 364-625 8-248 (337)
97 PRK06893 DNA replication initi 99.7 7.8E-17 1.7E-21 163.1 19.9 210 365-624 10-228 (229)
98 TIGR02639 ClpA ATP-dependent C 99.7 6E-17 1.3E-21 189.5 21.7 227 366-627 177-430 (731)
99 TIGR02397 dnaX_nterm DNA polym 99.7 9.9E-17 2.1E-21 172.6 21.5 207 364-624 7-240 (355)
100 PRK06305 DNA polymerase III su 99.7 1.5E-16 3.3E-21 175.7 22.7 208 365-623 11-243 (451)
101 PRK06647 DNA polymerase III su 99.7 1.2E-16 2.7E-21 180.2 21.9 206 364-623 9-241 (563)
102 PRK14955 DNA polymerase III su 99.7 1.1E-16 2.3E-21 174.9 20.5 210 364-623 9-254 (397)
103 PRK14970 DNA polymerase III su 99.7 2.4E-16 5.3E-21 170.6 23.0 212 364-624 10-231 (367)
104 PRK14954 DNA polymerase III su 99.7 3.1E-16 6.8E-21 178.0 22.8 215 364-623 9-254 (620)
105 PRK00440 rfc replication facto 99.7 3.5E-16 7.5E-21 165.6 21.1 206 364-625 10-225 (319)
106 TIGR02902 spore_lonB ATP-depen 99.7 2.2E-16 4.8E-21 177.9 20.4 220 364-627 58-333 (531)
107 PRK07940 DNA polymerase III su 99.7 2.6E-16 5.7E-21 170.4 19.3 181 369-595 3-211 (394)
108 PRK08084 DNA replication initi 99.7 5.5E-16 1.2E-20 157.5 20.2 208 365-624 16-234 (235)
109 KOG2028 ATPase related to the 99.7 2.8E-16 6.1E-21 161.4 17.9 224 366-626 133-368 (554)
110 PRK14950 DNA polymerase III su 99.7 4.6E-16 9.9E-21 177.6 21.8 207 364-624 9-243 (585)
111 PRK14948 DNA polymerase III su 99.7 6.9E-16 1.5E-20 176.0 22.5 205 364-623 9-242 (620)
112 TIGR00382 clpX endopeptidase C 99.7 5.3E-16 1.1E-20 168.0 19.9 239 371-620 77-405 (413)
113 PRK05342 clpX ATP-dependent pr 99.7 3.3E-16 7E-21 170.5 18.3 238 372-620 72-399 (412)
114 PRK13341 recombination factor 99.7 6E-16 1.3E-20 178.7 21.3 218 365-626 22-247 (725)
115 PRK00149 dnaA chromosomal repl 99.7 2.1E-16 4.6E-21 175.5 16.7 222 365-627 116-350 (450)
116 TIGR03345 VI_ClpV1 type VI sec 99.7 1.3E-15 2.9E-20 179.7 24.2 192 366-592 182-391 (852)
117 PTZ00112 origin recognition co 99.7 1.2E-15 2.7E-20 172.6 22.6 222 368-626 752-1006(1164)
118 TIGR02928 orc1/cdc6 family rep 99.7 3.5E-15 7.6E-20 161.2 25.2 224 368-627 12-275 (365)
119 TIGR00362 DnaA chromosomal rep 99.7 4.6E-16 1E-20 170.6 18.1 222 365-627 104-338 (405)
120 PRK11034 clpA ATP-dependent Cl 99.7 1.2E-15 2.6E-20 177.0 21.8 225 367-626 182-433 (758)
121 TIGR00390 hslU ATP-dependent p 99.7 1.6E-15 3.5E-20 162.2 20.8 243 371-628 12-432 (441)
122 PRK05201 hslU ATP-dependent pr 99.7 1.4E-15 3E-20 162.7 20.1 243 371-628 15-434 (443)
123 PRK14086 dnaA chromosomal repl 99.7 8E-16 1.7E-20 172.3 18.9 224 365-628 282-517 (617)
124 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.5E-15 3.2E-20 152.9 18.6 204 367-623 11-225 (226)
125 PRK12422 chromosomal replicati 99.7 1.3E-15 2.7E-20 167.9 19.5 227 365-627 105-344 (445)
126 PRK00411 cdc6 cell division co 99.7 1.4E-14 3E-19 158.2 27.5 225 369-627 28-283 (394)
127 PRK08903 DnaA regulatory inact 99.7 3.9E-15 8.5E-20 150.3 21.5 204 364-624 11-224 (227)
128 PRK14971 DNA polymerase III su 99.7 2.8E-15 6.1E-20 171.0 22.0 206 364-623 10-243 (614)
129 PRK05642 DNA replication initi 99.7 2.1E-15 4.6E-20 153.1 18.7 214 364-624 12-233 (234)
130 PRK14088 dnaA chromosomal repl 99.7 1.2E-15 2.6E-20 168.4 17.1 222 365-627 99-333 (440)
131 PRK08727 hypothetical protein; 99.7 4E-15 8.6E-20 151.0 19.5 208 365-625 13-230 (233)
132 PRK06620 hypothetical protein; 99.7 4.3E-15 9.3E-20 148.6 19.2 200 364-623 9-213 (214)
133 PRK10865 protein disaggregatio 99.6 2.4E-15 5.2E-20 178.0 17.7 169 366-549 173-359 (857)
134 PF00308 Bac_DnaA: Bacterial d 99.6 4.2E-15 9.1E-20 149.3 16.5 200 366-605 3-215 (219)
135 PRK14087 dnaA chromosomal repl 99.6 9.6E-15 2.1E-19 161.4 20.4 225 367-626 111-348 (450)
136 COG1224 TIP49 DNA helicase TIP 99.6 6E-14 1.3E-18 144.4 23.3 133 460-630 292-436 (450)
137 KOG0991 Replication factor C, 99.6 3.1E-15 6.8E-20 145.7 12.7 195 364-609 20-222 (333)
138 TIGR03346 chaperone_ClpB ATP-d 99.6 8.5E-15 1.8E-19 173.9 18.6 170 366-550 168-355 (852)
139 PF05673 DUF815: Protein of un 99.6 3.2E-14 7E-19 142.1 19.1 197 365-602 21-245 (249)
140 KOG1051 Chaperone HSP104 and r 99.6 2.1E-14 4.4E-19 165.7 19.2 195 317-547 527-787 (898)
141 CHL00095 clpC Clp protease ATP 99.6 5.1E-14 1.1E-18 166.8 22.7 189 368-592 176-382 (821)
142 COG1474 CDC6 Cdc6-related prot 99.6 1.3E-13 2.8E-18 148.1 22.4 221 373-628 19-267 (366)
143 TIGR02640 gas_vesic_GvpN gas v 99.6 1.4E-13 3E-18 142.2 21.2 131 402-544 23-198 (262)
144 PRK09112 DNA polymerase III su 99.6 1.3E-13 2.8E-18 147.6 19.6 158 366-543 18-212 (351)
145 TIGR02903 spore_lon_C ATP-depe 99.5 3.5E-12 7.6E-17 146.2 31.0 218 366-627 149-431 (615)
146 PRK05564 DNA polymerase III su 99.5 1.7E-13 3.7E-18 145.2 18.6 153 369-544 2-165 (313)
147 PRK09087 hypothetical protein; 99.5 1.9E-13 4E-18 138.0 18.0 204 364-626 14-222 (226)
148 COG0593 DnaA ATPase involved i 99.5 2.7E-13 5.9E-18 145.5 18.8 227 364-631 80-318 (408)
149 PRK07471 DNA polymerase III su 99.5 2.7E-13 5.9E-18 145.8 18.6 159 365-544 13-213 (365)
150 PF06068 TIP49: TIP49 C-termin 99.5 5.8E-13 1.3E-17 139.5 18.8 103 460-600 279-393 (398)
151 TIGR00678 holB DNA polymerase 99.5 4.9E-13 1.1E-17 131.1 16.5 146 397-589 11-183 (188)
152 PRK13407 bchI magnesium chelat 99.5 1.6E-12 3.4E-17 137.9 20.0 247 367-631 4-310 (334)
153 PRK07399 DNA polymerase III su 99.5 7.6E-13 1.6E-17 139.8 17.4 155 369-544 2-195 (314)
154 CHL00081 chlI Mg-protoporyphyr 99.5 5.3E-12 1.1E-16 134.2 22.8 246 366-630 12-326 (350)
155 PRK04132 replication factor C 99.5 1.1E-12 2.4E-17 152.5 18.6 175 399-621 563-749 (846)
156 PRK05707 DNA polymerase III su 99.5 1.7E-12 3.7E-17 137.9 17.7 131 397-543 19-177 (328)
157 COG2204 AtoC Response regulato 99.4 1.8E-12 3.8E-17 141.2 16.9 258 289-601 81-369 (464)
158 TIGR03015 pepcterm_ATPase puta 99.4 2.5E-11 5.4E-16 125.5 24.5 196 401-626 44-266 (269)
159 COG1219 ClpX ATP-dependent pro 99.4 5.5E-12 1.2E-16 128.4 18.8 220 373-607 63-369 (408)
160 PF07724 AAA_2: AAA domain (Cd 99.4 1.2E-13 2.6E-18 133.3 6.6 111 399-511 2-130 (171)
161 KOG2035 Replication factor C, 99.4 1.1E-11 2.3E-16 124.2 19.1 190 365-606 7-233 (351)
162 TIGR02030 BchI-ChlI magnesium 99.4 1.3E-11 2.7E-16 131.3 20.8 243 369-630 2-313 (337)
163 TIGR00602 rad24 checkpoint pro 99.4 9.3E-12 2E-16 141.6 21.0 210 364-608 77-330 (637)
164 cd00009 AAA The AAA+ (ATPases 99.4 4.5E-12 9.7E-17 116.6 15.2 122 400-530 19-151 (151)
165 COG0470 HolB ATPase involved i 99.4 2.4E-12 5.1E-17 136.5 15.0 150 372-541 2-178 (325)
166 PRK13531 regulatory ATPase Rav 99.4 1.3E-11 2.8E-16 135.0 20.5 233 370-627 19-284 (498)
167 TIGR01650 PD_CobS cobaltochela 99.4 2.6E-12 5.6E-17 134.6 14.1 133 401-544 65-233 (327)
168 COG3829 RocR Transcriptional r 99.4 4.4E-12 9.5E-17 138.1 16.0 211 360-603 234-476 (560)
169 COG0714 MoxR-like ATPases [Gen 99.4 6.3E-12 1.4E-16 134.2 17.2 239 371-628 24-298 (329)
170 COG2607 Predicted ATPase (AAA+ 99.4 1.7E-11 3.6E-16 120.7 18.5 167 363-550 52-245 (287)
171 KOG0742 AAA+-type ATPase [Post 99.4 6.4E-10 1.4E-14 116.5 31.0 219 14-253 5-230 (630)
172 KOG1942 DNA helicase, TBP-inte 99.4 2.2E-11 4.8E-16 122.5 18.9 129 460-628 297-440 (456)
173 TIGR02442 Cob-chelat-sub cobal 99.4 1.9E-11 4.1E-16 141.0 21.3 241 369-631 2-309 (633)
174 PRK08058 DNA polymerase III su 99.4 3.8E-12 8.1E-17 135.7 14.3 149 370-542 4-180 (329)
175 PHA02244 ATPase-like protein 99.4 7.6E-12 1.6E-16 132.5 16.3 125 402-540 121-269 (383)
176 smart00350 MCM minichromosome 99.4 1.3E-11 2.7E-16 139.1 19.2 249 370-627 202-505 (509)
177 TIGR01817 nifA Nif-specific re 99.4 1.5E-11 3.3E-16 139.7 17.7 216 367-620 192-439 (534)
178 COG1220 HslU ATP-dependent pro 99.4 2.3E-11 5.1E-16 124.7 16.9 153 461-628 252-435 (444)
179 PF13177 DNA_pol3_delta2: DNA 99.3 9.7E-12 2.1E-16 119.1 13.3 135 375-532 1-162 (162)
180 TIGR02974 phageshock_pspF psp 99.3 1.8E-11 4E-16 130.3 16.2 196 373-600 1-227 (329)
181 KOG0990 Replication factor C, 99.3 1E-11 2.2E-16 126.9 12.6 191 364-605 34-236 (360)
182 KOG0745 Putative ATP-dependent 99.3 4.1E-11 9E-16 126.3 17.1 193 401-608 227-511 (564)
183 PRK06871 DNA polymerase III su 99.3 9E-11 2E-15 124.0 19.5 129 399-543 23-178 (325)
184 PRK07993 DNA polymerase III su 99.3 6.3E-11 1.4E-15 126.2 17.6 129 398-542 22-178 (334)
185 PRK08769 DNA polymerase III su 99.3 8.6E-11 1.9E-15 124.0 17.6 130 400-542 26-183 (319)
186 KOG2680 DNA helicase TIP49, TB 99.3 1.1E-10 2.3E-15 118.0 17.2 134 460-631 289-434 (454)
187 TIGR00368 Mg chelatase-related 99.3 6.7E-11 1.4E-15 132.0 17.1 227 368-625 189-498 (499)
188 PRK15424 propionate catabolism 99.3 9.8E-11 2.1E-15 131.5 18.0 202 368-602 216-461 (538)
189 PF07728 AAA_5: AAA domain (dy 99.3 1.3E-11 2.8E-16 114.8 9.2 110 402-522 1-139 (139)
190 PF05621 TniB: Bacterial TniB 99.3 3.3E-10 7.1E-15 116.9 20.3 223 370-622 33-285 (302)
191 PRK11608 pspF phage shock prot 99.3 1.3E-10 2.7E-15 123.9 17.7 196 370-601 5-235 (326)
192 TIGR02031 BchD-ChlD magnesium 99.3 1E-10 2.2E-15 133.6 18.1 221 400-630 16-262 (589)
193 KOG1969 DNA replication checkp 99.3 1.1E-10 2.4E-15 129.9 17.4 167 401-607 327-516 (877)
194 TIGR00764 lon_rel lon-related 99.3 4.7E-10 1E-14 128.4 22.9 144 461-632 219-397 (608)
195 COG0542 clpA ATP-binding subun 99.3 8.4E-11 1.8E-15 134.6 16.3 171 367-552 166-354 (786)
196 TIGR02329 propionate_PrpR prop 99.3 7.5E-11 1.6E-15 132.5 15.7 214 367-620 208-464 (526)
197 PRK10820 DNA-binding transcrip 99.3 1.6E-10 3.4E-15 130.7 18.3 200 364-600 197-431 (520)
198 PRK06964 DNA polymerase III su 99.2 6.7E-11 1.5E-15 125.8 14.2 132 398-542 19-202 (342)
199 PF01078 Mg_chelatase: Magnesi 99.2 3.4E-12 7.3E-17 125.2 3.4 142 370-535 2-206 (206)
200 COG1221 PspF Transcriptional r 99.2 1.4E-10 3E-15 124.5 15.8 204 367-606 74-309 (403)
201 PRK05022 anaerobic nitric oxid 99.2 4.6E-10 9.9E-15 126.7 20.2 198 369-603 185-417 (509)
202 PRK06090 DNA polymerase III su 99.2 2.2E-10 4.8E-15 120.7 16.3 130 397-542 22-178 (319)
203 PRK15429 formate hydrogenlyase 99.2 5.3E-10 1.2E-14 130.7 20.3 199 367-602 372-605 (686)
204 PRK11388 DNA-binding transcrip 99.2 5.1E-10 1.1E-14 130.0 19.7 214 367-622 321-567 (638)
205 COG0464 SpoVK ATPases of the A 99.2 3.5E-10 7.6E-15 127.4 17.6 204 397-628 15-228 (494)
206 PRK08116 hypothetical protein; 99.2 2.4E-10 5.3E-15 118.3 14.4 162 369-544 83-260 (268)
207 COG0606 Predicted ATPase with 99.2 2.7E-10 5.9E-15 122.7 15.1 228 368-626 176-485 (490)
208 PRK11331 5-methylcytosine-spec 99.2 1.9E-10 4.1E-15 124.9 13.7 139 370-530 174-357 (459)
209 smart00382 AAA ATPases associa 99.2 2E-10 4.4E-15 104.4 11.9 122 401-531 3-147 (148)
210 COG3604 FhlA Transcriptional r 99.2 4.1E-10 8.8E-15 121.4 15.3 201 367-600 219-450 (550)
211 PRK09862 putative ATP-dependen 99.2 5.7E-10 1.2E-14 124.1 16.5 231 369-626 189-492 (506)
212 PTZ00111 DNA replication licen 99.1 2.1E-09 4.6E-14 124.9 20.6 219 402-630 494-808 (915)
213 TIGR02915 PEP_resp_reg putativ 99.1 1.2E-09 2.7E-14 121.3 17.6 199 369-600 137-366 (445)
214 KOG1514 Origin recognition com 99.1 2.7E-09 5.9E-14 118.9 18.6 221 373-630 398-659 (767)
215 PRK10923 glnG nitrogen regulat 99.1 1.5E-09 3.3E-14 121.4 15.2 216 369-620 136-382 (469)
216 PRK12377 putative replication 99.1 8.6E-10 1.9E-14 112.5 11.5 150 368-532 71-236 (248)
217 PF07726 AAA_3: ATPase family 99.1 2.2E-11 4.7E-16 110.2 -0.4 112 402-522 1-129 (131)
218 PRK08699 DNA polymerase III su 99.0 1.6E-09 3.5E-14 115.0 13.1 132 398-542 19-183 (325)
219 PRK11361 acetoacetate metaboli 99.0 1.3E-08 2.9E-13 113.3 20.7 211 369-620 141-387 (457)
220 PF00158 Sigma54_activat: Sigm 99.0 1.1E-09 2.4E-14 105.5 9.5 131 373-522 1-162 (168)
221 PRK15115 response regulator Gl 99.0 1.4E-08 3.1E-13 112.8 19.6 185 402-621 159-379 (444)
222 KOG0741 AAA+-type ATPase [Post 99.0 4.4E-09 9.6E-14 113.4 14.1 144 398-542 536-684 (744)
223 PRK07952 DNA replication prote 99.0 2.6E-09 5.7E-14 108.8 11.2 151 367-532 68-235 (244)
224 KOG0478 DNA replication licens 99.0 1.3E-08 2.9E-13 112.8 17.4 219 401-631 463-729 (804)
225 PRK05917 DNA polymerase III su 99.0 9E-09 1.9E-13 106.8 15.1 119 398-532 17-155 (290)
226 PF03215 Rad17: Rad17 cell cyc 99.0 3.4E-08 7.4E-13 110.7 20.5 211 364-607 12-269 (519)
227 smart00763 AAA_PrkA PrkA AAA d 99.0 1.6E-08 3.4E-13 107.5 16.5 62 370-433 49-118 (361)
228 PRK06835 DNA replication prote 99.0 2.6E-08 5.6E-13 105.9 18.1 120 401-532 184-318 (329)
229 PRK07132 DNA polymerase III su 99.0 2.9E-08 6.2E-13 104.1 17.9 127 399-542 17-160 (299)
230 COG1239 ChlI Mg-chelatase subu 98.9 5.5E-08 1.2E-12 103.8 19.5 240 369-633 15-329 (423)
231 COG1241 MCM2 Predicted ATPase 98.9 2E-08 4.2E-13 114.4 17.2 250 370-631 285-597 (682)
232 KOG0480 DNA replication licens 98.9 3.3E-08 7E-13 109.0 18.0 251 370-630 344-647 (764)
233 PRK13765 ATP-dependent proteas 98.9 2.3E-08 5.1E-13 114.4 17.8 138 460-625 227-399 (637)
234 TIGR01818 ntrC nitrogen regula 98.9 2.1E-08 4.5E-13 112.0 16.6 219 370-623 133-381 (463)
235 PRK05818 DNA polymerase III su 98.9 4.2E-08 9E-13 99.8 17.1 119 399-531 6-147 (261)
236 KOG2227 Pre-initiation complex 98.9 2.5E-08 5.4E-13 106.9 15.6 197 370-603 149-373 (529)
237 PF01637 Arch_ATPase: Archaeal 98.9 3.3E-08 7.1E-13 99.0 15.9 168 400-597 20-233 (234)
238 PRK07276 DNA polymerase III su 98.9 7.9E-08 1.7E-12 100.1 18.3 130 396-541 20-172 (290)
239 PRK08181 transposase; Validate 98.9 1.9E-09 4.2E-14 111.3 6.0 121 401-534 107-245 (269)
240 PRK13406 bchD magnesium chelat 98.8 2.6E-08 5.6E-13 113.2 14.0 202 400-634 25-258 (584)
241 PRK06526 transposase; Provisio 98.8 2.1E-09 4.6E-14 110.3 2.8 123 401-536 99-239 (254)
242 PRK08939 primosomal protein Dn 98.8 1.8E-08 3.8E-13 106.3 9.8 131 368-511 124-261 (306)
243 PF01695 IstB_IS21: IstB-like 98.8 1.7E-09 3.8E-14 105.1 1.3 110 401-523 48-172 (178)
244 PF12775 AAA_7: P-loop contain 98.8 9.6E-08 2.1E-12 99.1 14.1 138 402-548 35-197 (272)
245 PF14532 Sigma54_activ_2: Sigm 98.8 1.6E-08 3.5E-13 94.1 7.2 126 374-530 1-137 (138)
246 PRK10365 transcriptional regul 98.7 1.5E-07 3.2E-12 104.5 15.8 187 401-620 163-383 (441)
247 PRK06921 hypothetical protein; 98.7 5.5E-08 1.2E-12 100.7 11.5 125 400-532 117-255 (266)
248 PF13173 AAA_14: AAA domain 98.7 4.7E-08 1E-12 89.8 8.7 118 402-536 4-127 (128)
249 COG3283 TyrR Transcriptional r 98.7 2.8E-07 6E-12 95.8 15.1 203 365-604 198-430 (511)
250 COG1484 DnaC DNA replication p 98.7 6.4E-08 1.4E-12 99.4 9.9 96 370-471 78-179 (254)
251 PF00493 MCM: MCM2/3/5 family 98.7 1.3E-08 2.9E-13 108.6 4.7 245 370-628 23-328 (331)
252 KOG1970 Checkpoint RAD17-RFC c 98.7 1.3E-06 2.7E-11 95.6 19.5 212 364-606 75-320 (634)
253 KOG2170 ATPase of the AAA+ sup 98.7 4.4E-07 9.6E-12 92.6 14.3 166 371-547 82-303 (344)
254 PF12774 AAA_6: Hydrolytic ATP 98.7 5.8E-07 1.3E-11 91.0 15.2 146 371-540 10-176 (231)
255 COG3267 ExeA Type II secretory 98.6 1.3E-06 2.8E-11 87.7 16.7 188 402-620 53-267 (269)
256 PF12037 DUF3523: Domain of un 98.6 0.00011 2.3E-09 75.1 29.1 149 78-236 14-166 (276)
257 cd01120 RecA-like_NTPases RecA 98.5 1.1E-06 2.3E-11 82.8 12.4 107 403-511 2-137 (165)
258 TIGR02688 conserved hypothetic 98.5 5.9E-06 1.3E-10 89.3 19.1 198 401-636 210-443 (449)
259 PF05729 NACHT: NACHT domain 98.5 7.9E-07 1.7E-11 84.2 11.3 140 402-546 2-165 (166)
260 COG5271 MDN1 AAA ATPase contai 98.5 5.9E-07 1.3E-11 106.6 12.0 158 370-545 864-1048(4600)
261 PRK09183 transposase/IS protei 98.5 7.1E-08 1.5E-12 99.5 4.1 69 401-471 103-176 (259)
262 PF13401 AAA_22: AAA domain; P 98.5 3.8E-07 8.2E-12 83.3 8.4 95 401-509 5-124 (131)
263 COG5271 MDN1 AAA ATPase contai 98.4 4.3E-06 9.3E-11 99.6 16.3 134 401-546 1544-1705(4600)
264 PRK06581 DNA polymerase III su 98.4 8.2E-06 1.8E-10 81.8 14.9 129 401-545 16-162 (263)
265 PF00931 NB-ARC: NB-ARC domain 98.4 4E-06 8.8E-11 87.3 13.0 163 398-600 17-204 (287)
266 KOG1968 Replication factor C, 98.4 1E-06 2.2E-11 103.5 9.2 163 403-605 360-535 (871)
267 PHA00729 NTP-binding motif con 98.3 1.2E-06 2.5E-11 87.8 7.7 27 401-427 18-44 (226)
268 KOG0477 DNA replication licens 98.3 4.2E-06 9.1E-11 92.3 11.5 223 402-630 484-761 (854)
269 KOG0481 DNA replication licens 98.3 1.6E-05 3.4E-10 86.2 15.3 255 371-628 331-641 (729)
270 KOG0482 DNA replication licens 98.3 5E-06 1.1E-10 89.8 11.2 246 371-627 342-639 (721)
271 PF03969 AFG1_ATPase: AFG1-lik 98.3 2E-06 4.4E-11 92.6 8.2 103 396-511 58-168 (362)
272 COG1618 Predicted nucleotide k 98.3 1.3E-05 2.9E-10 75.1 12.3 24 401-424 6-29 (179)
273 COG3284 AcoR Transcriptional a 98.2 1.5E-05 3.3E-10 89.1 12.3 171 403-604 339-538 (606)
274 PHA02774 E1; Provisional 98.1 2E-05 4.3E-10 88.2 12.9 107 401-531 435-555 (613)
275 KOG2228 Origin recognition com 98.1 2.6E-05 5.7E-10 81.0 12.4 161 372-544 25-219 (408)
276 PF12780 AAA_8: P-loop contain 98.1 0.0001 2.3E-09 76.3 17.1 165 371-547 8-213 (268)
277 COG4650 RtcR Sigma54-dependent 98.1 6.3E-06 1.4E-10 83.7 7.7 131 403-543 211-371 (531)
278 PF00910 RNA_helicase: RNA hel 98.1 4.1E-06 8.8E-11 74.5 5.5 24 403-426 1-24 (107)
279 PF07693 KAP_NTPase: KAP famil 98.1 0.00027 5.8E-09 75.1 20.0 133 457-604 170-320 (325)
280 PF13191 AAA_16: AAA ATPase do 98.1 4.2E-06 9E-11 81.0 5.5 58 373-435 2-62 (185)
281 PF05707 Zot: Zonular occluden 98.1 5.7E-06 1.2E-10 81.6 6.0 122 403-531 3-146 (193)
282 cd01124 KaiC KaiC is a circadi 98.0 4.3E-05 9.4E-10 74.2 11.9 32 402-433 1-35 (187)
283 PRK04841 transcriptional regul 98.0 0.00012 2.5E-09 88.7 18.1 172 370-591 13-219 (903)
284 PLN03210 Resistant to P. syrin 98.0 0.00024 5.2E-09 88.2 21.0 150 369-544 182-364 (1153)
285 PRK12723 flagellar biosynthesi 98.0 3E-05 6.5E-10 84.2 11.1 177 400-599 174-379 (388)
286 TIGR01618 phage_P_loop phage n 98.0 2.7E-05 5.9E-10 78.0 9.4 104 401-506 13-140 (220)
287 PF06309 Torsin: Torsin; Inte 98.0 4.3E-05 9.4E-10 69.4 9.3 54 370-424 24-77 (127)
288 KOG2543 Origin recognition com 98.0 0.00012 2.6E-09 77.3 13.7 137 399-543 29-192 (438)
289 PHA02624 large T antigen; Prov 97.9 3.2E-05 7E-10 86.8 9.1 117 401-530 432-561 (647)
290 PF00448 SRP54: SRP54-type pro 97.9 0.00011 2.4E-09 72.6 11.9 101 400-510 1-125 (196)
291 PRK08118 topology modulation p 97.9 5.3E-05 1.2E-09 72.9 9.2 102 402-547 3-104 (167)
292 PF10236 DAP3: Mitochondrial r 97.9 0.0012 2.6E-08 70.0 20.2 130 447-598 142-309 (309)
293 KOG1051 Chaperone HSP104 and r 97.9 7.1E-05 1.5E-09 87.8 11.7 165 370-550 185-369 (898)
294 KOG0479 DNA replication licens 97.9 0.00042 9E-09 76.5 16.3 243 372-627 302-643 (818)
295 COG5245 DYN1 Dynein, heavy cha 97.9 0.00019 4.1E-09 85.8 14.5 197 401-613 1495-1723(3164)
296 PRK15455 PrkA family serine pr 97.8 5.6E-05 1.2E-09 84.6 8.9 62 369-433 74-137 (644)
297 PRK05800 cobU adenosylcobinami 97.8 0.00016 3.5E-09 69.9 10.8 103 402-510 3-125 (170)
298 PF13207 AAA_17: AAA domain; P 97.8 1.7E-05 3.7E-10 71.4 3.8 31 403-433 2-32 (121)
299 PRK14722 flhF flagellar biosyn 97.8 6.2E-05 1.3E-09 81.2 8.6 36 401-436 138-178 (374)
300 KOG3928 Mitochondrial ribosome 97.8 0.0011 2.4E-08 70.8 17.3 121 457-600 313-458 (461)
301 COG1373 Predicted ATPase (AAA+ 97.8 0.00023 5E-09 78.0 12.8 121 402-539 39-162 (398)
302 PF03266 NTPase_1: NTPase; In 97.8 1.9E-05 4.1E-10 76.1 3.6 23 402-424 1-23 (168)
303 PRK04296 thymidine kinase; Pro 97.8 0.00019 4.1E-09 70.6 10.7 69 403-471 5-90 (190)
304 PF14516 AAA_35: AAA-like doma 97.8 0.00069 1.5E-08 72.5 15.9 164 401-599 32-240 (331)
305 PRK10416 signal recognition pa 97.8 0.0016 3.5E-08 69.2 18.4 36 399-434 113-151 (318)
306 PRK14974 cell division protein 97.8 0.00053 1.2E-08 73.2 14.8 71 400-471 140-234 (336)
307 PRK07261 topology modulation p 97.7 0.00016 3.4E-09 70.0 9.4 102 402-546 2-103 (171)
308 PF13604 AAA_30: AAA domain; P 97.7 3.6E-05 7.8E-10 76.1 4.9 97 402-510 20-132 (196)
309 cd00544 CobU Adenosylcobinamid 97.7 0.00031 6.7E-09 67.8 10.9 105 403-511 2-126 (169)
310 cd00561 CobA_CobO_BtuR ATP:cor 97.7 0.00055 1.2E-08 65.2 12.0 116 402-529 4-153 (159)
311 COG1485 Predicted ATPase [Gene 97.7 0.00016 3.6E-09 76.0 8.9 100 397-510 62-170 (367)
312 PF04665 Pox_A32: Poxvirus A32 97.6 0.00092 2E-08 67.8 14.0 130 401-543 14-169 (241)
313 PRK00771 signal recognition pa 97.6 0.00057 1.2E-08 75.5 13.5 39 398-436 93-134 (437)
314 PF13479 AAA_24: AAA domain 97.6 0.00022 4.7E-09 71.5 9.4 103 401-507 4-135 (213)
315 KOG2383 Predicted ATPase [Gene 97.6 0.00017 3.6E-09 76.7 8.5 28 397-424 111-138 (467)
316 COG0552 FtsY Signal recognitio 97.6 0.00026 5.6E-09 74.1 9.8 71 400-471 139-233 (340)
317 PRK11889 flhF flagellar biosyn 97.6 0.00042 9.1E-09 74.8 11.5 72 400-471 241-332 (436)
318 PRK13695 putative NTPase; Prov 97.6 0.00083 1.8E-08 64.9 12.5 23 402-424 2-24 (174)
319 cd01121 Sms Sms (bacterial rad 97.6 0.00038 8.3E-09 75.5 11.1 73 401-474 83-173 (372)
320 PTZ00202 tuzin; Provisional 97.6 0.0036 7.9E-08 68.2 18.2 62 368-434 259-320 (550)
321 PTZ00121 MAEBL; Provisional 97.6 0.014 3E-07 70.2 24.1 18 522-539 1957-1974(2084)
322 PF05272 VirE: Virulence-assoc 97.6 0.00061 1.3E-08 67.5 11.0 104 401-530 53-169 (198)
323 TIGR03499 FlhF flagellar biosy 97.5 0.00028 6.1E-09 73.8 8.9 37 400-436 194-235 (282)
324 PRK00131 aroK shikimate kinase 97.5 8E-05 1.7E-09 71.3 4.5 32 400-431 4-35 (175)
325 PRK08233 hypothetical protein; 97.5 0.00037 8.1E-09 67.3 9.2 32 402-433 5-37 (182)
326 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00053 1.2E-08 68.7 10.4 107 401-514 30-157 (213)
327 TIGR00064 ftsY signal recognit 97.5 0.0011 2.3E-08 69.0 12.9 38 398-435 70-110 (272)
328 TIGR02237 recomb_radB DNA repa 97.5 0.00036 7.8E-09 69.4 9.0 35 401-435 13-50 (209)
329 PRK08485 DNA polymerase III su 97.5 0.0013 2.8E-08 64.4 12.4 86 445-542 40-137 (206)
330 COG4088 Predicted nucleotide k 97.5 0.00054 1.2E-08 66.9 9.6 24 402-425 3-26 (261)
331 PRK09361 radB DNA repair and r 97.5 0.0004 8.7E-09 69.9 9.1 33 402-434 25-60 (225)
332 PRK05973 replicative DNA helic 97.5 0.00075 1.6E-08 68.5 11.0 33 401-433 65-100 (237)
333 KOG3347 Predicted nucleotide k 97.5 8.3E-05 1.8E-09 68.8 3.6 32 401-432 8-39 (176)
334 PRK05703 flhF flagellar biosyn 97.5 0.00077 1.7E-08 74.5 11.9 103 401-511 222-343 (424)
335 PF04548 AIG1: AIG1 family; I 97.5 0.0023 4.9E-08 64.1 14.3 98 402-508 2-125 (212)
336 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0082 1.8E-07 67.4 19.9 141 450-630 70-212 (489)
337 cd00983 recA RecA is a bacter 97.5 0.00079 1.7E-08 71.4 11.1 78 397-474 51-148 (325)
338 PRK11823 DNA repair protein Ra 97.5 0.00076 1.7E-08 75.1 11.3 104 401-507 81-204 (446)
339 cd01128 rho_factor Transcripti 97.4 0.0014 3E-08 67.3 12.1 26 401-426 17-42 (249)
340 PRK14528 adenylate kinase; Pro 97.4 0.00091 2E-08 65.5 10.4 31 401-431 2-32 (186)
341 PRK04040 adenylate kinase; Pro 97.4 0.0006 1.3E-08 67.0 9.1 26 400-425 2-27 (188)
342 COG4619 ABC-type uncharacteriz 97.4 0.0011 2.3E-08 63.0 10.1 24 401-424 30-53 (223)
343 PRK10867 signal recognition pa 97.4 0.0022 4.7E-08 70.9 14.3 73 398-471 98-195 (433)
344 KOG1808 AAA ATPase containing 97.4 0.00021 4.5E-09 88.9 6.9 152 373-543 419-598 (1856)
345 PF06745 KaiC: KaiC; InterPro 97.4 0.00095 2E-08 67.3 10.6 123 401-530 20-185 (226)
346 PRK14531 adenylate kinase; Pro 97.4 0.0011 2.5E-08 64.6 10.6 30 402-431 4-33 (183)
347 PRK13947 shikimate kinase; Pro 97.4 0.00015 3.2E-09 69.6 4.3 32 401-432 2-33 (171)
348 COG0563 Adk Adenylate kinase a 97.4 0.00022 4.8E-09 69.4 5.4 32 402-435 2-33 (178)
349 PRK06762 hypothetical protein; 97.4 0.00065 1.4E-08 64.9 8.6 33 401-433 3-35 (166)
350 PRK00625 shikimate kinase; Pro 97.4 0.00015 3.2E-09 70.3 4.0 31 402-432 2-32 (173)
351 TIGR01425 SRP54_euk signal rec 97.4 0.002 4.3E-08 70.8 13.2 73 398-471 98-194 (429)
352 PRK12724 flagellar biosynthesi 97.4 0.0024 5.2E-08 69.7 13.6 102 401-510 224-344 (432)
353 TIGR02012 tigrfam_recA protein 97.4 0.00086 1.9E-08 71.1 9.9 78 397-474 51-148 (321)
354 cd03283 ABC_MutS-like MutS-lik 97.4 0.0012 2.6E-08 65.4 10.4 101 401-512 26-149 (199)
355 PRK10536 hypothetical protein; 97.4 0.0021 4.5E-08 65.8 12.1 22 402-423 76-97 (262)
356 COG3854 SpoIIIAA ncharacterize 97.4 0.00092 2E-08 66.4 9.1 73 399-471 136-230 (308)
357 PRK08533 flagellar accessory p 97.4 0.0025 5.4E-08 64.7 12.7 33 401-433 25-60 (230)
358 COG2909 MalT ATP-dependent tra 97.3 0.0041 8.8E-08 72.1 15.5 120 370-511 18-170 (894)
359 PRK05986 cob(I)alamin adenolsy 97.3 0.0028 6.1E-08 62.0 12.3 118 401-530 23-174 (191)
360 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0029 6.2E-08 59.9 12.3 111 401-529 26-154 (157)
361 PRK09376 rho transcription ter 97.3 0.0016 3.5E-08 70.2 11.5 24 402-425 171-194 (416)
362 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00084 1.8E-08 68.8 9.1 34 403-436 2-38 (249)
363 smart00534 MUTSac ATPase domai 97.3 0.0029 6.3E-08 61.9 12.4 101 403-511 2-122 (185)
364 cd02027 APSK Adenosine 5'-phos 97.3 0.00082 1.8E-08 63.4 8.2 33 403-435 2-37 (149)
365 PRK03839 putative kinase; Prov 97.3 0.00019 4.1E-09 69.7 3.9 31 402-432 2-32 (180)
366 PF10923 DUF2791: P-loop Domai 97.3 0.051 1.1E-06 59.5 22.9 126 460-607 240-398 (416)
367 cd00464 SK Shikimate kinase (S 97.3 0.00022 4.8E-09 66.9 4.1 31 402-432 1-31 (154)
368 PF13671 AAA_33: AAA domain; P 97.3 0.00027 5.8E-09 65.5 4.3 24 403-426 2-25 (143)
369 COG2804 PulE Type II secretory 97.3 0.0013 2.7E-08 72.7 10.1 90 367-470 234-338 (500)
370 COG1419 FlhF Flagellar GTP-bin 97.3 0.0021 4.6E-08 69.2 11.6 26 399-424 202-227 (407)
371 PRK14700 recombination factor 97.3 0.0033 7.1E-08 65.4 12.5 107 498-627 5-116 (300)
372 PRK13949 shikimate kinase; Pro 97.3 0.00025 5.3E-09 68.5 4.0 32 401-432 2-33 (169)
373 PRK14532 adenylate kinase; Pro 97.3 0.00024 5.2E-09 69.4 3.9 30 402-431 2-31 (188)
374 PF01745 IPT: Isopentenyl tran 97.2 0.0017 3.6E-08 64.2 9.6 131 402-549 3-144 (233)
375 TIGR02858 spore_III_AA stage I 97.2 0.0013 2.8E-08 68.2 9.4 26 400-425 111-136 (270)
376 PF00437 T2SE: Type II/IV secr 97.2 0.00046 9.9E-09 71.6 6.1 99 365-470 98-208 (270)
377 PRK06067 flagellar accessory p 97.2 0.0018 4E-08 65.6 10.4 33 401-433 26-61 (234)
378 cd00046 DEXDc DEAD-like helica 97.2 0.00095 2.1E-08 60.1 7.4 24 401-424 1-24 (144)
379 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00027 5.8E-09 68.6 4.0 28 403-430 2-29 (183)
380 PF08433 KTI12: Chromatin asso 97.2 0.0017 3.7E-08 67.4 10.1 83 403-495 4-96 (270)
381 cd03216 ABC_Carb_Monos_I This 97.2 0.0031 6.7E-08 60.3 11.2 100 401-511 27-142 (163)
382 PF05970 PIF1: PIF1-like helic 97.2 0.0011 2.3E-08 72.1 9.0 44 377-425 4-47 (364)
383 cd03115 SRP The signal recogni 97.2 0.0048 1E-07 59.4 12.6 34 403-436 3-39 (173)
384 PF09848 DUF2075: Uncharacteri 97.2 0.0012 2.6E-08 71.3 8.9 23 402-424 3-25 (352)
385 TIGR00708 cobA cob(I)alamin ad 97.2 0.0056 1.2E-07 59.1 12.5 117 402-530 7-156 (173)
386 PRK13948 shikimate kinase; Pro 97.2 0.0004 8.7E-09 67.8 4.6 34 399-432 9-42 (182)
387 PRK12727 flagellar biosynthesi 97.2 0.0018 3.8E-08 72.5 10.1 68 401-471 351-440 (559)
388 PRK14527 adenylate kinase; Pro 97.2 0.0019 4.1E-08 63.4 9.2 31 401-431 7-37 (191)
389 PRK08154 anaerobic benzoate ca 97.2 0.00071 1.5E-08 71.8 6.6 57 376-432 109-165 (309)
390 COG0529 CysC Adenylylsulfate k 97.2 0.0011 2.5E-08 63.3 7.1 38 399-436 22-62 (197)
391 cd01131 PilT Pilus retraction 97.2 0.00087 1.9E-08 66.4 6.7 66 402-469 3-84 (198)
392 PF13337 Lon_2: Putative ATP-d 97.1 0.0038 8.2E-08 68.3 12.0 195 401-636 209-441 (457)
393 cd00227 CPT Chloramphenicol (C 97.1 0.00033 7.2E-09 67.8 3.6 33 401-433 3-35 (175)
394 PF01926 MMR_HSR1: 50S ribosom 97.1 0.0029 6.3E-08 56.5 9.4 21 403-423 2-22 (116)
395 PRK00279 adk adenylate kinase; 97.1 0.0037 8E-08 62.6 11.2 29 403-431 3-31 (215)
396 COG0703 AroK Shikimate kinase 97.1 0.00034 7.5E-09 67.0 3.5 32 401-432 3-34 (172)
397 smart00487 DEXDc DEAD-like hel 97.1 0.00094 2E-08 64.1 6.6 24 401-424 25-49 (201)
398 TIGR00959 ffh signal recogniti 97.1 0.0073 1.6E-07 66.7 14.2 72 399-471 98-194 (428)
399 PRK06217 hypothetical protein; 97.1 0.00045 9.7E-09 67.4 4.3 31 402-432 3-33 (183)
400 PRK14530 adenylate kinase; Pro 97.1 0.00042 9E-09 69.5 4.1 30 402-431 5-34 (215)
401 PRK03846 adenylylsulfate kinas 97.1 0.0038 8.2E-08 61.7 10.9 37 399-435 23-62 (198)
402 PHA00350 putative assembly pro 97.1 0.0011 2.4E-08 71.9 7.6 116 403-524 4-158 (399)
403 PF04851 ResIII: Type III rest 97.1 0.0047 1E-07 59.1 11.3 51 377-431 6-56 (184)
404 cd01428 ADK Adenylate kinase ( 97.1 0.00041 9E-09 67.8 4.0 29 403-431 2-30 (194)
405 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.004 8.8E-08 61.6 11.1 21 401-421 29-49 (200)
406 cd02020 CMPK Cytidine monophos 97.1 0.00044 9.6E-09 64.2 3.9 30 403-432 2-31 (147)
407 cd01853 Toc34_like Toc34-like 97.1 0.0062 1.3E-07 62.5 12.6 25 399-423 30-54 (249)
408 PLN02674 adenylate kinase 97.1 0.0044 9.5E-08 63.3 11.3 32 399-430 30-61 (244)
409 PRK13808 adenylate kinase; Pro 97.1 0.0027 5.8E-08 67.5 10.0 30 402-431 2-31 (333)
410 COG1102 Cmk Cytidylate kinase 97.1 0.00045 9.7E-09 65.1 3.6 28 403-430 3-30 (179)
411 cd00984 DnaB_C DnaB helicase C 97.1 0.0042 9.1E-08 63.1 11.2 33 401-433 14-50 (242)
412 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0035 7.5E-08 61.0 10.0 98 401-510 26-131 (177)
413 COG1936 Predicted nucleotide k 97.1 0.00039 8.5E-09 66.2 3.2 30 402-432 2-31 (180)
414 TIGR01420 pilT_fam pilus retra 97.1 0.0017 3.7E-08 69.9 8.5 67 401-469 123-205 (343)
415 cd03247 ABCC_cytochrome_bd The 97.1 0.0069 1.5E-07 58.7 12.0 24 401-424 29-52 (178)
416 COG1116 TauB ABC-type nitrate/ 97.1 0.0029 6.3E-08 63.9 9.4 22 403-424 32-53 (248)
417 PRK09354 recA recombinase A; P 97.1 0.0034 7.3E-08 67.2 10.4 77 397-473 56-152 (349)
418 PTZ00121 MAEBL; Provisional 97.1 0.13 2.7E-06 62.4 23.8 12 615-626 2044-2055(2084)
419 cd01130 VirB11-like_ATPase Typ 97.0 0.0011 2.4E-08 64.9 6.3 69 401-470 26-111 (186)
420 cd02022 DPCK Dephospho-coenzym 97.0 0.00093 2E-08 65.0 5.7 28 403-431 2-29 (179)
421 cd02021 GntK Gluconate kinase 97.0 0.00052 1.1E-08 64.4 3.8 27 403-429 2-28 (150)
422 cd03246 ABCC_Protease_Secretio 97.0 0.012 2.5E-07 56.8 13.3 24 401-424 29-52 (173)
423 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0024 5.2E-08 59.8 8.2 95 401-511 27-127 (144)
424 cd03243 ABC_MutS_homologs The 97.0 0.0053 1.2E-07 60.8 11.2 21 401-421 30-50 (202)
425 cd01393 recA_like RecA is a b 97.0 0.0025 5.4E-08 64.0 8.9 35 401-435 20-63 (226)
426 PRK14723 flhF flagellar biosyn 97.0 0.003 6.6E-08 73.7 10.6 24 401-424 186-209 (767)
427 cd03238 ABC_UvrA The excision 97.0 0.011 2.5E-07 57.3 13.1 22 401-422 22-43 (176)
428 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0024 5.1E-08 66.2 8.7 92 369-470 58-160 (264)
429 TIGR01313 therm_gnt_kin carboh 97.0 0.00051 1.1E-08 65.4 3.5 32 403-436 1-32 (163)
430 TIGR02782 TrbB_P P-type conjug 97.0 0.0012 2.7E-08 69.6 6.7 69 401-470 133-215 (299)
431 TIGR00152 dephospho-CoA kinase 97.0 0.0017 3.8E-08 63.5 7.3 29 403-431 2-30 (188)
432 cd03228 ABCC_MRP_Like The MRP 97.0 0.013 2.9E-07 56.3 13.3 24 401-424 29-52 (171)
433 cd03227 ABC_Class2 ABC-type Cl 97.0 0.0052 1.1E-07 58.7 10.4 23 401-423 22-44 (162)
434 PRK13764 ATPase; Provisional 97.0 0.0013 2.7E-08 75.2 7.0 25 401-425 258-282 (602)
435 COG2874 FlaH Predicted ATPases 97.0 0.0051 1.1E-07 60.7 10.2 115 397-522 24-178 (235)
436 PLN02200 adenylate kinase fami 97.0 0.00073 1.6E-08 68.7 4.6 36 399-436 42-77 (234)
437 PRK13900 type IV secretion sys 97.0 0.0021 4.6E-08 68.7 8.2 69 401-470 161-246 (332)
438 PRK14730 coaE dephospho-CoA ki 97.0 0.0027 5.9E-08 62.7 8.3 29 402-430 3-31 (195)
439 cd01878 HflX HflX subfamily. 97.0 0.018 3.9E-07 56.7 14.3 25 399-423 40-64 (204)
440 COG1136 SalX ABC-type antimicr 97.0 0.0093 2E-07 60.0 12.2 58 459-530 160-217 (226)
441 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0046 1E-07 62.9 10.3 32 401-432 22-56 (237)
442 PRK13946 shikimate kinase; Pro 97.0 0.00068 1.5E-08 66.2 4.0 32 401-432 11-42 (184)
443 PRK10263 DNA translocase FtsK; 97.0 0.0068 1.5E-07 73.6 13.1 113 461-587 1142-1260(1355)
444 PRK06547 hypothetical protein; 97.0 0.00076 1.6E-08 65.3 4.3 35 398-432 13-47 (172)
445 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0052 1.1E-07 62.1 10.6 35 401-435 20-63 (235)
446 PF13245 AAA_19: Part of AAA d 97.0 0.0012 2.5E-08 55.0 4.7 22 403-424 13-35 (76)
447 PF00519 PPV_E1_C: Papillomavi 97.0 0.0021 4.7E-08 68.6 7.7 103 401-531 263-383 (432)
448 PRK03731 aroL shikimate kinase 96.9 0.00082 1.8E-08 64.6 4.3 31 402-432 4-34 (171)
449 PRK12726 flagellar biosynthesi 96.9 0.0079 1.7E-07 64.9 12.0 38 399-436 205-245 (407)
450 TIGR00767 rho transcription te 96.9 0.0048 1E-07 66.9 10.4 25 401-425 169-193 (415)
451 TIGR02653 Lon_rel_chp conserve 96.9 0.0043 9.2E-08 70.6 10.4 193 401-635 217-449 (675)
452 PTZ00088 adenylate kinase 1; P 96.9 0.00079 1.7E-08 68.2 4.2 31 402-432 8-38 (229)
453 PF08303 tRNA_lig_kinase: tRNA 96.9 0.019 4.2E-07 54.6 13.1 130 405-548 4-147 (168)
454 cd03287 ABC_MSH3_euk MutS3 hom 96.9 0.0084 1.8E-07 60.5 11.6 22 401-422 32-53 (222)
455 PRK06696 uridine kinase; Valid 96.9 0.0018 3.9E-08 65.3 6.7 38 400-437 22-62 (223)
456 cd01122 GP4d_helicase GP4d_hel 96.9 0.0052 1.1E-07 63.6 10.4 33 401-433 31-67 (271)
457 PRK05057 aroK shikimate kinase 96.9 0.00089 1.9E-08 64.8 4.3 33 401-433 5-37 (172)
458 cd03213 ABCG_EPDR ABCG transpo 96.9 0.013 2.9E-07 57.6 12.6 24 401-424 36-59 (194)
459 PHA02530 pseT polynucleotide k 96.9 0.0047 1E-07 64.9 10.0 32 401-433 3-34 (300)
460 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0063 1.4E-07 60.6 10.3 22 401-422 30-51 (204)
461 TIGR01360 aden_kin_iso1 adenyl 96.9 0.0009 2E-08 65.0 4.1 29 402-430 5-33 (188)
462 PRK13833 conjugal transfer pro 96.9 0.0014 2.9E-08 69.7 5.7 69 401-470 145-226 (323)
463 PRK02496 adk adenylate kinase; 96.9 0.00084 1.8E-08 65.4 3.8 30 402-431 3-32 (184)
464 TIGR02788 VirB11 P-type DNA tr 96.9 0.0045 9.7E-08 65.7 9.5 69 401-470 145-229 (308)
465 TIGR02524 dot_icm_DotB Dot/Icm 96.9 0.0049 1.1E-07 66.6 9.8 24 401-424 135-158 (358)
466 cd01852 AIG1 AIG1 (avrRpt2-ind 96.9 0.0075 1.6E-07 59.3 10.4 22 402-423 2-23 (196)
467 TIGR01128 holA DNA polymerase 96.9 0.039 8.5E-07 57.8 16.5 128 459-626 46-178 (302)
468 PF01443 Viral_helicase1: Vira 96.9 0.0013 2.9E-08 66.2 5.1 22 403-424 1-22 (234)
469 PF01583 APS_kinase: Adenylyls 96.9 0.0021 4.6E-08 61.0 6.1 37 401-437 3-42 (156)
470 TIGR01351 adk adenylate kinase 96.8 0.00096 2.1E-08 66.6 4.0 29 403-431 2-30 (210)
471 PF13481 AAA_25: AAA domain; P 96.8 0.005 1.1E-07 60.1 8.9 23 402-424 34-56 (193)
472 TIGR02768 TraA_Ti Ti-type conj 96.8 0.0032 7E-08 74.5 8.9 69 402-471 370-451 (744)
473 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.8 0.0039 8.5E-08 61.8 8.1 33 402-434 40-79 (205)
474 PRK12608 transcription termina 96.8 0.0083 1.8E-07 64.6 10.9 24 402-425 135-158 (380)
475 PRK13894 conjugal transfer ATP 96.8 0.0063 1.4E-07 64.7 10.0 69 401-470 149-230 (319)
476 PF10443 RNA12: RNA12 protein; 96.8 0.064 1.4E-06 58.5 17.6 36 512-547 197-232 (431)
477 PF02562 PhoH: PhoH-like prote 96.8 0.0017 3.8E-08 64.4 5.2 23 402-424 21-43 (205)
478 cd03239 ABC_SMC_head The struc 96.8 0.037 8.1E-07 53.8 14.5 23 402-424 24-46 (178)
479 cd03233 ABC_PDR_domain1 The pl 96.8 0.013 2.9E-07 58.0 11.6 24 401-424 34-57 (202)
480 TIGR00416 sms DNA repair prote 96.8 0.0052 1.1E-07 68.6 9.5 72 401-473 95-184 (454)
481 PRK13851 type IV secretion sys 96.8 0.0017 3.7E-08 69.6 5.5 69 401-470 163-247 (344)
482 cd03232 ABC_PDR_domain2 The pl 96.8 0.025 5.5E-07 55.5 13.4 23 401-423 34-56 (192)
483 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.011 2.3E-07 59.6 11.0 34 401-434 17-53 (224)
484 cd02019 NK Nucleoside/nucleoti 96.8 0.0019 4E-08 52.6 4.4 30 403-432 2-32 (69)
485 PRK06995 flhF flagellar biosyn 96.8 0.013 2.7E-07 65.6 12.4 35 401-435 257-296 (484)
486 PF13238 AAA_18: AAA domain; P 96.8 0.00099 2.2E-08 60.1 3.1 22 403-424 1-22 (129)
487 PRK00081 coaE dephospho-CoA ki 96.8 0.0028 6E-08 62.6 6.4 29 402-431 4-32 (194)
488 cd03223 ABCD_peroxisomal_ALDP 96.8 0.036 7.8E-07 53.1 14.0 24 401-424 28-51 (166)
489 COG1125 OpuBA ABC-type proline 96.7 0.0072 1.6E-07 61.2 9.2 22 403-424 30-51 (309)
490 cd01394 radB RadB. The archaea 96.7 0.01 2.3E-07 59.3 10.6 34 401-434 20-56 (218)
491 TIGR01069 mutS2 MutS2 family p 96.7 0.026 5.6E-07 67.0 15.4 23 401-423 323-345 (771)
492 COG1066 Sms Predicted ATP-depe 96.7 0.015 3.2E-07 62.6 12.0 107 399-506 92-217 (456)
493 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0054 1.2E-07 63.4 8.6 34 401-434 37-73 (259)
494 COG3839 MalK ABC-type sugar tr 96.7 0.0054 1.2E-07 65.3 8.7 22 403-424 32-53 (338)
495 cd03230 ABC_DR_subfamily_A Thi 96.7 0.017 3.8E-07 55.6 11.7 24 401-424 27-50 (173)
496 cd01125 repA Hexameric Replica 96.7 0.028 6E-07 57.2 13.7 21 403-423 4-24 (239)
497 COG2274 SunT ABC-type bacterio 96.7 0.014 2.9E-07 68.5 12.8 24 401-424 500-523 (709)
498 PRK06731 flhF flagellar biosyn 96.7 0.0075 1.6E-07 62.6 9.6 73 399-471 74-166 (270)
499 TIGR00991 3a0901s02IAP34 GTP-b 96.7 0.021 4.5E-07 60.2 12.7 43 378-423 19-61 (313)
500 PHA00012 I assembly protein 96.7 0.0074 1.6E-07 63.3 9.3 58 458-520 80-137 (361)
No 1
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-131 Score=1007.13 Aligned_cols=625 Identities=66% Similarity=0.950 Sum_probs=573.3
Q ss_pred ChhhhhhHHHHHHHHHhhhhhhcCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCcc-ccCCCCcCCCCCccccCC
Q 006458 1 MGKAYAIGLISSALAAASASACSQPNTAFADGPLNFSPFSFGTSSQSGQSQPSDLPQPPAA-AAGDKSASAPAPARVRND 79 (644)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (644)
|++.++++++++++ ++...+.+.+|+||+|.|++||.++ ++|.||..++ +.+... .....| -+
T Consensus 1 Ma~kc~a~~i~a~~----~S~~~~~nka~ad~~f~~~~fs~sp--------~~~~pp~~~~~~~s~~~---~~~~~p-~~ 64 (630)
T KOG0742|consen 1 MAQKCAAGSISALA----MSWLFGINKAYADSRFGFPGFSASP--------PPPLPPAQPGAPGSGDR---GEGDRP-DP 64 (630)
T ss_pred CchhHHHHHHHHHH----HHHHhccchhhccCCCCCCCCCCCC--------CCCCCCCCCCCCCCCcc---cccCCC-CC
Confidence 66664444444333 3556667779999999999995554 2211111111 111111 111112 26
Q ss_pred CCCCccCCCCCchhhHHHHHHHHHhcCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006458 80 QPRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQAENERQRVIYDEQRKLAQH 159 (644)
Q Consensus 80 ~~~~~~~~~d~~~ler~a~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~~~~ 159 (644)
+|++.|++|||++|||||||||+||+|||||++|+++++||+|+|+|++++.++|+++++|+++|++|+.+||+||++++
T Consensus 65 ~Pk~~~~gFDpeaLERaAKAlrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~ 144 (630)
T KOG0742|consen 65 APKDSWSGFDPEALERAAKALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQE 144 (630)
T ss_pred CccccccCCChHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006458 160 NAQTKSQMARYEDELARKRMQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAM 239 (644)
Q Consensus 160 ~~~~~~~~~~y~d~l~r~~~~~e~e~~~~~~~~~~~~~~e~~~r~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (644)
|+++++++++|+|+|+|+||+.+++.|+++|++++++||+|+.|+|++|++|+|+|++++++++.+++++++++.+.+++
T Consensus 145 qaq~k~q~arYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~ 224 (630)
T KOG0742|consen 145 ETQQKQQRARYQDKLARKRYEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAK 224 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHhhhhhhhhchhhhhhcchhhHHHHHhhhhhhhhhhccccCchhH
Q 006458 240 AEAEGRAHEAKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKV 319 (644)
Q Consensus 240 ~e~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~~~~~~gv~t~~~~~~v 319 (644)
+++++++++.+.|+|+++++++.+++++|++|++.|+|+|++||+|++.+++|++++..+|||+|++++||||+++++.|
T Consensus 225 Aeaegraheakl~edvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~Kli~tVgGlTaLAaGvYTtkeg~~V 304 (630)
T KOG0742|consen 225 AEAEGRAHEAKLNEDVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNKLIATVGGLTALAAGVYTTKEGTLV 304 (630)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHhHHHHhhhHHHHHhhheeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHhhchhccCCC
Q 006458 320 IWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAP 399 (644)
Q Consensus 320 ~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p 399 (644)
+|+||++++|+||||||+||..+||...+......+.. .........+.|++||++|.+..+|+++.....|++.+..|
T Consensus 305 ~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~-~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~ap 383 (630)
T KOG0742|consen 305 TWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG-SRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAP 383 (630)
T ss_pred HHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh-hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccch
Confidence 99999999999999999999999999888777666654 23334566777999999999999999999999999999999
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
++|||||||||||||++|+.||.+.|++|..|+|+++.++|.+.++.++++|+|+++++++.+|||||+|.|++.|+...
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty 463 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY 463 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCC-CCc
Q 006458 480 MSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRK-PGL 558 (644)
Q Consensus 480 ~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~-~~~ 558 (644)
+++..+..||.||+.+++.+.++++|++||+|.+||+++.+|||.+|+||+|+.++|.+||..||++|+..++..+ +..
T Consensus 464 mSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~ 543 (630)
T KOG0742|consen 464 MSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGK 543 (630)
T ss_pred hcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877766 577
Q ss_pred chhhhhhhhhhhhccC-CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHHHHHHhh
Q 006458 559 VHRLFKSEQQKIEIKG-LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKLA 637 (644)
Q Consensus 559 ~~~~~~~~~~~~~~~~-~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~~~~~~ 637 (644)
|+.+|++..+++.+.. .++..|.+.|.+|+|||||+|.+|+.+||+++|++.+|+||..+|++.+++++.+|++|+.+.
T Consensus 544 ~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr~~La 623 (630)
T KOG0742|consen 544 WSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQRMWLA 623 (630)
T ss_pred hhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999865 778899999999999999999999999999999999999999999999999999999999666
Q ss_pred hcCCC
Q 006458 638 AAGGG 642 (644)
Q Consensus 638 ~~~~~ 642 (644)
..+.+
T Consensus 624 ~e~~~ 628 (630)
T KOG0742|consen 624 AEGSG 628 (630)
T ss_pred hcccc
Confidence 65544
No 2
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=100.00 E-value=1.8e-66 Score=518.72 Aligned_cols=261 Identities=63% Similarity=0.854 Sum_probs=258.6
Q ss_pred cccCCCCCCccCCCCCchhhHHHHHHHHHhcCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006458 75 RVRNDQPRTTSAGFDPEPLERGAKLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQAENERQRVIYDEQR 154 (644)
Q Consensus 75 ~~~~~~~~~~~~~~d~~~ler~a~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r 154 (644)
.+++++|++++++|||++|||||||||+|++|||||+||+|+++||+|+|+|+++++++|+++++|+++++.|+++||+|
T Consensus 16 ~~~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~QE~TkQ~E~~ak~~e~ea~~~q~~~e~~rv~~EE~R 95 (276)
T PF12037_consen 16 KPRNDNPRTTASGFDPEALERAAKALRELNSSPHAKKAFELMKKQEETKQAELQAKIAEYEAAQAQAEIERQRVEAEERR 95 (276)
T ss_pred CCCCCCCCcccCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006458 155 KLAQHNAQTKSQMARYEDELARKRMQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETI 234 (644)
Q Consensus 155 ~~~~~~~~~~~~~~~y~d~l~r~~~~~e~e~~~~~~~~~~~~~~e~~~r~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (644)
|++++++++++++++|+|+|+|+||+++++.|+.+|++++++|++|+.|||++|+.|+++|+++++++.+++++|+++++
T Consensus 96 kt~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~ 175 (276)
T PF12037_consen 96 KTLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETE 175 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHhhhhhhhhchhhhhhcchhhHHHHHhhhhhhhhhhcccc
Q 006458 235 RVRAMAEAEGRAHEAKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTR 314 (644)
Q Consensus 235 ~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~~~~~~gv~t~~ 314 (644)
+.+++++++++|+.+|+|.|+++++++.++.++|.+|+++|+++|+++|+||..|++|++++..+|+++|++++||||++
T Consensus 176 ~~k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYtar 255 (276)
T PF12037_consen 176 RAKAEAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYTAR 255 (276)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCCccc
Q 006458 315 EGAKVIWGYVDRILGQPSLIR 335 (644)
Q Consensus 315 ~~~~v~~~~i~~~~gkpslvr 335 (644)
+++.|+|+||+.+||||||||
T Consensus 256 ~gt~v~~~yie~rLGkPsLVR 276 (276)
T PF12037_consen 256 EGTRVAGRYIEARLGKPSLVR 276 (276)
T ss_pred HHHHHHHHHHHHHcCCCccCC
Confidence 999999999999999999997
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=309.52 Aligned_cols=241 Identities=27% Similarity=0.380 Sum_probs=206.0
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHH-hhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC
Q 006458 363 ASKNGNGFGDVILHPSLQKRIRQLSGA-TANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437 (644)
Q Consensus 363 ~~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~ 437 (644)
...|..+|++|-|.++.++.|+..+.. +.++ ..+-.||++||||||||||||+||+++|++.+..|+.+.|+++.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 357888999999998888888775432 2222 23447999999999999999999999999999999999999987
Q ss_pred C-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCC
Q 006458 438 P-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPG 512 (644)
Q Consensus 438 ~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~ 512 (644)
. |.+++...++++|..|+... ||||||||||.++.+|.+. +.....+.++..||..++ +...|+-||++||+++
T Consensus 223 qKYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 6 77788899999999999876 8999999999999988655 344567888888888887 5678999999999999
Q ss_pred CCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 513 DLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 513 ~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
.|||+|++ |||+.|+||+|+.+.|..||+.+..+... -++.+++.||+.|+||
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-------------------------~~dvd~e~la~~~~g~ 356 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-------------------------ADDVDLELLARLTEGF 356 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-------------------------ccCcCHHHHHHhcCCC
Confidence 99999998 99999999999999999999999987542 2446899999999999
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 591 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 591 SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
||+||..+|.-+-..+.......+|.+||.++++..+..
T Consensus 357 sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 357 SGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred chHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhc
Confidence 999999999655555555566899999999999987653
No 4
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.1e-34 Score=280.19 Aligned_cols=234 Identities=30% Similarity=0.473 Sum_probs=201.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccC-CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cchh
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHN-APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQ 442 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~-~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~~ 442 (644)
.+..+|++|||+++++...+-+...+.++...+ ..|+|||||||||||||++|++||++...|++.++...+.+ ..++
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 455689999999999999999999999988765 46799999999999999999999999999999999888754 7778
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCHHHhc
Q 006458 443 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVAD 520 (644)
Q Consensus 443 ~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~al~~ 520 (644)
+...++++++.|.... |||+||||+|.+.-+|.-.....+...++|.||..++ ..+.+++.|++||+|+.||+++++
T Consensus 195 gar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs 273 (368)
T COG1223 195 GARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS 273 (368)
T ss_pred HHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh
Confidence 8999999999999887 8999999999998777665555677889999999997 456689999999999999999999
Q ss_pred ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHH-
Q 006458 521 RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM- 599 (644)
Q Consensus 521 Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~- 599 (644)
||...|+|.+|+.++|..|++.|++++... + +..++.++.+|.|||||||..=+
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Plp------------------------v-~~~~~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPLP------------------------V-DADLRYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCCc------------------------c-ccCHHHHHHHhCCCCchhHHHHHH
Confidence 999999999999999999999999886543 1 23489999999999999998644
Q ss_pred -HHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 600 -ASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 600 -~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
.+++.+. ..+...++.+|+..++..
T Consensus 329 K~aLh~Ai-~ed~e~v~~edie~al~k 354 (368)
T COG1223 329 KTALHRAI-AEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHHHHH-HhchhhhhHHHHHHHHHh
Confidence 3444333 234478999999999876
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-34 Score=309.43 Aligned_cols=240 Identities=27% Similarity=0.386 Sum_probs=204.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-h----chhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGAT-A----NTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~----~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
.-+..+|++|-|.++++..|++.+.+. . ..+.+-.|+++||||||||||||++|++||++.+.+|+.+.|.++..
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 345667999999999999998755432 2 22333379999999999999999999999999999999999999865
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld 515 (644)
|.++++..++.+|+.|+... ||||||||||.+...|+++. +.....+|+.||.+++ ...++|+||++||+|+.||
T Consensus 507 k~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID 584 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMID 584 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcC
Confidence 88899999999999999877 69999999999999997544 4678899999999997 4667999999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
++++| |||.+||+|+|+.+.|..||+.++++.... .+.+++.||..|+||||+
T Consensus 585 ~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-------------------------~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 585 PALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-------------------------EDVDLEELAQATEGYSGA 639 (693)
T ss_pred HHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-------------------------ccccHHHHHHHhccCChH
Confidence 99999 999999999999999999999999875421 234899999999999999
Q ss_pred HHHHHHHHH--HHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 594 EIAKLMASV--QAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 594 dI~~L~~~~--~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
||..+|+.+ .+....-+...|+.+||.+++.......
T Consensus 640 el~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 999999533 3333344557899999999998876543
No 6
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-34 Score=302.08 Aligned_cols=241 Identities=28% Similarity=0.399 Sum_probs=208.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~ 441 (644)
..+|+||.|.++++..+..++.+++++ ..+|.-|++|||+||||||||+||+++|.+.+.||+++.|++|.. +.+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 346999999999999999998888765 356677899999999999999999999999999999999999977 556
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCCHHHh
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDSAVA 519 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld~al~ 519 (644)
.+...++.+|..|+.+. ||||||||+|.+..+|+..... ..+..+|.||-+++. .+..+|||++||.|+.||++|.
T Consensus 380 vGArRVRdLF~aAk~~A-PcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARA-PCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred ccHHHHHHHHHHHHhcC-CeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhc
Confidence 67889999999999877 8999999999999999877654 788999999999984 5567999999999999999999
Q ss_pred c--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHH
Q 006458 520 D--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 597 (644)
Q Consensus 520 ~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~ 597 (644)
+ |||..|.+|.||..-|.+||..|+.+.... .+.++.-||+-|.||||.||++
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-------------------------~~VD~~iiARGT~GFsGAdLaN 512 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-------------------------EDVDPKIIARGTPGFSGADLAN 512 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCcc-------------------------cCCCHhHhccCCCCCchHHHHH
Confidence 8 999999999999999999999999875321 2446788999999999999999
Q ss_pred HHH--HHHHHHhCCCCCccCHHHHHHHHHHHHHhHHHHHHh
Q 006458 598 LMA--SVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKL 636 (644)
Q Consensus 598 L~~--~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~~~~~ 636 (644)
|++ ++.++..+. ..+|+.+++.+-+..+-+..+|..+
T Consensus 513 lVNqAAlkAa~dga--~~VtM~~LE~akDrIlMG~ERks~~ 551 (752)
T KOG0734|consen 513 LVNQAALKAAVDGA--EMVTMKHLEFAKDRILMGPERKSMV 551 (752)
T ss_pred HHHHHHHHHHhcCc--ccccHHHHhhhhhheeecccccccc
Confidence 995 445555444 7899999999988877666555444
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-32 Score=279.55 Aligned_cols=242 Identities=24% Similarity=0.340 Sum_probs=202.0
Q ss_pred hhhhccCCCCCCccccChHHHHHHHHHH-HHhhc---hhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC
Q 006458 360 KELASKNGNGFGDVILHPSLQKRIRQLS-GATAN---TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 435 (644)
Q Consensus 360 ~~l~~~~~~~~~~vig~~~~~~~l~~l~-~~~~~---~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~ 435 (644)
..+...+...|+||.|..++++.|+..+ ..+.. .+....|+++||++||||||||+||+++|.++|..|+.|+.+.
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 3455677889999999999999997633 33322 2344579999999999999999999999999999999999999
Q ss_pred CCC-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC---CCC--C-EEEEEEe
Q 006458 436 VAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---QSK--D-IVLALAT 508 (644)
Q Consensus 436 l~~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~---~~~--~-viiI~tt 508 (644)
+.. +-++++..++-+|+.|+.+. |++|||||||.|+..|++...++..+.+-+.||..++. ... + |+|+++|
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyA-PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhC-CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 876 88899999999999999888 89999999999999999998899999999999988862 122 2 6666689
Q ss_pred CCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006458 509 NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 588 (644)
Q Consensus 509 N~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~ 588 (644)
|.||+||.+|++||...|++|+|+.+.|..+|+..+..... .++..++.|+..++
T Consensus 360 N~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-------------------------~~~~~~~~lae~~e 414 (491)
T KOG0738|consen 360 NFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-------------------------DDPVNLEDLAERSE 414 (491)
T ss_pred CCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-------------------------CCCccHHHHHHHhc
Confidence 99999999999999999999999999999999999876431 35568999999999
Q ss_pred CCcHHHHHHHHH--HHHHHHhC---------------CCCCccCHHHHHHHHHHHH
Q 006458 589 GFSGREIAKLMA--SVQAAVYG---------------SENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 589 G~SgrdI~~L~~--~~~aa~~~---------------~~~~~lt~~~~~~al~~~~ 627 (644)
||||.||.++|+ ++++.... ....+++..+|+.++....
T Consensus 415 GySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 415 GYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 999999999994 44433311 1125689999999988764
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=288.34 Aligned_cols=240 Identities=24% Similarity=0.366 Sum_probs=198.8
Q ss_pred cCCCCCCccccChHHHHHHHH-HHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQ-LSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~-l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.|..+|+||-+..+++..+.. ++...+.+. .+-.+|.+||||||||||||++|+++|++.|.+|+.+.|.++..
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 577899999999999999966 444444332 23357789999999999999999999999999999999999876
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCH
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~ 516 (644)
|.++++..++.+|..|+.+. ||||||||+|.|.+.|+... +.....++|.||.+++ ....+|.||++||+|+.+||
T Consensus 585 YVGESErAVR~vFqRAR~sa-PCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDp 662 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASA-PCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDP 662 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCC-CeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccceEEEeecCCCcccch
Confidence 88899999999999999887 89999999999999998877 5677889999999997 46778999999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC--CCcH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSG 592 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~--G~Sg 592 (644)
++++ |||..+++++|+.++|..||+...+.... ..-+|.+++.||+.+. ||||
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~-----------------------pl~~dVdl~eia~~~~c~gftG 719 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKNTKP-----------------------PLSSDVDLDEIARNTKCEGFTG 719 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhccCCC-----------------------CCCcccCHHHHhhcccccCCch
Confidence 9998 99999999999999999999999864211 1235568999999876 9999
Q ss_pred HHHHHHHH--HHHHH---HhCC-----------CCCccCHHHHHHHHHHHHHh
Q 006458 593 REIAKLMA--SVQAA---VYGS-----------ENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 593 rdI~~L~~--~~~aa---~~~~-----------~~~~lt~~~~~~al~~~~~~ 629 (644)
.||..||+ ++.+. .... ..+.+|..||++++......
T Consensus 720 ADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 720 ADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 99999994 22222 1111 12457888999998876543
No 9
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=294.80 Aligned_cols=243 Identities=26% Similarity=0.366 Sum_probs=207.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhc----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
..+.+|+||.|.++++..|..++.++.|+.. +-.+|+++||+||||||||+|||++|.+.|.||+.++++++.. +
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 4457899999999999999999999988753 3368899999999999999999999999999999999999976 4
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccc---cCcCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERN---KTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDL 514 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~---~~~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~l 514 (644)
.+.....++.+|..++... ||||||||||.+...|. ...........||.+|-++|. ...+++|+++||+++.+
T Consensus 385 ~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred cccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 4445789999999999776 89999999999998884 223456778899999999973 45679999999999999
Q ss_pred CHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH
Q 006458 515 DSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 592 (644)
Q Consensus 515 d~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg 592 (644)
|+++++ |||..|++++|+...|..|++.++...... .++.++..||.+|.||+|
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~------------------------~e~~dl~~~a~~t~gf~g 519 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD------------------------DEDVDLSKLASLTPGFSG 519 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC------------------------cchhhHHHHHhcCCCCcH
Confidence 999998 999999999999999999999999764321 355677779999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHHH
Q 006458 593 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQ 632 (644)
Q Consensus 593 rdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~ 632 (644)
.||.++|+.....+.......|+..+|..+++..+.++..
T Consensus 520 adl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~ 559 (774)
T KOG0731|consen 520 ADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEK 559 (774)
T ss_pred HHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccc
Confidence 9999999544333334455899999999999988877643
No 10
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.1e-30 Score=284.75 Aligned_cols=239 Identities=18% Similarity=0.233 Sum_probs=195.9
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhh-chhc-cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cchh
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATA-NTKA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQ 442 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~-~~~~-~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~~ 442 (644)
+..+|++|.|.+.++..+........ .... +..+++++|||||||||||++|+++|++++.+++.++++.+.. +.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe 302 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE 302 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh
Confidence 34569999999999998876433221 1222 2356789999999999999999999999999999999987654 6667
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhc--
Q 006458 443 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD-- 520 (644)
Q Consensus 443 ~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~-- 520 (644)
+...++.+|..+.... ||||||||+|.++..+.....+.....++..|+..++....+++||+|||.++.+|+++++
T Consensus 303 se~~l~~~f~~A~~~~-P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~G 381 (489)
T CHL00195 303 SESRMRQMIRIAEALS-PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKG 381 (489)
T ss_pred HHHHHHHHHHHHHhcC-CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCC
Confidence 8889999999988765 8999999999998765544445567788999999888777889999999999999999998
Q ss_pred ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHH
Q 006458 521 RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 521 Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
|||.+++|+.|+.++|..||+.++.+.... ..++.++..|+..|+||||+||..+|.
T Consensus 382 RFD~~i~v~lP~~~eR~~Il~~~l~~~~~~-----------------------~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 382 RFDEIFFLDLPSLEEREKIFKIHLQKFRPK-----------------------SWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhhcCCC-----------------------cccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 999999999999999999999999874211 134567999999999999999999996
Q ss_pred HHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 601 SVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 601 ~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
.+...++. .+..+|.++|..++...+.-
T Consensus 439 eA~~~A~~-~~~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 439 EAMYIAFY-EKREFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHH-cCCCcCHHHHHHHHHhcCCC
Confidence 55444443 33679999999999888753
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=274.83 Aligned_cols=247 Identities=23% Similarity=0.343 Sum_probs=200.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch---hc-cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~---~~-~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|++|.|.+..++.|+..+.. ..++ .. +-.|++++|||||||||||++++++|+.++.+|+.+.++.+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 56788999999999999999886542 2222 22 2357789999999999999999999999999999998877643
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ 513 (644)
+.++....+..+|..+.... |+||||||+|.++.++.+.. .+.....++..++..++. ...+++||+|||+++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~-P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcC-CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 44566678899999988665 89999999999987764322 234566788888888763 3468999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+|+++++ |||..|+|++|+.++|..||+.++.+... -.+.++..++..|+|||
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-------------------------~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-------------------------SEEVDLEDFVSRPEKIS 351 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CcccCHHHHHHHcCCCC
Confidence 9999998 99999999999999999999998865321 13346889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHHHHHHh
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKL 636 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~~~~~ 636 (644)
|+||..+|..+...+...+...|+.+||.+++...+..+...+.|
T Consensus 352 gaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~~~~~ 396 (398)
T PTZ00454 352 AADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDRDYDF 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccccchhc
Confidence 999999997666655556668999999999999988776555444
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-29 Score=272.46 Aligned_cols=209 Identities=26% Similarity=0.379 Sum_probs=180.1
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC-CCch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-PLGP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~-~~g~ 441 (644)
...|.+|-|.+.....|..++.....+. .+-.|+++||||||||||||+||++||.+++.||+.+++.++. ++.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 5579999999999999888776665443 3447999999999999999999999999999999999998875 4888
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC------CCCCEEEEEEeCCCCCCC
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD------QSKDIVLALATNRPGDLD 515 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~------~~~~viiI~ttN~~~~ld 515 (644)
+++..++++|+.|+... ||||||||||.+.++|.... .+..+.++..||..++. ....|+||++||+|+.||
T Consensus 266 ESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREEAQ-REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred ccHHHHHHHHHHHhccC-CeEEEeecccccccchhhHH-HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 99999999999999766 89999999999999987643 44567788888887763 246799999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
|+|++ |||..|.+..|+...|.+||+..++.+.+. .+-++..||..|.||.|.
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-------------------------g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-------------------------GDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-------------------------CCcCHHHHHhcCCCccch
Confidence 99998 999999999999999999999999875432 234688999999999999
Q ss_pred HHHHHHHHH
Q 006458 594 EIAKLMASV 602 (644)
Q Consensus 594 dI~~L~~~~ 602 (644)
||..||..+
T Consensus 399 DL~AL~~~A 407 (802)
T KOG0733|consen 399 DLMALCREA 407 (802)
T ss_pred hHHHHHHHH
Confidence 999999533
No 13
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-30 Score=257.60 Aligned_cols=212 Identities=28% Similarity=0.464 Sum_probs=180.5
Q ss_pred hhccCCCCCCccccChHHHHHHHH-HHHHhhchh---ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC
Q 006458 362 LASKNGNGFGDVILHPSLQKRIRQ-LSGATANTK---AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437 (644)
Q Consensus 362 l~~~~~~~~~~vig~~~~~~~l~~-l~~~~~~~~---~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~ 437 (644)
+..+|...|++|-|.+.+++.|+. ++.....+. ....|+++|||||||||||++||+++|.+.+..|+.++.+++.
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 345777889999999999999976 333444433 2336899999999999999999999999999999999999987
Q ss_pred C-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh---CCCCCCEEEEEEeCCCCC
Q 006458 438 P-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT---GDQSKDIVLALATNRPGD 513 (644)
Q Consensus 438 ~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~---~~~~~~viiI~ttN~~~~ 513 (644)
. +-+++...+..+|..|+... |+||||||||.|+..|+.+. ++..+.+-..||-.+ +.+..+++|+++||.||.
T Consensus 204 SKWmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 6 77788999999999998776 89999999998877665544 667777777777665 467788999999999999
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
||.++++||+..|++|+|....|..+++.++.... ..+++.++.+|+++|+||||.
T Consensus 282 LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp------------------------~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 282 LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP------------------------HVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred HHHHHHHHhhcceeccCCcHHHhhhhheeccCCCc------------------------cccchhhHHHHHhhcCCCCcC
Confidence 99999999999999999999999999999886532 248999999999999999999
Q ss_pred HHHHHH
Q 006458 594 EIAKLM 599 (644)
Q Consensus 594 dI~~L~ 599 (644)
||..++
T Consensus 338 DisivV 343 (439)
T KOG0739|consen 338 DISIVV 343 (439)
T ss_pred ceEEEe
Confidence 998755
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=239.82 Aligned_cols=283 Identities=23% Similarity=0.302 Sum_probs=214.9
Q ss_pred HHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHh----hch-h
Q 006458 320 IWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGAT----ANT-K 394 (644)
Q Consensus 320 ~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~----~~~-~ 394 (644)
+-..+++-+-||+..--.++.+--.-+.++.+..+-..+.. -..+|..++.++-|.+-.++.|+..+... ..+ .
T Consensus 105 ilstidrellkps~svalhrhsnalvdvlppeadssi~ml~-~~ekpdvsy~diggld~qkqeireavelplt~~~ly~q 183 (408)
T KOG0727|consen 105 ILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLG-PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQ 183 (408)
T ss_pred ehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccC-CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHH
Confidence 34456666777875433333222222333333322111111 12467778999999888888887644321 112 2
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 006458 395 AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC 473 (644)
Q Consensus 395 ~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~ 473 (644)
-+-.||+++|||||||||||+|++++|++....|+++.|++|.. +-+++...++.+|..++... |+||||||+|.+.-
T Consensus 184 igidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena-psiifideidaiat 262 (408)
T KOG0727|consen 184 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA-PSIIFIDEIDAIAT 262 (408)
T ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC-CcEEEeehhhhHhh
Confidence 33468999999999999999999999999999999999999875 55677888999999998766 89999999999988
Q ss_pred ccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHH
Q 006458 474 ERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 474 ~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
+|.+. +.....+.+|..+|..++ +...|+-+|++||+.+.+||++++ |+|..|+||+|+..+++-++.....+.
T Consensus 263 krfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm 342 (408)
T KOG0727|consen 263 KRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM 342 (408)
T ss_pred hhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc
Confidence 87543 334567888888888887 567899999999999999999998 999999999999999999998888765
Q ss_pred hhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 548 IAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.+ -++.+++.+..+-+..||.||..+|..+-..+...+..++...+|+++....+
T Consensus 343 ~l-------------------------s~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 343 NL-------------------------SDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred cC-------------------------CcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhc
Confidence 32 23457888888999999999999996555444455668999999999988776
Q ss_pred Hh
Q 006458 628 AE 629 (644)
Q Consensus 628 ~~ 629 (644)
..
T Consensus 398 k~ 399 (408)
T KOG0727|consen 398 KK 399 (408)
T ss_pred CC
Confidence 43
No 15
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=9.4e-29 Score=277.04 Aligned_cols=239 Identities=26% Similarity=0.374 Sum_probs=194.6
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
.+..+|++|+|.++++..+..++....++. .+..+++++|||||||||||+++++||..++.+|+.++++++.. +
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 566789999999999999988777655432 23467789999999999999999999999999999999887654 3
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld 515 (644)
.+.....++.+|..+.... |+||||||+|.++..+... ........+++.||..++. ...+++||+|||.++.+|
T Consensus 129 ~g~~~~~l~~~f~~a~~~~-p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred hcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 3445678899999987655 8999999999998877542 2234556788999988863 345799999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++ |||..|+|++|+.++|..||+.++..... -++..+..++..|.||||+
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-------------------------~~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-------------------------APDVDLKAVARRTPGFSGA 262 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-------------------------CcchhHHHHHHhCCCCCHH
Confidence 99998 99999999999999999999998865321 1345688999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
||..+|+.+...+...+...||.++|..+++..+..
T Consensus 263 dl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 263 DLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 999999754333333455789999999999987643
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=2.3e-28 Score=265.45 Aligned_cols=243 Identities=23% Similarity=0.372 Sum_probs=195.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..+...|++|.|.+..++.|..++.. ..+. ..+..|++++|||||||||||++|+++|+.++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45677899999999999999775543 2221 223367789999999999999999999999999999999988754
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC--CHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~--~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ 513 (644)
+.+.....++.+|..+.... |+||||||+|.+++.+.+... .......+..++..++. ...+++||+|||.++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~-p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred hhccchHHHHHHHHHHHHhcC-CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 44556677888999887655 899999999999877654332 34556677888877653 3468999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+|+++++ |||..|+|++|+.++|..||+.++..... -.+.++..|+..|+|||
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-------------------------~~~~~~~~la~~t~g~s 337 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-------------------------ADDVDLEELAELTEGAS 337 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-------------------------CCcCCHHHHHHHcCCCC
Confidence 9999997 99999999999999999999988765321 12246889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQ 632 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~ 632 (644)
|+||..+|..+...+.......|+.++|.++++.....+..
T Consensus 338 gadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 338 GADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 99999999766555555666889999999999998765543
No 17
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-28 Score=250.32 Aligned_cols=209 Identities=31% Similarity=0.442 Sum_probs=174.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHH-hhchhc--c---CCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGA-TANTKA--H---NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~~--~---~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
.-..+|+++-|.+.+++.++..+.. ...+.. . -.|+++||||||||||||++|+++|++.|.+|+.+.++.+..
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3345699999999999999775432 222111 1 158899999999999999999999999999999999998876
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC----CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~----~~~~~viiI~ttN~~~~ 513 (644)
+.++....+..+|..+.+.. |+||||||+|.+++.| ....++.....-+.|+..-+ +.+..|+|+++||+|.+
T Consensus 166 KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 67788889999999999877 8999999999999998 55557777766666665543 23345888889999999
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+|.+++||++..++++.|+..+|.+||+.++..... -++.++..+|..|+||||+
T Consensus 244 lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~-------------------------e~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 244 LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL-------------------------EDDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred HHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc-------------------------CcccCHHHHHHhcCCCcHH
Confidence 999999999999999999999999999999976432 1445799999999999999
Q ss_pred HHHHHHH
Q 006458 594 EIAKLMA 600 (644)
Q Consensus 594 dI~~L~~ 600 (644)
||..+|.
T Consensus 299 DLkelC~ 305 (386)
T KOG0737|consen 299 DLKELCR 305 (386)
T ss_pred HHHHHHH
Confidence 9999994
No 18
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=6.4e-28 Score=274.14 Aligned_cols=240 Identities=24% Similarity=0.351 Sum_probs=196.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhc----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
....+|++|+|.++++..+..++........ ...+++++||+||||||||++|+++|.+++.||+.++++++.. +
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 3456899999999999999998877766544 4456789999999999999999999999999999999988754 2
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld 515 (644)
.+.....+..+|..+.... ||||||||+|.++..+... ........+++.||..++. ...+++||++||.++.+|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENS-PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhHHHHHHHHHHHhcCC-CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 3334567888999887655 8999999999998776432 2344567789999988863 346799999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++ |||..|+|++|+.++|..||+.++.... ..++..+..||..|.||||+
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-------------------------~~~d~~l~~lA~~t~G~sga 390 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-------------------------LSPDVSLELIARRTPGFSGA 390 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-------------------------cchhHHHHHHHhcCCCCCHH
Confidence 99997 9999999999999999999999987621 13466899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
||..+|+.+...+...+...||.++|+.+++..+.+.
T Consensus 391 DL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~ 427 (638)
T CHL00176 391 DLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGL 427 (638)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhh
Confidence 9999997543333334557899999999999876543
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-27 Score=267.37 Aligned_cols=238 Identities=26% Similarity=0.392 Sum_probs=200.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhc-----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKA-----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~-----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..+..+|.++.|...++..+...+........ +..++.++|||||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45667899999999999999876654433222 4467789999999999999999999999999999999998766
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld 515 (644)
+.+++...+..+|..|.... ||||||||+|.+++.++....+ ....+++.+|..++ ....+|++|++||+|+.+|
T Consensus 315 k~vGesek~ir~~F~~A~~~~-p~iiFiDEiDs~~~~r~~~~~~-~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld 392 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLA-PSIIFIDEIDSLASGRGPSEDG-SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD 392 (494)
T ss_pred cccchHHHHHHHHHHHHHcCC-CcEEEEEchhhhhccCCCCCch-HHHHHHHHHHHHhcCCCccCceEEEecCCCccccC
Confidence 78899999999999999666 8999999999999988765422 33678999999886 5677899999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++ |||..++|++|+..+|..|++.++...... ...+.++..++..|+||||.
T Consensus 393 ~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~-----------------------~~~~~~~~~l~~~t~~~sga 449 (494)
T COG0464 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP-----------------------LAEDVDLEELAEITEGYSGA 449 (494)
T ss_pred HhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc-----------------------chhhhhHHHHHHHhcCCCHH
Confidence 99999 999999999999999999999999753210 13567899999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-CCccCHHHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSE-NCVLDPSLFREVVDYK 626 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~-~~~lt~~~~~~al~~~ 626 (644)
||..+|..+...+.... ...+|.++|..++...
T Consensus 450 di~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 450 DIAALVREAALEALREARRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhc
Confidence 99999965555444444 5789999999998873
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.6e-27 Score=278.72 Aligned_cols=238 Identities=24% Similarity=0.376 Sum_probs=192.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHH-hhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGA-TANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.+...|++|.|.+.++..|...+.. .... ..+..+++++|||||||||||++|+++|+.++.+|+.++++++..
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4556799999999999999876553 2221 123457789999999999999999999999999999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCH
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~ 516 (644)
+.+++...++.+|..+.... ||||||||+|.|++.++..........+++.||..++ ....+++||+|||+++.+|+
T Consensus 527 ~vGese~~i~~~f~~A~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcC-CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 66778889999999998766 8999999999999887655444556788999999887 35678999999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
++++ |||.+|+|++|+.++|..||+.++.+... -++.++..||..|+||||+|
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-------------------------~~~~~l~~la~~t~g~sgad 660 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-------------------------AEDVDLEELAEMTEGYTGAD 660 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------CccCCHHHHHHHcCCCCHHH
Confidence 9997 99999999999999999999987654321 23446899999999999999
Q ss_pred HHHHHHHHHH-HHhC-----------------CCCCccCHHHHHHHHHHHHH
Q 006458 595 IAKLMASVQA-AVYG-----------------SENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 595 I~~L~~~~~a-a~~~-----------------~~~~~lt~~~~~~al~~~~~ 628 (644)
|..+|..+.. +... .....|+.+||..++.....
T Consensus 661 i~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 661 IEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 9999953322 2220 01247999999999976543
No 21
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.7e-28 Score=263.96 Aligned_cols=239 Identities=23% Similarity=0.312 Sum_probs=193.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchhc---cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTKA---HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~~---~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.-|...|+||-|.++++..|.+.+.. ...+.. +-++..+||||||||||||.+||++|.++...|+.+.|.++..
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 35667899999999999999775543 222221 1134458999999999999999999999999999999999876
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCH-HHHHHHHHHHHHhCC----CCCCEEEEEEeCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSE-AQRSALNALLFRTGD----QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~-~~~~~l~~lL~~~~~----~~~~viiI~ttN~~~~ 513 (644)
|.++++.+++++|..|+... ||||||||+|.|.+.|+.++++. -+.+++..||-+++. ...++.||++||+|+.
T Consensus 745 YVGqSE~NVR~VFerAR~A~-PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAA-PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HhcchHHHHHHHHHHhhccC-CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 77899999999999998766 99999999999999988766543 578899999999873 4568999999999999
Q ss_pred CCHHHhc--ccceeEecCCCC-HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc-CC
Q 006458 514 LDSAVAD--RIDEVLEFPLPG-QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-EG 589 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~-~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-~G 589 (644)
|||+|++ |||..+++.++. .+.+..||+....++..+ .+.++.+||++| ..
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-------------------------edVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-------------------------EDVDLVEIAKKCPPN 878 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-------------------------CCcCHHHHHhhCCcC
Confidence 9999998 999999998885 566888999888776432 335799999998 58
Q ss_pred CcHHHHHHHH-HHHHHHHhC----------------CCCCccCHHHHHHHHHHHHH
Q 006458 590 FSGREIAKLM-ASVQAAVYG----------------SENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 590 ~SgrdI~~L~-~~~~aa~~~----------------~~~~~lt~~~~~~al~~~~~ 628 (644)
|||+|+-.|| .+|.+|... ...-+++++||-++.+....
T Consensus 879 ~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 879 MTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 9999999999 444444321 12257899999999887654
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=259.43 Aligned_cols=239 Identities=21% Similarity=0.319 Sum_probs=191.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch---h-ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT---K-AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~---~-~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|++|.|.+..++.|..++.. ...+ . .+..|+.++|||||||||||++|+++|+.++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 46778899999999999999876643 2221 1 22357789999999999999999999999999999999888754
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ 513 (644)
+.+.....+..+|..+.... |+||||||+|.++.++... .........+..+|..++. ...++.||+|||+++.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENA-PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCC-CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 45566677889999888655 8999999999998876432 2233456667777777753 3568999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+|+++++ |||..|+|++|+.++|..||+.++.++.. -.+.++..++..|+|||
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-------------------------~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-------------------------AEDVDLEEFIMAKDELS 389 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-------------------------CcCcCHHHHHHhcCCCC
Confidence 9999996 99999999999999999999998865421 12346889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
|+||..+|..+...+.......||.+||.++++....
T Consensus 390 gAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 390 GADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 9999999965544444455689999999999998754
No 23
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-28 Score=267.74 Aligned_cols=243 Identities=27% Similarity=0.387 Sum_probs=205.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhc----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
....+|.|+.|.++++..+..++..+.++.. ++..|+++||+||||||||+||+++|.+.+.||+.++++++.. +
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 4556899999999999999999988877653 3467799999999999999999999999999999999999987 4
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhCCCC--CCEEEEEEeCCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGDQS--KDIVLALATNRPGDLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~~~~--~~viiI~ttN~~~~ld 515 (644)
.+-+...++.+|..+++.. |||+||||+|.+...|... +......+++|.+|.+++... ..+++|++||+|+.+|
T Consensus 224 VGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred cCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 4556778999999999877 7999999999999887533 334566689999999998544 6789999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
++|+| |||..|.++.|+...|.+|++.++.+.... .+..+..||+.|.||||.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-------------------------~~Vdl~~iAr~tpGfsGA 357 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-------------------------EDVDLKKIARGTPGFSGA 357 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-------------------------CcCCHHHHhhhCCCcccc
Confidence 99998 999999999999999999999887654321 233566699999999999
Q ss_pred HHHHHHH--HHHHHHhCCCCCccCHHHHHHHHHHHHHhHHHHHH
Q 006458 594 EIAKLMA--SVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRK 635 (644)
Q Consensus 594 dI~~L~~--~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~~~~ 635 (644)
|+.++++ ++.++. .+...+|..+|.+++++...+..++..
T Consensus 358 dL~nl~NEAal~aar--~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 358 DLANLLNEAALLAAR--RNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred hHhhhHHHHHHHHHH--hcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 9999994 444444 555899999999999999887766655
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-27 Score=232.93 Aligned_cols=242 Identities=24% Similarity=0.323 Sum_probs=199.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-----hchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGAT-----ANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~-----~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
.+|..++.+|-|..+..+.|+.++... +....+-.||+++|+|||||||||.+|+++|+..+..|+++-|+++..
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 578889999999988888888766532 222334479999999999999999999999999999999999999875
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+++...++++|..|+..+ .||||+||+|.+.+.|... +.....+.....++..++ +..+|+-++++||+|+.
T Consensus 250 kyvgegarmvrelf~martkk-aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKK-ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccc-eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 77788889999999998654 8999999999998887554 334456666666666665 56789999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
|||+|++ |+|..++|.+|+.+-|..|++.+.+.... -.|.-++.||+.|..-+
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv-------------------------erdir~ellarlcpnst 383 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV-------------------------ERDIRFELLARLCPNST 383 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEecccccc-------------------------ccchhHHHHHhhCCCCc
Confidence 9999998 99999999999999999999988765422 23456788999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~ 631 (644)
|.+|+.+|..+-..+.+.-..+.|+.+|.++++..+.+..
T Consensus 384 gaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 384 GAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred chHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999965554444444589999999999999887653
No 25
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=2.7e-26 Score=247.77 Aligned_cols=237 Identities=25% Similarity=0.370 Sum_probs=187.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..+...|+++.|.+..++.|...+.. ..+. ..+..+++++|||||||||||++|+++|+.++.+|+.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 46777899999999999999776543 2221 123357789999999999999999999999999999998776543
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ 513 (644)
+.+.....+..+|..+.... |+||||||+|.++..+.... ........+..++..++. ...+++||+|||.++.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 34455667788888887654 89999999999987664432 234556677888877753 3568999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+|+++++ |||..|+|+.|+.++|..|++.++..... -.+..+..|+..|+|||
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-------------------------~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-------------------------AEDVDLEAIAKMTEGAS 328 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CccCCHHHHHHHcCCCC
Confidence 9999997 99999999999999999999988754321 12235889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
|+||..+|..+...+.......||.++|.++++..
T Consensus 329 g~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 329 GADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999766665566667899999999998763
No 26
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-26 Score=226.37 Aligned_cols=241 Identities=23% Similarity=0.298 Sum_probs=194.1
Q ss_pred ccCCCCCCccccChHHHHHHHH-HHHHhh----chhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQ-LSGATA----NTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~-l~~~~~----~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|...+.+|-|.+...+.+.. ++.... ....+-.||+++|+|||||||||++|++.|.+.+..|..+.|..+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 4677789999887766655533 332222 22334479999999999999999999999999999999998888766
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ 513 (644)
+.+++...++..|..++... |+||||||+|.++.+|..+. .....+.....||..++. ....+-+|++||+.+-
T Consensus 244 MfIGdGAkLVRDAFaLAKEka-P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhcchHHHHHHHHHHhhccC-CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 55677788899999998766 89999999999988876553 234556666677777764 3456899999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+||++++ |+|+.|+||.|+.+.|.+|++.+..+... -+|..+++||+.|++|.
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv-------------------------~~DvNfeELaRsTddFN 377 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV-------------------------SDDVNFEELARSTDDFN 377 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC-------------------------CCCCCHHHHhhcccccC
Confidence 9999998 99999999999999999999999876532 24567999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
|.+....|..+-.++..++...++-++|.+.+....+..
T Consensus 378 GAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 378 GAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred chhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhh
Confidence 999999997777777777778999999998887665443
No 27
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=224.39 Aligned_cols=238 Identities=24% Similarity=0.326 Sum_probs=190.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhh-ch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATA-NT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+++-+-|.+...+.|+.++.... .+ ..+-..|+++|||||||||||.+|+++|.+..+.|++++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 3455566656667777777776554321 11 122356789999999999999999999999999999999999875
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+++...++++|-.|+... |+|||.||||.+.+.|..+ +.....+.....+|..++ +...|+-+|++||+.+-
T Consensus 220 k~igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 66778888999999999877 8999999999998876443 234456667777777776 56789999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+||++++ |+|..|+||+|+.+.|.+||+.+-.+..+- ...++..||....|.|
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-------------------------rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-------------------------RGINLRKIAEKMPGAS 353 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-------------------------cccCHHHHHHhCCCCc
Confidence 9999998 999999999999999999999998775432 2236889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
|.++...|..+-..+...-..-+|.++|+-++....
T Consensus 354 gaevk~vcteagm~alrerrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred cchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999995444444444447899999999887654
No 28
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=251.61 Aligned_cols=210 Identities=26% Similarity=0.392 Sum_probs=177.6
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchh-----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cch
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTK-----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 441 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~-----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~ 441 (644)
-.|++|-|..++++.+.+++.....+. .+-+-..+||||||||||||+||.++|..++..|+.+.|.++.. +.+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 579999999999999988776543321 12233358999999999999999999999999999999998765 777
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCHHHh
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVA 519 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~al~ 519 (644)
.++..++.+|..|...+ |||||+||+|.+.++|+.... .-..+++|.+|.+++ +--.+|.|+++|.+|+.+||+++
T Consensus 744 aSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDsT-GVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDST-GVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred ccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCCC-CchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 88899999999998665 999999999999999977652 356779999999997 34567889999999999999999
Q ss_pred c--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHH
Q 006458 520 D--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 597 (644)
Q Consensus 520 ~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~ 597 (644)
| |+|..++.++|+..+|.+|++...+.+.. -++.+++.+|.+|+||||+||..
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-------------------------~~~vdl~~~a~~T~g~tgADlq~ 876 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-------------------------DTDVDLECLAQKTDGFTGADLQS 876 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCC-------------------------ccccchHHHhhhcCCCchhhHHH
Confidence 8 99999999999999999999988765421 35678999999999999999999
Q ss_pred HHHHHHH
Q 006458 598 LMASVQA 604 (644)
Q Consensus 598 L~~~~~a 604 (644)
|+-.++.
T Consensus 877 ll~~A~l 883 (952)
T KOG0735|consen 877 LLYNAQL 883 (952)
T ss_pred HHHHHHH
Confidence 9954443
No 29
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-25 Score=253.30 Aligned_cols=234 Identities=21% Similarity=0.286 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHH-HHHHhhchhc
Q 006458 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQ-LSGATANTKA 395 (644)
Q Consensus 317 ~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~-l~~~~~~~~~ 395 (644)
...+...+.+|+| +|...+...+...|.++...+ -..||||+++...|.+ +..+..+...
T Consensus 456 ~~~Ia~vv~~~Tg------------IPv~~l~~~e~~kll~le~~L-------~~rViGQd~AV~avs~aIrraRaGL~d 516 (786)
T COG0542 456 EDDIAEVVARWTG------------IPVAKLLEDEKEKLLNLERRL-------KKRVIGQDEAVEAVSDAIRRARAGLGD 516 (786)
T ss_pred HHHHHHHHHHHHC------------CChhhhchhhHHHHHHHHHHH-------hcceeChHHHHHHHHHHHHHHhcCCCC
Confidence 4477888999999 898888889999999999888 8999999999999955 7778888889
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHcC---CCeEEEeCCCC--------------CCCchhHHHHHHHHHHHHHhcC
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDV--------------APLGPQAVTKIHQLFDWAKKSK 458 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---~~~~~i~~~~l--------------~~~g~~~~~~l~~~f~~a~~~~ 458 (644)
+++|.++|||.||+|||||.||++||..+. ..++++++|++ +++|++..+.+ +.+.+.+
T Consensus 517 p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~L----TEaVRr~ 592 (786)
T COG0542 517 PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQL----TEAVRRK 592 (786)
T ss_pred CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccch----hHhhhcC
Confidence 999999999999999999999999999996 78999998876 44555554444 4488889
Q ss_pred CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCC----------------
Q 006458 459 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRP---------------- 511 (644)
Q Consensus 459 ~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~---------------- 511 (644)
||+||+||||++ ++..++|.||+.+++ +++|++||||||..
T Consensus 593 PySViLlDEIEK------------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~ 660 (786)
T COG0542 593 PYSVILLDEIEK------------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADK 660 (786)
T ss_pred CCeEEEechhhh------------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchh
Confidence 999999999999 788999999999874 57899999999952
Q ss_pred ------------CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHH
Q 006458 512 ------------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 579 (644)
Q Consensus 512 ------------~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 579 (644)
..|.|+|++|+|.+|.|.+.+.+...+|+...+..+..... .+++.+ .++++.
T Consensus 661 ~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~--------------~~~i~l-~~s~~a 725 (786)
T COG0542 661 EALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLA--------------ERGITL-ELSDEA 725 (786)
T ss_pred hhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHH--------------hCCceE-EECHHH
Confidence 14679999999999999999999999999999998764422 112222 389999
Q ss_pred HHHHHHHcC--CCcHHHHHHHHH
Q 006458 580 LMEAAAKTE--GFSGREIAKLMA 600 (644)
Q Consensus 580 l~~LA~~t~--G~SgrdI~~L~~ 600 (644)
.++|+..+- .|..|-|..++.
T Consensus 726 ~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 726 KDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHHHHHhccCCCcCchHHHHHHH
Confidence 999999853 456677777763
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=6.5e-26 Score=260.27 Aligned_cols=237 Identities=25% Similarity=0.348 Sum_probs=190.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~ 441 (644)
...|+++.|.+..+..+..+........ .....++++||+||||||||+++++++.+++.+|+.++++++.. +.+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 3458999999999999988776654322 23355678999999999999999999999999999999988754 334
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCCHH
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDSA 517 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld~a 517 (644)
.....+..+|..+.... ||||||||+|.++..+... ........+++.+|..++. ...+++||+|||+|+.+|++
T Consensus 228 ~~~~~~~~~f~~a~~~~-P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 228 VGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred ccHHHHHHHHHHHHhcC-CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 45567888898887654 8999999999998877542 2344566789999988874 34579999999999999999
Q ss_pred Hhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 518 VAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 518 l~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+++ |||..|+|++|+.++|..||+.++.+... ..+.++..+++.|.||||+||
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l-------------------------~~~~d~~~la~~t~G~sgadl 361 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-------------------------APDIDAAIIARGTPGFSGADL 361 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC-------------------------CCcCCHHHHHhhCCCCCHHHH
Confidence 997 99999999999999999999999876421 122356779999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 596 AKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 596 ~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
.+||+.+...+...+...||..+|..+++.....
T Consensus 362 ~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 362 ANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 9999655544444566899999999999866543
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=1.1e-25 Score=267.94 Aligned_cols=207 Identities=14% Similarity=0.166 Sum_probs=162.9
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCC------------c-------------------------
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL------------G------------------------- 440 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~------------g------------------------- 440 (644)
.|++||||+||||||||+||++||.+++.||+.++++++... |
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 678999999999999999999999999999999998877531 1
Q ss_pred -----hhHHH--HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----CCCCEEEEEEe
Q 006458 441 -----PQAVT--KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----QSKDIVLALAT 508 (644)
Q Consensus 441 -----~~~~~--~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----~~~~viiI~tt 508 (644)
+..++ .++.+|+.|+... ||||||||||.+..... ....++.|+..++. ...+|+||+||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~S-PCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMS-PCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCC-CeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 11122 3788999999876 89999999999976421 11246677777652 24579999999
Q ss_pred CCCCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH
Q 006458 509 NRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 586 (644)
Q Consensus 509 N~~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~ 586 (644)
|+|+.+||+|++ |||..|+++.|+..+|.+++...+..... .+. -+..++..+|+.
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~---------------------~L~-~~~vdl~~LA~~ 1837 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGF---------------------HLE-KKMFHTNGFGSI 1837 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCC---------------------CCC-cccccHHHHHHh
Confidence 999999999998 99999999999999999988765422111 110 111358899999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHHHHH
Q 006458 587 TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRR 634 (644)
Q Consensus 587 t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~~~ 634 (644)
|.||||+||+.||..+...+...+...|+.++|+.|++..+.+...+.
T Consensus 1838 T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~ 1885 (2281)
T CHL00206 1838 TMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQV 1885 (2281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc
Confidence 999999999999976555555566689999999999999998876543
No 32
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-26 Score=230.50 Aligned_cols=241 Identities=22% Similarity=0.329 Sum_probs=190.1
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHh-hc---hh-ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC
Q 006458 363 ASKNGNGFGDVILHPSLQKRIRQLSGAT-AN---TK-AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 437 (644)
Q Consensus 363 ~~~~~~~~~~vig~~~~~~~l~~l~~~~-~~---~~-~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~ 437 (644)
...|..+|.++-|.+...+.|..-+... .. +. -+-.||++++|||+||||||.||+++|+.....|+++.|+++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 3567778999988777666665433211 11 11 2236899999999999999999999999999999999999986
Q ss_pred C-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCC
Q 006458 438 P-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPG 512 (644)
Q Consensus 438 ~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~ 512 (644)
. +-+++...++.+|..|.... |+|+||||||.+..+|-++. .....+.....||+.++ +...++-||++||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 5 66677888999999998777 89999999999988875543 23345566667777776 4567899999999999
Q ss_pred CCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 513 DLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 513 ~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
.|||+|++ |+|+.|+|+.|+...+.+|+..+..+..+. .+..++.+.-.-+.+
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-------------------------~dVnle~li~~kddl 390 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-------------------------EDVNLEELIMTKDDL 390 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-------------------------ccccHHHHhhccccc
Confidence 99999998 999999999999999999999887664321 334677777777899
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 591 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 591 SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
||.||..+|..+-..+.......+|.++|.++.+.....
T Consensus 391 SGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 391 SGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999999544444433344789999999998877653
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=6.6e-25 Score=242.19 Aligned_cols=253 Identities=19% Similarity=0.271 Sum_probs=181.5
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHH-hhch---h-ccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------
Q 006458 363 ASKNGNGFGDVILHPSLQKRIRQLSGA-TANT---K-AHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------- 427 (644)
Q Consensus 363 ~~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~---~-~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------- 427 (644)
...|..+|++|.|.+..++.+...+.. .... . .+-.|++++|||||||||||++++++|+.++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 346778999999999999999775432 2221 2 233577899999999999999999999998654
Q ss_pred eEEEeCCCCC-CCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC--CCCC
Q 006458 428 YALMTGGDVA-PLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKD 501 (644)
Q Consensus 428 ~~~i~~~~l~-~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~--~~~~ 501 (644)
|+.+.++++. .+.++....+..+|..+... ..|+||||||+|.++..++....++....+++.||..++. ...+
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 4444555543 35567777888899888753 3589999999999998876554444556778899988863 3468
Q ss_pred EEEEEEeCCCCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHH
Q 006458 502 IVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 579 (644)
Q Consensus 502 viiI~ttN~~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 579 (644)
++||+|||+++.||++++| |||..|+|++|+.++|..||+.++...... ...+.. ....+...
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l---------~~~l~~------~~g~~~a~ 398 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL---------DADLAE------FDGDREAT 398 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc---------hHHHHH------hcCCCHHH
Confidence 9999999999999999998 999999999999999999999998642110 000000 00011111
Q ss_pred HHH-----------------------------HHHHcCCCcHHHHHHHHHHHHHHHh----CCCCCccCHHHHHHHHHHH
Q 006458 580 LME-----------------------------AAAKTEGFSGREIAKLMASVQAAVY----GSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 580 l~~-----------------------------LA~~t~G~SgrdI~~L~~~~~aa~~----~~~~~~lt~~~~~~al~~~ 626 (644)
+.. ....++.+||+.|.++|..+...+. ......|+.+|+..++..-
T Consensus 399 ~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 399 AAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHh
Confidence 111 1223577999999999955543332 2344689999999998876
Q ss_pred HHhH
Q 006458 627 VAEH 630 (644)
Q Consensus 627 ~~~~ 630 (644)
-.++
T Consensus 479 ~~~~ 482 (512)
T TIGR03689 479 FRES 482 (512)
T ss_pred hccc
Confidence 6554
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=8.7e-24 Score=220.39 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=135.7
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHh----cCCCeEEEEeccch
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKK----SKRGLLLFIDEADA 470 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~~~~~~l~~~f~~a~~----~~~~~VL~IDEid~ 470 (644)
+..+|.+++||||||||||++|+++|+++|.+++.++++++.. +.++++..++.+|..|.. ...||||||||||.
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 3478899999999999999999999999999999999998865 888999999999999874 34699999999999
Q ss_pred hhhccccCcCCHHHHHHHHHHHHHhC--------------CCCCCEEEEEEeCCCCCCCHHHhc--ccceeEecCCCCHH
Q 006458 471 FLCERNKTYMSEAQRSALNALLFRTG--------------DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQE 534 (644)
Q Consensus 471 l~~~r~~~~~~~~~~~~l~~lL~~~~--------------~~~~~viiI~ttN~~~~ld~al~~--Rfd~~i~~~~p~~~ 534 (644)
+++.+.+.......+.+...|+..++ +...+++||+|||+|+.||++|+| |||..+ ..|+.+
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 99988644322233444466766543 235679999999999999999999 999865 589999
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006458 535 ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 589 (644)
Q Consensus 535 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G 589 (644)
+|..||+.++.+.. ++..++..|+..+.|
T Consensus 302 ~R~eIL~~~~r~~~--------------------------l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 302 DRIGVVHGIFRDDG--------------------------VSREDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHHHhccCC--------------------------CCHHHHHHHHHcCCC
Confidence 99999999987632 556677777777655
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=230.75 Aligned_cols=238 Identities=26% Similarity=0.371 Sum_probs=186.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhc----hhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATAN----TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~----~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
..+...|+++-|...+++.+..++..... ...-..|.+++||.||||||||+|+++||.+++..|..++.+.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 34556799999999999999775443221 1222357789999999999999999999999999999999999876
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC----CCCCCEEEEEEeCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRPGDL 514 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~----~~~~~viiI~ttN~~~~l 514 (644)
+.++....++.+|..|+... |+|+||||+|.++.+|.... .+..+.....+|-..+ ....+++||+|||.|+.+
T Consensus 226 ~~Ge~eK~vralf~vAr~~q-PsvifidEidslls~Rs~~e-~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQ-PSVIFIDEIDSLLSKRSDNE-HESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred ccChHHHHHHHHHHHHHhcC-CeEEEechhHHHHhhcCCcc-cccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 66777889999999998665 89999999999999984433 3334444444443332 344589999999999999
Q ss_pred CHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 515 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 515 d~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
|.++++||...+++|+|+.+.|..||+.++.+.. +++++.++..|++.|+||||.|
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~------------------------~~l~~~d~~~l~~~Tegysgsd 359 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQP------------------------NGLSDLDISLLAKVTEGYSGSD 359 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCC------------------------CCccHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999998752 2378899999999999999999
Q ss_pred HHHHHHHHHHHHh-------------CCCCCccCHHHHHHHHHHHH
Q 006458 595 IAKLMASVQAAVY-------------GSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 595 I~~L~~~~~aa~~-------------~~~~~~lt~~~~~~al~~~~ 627 (644)
|..||..+...-. ...-..++..+|..++....
T Consensus 360 i~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 360 ITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred HHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhc
Confidence 9999954332111 11225666777777766543
No 36
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.8e-23 Score=226.59 Aligned_cols=277 Identities=21% Similarity=0.291 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHhhchhcc
Q 006458 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAH 396 (644)
Q Consensus 317 ~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~ 396 (644)
+.|+.+|+++.+. +||. ..+....+|.+....| +..++++ +.++++|-.++.-.......
T Consensus 289 ~~ViRnYlDwll~------------lPW~-~~sk~~~Dl~~a~~iL-d~dHYGL------ekVKeRIlEyLAV~~l~~~~ 348 (782)
T COG0466 289 ATVIRNYLDWLLD------------LPWG-KRSKDKLDLKKAEKIL-DKDHYGL------EKVKERILEYLAVQKLTKKL 348 (782)
T ss_pred HHHHHHHHHHHHh------------CCCc-cccchhhhHHHHHHHh-cccccCc------hhHHHHHHHHHHHHHHhccC
Confidence 5699999999999 9994 4445566666666665 4445444 55678886655444333333
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC----------CCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA----------PLGPQAVTKIHQLFDWAKKSKRGLLLFID 466 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~----------~~g~~~~~~l~~~f~~a~~~~~~~VL~ID 466 (644)
..| -++|+||||+|||+|+++||+.+|..|++++.+.+. +|.+...+.+-.-+..+...+| |++||
T Consensus 349 kGp--ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP--v~LLD 424 (782)
T COG0466 349 KGP--ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP--VFLLD 424 (782)
T ss_pred CCc--EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC--eEEee
Confidence 334 489999999999999999999999999999977762 2445566677777777877764 89999
Q ss_pred ccchhhhccccCc-------CCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHH
Q 006458 467 EADAFLCERNKTY-------MSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKL 539 (644)
Q Consensus 467 Eid~l~~~r~~~~-------~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~I 539 (644)
|||++..+-.+.. .++.+...|...+-.++-+-++|+||+|+|..+.++.+|++|+ ++|+++-++.++...|
T Consensus 425 EIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~I 503 (782)
T COG0466 425 EIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEI 503 (782)
T ss_pred chhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcce-eeeeecCCChHHHHHH
Confidence 9999976532221 2333344444444445556789999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH-----HHHHHHHHH-HHHHHhCCCC--
Q 006458 540 LKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG-----REIAKLMAS-VQAAVYGSEN-- 611 (644)
Q Consensus 540 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg-----rdI~~L~~~-~~aa~~~~~~-- 611 (644)
.+.||-........... .. -.++|+.+..|.+.+..-+| |+|.++|+. +.....+...
T Consensus 504 Ak~~LiPk~~~~~gL~~-----------~e---l~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~ 569 (782)
T COG0466 504 AKRHLIPKQLKEHGLKK-----------GE---LTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSI 569 (782)
T ss_pred HHHhcchHHHHHcCCCc-----------cc---eeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 99998554433222111 11 23889999999888644444 788888853 3333444443
Q ss_pred CccCHHHHHHHHHHHHHhHHH
Q 006458 612 CVLDPSLFREVVDYKVAEHQQ 632 (644)
Q Consensus 612 ~~lt~~~~~~al~~~~~~~~~ 632 (644)
..++...+.+.+...+..+..
T Consensus 570 ~~i~~~~l~~yLG~~~f~~~~ 590 (782)
T COG0466 570 VKIDEKNLKKYLGVPVFRYGK 590 (782)
T ss_pred eeeCHHHHHHHhCCcccCccc
Confidence 368999999988877766543
No 37
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.4e-22 Score=217.51 Aligned_cols=247 Identities=21% Similarity=0.254 Sum_probs=170.1
Q ss_pred CchhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHhhchh
Q 006458 315 EGAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTK 394 (644)
Q Consensus 315 ~~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~ 394 (644)
....++.+|+++.+. +||. ..+.+...|......| + +|=.|..+++++|-.++.-...
T Consensus 375 sEfnvtrNYLdwlt~------------LPWg-k~S~En~dl~~Ak~iL-d------eDHYgm~dVKeRILEfiAV~kL-- 432 (906)
T KOG2004|consen 375 SEFNVTRNYLDWLTS------------LPWG-KSSTENLDLARAKEIL-D------EDHYGMEDVKERILEFIAVGKL-- 432 (906)
T ss_pred cchhHHHHHHHHHHh------------CCCC-CCChhhhhHHHHHHhh-c------ccccchHHHHHHHHHHHHHHhh--
Confidence 346799999999999 9994 4455555665555555 3 3344556668888665432211
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----------CchhHHHHHHHHHHHHHhcCCCeEEE
Q 006458 395 AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------LGPQAVTKIHQLFDWAKKSKRGLLLF 464 (644)
Q Consensus 395 ~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----------~g~~~~~~l~~~f~~a~~~~~~~VL~ 464 (644)
.+....+-++|+||||+|||+++++||+.+|+.|++++.+.+.. |.+...+.+-..+......+| +++
T Consensus 433 rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP--liL 510 (906)
T KOG2004|consen 433 RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP--LIL 510 (906)
T ss_pred cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc--eEE
Confidence 12222345999999999999999999999999999998766522 445566777777777776663 889
Q ss_pred EeccchhhhccccCc-------CCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHH
Q 006458 465 IDEADAFLCERNKTY-------MSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERF 537 (644)
Q Consensus 465 IDEid~l~~~r~~~~-------~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~ 537 (644)
|||||++.+.-.++. .++.+...|+..+-.+.-+-+.|+||||.|..+.|+++|++|+ ++|+++-+..++..
T Consensus 511 iDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv 589 (906)
T KOG2004|consen 511 IDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKV 589 (906)
T ss_pred eehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhh-heeeccCccHHHHH
Confidence 999999973222111 1222222233333223345678999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH-----HHHHHHHH
Q 006458 538 KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG-----REIAKLMA 600 (644)
Q Consensus 538 ~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg-----rdI~~L~~ 600 (644)
.|.+.||-...... +...-..-.++++.+..|...+..-+| +.|.++|+
T Consensus 590 ~IA~~yLip~a~~~--------------~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 590 KIAERYLIPQALKD--------------CGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHhhhhHHHHH--------------cCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999986544322 111222234888888887776544444 56666774
No 38
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.90 E-value=4.2e-21 Score=225.48 Aligned_cols=268 Identities=20% Similarity=0.236 Sum_probs=176.6
Q ss_pred chhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHhhchhc
Q 006458 316 GAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKA 395 (644)
Q Consensus 316 ~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~ 395 (644)
...++..|++++++ +||...... ...+.++...+ -++++|++.+++.|..++.......
T Consensus 285 ~~~~~~~yl~~~~~------------ip~~~~~~~-~~~~~~~~~~l-------~~~~~G~~~~k~~i~~~~~~~~~~~- 343 (775)
T TIGR00763 285 EFTVTRNYLDWLTD------------LPWGKYSKE-NLDLKRAKEIL-------DEDHYGLKKVKERILEYLAVQKLRG- 343 (775)
T ss_pred hHHHHHHHHHHHHC------------CCCcccccc-hhhHHHHHHHh-------hhhcCChHHHHHHHHHHHHHHHhhc-
Confidence 35689999999999 999754333 44455555544 4568899999999977554332211
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC----------CCchhHHHHHHHHHHHHHhcCCCeEEEE
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA----------PLGPQAVTKIHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~----------~~g~~~~~~l~~~f~~a~~~~~~~VL~I 465 (644)
.....++||+||||||||++|++||+.++.+++.++++.+. .+.+...+.+...|..+...+ .||||
T Consensus 344 -~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~--~vill 420 (775)
T TIGR00763 344 -KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKN--PLFLL 420 (775)
T ss_pred -CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCC--CEEEE
Confidence 11223799999999999999999999999999999876542 122333445566676665443 48999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHH-----h-------CCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCH
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFR-----T-------GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQ 533 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~-----~-------~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~ 533 (644)
||||++.+...+. ...+|..+|.. + ..+.++++||+|||.++.++++|++|| .+|+|+.|+.
T Consensus 421 DEidk~~~~~~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~ 494 (775)
T TIGR00763 421 DEIDKIGSSFRGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRM-EVIELSGYTE 494 (775)
T ss_pred echhhcCCccCCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCe-eEEecCCCCH
Confidence 9999997532211 11222222221 0 012368999999999999999999999 6899999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc-CCCcHHHHHHHH----HHH-HHHHh
Q 006458 534 EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-EGFSGREIAKLM----ASV-QAAVY 607 (644)
Q Consensus 534 ~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-~G~SgrdI~~L~----~~~-~aa~~ 607 (644)
+++..|++.++........... +..+ .++++.+..|+..+ ..+..|+|..++ ..+ .....
T Consensus 495 ~e~~~I~~~~l~~~~~~~~~l~-----------~~~~---~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 495 EEKLEIAKKYLIPKALEDHGLK-----------PDEL---KITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-----------cceE---EECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999998854332211000 0011 37899999998754 345556666655 222 11111
Q ss_pred -CCC------CCccCHHHHHHHHHHHH
Q 006458 608 -GSE------NCVLDPSLFREVVDYKV 627 (644)
Q Consensus 608 -~~~------~~~lt~~~~~~al~~~~ 627 (644)
+.. ...++.+++...+..-.
T Consensus 561 ~~~~~~~~~~~v~i~~~~~~~~lg~~~ 587 (775)
T TIGR00763 561 QGEKKKSEAESVVITPDNLKKYLGKPV 587 (775)
T ss_pred ccCcccCCcccccCCHHHHHHhcCccc
Confidence 211 15788888888776544
No 39
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-23 Score=209.28 Aligned_cols=235 Identities=23% Similarity=0.343 Sum_probs=179.0
Q ss_pred CCCCCccccChHHHHHHHHHHH-Hhh----chhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cc
Q 006458 367 GNGFGDVILHPSLQKRIRQLSG-ATA----NTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LG 440 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~-~~~----~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g 440 (644)
..+|+++-|.-.....++..+. ... ....+-.||.+++||||||||||.+|+++|..+|.+|+.+..+.+.. +.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 3478888887766666655322 222 22334578899999999999999999999999999999998888765 77
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC--CHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCH
Q 006458 441 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~--~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~ 516 (644)
++....+++.|..|.... |||||+||||..++.+.+... ....+.+|..|+..++ +....|-+|+|||+|+.|+|
T Consensus 208 GEsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred ccHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 788899999999999877 799999999999888754432 3356677777777775 45678999999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
+|++ |+|..+++|+|+...|..|++.+-...... ..++ .+.+.+.++||+|.|
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~----------------------Geid---~eaivK~~d~f~gad 341 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH----------------------GEID---DEAILKLVDGFNGAD 341 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeecccccccc----------------------cccc---HHHHHHHHhccChHH
Confidence 9998 999999999999999998777654332110 1233 667778889999999
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 595 IAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 595 I~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
+.+.|.-+-..+.......+-.+++..++....
T Consensus 342 ~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 342 LRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred HhhhcccccccccchhhHHHhHHHHHHHHHHHH
Confidence 999996444333333445556667777766553
No 40
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.89 E-value=5.8e-21 Score=225.40 Aligned_cols=235 Identities=20% Similarity=0.266 Sum_probs=173.6
Q ss_pred chhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHH-hhchh
Q 006458 316 GAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGA-TANTK 394 (644)
Q Consensus 316 ~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~ 394 (644)
....+...|.+|+| +|...+...+...+.++...+ ++.|+|++.+...|...+.. .....
T Consensus 532 ~~~~i~~vv~~~tg------------ip~~~~~~~~~~~l~~l~~~l-------~~~viGQ~~ai~~l~~~i~~~~~gl~ 592 (857)
T PRK10865 532 TDAEIAEVLARWTG------------IPVSRMLESEREKLLRMEQEL-------HHRVIGQNEAVEAVSNAIRRSRAGLS 592 (857)
T ss_pred CHHHHHHHHHHHHC------------CCchhhhhhHHHHHHHHHHHh-------CCeEeCCHHHHHHHHHHHHHHHhccc
Confidence 35578899999999 899888888888888888888 89999999999998665543 33444
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--------------chhHHHHHHHHHHHHHhc
Q 006458 395 AHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--------------GPQAVTKIHQLFDWAKKS 457 (644)
Q Consensus 395 ~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--------------g~~~~~~l~~~f~~a~~~ 457 (644)
.++.|..++||+||||||||++|++|++.+ +.+++.++++.+... |.+. ...+..+.+.
T Consensus 593 ~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~----~g~l~~~v~~ 668 (857)
T PRK10865 593 DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE----GGYLTEAVRR 668 (857)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch----hHHHHHHHHh
Confidence 556676789999999999999999999987 457888888775321 1111 1234445556
Q ss_pred CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCC---------------
Q 006458 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRP--------------- 511 (644)
Q Consensus 458 ~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~--------------- 511 (644)
.+++||||||++++ + ..+++.|++.+++ +..+++||+|||..
T Consensus 669 ~p~~vLllDEieka---------~---~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~ 736 (857)
T PRK10865 669 RPYSVILLDEVEKA---------H---PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAH 736 (857)
T ss_pred CCCCeEEEeehhhC---------C---HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHH
Confidence 77899999999986 2 3345555554432 35678899999973
Q ss_pred ----------CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHH
Q 006458 512 ----------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILM 581 (644)
Q Consensus 512 ----------~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 581 (644)
..|.|+|++|+|.++.|.+++.++...|++.++....... .. .++.+ .++++.++
T Consensus 737 ~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl------------~~--~gi~l-~is~~al~ 801 (857)
T PRK10865 737 MKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRL------------EE--RGYEI-HISDEALK 801 (857)
T ss_pred HHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHH------------Hh--CCCcC-cCCHHHHH
Confidence 2467899999999999999999999999999998754321 10 11222 48999999
Q ss_pred HHHHHc--CCCcHHHHHHHHH
Q 006458 582 EAAAKT--EGFSGREIAKLMA 600 (644)
Q Consensus 582 ~LA~~t--~G~SgrdI~~L~~ 600 (644)
.|+... ..|..|.|..++.
T Consensus 802 ~L~~~gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 802 LLSENGYDPVYGARPLKRAIQ 822 (857)
T ss_pred HHHHcCCCccCChHHHHHHHH
Confidence 999863 1234688888773
No 41
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=3.6e-22 Score=233.81 Aligned_cols=236 Identities=24% Similarity=0.358 Sum_probs=180.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHh-hch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGAT-ANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~-~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.+..+|++|+|.+..++.|..++... ..+ ..+-.++.++|||||||||||+++++||+.++.+++.+++.++..
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 35678999999999999998866532 211 112256789999999999999999999999999999999887654
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCCH
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld~ 516 (644)
+.+.....+..+|..+.... |+||||||+|.+++.+.... ......+++.|+..++. ...+++||++||.++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENA-PSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcC-CcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 45566778899999988655 79999999999988765432 22335566777776653 3457889999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
++.+ ||+..++|+.|+.++|..||+.++..... ..+..+..++..|.||++.|
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-------------------------~~d~~l~~la~~t~G~~gad 384 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-------------------------AEDVDLDKLAEVTHGFVGAD 384 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------ccccCHHHHHHhCCCCCHHH
Confidence 9997 99999999999999999999977643211 23456899999999999999
Q ss_pred HHHHHHHHHHHHhC-------------------CCCCccCHHHHHHHHHHHH
Q 006458 595 IAKLMASVQAAVYG-------------------SENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 595 I~~L~~~~~aa~~~-------------------~~~~~lt~~~~~~al~~~~ 627 (644)
|..|+..+...+.. .....++.++|..++....
T Consensus 385 l~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ 436 (733)
T TIGR01243 385 LAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVE 436 (733)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcc
Confidence 99998533222110 0123567888888876544
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=3.2e-22 Score=196.69 Aligned_cols=192 Identities=29% Similarity=0.433 Sum_probs=131.7
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHH
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~ 445 (644)
.+.+|+++|||++++..+.-++... +..+.++.|+|||||||+|||+||+.||++++.+|..+++..+...+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa---~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~----- 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAA---KKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAG----- 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHH---HCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCH-----
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHH---HhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHH-----
Confidence 4567999999999999987766554 33345667899999999999999999999999999999886543321
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh------CC---------CCCCEEEEEEeCC
Q 006458 446 KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT------GD---------QSKDIVLALATNR 510 (644)
Q Consensus 446 ~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~------~~---------~~~~viiI~ttN~ 510 (644)
.+..++.. ..++.|||||||++| +...+.+|...+... +. .-.++.+|++|++
T Consensus 91 dl~~il~~---l~~~~ILFIDEIHRl---------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 91 DLAAILTN---LKEGDILFIDEIHRL---------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp HHHHHHHT-----TT-EEEECTCCC-----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred HHHHHHHh---cCCCcEEEEechhhc---------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 22333332 345789999999997 335566666665531 11 1246889999999
Q ss_pred CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 511 ~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
...++++|++||..+.++..++.++...|++.....+... ++++...+||+++.|
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~------------------------i~~~~~~~Ia~rsrG- 213 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE------------------------IDEDAAEEIARRSRG- 213 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E------------------------E-HHHHHHHHHCTTT-
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC------------------------cCHHHHHHHHHhcCC-
Confidence 9999999999999999999999999999999776554332 789999999999988
Q ss_pred cHHHHHHHHHHH
Q 006458 591 SGREIAKLMASV 602 (644)
Q Consensus 591 SgrdI~~L~~~~ 602 (644)
++|--..|+..+
T Consensus 214 tPRiAnrll~rv 225 (233)
T PF05496_consen 214 TPRIANRLLRRV 225 (233)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 788777777644
No 43
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.1e-22 Score=216.83 Aligned_cols=223 Identities=27% Similarity=0.390 Sum_probs=175.5
Q ss_pred CccccChHHHHHHHHHHHHhhc-----hhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC-CCchhHH
Q 006458 371 GDVILHPSLQKRIRQLSGATAN-----TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-PLGPQAV 444 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~-----~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~-~~g~~~~ 444 (644)
+++.|.......++.++..... ...+-.|++++|+|||||||||.+++++|++.+..++.+++..+. .+.+++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 4555555555565554433211 122346889999999999999999999999999999999999764 4888999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCCHHHhc-c
Q 006458 445 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDSAVAD-R 521 (644)
Q Consensus 445 ~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld~al~~-R 521 (644)
..++..|..+.+...|++|||||+|.+++++..... ..+.+...++..++. ...++++|.+||+|+.||++++| |
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgR 341 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGR 341 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCC
Confidence 999999999998877999999999999998877654 345555555555543 34789999999999999999998 9
Q ss_pred cceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHH
Q 006458 522 IDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMAS 601 (644)
Q Consensus 522 fd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~ 601 (644)
||..+.+..|+...|.+|++.+++++.. .++..+..+|..|.||.|+|+..||..
T Consensus 342 fd~ev~IgiP~~~~RldIl~~l~k~~~~-------------------------~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 342 FDREVEIGIPGSDGRLDILRVLTKKMNL-------------------------LSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred CcceeeecCCCchhHHHHHHHHHHhcCC-------------------------cchhhHHHHHHHccchhHHHHHHHHHH
Confidence 9999999999999999999999987531 357899999999999999999999954
Q ss_pred HHHHHhCCCCCccCHHHHHHHHHH
Q 006458 602 VQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 602 ~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
+...+... |.++|..+...
T Consensus 397 a~~~~~r~-----~~~~~~~A~~~ 415 (693)
T KOG0730|consen 397 ASLQATRR-----TLEIFQEALMG 415 (693)
T ss_pred HHHHHhhh-----hHHHHHHHHhc
Confidence 43322211 55556555443
No 44
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.7e-23 Score=218.36 Aligned_cols=211 Identities=26% Similarity=0.384 Sum_probs=173.8
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcC-CCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcC-------CCeEEEEecc
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSG-LDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSK-------RGLLLFIDEA 468 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~-~~~~~i~~~~l~~-~g~~~~~~l~~~f~~a~~~~-------~~~VL~IDEi 468 (644)
...+++|||||||||||.+|+.|.+.++ .+--++||.++.. |.++++.+++.+|..|...- .-.||++||+
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhh
Confidence 3447899999999999999999999986 5677889988765 88899999999998876411 1259999999
Q ss_pred chhhhccccCcC-CHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHH
Q 006458 469 DAFLCERNKTYM-SEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLY 543 (644)
Q Consensus 469 d~l~~~r~~~~~-~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~ 543 (644)
|.++..|++... +.-+..++|.||..++ +.-.|+++|+-||+.+.+|.+|+| ||...+++.+|++.-|.+|++.+
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 999998876554 4467889999999987 567899999999999999999998 99999999999999999999999
Q ss_pred HHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCC--------------
Q 006458 544 LDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGS-------------- 609 (644)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~-------------- 609 (644)
.++..... ..-+|.++.+||..|..|||++|..|+.+++..+..+
T Consensus 414 T~rMre~~---------------------~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~ 472 (744)
T KOG0741|consen 414 TKRMRENN---------------------KLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVA 472 (744)
T ss_pred hhhhhhcC---------------------CCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchh
Confidence 87754220 0124568999999999999999999998888776532
Q ss_pred -CCCccCHHHHHHHHHHHHHh
Q 006458 610 -ENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 610 -~~~~lt~~~~~~al~~~~~~ 629 (644)
+.-.+|.+||..+++.....
T Consensus 473 ~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 473 IENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred hhheeecHHHHHHHHHhcCcc
Confidence 12467899999998866543
No 45
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.4e-21 Score=191.73 Aligned_cols=216 Identities=19% Similarity=0.302 Sum_probs=173.9
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHH
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~ 445 (644)
.+..|+++||++.+++.+.-++.+. +..+..+.|+|||||||.|||+||..+|+++|.++...+|.-+...|
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AA---k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g----- 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAA---KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG----- 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHH---HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh-----
Confidence 4557999999999999998776554 45566778999999999999999999999999999988876664333
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC------C---------CCCCEEEEEEeCC
Q 006458 446 KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------D---------QSKDIVLALATNR 510 (644)
Q Consensus 446 ~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~------~---------~~~~viiI~ttN~ 510 (644)
.+-.++ ....+++|||||||+.|. .....+|...+..+. . +-..|.+|++|.+
T Consensus 93 DlaaiL---t~Le~~DVLFIDEIHrl~---------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 93 DLAAIL---TNLEEGDVLFIDEIHRLS---------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred hHHHHH---hcCCcCCeEEEehhhhcC---------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 222333 334568999999999983 344455555544321 1 3356899999999
Q ss_pred CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 511 ~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
...+..+|.+||..+.++..++.++...|+......+... ++++...+||+++.|
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~------------------------i~~~~a~eIA~rSRG- 215 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE------------------------IDEEAALEIARRSRG- 215 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC------------------------CChHHHHHHHHhccC-
Confidence 9999999999999999999999999999999988765433 889999999999988
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 591 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 591 SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
++|=-..|+..+...+.-.++..|+.+..++++...
T Consensus 216 TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 216 TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 888888899888877776777899999999888765
No 46
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.87 E-value=1.1e-19 Score=215.26 Aligned_cols=235 Identities=21% Similarity=0.269 Sum_probs=176.2
Q ss_pred chhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHH-Hhhchh
Q 006458 316 GAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSG-ATANTK 394 (644)
Q Consensus 316 ~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~-~~~~~~ 394 (644)
+...+...|.+|+| +|...+...+...|.++...+ ...|+|++.+...|...+. ......
T Consensus 529 ~~~~i~~v~~~~tg------------ip~~~~~~~e~~~l~~l~~~l-------~~~v~GQ~~av~~v~~~i~~~~~gl~ 589 (852)
T TIGR03346 529 TAEEIAEVVSRWTG------------IPVSKMLEGEREKLLHMEEVL-------HERVVGQDEAVEAVSDAIRRSRAGLS 589 (852)
T ss_pred CHHHHHHHHHHhcC------------CCcccccHHHHHHHHHHHHHh-------hcccCCChHHHHHHHHHHHHHhccCC
Confidence 45688899999999 888888888888888887777 6889999999999976544 334445
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--------------CchhHHHHHHHHHHHHHhc
Q 006458 395 AHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--------------LGPQAVTKIHQLFDWAKKS 457 (644)
Q Consensus 395 ~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--------------~g~~~~~~l~~~f~~a~~~ 457 (644)
.++.|..++||+||||||||++|++||..+ +.+++.++++.+.. .|.+..+ .+..+.+.
T Consensus 590 ~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g----~l~~~v~~ 665 (852)
T TIGR03346 590 DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGG----QLTEAVRR 665 (852)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccccc----HHHHHHHc
Confidence 566777889999999999999999999987 46889998877532 1111111 23344455
Q ss_pred CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC--------------
Q 006458 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRPG-------------- 512 (644)
Q Consensus 458 ~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~~-------------- 512 (644)
.|++|||||||+++ +..+++.|++.+++ ++.+++||+|||...
T Consensus 666 ~p~~vlllDeieka------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~ 733 (852)
T TIGR03346 666 KPYSVVLFDEVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEE 733 (852)
T ss_pred CCCcEEEEeccccC------------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHH
Confidence 67899999999985 34456666665532 257899999999722
Q ss_pred -----------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHH
Q 006458 513 -----------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILM 581 (644)
Q Consensus 513 -----------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 581 (644)
.|.|.|++|||.++.|.+++.++..+|+...+..+... +.. .++. -.++++.++
T Consensus 734 ~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~------------l~~--~~~~-l~i~~~a~~ 798 (852)
T TIGR03346 734 MREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR------------LAE--RKIT-LELSDAALD 798 (852)
T ss_pred HHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH------------HHH--CCCe-ecCCHHHHH
Confidence 26689999999999999999999999999998765422 111 1122 248999999
Q ss_pred HHHHHcC--CCcHHHHHHHHH
Q 006458 582 EAAAKTE--GFSGREIAKLMA 600 (644)
Q Consensus 582 ~LA~~t~--G~SgrdI~~L~~ 600 (644)
.|+.... .+..|.|.+++.
T Consensus 799 ~L~~~~~~~~~gaR~L~~~i~ 819 (852)
T TIGR03346 799 FLAEAGYDPVYGARPLKRAIQ 819 (852)
T ss_pred HHHHhCCCCCCCchhHHHHHH
Confidence 9999843 567799988874
No 47
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.87 E-value=8.9e-20 Score=214.82 Aligned_cols=235 Identities=17% Similarity=0.225 Sum_probs=176.7
Q ss_pred chhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHH-HHHHhhchh
Q 006458 316 GAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQ-LSGATANTK 394 (644)
Q Consensus 316 ~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~-l~~~~~~~~ 394 (644)
....+..+|.+|+| +|+..+...+...+.++...+ -..|+|++.+...|.. +.....+..
T Consensus 530 ~~~~i~~vv~~~tg------------ip~~~~~~~e~~~l~~l~~~L-------~~~v~GQ~~Av~~v~~~i~~~~~gl~ 590 (852)
T TIGR03345 530 DAQAVAEVVADWTG------------IPVGRMVRDEIEAVLSLPDRL-------AERVIGQDHALEAIAERIRTARAGLE 590 (852)
T ss_pred cHHHHHHHHHHHHC------------CCchhhchhHHHHHHHHHHHh-------cCeEcChHHHHHHHHHHHHHHhcCCC
Confidence 35688999999999 999888888888888888887 7889999999999966 444444455
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCC--------------CCchhHHHHHHHHHHHHHhc
Q 006458 395 AHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA--------------PLGPQAVTKIHQLFDWAKKS 457 (644)
Q Consensus 395 ~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~--------------~~g~~~~~~l~~~f~~a~~~ 457 (644)
.++.|...+||+||||||||++|++||..+ +..++.++++++. +.|.+..+ .+..+.+.
T Consensus 591 ~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g----~L~~~v~~ 666 (852)
T TIGR03345 591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG----VLTEAVRR 666 (852)
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc----hHHHHHHh
Confidence 566777789999999999999999999998 4578888877652 12222222 23334455
Q ss_pred CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC--------------
Q 006458 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRPG-------------- 512 (644)
Q Consensus 458 ~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~~-------------- 512 (644)
.|++||+|||||++ +..+++.|++.+++ ++.+++||+|||...
T Consensus 667 ~p~svvllDEieka------------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~ 734 (852)
T TIGR03345 667 KPYSVVLLDEVEKA------------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAP 734 (852)
T ss_pred CCCcEEEEechhhc------------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCc
Confidence 78999999999984 34566677766653 247899999999511
Q ss_pred ---------------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 513 ---------------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 513 ---------------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
.|.|+|++|++ +|.|.+++.++...|+...+..+..... .. .++.+ .+++
T Consensus 735 ~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~-----------~~--~gi~l-~i~d 799 (852)
T TIGR03345 735 DPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLK-----------EN--HGAEL-VYSE 799 (852)
T ss_pred chHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHH-----------Hh--cCceE-EECH
Confidence 26799999996 8999999999999999999987543211 00 01222 3899
Q ss_pred HHHHHHHHHcCC--CcHHHHHHHHH
Q 006458 578 DILMEAAAKTEG--FSGREIAKLMA 600 (644)
Q Consensus 578 ~~l~~LA~~t~G--~SgrdI~~L~~ 600 (644)
+.++.|+..+.+ |..|.|..++.
T Consensus 800 ~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 800 ALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHH
Confidence 999999998643 56788888874
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-20 Score=190.51 Aligned_cols=252 Identities=20% Similarity=0.254 Sum_probs=180.4
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccC------CCCccEEEecCCCCChHHHHHHHHHHcC---------CCeEEEeC
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHN------APFRNMLFYGPPGTGKTMAARELARKSG---------LDYALMTG 433 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~------~p~~~iLL~GppGtGKT~lAkaLA~~l~---------~~~~~i~~ 433 (644)
-|+.+|-..++++++-.++.........+ ..-+-+|||||||||||+|||+||+.+. ..++.+|+
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 37888989999999977554432221111 1124599999999999999999999983 34677787
Q ss_pred CCCCC-CchhHHHHHHHHHHHHHhc--CCCe--EEEEeccchhhhccccC---cCCHHHHHHHHHHHHHhC--CCCCCEE
Q 006458 434 GDVAP-LGPQAVTKIHQLFDWAKKS--KRGL--LLFIDEADAFLCERNKT---YMSEAQRSALNALLFRTG--DQSKDIV 503 (644)
Q Consensus 434 ~~l~~-~g~~~~~~l~~~f~~a~~~--~~~~--VL~IDEid~l~~~r~~~---~~~~~~~~~l~~lL~~~~--~~~~~vi 503 (644)
..+.. +.+++...+..+|+..... .+++ .|+|||++.|...|.+. ..+.+.-+++|.+|..++ ...+||+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 76654 7777777777777665431 2233 46799999998777432 223355679999999987 5778999
Q ss_pred EEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhh-ccCCCHHHHHH
Q 006458 504 LALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE-IKGLTDDILME 582 (644)
Q Consensus 504 iI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~ 582 (644)
|++|+|..+.+|.+|.+|-|.+.++.+|+...++.|++.++..+...+-.... .. .-++. ..+..+.....
T Consensus 300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~----~~----s~~~~~~i~~~~~~~~~ 371 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFH----QR----STGVKEFIKYQKALRNI 371 (423)
T ss_pred EEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeee----cc----chhhhHHhHhhHhHHHH
Confidence 99999999999999999999999999999999999999999987643111000 00 00111 11233444445
Q ss_pred HHHH-cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 583 AAAK-TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 583 LA~~-t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
+... +.|+|||-|++|--.+++..... ..+|.+.|..++-..+..+
T Consensus 372 ~~~~~~~gLSGRtlrkLP~Laha~y~~~--~~v~~~~fl~al~ea~~k~ 418 (423)
T KOG0744|consen 372 LIELSTVGLSGRTLRKLPLLAHAEYFRT--FTVDLSNFLLALLEAAKKL 418 (423)
T ss_pred HHHHhhcCCccchHhhhhHHHHHhccCC--CccChHHHHHHHHHHHHHH
Confidence 5544 48999999999988777765543 6889999988887777655
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.85 E-value=7.2e-20 Score=195.07 Aligned_cols=216 Identities=21% Similarity=0.291 Sum_probs=161.9
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHH
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~ 445 (644)
.+..|++++|++..+..+..++.... ..+.++.++|||||||||||++|+.+|+.++.++..+++..+... .
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~---~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~-----~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAK---KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP-----G 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHH---hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh-----H
Confidence 45579999999999999877664432 234566789999999999999999999999999888776544321 2
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh------CC---------CCCCEEEEEEeCC
Q 006458 446 KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT------GD---------QSKDIVLALATNR 510 (644)
Q Consensus 446 ~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~------~~---------~~~~viiI~ttN~ 510 (644)
.+..++.. ...++||||||+|.+.. .....+..++... +. ...++++|++||.
T Consensus 92 ~l~~~l~~---l~~~~vl~IDEi~~l~~---------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 92 DLAAILTN---LEEGDVLFIDEIHRLSP---------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred HHHHHHHh---cccCCEEEEecHhhcch---------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 23333332 34578999999999732 2233333333321 11 1235789999999
Q ss_pred CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 511 ~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
+..+++++.+||+.++.|++|+.+++..|++..+..... .++++.+..|+..+.|
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~------------------------~~~~~~~~~ia~~~~G- 214 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV------------------------EIDEEGALEIARRSRG- 214 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC------------------------CcCHHHHHHHHHHcCC-
Confidence 999999999999999999999999999999988776432 2789999999999987
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 591 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 591 SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
++|.+..++..+...+...+...+|.+++..+++..
T Consensus 215 ~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 215 TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 568888888766555544445789999999998664
No 50
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=2.3e-20 Score=194.58 Aligned_cols=172 Identities=24% Similarity=0.301 Sum_probs=125.9
Q ss_pred CCccccChHHHHHHHHHHHHhhchh---ccC----CCCccEEEecCCCCChHHHHHHHHHHcC-------CCeEEEeCCC
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTK---AHN----APFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMTGGD 435 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~---~~~----~p~~~iLL~GppGtGKT~lAkaLA~~l~-------~~~~~i~~~~ 435 (644)
+++++|.+.+++.|..++....... ..+ .+..++||+||||||||++|+++|+.+. .+++.+++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 5689999999999988765432211 111 2344699999999999999999998752 3578888766
Q ss_pred CCC-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006458 436 VAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-- 512 (644)
Q Consensus 436 l~~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~-- 512 (644)
+.. +.+........+|..+ .++||||||+|.|...++... ....+++.|+..+++...+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a----~ggVLfIDE~~~l~~~~~~~~---~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA----MGGVLFIDEAYYLYKPDNERD---YGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHc----cCCEEEEEccchhccCCCccc---hHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 543 3333334455555554 267999999999865433222 335667777777777778889988876421
Q ss_pred ---CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHh
Q 006458 513 ---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI 548 (644)
Q Consensus 513 ---~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~ 548 (644)
.++|+|.+||+.+|+|++|+.+++..|+..++.+..
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999998753
No 51
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=2.8e-20 Score=207.20 Aligned_cols=205 Identities=22% Similarity=0.244 Sum_probs=154.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
++.+.+|++|||++++++.|...+... ..+..+||+||+|||||++|+.||+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g-------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ-------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 467778999999999999887765422 23345799999999999999999999875
Q ss_pred ------------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHH
Q 006458 427 ------------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL 491 (644)
Q Consensus 427 ------------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~l 491 (644)
+++.++... ...+..++++.+.+.. ..++.|+||||+|.|. ...+|.|
T Consensus 82 ~sC~~I~aG~hpDviEIdAas-----~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~AaNAL 144 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAAS-----NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAFNAM 144 (700)
T ss_pred HHHHHHHcCCCCcceEecccc-----cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHHHHH
Confidence 222332221 1123445555554432 3457899999999972 3578999
Q ss_pred HHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhh
Q 006458 492 LFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 571 (644)
Q Consensus 492 L~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (644)
|+.+++.+.+++||++||.++.|.+.|+||| ..+.|..++.++....|+.++....+
T Consensus 145 LKTLEEPP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi---------------------- 201 (700)
T PRK12323 145 LKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGI---------------------- 201 (700)
T ss_pred HHhhccCCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCC----------------------
Confidence 9999999999999999999999999999999 99999999999999999988865321
Q ss_pred ccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 572 IKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 572 ~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
.++++.+..|+..++| +.|+...|+. ++..++. +.||.+++..+
T Consensus 202 --~~d~eAL~~IA~~A~G-s~RdALsLLd--Qaia~~~--~~It~~~V~~~ 245 (700)
T PRK12323 202 --AHEVNALRLLAQAAQG-SMRDALSLTD--QAIAYSA--GNVSEEAVRGM 245 (700)
T ss_pred --CCCHHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcc--CCcCHHHHHHH
Confidence 2788899999999977 7888888775 3333433 34655554443
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.85 E-value=9.3e-20 Score=192.16 Aligned_cols=212 Identities=20% Similarity=0.299 Sum_probs=154.6
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHH
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIH 448 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~ 448 (644)
+|++|||+++++..|..++...... ..++.+++||||||||||++++.+|+.++.++..+.+......+ .+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~-----~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPG-----DLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCch-----hHH
Confidence 5899999999999987766443222 33456899999999999999999999999888777654433221 222
Q ss_pred HHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC---------------CCCCCEEEEEEeCCCCC
Q 006458 449 QLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---------------DQSKDIVLALATNRPGD 513 (644)
Q Consensus 449 ~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~---------------~~~~~viiI~ttN~~~~ 513 (644)
..+. ....+.||||||++.+.. .....|..++.... ....++++|++||.+..
T Consensus 74 ~~l~---~~~~~~vl~iDEi~~l~~---------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 74 AILT---NLEEGDVLFIDEIHRLSP---------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGM 141 (305)
T ss_pred HHHH---hcccCCEEEEehHhhhCH---------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccc
Confidence 2222 234478999999999743 22223333332211 12234889999999999
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++++||..++.|++|+.+++..|++..+..... .++++.++.|+..+.| ++|
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~------------------------~~~~~al~~ia~~~~G-~pR 196 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV------------------------EIEPEAALEIARRSRG-TPR 196 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC------------------------CcCHHHHHHHHHHhCC-Ccc
Confidence 999999999999999999999999999988764321 2789999999999988 557
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
.+..++..+...+...+...+|.+++..++..
T Consensus 197 ~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 197 IANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred hHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 88788865543333334467999999999876
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=4.6e-20 Score=190.35 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=144.3
Q ss_pred CCccccChHHHHHHHHHHHHhhchh---ccC----CCCccEEEecCCCCChHHHHHHHHHHc-------CCCeEEEeCCC
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTK---AHN----APFRNMLFYGPPGTGKTMAARELARKS-------GLDYALMTGGD 435 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~---~~~----~p~~~iLL~GppGtGKT~lAkaLA~~l-------~~~~~~i~~~~ 435 (644)
+++++|.+.++..|+.+........ ..| ....|+||+||||||||++|+.+|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 6889999999999988766553321 111 233589999999999999999999875 23577777777
Q ss_pred CCC-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006458 436 VAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-- 512 (644)
Q Consensus 436 l~~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~-- 512 (644)
+.. +.++....+..+|..+. ++||||||+|.|..... .......++.++..++....++++|++++..+
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc----CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 644 44445566677776653 67999999999863211 12345678888888887778888888765422
Q ss_pred ---CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--
Q 006458 513 ---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-- 587 (644)
Q Consensus 513 ---~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-- 587 (644)
.++|++.+||+..|+|+.|+.+++..|++.++..... .++++.+..|+...
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~------------------------~l~~~a~~~l~~~~~~ 212 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREY------------------------KLTEEAKWKLREHLYK 212 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCC------------------------ccCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999876322 16667666664431
Q ss_pred -------CCCcHHHHHHHHH
Q 006458 588 -------EGFSGREIAKLMA 600 (644)
Q Consensus 588 -------~G~SgrdI~~L~~ 600 (644)
..-++|.+.+++.
T Consensus 213 ~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 213 VDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred HHhccCCCCchHHHHHHHHH
Confidence 1236788888774
No 54
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-20 Score=217.43 Aligned_cols=210 Identities=28% Similarity=0.458 Sum_probs=168.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhh-ch----hccCCCCccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATA-NT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGG 434 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~-~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~ 434 (644)
....+|++|-|.++++..++..+.... .+ ..+-.||+++|||||||||||+.|+++|..+. ..|+.-.|.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 444579999999999998877443322 21 22346889999999999999999999999883 344444565
Q ss_pred CC-CCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCC
Q 006458 435 DV-APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRP 511 (644)
Q Consensus 435 ~l-~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~ 511 (644)
+. ..+.++....+.-+|..|.+.. |+|+|+||||-|.+.|.... ...+..++..||..++ +..+.+++|++||++
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 54 4588899999999999999876 89999999999988875543 2234455666666654 356789999999999
Q ss_pred CCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006458 512 GDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 589 (644)
Q Consensus 512 ~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G 589 (644)
+.+||++++ |||..++|++|+.+.|..|+..+-.+... -++...+..||..|.|
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~------------------------~i~~~l~~~la~~t~g 472 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP------------------------PISRELLLWLAEETSG 472 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC------------------------CCCHHHHHHHHHhccc
Confidence 999999988 99999999999999999999988755321 2677899999999999
Q ss_pred CcHHHHHHHHH
Q 006458 590 FSGREIAKLMA 600 (644)
Q Consensus 590 ~SgrdI~~L~~ 600 (644)
|-|+||+.||.
T Consensus 473 y~gaDlkaLCT 483 (1080)
T KOG0732|consen 473 YGGADLKALCT 483 (1080)
T ss_pred cchHHHHHHHH
Confidence 99999999994
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=7.3e-20 Score=199.65 Aligned_cols=207 Identities=22% Similarity=0.242 Sum_probs=153.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++++...|...+.. +..+..+||+||||||||++|+.+|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 45677899999999999988665532 2222348999999999999999999998752
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.++... ..| ...++.+.+.+. ...++.|+||||+|.|. ...++.||..++
T Consensus 84 i~~g~~~dviEIdaas--~~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLKtLE 146 (484)
T PRK14956 84 ITKGISSDVLEIDAAS--NRG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLKTLE 146 (484)
T ss_pred HHccCCccceeechhh--ccc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHHHhh
Confidence 22222211 112 333444443333 23457899999999972 347888999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.+..+.+.+++|| ..+.|..++.++....++..+....+ .++
T Consensus 147 EPp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi------------------------~~e 201 (484)
T PRK14956 147 EPPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENV------------------------QYD 201 (484)
T ss_pred cCCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88999999999999999999999999 88999999999999888888765322 279
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++.+..|+..++| +.|+.-.++.. ...+. ++.||.+.+.+++.
T Consensus 202 ~eAL~~Ia~~S~G-d~RdAL~lLeq--~i~~~--~~~it~~~V~~~lg 244 (484)
T PRK14956 202 QEGLFWIAKKGDG-SVRDMLSFMEQ--AIVFT--DSKLTGVKIRKMIG 244 (484)
T ss_pred HHHHHHHHHHcCC-hHHHHHHHHHH--HHHhC--CCCcCHHHHHHHhC
Confidence 9999999999987 67776666642 22332 24688888877654
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=4.9e-20 Score=215.35 Aligned_cols=235 Identities=22% Similarity=0.298 Sum_probs=177.6
Q ss_pred chhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHH-hhchh
Q 006458 316 GAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGA-TANTK 394 (644)
Q Consensus 316 ~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~ 394 (644)
+...+..++.+|+| +||..+...+...+.++...+ -..|+|++.+++.|...+.. .....
T Consensus 418 ~~~~i~~~i~~~tg------------iP~~~~~~~~~~~l~~l~~~l-------~~~v~GQ~~ai~~l~~~i~~~~~g~~ 478 (731)
T TIGR02639 418 SVKDIENVVAKMAH------------IPVKTVSVDDREKLKNLEKNL-------KAKIFGQDEAIDSLVSSIKRSRAGLG 478 (731)
T ss_pred CHHHHHHHHHHHhC------------CChhhhhhHHHHHHHHHHHHH-------hcceeCcHHHHHHHHHHHHHHhcCCC
Confidence 34568899999999 899887777777888887777 78899999999998665443 33344
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC--------------CchhHHHHHHHHHHHHHhcCCC
Q 006458 395 AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--------------LGPQAVTKIHQLFDWAKKSKRG 460 (644)
Q Consensus 395 ~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~--------------~g~~~~~~l~~~f~~a~~~~~~ 460 (644)
.++.|..++||+||||||||++|++||+.++.+++.++++++.. .|.+..+ .+..+.+..|+
T Consensus 479 ~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~----~l~~~~~~~p~ 554 (731)
T TIGR02639 479 NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGG----LLTEAVRKHPH 554 (731)
T ss_pred CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhh----HHHHHHHhCCC
Confidence 45667778999999999999999999999999999999887532 1222222 23345556779
Q ss_pred eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC-----------------
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRPG----------------- 512 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~~----------------- 512 (644)
+||||||+|++ +..+++.|++.+++ +..+++||+|||...
T Consensus 555 ~VvllDEieka------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~ 622 (731)
T TIGR02639 555 CVLLLDEIEKA------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVES 622 (731)
T ss_pred eEEEEechhhc------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHH
Confidence 99999999986 23456666665542 356899999998631
Q ss_pred --------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHH
Q 006458 513 --------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAA 584 (644)
Q Consensus 513 --------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA 584 (644)
.|.|+|++|||.+|.|.+++.++...|++..+.++...... .++.+ .++++.++.|+
T Consensus 623 ~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~--------------~~~~l-~i~~~a~~~La 687 (731)
T TIGR02639 623 KSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE--------------KNIKL-ELTDDAKKYLA 687 (731)
T ss_pred HHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh--------------CCCeE-EeCHHHHHHHH
Confidence 36889999999999999999999999999999876432111 11222 38999999999
Q ss_pred HH--cCCCcHHHHHHHHH
Q 006458 585 AK--TEGFSGREIAKLMA 600 (644)
Q Consensus 585 ~~--t~G~SgrdI~~L~~ 600 (644)
.. ...|..|.|..++.
T Consensus 688 ~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 688 EKGYDEEFGARPLARVIQ 705 (731)
T ss_pred HhCCCcccCchHHHHHHH
Confidence 86 34566788888874
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.85 E-value=4.5e-20 Score=213.56 Aligned_cols=237 Identities=18% Similarity=0.245 Sum_probs=174.7
Q ss_pred hhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHH-Hhhchhc
Q 006458 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSG-ATANTKA 395 (644)
Q Consensus 317 ~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~-~~~~~~~ 395 (644)
...+...+.+|+| +|...+...+...+.++...+ -..|+|++.+++.|...+. ...+...
T Consensus 423 ~~~i~~v~~~~tg------------ip~~~~~~~~~~~l~~l~~~L-------~~~ViGQ~~ai~~l~~~i~~~~~gl~~ 483 (758)
T PRK11034 423 VADIESVVARIAR------------IPEKSVSQSDRDTLKNLGDRL-------KMLVFGQDKAIEALTEAIKMSRAGLGH 483 (758)
T ss_pred hhhHHHHHHHHhC------------CChhhhhhhHHHHHHHHHHHh-------cceEeCcHHHHHHHHHHHHHHhccccC
Confidence 4578889999999 787777666777777777776 6789999999999977554 3344445
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-------Cchh--HH-HHHHHHHHHHHhcCCCeEEEE
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-------LGPQ--AV-TKIHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-------~g~~--~~-~~l~~~f~~a~~~~~~~VL~I 465 (644)
++.|..++||+||||||||++|+.||..++.+++.++|+++.. +|.. .. ......+..+.+..+++||||
T Consensus 484 ~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlll 563 (758)
T PRK11034 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLL 563 (758)
T ss_pred CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEe
Confidence 5677789999999999999999999999999999999887632 1100 00 011123444555567899999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCC-----------------------
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRP----------------------- 511 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~----------------------- 511 (644)
||||++ +..+++.|++.+++ +..+++||+|||..
T Consensus 564 DEieka------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~ 631 (758)
T PRK11034 564 DEIEKA------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEE 631 (758)
T ss_pred ccHhhh------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHH
Confidence 999996 34466666665542 34689999999942
Q ss_pred --CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--
Q 006458 512 --GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-- 587 (644)
Q Consensus 512 --~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-- 587 (644)
..|.|+|++|+|.+|.|++++.++...|+..++.++... +... ++.+ .+++..++.|+...
T Consensus 632 ~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~------------l~~~--~i~l-~~~~~~~~~l~~~~~~ 696 (758)
T PRK11034 632 IKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQ------------LDQK--GVSL-EVSQEARDWLAEKGYD 696 (758)
T ss_pred HHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHH------------HHHC--CCCc-eECHHHHHHHHHhCCC
Confidence 237799999999999999999999999999999876433 2211 2222 38999999999763
Q ss_pred CCCcHHHHHHHH
Q 006458 588 EGFSGREIAKLM 599 (644)
Q Consensus 588 ~G~SgrdI~~L~ 599 (644)
..|..|.|..++
T Consensus 697 ~~~GAR~l~r~i 708 (758)
T PRK11034 697 RAMGARPMARVI 708 (758)
T ss_pred CCCCCchHHHHH
Confidence 344567777776
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=5.3e-20 Score=207.33 Aligned_cols=205 Identities=20% Similarity=0.239 Sum_probs=152.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
++.+.+|++|||++++++.|...+. .+.....+|||||+|||||++++.||+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 4677789999999999998876543 22333457999999999999999999998642
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.++..+ ......++.+++.+.. ..++.||||||+|.|. ...+|.||+.++
T Consensus 82 I~~G~h~DviEIDAas-----~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLKtLE 144 (830)
T PRK07003 82 IDEGRFVDYVEMDAAS-----NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLKTLE 144 (830)
T ss_pred HhcCCCceEEEecccc-----cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHHHHH
Confidence 33332221 1123345555555432 2346899999999972 246888999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++||.+..|.+.|+||| ..|.|..++.++...+|+..+....+ .++
T Consensus 145 EPP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI------------------------~id 199 (830)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERI------------------------AFE 199 (830)
T ss_pred hcCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88899999999999999999999999 99999999999999999998876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
++.+..|++.++| +.|+..+|+. ++..++. +.||.+.+..+
T Consensus 200 ~eAL~lIA~~A~G-smRdALsLLd--QAia~~~--~~It~~~V~~~ 240 (830)
T PRK07003 200 PQALRLLARAAQG-SMRDALSLTD--QAIAYSA--NEVTETAVSGM 240 (830)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcc--CCcCHHHHHHH
Confidence 9999999999988 6777777654 3334443 34555544443
No 59
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.84 E-value=1.6e-18 Score=202.08 Aligned_cols=269 Identities=19% Similarity=0.248 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHhhchhcc
Q 006458 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAH 396 (644)
Q Consensus 317 ~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~ 396 (644)
..|+..|+++++. +||... .....++......| =.+.+|.+.++++|..++........
T Consensus 288 ~~~~~~yl~~~~~------------~pw~~~-~~~~~~~~~~~~~l-------~~~~~g~~~vK~~i~~~l~~~~~~~~- 346 (784)
T PRK10787 288 ATVVRGYIDWMVQ------------VPWNAR-SKVKKDLRQAQEIL-------DTDHYGLERVKDRILEYLAVQSRVNK- 346 (784)
T ss_pred HHHHHHHHHHHHh------------CCCCCC-CcccccHHHHHHHh-------hhhccCHHHHHHHHHHHHHHHHhccc-
Confidence 5699999999999 999543 33444555544444 34588999999999765554332221
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----------CchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------LGPQAVTKIHQLFDWAKKSKRGLLLFID 466 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----------~g~~~~~~l~~~f~~a~~~~~~~VL~ID 466 (644)
.....++|+||||||||++++.+|..++.+++.++.+.+.. +.+...+.+...+..+... ..|||||
T Consensus 347 -~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~--~~villD 423 (784)
T PRK10787 347 -IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVK--NPLFLLD 423 (784)
T ss_pred -CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCC--CCEEEEE
Confidence 12235999999999999999999999999999998666422 2222223333334333322 3589999
Q ss_pred ccchhhhccccCcCCHHHHHHHHHHHHH------------hCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHH
Q 006458 467 EADAFLCERNKTYMSEAQRSALNALLFR------------TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQE 534 (644)
Q Consensus 467 Eid~l~~~r~~~~~~~~~~~~l~~lL~~------------~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~ 534 (644)
|+|++....... ....|..++.. +..+.++++||+|+|.. .++++|++|| .+|.|+.++.+
T Consensus 424 Eidk~~~~~~g~-----~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~e 496 (784)
T PRK10787 424 EIDKMSSDMRGD-----PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRM-EVIRLSGYTED 496 (784)
T ss_pred ChhhcccccCCC-----HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcce-eeeecCCCCHH
Confidence 999986542211 12233333321 11244789999999987 5999999999 78999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc-CCCcHHHHHHHH----HHHHHHH-hC
Q 006458 535 ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-EGFSGREIAKLM----ASVQAAV-YG 608 (644)
Q Consensus 535 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-~G~SgrdI~~L~----~~~~aa~-~~ 608 (644)
+...|++.++........... .. .-.++++.+..|+..+ ..+..|.|..++ ....... .+
T Consensus 497 ek~~Ia~~~L~~k~~~~~~l~-------------~~-~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~ 562 (784)
T PRK10787 497 EKLNIAKRHLLPKQIERNALK-------------KG-ELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLD 562 (784)
T ss_pred HHHHHHHHhhhHHHHHHhCCC-------------CC-eEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 999999999963222111000 00 1138899999998654 344456666655 3222211 12
Q ss_pred -C-CCCccCHHHHHHHHHHHHHhH
Q 006458 609 -S-ENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 609 -~-~~~~lt~~~~~~al~~~~~~~ 630 (644)
. ....||.+++.+.+......+
T Consensus 563 ~~~~~v~v~~~~~~~~lg~~~~~~ 586 (784)
T PRK10787 563 KSLKHIEINGDNLHDYLGVQRFDY 586 (784)
T ss_pred CCCceeeecHHHHHHHhCCCcccc
Confidence 1 225789999998887665544
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.2e-19 Score=189.61 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=158.2
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHH
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~ 445 (644)
.+.+|+++|||.++...-.-+.+..... ...+++||||||||||++|+.||...+.+|..++... .++.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~-----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAG-----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcC-----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------ccHH
Confidence 3567999999999885544343333222 3357999999999999999999999999999998644 3467
Q ss_pred HHHHHHHHHHhcC---CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCCHHHhc
Q 006458 446 KIHQLFDWAKKSK---RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLDSAVAD 520 (644)
Q Consensus 446 ~l~~~f~~a~~~~---~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt--N~~~~ld~al~~ 520 (644)
.++.+++.++... +..|||||||++| +...+.+|..++ ..+.+++|++| |..-.++++|+|
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRf---------nK~QQD~lLp~v-----E~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRF---------NKAQQDALLPHV-----ENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhc---------Chhhhhhhhhhh-----cCCeEEEEeccCCCCCeeecHHHhh
Confidence 8888998886543 3689999999997 223444444444 56778888855 556689999999
Q ss_pred ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHH
Q 006458 521 RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 521 Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
|+ .++.|.+.+.++...+++..+.......+. ....++++.++.|+..++| |.+.+++
T Consensus 154 R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~-----------------~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 154 RA-RVFELKPLSSEDIKKLLKRALLDEERGLGG-----------------QIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCc-----------------ccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 99 999999999999999999855433211110 0123789999999999877 6677776
Q ss_pred HHHHHHhCC-CCCccCHHHHHHHHHHHHH
Q 006458 601 SVQAAVYGS-ENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 601 ~~~aa~~~~-~~~~lt~~~~~~al~~~~~ 628 (644)
.+..++... .+..++.+++.+++.....
T Consensus 212 ~LE~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 212 LLELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 666555433 2335668888888877654
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=2.8e-19 Score=199.83 Aligned_cols=207 Identities=22% Similarity=0.270 Sum_probs=158.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|||++.+.+.|...+. .+..+..+||+||||||||++|+.+|+.+++
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~-------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE-------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 4567789999999999888866553 3334456899999999999999999999865
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 427 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 427 -------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+++.+++++- . ....++.+...+. ...++.|+||||+|.|. ...++.|+..++
T Consensus 81 I~~g~hpDviEIDAAs~--~---~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALLKtLE 143 (702)
T PRK14960 81 VNEGRFIDLIEIDAASR--T---KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALLKTLE 143 (702)
T ss_pred HhcCCCCceEEeccccc--C---CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHh
Confidence 2333333221 1 2334555554432 22457899999999872 236788898898
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.++.||++|+.+..+.+.+++|| .++.|.+++.++....+...+.+..+ .++
T Consensus 144 EPP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI------------------------~id 198 (702)
T PRK14960 144 EPPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQI------------------------AAD 198 (702)
T ss_pred cCCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88889999999999999999999999 99999999999999999999876432 288
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++.+..|+..+.| +.|++..++. ++.+++ .+.||.+++..++.
T Consensus 199 ~eAL~~IA~~S~G-dLRdALnLLD--QaIayg--~g~IT~edV~~lLG 241 (702)
T PRK14960 199 QDAIWQIAESAQG-SLRDALSLTD--QAIAYG--QGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHhc
Confidence 9999999999976 8888888875 444564 46788888877654
No 62
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=2.1e-19 Score=200.68 Aligned_cols=208 Identities=20% Similarity=0.190 Sum_probs=158.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++.+.+.|...+.. +..+..+||+||||||||++|+.+|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 56777899999999999988765532 2233458999999999999999999998642
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.++.+. .. ....++.+.+.+. ...++.|+||||+|.|. ...+|.||..++
T Consensus 82 i~~g~~~d~~eidaas--~~---~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk~LE 144 (509)
T PRK14958 82 IDEGRFPDLFEVDAAS--RT---KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLKTLE 144 (509)
T ss_pred HhcCCCceEEEEcccc--cC---CHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHHHHh
Confidence 34444321 12 2334455554433 23456899999999972 346889999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.+..+.+.+++|| ..++|..++..+....++..+.+... .++
T Consensus 145 epp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi------------------------~~~ 199 (509)
T PRK14958 145 EPPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENV------------------------EFE 199 (509)
T ss_pred ccCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88899999999999999999999999 89999999999999988888876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
++.+..|+..+.| +.|++..++. ++++|+ .+.||.+++..++..
T Consensus 200 ~~al~~ia~~s~G-slR~al~lLd--q~ia~~--~~~It~~~V~~~lg~ 243 (509)
T PRK14958 200 NAALDLLARAANG-SVRDALSLLD--QSIAYG--NGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHH--HHHhcC--CCCcCHHHHHHHHCC
Confidence 8999999999866 8888888886 345564 367888888776543
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=5.3e-19 Score=195.57 Aligned_cols=208 Identities=22% Similarity=0.273 Sum_probs=151.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|||++++...|...+. .+..+.++|||||||||||++|+.+|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~-------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~ 79 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK-------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRS 79 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHH
Confidence 4567789999999999888766443 2234456899999999999999999999864
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 427 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 427 -------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+++.++.+. ..| ...++.+.+.+.. ...+.||||||+|.|. ...++.|+..++
T Consensus 80 i~~g~~~dv~el~aa~--~~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk~LE 142 (472)
T PRK14962 80 IDEGTFMDVIELDAAS--NRG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLKTLE 142 (472)
T ss_pred HhcCCCCccEEEeCcc--cCC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHHHHH
Confidence 344444321 122 2334444444432 2346799999999972 345778888888
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
..+.++++|++|+.+..+++++.+|| .++.|.+|+.++...+++..+..... .++
T Consensus 143 ~p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi------------------------~i~ 197 (472)
T PRK14962 143 EPPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGI------------------------EID 197 (472)
T ss_pred hCCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88888999998888889999999999 79999999999999999988865322 289
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
++.+..|+..+.| +.|.+.+++..+ +.+.. ..||.+++..++..
T Consensus 198 ~eal~~Ia~~s~G-dlR~aln~Le~l--~~~~~--~~It~e~V~~~l~~ 241 (472)
T PRK14962 198 REALSFIAKRASG-GLRDALTMLEQV--WKFSE--GKITLETVHEALGL 241 (472)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHH--HHhcC--CCCCHHHHHHHHcC
Confidence 9999999998866 555555554422 22322 34999999888753
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=5.3e-19 Score=200.15 Aligned_cols=207 Identities=21% Similarity=0.231 Sum_probs=155.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++.+...|...+.. +..+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~-------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL-------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 45667899999999999988765532 2222347999999999999999999998653
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.+++.. .. .+..++.+.+.+. ...++.|+||||+|.|. ...+|.||+.++
T Consensus 82 i~~g~~~D~ieidaas--~~---~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLKtLE 144 (647)
T PRK07994 82 IEQGRFVDLIEIDAAS--RT---KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLE 144 (647)
T ss_pred HHcCCCCCceeecccc--cC---CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHHHHH
Confidence 23333221 11 2334444444433 23457899999999972 357999999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.+..+.+.|++|| ..++|..++.++....|...+....+ .++
T Consensus 145 EPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i------------------------~~e 199 (647)
T PRK07994 145 EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQI------------------------PFE 199 (647)
T ss_pred cCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 99999999999999999999999999 99999999999999999988865321 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
+..+..|+..+.| +.|+...++. ++.+++ ++.||.+++...+.
T Consensus 200 ~~aL~~Ia~~s~G-s~R~Al~lld--qaia~~--~~~it~~~v~~~lg 242 (647)
T PRK07994 200 PRALQLLARAADG-SMRDALSLTD--QAIASG--NGQVTTDDVSAMLG 242 (647)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHc
Confidence 8999999999977 7788888875 333343 24577777776554
No 65
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=4.1e-19 Score=185.17 Aligned_cols=199 Identities=23% Similarity=0.279 Sum_probs=143.9
Q ss_pred CccccChHHHHHHHHHHHHhhchh---cc----CCCCccEEEecCCCCChHHHHHHHHHHcC-------CCeEEEeCCCC
Q 006458 371 GDVILHPSLQKRIRQLSGATANTK---AH----NAPFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMTGGDV 436 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~---~~----~~p~~~iLL~GppGtGKT~lAkaLA~~l~-------~~~~~i~~~~l 436 (644)
.+++|.+++++.|..+........ .. ..|..++||+||||||||++|+++|+.+. .+++.+++.++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 479999999999988766543221 11 22445899999999999999999988762 36888887666
Q ss_pred CC-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC--C-
Q 006458 437 AP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP--G- 512 (644)
Q Consensus 437 ~~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~--~- 512 (644)
.. +.+.....+..+|..+. ++||||||++.|.+.++... ....+++.|+..++....+++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~~~---~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNERD---YGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCccc---hHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 43 33344445666666653 68999999999864432222 34556777788887777889999887642 2
Q ss_pred --CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH----
Q 006458 513 --DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---- 586 (644)
Q Consensus 513 --~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~---- 586 (644)
.++|+|.+||+..|+||+|+.+++..|++.++.+.... ++++.+..+..+
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~------------------------l~~~a~~~L~~~l~~~ 230 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYR------------------------FSAEAEEAFADYIALR 230 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccc------------------------cCHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999874321 556666666554
Q ss_pred ---cCCCcHHHHHHHHH
Q 006458 587 ---TEGFSGREIAKLMA 600 (644)
Q Consensus 587 ---t~G~SgrdI~~L~~ 600 (644)
..--++|++.+++.
T Consensus 231 ~~~~~~GN~R~lrn~ve 247 (284)
T TIGR02880 231 RTQPHFANARSIRNAID 247 (284)
T ss_pred CCCCCCChHHHHHHHHH
Confidence 12225899999883
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=99.82 E-value=5.2e-19 Score=187.74 Aligned_cols=206 Identities=19% Similarity=0.230 Sum_probs=146.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~~l~~ 438 (644)
.+.+.+|++++|++++...|+.++.. ...+|+|||||||||||++|+++|+.+. ..++.++.++..+
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~ 77 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD--------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG 77 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc
Confidence 46777899999999999888766432 1224699999999999999999999973 2355666654422
Q ss_pred CchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld 515 (644)
.+....+...|.... ....+.||||||+|.|. ... .+.|+..++..+..+.||++||....+.
T Consensus 78 --~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt---------~~a---q~aL~~~lE~~~~~t~~il~~n~~~~i~ 143 (319)
T PLN03025 78 --IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT---------SGA---QQALRRTMEIYSNTTRFALACNTSSKII 143 (319)
T ss_pred --HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC---------HHH---HHHHHHHHhcccCCceEEEEeCCccccc
Confidence 222222211121111 01236799999999973 223 3444555555566778999999999999
Q ss_pred HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 516 ~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+++++|+ .++.|++|+.++...+++..+.+... .++++.+..|+..+.| |+
T Consensus 144 ~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi------------------------~i~~~~l~~i~~~~~g----Dl 194 (319)
T PLN03025 144 EPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKV------------------------PYVPEGLEAIIFTADG----DM 194 (319)
T ss_pred hhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC----CH
Confidence 9999999 79999999999999999988876432 2789999999988755 77
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 596 AKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 596 ~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
+.++..++.+..+ ...+|.+++.++
T Consensus 195 R~aln~Lq~~~~~--~~~i~~~~v~~~ 219 (319)
T PLN03025 195 RQALNNLQATHSG--FGFVNQENVFKV 219 (319)
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHH
Confidence 7777777765543 346777777664
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=9.9e-19 Score=194.16 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=159.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCe---------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY--------------- 428 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~--------------- 428 (644)
.+.+.+|+++||++.+...|...+. .+..+.++||+||||||||++|+.+|+.+++..
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~-------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~ 86 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL-------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT 86 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh
Confidence 4677789999999999988866432 233446799999999999999999999986521
Q ss_pred -------------EEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHH
Q 006458 429 -------------ALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL 492 (644)
Q Consensus 429 -------------~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL 492 (644)
+.++.. ...+...++.+++.+... .++.|+||||+|.|. ...++.|+
T Consensus 87 ~C~~i~~~~h~Dv~eidaa-----s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naLL 149 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAA-----SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNALL 149 (507)
T ss_pred HHHHHhcCCCCcEEEeecc-----CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHHH
Confidence 111111 112345566666666432 346799999999872 34688888
Q ss_pred HHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhc
Q 006458 493 FRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572 (644)
Q Consensus 493 ~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (644)
..+++.+..++||++|+.++.+.+.+.+|| ..++|..++.++...+++..+.+...
T Consensus 150 k~LEepp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi----------------------- 205 (507)
T PRK06645 150 KTLEEPPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENL----------------------- 205 (507)
T ss_pred HHHhhcCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCC-----------------------
Confidence 888888889999999999999999999999 88999999999999999999976432
Q ss_pred cCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCC-CCCccCHHHHHHHHHH
Q 006458 573 KGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGS-ENCVLDPSLFREVVDY 625 (644)
Q Consensus 573 ~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~-~~~~lt~~~~~~al~~ 625 (644)
.++++.+..|+..+.| +.|++..++.. ++.++. .+..||.++++.++..
T Consensus 206 -~ie~eAL~~Ia~~s~G-slR~al~~Ldk--ai~~~~~~~~~It~~~V~~llg~ 255 (507)
T PRK06645 206 -KTDIEALRIIAYKSEG-SARDAVSILDQ--AASMSAKSDNIISPQVINQMLGL 255 (507)
T ss_pred -CCCHHHHHHHHHHcCC-CHHHHHHHHHH--HHHhhccCCCCcCHHHHHHHHCC
Confidence 2788999999999977 88888888763 333433 3457888888877543
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1e-18 Score=200.40 Aligned_cols=187 Identities=22% Similarity=0.231 Sum_probs=142.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCe---------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY--------------- 428 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~--------------- 428 (644)
.+.+.+|++|||++.++..|..++.. +..+..+||+||||||||++|+.||+.+++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~-------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ-------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 45667899999999999988765432 22233469999999999999999999987541
Q ss_pred ---------EEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 429 ---------ALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 429 ---------~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+.+++.+ ..+ ...++.+...+. ...++.|+||||+|.| ....+|.||+.++
T Consensus 82 i~~g~~~DviEidAas--~~k---VDdIReLie~v~~~P~~gk~KViIIDEAh~L------------T~eAqNALLKtLE 144 (944)
T PRK14949 82 IAQGRFVDLIEVDAAS--RTK---VDDTRELLDNVQYRPSRGRFKVYLIDEVHML------------SRSSFNALLKTLE 144 (944)
T ss_pred HhcCCCceEEEecccc--ccC---HHHHHHHHHHHHhhhhcCCcEEEEEechHhc------------CHHHHHHHHHHHh
Confidence 1111110 112 233444443332 2245689999999997 2557899999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.+..|.+.|++|| .++.|.+++.++....|+..+....+ .++
T Consensus 145 EPP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI------------------------~~e 199 (944)
T PRK14949 145 EPPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQL------------------------PFE 199 (944)
T ss_pred ccCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 99999999999999999999999999 99999999999999999888865321 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
++.+..|+..+.| +.|++..++.
T Consensus 200 deAL~lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 200 AEALTLLAKAANG-SMRDALSLTD 222 (944)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 8999999999977 7888888875
No 69
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=2.5e-19 Score=164.08 Aligned_cols=127 Identities=35% Similarity=0.566 Sum_probs=108.6
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC-CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCC
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 481 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~-~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~ 481 (644)
||||||||||||++++.+|+.++.+++.++++.+. .+.......+..+|..+.....++||||||+|.++... .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 69999999999999999999999999999999986 46778888999999998876657999999999998887 33345
Q ss_pred HHHHHHHHHHHHHhCCCC---CCEEEEEEeCCCCCCCHHHh-cccceeEecCC
Q 006458 482 EAQRSALNALLFRTGDQS---KDIVLALATNRPGDLDSAVA-DRIDEVLEFPL 530 (644)
Q Consensus 482 ~~~~~~l~~lL~~~~~~~---~~viiI~ttN~~~~ld~al~-~Rfd~~i~~~~ 530 (644)
......++.|+..++... .+++||+|||.++.+++.++ +||+..|+||+
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 566777777777776433 56999999999999999999 99999999874
No 70
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.81 E-value=4.7e-19 Score=178.99 Aligned_cols=215 Identities=18% Similarity=0.231 Sum_probs=154.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC------CeEEEeCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL------DYALMTGGDVA 437 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~------~~~~i~~~~l~ 437 (644)
.+.+.+|++++|++.++..|..-+.. +...++|||||||||||++|+++|+++.. .+...+.++..
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 46677899999999999998654322 12347999999999999999999999865 23444555544
Q ss_pred CCc--hhHHHHHHHHHHHH-----HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006458 438 PLG--PQAVTKIHQLFDWA-----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 510 (644)
Q Consensus 438 ~~g--~~~~~~l~~~f~~a-----~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~ 510 (644)
+.. .+.......+.... ..+.++.|++|||+|.| .....+.|...+++.+..++||+.||.
T Consensus 101 Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm------------tsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 101 GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM------------TSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh------------hHHHHHHHHHHHhccccceEEEEEcCC
Confidence 322 11111111111111 11334579999999997 345677777778888999999999999
Q ss_pred CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 511 ~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
++.+...+.+|| ..+.|+....+.....|+.++.+..+. ++++.++.|+..++|
T Consensus 169 lsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~------------------------~d~~al~~I~~~S~G- 222 (346)
T KOG0989|consen 169 LSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVD------------------------IDDDALKLIAKISDG- 222 (346)
T ss_pred hhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCC------------------------CCHHHHHHHHHHcCC-
Confidence 999999999999 889999999999999999998875433 899999999999876
Q ss_pred cHHHHHHHHHHHHHHHhCCC-----------CCccCHHHHHHHHHHHH
Q 006458 591 SGREIAKLMASVQAAVYGSE-----------NCVLDPSLFREVVDYKV 627 (644)
Q Consensus 591 SgrdI~~L~~~~~aa~~~~~-----------~~~lt~~~~~~al~~~~ 627 (644)
||+..+..+|.++.... .+++..+.+...++...
T Consensus 223 ---dLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~ 267 (346)
T KOG0989|consen 223 ---DLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELAL 267 (346)
T ss_pred ---cHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHH
Confidence 67666666666655221 13555555555555544
No 71
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.1e-18 Score=197.11 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=155.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++.+...|..++... ..+..+|||||+|||||++|+.||+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~-------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ-------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 466778999999999999887765432 223457999999999999999999998641
Q ss_pred -------------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHH
Q 006458 428 -------------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL 491 (644)
Q Consensus 428 -------------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~l 491 (644)
|+.++... ...+..++.+.+.+.. ..++.|+||||+|.|. ...+|.|
T Consensus 82 ~~C~~i~~g~h~D~~eldaas-----~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~NaL 144 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAAS-----NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAFNAM 144 (618)
T ss_pred HHHHHHHcCCCCceeecCccc-----ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHHHHH
Confidence 22222211 1123345555554432 2346799999999972 3458899
Q ss_pred HHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhh
Q 006458 492 LFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 571 (644)
Q Consensus 492 L~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (644)
|..+++.+..++||++|+.+..+.+.+++|| .+++|..++.++....|+..+.+..+
T Consensus 145 LKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi---------------------- 201 (618)
T PRK14951 145 LKTLEEPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENV---------------------- 201 (618)
T ss_pred HHhcccCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCC----------------------
Confidence 9999998899999999999999999999999 99999999999999999988876432
Q ss_pred ccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 572 IKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 572 ~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
.++++.+..|+..+.| +.|++..++. ++..++ .+.||.++++.++.
T Consensus 202 --~ie~~AL~~La~~s~G-slR~al~lLd--q~ia~~--~~~It~~~V~~~Lg 247 (618)
T PRK14951 202 --PAEPQALRLLARAARG-SMRDALSLTD--QAIAFG--SGQLQEAAVRQMLG 247 (618)
T ss_pred --CCCHHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHc
Confidence 2788999999999877 7788877764 444554 35688777776653
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=1.1e-18 Score=196.67 Aligned_cols=209 Identities=20% Similarity=0.230 Sum_probs=159.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
++.+.+|++|||++.++..|...+.. +..+..+||+||+|||||++|+.||+.+++.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 56777899999999999988776542 3344568999999999999999999987643
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.++... ......++.++..+.. ..++.||||||+|.|. ...++.||+.++
T Consensus 82 i~~g~~~DvlEidaAs-----~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLKtLE 144 (709)
T PRK08691 82 IDAGRYVDLLEIDAAS-----NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLKTLE 144 (709)
T ss_pred HhccCccceEEEeccc-----cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHHHHH
Confidence 12222111 1223455556554432 2446899999999862 346788999998
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++||.+..+.+.+++|| ..+.|+.++.++...+|...+....+ .++
T Consensus 145 EPp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi------------------------~id 199 (709)
T PRK08691 145 EPPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKI------------------------AYE 199 (709)
T ss_pred hCCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCC------------------------CcC
Confidence 88889999999999999999999999 89999999999999999988876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
++.+..|++.+.| +.|++..++. +++.++ .+.|+.+++..++...
T Consensus 200 ~eAL~~Ia~~A~G-slRdAlnLLD--qaia~g--~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 200 PPALQLLGRAAAG-SMRDALSLLD--QAIALG--SGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHccc
Confidence 9999999999966 8888888886 344454 3578888888776544
No 73
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.5e-18 Score=191.25 Aligned_cols=207 Identities=21% Similarity=0.233 Sum_probs=159.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|||++.+.+.|...+. .+..+.++||+||||||||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~-------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~ 78 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT-------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCIS 78 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHH
Confidence 4667789999999999988865432 2344467999999999999999999997632
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 427 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 427 -------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+++.+++++- .+ ...++.+.+.+.. ..++.|+||||+|.|. ...+|.|+..++
T Consensus 79 i~~~~~~Dv~eidaas~--~~---vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK~LE 141 (491)
T PRK14964 79 IKNSNHPDVIEIDAASN--TS---VDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLKTLE 141 (491)
T ss_pred HhccCCCCEEEEecccC--CC---HHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHHHHh
Confidence 3455554321 22 3445555554432 2356899999999872 346889999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+..++||++|+.+..+.+.+++|| ..+.|..++.++....+...+.+... .++
T Consensus 142 ePp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi------------------------~i~ 196 (491)
T PRK14964 142 EPAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENI------------------------EHD 196 (491)
T ss_pred CCCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 99999999999999999999999999 89999999999999999998876432 288
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++.+..|+..+.| +.|++..++. +++.|+. +.||.+++..++.
T Consensus 197 ~eAL~lIa~~s~G-slR~alslLd--qli~y~~--~~It~e~V~~llg 239 (491)
T PRK14964 197 EESLKLIAENSSG-SMRNALFLLE--QAAIYSN--NKISEKSVRDLLG 239 (491)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcC--CCCCHHHHHHHHc
Confidence 9999999999966 8888877776 3344544 4789998888643
No 74
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.80 E-value=1.3e-18 Score=205.79 Aligned_cols=236 Identities=18% Similarity=0.227 Sum_probs=177.3
Q ss_pred CchhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHH-HHhhch
Q 006458 315 EGAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLS-GATANT 393 (644)
Q Consensus 315 ~~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~-~~~~~~ 393 (644)
.+...+...+..|+| +|...+...+...+.++...+ -+.|+||+.+...|...+ ......
T Consensus 472 v~~~~i~~~~~~~tg------------ip~~~~~~~~~~~l~~l~~~L-------~~~v~GQ~~ai~~l~~~i~~~~~gl 532 (821)
T CHL00095 472 VTEEDIAEIVSAWTG------------IPVNKLTKSESEKLLHMEETL-------HKRIIGQDEAVVAVSKAIRRARVGL 532 (821)
T ss_pred cCHHHHHHHHHHHHC------------CCchhhchhHHHHHHHHHHHh-------cCcCcChHHHHHHHHHHHHHHhhcc
Confidence 346688899999999 898888888888888888887 688999999999996644 444445
Q ss_pred hccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--------------CchhHHHHHHHHHHHHHh
Q 006458 394 KAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--------------LGPQAVTKIHQLFDWAKK 456 (644)
Q Consensus 394 ~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--------------~g~~~~~~l~~~f~~a~~ 456 (644)
..++.|..++||+||||||||++|++||+.+ +.+++.++++++.. .|.+..+ .+..+.+
T Consensus 533 ~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~----~l~~~~~ 608 (821)
T CHL00095 533 KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGG----QLTEAVR 608 (821)
T ss_pred cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccc----hHHHHHH
Confidence 5667787889999999999999999999987 36788888877632 1111112 2233445
Q ss_pred cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC-------------
Q 006458 457 SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRPG------------- 512 (644)
Q Consensus 457 ~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~~------------- 512 (644)
..|++||||||+|++ +..+++.|++.+++ ++.+++||+|||...
T Consensus 609 ~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~ 676 (821)
T CHL00095 609 KKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFE 676 (821)
T ss_pred hCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCc
Confidence 567899999999985 35567777776653 357899999998531
Q ss_pred ------------------------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhh
Q 006458 513 ------------------------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQ 568 (644)
Q Consensus 513 ------------------------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 568 (644)
.|.|+|++|+|.+|.|.+++.++...|++..+.++.... .. +
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl------------~~--~ 742 (821)
T CHL00095 677 LSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRL------------NE--Q 742 (821)
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH------------HH--C
Confidence 145789999999999999999999999999998764331 11 1
Q ss_pred hhhccCCCHHHHHHHHHHc--CCCcHHHHHHHHH
Q 006458 569 KIEIKGLTDDILMEAAAKT--EGFSGREIAKLMA 600 (644)
Q Consensus 569 ~~~~~~~~d~~l~~LA~~t--~G~SgrdI~~L~~ 600 (644)
++.+ .++++.++.|+... ..|..|.|..++.
T Consensus 743 ~i~l-~~~~~~~~~La~~~~~~~~GAR~l~r~i~ 775 (821)
T CHL00095 743 GIQL-EVTERIKTLLIEEGYNPLYGARPLRRAIM 775 (821)
T ss_pred CcEE-EECHHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 2222 38999999999872 3455788887773
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=99.80 E-value=2.1e-18 Score=192.97 Aligned_cols=210 Identities=22% Similarity=0.272 Sum_probs=154.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhH
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~ 443 (644)
.+.+.+|++|+|++.++..|..++.... .+.|++++|||||||||||++|++||+.++.+++.++.++....
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~----~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~---- 78 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWL----KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA---- 78 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHh----cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH----
Confidence 4667789999999999999988775543 34557889999999999999999999999999999998875421
Q ss_pred HHHHHHHHHHHHhc-----CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCH-H
Q 006458 444 VTKIHQLFDWAKKS-----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDS-A 517 (644)
Q Consensus 444 ~~~l~~~f~~a~~~-----~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~-a 517 (644)
..+..+...+... .++.||||||+|.|.... ....++.++..+. ..+..||++||.+..+.+ .
T Consensus 79 -~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 79 -DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred -HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 1233333333221 246799999999985421 1123344444443 344567788999988887 7
Q ss_pred HhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHH
Q 006458 518 VADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 597 (644)
Q Consensus 518 l~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~ 597 (644)
+.+|+ ..|.|++|+..++..+|+..+..... .++++.+..|+..+.| ||+.
T Consensus 148 Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi------------------------~i~~eaL~~Ia~~s~G----DlR~ 198 (482)
T PRK04195 148 LRNAC-LMIEFKRLSTRSIVPVLKRICRKEGI------------------------ECDDEALKEIAERSGG----DLRS 198 (482)
T ss_pred Hhccc-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC----CHHH
Confidence 77787 89999999999999999998875432 2788999999998755 7888
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 598 LMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 598 L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
++..++..+. +...+|.+++..++
T Consensus 199 ain~Lq~~a~--~~~~it~~~v~~~~ 222 (482)
T PRK04195 199 AINDLQAIAE--GYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHhc--CCCCCcHHHHHHhh
Confidence 8877777443 33577888776554
No 76
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.3e-18 Score=185.81 Aligned_cols=207 Identities=21% Similarity=0.237 Sum_probs=154.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.|.+|++|||++.+.+.+...+.. +..+..+||+||||||||++|+.+|+.+++.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 45677899999999999988665432 2233457999999999999999999998632
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.++++. ......++.+.+.+... ..+.|+||||+|.+. ...++.+|..++
T Consensus 82 ~~~~~~~d~~~~~~~~-----~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk~lE 144 (363)
T PRK14961 82 IEKGLCLDLIEIDAAS-----RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLKTLE 144 (363)
T ss_pred HhcCCCCceEEecccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHHHHh
Confidence 12221110 12233455555544322 235799999999872 346778888888
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.++.||++|+.++.+.+.+.+|| ..++|++|+.++...++...+..... .++
T Consensus 145 e~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~------------------------~i~ 199 (363)
T PRK14961 145 EPPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESI------------------------DTD 199 (363)
T ss_pred cCCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88889999999998899999999999 89999999999999999988876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++.+..|+..+.| +.|++..++..+ +.++ .+.+|.+++.+++.
T Consensus 200 ~~al~~ia~~s~G-~~R~al~~l~~~--~~~~--~~~It~~~v~~~l~ 242 (363)
T PRK14961 200 EYALKLIAYHAHG-SMRDALNLLEHA--INLG--KGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHH--HHhc--CCCCCHHHHHHHHC
Confidence 8999999999876 788877777533 3343 46799998888664
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.1e-18 Score=191.18 Aligned_cols=207 Identities=19% Similarity=0.208 Sum_probs=153.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++.+.+.|...+.. +..+..+||+||+|||||++|+.||+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 45667899999999999998776532 2232347999999999999999999987632
Q ss_pred ----------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH
Q 006458 428 ----------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 494 (644)
Q Consensus 428 ----------~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~ 494 (644)
++.++++.. . +...++.+.+.+. ...++.|+||||+|.|. ...+|.||..
T Consensus 79 i~~~~~~~~dvieidaas~--~---gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NALLK~ 141 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASH--G---GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNALLKI 141 (584)
T ss_pred hhcccCCCceEEEeccccc--c---CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHHHHH
Confidence 222222111 1 2334444443333 23457899999999972 3478899999
Q ss_pred hCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 495 TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 495 ~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
+++.+.+++||++|+.+..+.+.|++|+ .+++|..++.++....+..++.+... .
T Consensus 142 LEEpp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi------------------------~ 196 (584)
T PRK14952 142 VEEPPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGV------------------------V 196 (584)
T ss_pred HhcCCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCC------------------------C
Confidence 9999999999999999999999999998 89999999999999999888876432 2
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
++++.+..|+..+.| +.|++.+++..+ +.+.. +..||.+++..++
T Consensus 197 i~~~al~~Ia~~s~G-dlR~aln~Ldql--~~~~~-~~~It~~~v~~ll 241 (584)
T PRK14952 197 VDDAVYPLVIRAGGG-SPRDTLSVLDQL--LAGAA-DTHVTYQRALGLL 241 (584)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHH--HhccC-CCCcCHHHHHHHH
Confidence 788999999988855 778887777633 33432 4567777666653
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.6e-18 Score=189.25 Aligned_cols=207 Identities=20% Similarity=0.231 Sum_probs=153.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|||++.+...|...+.. +..+..+||+||||||||++|+.+|+.+++
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~-------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET-------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 45667899999999999888665432 223345899999999999999999998754
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 427 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 427 -------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+++.+++.. ..|.+ .++.+++.+. ....+.|+||||+|.| ....++.||..++
T Consensus 82 i~~~~~~dlieidaas--~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~l------------s~~a~naLLK~LE 144 (546)
T PRK14957 82 INNNSFIDLIEIDAAS--RTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHML------------SKQSFNALLKTLE 144 (546)
T ss_pred HhcCCCCceEEeeccc--ccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhc------------cHHHHHHHHHHHh
Confidence 233333211 12222 3344443333 2345689999999997 2347889999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+..++||++|+.+..+.+.+++|| .+++|.+++.++....+...+.+..+ .++
T Consensus 145 epp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi------------------------~~e 199 (546)
T PRK14957 145 EPPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENI------------------------NSD 199 (546)
T ss_pred cCCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88889999998888898998999999 99999999999999998888876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
+..+..|+..+.| +.|++..++.. ++.+.. +.||.+++++++.
T Consensus 200 ~~Al~~Ia~~s~G-dlR~alnlLek--~i~~~~--~~It~~~V~~~l~ 242 (546)
T PRK14957 200 EQSLEYIAYHAKG-SLRDALSLLDQ--AISFCG--GELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH--HHHhcc--CCCCHHHHHHHHc
Confidence 8999999999865 77777777753 334433 5688888887544
No 79
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=7.3e-18 Score=190.70 Aligned_cols=206 Identities=25% Similarity=0.319 Sum_probs=155.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|||++++...|...+.. +..+..+|||||+|||||++|+.+|+.+++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 45667899999999999988765543 233345899999999999999999998753
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 427 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 427 -------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+++.++++. ..+...++.+.+.+.. ..++.|+||||+|.|. ...+|.|+..++
T Consensus 82 i~~g~~~dv~eidaas-----~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLKtLE 144 (559)
T PRK05563 82 ITNGSLMDVIEIDAAS-----NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLKTLE 144 (559)
T ss_pred HhcCCCCCeEEeeccc-----cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHhc
Confidence 233333221 1234455556555543 3347899999999872 346889999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.+..+.+.+++|| ..+.|++|+..+...+++..+.+.... ++
T Consensus 145 epp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~------------------------i~ 199 (559)
T PRK05563 145 EPPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIE------------------------YE 199 (559)
T ss_pred CCCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCC------------------------CC
Confidence 88899999999999999999999999 789999999999999999888764322 78
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
++.+..|+..+.| +.|++..++. +...|+ +..||.+++..++
T Consensus 200 ~~al~~ia~~s~G-~~R~al~~Ld--q~~~~~--~~~It~~~V~~vl 241 (559)
T PRK05563 200 DEALRLIARAAEG-GMRDALSILD--QAISFG--DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--cCCCCHHHHHHHh
Confidence 8999999999876 7788777775 334454 3568877766653
No 80
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=6.2e-18 Score=188.51 Aligned_cols=206 Identities=20% Similarity=0.238 Sum_probs=152.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|+|+++++..|..++... ..+..+|||||||||||++|+++|+.+.+
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~-------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i 79 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG-------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV 79 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH
Confidence 456678999999999999887766432 23234699999999999999999998853
Q ss_pred ------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC
Q 006458 427 ------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 497 (644)
Q Consensus 427 ------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~ 497 (644)
+++.++... ..+ ...++.+...+.. ...+.||||||+|.+ ....++.|+..++.
T Consensus 80 ~~~~h~dv~el~~~~--~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l------------s~~a~naLLk~LEe 142 (504)
T PRK14963 80 RRGAHPDVLEIDAAS--NNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMM------------SKSAFNALLKTLEE 142 (504)
T ss_pred hcCCCCceEEecccc--cCC---HHHHHHHHHHHhhccccCCCeEEEEECcccc------------CHHHHHHHHHHHHh
Confidence 133344321 122 3334444333332 234679999999986 23468888988888
Q ss_pred CCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 498 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 498 ~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
.+.+++||++||.+..+.+.+.+|| ..++|.+|+.++....++..+.+... .+++
T Consensus 143 p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi------------------------~i~~ 197 (504)
T PRK14963 143 PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGR------------------------EAEP 197 (504)
T ss_pred CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCH
Confidence 8888999999999999999999999 78999999999999999999876432 2788
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 578 DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 578 ~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
+.+..|+..+.| +.|.+.+++..+. .+ +..||.+++..++.
T Consensus 198 ~Al~~ia~~s~G-dlR~aln~Lekl~--~~---~~~It~~~V~~~l~ 238 (504)
T PRK14963 198 EALQLVARLADG-AMRDAESLLERLL--AL---GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHH--hc---CCCCCHHHHHHHHC
Confidence 999999999876 5566666555432 22 34789888887754
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=4.8e-18 Score=190.92 Aligned_cols=207 Identities=22% Similarity=0.265 Sum_probs=156.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++.+++.|...+.. +..+..+||+||||||||++|+.+|+.+++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~-------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ-------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 45667899999999999988765532 2233457999999999999999999998652
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.++++. ......++.+...+.. ..++.|+||||+|.|. ...+|.||+.++
T Consensus 82 i~~~~~~d~~ei~~~~-----~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK~LE 144 (527)
T PRK14969 82 IDSGRFVDLIEVDAAS-----NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLKTLE 144 (527)
T ss_pred HhcCCCCceeEeeccc-----cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHHHHh
Confidence 22222211 1234455666655543 2345799999999872 346889999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.+..+.+.+++|| ..++|..++.++....+...+.+..+ .++
T Consensus 145 epp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi------------------------~~~ 199 (527)
T PRK14969 145 EPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENI------------------------PFD 199 (527)
T ss_pred CCCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88899999999999999998999999 99999999999999988888865321 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
+..+..|+..+.| +.|++..++. ++..++ .+.|+.+++..++.
T Consensus 200 ~~al~~la~~s~G-slr~al~lld--qai~~~--~~~I~~~~v~~~~~ 242 (527)
T PRK14969 200 ATALQLLARAAAG-SMRDALSLLD--QAIAYG--GGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHHC
Confidence 8899999999866 7788888876 344554 46788888887765
No 82
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=6.1e-18 Score=189.99 Aligned_cols=209 Identities=21% Similarity=0.255 Sum_probs=153.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++.++..|...+.. +.-..++||+||||||||++|+.||+.+++.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 45677899999999998888776532 2223479999999999999999999998642
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS 499 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~ 499 (644)
++.+++.. ..+.+....+.+.+...-....+.||||||+|.|. ...++.|+..+++..
T Consensus 82 i~~g~hpDv~eId~a~--~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LEEP~ 147 (624)
T PRK14959 82 VTQGMHVDVVEIDGAS--NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLEEPP 147 (624)
T ss_pred HhcCCCCceEEEeccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhhccC
Confidence 33443321 12333334444444433334456899999999972 345788888888888
Q ss_pred CCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHH
Q 006458 500 KDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 579 (644)
Q Consensus 500 ~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 579 (644)
.+++||++||.+..+.+.|++|| .+|.|+.++.++...+|...+..... .++++.
T Consensus 148 ~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi------------------------~id~ea 202 (624)
T PRK14959 148 ARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGV------------------------DYDPAA 202 (624)
T ss_pred CCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHH
Confidence 89999999999999999999999 78899999999999999887765422 278999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 580 LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 580 l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
+..|+..+.| +.|++..++..+ +.. ....||.+++..++
T Consensus 203 l~lIA~~s~G-dlR~Al~lLeql--l~~--g~~~It~d~V~~~l 241 (624)
T PRK14959 203 VRLIARRAAG-SVRDSMSLLGQV--LAL--GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHH--HHh--cCCCcCHHHHHHHh
Confidence 9999999866 566666666532 222 23478888876654
No 83
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=6.9e-18 Score=196.82 Aligned_cols=206 Identities=20% Similarity=0.178 Sum_probs=151.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++.+++.|...+.. +.....+||+||+|||||++|+.||+.+++.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 46677899999999999988776542 2222348999999999999999999998642
Q ss_pred ----------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH
Q 006458 428 ----------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 494 (644)
Q Consensus 428 ----------~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~ 494 (644)
|+.+++... .+ +..++.+.+.+. ...++.|+||||+|.|. ...+|.||+.
T Consensus 81 ~~~g~~~~~dv~eidaas~--~~---Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~NaLLK~ 143 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASH--GG---VDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNALLKI 143 (824)
T ss_pred HHcCCCCCCcEEEeccccc--CC---HHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHHHHHH
Confidence 222322111 12 333444333222 23457899999999972 3578899999
Q ss_pred hCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 495 TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 495 ~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
+++...+++||++|+.++.|.+.|++|| .+|.|..++.++...+|..++.+..+ .
T Consensus 144 LEEpP~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv------------------------~ 198 (824)
T PRK07764 144 VEEPPEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGV------------------------P 198 (824)
T ss_pred HhCCCCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCC------------------------C
Confidence 9999999999999999999999999999 99999999999999999888866432 1
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
++++.+..|+..+.| +.+++..++..+. .+. ++..||.+++..+
T Consensus 199 id~eal~lLa~~sgG-dlR~Al~eLEKLi--a~~-~~~~IT~e~V~al 242 (824)
T PRK07764 199 VEPGVLPLVIRAGGG-SVRDSLSVLDQLL--AGA-GPEGVTYERAVAL 242 (824)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHHH--hhc-CCCCCCHHHHHHH
Confidence 788899999999866 7777777775433 332 2355777665544
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.78 E-value=2.7e-17 Score=174.29 Aligned_cols=213 Identities=17% Similarity=0.282 Sum_probs=144.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhH
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~ 443 (644)
.+.+.+|++++|++.+...+..++. .+..+..+||+||||+|||++++++++.++.+++.+++++ .. .+.
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~--~~~ 83 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVK-------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR--IDF 83 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHh-------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc--HHH
Confidence 4667789999999999998877654 2233345666999999999999999999999999999877 22 111
Q ss_pred H-HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhccc
Q 006458 444 V-TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRI 522 (644)
Q Consensus 444 ~-~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rf 522 (644)
. ..+............+.||||||+|.+.. ......+..+ ++....++.||+|||.+..+.+++.+||
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~~L~~~---le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------ADAQRHLRSF---MEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccC--------HHHHHHHHHH---HHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1 11222221111123578999999998621 1223334333 4445677899999999999999999999
Q ss_pred ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 006458 523 DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASV 602 (644)
Q Consensus 523 d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~ 602 (644)
..+.|+.|+.+++..|+..++......... .++ .++++.+..++..+.| ++..++..+
T Consensus 153 -~~i~~~~p~~~~~~~il~~~~~~~~~~~~~--------------~~~---~i~~~al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 153 -RVIDFGVPTKEEQIEMMKQMIVRCKGILEA--------------EGV---EVDMKVLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHHHHHHHh--------------cCC---CCCHHHHHHHHHhcCC----CHHHHHHHH
Confidence 789999999999999988876654211000 011 2688899999987654 455655555
Q ss_pred HHHHhCCCCCccCHHHHHHH
Q 006458 603 QAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 603 ~aa~~~~~~~~lt~~~~~~a 622 (644)
+....+ ..++.+++...
T Consensus 211 ~~~~~~---~~i~~~~l~~~ 227 (316)
T PHA02544 211 QRYAST---GKIDAGILSEV 227 (316)
T ss_pred HHHHcc---CCCCHHHHHHh
Confidence 544322 35666555443
No 85
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.9e-18 Score=181.06 Aligned_cols=174 Identities=23% Similarity=0.297 Sum_probs=131.7
Q ss_pred ccCCCCCCccccChHHHHHHH-HHHHH---hhchhccCCCC-ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIR-QLSGA---TANTKAHNAPF-RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~-~l~~~---~~~~~~~~~p~-~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
...+.+|+.|+..+++++.|. ++..+ ...++..|.|+ ++.|||||||||||+++-++|++++.+++.++.+.+..
T Consensus 194 f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~ 273 (457)
T KOG0743|consen 194 FPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL 273 (457)
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC
Confidence 344578999999999998883 34444 44566777777 69999999999999999999999999999998766643
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc-----CC-HHHHHHHHHHHHHhC----CCCCCEEEEEEe
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY-----MS-EAQRSALNALLFRTG----DQSKDIVLALAT 508 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~-----~~-~~~~~~l~~lL~~~~----~~~~~viiI~tt 508 (644)
.. .++.++... ...+||+|.|||.-+.-+.... .. ....-.|.-||.-++ .+..--|||+||
T Consensus 274 n~-----dLr~LL~~t---~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 274 DS-----DLRHLLLAT---PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred cH-----HHHHHHHhC---CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 32 255555433 3468999999999654222111 01 012235666666665 244567999999
Q ss_pred CCCCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHH
Q 006458 509 NRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLD 545 (644)
Q Consensus 509 N~~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~ 545 (644)
|+++.|||+|+| |+|.+|++...+......++..||.
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 999999999999 9999999999999999999999985
No 86
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.2e-17 Score=189.64 Aligned_cols=205 Identities=21% Similarity=0.266 Sum_probs=155.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+.+|++|||++++...|...+.. +..+..+|||||+|||||++|+.+|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT-------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 45677899999999999888765532 2334558999999999999999999998542
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.+++.. ......++.+.+.+.. ..++.|+||||+|.|. ...+|.|+..++
T Consensus 82 i~~g~~~d~~eid~~s-----~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk~LE 144 (576)
T PRK14965 82 ITEGRSVDVFEIDGAS-----NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLKTLE 144 (576)
T ss_pred HhcCCCCCeeeeeccC-----ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHHHHH
Confidence 23333221 1123345555554432 2346799999999872 346889999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++||.++.|.+.|++|| ..+.|..++.++....+...+.+... .++
T Consensus 145 epp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi------------------------~i~ 199 (576)
T PRK14965 145 EPPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGI------------------------SIS 199 (576)
T ss_pred cCCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCC------------------------CCC
Confidence 88999999999999999999999999 89999999999999999888876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
++.+..|+..+.| +.|++..++. +...|.. +.||.+++..+
T Consensus 200 ~~al~~la~~a~G-~lr~al~~Ld--qliay~g--~~It~edV~~l 240 (576)
T PRK14965 200 DAALALVARKGDG-SMRDSLSTLD--QVLAFCG--DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHH--HHHHhcc--CCCCHHHHHHH
Confidence 9999999999976 7777777765 4445544 35787777665
No 87
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.1e-17 Score=183.63 Aligned_cols=207 Identities=22% Similarity=0.269 Sum_probs=151.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+..|++++|++.+...|...+.. +..+..+|||||||||||++|+.+|+.+++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 45667899999999999888665422 2233457899999999999999999987631
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.++++. ..| ...++.+.+.+.. ...+.|+||||+|.|. ...++.|+..++
T Consensus 82 i~~g~~~d~~eidaas--~~g---vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~LE 144 (486)
T PRK14953 82 IDKGSFPDLIEIDAAS--NRG---IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTLE 144 (486)
T ss_pred HhcCCCCcEEEEeCcc--CCC---HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHHh
Confidence 11121111 122 2233444333332 3346799999999872 335788888888
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
..+..++||++|+.++.+.+.+.+|| ..+.|++|+.+++..++..++..... .++
T Consensus 145 epp~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi------------------------~id 199 (486)
T PRK14953 145 EPPPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKI------------------------EYE 199 (486)
T ss_pred cCCCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88888999999988888999999999 68999999999999999998876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++.+..|+..+.| +.|++.+++..+ ..++ ++.+|.+++..++.
T Consensus 200 ~~al~~La~~s~G-~lr~al~~Ldkl--~~~~--~~~It~~~V~~~lg 242 (486)
T PRK14953 200 EKALDLLAQASEG-GMRDAASLLDQA--STYG--EGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHH--HHhc--CCCcCHHHHHHHhC
Confidence 8999999999876 677777777533 3443 45788888888653
No 88
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.76 E-value=8.3e-18 Score=184.86 Aligned_cols=212 Identities=26% Similarity=0.340 Sum_probs=165.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCe--E-----------E
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY--A-----------L 430 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~--~-----------~ 430 (644)
.+.+..|++++|++.+...|...+...+.. ..+||.||.|||||++||.+|+.+++.- . .
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~-------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRIA-------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcch-------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 566778999999999999997755443332 3589999999999999999999986542 1 0
Q ss_pred Ee-C--CCCCCC---chhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCC
Q 006458 431 MT-G--GDVAPL---GPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD 501 (644)
Q Consensus 431 i~-~--~~l~~~---g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~ 501 (644)
++ | .|+..+ ...++..++.+.+.+.. ..++.|++|||+|.| ....+|.||+.+++.+.+
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEEPP~h 149 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEEPPSH 149 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhcccccCccC
Confidence 11 1 112111 12234455555555442 335789999999986 466899999999999999
Q ss_pred EEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHH
Q 006458 502 IVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILM 581 (644)
Q Consensus 502 viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 581 (644)
|+||++|..+..+++.+++|| ..+.|...+.++....|...+.+..+. ++++.+.
T Consensus 150 V~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~------------------------~e~~aL~ 204 (515)
T COG2812 150 VKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGIN------------------------IEEDALS 204 (515)
T ss_pred eEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCc------------------------cCHHHHH
Confidence 999999999999999999999 999999999999999999998775432 7899999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 582 EAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 582 ~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
.|++..+| |.||...|+. |+..++. +.||.+.++..+.
T Consensus 205 ~ia~~a~G-s~RDalslLD--q~i~~~~--~~It~~~v~~~lG 242 (515)
T COG2812 205 LIARAAEG-SLRDALSLLD--QAIAFGE--GEITLESVRDMLG 242 (515)
T ss_pred HHHHHcCC-ChhhHHHHHH--HHHHccC--CcccHHHHHHHhC
Confidence 99999988 8999999998 6676655 6777777776543
No 89
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=3.8e-17 Score=185.12 Aligned_cols=213 Identities=21% Similarity=0.230 Sum_probs=160.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe-------CC--
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT-------GG-- 434 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~-------~~-- 434 (644)
.+.+.+|++|||++.++..|...+. .+..+..+|||||+|||||++|+.||+.+++.....+ |+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~-------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE-------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 4667789999999999998876543 2334457999999999999999999999865422111 10
Q ss_pred ------------CCCCC---chhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 435 ------------DVAPL---GPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 435 ------------~l~~~---g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++..+ ..-....++.+++.+.. ..++.||||||+|.|. ...+|.||..++
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKtLE 157 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKTLE 157 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHHHH
Confidence 11000 11124455666655543 3357899999999972 346889999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.++.+.+.+++|| ..+.|..|+.++...+|...+.+... .++
T Consensus 158 ePp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi------------------------~i~ 212 (598)
T PRK09111 158 EPPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGV------------------------EVE 212 (598)
T ss_pred hCCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88899999999998888999999999 89999999999999999998876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
++.+..|+..+.| +.+++..++.. .+.++ .+.||.++++.++..
T Consensus 213 ~eAl~lIa~~a~G-dlr~al~~Ldk--li~~g--~g~It~e~V~~llg~ 256 (598)
T PRK09111 213 DEALALIARAAEG-SVRDGLSLLDQ--AIAHG--AGEVTAEAVRDMLGL 256 (598)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH--HHhhc--CCCcCHHHHHHHhCC
Confidence 8999999999966 78888888753 34454 357999999988753
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.9e-17 Score=183.68 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=152.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.|..|++++|++.+...+...+. .+..+.++||+||||||||++|+.+|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~-------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL-------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 4567789999999999988865432 2333456999999999999999999999743
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 427 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 427 -------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+++.++++. .. +...++.+...+.. ..++.|++|||+|.|. ....+.|+..++
T Consensus 82 i~~~~h~DiieIdaas--~i---gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLLKtLE 144 (605)
T PRK05896 82 INTNQSVDIVELDAAS--NN---GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALLKTLE 144 (605)
T ss_pred HHcCCCCceEEecccc--cc---CHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHHHHHH
Confidence 223333221 12 23344555444432 2345799999999872 235788999898
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.++++|++|+.+..+.+.+++|| .+++|++|+..+....+...+.+... .++
T Consensus 145 EPp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi------------------------~Is 199 (605)
T PRK05896 145 EPPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKI------------------------KIE 199 (605)
T ss_pred hCCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88889999999999999999999999 78999999999999999988876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
++.+..|+..+.| +.|++..++..+. .+.. ..||.++++.+
T Consensus 200 ~eal~~La~lS~G-dlR~AlnlLekL~--~y~~--~~It~e~V~el 240 (605)
T PRK05896 200 DNAIDKIADLADG-SLRDGLSILDQLS--TFKN--SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHHHH--hhcC--CCCCHHHHHHH
Confidence 8999999999876 7777777776543 3333 23888777764
No 91
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=4.7e-17 Score=181.02 Aligned_cols=205 Identities=26% Similarity=0.296 Sum_probs=151.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|||++.+...|...+.. +..+..+|||||+|+|||++|+.+++.+.+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 46677899999999999888776532 233345799999999999999999998732
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 427 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 427 -------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
+++.+++.. ..+ ...++.+...... ..++.|+||||+|.|. ...++.||..++
T Consensus 80 ~~~~~h~dv~eldaas--~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK~LE 142 (535)
T PRK08451 80 ALENRHIDIIEMDAAS--NRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLKTLE 142 (535)
T ss_pred HhhcCCCeEEEecccc--ccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHHh
Confidence 122222211 111 3345555443322 2346799999999972 356888899999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+.+.+++||++|+.+..+.+.+++|+ .+++|.+++.++....+...+..... .++
T Consensus 143 Epp~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi------------------------~i~ 197 (535)
T PRK08451 143 EPPSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGV------------------------SYE 197 (535)
T ss_pred hcCCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88899999999999999999999998 89999999999999998888876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
++.+..|+..+.| +.|++..++. ++..|. .+.||.+++..+
T Consensus 198 ~~Al~~Ia~~s~G-dlR~alnlLd--qai~~~--~~~It~~~V~~~ 238 (535)
T PRK08451 198 PEALEILARSGNG-SLRDTLTLLD--QAIIYC--KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHH--HHHHhc--CCCCCHHHHHHH
Confidence 8999999999876 7777777775 334444 245666666554
No 92
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.9e-17 Score=180.90 Aligned_cols=205 Identities=21% Similarity=0.310 Sum_probs=164.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
..+||+|+||||||++++++|.++|.+++.++|.++.. ........+..+|..++++. |+||||-++|.|....++..
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dgge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDGGE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCCch
Confidence 46999999999999999999999999999999998865 55667888999999999886 89999999999975544422
Q ss_pred CCHHHHHHHHHHHH-HhC-CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCC
Q 006458 480 MSEAQRSALNALLF-RTG-DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPG 557 (644)
Q Consensus 480 ~~~~~~~~l~~lL~-~~~-~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~ 557 (644)
.-....+++.++. ++. .....++||+|++..+.+++.+++-|-..|.++.|+.++|.+||+.|+....+.
T Consensus 511 -d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n------- 582 (953)
T KOG0736|consen 511 -DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN------- 582 (953)
T ss_pred -hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-------
Confidence 2234455666655 222 356789999999999999999999999999999999999999999999875421
Q ss_pred cchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHH-----HHHHhCC---------------CCCccCHH
Q 006458 558 LVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASV-----QAAVYGS---------------ENCVLDPS 617 (644)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~-----~aa~~~~---------------~~~~lt~~ 617 (644)
.+..+..++.+|.|||.+++..|+..+ ....... ....++++
T Consensus 583 ------------------~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~e 644 (953)
T KOG0736|consen 583 ------------------QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEE 644 (953)
T ss_pred ------------------hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHH
Confidence 456888999999999999999998432 1111111 12678999
Q ss_pred HHHHHHHHHHHhHHH
Q 006458 618 LFREVVDYKVAEHQQ 632 (644)
Q Consensus 618 ~~~~al~~~~~~~~~ 632 (644)
||.++++....++.+
T Consensus 645 df~kals~~~~~fs~ 659 (953)
T KOG0736|consen 645 DFDKALSRLQKEFSD 659 (953)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999988877754
No 93
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.6e-17 Score=178.12 Aligned_cols=238 Identities=18% Similarity=0.229 Sum_probs=177.3
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC----CeEEEeCCCCCCCc-hhHHH
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----DYALMTGGDVAPLG-PQAVT 445 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----~~~~i~~~~l~~~g-~~~~~ 445 (644)
.++|..+..++...+- ...+.....+|||+||+|||||.|++++++++.. .+.+++|+.+.... ...-.
T Consensus 408 ~d~i~~~s~kke~~n~------~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk 481 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQ------ELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQK 481 (952)
T ss_pred Cceeecchhhhhhhhh------hcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHH
Confidence 5677777777666431 1112334468999999999999999999999853 46677888876532 23344
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhccccCc-C----CHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhc
Q 006458 446 KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY-M----SEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD 520 (644)
Q Consensus 446 ~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~-~----~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~ 520 (644)
.+..+|..+..+. |+||+||++|.|++...+.+ . +.....+++.++.........+.||+|.+....|++-|.+
T Consensus 482 ~l~~vfse~~~~~-PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s 560 (952)
T KOG0735|consen 482 FLNNVFSEALWYA-PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVS 560 (952)
T ss_pred HHHHHHHHHHhhC-CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcC
Confidence 5677888888777 89999999999987332222 1 2233445566666666677778999999999999998887
Q ss_pred --ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHH
Q 006458 521 --RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKL 598 (644)
Q Consensus 521 --Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L 598 (644)
+|+.++.++.|...+|..||...+.+... +...++++.++..|+||...|+..+
T Consensus 561 ~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~------------------------~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 561 PLLFQIVIALPAPAVTRRKEILTTIFSKNLS------------------------DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred ccceEEEEecCCcchhHHHHHHHHHHHhhhh------------------------hhhhHHHHHHHHhcCCccchhHHHH
Confidence 89999999999999999999999987542 1455677779999999999999999
Q ss_pred HHH-HHHHHh---CCCCCccCHHHHHHHHHHHHHhHHHHHHhhhc
Q 006458 599 MAS-VQAAVY---GSENCVLDPSLFREVVDYKVAEHQQRRKLAAA 639 (644)
Q Consensus 599 ~~~-~~aa~~---~~~~~~lt~~~~~~al~~~~~~~~~~~~~~~~ 639 (644)
+.. ++.+.. ......+|.++|.+++..++.-..+..++...
T Consensus 617 VeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~ 661 (952)
T KOG0735|consen 617 VERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKS 661 (952)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhcccccc
Confidence 944 444431 22234899999999999999887777665443
No 94
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=4.4e-17 Score=185.57 Aligned_cols=211 Identities=22% Similarity=0.313 Sum_probs=154.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEE---eCC------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALM---TGG------ 434 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i---~~~------ 434 (644)
.+.|.+|++|||++.+...|...+.. +..+..+|||||+|||||++|+.+|+.+.+.-... .|+
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~-------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~ 83 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS-------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENV 83 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhh
Confidence 46677899999999999888665532 23334589999999999999999999876431100 000
Q ss_pred ----CC---CCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEE
Q 006458 435 ----DV---APLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 504 (644)
Q Consensus 435 ----~l---~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~vii 504 (644)
++ ...+..+...++.+...+.. ..++.|+||||+|.|. ...++.||..++..+..++|
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEPP~~tif 151 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEPPKHVIF 151 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcCCCceEE
Confidence 00 00011123445666555543 2456899999999972 24788999999998999999
Q ss_pred EEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHH
Q 006458 505 ALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAA 584 (644)
Q Consensus 505 I~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA 584 (644)
|++|+.++.+.+.+++|| .++.|.+|+.++...+|...+.+... .++++.+..|+
T Consensus 152 ILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI------------------------~id~eAl~~LA 206 (725)
T PRK07133 152 ILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENI------------------------SYEKNALKLIA 206 (725)
T ss_pred EEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHH
Confidence 999999999999999999 79999999999999999988876432 27888999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 585 AKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 585 ~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
..+.| +.|++..++..+ +.|+. +.||.+++..++
T Consensus 207 ~lS~G-slR~AlslLekl--~~y~~--~~It~e~V~ell 240 (725)
T PRK07133 207 KLSSG-SLRDALSIAEQV--SIFGN--NKITLKNVEELF 240 (725)
T ss_pred HHcCC-CHHHHHHHHHHH--HHhcc--CCCCHHHHHHHH
Confidence 99876 778888777643 33442 448888777653
No 95
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=7.4e-17 Score=177.15 Aligned_cols=206 Identities=27% Similarity=0.377 Sum_probs=145.7
Q ss_pred cCCCCCCccccChHHHHH---HHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCch
Q 006458 365 KNGNGFGDVILHPSLQKR---IRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGP 441 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~---l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~ 441 (644)
..+.+|+++||++++... +..++.. ..+.++||+||||||||++|+.|++.++.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~--------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~----- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA--------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS----- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc--------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-----
Confidence 345679999999998666 5544421 123479999999999999999999999999999987543
Q ss_pred hHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCCH
Q 006458 442 QAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLDS 516 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt--N~~~~ld~ 516 (644)
....+..+++.+.. ...+.||||||+|.|. ... .+.|+..++ ...+++|++| |....+++
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~---------~~~---q~~LL~~le--~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN---------KAQ---QDALLPHVE--DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC---------HHH---HHHHHHHhh--cCcEEEEEeCCCChhhhccH
Confidence 13344555555532 2357899999999973 222 334444443 3556777654 44558999
Q ss_pred HHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHH
Q 006458 517 AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIA 596 (644)
Q Consensus 517 al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~ 596 (644)
++++|| .++.|++|+.++...+++..+..... ++ ..++++.+..|++.+.| +.|.+.
T Consensus 138 aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-------------------~~--i~i~~~al~~l~~~s~G-d~R~al 194 (413)
T PRK13342 138 ALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-------------------GL--VELDDEALDALARLANG-DARRAL 194 (413)
T ss_pred HHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-------------------CC--CCCCHHHHHHHHHhCCC-CHHHHH
Confidence 999999 89999999999999999988765321 01 12788999999999855 555555
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 597 KLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 597 ~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
+++. .+... ...||.+++..++...
T Consensus 195 n~Le---~~~~~--~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 195 NLLE---LAALG--VDSITLELLEEALQKR 219 (413)
T ss_pred HHHH---HHHHc--cCCCCHHHHHHHHhhh
Confidence 5543 32222 4679999999988764
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.75 E-value=8.6e-17 Score=171.65 Aligned_cols=211 Identities=20% Similarity=0.243 Sum_probs=145.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~~l~~ 438 (644)
.+.+.+|++++|++.+...+..++.. + ..+++|||||||||||++|+++++.+. .+++.+++.++..
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~-------~-~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS-------P-NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD 79 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC-------C-CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh
Confidence 45667799999999998888776532 1 123699999999999999999999874 3467777765421
Q ss_pred Cc---------------h------hHHHHHHHHHHHHHhc----CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHH
Q 006458 439 LG---------------P------QAVTKIHQLFDWAKKS----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 493 (644)
Q Consensus 439 ~g---------------~------~~~~~l~~~f~~a~~~----~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~ 493 (644)
.. . .....++.+..+.... ..+.||||||+|.+. ......| +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~---------~~~~~~L---~~ 147 (337)
T PRK12402 80 QGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR---------EDAQQAL---RR 147 (337)
T ss_pred cchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC---------HHHHHHH---HH
Confidence 10 0 0112233333333222 235699999999872 2223333 33
Q ss_pred HhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhcc
Q 006458 494 RTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573 (644)
Q Consensus 494 ~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (644)
.++....++.||++++.+..+.+.+.+|+ ..+.|.+|+.+++..++...+.+...
T Consensus 148 ~le~~~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~------------------------ 202 (337)
T PRK12402 148 IMEQYSRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGV------------------------ 202 (337)
T ss_pred HHHhccCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------
Confidence 34444555778888887788888999998 78999999999999999988876432
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 574 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 574 ~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
.++++.+..|+..+.| ++..++..++.++.. ...||.+++++++..
T Consensus 203 ~~~~~al~~l~~~~~g----dlr~l~~~l~~~~~~--~~~It~~~v~~~~~~ 248 (337)
T PRK12402 203 DYDDDGLELIAYYAGG----DLRKAILTLQTAALA--AGEITMEAAYEALGD 248 (337)
T ss_pred CCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHc--CCCCCHHHHHHHhCC
Confidence 2789999999998744 555566655555532 247999999887653
No 97
>PRK06893 DNA replication initiation factor; Validated
Probab=99.75 E-value=7.8e-17 Score=163.09 Aligned_cols=210 Identities=12% Similarity=0.147 Sum_probs=136.9
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCch
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP 441 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~ 441 (644)
.+..+|+++++.++.. .+..+.... .. ...+.++||||||||||+|+.++|+++ +....+++........
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~---~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~- 82 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNF---ID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS- 82 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHh---hc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh-
Confidence 4566899999776543 222222221 11 122358999999999999999999886 4455555543221111
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCCC---CHH
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN-RPGDL---DSA 517 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN-~~~~l---d~a 517 (644)
..++.. .....+|+|||++.+.+.. .....+..++...... +..++|+|+| .|..+ .+.
T Consensus 83 ------~~~~~~---~~~~dlLilDDi~~~~~~~-------~~~~~l~~l~n~~~~~-~~~illits~~~p~~l~~~~~~ 145 (229)
T PRK06893 83 ------PAVLEN---LEQQDLVCLDDLQAVIGNE-------EWELAIFDLFNRIKEQ-GKTLLLISADCSPHALSIKLPD 145 (229)
T ss_pred ------HHHHhh---cccCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHc-CCcEEEEeCCCChHHccccchh
Confidence 122222 2346799999999874321 2222344444444222 3345555554 45544 489
Q ss_pred Hhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 518 VADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 518 l~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+.+|+ +.++.++.|+.+++..|++..+..... .++++.++.|+.++.| +.|.+
T Consensus 146 L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l------------------------~l~~~v~~~L~~~~~~-d~r~l 200 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI------------------------ELSDEVANFLLKRLDR-DMHTL 200 (229)
T ss_pred HHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhccC-CHHHH
Confidence 99977 468999999999999999988865322 2899999999999876 77888
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 596 AKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 596 ~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
..++..+..++. .....||..++++++.
T Consensus 201 ~~~l~~l~~~~~-~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 201 FDALDLLDKASL-QAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHHHHH-hcCCCCCHHHHHHHhc
Confidence 888776654444 3335799999998864
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=6e-17 Score=189.49 Aligned_cols=227 Identities=19% Similarity=0.174 Sum_probs=161.2
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCC
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 435 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~ 435 (644)
.+..++.+||+++....+..++... ...|+||+||||||||++++.||+.+ +..++.++++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~--------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR--------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC--------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 3457899999998888775544221 23579999999999999999999987 66788888766
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-
Q 006458 436 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP- 511 (644)
Q Consensus 436 l~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~- 511 (644)
+. .+.++....+..+|+.+... .++||||||+|.|++.+.....+......|... + ..+.+.+|++||..
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~---l--~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPA---L--SSGKLRCIGSTTYEE 322 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHH---H--hCCCeEEEEecCHHH
Confidence 54 35567788999999988765 478999999999987653322222223333333 3 35779999999863
Q ss_pred ----CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006458 512 ----GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 587 (644)
Q Consensus 512 ----~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t 587 (644)
...|+++.+|| ..|+|+.|+.+++..||+.....+.... . -.++++.+..++..+
T Consensus 323 ~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~~-----------------~---v~i~~~al~~~~~ls 381 (731)
T TIGR02639 323 YKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEFH-----------------H---VKYSDEALEAAVELS 381 (731)
T ss_pred HHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhcc-----------------C---cccCHHHHHHHHHhh
Confidence 35799999999 5899999999999999998887654211 0 138999999999888
Q ss_pred CCCcHH-----HHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHHH
Q 006458 588 EGFSGR-----EIAKLMASVQAAVYG----SENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 588 ~G~Sgr-----dI~~L~~~~~aa~~~----~~~~~lt~~~~~~al~~~~ 627 (644)
..|-+. ---.|+..+.+...- .....||.+++..++....
T Consensus 382 ~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 382 ARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred hcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 766432 112333322221111 1235689999999988763
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.74 E-value=9.9e-17 Score=172.58 Aligned_cols=207 Identities=25% Similarity=0.323 Sum_probs=152.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+..|+++||++.++..+...+. .+..+..+|||||||+|||++++.+++.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~-------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~ 79 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIK-------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKE 79 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 3456679999999999998876543 23344568999999999999999999987432
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.+++.. ......+..+++.+... ..+.||+|||+|.+. ...++.++..++
T Consensus 80 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll~~le 142 (355)
T TIGR02397 80 INSGSSLDVIEIDAAS-----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALLKTLE 142 (355)
T ss_pred HhcCCCCCEEEeeccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHHHHHh
Confidence 23333321 11233455666655432 235699999999872 235778888888
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
..+.+++||++||.++.+.+.+.+|+ ..++|++|+.++...++..++.+... .++
T Consensus 143 ~~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~------------------------~i~ 197 (355)
T TIGR02397 143 EPPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGI------------------------KIE 197 (355)
T ss_pred CCccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 77888999999999888899999999 78999999999999999999876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++.+..|+..+.| +.+.+.+.+..+. .|.. +.||.+++++++.
T Consensus 198 ~~a~~~l~~~~~g-~~~~a~~~lekl~--~~~~--~~it~~~v~~~~~ 240 (355)
T TIGR02397 198 DEALELIARAADG-SLRDALSLLDQLI--SFGN--GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHH--hhcC--CCCCHHHHHHHhC
Confidence 8999999999865 6666666664332 3433 4589888887764
No 100
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.5e-16 Score=175.68 Aligned_cols=208 Identities=20% Similarity=0.238 Sum_probs=148.6
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC-----------------
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD----------------- 427 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~----------------- 427 (644)
+.+.+|++|||++.++..|...+.. +..+.++|||||||+|||++|+.+|+.+.+.
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 4566899999999999888665532 2334569999999999999999999987432
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS 499 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~ 499 (644)
++.+++.. ..|.+....+...+........+.||||||+|.|. ...++.|+..+++.+
T Consensus 84 i~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LLk~lEep~ 149 (451)
T PRK06305 84 ISSGTSLDVLEIDGAS--HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLLKTLEEPP 149 (451)
T ss_pred HhcCCCCceEEeeccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHHHHhhcCC
Confidence 33333321 12223333333322222222457899999999872 235788888888888
Q ss_pred CCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHH
Q 006458 500 KDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 579 (644)
Q Consensus 500 ~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 579 (644)
.+++||++||.+..+.+.+.+|| .+++|+.++.++...++...+.+... .++++.
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~------------------------~i~~~a 204 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGI------------------------ETSREA 204 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHH
Confidence 89999999999999999999999 88999999999999988888765322 278899
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 580 LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 580 l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
+..|+..+.| +.+.+..++..+. .+.. ..||.+++..++
T Consensus 205 l~~L~~~s~g-dlr~a~~~Lekl~--~~~~--~~It~~~V~~l~ 243 (451)
T PRK06305 205 LLPIARAAQG-SLRDAESLYDYVV--GLFP--KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH--Hhcc--CCcCHHHHHHHH
Confidence 9999999866 6666666654332 2322 347887776654
No 101
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.2e-16 Score=180.18 Aligned_cols=206 Identities=23% Similarity=0.269 Sum_probs=152.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+..|++|||++.++..|...+.. +..+..+|||||||+|||++|+.||+.+++.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 45677899999999999988765532 2333469999999999999999999998642
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.+++.. ......++.+...+. ...++.|+||||+|.|. ...++.||..++
T Consensus 82 i~~~~~~dv~~idgas-----~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK~LE 144 (563)
T PRK06647 82 IDNDNSLDVIEIDGAS-----NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLKTIE 144 (563)
T ss_pred HHcCCCCCeEEecCcc-----cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHHhhc
Confidence 22222211 112334444443332 23457899999999872 346888999999
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
..+..++||++|+.+..+.+++++|| ..++|.+++.+++..++...+..... .++
T Consensus 145 epp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi------------------------~id 199 (563)
T PRK06647 145 EPPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQI------------------------KYE 199 (563)
T ss_pred cCCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88899999999998899999999999 78999999999999988887765321 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
++.+..|+..+.| +.|++..++.. .+.+.. +.+|.+++..++
T Consensus 200 ~eAl~lLa~~s~G-dlR~alslLdk--lis~~~--~~It~e~V~~ll 241 (563)
T PRK06647 200 DEALKWIAYKSTG-SVRDAYTLFDQ--VVSFSD--SDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHH--HHhhcC--CCCCHHHHHHHh
Confidence 9999999999876 77888887763 334433 568887777654
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.1e-16 Score=174.86 Aligned_cols=210 Identities=20% Similarity=0.216 Sum_probs=151.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+..|++|||++.+++.|...+. .+..+..+|||||||||||++|+.+|+.+.+.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 4566789999999999998866543 23333459999999999999999999998652
Q ss_pred ----------------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHH
Q 006458 428 ----------------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSAL 488 (644)
Q Consensus 428 ----------------~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l 488 (644)
++.+++. .......++.+...+. ...++.||||||+|.|. ...+
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~-----~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~~~~ 144 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAA-----SNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------IAAF 144 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeeccc-----ccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------HHHH
Confidence 1111111 1111344444444442 22346799999999972 2356
Q ss_pred HHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhh
Q 006458 489 NALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQ 568 (644)
Q Consensus 489 ~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 568 (644)
+.|+..+++.+..++||++|+.+..+.+.+.+|+ .+++|++++.++....+...+.....
T Consensus 145 ~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~------------------- 204 (397)
T PRK14955 145 NAFLKTLEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGI------------------- 204 (397)
T ss_pred HHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCC-------------------
Confidence 7788888888888899988888888999999999 78999999999999888888765321
Q ss_pred hhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC-CCCCccCHHHHHHHH
Q 006458 569 KIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG-SENCVLDPSLFREVV 623 (644)
Q Consensus 569 ~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~-~~~~~lt~~~~~~al 623 (644)
.++++.+..|+..+.| +.+.+..++..+...+.. .+...||.++++.++
T Consensus 205 -----~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 205 -----SVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred -----CCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 2899999999999866 677777776644433321 234688988887765
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.4e-16 Score=170.59 Aligned_cols=212 Identities=21% Similarity=0.256 Sum_probs=150.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCC-------CC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGG-------DV 436 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~-------~l 436 (644)
.+.+.+|++++|++.+.+.+...+.. +..+.++|||||||+|||++++.+++.++.+.....+. ++
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 45667899999999998887665432 33446799999999999999999999885422111110 00
Q ss_pred CCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC
Q 006458 437 APLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 513 (644)
Q Consensus 437 ~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ 513 (644)
..........+..++..+.. ..++.||||||+|.+. ...++.++..++..+..++||++|+.+..
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 11111223455566655432 2345799999999862 12467777777777778889999988899
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+++.+|+ .++.|++|+.++...++...+.+... .++++.+..|+..+.| +.+
T Consensus 151 l~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~------------------------~i~~~al~~l~~~~~g-dlr 204 (367)
T PRK14970 151 IIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGI------------------------KFEDDALHIIAQKADG-ALR 204 (367)
T ss_pred CCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhCCC-CHH
Confidence 999999999 78999999999999999988876432 1789999999999855 666
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
.+...+..+. .|... . ||.++++.++.
T Consensus 205 ~~~~~lekl~--~y~~~-~-it~~~v~~~~~ 231 (367)
T PRK14970 205 DALSIFDRVV--TFCGK-N-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHH--HhcCC-C-CCHHHHHHHhC
Confidence 6666665333 23222 2 88888877754
No 104
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=3.1e-16 Score=177.95 Aligned_cols=215 Identities=21% Similarity=0.253 Sum_probs=153.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEE----------EeC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYAL----------MTG 433 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~----------i~~ 433 (644)
.+.+.+|++|||++.++..|...+.. +.-+..+||+||+|||||++|+.+|+.+++.-.. -.|
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~-------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRM-------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 45677899999999999988664422 2333459999999999999999999998652100 001
Q ss_pred C------------CC--CCC---chhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHH
Q 006458 434 G------------DV--APL---GPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 493 (644)
Q Consensus 434 ~------------~l--~~~---g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~ 493 (644)
+ .+ ..+ .......++.+...+. ....+.|+||||+|.|. ...++.|+.
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~naLLK 149 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFNAFLK 149 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHHHHHH
Confidence 0 11 001 0111334555444442 23346799999999972 235788999
Q ss_pred HhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhcc
Q 006458 494 RTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573 (644)
Q Consensus 494 ~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (644)
.+++.+..++||++|+.+..+.+.|.+|+ .+++|..++.++....+...+.....
T Consensus 150 ~LEePp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi------------------------ 204 (620)
T PRK14954 150 TLEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGI------------------------ 204 (620)
T ss_pred HHhCCCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCC------------------------
Confidence 99988888999998888899999999999 99999999999998888888765322
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC-CCCCccCHHHHHHHH
Q 006458 574 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG-SENCVLDPSLFREVV 623 (644)
Q Consensus 574 ~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~-~~~~~lt~~~~~~al 623 (644)
.++++.++.|+..+.| +.+++..++..+.....+ .+...||.+++.+++
T Consensus 205 ~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 205 QIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred CCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 2889999999999866 677777776644333211 234678888887765
No 105
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.72 E-value=3.5e-16 Score=165.61 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=141.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~~l~~ 438 (644)
.+.|..|++++|++.+...+...+.. + ..+++|||||||||||++++.+++.+. ..++.+++++...
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~-------~-~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE-------K-NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC-------C-CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 45566799999999998888766531 1 123599999999999999999999873 2344554433221
Q ss_pred CchhHHHHHHHH-HHHHHhc----CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC
Q 006458 439 LGPQAVTKIHQL-FDWAKKS----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 ~g~~~~~~l~~~-f~~a~~~----~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ 513 (644)
.. .+... ...+... ..+.||||||+|.+.. .. .+.|+..++....++.+|+++|.+..
T Consensus 82 --~~---~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------~~---~~~L~~~le~~~~~~~lIl~~~~~~~ 144 (319)
T PRK00440 82 --ID---VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------DA---QQALRRTMEMYSQNTRFILSCNYSSK 144 (319)
T ss_pred --hH---HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------HH---HHHHHHHHhcCCCCCeEEEEeCCccc
Confidence 11 11112 2222211 2356999999998722 22 33444445555667888889998888
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+.+.+|+ .+++|++|+.++...+++.++.+... .++++.+..|+..+.| +.|
T Consensus 145 l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~------------------------~i~~~al~~l~~~~~g-d~r 198 (319)
T PRK00440 145 IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGI------------------------EITDDALEAIYYVSEG-DMR 198 (319)
T ss_pred cchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CHH
Confidence 889999999 67999999999999999998876432 2789999999998765 444
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
.++..++.+... ...||.+++..++..
T Consensus 199 ---~~~~~l~~~~~~--~~~it~~~v~~~~~~ 225 (319)
T PRK00440 199 ---KAINALQAAAAT--GKEVTEEAVYKITGT 225 (319)
T ss_pred ---HHHHHHHHHHHc--CCCCCHHHHHHHhCC
Confidence 444434433332 367899988887643
No 106
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.72 E-value=2.2e-16 Score=177.91 Aligned_cols=220 Identities=20% Similarity=0.236 Sum_probs=149.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTG 433 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~ 433 (644)
...+.+|++++|++...+.+...+. ...+.++||+||||||||++|+++.+.+ +.+|+.++|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~--------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~ 129 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALC--------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDA 129 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHh--------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcc
Confidence 3567789999999999888864321 1123579999999999999999997642 357888987
Q ss_pred CCCC--C--CchhHHHHHHH-------HHH---------HHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHH
Q 006458 434 GDVA--P--LGPQAVTKIHQ-------LFD---------WAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 493 (644)
Q Consensus 434 ~~l~--~--~g~~~~~~l~~-------~f~---------~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~ 493 (644)
.... . +.....+..+. .|. .+.....+++|||||++.| +...+..|..++.
T Consensus 130 ~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L---------~~~~q~~LL~~Le 200 (531)
T TIGR02902 130 TTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL---------HPVQMNKLLKVLE 200 (531)
T ss_pred ccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC---------CHHHHHHHHHHHH
Confidence 6321 0 00000000000 000 0111223689999999997 3344444444443
Q ss_pred Hh-------------------------CCCCCCEEEEE-EeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHH
Q 006458 494 RT-------------------------GDQSKDIVLAL-ATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 494 ~~-------------------------~~~~~~viiI~-ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
.- ...+.++.+|+ |+|.++.+++++++|| ..+.|++++.+++..|++..+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~ 279 (531)
T TIGR02902 201 DRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKI 279 (531)
T ss_pred hCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHc
Confidence 21 01123456665 5678999999999999 788999999999999999988764
Q ss_pred hhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 548 IAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.. .++++.++.|+.++. ++|++.+++..+...+...+...||.+++..++....
T Consensus 280 ~i------------------------~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 280 GI------------------------NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred CC------------------------CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 32 278999999888764 7899999997655445545557899999999987543
No 107
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=2.6e-16 Score=170.40 Aligned_cols=181 Identities=23% Similarity=0.323 Sum_probs=129.9
Q ss_pred CCCccccChHHHHHHHHHHHHhhc-hhccC-CCCccEEEecCCCCChHHHHHHHHHHcCCCe------------------
Q 006458 369 GFGDVILHPSLQKRIRQLSGATAN-TKAHN-APFRNMLFYGPPGTGKTMAARELARKSGLDY------------------ 428 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~-~~~~~-~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~------------------ 428 (644)
.|++|+|++.+++.|...+..... ....+ ..+..+||+||||+|||++|+.+|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 489999999999999887765332 11112 2345699999999999999999999874431
Q ss_pred -----EEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCC
Q 006458 429 -----ALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSK 500 (644)
Q Consensus 429 -----~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~ 500 (644)
..+.... ... ....++.++..+... .++.|+||||+|.|. ....|.||+.+++.+.
T Consensus 83 ~hpD~~~i~~~~-~~i---~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep~~ 146 (394)
T PRK07940 83 THPDVRVVAPEG-LSI---GVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEPPP 146 (394)
T ss_pred CCCCEEEecccc-ccC---CHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcCCC
Confidence 1111110 111 244567777766542 245799999999972 2345888888888888
Q ss_pred CEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHH
Q 006458 501 DIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDIL 580 (644)
Q Consensus 501 ~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 580 (644)
+++||++|+.++.+.|.++||| ..++|++|+.++...+|.... .++++.+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~-----------------------------~~~~~~a 196 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD-----------------------------GVDPETA 196 (394)
T ss_pred CCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc-----------------------------CCCHHHH
Confidence 8999998888999999999999 899999999999777665221 1455666
Q ss_pred HHHHHHcCCCcHHHH
Q 006458 581 MEAAAKTEGFSGREI 595 (644)
Q Consensus 581 ~~LA~~t~G~SgrdI 595 (644)
..++..+.|..++.+
T Consensus 197 ~~la~~s~G~~~~A~ 211 (394)
T PRK07940 197 RRAARASQGHIGRAR 211 (394)
T ss_pred HHHHHHcCCCHHHHH
Confidence 777777777665443
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.71 E-value=5.5e-16 Score=157.47 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=132.9
Q ss_pred cCCCCCCccc-c-ChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC---CCeEEEeCCCCCCC
Q 006458 365 KNGNGFGDVI-L-HPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPL 439 (644)
Q Consensus 365 ~~~~~~~~vi-g-~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---~~~~~i~~~~l~~~ 439 (644)
.+..+|++++ | +..+...+..+. ... ...+++||||||||||+|++++++.+. ..+.+++.......
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~---~~~-----~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNAL---RQE-----HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF 87 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHH---hCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh
Confidence 4556799998 3 333333333332 111 224699999999999999999998763 44555554332211
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCC---CC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN-RPGD---LD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN-~~~~---ld 515 (644)
...+++... ...+|||||++.+..+. .....+..++...- ..+++.+|+||+ .|.. +.
T Consensus 88 -------~~~~~~~~~---~~dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~-e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 88 -------VPEVLEGME---QLSLVCIDNIECIAGDE-------LWEMAIFDLYNRIL-ESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred -------hHHHHHHhh---hCCEEEEeChhhhcCCH-------HHHHHHHHHHHHHH-HcCCCeEEEeCCCChHHcCccc
Confidence 112222222 24699999999874321 22222333332221 133334555554 4444 57
Q ss_pred HHHhcccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+.+||. .++.+.+|+.+++..+++..+..... .++++.++.|+.++.| +.|
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~------------------------~l~~~v~~~L~~~~~~-d~r 204 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF------------------------ELPEDVGRFLLKRLDR-EMR 204 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhhcC-CHH
Confidence 99999995 89999999999999999886654321 2899999999999977 788
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
.+..++..+..++.. ....||..++.+++.
T Consensus 205 ~l~~~l~~l~~~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 205 TLFMTLDQLDRASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHHHHHHHh-cCCCCCHHHHHHHHc
Confidence 888888766534332 235699999988764
No 109
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.71 E-value=2.8e-16 Score=161.36 Aligned_cols=224 Identities=22% Similarity=0.276 Sum_probs=148.9
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC---eEEEeCCCCCCCchh
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAPLGPQ 442 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---~~~i~~~~l~~~g~~ 442 (644)
.+.+++++||+.++... ..+++..... ...++++||||||||||+||+.|+.....+ |+.++... .
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq----~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~------a 201 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ----NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN------A 201 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc----CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc------c
Confidence 45678999999988766 3333332111 123579999999999999999999988655 44443322 2
Q ss_pred HHHHHHHHHHHHHhc----CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCCH
Q 006458 443 AVTKIHQLFDWAKKS----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLDS 516 (644)
Q Consensus 443 ~~~~l~~~f~~a~~~----~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt--N~~~~ld~ 516 (644)
....++.+|..+++. ++..|||||||++|- +.....||-.+ ..+.+++|++| |..-.++.
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN------------ksQQD~fLP~V--E~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN------------KSQQDTFLPHV--ENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh------------hhhhhccccee--ccCceEEEecccCCCccchhH
Confidence 245667777777652 346899999999972 22233444434 56778899855 55668999
Q ss_pred HHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHH
Q 006458 517 AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIA 596 (644)
Q Consensus 517 al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~ 596 (644)
+|++|| .++.+..++.+....||..-+..+....... ..+ ++ ..-.+++..++.|+..++|-..+.|.
T Consensus 268 aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~-~~l--------~n--~s~~ve~siidyla~lsdGDaR~aLN 335 (554)
T KOG2028|consen 268 ALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPT-DPL--------PN--SSMFVEDSIIDYLAYLSDGDARAALN 335 (554)
T ss_pred HHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccC-CCC--------CC--cchhhhHHHHHHHHHhcCchHHHHHH
Confidence 999999 8999999999999999998766543110000 000 01 00127889999999999996666565
Q ss_pred HHHHHHHHHH--hC-CCCCccCHHHHHHHHHHH
Q 006458 597 KLMASVQAAV--YG-SENCVLDPSLFREVVDYK 626 (644)
Q Consensus 597 ~L~~~~~aa~--~~-~~~~~lt~~~~~~al~~~ 626 (644)
.|-.++-... .+ +.+..|+.+++.+.+...
T Consensus 336 ~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 336 ALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 5543322221 11 245689999999988764
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=4.6e-16 Score=177.59 Aligned_cols=207 Identities=19% Similarity=0.225 Sum_probs=151.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCe---------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY--------------- 428 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~--------------- 428 (644)
.+.+.+|++|||++.++..|...+.. +.....+|||||||||||++|+.+|+.+++..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~-------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE-------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 35667899999999999998765533 22234579999999999999999999875321
Q ss_pred ----------EEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh
Q 006458 429 ----------ALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 495 (644)
Q Consensus 429 ----------~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~ 495 (644)
+.++.+. .. ....++.+...+.. ...+.||||||+|.|. ...++.||..+
T Consensus 82 ~i~~~~~~d~~~i~~~~--~~---~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLLk~L 144 (585)
T PRK14950 82 AIAEGSAVDVIEMDAAS--HT---SVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALLKTL 144 (585)
T ss_pred HHhcCCCCeEEEEeccc--cC---CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHHHHH
Confidence 1222110 11 12334444433332 2346799999999872 24578888888
Q ss_pred CCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCC
Q 006458 496 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 575 (644)
Q Consensus 496 ~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (644)
++...+++||++++..+.+.+.+.+|+ ..+.|+.++..+...++..++..... .+
T Consensus 145 Eepp~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl------------------------~i 199 (585)
T PRK14950 145 EEPPPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGI------------------------NL 199 (585)
T ss_pred hcCCCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888888999999988888999999999 78999999999999999888876432 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 576 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 576 ~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
+++.+..|+..+.| +.+++.+++..+.. |. +..||.++++.++.
T Consensus 200 ~~eal~~La~~s~G-dlr~al~~LekL~~--y~--~~~It~e~V~~ll~ 243 (585)
T PRK14950 200 EPGALEAIARAATG-SMRDAENLLQQLAT--TY--GGEISLSQVQSLLG 243 (585)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHHH--hc--CCCCCHHHHHHHhc
Confidence 88999999999876 88888888764433 43 35789888876544
No 111
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=6.9e-16 Score=175.97 Aligned_cols=205 Identities=21% Similarity=0.281 Sum_probs=150.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+..|++++|++.+...|...+... .-..++|||||+|||||++|+.+|+.+++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 345667999999999999987765432 223469999999999999999999998652
Q ss_pred ----------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH
Q 006458 428 ----------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 494 (644)
Q Consensus 428 ----------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~ 494 (644)
++.++. ........++.++..+... .++.||||||+|.|. ...++.||..
T Consensus 82 ~~i~~g~h~D~~ei~~-----~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~ 144 (620)
T PRK14948 82 RAIAAGNALDVIEIDA-----ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKT 144 (620)
T ss_pred HHHhcCCCccEEEEec-----cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHH
Confidence 112211 1122345666776665432 346799999999972 3467888999
Q ss_pred hCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 495 TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 495 ~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
+++...+++||++|+.+..+.+.|++|| ..++|..++.++....+...+.+... .
T Consensus 145 LEePp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi------------------------~ 199 (620)
T PRK14948 145 LEEPPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESI------------------------E 199 (620)
T ss_pred HhcCCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCC------------------------C
Confidence 9988899999999999999999999999 88999999999888888877765322 2
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
++++.+..|+..+.| +.+++..++..+. .+. +.||.++++..+
T Consensus 200 is~~al~~La~~s~G-~lr~A~~lLekls--L~~---~~It~e~V~~lv 242 (620)
T PRK14948 200 IEPEALTLVAQRSQG-GLRDAESLLDQLS--LLP---GPITPEAVWDLL 242 (620)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHHH--hcc---CCCCHHHHHHHh
Confidence 778899999999876 5566666665332 121 357776666543
No 112
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.70 E-value=5.3e-16 Score=168.02 Aligned_cols=239 Identities=18% Similarity=0.246 Sum_probs=149.7
Q ss_pred CccccChHHHHHHHHHH-HHhhchhc---cC------CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC--
Q 006458 371 GDVILHPSLQKRIRQLS-GATANTKA---HN------APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-- 438 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~-~~~~~~~~---~~------~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-- 438 (644)
+.|||++.+++.+...+ +....... .. .+..+|||+||||||||++|++||..++.+|+.+++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 44689999999885533 22221111 01 12368999999999999999999999999999998877653
Q ss_pred -CchhHHHHHHHHHHHH---HhcCCCeEEEEeccchhhhccccCcC-----CHHHHHHHHHHHHHhC----------CCC
Q 006458 439 -LGPQAVTKIHQLFDWA---KKSKRGLLLFIDEADAFLCERNKTYM-----SEAQRSALNALLFRTG----------DQS 499 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a---~~~~~~~VL~IDEid~l~~~r~~~~~-----~~~~~~~l~~lL~~~~----------~~~ 499 (644)
.|.+....+..++..+ .....++||||||+|++.+++.+... .+..+..|..+|...- ..+
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 2333333444433321 11234679999999999875433221 1233444444442210 124
Q ss_pred CCEEEEEEeCCC---------------------------C-----------------------CCCHHHhcccceeEecC
Q 006458 500 KDIVLALATNRP---------------------------G-----------------------DLDSAVADRIDEVLEFP 529 (644)
Q Consensus 500 ~~viiI~ttN~~---------------------------~-----------------------~ld~al~~Rfd~~i~~~ 529 (644)
.++++|+|+|.. . .|.|+|++|+|.++.|.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~ 316 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE 316 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC
Confidence 578899998861 0 15589999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCcHHHHHHHHH-HHHHHH
Q 006458 530 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLMA-SVQAAV 606 (644)
Q Consensus 530 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t--~G~SgrdI~~L~~-~~~aa~ 606 (644)
+++.+++.+|+...++.+..+ ...++... ++.+ .++++.+++|+..+ .++..|-|..++. .+....
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq--------~~~~l~~~--gi~L-~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQ--------YQALFKMD--NVEL-DFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHH--------HHHHhccC--CeEE-EECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 999999999998854432211 00111111 2222 38999999999973 4677899999884 334444
Q ss_pred hCCCC------CccCHHHHH
Q 006458 607 YGSEN------CVLDPSLFR 620 (644)
Q Consensus 607 ~~~~~------~~lt~~~~~ 620 (644)
+.-.. .+||.+.+.
T Consensus 386 ~e~p~~~~~~~v~i~~~~v~ 405 (413)
T TIGR00382 386 FDLPSLEDLEKVVITKETVL 405 (413)
T ss_pred hhCCCCCCCcEEEECHHHHc
Confidence 43221 346665553
No 113
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.70 E-value=3.3e-16 Score=170.49 Aligned_cols=238 Identities=20% Similarity=0.276 Sum_probs=146.8
Q ss_pred ccccChHHHHHHHHHH-HHhhchh-------ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC---Cc
Q 006458 372 DVILHPSLQKRIRQLS-GATANTK-------AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LG 440 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~-~~~~~~~-------~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~---~g 440 (644)
.|||++.+++.+...+ +...... ....+..++||+||||||||++|+.||..++.+|+.++++.+.. .|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 4899999999885433 2111111 11124578999999999999999999999999999999987653 23
Q ss_pred hhHHHHHHHHHHHH---HhcCCCeEEEEeccchhhhccccCc-----CCHHHHHHHHHHHHHh-------C---CCCCCE
Q 006458 441 PQAVTKIHQLFDWA---KKSKRGLLLFIDEADAFLCERNKTY-----MSEAQRSALNALLFRT-------G---DQSKDI 502 (644)
Q Consensus 441 ~~~~~~l~~~f~~a---~~~~~~~VL~IDEid~l~~~r~~~~-----~~~~~~~~l~~lL~~~-------~---~~~~~v 502 (644)
.+....+..++..+ .....++||||||||++..+..+.. ..+..+..|..+|... + ....++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 33333344443321 1123578999999999977633221 1123444444444321 0 012345
Q ss_pred EEEEEeCCCC----------------------------------------------------CCCHHHhcccceeEecCC
Q 006458 503 VLALATNRPG----------------------------------------------------DLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 503 iiI~ttN~~~----------------------------------------------------~ld~al~~Rfd~~i~~~~ 530 (644)
++|.|+|... .|.|+|++|+|.++.|.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 6666665400 157899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCcHHHHHHHHH-HHHHHHh
Q 006458 531 PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK--TEGFSGREIAKLMA-SVQAAVY 607 (644)
Q Consensus 531 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~--t~G~SgrdI~~L~~-~~~aa~~ 607 (644)
++.+++.+|+...++.+..+ ...++... ++.+ .++++.+++|++. ..++..|.|..++. .+....+
T Consensus 312 L~~~~L~~Il~~~~~~l~~q--------~~~~l~~~--~i~L-~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 312 LDEEALVRILTEPKNALVKQ--------YQKLFEMD--GVEL-EFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHH--------HHHHHHhC--CcEE-EECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 99999999998543322211 00112111 1222 3899999999997 35666788888883 2233333
Q ss_pred CC------CCCccCHHHHH
Q 006458 608 GS------ENCVLDPSLFR 620 (644)
Q Consensus 608 ~~------~~~~lt~~~~~ 620 (644)
.- ....||.+.+.
T Consensus 381 ~~p~~~~~~~v~I~~~~v~ 399 (412)
T PRK05342 381 ELPSREDVEKVVITKEVVE 399 (412)
T ss_pred hccccCCCceEEECHHHhc
Confidence 11 12456776654
No 114
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.70 E-value=6e-16 Score=178.68 Aligned_cols=218 Identities=22% Similarity=0.283 Sum_probs=141.8
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHH
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 444 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~ 444 (644)
..+.+|++++|++++......+...... ....++|||||||||||++|+++++.++.+|+.+++.... .
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h
Confidence 3456799999999988643333333221 1235799999999999999999999999999888875321 1
Q ss_pred HHHHHHHHHH----HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCCHHH
Q 006458 445 TKIHQLFDWA----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLDSAV 518 (644)
Q Consensus 445 ~~l~~~f~~a----~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt--N~~~~ld~al 518 (644)
..+...+..+ .....+.||||||+|.|. ... .+.|+..++ ...+++|++| |....+++++
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln---------~~q---QdaLL~~lE--~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFN---------KAQ---QDALLPWVE--NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC---------HHH---HHHHHHHhc--CceEEEEEecCCChHhhhhhHh
Confidence 2223333322 222346799999999872 222 334444443 3557777755 3345688999
Q ss_pred hcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHH
Q 006458 519 ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKL 598 (644)
Q Consensus 519 ~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L 598 (644)
++|+ .++.|++++.+++..|++.++.......+.. . ..++++.+..|+..+.| +.|.+..+
T Consensus 157 ~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~--------------~---v~I~deaL~~La~~s~G-D~R~lln~ 217 (725)
T PRK13341 157 VSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDR--------------K---VDLEPEAEKHLVDVANG-DARSLLNA 217 (725)
T ss_pred hccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCc--------------c---cCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 9998 7899999999999999999987532110000 1 13899999999998855 45555555
Q ss_pred HHHHHHHHhCCCC--CccCHHHHHHHHHHH
Q 006458 599 MASVQAAVYGSEN--CVLDPSLFREVVDYK 626 (644)
Q Consensus 599 ~~~~~aa~~~~~~--~~lt~~~~~~al~~~ 626 (644)
+..+......... ..||.+++.+++...
T Consensus 218 Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 218 LELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 5432221111111 237888888877653
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=2.1e-16 Score=175.46 Aligned_cols=222 Identities=15% Similarity=0.197 Sum_probs=145.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAPL 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~~ 439 (644)
.+..+|++++..+.....+..+.....+ ++..+++++||||||||||+|++++++.+ +..++++++.++...
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhC---cCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 4667899987444444333333322222 23345669999999999999999999987 456778887665321
Q ss_pred chhHH--HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CCC---
Q 006458 440 GPQAV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PGD--- 513 (644)
Q Consensus 440 g~~~~--~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~~~--- 513 (644)
..... .....+.. ....++||+|||++.+..+. .....+..++..+-.. +.. +|+|+|. |..
T Consensus 193 ~~~~~~~~~~~~~~~---~~~~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~l~~~-~~~-iiits~~~p~~l~~ 260 (450)
T PRK00149 193 FVNALRNNTMEEFKE---KYRSVDVLLIDDIQFLAGKE-------RTQEEFFHTFNALHEA-GKQ-IVLTSDRPPKELPG 260 (450)
T ss_pred HHHHHHcCcHHHHHH---HHhcCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHC-CCc-EEEECCCCHHHHHH
Confidence 00000 01112222 22236799999999874432 1122222222222112 223 4445554 433
Q ss_pred CCHHHhcccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+++.+.+||. .++.|.+|+.++|..|++..+..... .++++.++.|+..+.| +
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~------------------------~l~~e~l~~ia~~~~~-~ 315 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI------------------------DLPDEVLEFIAKNITS-N 315 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHcCcCC-C
Confidence 7789999994 68999999999999999999876321 2899999999999876 8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.|+|..++..+.+.+... +..||.+++.+++....
T Consensus 316 ~R~l~~~l~~l~~~~~~~-~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 316 VRELEGALNRLIAYASLT-GKPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhh
Confidence 899999887776655433 35699999999998764
No 116
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=1.3e-15 Score=179.65 Aligned_cols=192 Identities=18% Similarity=0.226 Sum_probs=139.8
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC----------CCeEEEeCCC
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----------LDYALMTGGD 435 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~----------~~~~~i~~~~ 435 (644)
.+..++.+||+++...++-.++.. ....|++|+||||||||++++.||+.+. ..++.++.+.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r--------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR--------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc--------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 445799999999876665443311 1224689999999999999999999862 4466666665
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 436 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 436 l~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
+. .+.++....++.+++.+.....++||||||++.|.+.++..+.. . +-+.|+..+ ..+.+.+|+||+..+
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~-d---~~n~Lkp~l--~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-D---AANLLKPAL--ARGELRTIAATTWAE 327 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc-c---HHHHhhHHh--hCCCeEEEEecCHHH
Confidence 53 25667788999999998766667999999999998755432211 1 222333333 467899999988643
Q ss_pred -----CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006458 513 -----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 587 (644)
Q Consensus 513 -----~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t 587 (644)
.+|++|.+|| ..|.|+.|+.+++..||+.+...+....+ + .++|+.+..++..+
T Consensus 328 ~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~-----------------v---~i~d~al~~~~~ls 386 (852)
T TIGR03345 328 YKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHG-----------------V---LILDEAVVAAVELS 386 (852)
T ss_pred HhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCC-----------------C---eeCHHHHHHHHHHc
Confidence 5899999999 68999999999999999877766542211 1 27888888888888
Q ss_pred CCCcH
Q 006458 588 EGFSG 592 (644)
Q Consensus 588 ~G~Sg 592 (644)
.+|-+
T Consensus 387 ~ryi~ 391 (852)
T TIGR03345 387 HRYIP 391 (852)
T ss_pred ccccc
Confidence 77643
No 117
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.70 E-value=1.2e-15 Score=172.61 Aligned_cols=222 Identities=18% Similarity=0.183 Sum_probs=153.9
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCCC
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDVA 437 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l~ 437 (644)
+.-+.|.+.++-...|..++..... +..|...++|+|+||||||.+++.+.+.+ ...+++++|..+.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIk---gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIK---QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHh---cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 3346677777777777665544322 22233345799999999999999998776 2557889986543
Q ss_pred C------------------CchhHHHHHHHHHHHHHh-cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCC
Q 006458 438 P------------------LGPQAVTKIHQLFDWAKK-SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 498 (644)
Q Consensus 438 ~------------------~g~~~~~~l~~~f~~a~~-~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~ 498 (644)
. .|......+..+|..... .....||||||||.|... .+.+|..|+......
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~~s 899 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPTKI 899 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhhcc
Confidence 2 122233445566665432 333579999999998542 235566666655545
Q ss_pred CCCEEEEEEeCC---CCCCCHHHhcccce-eEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 499 SKDIVLALATNR---PGDLDSAVADRIDE-VLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 499 ~~~viiI~ttN~---~~~ld~al~~Rfd~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
...++||+++|. +..+++.+.+||.. .|.|++|+.+++..||+..+.... ..
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~------------------------gV 955 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK------------------------EI 955 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC------------------------CC
Confidence 667999999986 56778899998854 489999999999999999986521 12
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
++++++..+|++.... .+|++..+..+..+.....+..|+.+++.+|++..
T Consensus 956 LdDdAIELIArkVAq~-SGDARKALDILRrAgEikegskVT~eHVrkAleei 1006 (1164)
T PTZ00112 956 IDHTAIQLCARKVANV-SGDIRKALQICRKAFENKRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred CCHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHH
Confidence 8899999999865432 34777777655555544455689999999998765
No 118
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=3.5e-15 Score=161.20 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=147.9
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC---------CCeEEEeCCCCCC
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------LDYALMTGGDVAP 438 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---------~~~~~i~~~~l~~ 438 (644)
+..+.++|.+...+.|..++..... +..+.+++|+||||||||++++.+++.+. ..+++++|.....
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR----GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 3356889998888888766544322 23346799999999999999999998763 4678888865432
Q ss_pred C--------------c-------hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH--h
Q 006458 439 L--------------G-------PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR--T 495 (644)
Q Consensus 439 ~--------------g-------~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~--~ 495 (644)
. + ......+..++.......++.||+|||+|.|.... ..++..++.. .
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~~~~ 158 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRARSN 158 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhccccc
Confidence 1 0 01112234445555445567899999999986211 1245555544 2
Q ss_pred C-CCCCCEEEEEEeCCCC---CCCHHHhcccc-eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhh
Q 006458 496 G-DQSKDIVLALATNRPG---DLDSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 570 (644)
Q Consensus 496 ~-~~~~~viiI~ttN~~~---~ld~al~~Rfd-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (644)
. ....++.+|+++|.++ .+++.+.+||. ..++|++|+.+++..|++..+.....
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~--------------------- 217 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFY--------------------- 217 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhcc---------------------
Confidence 2 2336789999999875 58889999985 67999999999999999998853110
Q ss_pred hccCCCHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 571 EIKGLTDDILMEAAAK---TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 571 ~~~~~~d~~l~~LA~~---t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
...++++.++.++.. +.| ..|.+..+|..+-..+...+...||.+++..+++...
T Consensus 218 -~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 218 -DGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred -CCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 012667766665554 345 3444445554333323334457899999999887764
No 119
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.69 E-value=4.6e-16 Score=170.57 Aligned_cols=222 Identities=15% Similarity=0.197 Sum_probs=143.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~- 438 (644)
.+..+|++++..+........+.....+ ++..+.+++||||||||||+|++++++++ +..++++++.++..
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~---~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhC---cCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 4567899966333333333222222222 23344569999999999999999999887 56788888766432
Q ss_pred CchhH-HHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CC---C
Q 006458 439 LGPQA-VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PG---D 513 (644)
Q Consensus 439 ~g~~~-~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~~---~ 513 (644)
+.... ...+..+.... ...++|+|||++.+.++. .....+..++..+... +..+|+|+|. |. .
T Consensus 181 ~~~~~~~~~~~~~~~~~---~~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKY---RSVDLLLIDDIQFLAGKE-------RTQEEFFHTFNALHEN--GKQIVLTSDRPPKELPG 248 (405)
T ss_pred HHHHHHcCCHHHHHHHH---HhCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhh
Confidence 10000 00111222222 236799999999875432 1222233333332112 2234555554 43 4
Q ss_pred CCHHHhcccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+++.+.+||. .++.|++|+.++|..|++..+..... .++++.++.||..+.| +
T Consensus 249 l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~------------------------~l~~e~l~~ia~~~~~-~ 303 (405)
T TIGR00362 249 LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL------------------------ELPDEVLEFIAKNIRS-N 303 (405)
T ss_pred hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhcCC-C
Confidence 6788999995 58999999999999999999876422 2899999999999866 8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.|+|..++..+.+.+... ...||.+.+..++....
T Consensus 304 ~r~l~~~l~~l~~~a~~~-~~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 304 VRELEGALNRLLAYASLT-GKPITLELAKEALKDLL 338 (405)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhc
Confidence 899999987776655432 36689888888887654
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-15 Score=176.96 Aligned_cols=225 Identities=18% Similarity=0.174 Sum_probs=154.3
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCC
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDV 436 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l 436 (644)
...++.++|.+.....+..++... ...++||+||||||||++++.++..+ +..++.++.+.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~--------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~l 253 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhcc--------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHH
Confidence 345889999888887776654331 22568999999999999999999874 334444443332
Q ss_pred C---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-
Q 006458 437 A---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG- 512 (644)
Q Consensus 437 ~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~- 512 (644)
. .+.++....+..++..+.... ++||||||+|.|++.+..........++|..++ ..+.+.+|++||.++
T Consensus 254 laG~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-----~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 LAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-----SSGKIRVIGSTTYQEF 327 (758)
T ss_pred hcccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-----hCCCeEEEecCChHHH
Confidence 2 134566777888888887554 789999999999876543322223333444444 456799999998764
Q ss_pred ----CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006458 513 ----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 588 (644)
Q Consensus 513 ----~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~ 588 (644)
..|++|.+|| ..|.++.|+.+++..||+.+...|....+. .++++.+..++..+.
T Consensus 328 ~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v--------------------~i~~~al~~a~~ls~ 386 (758)
T PRK11034 328 SNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDV--------------------RYTAKAVRAAVELAV 386 (758)
T ss_pred HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCC--------------------CcCHHHHHHHHHHhh
Confidence 5799999999 589999999999999999988877643211 278888888777665
Q ss_pred CC-----cHHHHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHH
Q 006458 589 GF-----SGREIAKLMASVQAAVYG----SENCVLDPSLFREVVDYK 626 (644)
Q Consensus 589 G~-----SgrdI~~L~~~~~aa~~~----~~~~~lt~~~~~~al~~~ 626 (644)
.| -+.....|+..+-+...- .....++.+++..++...
T Consensus 387 ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 387 KYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred ccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 43 233555555433322211 112458888888887665
No 121
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.69 E-value=1.6e-15 Score=162.23 Aligned_cols=243 Identities=19% Similarity=0.283 Sum_probs=163.2
Q ss_pred CccccChHHHHHHHHHHHHh-hchh-----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC---CCch
Q 006458 371 GDVILHPSLQKRIRQLSGAT-ANTK-----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA---PLGP 441 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~-~~~~-----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~---~~g~ 441 (644)
+.|||++++++.+...+... .... ....+++++||+||||||||+++++||..++.+|+.+++..+. ..|.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 34789999999985533321 1111 1123568999999999999999999999999999999987663 2333
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 006458 442 QAVTKIHQLFDWA------------------------------------------------------------------- 454 (644)
Q Consensus 442 ~~~~~l~~~f~~a------------------------------------------------------------------- 454 (644)
+....++.+|..+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 4444444444333
Q ss_pred ----------------------------------------------------------------------Hh-cCCCeEE
Q 006458 455 ----------------------------------------------------------------------KK-SKRGLLL 463 (644)
Q Consensus 455 ----------------------------------------------------------------------~~-~~~~~VL 463 (644)
.. ....+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 00 1234699
Q ss_pred EEeccchhhhccccCcCCHHHHHHHHHHHHHhCC----------CCCCEEEEEEe----CCCCCCCHHHhcccceeEecC
Q 006458 464 FIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVLEFP 529 (644)
Q Consensus 464 ~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----------~~~~viiI~tt----N~~~~ld~al~~Rfd~~i~~~ 529 (644)
||||||+++.+..+......-..+...||..++. ...+++||++. ..|.++-|.|..||+.++.+.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 9999999987653222122223456666665542 45678888864 347789999999999999999
Q ss_pred CCCHHHHHHHH----HHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc-------CCCcHHHHHHH
Q 006458 530 LPGQEERFKLL----KLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-------EGFSGREIAKL 598 (644)
Q Consensus 530 ~p~~~er~~Il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-------~G~SgrdI~~L 598 (644)
.++.++..+|| ...+.+|..- |+...-.+ .++++.+.+||+.. ++.-.|-|..+
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~L------------f~~egv~L---~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrti 396 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKAL------------MKTEGVNI---EFSDEAIKRIAELAYNVNEKTENIGARRLHTV 396 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHH------------HhhcCcEE---EEeHHHHHHHHHHHHHhcccccccchhhHHHH
Confidence 99999999999 4555665432 22222122 27899999999885 46667888888
Q ss_pred HHH-HHHHHhCCCC-----CccCHHHHHHHHHHHHH
Q 006458 599 MAS-VQAAVYGSEN-----CVLDPSLFREVVDYKVA 628 (644)
Q Consensus 599 ~~~-~~aa~~~~~~-----~~lt~~~~~~al~~~~~ 628 (644)
+.. +.-+.|...+ .+||.+.+...+...+.
T Consensus 397 lE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 397 LERLLEDISFEAPDLSGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHh
Confidence 843 3444443332 57788888777766543
No 122
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.68 E-value=1.4e-15 Score=162.74 Aligned_cols=243 Identities=19% Similarity=0.287 Sum_probs=163.9
Q ss_pred CccccChHHHHHHHHHHHHh-hch-----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC---Cch
Q 006458 371 GDVILHPSLQKRIRQLSGAT-ANT-----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LGP 441 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~-~~~-----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~---~g~ 441 (644)
..|+|++.++..+...+... ... .....++.++||+||||||||++|+.||+.++.+|+.++++.+.. .|.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 44889999999996644321 111 111123589999999999999999999999999999999876653 232
Q ss_pred hHHHHHHHHHHHHH------------------------------------------------------------------
Q 006458 442 QAVTKIHQLFDWAK------------------------------------------------------------------ 455 (644)
Q Consensus 442 ~~~~~l~~~f~~a~------------------------------------------------------------------ 455 (644)
+....++.+|..|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 43444444444440
Q ss_pred ----------------------------------------------------------------------h-cCCCeEEE
Q 006458 456 ----------------------------------------------------------------------K-SKRGLLLF 464 (644)
Q Consensus 456 ----------------------------------------------------------------------~-~~~~~VL~ 464 (644)
. ....+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 1 01246999
Q ss_pred EeccchhhhccccCcCCHHHHHHHHHHHHHhCC----------CCCCEEEEEEe----CCCCCCCHHHhcccceeEecCC
Q 006458 465 IDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 465 IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----------~~~~viiI~tt----N~~~~ld~al~~Rfd~~i~~~~ 530 (644)
|||||+++.+.++......-..+...||..++. +..+++||++. ..|+++-|.|..||+.++.+..
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999987653322122223456666665542 45678888853 3477889999999999999999
Q ss_pred CCHHHHHHHH----HHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc-------CCCcHHHHHHHH
Q 006458 531 PGQEERFKLL----KLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-------EGFSGREIAKLM 599 (644)
Q Consensus 531 p~~~er~~Il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-------~G~SgrdI~~L~ 599 (644)
++.++..+|| ...+.+|..- |+...-.+ .++++.++.||+.+ ++.-.|-|..++
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~L------------f~~egv~L---~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~ 399 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQAL------------LATEGVTL---EFTDDAIRRIAEIAYQVNEKTENIGARRLHTVM 399 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHH------------HhhcCcEE---EEcHHHHHHHHHHHHHhcccccccchhhHHHHH
Confidence 9999999999 5566666532 22221122 27899999999885 366678888888
Q ss_pred HHH-HHHHhCCCC-----CccCHHHHHHHHHHHHH
Q 006458 600 ASV-QAAVYGSEN-----CVLDPSLFREVVDYKVA 628 (644)
Q Consensus 600 ~~~-~aa~~~~~~-----~~lt~~~~~~al~~~~~ 628 (644)
..+ .-..|...+ ..||.+.+...+...+.
T Consensus 400 E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~ 434 (443)
T PRK05201 400 EKLLEDISFEAPDMSGETVTIDAAYVDEKLGDLVK 434 (443)
T ss_pred HHHHHHHhccCCCCCCCEEEECHHHHHHHHHHHHh
Confidence 433 444443332 57788888777665543
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=8e-16 Score=172.32 Aligned_cols=224 Identities=13% Similarity=0.177 Sum_probs=145.3
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~- 438 (644)
.+..+|+++|..+.....+..+.....+. +..++.++|||++|||||+|+++|++.+ +..++++++.++..
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~---~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e 358 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAP---AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE 358 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCc---cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 45568999985544332222222222221 2233459999999999999999999986 46778888766542
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC----CCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP----GDL 514 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~----~~l 514 (644)
+...........|. .+....+||+||||+.+..+. .....|..++..+-+. +..||+|||.+ ..+
T Consensus 359 l~~al~~~~~~~f~--~~y~~~DLLlIDDIq~l~gke-------~tqeeLF~l~N~l~e~--gk~IIITSd~~P~eL~~l 427 (617)
T PRK14086 359 FINSIRDGKGDSFR--RRYREMDILLVDDIQFLEDKE-------STQEEFFHTFNTLHNA--NKQIVLSSDRPPKQLVTL 427 (617)
T ss_pred HHHHHHhccHHHHH--HHhhcCCEEEEehhccccCCH-------HHHHHHHHHHHHHHhc--CCCEEEecCCChHhhhhc
Confidence 11111111111222 223346899999999985432 1122222333333222 22355577764 367
Q ss_pred CHHHhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH
Q 006458 515 DSAVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 592 (644)
Q Consensus 515 d~al~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg 592 (644)
++.|.+|| ..++.+..|+.+.|..||+..+....+ .++++.++.|+.+..+ +.
T Consensus 428 ~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l------------------------~l~~eVi~yLa~r~~r-nv 482 (617)
T PRK14086 428 EDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL------------------------NAPPEVLEFIASRISR-NI 482 (617)
T ss_pred cHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHhccC-CH
Confidence 89999998 678899999999999999998876432 2899999999999866 78
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 593 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 593 rdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
++|..++..+.+.+... ...||.++++.++.....
T Consensus 483 R~LegaL~rL~a~a~~~-~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 483 RELEGALIRVTAFASLN-RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhc
Confidence 89999887775544332 356888888888876543
No 124
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=1.5e-15 Score=152.90 Aligned_cols=204 Identities=17% Similarity=0.234 Sum_probs=136.5
Q ss_pred CCCCCcccc--ChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCch
Q 006458 367 GNGFGDVIL--HPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP 441 (644)
Q Consensus 367 ~~~~~~vig--~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~ 441 (644)
..+|++++. +..+...++.++. .....+++|+||||||||++++.+++.+ +.+++++++..+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~- 81 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA--------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD- 81 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh--------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-
Confidence 346888883 3345555554432 2234579999999999999999999886 4678888876664221
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CCCC---CHH
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PGDL---DSA 517 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~~~l---d~a 517 (644)
..++... ....+|||||+|.+.... .....+..++....... ..+|+|++. +..+ .+.
T Consensus 82 ------~~~~~~~---~~~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~~~--~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 82 ------PEVLEGL---EQADLVCLDDVEAIAGQP-------EWQEALFHLYNRVREAG--GRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred ------HHHHhhc---ccCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcC--CeEEEECCCChHHCCcccHH
Confidence 2222222 235699999999873211 11334444444432222 245556653 3332 278
Q ss_pred Hhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 518 VADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 518 l~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+.+|+ ...|.+++|+.+++..+++.++..... .++++.+..|+..+ +.+.+++
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~------------------------~~~~~~l~~L~~~~-~gn~r~L 198 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL------------------------QLPDEVADYLLRHG-SRDMGSL 198 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhc-cCCHHHH
Confidence 88887 478999999999999999887654321 27899999999975 4489999
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 596 AKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 596 ~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
..++..+..++.. ..+.||.+.+.+++
T Consensus 199 ~~~l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 199 MALLDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 9999777765543 33679999988876
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=1.3e-15 Score=167.89 Aligned_cols=227 Identities=14% Similarity=0.164 Sum_probs=141.9
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchh-ccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCc
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTK-AHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 440 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~-~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g 440 (644)
.+..+|+++|..+........+.....+.. .++.++++++||||||+|||+|++++++.+ +..++++++..+....
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~ 184 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL 184 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH
Confidence 566789999844443333222222222221 223355679999999999999999999876 6778888765543211
Q ss_pred hhHHH-HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-C---CCCC
Q 006458 441 PQAVT-KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-P---GDLD 515 (644)
Q Consensus 441 ~~~~~-~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~---~~ld 515 (644)
..... .-...|... ....+||+|||++.+.++... .+.....+|.+.. .+ ..+|+|||. | ..++
T Consensus 185 ~~~l~~~~~~~f~~~--~~~~dvLiIDDiq~l~~k~~~---qeelf~l~N~l~~-----~~-k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 185 VSAIRSGEMQRFRQF--YRNVDALFIEDIEVFSGKGAT---QEEFFHTFNSLHT-----EG-KLIVISSTCAPQDLKAME 253 (445)
T ss_pred HHHHhcchHHHHHHH--cccCCEEEEcchhhhcCChhh---HHHHHHHHHHHHH-----CC-CcEEEecCCCHHHHhhhH
Confidence 11000 001122221 234689999999987432211 1123333444331 12 356666655 3 3577
Q ss_pred HHHhcccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+.+||. .++.+++|+.++|..||+..+..... .++++.++.|+....+ +.|
T Consensus 254 ~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~------------------------~l~~evl~~la~~~~~-dir 308 (445)
T PRK12422 254 ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI------------------------RIEETALDFLIEALSS-NVK 308 (445)
T ss_pred HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhcCC-CHH
Confidence 89999994 89999999999999999998876422 2899999999998765 667
Q ss_pred HHHHHHHHHH-HHHhC-CCCCccCHHHHHHHHHHHH
Q 006458 594 EIAKLMASVQ-AAVYG-SENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 594 dI~~L~~~~~-aa~~~-~~~~~lt~~~~~~al~~~~ 627 (644)
+|...+..+. ..++. -.+..+|.+++.+++....
T Consensus 309 ~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 309 SLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 7776665442 01221 2335789999999988654
No 126
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.68 E-value=1.4e-14 Score=158.24 Aligned_cols=225 Identities=16% Similarity=0.151 Sum_probs=148.7
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC-----
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP----- 438 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~----- 438 (644)
..+.++|.+.....|..++.... . +..+.+++||||||||||++++.+++.+ +..+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~---~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL---R-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh---C-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 35678888877777766553321 1 2334679999999999999999999887 46788898865422
Q ss_pred --------------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-CCCCEE
Q 006458 439 --------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSKDIV 503 (644)
Q Consensus 439 --------------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-~~~~vi 503 (644)
.+......+..+........++.||+|||+|.+.... ....+..++..... ...++.
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--------~~~~l~~l~~~~~~~~~~~v~ 175 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--------GNDVLYSLLRAHEEYPGARIG 175 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--------CchHHHHHHHhhhccCCCeEE
Confidence 1111122233344444445557899999999986211 11345555554432 233788
Q ss_pred EEEEeCCC---CCCCHHHhcccc-eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHH
Q 006458 504 LALATNRP---GDLDSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 579 (644)
Q Consensus 504 iI~ttN~~---~~ld~al~~Rfd-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 579 (644)
+|+++|.. +.+++.+.+||. ..|+|++++.++...|++..+..-. ....++++.
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~----------------------~~~~~~~~~ 233 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF----------------------YPGVVDDEV 233 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc----------------------ccCCCCHhH
Confidence 89988865 357888888874 6789999999999999998875311 001378889
Q ss_pred HHHHHHHcCCCc--HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 580 LMEAAAKTEGFS--GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 580 l~~LA~~t~G~S--grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
++.+++.+.+.+ .|.+..+|..+...+...+...||.+++..+++...
T Consensus 234 l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 234 LDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 999998884432 344444553322233334457899999999998763
No 127
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.68 E-value=3.9e-15 Score=150.32 Aligned_cols=204 Identities=17% Similarity=0.210 Sum_probs=137.5
Q ss_pred ccCCCCCCccccC--hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILH--PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~--~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~ 438 (644)
..++.+|+++++. ..+...++.+.. ...+..+++|+||||||||++++++++.+ +.+++++++..+..
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~-------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA-------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 3455679998843 344444433322 12233569999999999999999999875 66788888755421
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC---CCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP---GDLD 515 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~---~~ld 515 (644)
.+. ....+.+|||||+|.+. ......+..++..+.. ....++|++++.+ ..+.
T Consensus 84 -----------~~~---~~~~~~~liiDdi~~l~---------~~~~~~L~~~~~~~~~-~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 84 -----------AFD---FDPEAELYAVDDVERLD---------DAQQIALFNLFNRVRA-HGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred -----------HHh---hcccCCEEEEeChhhcC---------chHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHhCCCC
Confidence 111 12236799999999862 1233444445544432 2333455555532 2466
Q ss_pred HHHhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+.+|| ...+++++|+.+++..++..++..... .++++.++.|+..+.| +.+
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v------------------------~l~~~al~~L~~~~~g-n~~ 194 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL------------------------QLADEVPDYLLTHFRR-DMP 194 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhccC-CHH
Confidence 8888888 579999999998888888876655322 2899999999997766 889
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++..++..+...+.. ....||..++.+++.
T Consensus 195 ~l~~~l~~l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 195 SLMALLDALDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCHHHHHHHHh
Confidence 999999877654432 337899999999875
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.8e-15 Score=171.01 Aligned_cols=206 Identities=19% Similarity=0.256 Sum_probs=150.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------- 426 (644)
.+.+.+|++|||++.+...|...+.. +..+..+|||||+|+|||++|+.+|+.+.+
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~-------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT-------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 45667899999999999988665532 333345899999999999999999998753
Q ss_pred --------CeEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh
Q 006458 427 --------DYALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 495 (644)
Q Consensus 427 --------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~ 495 (644)
+++.+++.+ ......+..+...+... ..+.|+||||+|.|. ...++.|+..+
T Consensus 83 ~~~~~~~~n~~~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLLK~L 145 (614)
T PRK14971 83 AFNEQRSYNIHELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFLKTL 145 (614)
T ss_pred HHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHHHHH
Confidence 222332221 11234555555544322 235799999999972 24688899999
Q ss_pred CCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCC
Q 006458 496 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 575 (644)
Q Consensus 496 ~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (644)
+..+.+++||++|+.+..+.+.|++|| .+++|.+++.++....+...+.+..+. +
T Consensus 146 Eepp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~------------------------i 200 (614)
T PRK14971 146 EEPPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGIT------------------------A 200 (614)
T ss_pred hCCCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCC------------------------C
Confidence 888889999999988899999999999 889999999999999999888764322 7
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 576 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 576 ~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
+++.+..|+..+.| +.+++..++..+ +.|... . ||.+++.+.+
T Consensus 201 ~~~al~~La~~s~g-dlr~al~~Lekl--~~y~~~-~-It~~~V~~~l 243 (614)
T PRK14971 201 EPEALNVIAQKADG-GMRDALSIFDQV--VSFTGG-N-ITYKSVIENL 243 (614)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHH--HHhccC-C-ccHHHHHHHh
Confidence 88899999999855 666666666432 233322 2 6666655544
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=99.67 E-value=2.1e-15 Score=153.06 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=136.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCc
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 440 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g 440 (644)
-.+..+|++++.... ......+..... ...+.+.++++||||+|||||+|++++++++ +..+++++..++....
T Consensus 12 ~~~~~tfdnF~~~~~--~~a~~~~~~~~~-~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~ 88 (234)
T PRK05642 12 LRDDATFANYYPGAN--AAALGYVERLCE-ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG 88 (234)
T ss_pred CCCcccccccCcCCh--HHHHHHHHHHhh-ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh
Confidence 355668999984332 112222211111 1112234679999999999999999998764 5677788776654321
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---CCCHH
Q 006458 441 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---DLDSA 517 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~---~ld~a 517 (644)
..+.+... ...+|+|||++.+..+. .....|..++.... ..+..+||.++..|. .+.+.
T Consensus 89 -------~~~~~~~~---~~d~LiiDDi~~~~~~~-------~~~~~Lf~l~n~~~-~~g~~ilits~~~p~~l~~~~~~ 150 (234)
T PRK05642 89 -------PELLDNLE---QYELVCLDDLDVIAGKA-------DWEEALFHLFNRLR-DSGRRLLLAASKSPRELPIKLPD 150 (234)
T ss_pred -------HHHHHhhh---hCCEEEEechhhhcCCh-------HHHHHHHHHHHHHH-hcCCEEEEeCCCCHHHcCccCcc
Confidence 12222222 24699999999874321 22233444443332 223344444433443 34689
Q ss_pred Hhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 518 VADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 518 l~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+.+|| ..++.+..|+.+++..+++..+..... .++++.+++|+.++.| ++|.+
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~------------------------~l~~ev~~~L~~~~~~-d~r~l 205 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL------------------------HLTDEVGHFILTRGTR-SMSAL 205 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhcCC-CHHHH
Confidence 99998 578889999999999999976644211 2899999999999977 88889
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 596 AKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 596 ~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
..++..+..++.. ....||...+++++.
T Consensus 206 ~~~l~~l~~~~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 206 FDLLERLDQASLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHH-cCCcCCHHHHHHHhc
Confidence 8888777554443 236799999998874
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=1.2e-15 Score=168.37 Aligned_cols=222 Identities=14% Similarity=0.187 Sum_probs=142.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAPL 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~~ 439 (644)
.+..+|+++|..+........+.....+ ++ .+.+++||||||||||+|++++++.+ +..++++++.++...
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~---~~-~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~ 174 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKN---PG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhC---cC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 5677899998545444444333322222 22 24569999999999999999999986 456788877664321
Q ss_pred chhHH--HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe-CCCCC---
Q 006458 440 GPQAV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-NRPGD--- 513 (644)
Q Consensus 440 g~~~~--~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt-N~~~~--- 513 (644)
..... ..+..+.... + ..++||+|||++.+.++. ..+..+..++..+.. .+. .+|+|| +.|..
T Consensus 175 ~~~~~~~~~~~~f~~~~-~-~~~dvLlIDDi~~l~~~~-------~~q~elf~~~n~l~~-~~k-~iIitsd~~p~~l~~ 243 (440)
T PRK14088 175 LVDSMKEGKLNEFREKY-R-KKVDVLLIDDVQFLIGKT-------GVQTELFHTFNELHD-SGK-QIVICSDREPQKLSE 243 (440)
T ss_pred HHHHHhcccHHHHHHHH-H-hcCCEEEEechhhhcCcH-------HHHHHHHHHHHHHHH-cCC-eEEEECCCCHHHHHH
Confidence 11110 1111211111 1 237899999999875432 111222222322221 223 455555 44443
Q ss_pred CCHHHhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+.+.+.+|| +.++.|++|+.+.|..|++..+..... .++++.++.|+..+.| +
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~------------------------~l~~ev~~~Ia~~~~~-~ 298 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG------------------------ELPEEVLNFVAENVDD-N 298 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHhcccc-C
Confidence 567888888 458899999999999999998765321 2899999999999876 8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.|+|..++..+.+.+... ...+|.+.+.+++....
T Consensus 299 ~R~L~g~l~~l~~~~~~~-~~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 299 LRRLRGAIIKLLVYKETT-GEEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHh
Confidence 899999997776554432 36799999999888764
No 131
>PRK08727 hypothetical protein; Validated
Probab=99.66 E-value=4e-15 Score=151.02 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=133.5
Q ss_pred cCCCCCCccccChHH-HHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCc
Q 006458 365 KNGNGFGDVILHPSL-QKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 440 (644)
Q Consensus 365 ~~~~~~~~vig~~~~-~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g 440 (644)
.+..+|+++++.+.. ...+..+. . +.....++||||+|||||+++.+++..+ |..+++++..++.
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~---~-----~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--- 81 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALA---A-----GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--- 81 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHH---h-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh---
Confidence 445579999865543 22222221 1 1122449999999999999999997775 5566666643322
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCC---CCH
Q 006458 441 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN-RPGD---LDS 516 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN-~~~~---ld~ 516 (644)
..+...++.. ....+|+|||++.+.... .....+..++..... .+..+|+|+| .|.. +++
T Consensus 82 ----~~~~~~~~~l---~~~dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~~--~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 82 ----GRLRDALEAL---EGRSLVALDGLESIAGQR-------EDEVALFDFHNRARA--AGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred ----hhHHHHHHHH---hcCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHH--cCCeEEEECCCChhhhhhhhH
Confidence 2233333333 336799999999875322 122233344444322 2344666665 4544 479
Q ss_pred HHhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
.+.+|| ..++.|++|+.+++..|++.++..... .++++.+..|+..+.| +.+.
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l------------------------~l~~e~~~~La~~~~r-d~r~ 200 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL------------------------ALDEAAIDWLLTHGER-ELAG 200 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhCCC-CHHH
Confidence 999996 578899999999999999987765321 2899999999999865 4555
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 595 IAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 595 I~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
+..++..+...+... ...||..++.+++..
T Consensus 201 ~l~~L~~l~~~~~~~-~~~it~~~~~~~l~~ 230 (233)
T PRK08727 201 LVALLDRLDRESLAA-KRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHHHHHHHHh-CCCCCHHHHHHHHhh
Confidence 555555554322222 358999999988854
No 132
>PRK06620 hypothetical protein; Validated
Probab=99.66 E-value=4.3e-15 Score=148.62 Aligned_cols=200 Identities=14% Similarity=0.134 Sum_probs=130.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCC-CccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchh
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAP-FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQ 442 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p-~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~ 442 (644)
..+..+|+++|..+.....+..+....... ...| .++++||||||||||+|++++++..+..++ +....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~--~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~------ 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF--GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF------ 78 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc--ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh------
Confidence 456678999986554444444433332211 1123 267999999999999999999998765332 21110
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC--CCHHHhc
Q 006458 443 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD--LDSAVAD 520 (644)
Q Consensus 443 ~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~--ld~al~~ 520 (644)
.... ....++|+|||+|.+ . ...+..++..+.+ .+..++|.++..|.. + +.+++
T Consensus 79 ----~~~~------~~~~d~lliDdi~~~---------~---~~~lf~l~N~~~e-~g~~ilits~~~p~~l~l-~~L~S 134 (214)
T PRK06620 79 ----NEEI------LEKYNAFIIEDIENW---------Q---EPALLHIFNIINE-KQKYLLLTSSDKSRNFTL-PDLSS 134 (214)
T ss_pred ----chhH------HhcCCEEEEeccccc---------h---HHHHHHHHHHHHh-cCCEEEEEcCCCccccch-HHHHH
Confidence 0011 112579999999964 1 1123333333322 334555555544443 5 88999
Q ss_pred ccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHH
Q 006458 521 RID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKL 598 (644)
Q Consensus 521 Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L 598 (644)
|+. .++.+.+|+.+.+..+++..+..... .++++.++.|+.++.| +.|.+..+
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l------------------------~l~~ev~~~L~~~~~~-d~r~l~~~ 189 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSV------------------------TISRQIIDFLLVNLPR-EYSKIIEI 189 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHccC-CHHHHHHH
Confidence 983 38999999999999999988875322 2899999999999876 78888888
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 599 MASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 599 ~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
+..+...+... ...||..++.+++
T Consensus 190 l~~l~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 190 LENINYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHh
Confidence 87765444333 3579999998876
No 133
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=2.4e-15 Score=177.99 Aligned_cols=169 Identities=19% Similarity=0.239 Sum_probs=127.5
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCC
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 435 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~ 435 (644)
.+..++.+||.+....++-.++... ...+++|+||||||||++++.||..+ +.+++.++.+.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~--------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRR--------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcC--------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 3456899999998766665543221 22469999999999999999999987 67788887766
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 436 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 436 l~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
+. .+.++....+..+|+.+.....++||||||+|.|.+.+...+ +......|...+ ..+.+.+|++|+..+
T Consensus 245 l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~~~~lkp~l-----~~g~l~~IgaTt~~e 318 (857)
T PRK10865 245 LVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL-----ARGELHCVGATTLDE 318 (857)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhHHHHhcchh-----hcCCCeEEEcCCCHH
Confidence 53 245667778999998876655689999999999986654332 223334444443 467899999998866
Q ss_pred -----CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhh
Q 006458 513 -----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIA 549 (644)
Q Consensus 513 -----~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~ 549 (644)
.+|+++.+||+ .|.++.|+.+++..||+.+...+..
T Consensus 319 ~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 319 YRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred HHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 48999999995 6889999999999999988776643
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.64 E-value=4.2e-15 Score=149.34 Aligned_cols=200 Identities=19% Similarity=0.284 Sum_probs=120.5
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCCCc
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAPLG 440 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~~g 440 (644)
+..+|+++|-.+.....+..+.....+ ++..+..++||||+|+|||+|.+++++.+ +..++++++.++....
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~---~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~ 79 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN---PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREF 79 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS---TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc---CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHH
Confidence 566899997444333333222222222 22233459999999999999999998875 5667888765553211
Q ss_pred hhHH--HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe-CCCC---CC
Q 006458 441 PQAV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-NRPG---DL 514 (644)
Q Consensus 441 ~~~~--~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt-N~~~---~l 514 (644)
.... ..+..+. ......++|+|||++.+..+. ..+..+..++..+... +. .+|+|+ ..|. .+
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~DlL~iDDi~~l~~~~-------~~q~~lf~l~n~~~~~-~k-~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 80 ADALRDGEIEEFK---DRLRSADLLIIDDIQFLAGKQ-------RTQEELFHLFNRLIES-GK-QLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHTTSHHHHH---HHHCTSSEEEEETGGGGTTHH-------HHHHHHHHHHHHHHHT-TS-EEEEEESS-TTTTTTS
T ss_pred HHHHHcccchhhh---hhhhcCCEEEEecchhhcCch-------HHHHHHHHHHHHHHhh-CC-eEEEEeCCCCcccccc
Confidence 1111 1112222 223347899999999985431 2344444555444323 33 344455 4444 46
Q ss_pred CHHHhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH
Q 006458 515 DSAVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 592 (644)
Q Consensus 515 d~al~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg 592 (644)
++.+.+|| ..++.+.+|+.+.|..|++.++...... ++++.++.|+..+.+ +.
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~------------------------l~~~v~~~l~~~~~~-~~ 202 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE------------------------LPEEVIEYLARRFRR-DV 202 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--------------------------S-HHHHHHHHHHTTS-SH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC------------------------CcHHHHHHHHHhhcC-CH
Confidence 78999998 5688999999999999999999875433 899999999999865 88
Q ss_pred HHHHHHHHHHHHH
Q 006458 593 REIAKLMASVQAA 605 (644)
Q Consensus 593 rdI~~L~~~~~aa 605 (644)
++|..++..+.+.
T Consensus 203 r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 203 RELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888765543
No 135
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=9.6e-15 Score=161.43 Aligned_cols=225 Identities=12% Similarity=0.190 Sum_probs=146.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCCCch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAPLGP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~~g~ 441 (644)
..+|++++..+.....+..+.... ..++.++++++||||+|||||+|++++++.+ +..++++++.++.....
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a---~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVS---KNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHH---hCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 478999985444333332222221 2233445669999999999999999999865 46677888766543211
Q ss_pred hHHHHH-HHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC----CCCCH
Q 006458 442 QAVTKI-HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP----GDLDS 516 (644)
Q Consensus 442 ~~~~~l-~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~----~~ld~ 516 (644)
...... ..+..........+||+|||++.+..+. .....|..++....+..+ .+|+|+|.+ ..+++
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~-------~~~e~lf~l~N~~~~~~k--~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 188 DILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKE-------KTNEIFFTIFNNFIENDK--QLFFSSDKSPELLNGFDN 258 (450)
T ss_pred HHHHHhhhHHHHHHHHhccCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHcCC--cEEEECCCCHHHHhhccH
Confidence 111110 1111112223446799999999874321 223333333333322222 466777653 24678
Q ss_pred HHhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
.+.+|| +.++.+.+|+.++|..||+..+..... . ..++++.+..|+..+.| +.|.
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl---------------------~-~~l~~evl~~Ia~~~~g-d~R~ 315 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI---------------------K-QEVTEEAINFISNYYSD-DVRK 315 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC---------------------C-CCCCHHHHHHHHHccCC-CHHH
Confidence 999998 578899999999999999999875321 0 03899999999999977 8899
Q ss_pred HHHHHHHHHHHHhCCC-CCccCHHHHHHHHHHH
Q 006458 595 IAKLMASVQAAVYGSE-NCVLDPSLFREVVDYK 626 (644)
Q Consensus 595 I~~L~~~~~aa~~~~~-~~~lt~~~~~~al~~~ 626 (644)
|..+|..+...++... ...||.+++.+++...
T Consensus 316 L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 316 IKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999977765555432 3679999999988764
No 136
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.63 E-value=6e-14 Score=144.44 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=102.9
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------------CCCCCHHHhcccceeEe
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------PGDLDSAVADRIDEVLE 527 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~------------~~~ld~al~~Rfd~~i~ 527 (644)
|+||||||++.| +-....+||. .++.... .+||++||+ |..++..|++|+ .+|.
T Consensus 292 pGVLFIDEvHmL---------DIE~FsFlnr---AlEse~a-PIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~ 357 (450)
T COG1224 292 PGVLFIDEVHML---------DIECFSFLNR---ALESELA-PIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIIS 357 (450)
T ss_pred cceEEEechhhh---------hHHHHHHHHH---HhhcccC-cEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEe
Confidence 579999999986 2223333333 3444444 467778885 778999999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 006458 528 FPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 607 (644)
Q Consensus 528 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~ 607 (644)
..+++.++...|++..+....+. ++++.++.|+.....-|-|--.+|+.-+.-.+.
T Consensus 358 t~py~~~EireIi~iRa~ee~i~------------------------l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~ 413 (450)
T COG1224 358 TRPYSREEIREIIRIRAKEEDIE------------------------LSDDALEYLTDIGEETSLRYAVQLLTPASIIAK 413 (450)
T ss_pred cCCCCHHHHHHHHHHhhhhhccc------------------------cCHHHHHHHHhhchhhhHHHHHHhccHHHHHHH
Confidence 99999999999999998765433 899999999999877888888888865555555
Q ss_pred CCCCCccCHHHHHHHHHHHHHhH
Q 006458 608 GSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 608 ~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
.+++..+..++++.+.+.+....
T Consensus 414 ~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 414 RRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred HhCCCeeehhHHHHHHHHHhhHH
Confidence 56668999999999988876543
No 137
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.62 E-value=3.1e-15 Score=145.67 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=142.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-CC----CeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-GL----DYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-~~----~~~~i~~~~l~~ 438 (644)
.+.+..+.++||+++...++.-+... + ..+|++|.||||||||+.+.+||+.+ |. -+..+|.++-.
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR- 90 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER- 90 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc-
Confidence 45566689999999999999776532 2 23479999999999999999999986 42 35667776643
Q ss_pred CchhHHHHHHHHHHHHHhcCC---CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKR---GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~---~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld 515 (644)
|.+.+..-.+.|..-+-.-| ..||+|||+|.+. ...++.+... ++-+++.+.|.++||....+-
T Consensus 91 -GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT---------~gAQQAlRRt---MEiyS~ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 91 -GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT---------AGAQQALRRT---MEIYSNTTRFALACNQSEKII 157 (333)
T ss_pred -ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh---------hHHHHHHHHH---HHHHcccchhhhhhcchhhhh
Confidence 44555555555654443333 3699999999973 2334444443 344567788999999999999
Q ss_pred HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 516 ~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
.++.+|| -++.|...+..+...-|....+.. ++ .++++.++.|.--.+| |+
T Consensus 158 EPIQSRC-AiLRysklsd~qiL~Rl~~v~k~E---------------------kv---~yt~dgLeaiifta~G----DM 208 (333)
T KOG0991|consen 158 EPIQSRC-AILRYSKLSDQQILKRLLEVAKAE---------------------KV---NYTDDGLEAIIFTAQG----DM 208 (333)
T ss_pred hhHHhhh-HhhhhcccCHHHHHHHHHHHHHHh---------------------CC---CCCcchHHHhhhhccc----hH
Confidence 9999999 888898888877655444444322 12 2788999999988777 89
Q ss_pred HHHHHHHHHHHhCC
Q 006458 596 AKLMASVQAAVYGS 609 (644)
Q Consensus 596 ~~L~~~~~aa~~~~ 609 (644)
++.++.+|+.+.+-
T Consensus 209 RQalNnLQst~~g~ 222 (333)
T KOG0991|consen 209 RQALNNLQSTVNGF 222 (333)
T ss_pred HHHHHHHHHHhccc
Confidence 99998889888654
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.62 E-value=8.5e-15 Score=173.93 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=125.6
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCC
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 435 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~ 435 (644)
.+..++.+||.++....+..++.. ....+++|+||||||||++++.||..+ +.+++.++.+.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 345689999999876666554322 123568999999999999999999986 56777777665
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 436 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 436 l~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
+. .+.++....+..+|..+.....++||||||+|.|++.+...+ + ..+.+.|...+ ..+.+.+|++||..+
T Consensus 240 l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~---~d~~~~Lk~~l--~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 240 LIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-A---MDAGNMLKPAL--ARGELHCIGATTLDE 313 (852)
T ss_pred HhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-h---hHHHHHhchhh--hcCceEEEEeCcHHH
Confidence 52 345567778899998887665689999999999976443222 1 12333333323 456799999988763
Q ss_pred -----CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhh
Q 006458 513 -----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQ 550 (644)
Q Consensus 513 -----~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~ 550 (644)
.+|+++.+|| ..|.++.|+.+++..||+.+...+...
T Consensus 314 ~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~ 355 (852)
T TIGR03346 314 YRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVH 355 (852)
T ss_pred HHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccc
Confidence 5799999999 568999999999999999887776543
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.61 E-value=3.2e-14 Score=142.08 Aligned_cols=197 Identities=21% Similarity=0.338 Sum_probs=139.5
Q ss_pred cCCCCCCccccChHHHHHHHH-HHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCc
Q 006458 365 KNGNGFGDVILHPSLQKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 440 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~-l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g 440 (644)
..+..+++++|.+..++.|.. ..... .+.|..|+||||++|||||++++++...+ |..++.+...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl-----~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~--- 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL-----QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG--- 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH-----cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---
Confidence 345568999999998888843 32222 45677899999999999999999999887 5677777665543
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH-hCCCCCCEEEEEEeCCCCC------
Q 006458 441 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQSKDIVLALATNRPGD------ 513 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~-~~~~~~~viiI~ttN~~~~------ 513 (644)
.+..+++.....+..-|||+||+.- . ..+.....|..+|.. +...+.|++|.+|||+-..
T Consensus 93 -----~l~~l~~~l~~~~~kFIlf~DDLsF--e------~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 93 -----DLPELLDLLRDRPYKFILFCDDLSF--E------EGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred -----cHHHHHHHHhcCCCCEEEEecCCCC--C------CCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhh
Confidence 4555777776666678999999752 1 122445667777765 3567899999999997321
Q ss_pred ---------CC--------HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 514 ---------LD--------SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 514 ---------ld--------~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
+. -+|-+||+.+|.|.+|+.++-.+|++.++.++.+.... ..+.
T Consensus 160 d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~-------------------e~l~ 220 (249)
T PF05673_consen 160 DREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDE-------------------EELR 220 (249)
T ss_pred hccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCH-------------------HHHH
Confidence 21 15557999999999999999999999999887543100 0122
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASV 602 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~ 602 (644)
...+.+...+ .|.|||--.+.+..+
T Consensus 221 ~~Al~wa~~r-g~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 221 QEALQWALRR-GGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 3344444433 478999888777644
No 140
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.1e-14 Score=165.69 Aligned_cols=195 Identities=22% Similarity=0.228 Sum_probs=150.2
Q ss_pred hhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHH-HHHHhhchhc
Q 006458 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQ-LSGATANTKA 395 (644)
Q Consensus 317 ~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~-l~~~~~~~~~ 395 (644)
+..+...+.+|+| +|.......+...|..|...| -+.|+||+++...|.. +..+......
T Consensus 527 ~~~i~~~~s~~tg------------ip~~~~~~~e~~~l~~L~~~L-------~~~V~gQ~eAv~aIa~AI~~sr~gl~~ 587 (898)
T KOG1051|consen 527 ESDISEVVSRWTG------------IPVDRLAEAEAERLKKLEERL-------HERVIGQDEAVAAIAAAIRRSRAGLKD 587 (898)
T ss_pred ccchhhhhhhhcC------------CchhhhhhhHHHHHHHHHHHH-------HhhccchHHHHHHHHHHHHhhhcccCC
Confidence 4467777888888 676666666667788888888 7899999999999966 4444444444
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC-----------CCCchhHHHHHHHHHHHHHhcCCCe
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV-----------APLGPQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l-----------~~~g~~~~~~l~~~f~~a~~~~~~~ 461 (644)
+ .|...|||.||.|||||.+|++||..+ ...++.++++.+ ++.|....+ .+..+.+.+|++
T Consensus 588 ~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg----~LteavrrrP~s 662 (898)
T KOG1051|consen 588 P-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG----QLTEAVKRRPYS 662 (898)
T ss_pred C-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH----HHHHHHhcCCce
Confidence 4 677899999999999999999999997 356888888752 123444333 344477788899
Q ss_pred EEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCC-------------------
Q 006458 462 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRP------------------- 511 (644)
Q Consensus 462 VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~------------------- 511 (644)
||||||||+ ++..+++.|++.+++ ..+|+|||||+|..
T Consensus 663 VVLfdeIEk------------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~ 730 (898)
T KOG1051|consen 663 VVLFEEIEK------------AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDE 730 (898)
T ss_pred EEEEechhh------------cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchh
Confidence 999999998 567788888777653 46799999998841
Q ss_pred ---------------------CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHH
Q 006458 512 ---------------------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 512 ---------------------~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
..+.+.|++|+|.++.|.+.+.++...|+...+...
T Consensus 731 ~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~ 787 (898)
T KOG1051|consen 731 KRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEI 787 (898)
T ss_pred hhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHH
Confidence 234578888999999999999999988888887664
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=5.1e-14 Score=166.80 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=141.2
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCCC
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDVA 437 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l~ 437 (644)
..++.+||.+....++..++... ..+|++|+||||||||++++.||..+ +.+++.++++.+.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~--------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRR--------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHccc--------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 45899999999888887765322 34579999999999999999999986 3678888877653
Q ss_pred ---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006458 438 ---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-- 512 (644)
Q Consensus 438 ---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~-- 512 (644)
.+.++....+..+++.+... .++||||||+|.|++.+...+. ......|...+ ..+.+.+|++|+..+
T Consensus 248 ag~~~~ge~e~rl~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~g~-~~~a~lLkp~l-----~rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 248 AGTKYRGEFEERLKRIFDEIQEN-NNIILVIDEVHTLIGAGAAEGA-IDAANILKPAL-----ARGELQCIGATTLDEYR 320 (821)
T ss_pred ccCCCccHHHHHHHHHHHHHHhc-CCeEEEEecHHHHhcCCCCCCc-ccHHHHhHHHH-----hCCCcEEEEeCCHHHHH
Confidence 35567788999999998754 4789999999999876543221 12233333333 456789999988753
Q ss_pred ---CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006458 513 ---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 589 (644)
Q Consensus 513 ---~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G 589 (644)
..|+++.+|| ..|.++.|+.++...|++.....+... +.+. ++++.+..++..+.+
T Consensus 321 ~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~-------------------~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 321 KHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKH-------------------HNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHH-------------------cCCC-CCHHHHHHHHHHhhc
Confidence 4789999999 678999999999999999877665422 1111 788888888888877
Q ss_pred CcH
Q 006458 590 FSG 592 (644)
Q Consensus 590 ~Sg 592 (644)
|-+
T Consensus 380 yi~ 382 (821)
T CHL00095 380 YIA 382 (821)
T ss_pred cCc
Confidence 654
No 142
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-13 Score=148.09 Aligned_cols=221 Identities=18% Similarity=0.271 Sum_probs=153.8
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC-----eEEEeCCCCCC---------
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD-----YALMTGGDVAP--------- 438 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~-----~~~i~~~~l~~--------- 438 (644)
+.+.++....+..+ ......++.| .|+++|||||||||.+++.+++++..+ ++++||-.+.+
T Consensus 19 l~~Re~ei~~l~~~---l~~~~~~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASF---LAPALRGERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHH---HHHHhcCCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 55555555555443 3333444444 579999999999999999999998433 89999876532
Q ss_pred --------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006458 439 --------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 510 (644)
Q Consensus 439 --------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~ 510 (644)
.|......+..+++.........||+|||+|.|..+.. .++..|+........++.+|+.+|.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccccceeEEEEEEecc
Confidence 23333334455555555556678999999999965432 5677777666655677899999987
Q ss_pred C---CCCCHHHhccc-ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH
Q 006458 511 P---GDLDSAVADRI-DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 586 (644)
Q Consensus 511 ~---~~ld~al~~Rf-d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~ 586 (644)
. ..+++.+.++| ...|.|++++.+|...||....+... .-..+++..++.+|..
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~----------------------~~~~~~~~vl~lia~~ 223 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGF----------------------SAGVIDDDVLKLIAAL 223 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhc----------------------cCCCcCccHHHHHHHH
Confidence 5 47899999876 45689999999999999999987532 1234788888888866
Q ss_pred cCCC--cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 587 TEGF--SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 587 t~G~--SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
..-. +.|---.+|+.+-..+.......++.+++..+.+..-.
T Consensus 224 ~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 224 VAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 5322 33333445555555555567799999999999544433
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.58 E-value=1.4e-13 Score=142.21 Aligned_cols=131 Identities=21% Similarity=0.266 Sum_probs=92.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----Cch----hHHHHHHH-------------------HHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----LGP----QAVTKIHQ-------------------LFDWA 454 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----~g~----~~~~~l~~-------------------~f~~a 454 (644)
++||+||||||||++|+.||..+|.+++.++|..-.. +|. .....+.. .+..+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 4999999999999999999999999999998765221 111 00000010 11122
Q ss_pred HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC----C---------CCCCEEEEEEeCCCC-----CCCH
Q 006458 455 KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----D---------QSKDIVLALATNRPG-----DLDS 516 (644)
Q Consensus 455 ~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~----~---------~~~~viiI~ttN~~~-----~ld~ 516 (644)
.. .+.+|||||++.+ ++.....|..+|..-. . .+.++.||+|+|... .+++
T Consensus 103 ~~--~g~~lllDEi~r~---------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 103 VR--EGFTLVYDEFTRS---------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred HH--cCCEEEEcchhhC---------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 22 3579999999986 3455555666554310 0 234788999999752 5689
Q ss_pred HHhcccceeEecCCCCHHHHHHHHHHHH
Q 006458 517 AVADRIDEVLEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 517 al~~Rfd~~i~~~~p~~~er~~Il~~~l 544 (644)
++++|| ..+.++.|+.++...|+..++
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 999999 899999999999999998865
No 144
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=1.3e-13 Score=147.61 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=113.8
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-------CeEEE-eC----
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-------DYALM-TG---- 433 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~-------~~~~i-~~---- 433 (644)
.+..|++|+|+..+...+...+.. +..+..+||+||+|+|||++|+.+|+.+.+ +.... .|
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 455799999999999998765532 233345999999999999999999999754 11000 00
Q ss_pred ----------CCCC---------------CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHH
Q 006458 434 ----------GDVA---------------PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSAL 488 (644)
Q Consensus 434 ----------~~l~---------------~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l 488 (644)
.++. .++.+....+...|........+.||||||+|.| .....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------~~~aa 158 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------NRNAA 158 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------CHHHH
Confidence 0000 0111222233333333222345679999999997 24467
Q ss_pred HHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHH
Q 006458 489 NALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLY 543 (644)
Q Consensus 489 ~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~ 543 (644)
|.||+.+++.+.+++||+.|+.++.+.+.+++|| ..+.|++|+.++...+|...
T Consensus 159 naLLk~LEEpp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 159 NAILKTLEEPPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred HHHHHHHhcCCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence 8889989888889999999999999999999999 89999999999999988863
No 145
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.55 E-value=3.5e-12 Score=146.19 Aligned_cols=218 Identities=20% Similarity=0.237 Sum_probs=138.1
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCC
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 435 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~ 435 (644)
.+.+|++++|++.....+...+ .. ..+.+++|+||||||||++|+.+.+.. +.+|+.++|..
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~i---a~-----~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKV---AS-----PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHH---hc-----CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 3557999999998888764332 11 112469999999999999999998765 35689999876
Q ss_pred CCCCchhH------------HHHHHHHHHHH---------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH
Q 006458 436 VAPLGPQA------------VTKIHQLFDWA---------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 494 (644)
Q Consensus 436 l~~~g~~~------------~~~l~~~f~~a---------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~ 494 (644)
+....... .......+... .....+++|||||++.| +...+..|..++..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L---------d~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL---------DPLLQNKLLKVLED 291 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC---------CHHHHHHHHHHHhh
Confidence 53100000 00000001000 00112579999999987 33444455545432
Q ss_pred hC-------------------------CCCCCEEEEE-EeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHh
Q 006458 495 TG-------------------------DQSKDIVLAL-ATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI 548 (644)
Q Consensus 495 ~~-------------------------~~~~~viiI~-ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~ 548 (644)
-. ....++++|+ |++.+..++++|++|| ..++|++++.+++..|++.++.+..
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~-~~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRC-AEVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhce-eEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 10 0123466666 4566888999999999 5778999999999999999886532
Q ss_pred hhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-h-------CCCCCccCHHHHH
Q 006458 549 AQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV-Y-------GSENCVLDPSLFR 620 (644)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~-~-------~~~~~~lt~~~~~ 620 (644)
. .++++.++.|+..+. .+|..-+++..+...+ + ......||.+++.
T Consensus 371 v------------------------~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~ 424 (615)
T TIGR02903 371 V------------------------HLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVY 424 (615)
T ss_pred C------------------------CCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHH
Confidence 1 278889999988864 4554444442222211 1 1122478999999
Q ss_pred HHHHHHH
Q 006458 621 EVVDYKV 627 (644)
Q Consensus 621 ~al~~~~ 627 (644)
+++....
T Consensus 425 ~~l~~~r 431 (615)
T TIGR02903 425 EVIQISR 431 (615)
T ss_pred HHhCCCc
Confidence 9988664
No 146
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.7e-13 Score=145.25 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=113.2
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC--------CeEEEeCCCCCCCc
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL--------DYALMTGGDVAPLG 440 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~--------~~~~i~~~~l~~~g 440 (644)
+|++|+|++.+++.+...+. .+..+..+||+||+|+|||++|+.+|+.+.+ +++.+...+-...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~ 74 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIG 74 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCC
Confidence 48999999999988866542 2333346899999999999999999998632 23333221111122
Q ss_pred hhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHH
Q 006458 441 PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSA 517 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~a 517 (644)
...++.+...+.. .....|++||++|.+ .....|.||..+++.+.+++||++|+.++.+.+.
T Consensus 75 ---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m------------~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 75 ---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM------------TEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred ---HHHHHHHHHHHhcCcccCCceEEEEechhhc------------CHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 3345555544332 234579999999986 2446889999999999999999999999999999
Q ss_pred HhcccceeEecCCCCHHHHHHHHHHHH
Q 006458 518 VADRIDEVLEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 518 l~~Rfd~~i~~~~p~~~er~~Il~~~l 544 (644)
+++|| .+++|++|+.++....+...+
T Consensus 140 I~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 140 IKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 99999 899999999999877776543
No 147
>PRK09087 hypothetical protein; Validated
Probab=99.55 E-value=1.9e-13 Score=138.00 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=128.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhH
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~ 443 (644)
..+..+|+++|..+.....+..+.... +.+.+.++||||+|+|||+|+++++...+..|+ +...+. .+
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~~l~~~~------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~---~~- 81 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVSLVDHWP------NWPSPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIG---SD- 81 (226)
T ss_pred CCCCCChhceeecCchHHHHHHHHhcc------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcc---hH-
Confidence 355668999995332222333222111 112234999999999999999999988655433 322211 11
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---CCCHHHhc
Q 006458 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---DLDSAVAD 520 (644)
Q Consensus 444 ~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~---~ld~al~~ 520 (644)
++.... ..+|+|||++.+.. ........+|.+. ..+..+||.++..|. ...+.+++
T Consensus 82 ------~~~~~~----~~~l~iDDi~~~~~------~~~~lf~l~n~~~-----~~g~~ilits~~~p~~~~~~~~dL~S 140 (226)
T PRK09087 82 ------AANAAA----EGPVLIEDIDAGGF------DETGLFHLINSVR-----QAGTSLLMTSRLWPSSWNVKLPDLKS 140 (226)
T ss_pred ------HHHhhh----cCeEEEECCCCCCC------CHHHHHHHHHHHH-----hCCCeEEEECCCChHHhccccccHHH
Confidence 111111 24789999997521 1122333333333 223334443433333 23688999
Q ss_pred ccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHH
Q 006458 521 RID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKL 598 (644)
Q Consensus 521 Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L 598 (644)
||. .++.+..|+.+++..|++.++..... .++++.++.|+.++.| +.+.+..+
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~------------------------~l~~ev~~~La~~~~r-~~~~l~~~ 195 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQL------------------------YVDPHVVYYLVSRMER-SLFAAQTI 195 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHhhh-hHHHHHHH
Confidence 984 89999999999999999999976422 2899999999999865 66666666
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 599 MASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 599 ~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
+..+...+... ...+|..++++++...
T Consensus 196 l~~L~~~~~~~-~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 196 VDRLDRLALER-KSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHhh
Confidence 66665544432 3679999999999764
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.53 E-value=2.7e-13 Score=145.51 Aligned_cols=227 Identities=18% Similarity=0.263 Sum_probs=148.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~~l~~ 438 (644)
-.+.++|+++|..+............. ..++.+++.++||||+|+|||+|++++++... ..+++++...+..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va---~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~ 156 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVA---ENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN 156 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHH---hccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH
Confidence 367789999997666554443332222 22333556699999999999999999998862 3466665544321
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CC---C
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PG---D 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~~---~ 513 (644)
+.......-..-|.. .. .-++|+|||++.+.++... .+..-.+||.+. ..++ .||+|+.+ |. .
T Consensus 157 ~~v~a~~~~~~~~Fk~--~y-~~dlllIDDiq~l~gk~~~---qeefFh~FN~l~-----~~~k-qIvltsdr~P~~l~~ 224 (408)
T COG0593 157 DFVKALRDNEMEKFKE--KY-SLDLLLIDDIQFLAGKERT---QEEFFHTFNALL-----ENGK-QIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHHhhhHHHHHH--hh-ccCeeeechHhHhcCChhH---HHHHHHHHHHHH-----hcCC-EEEEEcCCCchhhcc
Confidence 100000000111211 12 3579999999998654322 223444555554 2233 55566643 44 4
Q ss_pred CCHHHhccc--ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~Rf--d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+.+.|.+|| ..++.+.+|+.+.|..||+..+...... ++++.+..|+..... +
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~------------------------i~~ev~~~la~~~~~-n 279 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE------------------------IPDEVLEFLAKRLDR-N 279 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC------------------------CCHHHHHHHHHHhhc-c
Confidence 568999998 5788999999999999999977654322 899999999999755 7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~ 631 (644)
.|++..++..+.+.+.... ..||.+.+.+++........
T Consensus 280 vReLegaL~~l~~~a~~~~-~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 280 VRELEGALNRLDAFALFTK-RAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHHHHHHHHHHHHHhcC-ccCcHHHHHHHHHHhhcccc
Confidence 7888887766655554333 48999999999988775433
No 149
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=2.7e-13 Score=145.84 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=115.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC-----------------
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD----------------- 427 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~----------------- 427 (644)
..+..+++|||++.+++.|...+.. +..+..+||+||+|+||+++|..+|+.+-+.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~ 85 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI 85 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC
Confidence 3455799999999999998765433 2333459999999999999999999987321
Q ss_pred -----------------eEEEeCCCCCCCc-----hhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCH
Q 006458 428 -----------------YALMTGGDVAPLG-----PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSE 482 (644)
Q Consensus 428 -----------------~~~i~~~~l~~~g-----~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~ 482 (644)
++.+.... ...+ .-.+..++.+...+.. ...+.||+|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m----------- 153 (365)
T PRK07471 86 DPDHPVARRIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM----------- 153 (365)
T ss_pred CCCChHHHHHHccCCCCeEEEeccc-ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----------
Confidence 11111000 0000 0013344444444332 244689999999986
Q ss_pred HHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHH
Q 006458 483 AQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 483 ~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l 544 (644)
.....|.||+.++..+.+++||++|+.++.+.+.+++|| ..+.|++|+.++...+|....
T Consensus 154 -~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 154 -NANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -CHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 345788899999888889999999999999999999999 999999999999998887753
No 150
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.51 E-value=5.8e-13 Score=139.50 Aligned_cols=103 Identities=25% Similarity=0.246 Sum_probs=68.7
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------------CCCCCHHHhcccceeEe
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------PGDLDSAVADRIDEVLE 527 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~------------~~~ld~al~~Rfd~~i~ 527 (644)
|+||||||++.| +-.....||..+ +.. -..+||++||+ |..++..|++|+ .+|.
T Consensus 279 pGVLFIDEvHmL---------DiEcFsfLnral---Es~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~ 344 (398)
T PF06068_consen 279 PGVLFIDEVHML---------DIECFSFLNRAL---ESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIR 344 (398)
T ss_dssp E-EEEEESGGGS---------BHHHHHHHHHHH---TST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEE
T ss_pred cceEEecchhhc---------cHHHHHHHHHHh---cCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEE
Confidence 579999999987 334455555554 333 34577788885 667899999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHH
Q 006458 528 FPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 528 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
..+++.++..+|++..+....+. ++++.++.|+......|-|---+|+.
T Consensus 345 t~py~~~ei~~Il~iR~~~E~v~------------------------i~~~al~~L~~ig~~~SLRYAiqLi~ 393 (398)
T PF06068_consen 345 TKPYSEEEIKQILKIRAKEEDVE------------------------ISEDALDLLTKIGVETSLRYAIQLIT 393 (398)
T ss_dssp E----HHHHHHHHHHHHHHCT--------------------------B-HHHHHHHHHHHHHS-HHHHHHCHH
T ss_pred CCCCCHHHHHHHHHhhhhhhcCc------------------------CCHHHHHHHHHHhhhccHHHHHHhhh
Confidence 99999999999999999875433 78889999888766667666665553
No 151
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.50 E-value=4.9e-13 Score=131.10 Aligned_cols=146 Identities=22% Similarity=0.315 Sum_probs=107.6
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCCC------------------------eEEEeCCCCCCCchhHHHHHHHHHH
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------------YALMTGGDVAPLGPQAVTKIHQLFD 452 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~------------------------~~~i~~~~l~~~g~~~~~~l~~~f~ 452 (644)
+..+..+|||||+|+|||++++.+++.+... +..+.... ...+ ...+..+.+
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-~~~~---~~~i~~i~~ 86 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-QSIK---VDQVRELVE 86 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-CcCC---HHHHHHHHH
Confidence 3344679999999999999999999987431 22222110 1122 234444454
Q ss_pred HHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecC
Q 006458 453 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 529 (644)
Q Consensus 453 ~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~ 529 (644)
.+.. ...+.||||||+|.|. ....+.|+..++..+.+++||++||.+..+.+++.+|+ .++.|+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~-~~~~~~ 153 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC-QVLPFP 153 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc-EEeeCC
Confidence 4443 3456799999999972 23567788888888888999999988899999999999 799999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006458 530 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 589 (644)
Q Consensus 530 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G 589 (644)
+|+.++...++... . ++++.+..|+..+.|
T Consensus 154 ~~~~~~~~~~l~~~----g--------------------------i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 154 PLSEEALLQWLIRQ----G--------------------------ISEEAAELLLALAGG 183 (188)
T ss_pred CCCHHHHHHHHHHc----C--------------------------CCHHHHHHHHHHcCC
Confidence 99999988777664 0 567889999988866
No 152
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.49 E-value=1.6e-12 Score=137.91 Aligned_cols=247 Identities=17% Similarity=0.157 Sum_probs=140.8
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-------CCCe--EEEeCC-CC
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-------GLDY--ALMTGG-DV 436 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-------~~~~--~~i~~~-~l 436 (644)
+..|.+|+|++.++..+...+.. ....|+||+||||||||+++++++..+ +.++ ..+.+. ++
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 44699999999998877432110 112579999999999999999999998 3321 111100 00
Q ss_pred -----------------CC--------CchhHHH-HH-HH--HHHH-HHhcCCCeEEEEeccchhhhccccCcCCHHHHH
Q 006458 437 -----------------AP--------LGPQAVT-KI-HQ--LFDW-AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRS 486 (644)
Q Consensus 437 -----------------~~--------~g~~~~~-~l-~~--~f~~-a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~ 486 (644)
.+ +|+-... .+ .. .|.. ......+++|||||++.+ +...+.
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------~~~~q~ 146 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------EDHIVD 146 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------CHHHHH
Confidence 00 1100000 00 00 0000 000112368999999997 334444
Q ss_pred HHHHHHHHhC----------CCCCCEEEEEEeCCCC-CCCHHHhcccceeEecCCCCH-HHHHHHHHHHHHHHh--hhh-
Q 006458 487 ALNALLFRTG----------DQSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYI--AQA- 551 (644)
Q Consensus 487 ~l~~lL~~~~----------~~~~~viiI~ttN~~~-~ld~al~~Rfd~~i~~~~p~~-~er~~Il~~~l~~~~--~~~- 551 (644)
.|...+..-. ..+.++++|+|+|..+ .+++++++||...+.+++|.. +++.+|+......-. ...
T Consensus 147 ~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 147 LLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred HHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 4444443211 1345789999999754 689999999999999998877 899999988643110 000
Q ss_pred -CCCC-CCcchhhhhhhhhhhhccCCCHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 552 -GSRK-PGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT---EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 552 -~~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t---~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
.... ......-+......+.--.+++..+.+++..+ .--|.|--..|+.++++.+.-.+...++.+++..+....
T Consensus 227 ~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 227 AKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred ccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 0000 00000111111122222236777777665553 212333333388888888877788999999998887444
Q ss_pred HHhHH
Q 006458 627 VAEHQ 631 (644)
Q Consensus 627 ~~~~~ 631 (644)
..|+
T Consensus 307 -l~hR 310 (334)
T PRK13407 307 -LSHR 310 (334)
T ss_pred -hhhh
Confidence 4454
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=7.6e-13 Score=139.77 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=113.6
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC------------------eEE
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------YAL 430 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~------------------~~~ 430 (644)
.|++|+|++.++..+...+.. +.-+..+||+||+|+||+++|.++|+.+-+. ++.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 389999999999999776533 2333579999999999999999999986321 122
Q ss_pred EeCC-----C-CC-----CCc-------hhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHH
Q 006458 431 MTGG-----D-VA-----PLG-------PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALN 489 (644)
Q Consensus 431 i~~~-----~-l~-----~~g-------~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~ 489 (644)
+... . +. ..| .-....++.+...+.. ...+.|++||++|.| .....|
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------~~~aaN 142 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------NEAAAN 142 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc------------CHHHHH
Confidence 2110 0 00 000 0012345555555543 235689999999997 345788
Q ss_pred HHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHH
Q 006458 490 ALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 490 ~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l 544 (644)
.||+.+++.+ +++||++|+.++.+.|.+++|| .++.|++|+.++...+|....
T Consensus 143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 9999998877 7889999999999999999999 999999999999988888754
No 154
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.47 E-value=5.3e-12 Score=134.23 Aligned_cols=246 Identities=14% Similarity=0.124 Sum_probs=148.6
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-------CCeEEEe------
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMT------ 432 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-------~~~~~i~------ 432 (644)
+.+.|.+|||+++++..|...+. + ...+++||+||+|||||++++.++..+. .||....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~-----p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~ 83 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---D-----PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELM 83 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---C-----CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhh
Confidence 34469999999999888843221 1 1336799999999999999999988763 2222000
Q ss_pred ---------CC----------CCC--CCchhHHHHH------HHHHHHHH--------hcCCCeEEEEeccchhhhcccc
Q 006458 433 ---------GG----------DVA--PLGPQAVTKI------HQLFDWAK--------KSKRGLLLFIDEADAFLCERNK 477 (644)
Q Consensus 433 ---------~~----------~l~--~~g~~~~~~l------~~~f~~a~--------~~~~~~VL~IDEid~l~~~r~~ 477 (644)
++ .+. +.+ -....+ ...|.... ....+++|||||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~-~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL------ 156 (350)
T CHL00081 84 SDEVREAIQNGETIETEKIKIPMVDLPLG-ATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL------ 156 (350)
T ss_pred chhhhhhhcccccccceeccccceecCCC-CchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC------
Confidence 00 000 000 011111 11111110 0112479999999997
Q ss_pred CcCCHHHHHHHHHHHHH----h---C---CCCCCEEEEEEeCCCC-CCCHHHhcccceeEecCCCC-HHHHHHHHHHHHH
Q 006458 478 TYMSEAQRSALNALLFR----T---G---DQSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLPG-QEERFKLLKLYLD 545 (644)
Q Consensus 478 ~~~~~~~~~~l~~lL~~----~---~---~~~~~viiI~ttN~~~-~ld~al~~Rfd~~i~~~~p~-~~er~~Il~~~l~ 545 (644)
++..+..|...+.. + + ..+.++++|+|.|..+ .+.+.+++||...+.+..|+ .+.+.+|++....
T Consensus 157 ---~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 157 ---DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred ---CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhc
Confidence 33445555444433 1 1 1345788888888655 69999999999999999998 5999999988642
Q ss_pred HHhhhhC------CCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhCCCCCccCH
Q 006458 546 KYIAQAG------SRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---TEGFSGREIAKLMASVQAAVYGSENCVLDP 616 (644)
Q Consensus 546 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~---t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~ 616 (644)
....... ............ ....+.--.+++..+.+|+.. +.--|+|--..|+.++++.++-.+...++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~I~~-ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~p 312 (350)
T CHL00081 234 FDKNPQEFREKYEESQEELRSKIVA-AQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTP 312 (350)
T ss_pred cccChhhhhhhhccccccCHHHHHH-HHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCH
Confidence 1000000 000001111111 112222223677776666555 433478888888888888888788899999
Q ss_pred HHHHHHHHHHHHhH
Q 006458 617 SLFREVVDYKVAEH 630 (644)
Q Consensus 617 ~~~~~al~~~~~~~ 630 (644)
+|+..+........
T Consensus 313 dDv~~~a~~vL~HR 326 (350)
T CHL00081 313 KDIFKVITLCLRHR 326 (350)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988876643
No 155
>PRK04132 replication factor C small subunit; Provisional
Probab=99.47 E-value=1.1e-12 Score=152.53 Aligned_cols=175 Identities=21% Similarity=0.195 Sum_probs=132.1
Q ss_pred CCccEEEec--CCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcC-----CCeEEEEe
Q 006458 399 PFRNMLFYG--PPGTGKTMAARELARKS-----GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSK-----RGLLLFID 466 (644)
Q Consensus 399 p~~~iLL~G--ppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~-----~~~VL~ID 466 (644)
|.-+-+..| |++.||||+|++||+.+ +.+++.+|+++..+ ...++.++..+.... ++.|+|||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg-----id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG-----INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc-----HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 444567789 99999999999999997 56799999988532 224444444333222 24799999
Q ss_pred ccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHH
Q 006458 467 EADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 546 (644)
Q Consensus 467 Eid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~ 546 (644)
|+|.|. ....+.|+..++..+.++.||++||.+..+.++++||| ..+.|++|+.++....|...+.+
T Consensus 638 EaD~Lt------------~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 638 EADALT------------QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred CcccCC------------HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 999972 34678888888888899999999999999999999999 99999999999999999888765
Q ss_pred HhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 006458 547 YIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFRE 621 (644)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~ 621 (644)
... .++++.+..|+..++| |++..+..++.++... ..||.+++..
T Consensus 705 Egi------------------------~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~~--~~It~~~V~~ 749 (846)
T PRK04132 705 EGL------------------------ELTEEGLQAILYIAEG----DMRRAINILQAAAALD--DKITDENVFL 749 (846)
T ss_pred cCC------------------------CCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 321 1788999999999877 5555555555544322 3456555443
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.7e-12 Score=137.87 Aligned_cols=131 Identities=27% Similarity=0.382 Sum_probs=99.6
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCC------------------------CeEEEeCCCCC-CCchhHHHHHHHHH
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGL------------------------DYALMTGGDVA-PLGPQAVTKIHQLF 451 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~------------------------~~~~i~~~~l~-~~g~~~~~~l~~~f 451 (644)
+..+..+||+||+|+|||++|+.+|+.+.+ +++.+....-. ..+ +..++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~---id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIK---VDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCC---HHHHHHHH
Confidence 344456999999999999999999998743 22333221111 122 34455555
Q ss_pred HHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEec
Q 006458 452 DWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEF 528 (644)
Q Consensus 452 ~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~ 528 (644)
..+.. ..++.|++||++|.| .....|.||+.+++.+.+++||++|+.++.+.|.++||| ..+.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m------------~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~ 162 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM------------NRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC-QQQAC 162 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC------------CHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc-eeeeC
Confidence 44443 334679999999997 346799999999999999999999999999999999999 78999
Q ss_pred CCCCHHHHHHHHHHH
Q 006458 529 PLPGQEERFKLLKLY 543 (644)
Q Consensus 529 ~~p~~~er~~Il~~~ 543 (644)
++|+.++....|...
T Consensus 163 ~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 163 PLPSNEESLQWLQQA 177 (328)
T ss_pred CCcCHHHHHHHHHHh
Confidence 999999988877654
No 157
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.44 E-value=1.8e-12 Score=141.23 Aligned_cols=258 Identities=22% Similarity=0.282 Sum_probs=182.1
Q ss_pred hhcchhhHHHHHhhhhhhhhhhccccCchhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCC
Q 006458 289 ILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGN 368 (644)
Q Consensus 289 ~~~d~~~~~~~v~~~~~~~~gv~t~~~~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~ 368 (644)
+++....+.++|..+...++.+.+.+....-....+.+.+....+.+|..+ .. .....
T Consensus 81 ~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~-~~---------------------~~~~~ 138 (464)
T COG2204 81 VMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRR-SL---------------------KRAKS 138 (464)
T ss_pred EEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhh-hh---------------------hcccc
Confidence 356777888888888888999999999999999999999887666666543 00 01122
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--CchhH
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--LGPQA 443 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--~g~~~ 443 (644)
.+.++||....+..+...+...+.+.. +|||+|.+||||..+|++|-... +.||+.+||+.+.. +..+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESEL 212 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDA------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESEL 212 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHh
Confidence 478899999999999888877766554 39999999999999999998887 46999999998865 12222
Q ss_pred HHHHHHHHHHHHhcC-------CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH-----hCC---CCCCEEEEEEe
Q 006458 444 VTKIHQLFDWAKKSK-------RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-----TGD---QSKDIVLALAT 508 (644)
Q Consensus 444 ~~~l~~~f~~a~~~~-------~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~-----~~~---~~~~viiI~tt 508 (644)
++.-...|+-|...+ .++.||||||..| +-..+.-|..+|+. ++. ..-++.||++|
T Consensus 213 FGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m---------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT 283 (464)
T COG2204 213 FGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM---------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT 283 (464)
T ss_pred hcccccCcCCcccccCcceeEcCCceEEeeccccC---------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeec
Confidence 222222333333222 2578999999987 44556566666654 221 34579999999
Q ss_pred CCC-------CCCCHHHhcccceeEecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 509 NRP-------GDLDSAVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 509 N~~-------~~ld~al~~Rfd~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
|.. ..|-..|.-|+ .++.+..|...+|.+ |+++++.+.... .+.....+++
T Consensus 284 ~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~-----------------~~~~~~~~s~ 345 (464)
T COG2204 284 NRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAE-----------------LGRPPKGFSP 345 (464)
T ss_pred CcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHH-----------------cCCCCCCCCH
Confidence 973 45677777799 888888888877665 444444443322 1233456899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHH
Q 006458 578 DILMEAAAKTEGFSGREIAKLMAS 601 (644)
Q Consensus 578 ~~l~~LA~~t~G~SgrdI~~L~~~ 601 (644)
+.+..|..+..--+.|+|.+++..
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver 369 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVER 369 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999988765567888887753
No 158
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.44 E-value=2.5e-11 Score=125.47 Aligned_cols=196 Identities=17% Similarity=0.151 Sum_probs=123.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC-CeEEE--eCCCCCC----------C-----chhHH---HHHHHHHHHHHhcCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL-DYALM--TGGDVAP----------L-----GPQAV---TKIHQLFDWAKKSKR 459 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~-~~~~i--~~~~l~~----------~-----g~~~~---~~l~~~f~~a~~~~~ 459 (644)
..++|+||+|+|||++++.+++.+.. .+... ....... + +.... ..+...+......+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998752 22211 1111100 1 11111 122222222223445
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC--CCC----CCHHHhcccceeEecCCCCH
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR--PGD----LDSAVADRIDEVLEFPLPGQ 533 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~--~~~----ld~al~~Rfd~~i~~~~p~~ 533 (644)
+.||+|||++.+. ......+..+..........+.||++... ... -...+.+|+...+++++++.
T Consensus 124 ~~vliiDe~~~l~---------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 124 RALLVVDEAQNLT---------PELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred CeEEEEECcccCC---------HHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 6899999999872 22333444333322222334444555432 111 12356778888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCc
Q 006458 534 EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCV 613 (644)
Q Consensus 534 ~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~ 613 (644)
++...++...+....... ...++++.++.|.+.|.|. ++.|..+|..+...++..+...
T Consensus 195 ~e~~~~l~~~l~~~g~~~--------------------~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~ 253 (269)
T TIGR03015 195 EETREYIEHRLERAGNRD--------------------APVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKRE 253 (269)
T ss_pred HHHHHHHHHHHHHcCCCC--------------------CCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCC
Confidence 999999998886532110 0137899999999999996 5679999977766666666789
Q ss_pred cCHHHHHHHHHHH
Q 006458 614 LDPSLFREVVDYK 626 (644)
Q Consensus 614 lt~~~~~~al~~~ 626 (644)
||.+++..++...
T Consensus 254 i~~~~v~~~~~~~ 266 (269)
T TIGR03015 254 IGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998864
No 159
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.5e-12 Score=128.39 Aligned_cols=220 Identities=17% Similarity=0.294 Sum_probs=136.4
Q ss_pred cccChHHHHHHHH-----HHHHhhchhccC--CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC---Cchh
Q 006458 373 VILHPSLQKRIRQ-----LSGATANTKAHN--APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LGPQ 442 (644)
Q Consensus 373 vig~~~~~~~l~~-----l~~~~~~~~~~~--~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~---~g~~ 442 (644)
|||++.+++.+.- ..+-........ ..-.||||.||+|||||+||+.||+.++.||...+...+.. +|.+
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 6799999887721 221111111111 22358999999999999999999999999999998877743 5555
Q ss_pred HHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcC-----CHHHHHHHHHHHHHhC-C----------------
Q 006458 443 AVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYM-----SEAQRSALNALLFRTG-D---------------- 497 (644)
Q Consensus 443 ~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~-----~~~~~~~l~~lL~~~~-~---------------- 497 (644)
.+..+..++..+. .....+||+|||||++.++..+... .+..++.|..++..+- .
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iq 222 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQ 222 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEE
Confidence 5555666655432 1223479999999999887654432 2344444444443321 0
Q ss_pred -CCCCEEEEEEeCC---------------------------------------CC-----CCCHHHhcccceeEecCCCC
Q 006458 498 -QSKDIVLALATNR---------------------------------------PG-----DLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 498 -~~~~viiI~ttN~---------------------------------------~~-----~ld~al~~Rfd~~i~~~~p~ 532 (644)
+..|++||+..-. |+ .+-|.|+.|++.+..+..++
T Consensus 223 vDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Ld 302 (408)
T COG1219 223 VDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELD 302 (408)
T ss_pred EcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcC
Confidence 3345666653210 00 24589999999999999999
Q ss_pred HHHHHHHHHH----HHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCcHHHHHHHHHH-HHHH
Q 006458 533 QEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLMAS-VQAA 605 (644)
Q Consensus 533 ~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t--~G~SgrdI~~L~~~-~~aa 605 (644)
.+....||.. ..++|..- |.-..-.+ .++++.+..||.+. .+-..|-|+.++.. +...
T Consensus 303 e~aLv~ILtePkNAlvKQYq~L------------f~~d~V~L---~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~ 367 (408)
T COG1219 303 EDALVQILTEPKNALVKQYQKL------------FEMDGVEL---EFTEEALKAIAKKAIERKTGARGLRSIIEELLLDV 367 (408)
T ss_pred HHHHHHHHhcccHHHHHHHHHH------------hcccCceE---EEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 9999988753 22333211 11111111 37889999998874 33346778888743 3344
Q ss_pred Hh
Q 006458 606 VY 607 (644)
Q Consensus 606 ~~ 607 (644)
.|
T Consensus 368 Mf 369 (408)
T COG1219 368 MF 369 (408)
T ss_pred Hh
Confidence 44
No 160
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.44 E-value=1.2e-13 Score=133.27 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=73.0
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCC----CeEEEeCCCCCCCchhHHHHHHHHHHHH---HhcCCCeEEEEeccchh
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGL----DYALMTGGDVAPLGPQAVTKIHQLFDWA---KKSKRGLLLFIDEADAF 471 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~----~~~~i~~~~l~~~g~~~~~~l~~~f~~a---~~~~~~~VL~IDEid~l 471 (644)
|..++||+||+|||||.+|++||+.+.. +++.++++.+.. +.+....+..++..+ .....+.||||||||+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 6678999999999999999999999996 999999999876 111111111111111 11112359999999998
Q ss_pred hhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCC
Q 006458 472 LCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRP 511 (644)
Q Consensus 472 ~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~ 511 (644)
.+. .+...+..-..+++.||+.++. +.++++||+|+|..
T Consensus 81 ~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp SHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 654 2222222334667777776531 35689999999964
No 161
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.42 E-value=1.1e-11 Score=124.19 Aligned_cols=190 Identities=24% Similarity=0.331 Sum_probs=136.6
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-CC-----------------
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-GL----------------- 426 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-~~----------------- 426 (644)
+.+..|+.++++.+....+..+.. ...++|+|||||+|+||-|.+.+|-+++ |.
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~--------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~ 78 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSS--------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSK 78 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcc--------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCC
Confidence 445568888888887777755432 1234689999999999999999998886 31
Q ss_pred -----------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh--------cCCCeEEEEeccchhhhccccCcCCHHHHHH
Q 006458 427 -----------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK--------SKRGLLLFIDEADAFLCERNKTYMSEAQRSA 487 (644)
Q Consensus 427 -----------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~--------~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~ 487 (644)
..+.++.++.+.+. ...+.+++..... .++..||+|.|+|.|. +++
T Consensus 79 kklEistvsS~yHlEitPSDaG~~D---RvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------~dA 143 (351)
T KOG2035|consen 79 KKLEISTVSSNYHLEITPSDAGNYD---RVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------RDA 143 (351)
T ss_pred ceEEEEEecccceEEeChhhcCccc---HHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh------------HHH
Confidence 12233444443332 2233444433322 2346799999999973 344
Q ss_pred HHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhh
Q 006458 488 LNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQ 567 (644)
Q Consensus 488 l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 567 (644)
...|-..++.+.+++.+|+.+|..+.+-+++.+|| ..|.+|.|+.++...++...+.+....
T Consensus 144 Q~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~----------------- 205 (351)
T KOG2035|consen 144 QHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQ----------------- 205 (351)
T ss_pred HHHHHHHHHHHhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhccc-----------------
Confidence 55555666778899999999999999999999999 999999999999999999999875433
Q ss_pred hhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 006458 568 QKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV 606 (644)
Q Consensus 568 ~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~ 606 (644)
++++.+..|++.++| +++..+-...++.
T Consensus 206 -------lp~~~l~rIa~kS~~----nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 206 -------LPKELLKRIAEKSNR----NLRRALLMLEAVR 233 (351)
T ss_pred -------CcHHHHHHHHHHhcc----cHHHHHHHHHHHH
Confidence 678899999999755 5655544334333
No 162
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.42 E-value=1.3e-11 Score=131.34 Aligned_cols=243 Identities=16% Similarity=0.164 Sum_probs=144.3
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-------CCCeE------------
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-------GLDYA------------ 429 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-------~~~~~------------ 429 (644)
.|..|||+++++..+.-.+ . . ....++||.|+||||||+++++|+..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~--~----~--~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV--I----D--PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEE 73 (337)
T ss_pred CccccccHHHHHHHHHHHh--c----C--CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChH
Confidence 3889999999988873321 1 1 113579999999999999999999887 32222
Q ss_pred -EE--eC-------------CCCCCCchhHHHHHHHHHHHHH--------------hcCCCeEEEEeccchhhhccccCc
Q 006458 430 -LM--TG-------------GDVAPLGPQAVTKIHQLFDWAK--------------KSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 430 -~i--~~-------------~~l~~~g~~~~~~l~~~f~~a~--------------~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
.. .. .++. .+ -+...+....++.. ....+++|||||++.|
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~lP-~~-~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-------- 143 (337)
T TIGR02030 74 VRIRVDSQEPLSIIKKPVPVVDLP-LG-ATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL-------- 143 (337)
T ss_pred HhhhhhcccccccccCCCCcCCCC-CC-CcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC--------
Confidence 00 00 0100 00 00001111111111 0112479999999997
Q ss_pred CCHHHHHHHHHHHHHh-------C---CCCCCEEEEEEeCCCC-CCCHHHhcccceeEecCCCCH-HHHHHHHHHHHHHH
Q 006458 480 MSEAQRSALNALLFRT-------G---DQSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKY 547 (644)
Q Consensus 480 ~~~~~~~~l~~lL~~~-------~---~~~~~viiI~ttN~~~-~ld~al~~Rfd~~i~~~~p~~-~er~~Il~~~l~~~ 547 (644)
+...+..|..++..- + ..+.++++|+|+|..+ .+.+++++||...+.++.|+. +++..|++......
T Consensus 144 -~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~ 222 (337)
T TIGR02030 144 -EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYD 222 (337)
T ss_pred -CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcc
Confidence 334444444444321 0 1245688888888654 799999999999999999976 88999998754210
Q ss_pred h--hh---hCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHH
Q 006458 548 I--AQ---AGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---TEGFSGREIAKLMASVQAAVYGSENCVLDPSLF 619 (644)
Q Consensus 548 ~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~---t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~ 619 (644)
. .. .-.........-+......+.--.++++.+.+++.. +..-|.|--..|+.++++.+.-.+...++.+|+
T Consensus 223 ~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv 302 (337)
T TIGR02030 223 ADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDI 302 (337)
T ss_pred cCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 0 00 000000000111111112222223777766665554 443367888888888888888778899999999
Q ss_pred HHHHHHHHHhH
Q 006458 620 REVVDYKVAEH 630 (644)
Q Consensus 620 ~~al~~~~~~~ 630 (644)
..++.......
T Consensus 303 ~~~a~~vL~HR 313 (337)
T TIGR02030 303 RRVAVLALRHR 313 (337)
T ss_pred HHHHHHHHHHh
Confidence 99988776533
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=9.3e-12 Score=141.58 Aligned_cols=210 Identities=14% Similarity=0.153 Sum_probs=131.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEE-EeCCC---C---
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYAL-MTGGD---V--- 436 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~-i~~~~---l--- 436 (644)
.+.+..+++|+|+++....|..++...... ..+...++|+||||||||++++.+|+.++..++. ++... .
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~---~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~ 153 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLE---NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKND 153 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccc---cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccc
Confidence 467778999999999999887766543222 2233459999999999999999999998866543 11110 0
Q ss_pred ----C------CCchhHHHHHHHHHHHHHh---------cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHH-HhC
Q 006458 437 ----A------PLGPQAVTKIHQLFDWAKK---------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF-RTG 496 (644)
Q Consensus 437 ----~------~~g~~~~~~l~~~f~~a~~---------~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~-~~~ 496 (644)
. .........+..++..+.. .....||||||++.++.. ....+..+|. ...
T Consensus 154 ~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 154 HKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------DTRALHEILRWKYV 224 (637)
T ss_pred cccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------hHHHHHHHHHHHhh
Confidence 0 0001223334444444432 234579999999987542 1113444444 222
Q ss_pred CCCCCEEEEEEeC-CCC--------C------CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcc
Q 006458 497 DQSKDIVLALATN-RPG--------D------LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLV 559 (644)
Q Consensus 497 ~~~~~viiI~ttN-~~~--------~------ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~ 559 (644)
. ...+.||++++ .+. . +.+++++ |+ .+|.|++++.....+.|...+.........
T Consensus 225 e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~------ 296 (637)
T TIGR00602 225 S-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE------ 296 (637)
T ss_pred c-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc------
Confidence 2 23344444333 111 1 3378887 66 689999999999999999988764221100
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC
Q 006458 560 HRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG 608 (644)
Q Consensus 560 ~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~ 608 (644)
.....+++.+..|+..+.| ||+..+..++.++..
T Consensus 297 -----------~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 297 -----------KIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSK 330 (637)
T ss_pred -----------ccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhc
Confidence 0001256889999886555 999999988887543
No 164
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.42 E-value=4.5e-12 Score=116.63 Aligned_cols=122 Identities=34% Similarity=0.439 Sum_probs=82.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHHHH---HHHHHHHHhcCCCeEEEEeccchhhh
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKI---HQLFDWAKKSKRGLLLFIDEADAFLC 473 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~~l---~~~f~~a~~~~~~~VL~IDEid~l~~ 473 (644)
..+++|+||||||||++++.+++.+ +.+++.+++.............. ............+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3579999999999999999999998 88899998876644211111010 1122222333457899999999861
Q ss_pred ccccCcCCHHHHHHHHHHHHHhCCC---CCCEEEEEEeCCCC--CCCHHHhcccceeEecCC
Q 006458 474 ERNKTYMSEAQRSALNALLFRTGDQ---SKDIVLALATNRPG--DLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 474 ~r~~~~~~~~~~~~l~~lL~~~~~~---~~~viiI~ttN~~~--~ld~al~~Rfd~~i~~~~ 530 (644)
......+..++...... ..++.+|+++|... .+++.+.+||+..+.+++
T Consensus 98 --------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 98 --------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 12223344444433221 46789999998877 788999999998887763
No 165
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.41 E-value=2.4e-12 Score=136.49 Aligned_cols=150 Identities=27% Similarity=0.401 Sum_probs=108.3
Q ss_pred ccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC------------------------CC
Q 006458 372 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG------------------------LD 427 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~------------------------~~ 427 (644)
++++.......+....... +..+..+||+||||||||++|.+||+.+. .+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhc------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 4555555555554433221 11112499999999999999999999986 46
Q ss_pred eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEE
Q 006458 428 YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 504 (644)
Q Consensus 428 ~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~vii 504 (644)
++.++.++..... -....++.+....... .+..|++|||+|.| .....|.++..++..+.+++|
T Consensus 76 ~lel~~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidead~m------------t~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 76 FLELNPSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL------------TEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred eEEecccccCCCc-chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH------------hHHHHHHHHHHhccCCCCeEE
Confidence 7788877766532 1223334443333322 45689999999997 346889999999999999999
Q ss_pred EEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHH
Q 006458 505 ALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLK 541 (644)
Q Consensus 505 I~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~ 541 (644)
|++||.++.+-+.+.+|| ..+.|++|+.........
T Consensus 143 il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 143 ILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred EEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 999999999999999999 999999876655544443
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.41 E-value=1.3e-11 Score=135.04 Aligned_cols=233 Identities=16% Similarity=0.120 Sum_probs=132.4
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeCCC--CCC-CchhHH
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGD--VAP-LGPQAV 444 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~~~--l~~-~g~~~~ 444 (644)
-..|+|.+++.+.+...+.+. .++||+||||||||++|++|+..++. +|..+.+.. ... +|....
T Consensus 19 ~~~i~gre~vI~lll~aalag----------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i 88 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSI 88 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHH
Confidence 356789998888885543221 46999999999999999999998753 444443321 111 111111
Q ss_pred HHH--HHHHHHHHh--cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC----------CCCCEEEEEEeCC
Q 006458 445 TKI--HQLFDWAKK--SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALATNR 510 (644)
Q Consensus 445 ~~l--~~~f~~a~~--~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----------~~~~viiI~ttN~ 510 (644)
... ..-|..... .....|||+|||..+ ++. ..+.||..+.+ ..+..+||++||.
T Consensus 89 ~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra---------sp~---~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 89 QALKDEGRYQRLTSGYLPEAEIVFLDEIWKA---------GPA---ILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred hhhhhcCchhhhcCCccccccEEeecccccC---------CHH---HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111 111111110 001248999999875 223 34444444421 1112344556675
Q ss_pred CC---CCCHHHhcccceeEecCCCC-HHHHHHHHHHHHHHHhhhhCCCCCCcch-hhhhhhhhhhhccCCCHHHHHHHHH
Q 006458 511 PG---DLDSAVADRIDEVLEFPLPG-QEERFKLLKLYLDKYIAQAGSRKPGLVH-RLFKSEQQKIEIKGLTDDILMEAAA 585 (644)
Q Consensus 511 ~~---~ld~al~~Rfd~~i~~~~p~-~~er~~Il~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~LA~ 585 (644)
.. .+.+++.+||-..+.+|+|+ .++...||......... .......+. .-+......+.--.+++..++.|..
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~--~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~ 234 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDN--PVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQ 234 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccC--CCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHH
Confidence 32 34469999998889999997 45657777664221000 000001111 0011111112212366666555544
Q ss_pred Hc------C---CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 586 KT------E---GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 586 ~t------~---G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.. . ..|+|--.+++..+++.++-.+...++++|+. ++....
T Consensus 235 L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL 284 (498)
T PRK13531 235 LRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCL 284 (498)
T ss_pred HHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHh
Confidence 42 1 27999999999999999998888999999999 555543
No 167
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=2.6e-12 Score=134.61 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=99.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----CchhH---------HHHHHHHHHHHHhcCCCeEEEEec
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----LGPQA---------VTKIHQLFDWAKKSKRGLLLFIDE 467 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----~g~~~---------~~~l~~~f~~a~~~~~~~VL~IDE 467 (644)
++|||.||||||||++++.||..++.+++.+++..... +|... .......+.+|.+ .+++||+||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~illlDE 142 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVALCFDE 142 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh--CCeEEEech
Confidence 46999999999999999999999999999998765422 22111 0111234455543 368999999
Q ss_pred cchhhhccccCcCCHHHHHHHHHHHHH-----hC------CCCCCEEEEEEeCCCC------------CCCHHHhcccce
Q 006458 468 ADAFLCERNKTYMSEAQRSALNALLFR-----TG------DQSKDIVLALATNRPG------------DLDSAVADRIDE 524 (644)
Q Consensus 468 id~l~~~r~~~~~~~~~~~~l~~lL~~-----~~------~~~~~viiI~ttN~~~------------~ld~al~~Rfd~ 524 (644)
+|.. .+.....|+.+|.. +. ..+.++.||+|+|..+ .++.++++||-.
T Consensus 143 in~a---------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 143 YDAG---------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhcc---------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9986 44566778888773 11 1345799999999754 468999999977
Q ss_pred eEecCCCCHHHHHHHHHHHH
Q 006458 525 VLEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 525 ~i~~~~p~~~er~~Il~~~l 544 (644)
++.+++|+.++-..|+....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhc
Confidence 78999999999999998764
No 168
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=4.4e-12 Score=138.07 Aligned_cols=211 Identities=25% Similarity=0.308 Sum_probs=144.9
Q ss_pred hhhhccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC
Q 006458 360 KELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 436 (644)
Q Consensus 360 ~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l 436 (644)
..+.....++|++|||.......+...+...+... .+|||+|.+||||..+|++|-+.+ +.||+.+||+.+
T Consensus 234 ~~~~~~a~y~f~~Iig~S~~m~~~~~~akr~A~td------stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 234 GLLRLKAKYTFDDIIGESPAMLRVLELAKRIAKTD------STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred hhhccccccchhhhccCCHHHHHHHHHHHhhcCCC------CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 33445677899999998777777655554433322 359999999999999999998876 589999999988
Q ss_pred CC--CchhHHHHHHHHHHHHHhcCC--------CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh-----C---CC
Q 006458 437 AP--LGPQAVTKIHQLFDWAKKSKR--------GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-----G---DQ 498 (644)
Q Consensus 437 ~~--~g~~~~~~l~~~f~~a~~~~~--------~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~-----~---~~ 498 (644)
.. +.++.++.-...|+-|.+..+ ++-||||||..| +-..+.-|..+|++- + ..
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem---------pl~LQaKLLRVLQEkei~rvG~t~~~ 378 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM---------PLPLQAKLLRVLQEKEIERVGGTKPI 378 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------CHHHHHHHHHHHhhceEEecCCCCce
Confidence 54 222333333445555655322 357999999987 456777788887762 2 24
Q ss_pred CCCEEEEEEeCCC-------CCCCHHHhcccceeEecCCCCHHHHH----HHHHHHHHHHhhhhCCCCCCcchhhhhhhh
Q 006458 499 SKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERF----KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQ 567 (644)
Q Consensus 499 ~~~viiI~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er~----~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 567 (644)
+.+|.||++||.. ..|-..|.=|+ .++.+..|...+|. .+..+++.++..+.
T Consensus 379 ~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~---------------- 441 (560)
T COG3829 379 PVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRY---------------- 441 (560)
T ss_pred eeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHc----------------
Confidence 5689999999973 34444444477 67777777765554 45555555543321
Q ss_pred hhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 006458 568 QKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQ 603 (644)
Q Consensus 568 ~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~ 603 (644)
+-.+..++++.+..|.++-+--+.|+|++++..+-
T Consensus 442 -~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 442 -GRNVKGLSPDALALLLRYDWPGNVRELENVIERAV 476 (560)
T ss_pred -CCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 11234589999999998876668899999985433
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.40 E-value=6.3e-12 Score=134.18 Aligned_cols=239 Identities=19% Similarity=0.170 Sum_probs=135.8
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----CchhHHHH
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----LGPQAVTK 446 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----~g~~~~~~ 446 (644)
..++|.+.+...+...+. .+ +++||.||||||||++++.+|..++.+|+.+.|..... +|......
T Consensus 24 ~~~~g~~~~~~~~l~a~~-------~~---~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~ 93 (329)
T COG0714 24 KVVVGDEEVIELALLALL-------AG---GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAA 93 (329)
T ss_pred CeeeccHHHHHHHHHHHH-------cC---CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhh
Confidence 446776666655533221 12 45999999999999999999999999999999875432 22221111
Q ss_pred H---HHHHHHHHhcCCC---eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh----CCC-----CCCEEEEEEeC--
Q 006458 447 I---HQLFDWAKKSKRG---LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----GDQ-----SKDIVLALATN-- 509 (644)
Q Consensus 447 l---~~~f~~a~~~~~~---~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~----~~~-----~~~viiI~ttN-- 509 (644)
. ...|.+...--.. +|+|+|||++. .+..+.+|..++... ... +..+++|+|+|
T Consensus 94 ~~~~~~~~~~~~gpl~~~~~~ill~DEInra---------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 94 LLLEPGEFRFVPGPLFAAVRVILLLDEINRA---------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhccCCeEEEecCCcccccceEEEEeccccC---------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 1 1111111100011 39999999985 334445555555441 112 36788888989
Q ss_pred ---CCCCCCHHHhcccceeEecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCCcchh-hhhhhhhhhhccCCCHHHHHHHH
Q 006458 510 ---RPGDLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHR-LFKSEQQKIEIKGLTDDILMEAA 584 (644)
Q Consensus 510 ---~~~~ld~al~~Rfd~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~l~~LA 584 (644)
....+++++++||...+++++|+. .+...++..................+.. .+......+.-..++++...++.
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIV 244 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHH
Confidence 455789999999999999999944 4444444433321100000000000000 00111111222335566555543
Q ss_pred HH---c-------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 585 AK---T-------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 585 ~~---t-------~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
.. + .|-|++....++..+.+.+.-........+++.........
T Consensus 245 ~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~ 298 (329)
T COG0714 245 TLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALA 298 (329)
T ss_pred HHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhh
Confidence 33 2 23467888888877777776666667777777766655543
No 170
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.40 E-value=1.7e-11 Score=120.69 Aligned_cols=167 Identities=19% Similarity=0.296 Sum_probs=125.0
Q ss_pred hccCCCCCCccccChHHHHHHHH-HHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC
Q 006458 363 ASKNGNGFGDVILHPSLQKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP 438 (644)
Q Consensus 363 ~~~~~~~~~~vig~~~~~~~l~~-l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~ 438 (644)
+..++..+.+++|.+..++.+.. ..... .|.|-.|+||+|..|||||+++|++-+++ |..++.|+-.++.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~-----~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~- 125 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFA-----EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA- 125 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHH-----cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-
Confidence 34555678999999999888833 32222 45677899999999999999999998887 5667777766654
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH-hCCCCCCEEEEEEeCCCCCCC--
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQSKDIVLALATNRPGDLD-- 515 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~-~~~~~~~viiI~ttN~~~~ld-- 515 (644)
.+-.+++..+.....-|||+||+-- ...+.....|..+|.. +...+.||+|.+|+|+...++
T Consensus 126 -------~Lp~l~~~Lr~~~~kFIlFcDDLSF--------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 126 -------TLPDLVELLRARPEKFILFCDDLSF--------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred -------hHHHHHHHHhcCCceEEEEecCCCC--------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHh
Confidence 4445777777777788999999843 1122445566666654 456889999999999854332
Q ss_pred ------------H--------HHhcccceeEecCCCCHHHHHHHHHHHHHHHhhh
Q 006458 516 ------------S--------AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQ 550 (644)
Q Consensus 516 ------------~--------al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~ 550 (644)
+ .|-+||+..+.|.+++.++-..|+..|+.++.+.
T Consensus 191 ~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred hhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 1 3446999999999999999999999999887543
No 171
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.4e-10 Score=116.50 Aligned_cols=219 Identities=21% Similarity=0.167 Sum_probs=153.5
Q ss_pred HHHhhhhhhcCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCcCCCCCccccCCCCCCccCCCCCchh
Q 006458 14 LAAASASACSQPNTAFADGPLNFSPFSFGTSSQSGQSQPSDLPQPPAAAAGDKSASAPAPARVRNDQPRTTSAGFDPEPL 93 (644)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (644)
|++++.++...|........|+.|.|.++++| .+|+||-||..+++ + ++.....++.|+ ..++-...++
T Consensus 5 c~a~~i~a~~~S~~~~~nka~ad~~f~~~~fs------~sp~~~~pp~~~~~-~---~s~~~~~~~~p~-~~Pk~~~~gF 73 (630)
T KOG0742|consen 5 CAAGSISALAMSWLFGINKAYADSRFGFPGFS------ASPPPPLPPAQPGA-P---GSGDRGEGDRPD-PAPKDSWSGF 73 (630)
T ss_pred HHHHHHHHHHHHHHhccchhhccCCCCCCCCC------CCCCCCCCCCCCCC-C---CCCcccccCCCC-CCccccccCC
Confidence 33333455555555566669999999888886 55544333333322 1 122222233333 3344445578
Q ss_pred hHHH--HHHHHHhcCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006458 94 ERGA--KLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQAENERQRVIYDEQRKLAQHNAQTKSQMARYE 171 (644)
Q Consensus 94 er~a--~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~~~y~ 171 (644)
...+ +|++.|....|...+ .+..|..+.+| +++.+|.+......++.+.+.+.|..|+..+++.+.-+..+|.+
T Consensus 74 DpeaLERaAKAlrein~s~~a---K~vfel~r~qE-~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k 149 (630)
T KOG0742|consen 74 DPEALERAAKALREINHSPYA---KDVFELARMQE-QTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQK 149 (630)
T ss_pred ChHHHHHHHHHHHhhccCccH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777 899999999999998 88899999999 99999999999999999999999999998888877766666554
Q ss_pred HHHHHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 006458 172 DELARKRMQAENEYHRARNQ--ELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAE---AEGRA 246 (644)
Q Consensus 172 d~l~r~~~~~e~e~~~~~~~--~~~~~~~e~~~r~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e---~~~~~ 246 (644)
. .|-+|++++..++.+.+ ....+++|.+..||+--. ..+..++.++++...+++++++.+++.| .+.++
T Consensus 150 ~--q~arYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~i----rqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA 223 (630)
T KOG0742|consen 150 Q--QRARYQDKLARKRYEDELEAQRRLNEELVRMQEESVI----RQEQARRATEEQIQAQRRKTEMERAEAERETIRVKA 223 (630)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH----HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4 46689999988777643 222334455555555432 3445889999999999999999999988 55666
Q ss_pred HHHHHhh
Q 006458 247 HEAKLAE 253 (644)
Q Consensus 247 ~~~~~~~ 253 (644)
..+++.+
T Consensus 224 ~Aeaegr 230 (630)
T KOG0742|consen 224 KAEAEGR 230 (630)
T ss_pred HHhhhcc
Confidence 6665543
No 172
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.39 E-value=2.2e-11 Score=122.45 Aligned_cols=129 Identities=20% Similarity=0.191 Sum_probs=93.2
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-------------CCCCCHHHhcccceeE
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-------------PGDLDSAVADRIDEVL 526 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-------------~~~ld~al~~Rfd~~i 526 (644)
|+||||||++.| .-..|..|.+.++..- ..++|++||+ |..+++.+++|+ .+|
T Consensus 297 PGVLFIDEVhML------------DiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHML------------DIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LII 362 (456)
T ss_pred CcceEeeehhhh------------hhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEE
Confidence 579999999986 2234444544454333 3466778775 667899999999 889
Q ss_pred ecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHH--HHHH
Q 006458 527 EFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMA--SVQA 604 (644)
Q Consensus 527 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~--~~~a 604 (644)
..-+++.++.++|++.......+. ++++.++.++.....-|-|---+|+. .+.+
T Consensus 363 rt~~y~~~e~r~Ii~~Ra~~E~l~------------------------~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 363 RTLPYDEEEIRQIIKIRAQVEGLQ------------------------VEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred eeccCCHHHHHHHHHHHHhhhcce------------------------ecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 888999999999999987654332 78899999998866667777777773 3344
Q ss_pred HHhCCCCCccCHHHHHHHHHHHHH
Q 006458 605 AVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 605 a~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
-.+++ ..|..++++++-+.+..
T Consensus 419 k~~g~--~~i~v~dvee~~~Lf~D 440 (456)
T KOG1942|consen 419 KTNGR--KEISVEDVEEVTELFLD 440 (456)
T ss_pred HHcCC--ceeecccHHHHHHHHHh
Confidence 44443 67778888887766653
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.39 E-value=1.9e-11 Score=141.00 Aligned_cols=241 Identities=16% Similarity=0.180 Sum_probs=145.6
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-----------------------
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----------------------- 425 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~----------------------- 425 (644)
.|..|||++.++..+...+. +. ...+|||+|+||||||++|++|+..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~-----~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DP-----RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CC-----CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 38899999998877743221 11 124699999999999999999999882
Q ss_pred ------------CCeEEEeCCCCCC--CchhHHHHHHHHHHH--------HHhcCCCeEEEEeccchhhhccccCcCCHH
Q 006458 426 ------------LDYALMTGGDVAP--LGPQAVTKIHQLFDW--------AKKSKRGLLLFIDEADAFLCERNKTYMSEA 483 (644)
Q Consensus 426 ------------~~~~~i~~~~l~~--~g~~~~~~l~~~f~~--------a~~~~~~~VL~IDEid~l~~~r~~~~~~~~ 483 (644)
.+|+.+.++.... +|+.. +...+.. ......++||||||++.| +..
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d---~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------~~~ 141 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD---IERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------DDH 141 (633)
T ss_pred hhhcccccccCCCCeeeCCCCCcHHHcCCccc---HHHHhhcCCeeecCcceeecCCCeEEeChhhhC---------CHH
Confidence 3455444332111 11110 1111100 000112469999999997 334
Q ss_pred HHHHHHHHHHHh----C------CCCCCEEEEEEeCCC-CCCCHHHhcccceeEecCCCC-HHHHHHHHHHHHHHHhhhh
Q 006458 484 QRSALNALLFRT----G------DQSKDIVLALATNRP-GDLDSAVADRIDEVLEFPLPG-QEERFKLLKLYLDKYIAQA 551 (644)
Q Consensus 484 ~~~~l~~lL~~~----~------~~~~~viiI~ttN~~-~~ld~al~~Rfd~~i~~~~p~-~~er~~Il~~~l~~~~~~~ 551 (644)
.+..|..++..- . ....++++|+|+|.. ..+.++|++||+..|.++.+. .+++..|+...+.... .+
T Consensus 142 ~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~-~~ 220 (633)
T TIGR02442 142 LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDA-DP 220 (633)
T ss_pred HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhcc-Cc
Confidence 444444444321 0 123568999999964 468999999999999998875 5778888876543110 00
Q ss_pred CCCCCCcch---hhhhhh----hhhhhccCCCHHHHHHHHHHc--CCC-cHHHHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 006458 552 GSRKPGLVH---RLFKSE----QQKIEIKGLTDDILMEAAAKT--EGF-SGREIAKLMASVQAAVYGSENCVLDPSLFRE 621 (644)
Q Consensus 552 ~~~~~~~~~---~~~~~~----~~~~~~~~~~d~~l~~LA~~t--~G~-SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~ 621 (644)
... ...|. ..+.+. ........++++.+..|+..+ -|. |.|-...++..+.+.+.-.+...++.+|+..
T Consensus 221 ~~~-~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~ 299 (633)
T TIGR02442 221 EAF-AARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVRE 299 (633)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 000 00000 001010 111112246888888877765 245 4666777777777777667779999999999
Q ss_pred HHHHHHHhHH
Q 006458 622 VVDYKVAEHQ 631 (644)
Q Consensus 622 al~~~~~~~~ 631 (644)
++........
T Consensus 300 A~~lvL~hR~ 309 (633)
T TIGR02442 300 AAELVLPHRR 309 (633)
T ss_pred HHHHHhhhhc
Confidence 9999886543
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=3.8e-12 Score=135.75 Aligned_cols=149 Identities=22% Similarity=0.209 Sum_probs=111.4
Q ss_pred CCcccc-ChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC---------------------
Q 006458 370 FGDVIL-HPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------------- 427 (644)
Q Consensus 370 ~~~vig-~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~--------------------- 427 (644)
|+.|+| ++.+.+.+...+. .+..+..+|||||+|+|||++|+.+|+.+.++
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~-------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~ 76 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIA-------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGN 76 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCC
Confidence 788998 8888888866542 23344568999999999999999999986321
Q ss_pred ---eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCC
Q 006458 428 ---YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD 501 (644)
Q Consensus 428 ---~~~i~~~~l~~~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~ 501 (644)
+..+.... ... ....++.+...+. ....+.|+|||++|.| .....|.||+.+++.+.+
T Consensus 77 hpD~~~i~~~~-~~i---~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~------------~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 77 HPDVHLVAPDG-QSI---KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM------------TASAANSLLKFLEEPSGG 140 (329)
T ss_pred CCCEEEecccc-ccC---CHHHHHHHHHHHhhCCcccCceEEEeehHhhh------------CHHHHHHHHHHhcCCCCC
Confidence 22221110 001 1334555554443 2234579999999986 345789999999999999
Q ss_pred EEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHH
Q 006458 502 IVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKL 542 (644)
Q Consensus 502 viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~ 542 (644)
++||++|+.+..+.+.+++|+ .+++|++|+.++...++..
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 999999999999999999999 9999999999988777754
No 175
>PHA02244 ATPase-like protein
Probab=99.38 E-value=7.6e-12 Score=132.46 Aligned_cols=125 Identities=25% Similarity=0.306 Sum_probs=86.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC----CCC-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccc
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGD----VAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERN 476 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~----l~~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~ 476 (644)
++||+||||||||++|++||..++.+|+.+++.. +.. ..... .....-|..+. ..+++|||||++.+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g-~~~dgpLl~A~--~~GgvLiLDEId~a----- 192 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANG-KFHETPFYEAF--KKGGLFFIDEIDAS----- 192 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccc-cccchHHHHHh--hcCCEEEEeCcCcC-----
Confidence 4999999999999999999999999999998431 111 01110 00111222332 34789999999986
Q ss_pred cCcCCHHHHHHHHHHHHH-----hC---CCCCCEEEEEEeCCC-----------CCCCHHHhcccceeEecCCCCHHHHH
Q 006458 477 KTYMSEAQRSALNALLFR-----TG---DQSKDIVLALATNRP-----------GDLDSAVADRIDEVLEFPLPGQEERF 537 (644)
Q Consensus 477 ~~~~~~~~~~~l~~lL~~-----~~---~~~~~viiI~ttN~~-----------~~ld~al~~Rfd~~i~~~~p~~~er~ 537 (644)
+......|+.++.. .+ ..+.++.||+|+|.+ ..+++++++|| .+|+|++|+..+.
T Consensus 193 ----~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E~- 266 (383)
T PHA02244 193 ----IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIEH- 266 (383)
T ss_pred ----CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHHH-
Confidence 33455566666642 11 135789999999973 46799999999 7899999984333
Q ss_pred HHH
Q 006458 538 KLL 540 (644)
Q Consensus 538 ~Il 540 (644)
.|+
T Consensus 267 ~i~ 269 (383)
T PHA02244 267 LIS 269 (383)
T ss_pred HHh
Confidence 444
No 176
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.38 E-value=1.3e-11 Score=139.12 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=147.0
Q ss_pred CCccccChHHHHHHHHHH-HHhhchhccC---CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEE-eCCCCCCCchhHH
Q 006458 370 FGDVILHPSLQKRIRQLS-GATANTKAHN---APFRNMLFYGPPGTGKTMAARELARKSGLDYALM-TGGDVAPLGPQAV 444 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~-~~~~~~~~~~---~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i-~~~~l~~~g~~~~ 444 (644)
.-.++|++.++..+.-.+ .........+ ....|+||+|+||||||++++.+++.+....+.. .+....++.....
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 455678888776663322 1111111111 1123799999999999999999999876443221 1111111100000
Q ss_pred HH-HHHHH---HHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh----C------CCCCCEEEEEEeCC
Q 006458 445 TK-IHQLF---DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----G------DQSKDIVLALATNR 510 (644)
Q Consensus 445 ~~-l~~~f---~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~----~------~~~~~viiI~ttN~ 510 (644)
.. ...-+ ..+.....+++|+|||++.+ ....+..|...+..- . ..+.++.||+|+|.
T Consensus 282 ~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l---------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP 352 (509)
T smart00350 282 RDPETREFTLEGGALVLADNGVCCIDEFDKM---------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANP 352 (509)
T ss_pred EccCcceEEecCccEEecCCCEEEEechhhC---------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCC
Confidence 00 00000 00111123579999999997 334455555554321 1 12367899999997
Q ss_pred CC-------------CCCHHHhcccceeEec-CCCCHHHHHHHHHHHHHHHhhhhC---CCCCCcc-hhhhhhhhhhh--
Q 006458 511 PG-------------DLDSAVADRIDEVLEF-PLPGQEERFKLLKLYLDKYIAQAG---SRKPGLV-HRLFKSEQQKI-- 570 (644)
Q Consensus 511 ~~-------------~ld~al~~Rfd~~i~~-~~p~~~er~~Il~~~l~~~~~~~~---~~~~~~~-~~~~~~~~~~~-- 570 (644)
.. .|++++++|||.++.+ +.|+.+....|+++.+........ ......+ ...++.+-...
T Consensus 353 ~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~ 432 (509)
T smart00350 353 IGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYARE 432 (509)
T ss_pred CCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHh
Confidence 52 5899999999987655 889999999999988764321100 0000111 22333332111
Q ss_pred -hccCCCHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 571 -EIKGLTDDILMEAAAKT---------------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 571 -~~~~~~d~~l~~LA~~t---------------~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
-.+.++++..+.|...+ -+.|.|.+..|++..+|.+.-.....++.+|+..+++-..
T Consensus 433 ~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 433 KIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 11347887777665432 1458899999999988888888889999999999998764
No 177
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.36 E-value=1.5e-11 Score=139.69 Aligned_cols=216 Identities=20% Similarity=0.211 Sum_probs=139.6
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhH
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA 443 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~ 443 (644)
...|+++||.......+...+...... . .+|||+|++|||||++|++|.... +.+|+.++|..+.... .
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~---~---~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~--~ 263 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARS---N---STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL--L 263 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCc---C---CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH--H
Confidence 367999999988887776655444322 2 249999999999999999999885 5799999998874310 0
Q ss_pred HHHH----HHHHHHH-------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCCEEE
Q 006458 444 VTKI----HQLFDWA-------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVL 504 (644)
Q Consensus 444 ~~~l----~~~f~~a-------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~vii 504 (644)
...+ ...|..+ .....+++||||||+.| +...+..|..++..-. . ...++.|
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ri 334 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI---------SPAFQAKLLRVLQEGEFERVGGNRTLKVDVRL 334 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC---------CHHHHHHHHHHHhcCcEEECCCCceEeecEEE
Confidence 0000 0001000 00123679999999997 3455555555554321 0 1236889
Q ss_pred EEEeCCC-------CCCCHHHhcccc-eeEecCCCC--HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 505 ALATNRP-------GDLDSAVADRID-EVLEFPLPG--QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 505 I~ttN~~-------~~ld~al~~Rfd-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
|+||+.. ..|.+.|..|+. ..|.+|++. .+++..|++.++.++....+ .. ..
T Consensus 335 I~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~-----------------~~-~~ 396 (534)
T TIGR01817 335 VAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG-----------------RP-LT 396 (534)
T ss_pred EEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC-----------------CC-CC
Confidence 9988753 467788888884 345666554 35667788888876542211 11 23
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 620 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~ 620 (644)
++++.+..|..+...-+.++|.+++..+- ....+..|+.+++.
T Consensus 397 ~s~~a~~~L~~~~WPGNvrEL~~v~~~a~---~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 397 ITPSAIRVLMSCKWPGNVRELENCLERTA---TLSRSGTITRSDFS 439 (534)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHH---HhCCCCcccHHHCc
Confidence 89999999999876667788888775332 22345678887764
No 178
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.3e-11 Score=124.66 Aligned_cols=153 Identities=20% Similarity=0.291 Sum_probs=97.3
Q ss_pred eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC----------CCCCEEEEEEe----CCCCCCCHHHhcccceeE
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVL 526 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----------~~~~viiI~tt----N~~~~ld~al~~Rfd~~i 526 (644)
+||||||||+++.+...+.....-..+...+|-.++. ...+++||++. ..|++|-|.|..||+..+
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRV 331 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV 331 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEE
Confidence 4999999999987654332222334456666655532 33467777753 458999999999999999
Q ss_pred ecCCCCHHHHHHHHHH----HHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc-------CCCcHHHH
Q 006458 527 EFPLPGQEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-------EGFSGREI 595 (644)
Q Consensus 527 ~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-------~G~SgrdI 595 (644)
++..++.++..+||.. .+++|.. +++...-.+ .++++.++.||..+ +....|-|
T Consensus 332 EL~~Lt~~Df~rILtep~~sLikQY~a------------LlkTE~v~l---~FtddaI~~iAeiA~~vN~~~ENIGARRL 396 (444)
T COG1220 332 ELDALTKEDFERILTEPKASLIKQYKA------------LLKTEGVEL---EFTDDAIKRIAEIAYQVNEKTENIGARRL 396 (444)
T ss_pred EcccCCHHHHHHHHcCcchHHHHHHHH------------HHhhcCeeE---EecHHHHHHHHHHHHHhcccccchhHHHH
Confidence 9999999999988742 3333322 222221112 37899999998774 44445555
Q ss_pred HHHHH-HHHHHHh-----CCCCCccCHHHHHHHHHHHHH
Q 006458 596 AKLMA-SVQAAVY-----GSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 596 ~~L~~-~~~aa~~-----~~~~~~lt~~~~~~al~~~~~ 628 (644)
..++. .+....| ......||.+.+..-+...+.
T Consensus 397 hTvlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~~ 435 (444)
T COG1220 397 HTVLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLVA 435 (444)
T ss_pred HHHHHHHHHHhCccCCcCCCCeEEEcHHHHHHHHHHHhc
Confidence 55552 2233333 333457788877777665543
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.35 E-value=9.7e-12 Score=119.11 Aligned_cols=135 Identities=22% Similarity=0.359 Sum_probs=92.0
Q ss_pred cChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------------CeEEE
Q 006458 375 LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-----------------------DYALM 431 (644)
Q Consensus 375 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~-----------------------~~~~i 431 (644)
|++.+.+.|..++. .+..+..+||+||+|+||+++|..+|+.+-. +++.+
T Consensus 1 gq~~~~~~L~~~~~-------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHH-------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHH-------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 56666666655442 2333445899999999999999999998621 23444
Q ss_pred eCCCCC-CCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEE
Q 006458 432 TGGDVA-PLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALA 507 (644)
Q Consensus 432 ~~~~l~-~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~t 507 (644)
+..... ..+ ...++.+..+... ..++.|++||++|.| .....|.||+.+++.+.+++||++
T Consensus 74 ~~~~~~~~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 74 KPDKKKKSIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp ETTTSSSSBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ecccccchhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcCCCCCEEEEEE
Confidence 333221 122 3444555554432 234679999999997 456899999999999999999999
Q ss_pred eCCCCCCCHHHhcccceeEecCCCC
Q 006458 508 TNRPGDLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 508 tN~~~~ld~al~~Rfd~~i~~~~p~ 532 (644)
|+.++.+.+.++||+ ..+.|++++
T Consensus 139 t~~~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTS-EEEEE----
T ss_pred ECChHHChHHHHhhc-eEEecCCCC
Confidence 999999999999999 888888653
No 180
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.34 E-value=1.8e-11 Score=130.31 Aligned_cols=196 Identities=19% Similarity=0.175 Sum_probs=120.3
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--chhHHHHH
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GPQAVTKI 447 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~~~~~~l 447 (644)
+||.......+...+..... ... +|||+|++||||+++|++|.... +.||+.++|+.+... .....+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~---~~~---pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP---LDR---PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC---CCC---CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccc
Confidence 45666666666554444332 222 39999999999999999997765 479999999876431 00000000
Q ss_pred HHHHHHH-------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCC-
Q 006458 448 HQLFDWA-------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRP- 511 (644)
Q Consensus 448 ~~~f~~a-------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~ttN~~- 511 (644)
...|..+ .....+++||||||+.| +...+..|..+++.-. ....++.||++||..
T Consensus 75 ~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l 145 (329)
T TIGR02974 75 AGAFTGAQKRHQGRFERADGGTLFLDELATA---------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADL 145 (329)
T ss_pred cccccCcccccCCchhhCCCCEEEeCChHhC---------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhH
Confidence 0011101 01123679999999997 4455666666664321 123578999998753
Q ss_pred ------CCCCHHHhcccc-eeEecCCCC--HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhc-cCCCHHHHH
Q 006458 512 ------GDLDSAVADRID-EVLEFPLPG--QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI-KGLTDDILM 581 (644)
Q Consensus 512 ------~~ld~al~~Rfd-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~l~ 581 (644)
..+.+.|..||. ..|.+|++. .+++..|++.|+.++.... +..+ ..++++.+.
T Consensus 146 ~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-----------------~~~~~~~ls~~a~~ 208 (329)
T TIGR02974 146 PALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-----------------GLPLFPGFTPQARE 208 (329)
T ss_pred HHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh-----------------CCCCCCCcCHHHHH
Confidence 467788888993 344444443 2445556666665543221 1111 248999999
Q ss_pred HHHHHcCCCcHHHHHHHHH
Q 006458 582 EAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 582 ~LA~~t~G~SgrdI~~L~~ 600 (644)
.|..+..--+.++|.+++.
T Consensus 209 ~L~~y~WPGNvrEL~n~i~ 227 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVE 227 (329)
T ss_pred HHHhCCCCchHHHHHHHHH
Confidence 9999876667788888775
No 181
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.33 E-value=1e-11 Score=126.88 Aligned_cols=191 Identities=20% Similarity=0.198 Sum_probs=135.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC------eEEEeCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD------YALMTGGDVA 437 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~------~~~i~~~~l~ 437 (644)
.+++..+++++++.++...+..+. ..++. +|+|||||||||||+...+.|..+-.+ +..++.++-.
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~------~~~~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYS------GMPGL--PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhc------cCCCC--CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 566778999999999888887762 11222 389999999999999999999987543 2234444433
Q ss_pred CCchhHHHHHHHHHHHHHh------cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 438 PLGPQAVTKIHQLFDWAKK------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 438 ~~g~~~~~~l~~~f~~a~~------~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
+. +.+..-...|..... .....+++|||+|.+ .+.+.|.|-..++....++.|+..+|.+
T Consensus 106 gi--d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM------------T~~AQnALRRviek~t~n~rF~ii~n~~ 171 (360)
T KOG0990|consen 106 GI--DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM------------TRDAQNALRRVIEKYTANTRFATISNPP 171 (360)
T ss_pred CC--cchHHHHHHHHhhccceeccccCceeEEEecchhHh------------hHHHHHHHHHHHHHhccceEEEEeccCh
Confidence 33 333333334444432 124679999999996 4556666667778888999999999999
Q ss_pred CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 512 GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 512 ~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
..+.|++++|| ..+.|.+.+.......+.+.++.-... ++++....+++.+
T Consensus 172 ~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~~------------------------~~~~~~~a~~r~s---- 222 (360)
T KOG0990|consen 172 QKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQKE------------------------TNPEGYSALGRLS---- 222 (360)
T ss_pred hhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchhh------------------------cCHHHHHHHHHHh----
Confidence 99999999999 788899888888888888887653321 5555666666554
Q ss_pred HHHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAA 605 (644)
Q Consensus 592 grdI~~L~~~~~aa 605 (644)
..|+...++-++..
T Consensus 223 ~gDmr~a~n~Lqs~ 236 (360)
T KOG0990|consen 223 VGDMRVALNYLQSI 236 (360)
T ss_pred HHHHHHHHHHHHHH
Confidence 34666666555544
No 182
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.1e-11 Score=126.28 Aligned_cols=193 Identities=21% Similarity=0.322 Sum_probs=127.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC---CCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA---PLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCE 474 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~---~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~ 474 (644)
.||||.||+|+|||+|++.||+.++.||++.+|..+. ++|.+....|.+++..|.- ....+||||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 3699999999999999999999999999999999884 4666677778887766531 223479999999999744
Q ss_pred cccCc-----CCHHHHHHHHHHHHHhC----C--------------CCCCEEEEEEeCC--------------------C
Q 006458 475 RNKTY-----MSEAQRSALNALLFRTG----D--------------QSKDIVLALATNR--------------------P 511 (644)
Q Consensus 475 r~~~~-----~~~~~~~~l~~lL~~~~----~--------------~~~~viiI~ttN~--------------------~ 511 (644)
..+-+ ..+..++.|..|+...- . +..|++||+..-. +
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 32211 23345555555554311 0 2345666653210 0
Q ss_pred ------------C------------------------CCCHHHhcccceeEecCCCCHHHHHHHHHH----HHHHHhhhh
Q 006458 512 ------------G------------------------DLDSAVADRIDEVLEFPLPGQEERFKLLKL----YLDKYIAQA 551 (644)
Q Consensus 512 ------------~------------------------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~----~l~~~~~~~ 551 (644)
+ .+-|+|..||+.++.|..++.+++.+||.- .+.+|..
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~-- 464 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKK-- 464 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHH--
Confidence 0 134889999999999999999999888742 2222221
Q ss_pred CCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCcHHHHHHHHHHH-HHHHhC
Q 006458 552 GSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLMASV-QAAVYG 608 (644)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t--~G~SgrdI~~L~~~~-~aa~~~ 608 (644)
+|.-+.-.+ .++++.++.||+.. .+--.|-|+.++..+ ..+.|.
T Consensus 465 ----------lf~~~nV~L---~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 465 ----------LFGMDNVEL---HFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred ----------HhccCCeeE---EecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 111111111 37899999998874 444468899988543 444553
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=9e-11 Score=124.02 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=97.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCC------------------------CeEEEeCCCCCCCchhHHHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGL------------------------DYALMTGGDVAPLGPQAVTKIHQLFDWA 454 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~------------------------~~~~i~~~~l~~~g~~~~~~l~~~f~~a 454 (644)
.+..+||+||+|+||+++|+.+|+.+.+ +|+.+...+-...+ +..++.+...+
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~---id~iR~l~~~~ 99 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG---VDQVREINEKV 99 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC---HHHHHHHHHHH
Confidence 3346899999999999999999998732 12222211101122 34455554444
Q ss_pred Hh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCC
Q 006458 455 KK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 455 ~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p 531 (644)
.. ..+..|++||++|.| .....|.||+.+++.+.+++||++|+.++.+.|.++||| ..+.|++|
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m------------~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~ 166 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERL------------TEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPP 166 (325)
T ss_pred hhccccCCceEEEEechhhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc-eEEeCCCC
Confidence 32 334679999999997 356799999999999999999999999999999999999 99999999
Q ss_pred CHHHHHHHHHHH
Q 006458 532 GQEERFKLLKLY 543 (644)
Q Consensus 532 ~~~er~~Il~~~ 543 (644)
+.++....|...
T Consensus 167 ~~~~~~~~L~~~ 178 (325)
T PRK06871 167 EEQQALDWLQAQ 178 (325)
T ss_pred CHHHHHHHHHHH
Confidence 999888777654
No 184
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=6.3e-11 Score=126.20 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=97.0
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcCC------------------------CeEEEeCCCC-CCCchhHHHHHHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSGL------------------------DYALMTGGDV-APLGPQAVTKIHQLFD 452 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~~------------------------~~~~i~~~~l-~~~g~~~~~~l~~~f~ 452 (644)
..+..+||+||+|+||+++|.++|+.+-+ +++.+....- ...+ +..++.+..
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~---idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG---VDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC---HHHHHHHHH
Confidence 33456999999999999999999998732 1222221110 1122 334455544
Q ss_pred HHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecC
Q 006458 453 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 529 (644)
Q Consensus 453 ~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~ 529 (644)
.+.. ...+.|+|||++|+| .....|.||+.+++.+.+++||++|+.++.+.|.++||| ..+.|+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~~ 165 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALL------------TDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC-RLHYLA 165 (334)
T ss_pred HHhhccccCCceEEEEcchHhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-ccccCC
Confidence 4432 334679999999997 356899999999999999999999999999999999999 688999
Q ss_pred CCCHHHHHHHHHH
Q 006458 530 LPGQEERFKLLKL 542 (644)
Q Consensus 530 ~p~~~er~~Il~~ 542 (644)
+|+.++....|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (334)
T PRK07993 166 PPPEQYALTWLSR 178 (334)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888777653
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=8.6e-11 Score=123.98 Aligned_cols=130 Identities=25% Similarity=0.325 Sum_probs=96.3
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCC---------------------eEEEe--CCCCCC--CchhHHHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLD---------------------YALMT--GGDVAP--LGPQAVTKIHQLFDWA 454 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------------~~~i~--~~~l~~--~g~~~~~~l~~~f~~a 454 (644)
+..+||+||+|+||+++|..+|+.+.+. ++.+. ...-.. ...-.+..++.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 3459999999999999999999886321 22221 000000 0001244566666555
Q ss_pred Hhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCC
Q 006458 455 KKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 455 ~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p 531 (644)
... ..+.|++||++|.| .....|.||+.+++.+.+++||++|+.++.+.|.|+||| ..+.|+.|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~ 172 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAI------------NRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEFKLP 172 (319)
T ss_pred hhCcccCCcEEEEeccHhhh------------CHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeCCCc
Confidence 432 23579999999997 345789999999999999999999999999999999999 99999999
Q ss_pred CHHHHHHHHHH
Q 006458 532 GQEERFKLLKL 542 (644)
Q Consensus 532 ~~~er~~Il~~ 542 (644)
+.++....|..
T Consensus 173 ~~~~~~~~L~~ 183 (319)
T PRK08769 173 PAHEALAWLLA 183 (319)
T ss_pred CHHHHHHHHHH
Confidence 99887776653
No 186
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.29 E-value=1.1e-10 Score=117.97 Aligned_cols=134 Identities=21% Similarity=0.215 Sum_probs=105.0
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------------CCCCCHHHhcccceeEe
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------PGDLDSAVADRIDEVLE 527 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~------------~~~ld~al~~Rfd~~i~ 527 (644)
|+||||||++.| .-....+||.-| +++..+ ++|++||+ |..++-.|++|+ .+|.
T Consensus 289 pGVLFIDEvHML---------DIEcFsFlNrAl---E~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~ 354 (454)
T KOG2680|consen 289 PGVLFIDEVHML---------DIECFSFLNRAL---ENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIIS 354 (454)
T ss_pred cceEEEeeehhh---------hhHHHHHHHHHh---hhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heee
Confidence 579999999986 223445555554 333444 55666664 678899999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 006458 528 FPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 607 (644)
Q Consensus 528 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~ 607 (644)
..+++.++...||+..+...... ++++.++.|......-|-|--..|+.+....+.
T Consensus 355 t~py~~~d~~~IL~iRc~EEdv~------------------------m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~ 410 (454)
T KOG2680|consen 355 TQPYTEEDIKKILRIRCQEEDVE------------------------MNPDALDLLTKIGEATSLRYAIHLITAASLVCL 410 (454)
T ss_pred cccCcHHHHHHHHHhhhhhhccc------------------------cCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999775432 788899999888777788888888877777777
Q ss_pred CCCCCccCHHHHHHHHHHHHHhHH
Q 006458 608 GSENCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 608 ~~~~~~lt~~~~~~al~~~~~~~~ 631 (644)
.+...++..+++..+...+..+.+
T Consensus 411 krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 411 KRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred HhcCceeehhHHHHHHHHHhhhhh
Confidence 788899999999999988876553
No 187
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.28 E-value=6.7e-11 Score=131.99 Aligned_cols=227 Identities=21% Similarity=0.237 Sum_probs=131.9
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC----------------------
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------------------- 425 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---------------------- 425 (644)
..|.+|+|+..++..+...+ . ...+++|+||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa-------~---~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA-------A---GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc-------c---CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 36899999988877664332 1 124699999999999999999987541
Q ss_pred ------CCeEEEeCCCCC--CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-
Q 006458 426 ------LDYALMTGGDVA--PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG- 496 (644)
Q Consensus 426 ------~~~~~i~~~~l~--~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~- 496 (644)
.||....++... -+|+... .-...+.. ..+++|||||++.| +......|...|..-.
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~~-~~pG~i~l----A~~GvLfLDEi~e~---------~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGPI-PLPGEISL----AHNGVLFLDELPEF---------KRSVLDALREPIEDGSI 324 (499)
T ss_pred ccccccCCccccccccchhhhhCCccc-cchhhhhc----cCCCeEecCChhhC---------CHHHHHHHHHHHHcCcE
Confidence 111111111000 0111100 00111222 22579999999987 3344455555543211
Q ss_pred ---------CCCCCEEEEEEeCCC-----C------------------CCCHHHhcccceeEecCCCCHHHH--------
Q 006458 497 ---------DQSKDIVLALATNRP-----G------------------DLDSAVADRIDEVLEFPLPGQEER-------- 536 (644)
Q Consensus 497 ---------~~~~~viiI~ttN~~-----~------------------~ld~al~~Rfd~~i~~~~p~~~er-------- 536 (644)
..+.++.+|+++|.. . .++.+|++|||.++.++.++..+.
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~ 404 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGES 404 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCC
Confidence 124689999999863 1 488999999999999998876543
Q ss_pred -----HHHHHHHHHHHhhhhCC---C-CCCcchhhhhhhhhhhhccCCCHHH---HHHHHHHcCCCcHHHHHHHHHHHHH
Q 006458 537 -----FKLLKLYLDKYIAQAGS---R-KPGLVHRLFKSEQQKIEIKGLTDDI---LMEAAAKTEGFSGREIAKLMASVQA 604 (644)
Q Consensus 537 -----~~Il~~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~d~~---l~~LA~~t~G~SgrdI~~L~~~~~a 604 (644)
.++.+.+-.....-.+. . ...+....+ .+ +..++++. +....... ++|.|.+.++++.+..
T Consensus 405 s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l----~~--~~~l~~~~~~~l~~a~~~~-~lS~R~~~rilrvArT 477 (499)
T TIGR00368 405 SAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEI----EQ--FCKLSAIDANDLEGALNKL-GLSSRATHRILKVART 477 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHH----Hh--hcCCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHH
Confidence 22222211110000000 0 000000011 11 11244443 33444443 6899999999988888
Q ss_pred HHhCCCCCccCHHHHHHHHHH
Q 006458 605 AVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 605 a~~~~~~~~lt~~~~~~al~~ 625 (644)
.+.-.+...++.+|+.+|+.+
T Consensus 478 iAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHhc
Confidence 887777799999999999875
No 188
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.28 E-value=9.8e-11 Score=131.50 Aligned_cols=202 Identities=22% Similarity=0.256 Sum_probs=123.0
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHH-----------cCCCeEEEeCCCC
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK-----------SGLDYALMTGGDV 436 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~-----------l~~~~~~i~~~~l 436 (644)
..|++++|.......+...+....... .+|||+|++||||+++|++|-.. .+.||+.+||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal 289 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 289 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccC
Confidence 469999999888887766554433222 24999999999999999999877 3579999999987
Q ss_pred CCC--chhHHHHH------------HHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC------
Q 006458 437 APL--GPQAVTKI------------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------ 496 (644)
Q Consensus 437 ~~~--g~~~~~~l------------~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~------ 496 (644)
... .....+.. ..+|..+ .++.||||||+.| +...+..|..+|+.-.
T Consensus 290 ~e~lleseLFG~~~gaftga~~~~~~Gl~e~A----~gGTLfLdeI~~L---------p~~~Q~kLl~~L~e~~~~r~G~ 356 (538)
T PRK15424 290 AESLLEAELFGYEEGAFTGSRRGGRAGLFEIA----HGGTLFLDEIGEM---------PLPLQTRLLRVLEEKEVTRVGG 356 (538)
T ss_pred ChhhHHHHhcCCccccccCccccccCCchhcc----CCCEEEEcChHhC---------CHHHHHHHHhhhhcCeEEecCC
Confidence 531 00000000 1123222 2578999999997 4456666666665421
Q ss_pred --CCCCCEEEEEEeCCC-------CCCCHHHhcccceeEecCCCCHHHHH----HHHHHHHHHHhhhhCCCCCCcchhhh
Q 006458 497 --DQSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERF----KLLKLYLDKYIAQAGSRKPGLVHRLF 563 (644)
Q Consensus 497 --~~~~~viiI~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er~----~Il~~~l~~~~~~~~~~~~~~~~~~~ 563 (644)
....++.||++||.. ..|.+.+..|+ ..+.+..|...+|. .|+..++.++....+.. +
T Consensus 357 ~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~--------~ 427 (538)
T PRK15424 357 HQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAP--------F 427 (538)
T ss_pred CceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--------C
Confidence 123467899988763 24666777777 55666666665554 45666665532111000 0
Q ss_pred hhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 006458 564 KSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASV 602 (644)
Q Consensus 564 ~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~ 602 (644)
. +..+ .+.++.+..|..+..-.+.|+|.+++..+
T Consensus 428 ~--~~a~---~~~~~a~~~L~~y~WPGNvREL~nvier~ 461 (538)
T PRK15424 428 S--AALR---QGLQQCETLLLHYDWPGNVRELRNLMERL 461 (538)
T ss_pred C--HHHH---HhhHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 0 0000 02233446677666656778898888643
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=1.3e-11 Score=114.77 Aligned_cols=110 Identities=26% Similarity=0.331 Sum_probs=69.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCC----chhH-----HHHHHHHHHHHHhcCCCeEEEEeccchhh
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL----GPQA-----VTKIHQLFDWAKKSKRGLLLFIDEADAFL 472 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~----g~~~-----~~~l~~~f~~a~~~~~~~VL~IDEid~l~ 472 (644)
+|||+||||||||++++.+|..++.+++.++++..... |.-. .......+..+. ..++|+||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 48999999999999999999999999999988764321 0000 000000000011 13789999999985
Q ss_pred hccccCcCCHHHHHHHHHHHHHhC----C------CCC------CEEEEEEeCCCC----CCCHHHhccc
Q 006458 473 CERNKTYMSEAQRSALNALLFRTG----D------QSK------DIVLALATNRPG----DLDSAVADRI 522 (644)
Q Consensus 473 ~~r~~~~~~~~~~~~l~~lL~~~~----~------~~~------~viiI~ttN~~~----~ld~al~~Rf 522 (644)
.+.....|+.++..-. . ... ++.||+|+|... .++++|+|||
T Consensus 78 --------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 --------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred --------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2233444444443211 0 111 499999999988 9999999998
No 190
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.27 E-value=3.3e-10 Score=116.90 Aligned_cols=223 Identities=21% Similarity=0.237 Sum_probs=139.5
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC---------CCeEEEeCCCCCC--
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------LDYALMTGGDVAP-- 438 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---------~~~~~i~~~~l~~-- 438 (644)
-+..||++.+...+..+......++.... .|+||+|++|.|||++++.+++... .|++.+.+..-..
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rm--p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRM--PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCC--CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 36679999999999887776665544333 4799999999999999999987752 4666665433211
Q ss_pred -------------C-chhHHHHH-HHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-CCCCCE
Q 006458 439 -------------L-GPQAVTKI-HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDI 502 (644)
Q Consensus 439 -------------~-g~~~~~~l-~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-~~~~~v 502 (644)
+ .......+ ..+....+..+ ..+|+|||++.++.... ...+.++|.+ +.++ +..-.+
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~-vrmLIIDE~H~lLaGs~-----~~qr~~Ln~L-K~L~NeL~ipi 183 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG-VRMLIIDEFHNLLAGSY-----RKQREFLNAL-KFLGNELQIPI 183 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC-CcEEEeechHHHhcccH-----HHHHHHHHHH-HHHhhccCCCe
Confidence 1 11111122 22233344444 67999999999865432 2344455544 4443 344455
Q ss_pred EEEEEeCC--CCCCCHHHhcccceeEecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHH
Q 006458 503 VLALATNR--PGDLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 579 (644)
Q Consensus 503 iiI~ttN~--~~~ld~al~~Rfd~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 579 (644)
+.|+|-.- .-.-|+.+.+|| ..+.+|.... ++...+|..+-..+.... .....+.+.
T Consensus 184 V~vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-------------------~S~l~~~~l 243 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPLRK-------------------PSNLASPEL 243 (302)
T ss_pred EEeccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCCCC-------------------CCCCCCHHH
Confidence 55555322 224578999999 6677776654 455566665554443221 111234566
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 580 LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 580 l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
...|-..|+|..| +|.+|+..+-..+..++...||.+.++.+
T Consensus 244 a~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 244 ARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 7889999999665 68888865544455566789999888763
No 191
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.27 E-value=1.3e-10 Score=123.93 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=126.5
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--chhHH
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GPQAV 444 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~~~~ 444 (644)
++++||.......+...+...... +. +|||+|++||||+++|++|.... +.||+.++|..+... .....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~---~~---pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL---DK---PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC---CC---CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 788999888777776655544322 22 39999999999999999997765 468999999987421 00000
Q ss_pred HH-----------HHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEE
Q 006458 445 TK-----------IHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLA 505 (644)
Q Consensus 445 ~~-----------l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI 505 (644)
+. ....+. ...++.|||||+|.| +...+..|..++..-. ....++.||
T Consensus 79 g~~~~~~~g~~~~~~g~l~----~a~gGtL~l~~i~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 145 (326)
T PRK11608 79 GHEAGAFTGAQKRHPGRFE----RADGGTLFLDELATA---------PMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (326)
T ss_pred cccccccCCcccccCCchh----ccCCCeEEeCChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 00 011121 123678999999997 4455555655654321 112368899
Q ss_pred EEeCCC-------CCCCHHHhccc-ceeEecCCCCH--HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhh-ccC
Q 006458 506 LATNRP-------GDLDSAVADRI-DEVLEFPLPGQ--EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE-IKG 574 (644)
Q Consensus 506 ~ttN~~-------~~ld~al~~Rf-d~~i~~~~p~~--~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 574 (644)
+||+.. ..+.+.|..|| ...|.+|+... +++..|+..|+..+.... +.. +..
T Consensus 146 ~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-----------------~~~~~~~ 208 (326)
T PRK11608 146 CATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL-----------------GLPLFPG 208 (326)
T ss_pred EeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHh-----------------CCCCCCC
Confidence 988763 46788899999 33455555432 445566666666543211 111 124
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMAS 601 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~ 601 (644)
++++.+..|..+..--+.++|.+++..
T Consensus 209 ~s~~al~~L~~y~WPGNvrEL~~vl~~ 235 (326)
T PRK11608 209 FTERARETLLNYRWPGNIRELKNVVER 235 (326)
T ss_pred CCHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 899999999999776677888888853
No 192
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.27 E-value=1e-10 Score=133.57 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=135.5
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeCCCCCC--CchhHHH-HHH-HHHHH---HHhcCCCeEEEEeccch
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAP--LGPQAVT-KIH-QLFDW---AKKSKRGLLLFIDEADA 470 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~~~l~~--~g~~~~~-~l~-~~f~~---a~~~~~~~VL~IDEid~ 470 (644)
.++|||.|+||||||+++++|+..++. +|+.+..+.... +|+-... .+. ..+.+ ......+++|||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 568999999999999999999998864 588776432211 1211000 000 00000 00012246999999999
Q ss_pred hhhccccCcCCHHHHHHHHHHHHHh-------C---CCCCCEEEEEEeCCCC---CCCHHHhcccceeEecCC-CCHHHH
Q 006458 471 FLCERNKTYMSEAQRSALNALLFRT-------G---DQSKDIVLALATNRPG---DLDSAVADRIDEVLEFPL-PGQEER 536 (644)
Q Consensus 471 l~~~r~~~~~~~~~~~~l~~lL~~~-------~---~~~~~viiI~ttN~~~---~ld~al~~Rfd~~i~~~~-p~~~er 536 (644)
+ +...+..|..++..- + ..+.++.||+|+|..+ .|.+.+++||+.+|.+.. |+.++|
T Consensus 96 l---------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 96 L---------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred C---------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHH
Confidence 7 334444554444321 0 1235789999999765 799999999999887754 577889
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCc-HHHHHHHHHHHHHHHhCCCCCc
Q 006458 537 FKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFS-GREIAKLMASVQAAVYGSENCV 613 (644)
Q Consensus 537 ~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t--~G~S-grdI~~L~~~~~aa~~~~~~~~ 613 (644)
..|++.++......... ........+......+.--.++++.+..|+..+ -|.+ .|.-..++..+++.+.-.+...
T Consensus 167 ~eil~~~~~~~~~~~~~-~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~ 245 (589)
T TIGR02031 167 VEIVRRERCNEVFRMND-ELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTE 245 (589)
T ss_pred HHHHHHHHHhhhhhcch-hhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCC
Confidence 99999887432111000 000000111111111222247888777777664 3444 5666667777777777677799
Q ss_pred cCHHHHHHHHHHHHHhH
Q 006458 614 LDPSLFREVVDYKVAEH 630 (644)
Q Consensus 614 lt~~~~~~al~~~~~~~ 630 (644)
++.+|+..++.......
T Consensus 246 V~~~Dv~~a~~lvl~hR 262 (589)
T TIGR02031 246 VTEEDLKLAVELVLLPR 262 (589)
T ss_pred CCHHHHHHHHHHHhhhh
Confidence 99999999999887643
No 193
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=1.1e-10 Score=129.89 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=114.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCeEEEEeccchhhhcccc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNK 477 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~ 477 (644)
+-+||+||||-||||||+.+|++.|..++.||.++-.... ...+.+......-... .+|..|+|||||--
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~-~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------ 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP-MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------ 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH-HHHHHHHHHHhhccccccCCCcceEEEecccCC------
Confidence 4689999999999999999999999999999998864321 1222333332222222 45788999999962
Q ss_pred CcCCHHHHHHHHHHHHHh-----CCCCC-------------CEEEEEEeCCCCCCCHHHhc--ccceeEecCCCCHHHHH
Q 006458 478 TYMSEAQRSALNALLFRT-----GDQSK-------------DIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERF 537 (644)
Q Consensus 478 ~~~~~~~~~~l~~lL~~~-----~~~~~-------------~viiI~ttN~~~~ld~al~~--Rfd~~i~~~~p~~~er~ 537 (644)
....-.++..++... +.... .-.||+.||.. ..|+|+. -|-.+|+|.+|...-..
T Consensus 400 ---~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 400 ---PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred ---cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHH
Confidence 112233333333321 11110 13478888875 4566664 57799999999999888
Q ss_pred HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 006458 538 KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 607 (644)
Q Consensus 538 ~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~ 607 (644)
+-|+..|...... ++...|..|+..|++ ||+.-++.+|-.+.
T Consensus 475 ~RL~~IC~rE~mr------------------------~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 475 ERLNEICHRENMR------------------------ADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred HHHHHHHhhhcCC------------------------CCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 8888887764332 566789999988866 99998888876654
No 194
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.26 E-value=4.7e-10 Score=128.39 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=92.6
Q ss_pred eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC------------------CCCCCEEEEEEeCCC--CCCCHHHhc
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------------------DQSKDIVLALATNRP--GDLDSAVAD 520 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~------------------~~~~~viiI~ttN~~--~~ld~al~~ 520 (644)
++|||||++.| +...+..|..+|+.-. ..+.++.+|+++|.. ..+++.|++
T Consensus 219 GtL~Ldei~~L---------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~ 289 (608)
T TIGR00764 219 GVLYIDEIKTM---------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRS 289 (608)
T ss_pred CEEEEEChHhC---------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHH
Confidence 57778888776 3344445555554311 013478899999864 679999999
Q ss_pred ccc---eeEecCC--C-CHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC------
Q 006458 521 RID---EVLEFPL--P-GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE------ 588 (644)
Q Consensus 521 Rfd---~~i~~~~--p-~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~------ 588 (644)
||+ ..+.|+. | +.+.+..+++......... + ..+.++++.+..|.+.+.
T Consensus 290 rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~-G------------------~l~~~s~~Av~~Li~~~~R~ag~r 350 (608)
T TIGR00764 290 RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKD-G------------------RIPHFTRDAVEEIVREAQRRAGRK 350 (608)
T ss_pred HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHh-C------------------CCCcCCHHHHHHHHHHHHHHHhcc
Confidence 998 6666643 3 4566666655433332111 0 112478887777764321
Q ss_pred ---CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHHH
Q 006458 589 ---GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQ 632 (644)
Q Consensus 589 ---G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~ 632 (644)
..+.|+|..+++.+...+...+...|+.+|+.+|++.....+.+
T Consensus 351 ~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~~~ 397 (608)
T TIGR00764 351 DHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLEKQ 397 (608)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHHHH
Confidence 23569999999877655555566899999999999988765543
No 195
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.4e-11 Score=134.56 Aligned_cols=171 Identities=20% Similarity=0.252 Sum_probs=130.5
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCC
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDV 436 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l 436 (644)
...++-|||.++-..++-+++... ..+|-+|+|+||+|||.++..||... +..++.++.+.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR--------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRR--------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhcc--------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 345899999888777776654222 12346999999999999999999886 455777777666
Q ss_pred CC---CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-
Q 006458 437 AP---LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG- 512 (644)
Q Consensus 437 ~~---~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~- 512 (644)
.. +-++.+..++.+++...... +.||||||+|.+.+.....+..-+..+.|...| ..+.+.+|++|+..+
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-----ARGeL~~IGATT~~EY 311 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-----ARGELRCIGATTLDEY 311 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH-----hcCCeEEEEeccHHHH
Confidence 33 77788999999999999887 899999999999876654331122334444444 566788999887533
Q ss_pred ----CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhC
Q 006458 513 ----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAG 552 (644)
Q Consensus 513 ----~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~ 552 (644)
.-|++|-+|| ..|.+.-|+.++-..||+-.-.+|....+
T Consensus 312 Rk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 312 RKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred HHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 4589999999 99999999999999999999888876543
No 196
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.25 E-value=7.5e-11 Score=132.48 Aligned_cols=214 Identities=19% Similarity=0.235 Sum_probs=131.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--ch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~ 441 (644)
...|++++|.......+...+....... .+|||+|++||||+++|++|.... +.||+.++|+.+... ..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSD------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCC------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHH
Confidence 3679999999888877766554443322 249999999999999999998765 579999999887431 00
Q ss_pred hHHHH------------HHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCC
Q 006458 442 QAVTK------------IHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKD 501 (644)
Q Consensus 442 ~~~~~------------l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~ 501 (644)
...+. -..+|..+ .++.||||||+.| +...+..|..+|+.-. . ...+
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e~A----~gGTLfLdeI~~L---------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIEAA----HRGTLFLDEIGEM---------PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred HhcCCcccccccccccccccchhhc----CCceEEecChHhC---------CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 00000 01122222 2578999999997 4456666666665421 1 1235
Q ss_pred EEEEEEeCCC-------CCCCHHHhcccceeEecCCCCHH----HHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhh
Q 006458 502 IVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQE----ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 570 (644)
Q Consensus 502 viiI~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~----er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (644)
+.||++||.. ..|...|..|+ ..+.+..|+.. ++..|+..|+.++....
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~------------------- 408 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAAL------------------- 408 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHc-------------------
Confidence 6899988763 24566677777 33444455444 45556666666543210
Q ss_pred hccCCCHHHHHH-------HHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 006458 571 EIKGLTDDILME-------AAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 620 (644)
Q Consensus 571 ~~~~~~d~~l~~-------LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~ 620 (644)
.+ .++++.+.. |..+..-.+.++|.+++..+-.......+..|+.+++.
T Consensus 409 ~~-~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 409 RL-PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred CC-CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 11 156666665 77776666778888888533322211233567777654
No 197
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.25 E-value=1.6e-10 Score=130.65 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=127.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL- 439 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~- 439 (644)
.....+|+++||.......+...+...+. ...| |||+|++||||+++|+++.... +.||+.++|..+...
T Consensus 197 ~~~~~~f~~~ig~s~~~~~~~~~~~~~A~---~~~p---vlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~ 270 (520)
T PRK10820 197 VNDDSAFSQIVAVSPKMRQVVEQARKLAM---LDAP---LLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDV 270 (520)
T ss_pred ccccccccceeECCHHHHHHHHHHHHHhC---CCCC---EEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHH
Confidence 34667899999988776666554433322 2233 9999999999999999986664 478999999887531
Q ss_pred ------chhH------HHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh-----C---CCC
Q 006458 440 ------GPQA------VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-----G---DQS 499 (644)
Q Consensus 440 ------g~~~------~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~-----~---~~~ 499 (644)
|... ......+|..+ .++.||||||+.| +...+..|..+++.- + ...
T Consensus 271 ~e~elFG~~~~~~~~~~~~~~g~~e~a----~~GtL~LdeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 337 (520)
T PRK10820 271 VESELFGHAPGAYPNALEGKKGFFEQA----NGGSVLLDEIGEM---------SPRMQAKLLRFLNDGTFRRVGEDHEVH 337 (520)
T ss_pred HHHHhcCCCCCCcCCcccCCCChhhhc----CCCEEEEeChhhC---------CHHHHHHHHHHHhcCCcccCCCCccee
Confidence 1000 00001123222 2678999999997 445666666666542 1 123
Q ss_pred CCEEEEEEeCCC-------CCCCHHHhcccceeEecCCCCHHHH----HHHHHHHHHHHhhhhCCCCCCcchhhhhhhhh
Q 006458 500 KDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEER----FKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQ 568 (644)
Q Consensus 500 ~~viiI~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er----~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 568 (644)
.++.||+||+.+ ..+.+.|..|+ .++.+..|...+| ..++..++.++....
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~----------------- 399 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQ----------------- 399 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHc-----------------
Confidence 467899988753 35778888887 3455555555444 455666666543221
Q ss_pred hhhccCCCHHHHHHHHHHcCCCcHHHHHHHHH
Q 006458 569 KIEIKGLTDDILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 569 ~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
+.....++++.+..|..+...-+.++|.+++.
T Consensus 400 g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~ 431 (520)
T PRK10820 400 GVPRPKLAADLNTVLTRYGWPGNVRQLKNAIY 431 (520)
T ss_pred CCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 11122489999999998866556777777764
No 198
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=6.7e-11 Score=125.82 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=98.4
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcCCC-------------------------eEEEeCCCCC---------------
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSGLD-------------------------YALMTGGDVA--------------- 437 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~~~-------------------------~~~i~~~~l~--------------- 437 (644)
..+..+||+||+|+||+++|+.+|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 444679999999999999999999887432 1222111000
Q ss_pred -CC--------chhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEE
Q 006458 438 -PL--------GPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLA 505 (644)
Q Consensus 438 -~~--------g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI 505 (644)
.. ..-.+..++.+...+.. ..+..|+|||++|.| .....|.||+.+++.+.+++||
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~fi 166 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL------------NVAAANALLKTLEEPPPGTVFL 166 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc------------CHHHHHHHHHHhcCCCcCcEEE
Confidence 00 01123455555555432 234579999999997 3567899999999999999999
Q ss_pred EEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHH
Q 006458 506 LATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKL 542 (644)
Q Consensus 506 ~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~ 542 (644)
++|+.++.+.|.++||| ..+.|++|+.++....|..
T Consensus 167 L~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 167 LVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 99999999999999999 8999999999998888765
No 199
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.24 E-value=3.4e-12 Score=125.20 Aligned_cols=142 Identities=28% Similarity=0.382 Sum_probs=63.0
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC----------CeEEEeC------
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------DYALMTG------ 433 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~----------~~~~i~~------ 433 (644)
|.+|+|++.++..+.-.+.. ..|+||+||||||||++|+.+...+.. .++.+.+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~ 71 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEG 71 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---E
T ss_pred hhhhcCcHHHHHHHHHHHcC----------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCc
Confidence 89999999999998543321 147999999999999999999987621 0111111
Q ss_pred ----CCCCCCchhHHHHHHHHHHHHH-------hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----
Q 006458 434 ----GDVAPLGPQAVTKIHQLFDWAK-------KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----- 497 (644)
Q Consensus 434 ----~~l~~~g~~~~~~l~~~f~~a~-------~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----- 497 (644)
-.+... ..+.+ ...++--.. ...-.+||||||+-.| ...+++.|++-+++
T Consensus 72 ~~~~~Pfr~p-hhs~s-~~~liGgg~~~~PGeislAh~GVLflDE~~ef------------~~~vld~Lr~ple~g~v~i 137 (206)
T PF01078_consen 72 LIRQRPFRAP-HHSAS-EAALIGGGRPPRPGEISLAHRGVLFLDELNEF------------DRSVLDALRQPLEDGEVTI 137 (206)
T ss_dssp EEE---EEEE--TT---HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-------------HHHHHHHHHHHHHSBEEE
T ss_pred eecCCCcccC-CCCcC-HHHHhCCCcCCCcCHHHHhcCCEEEechhhhc------------CHHHHHHHHHHHHCCeEEE
Confidence 000000 00000 000110000 0111469999999886 34466666665432
Q ss_pred --------CCCCEEEEEEeCC-----------------------CCCCCHHHhcccceeEecCCCCHHH
Q 006458 498 --------QSKDIVLALATNR-----------------------PGDLDSAVADRIDEVLEFPLPGQEE 535 (644)
Q Consensus 498 --------~~~~viiI~ttN~-----------------------~~~ld~al~~Rfd~~i~~~~p~~~e 535 (644)
.+.++++|+|+|. ...+..+|++|||..+.++..+.++
T Consensus 138 ~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 138 SRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp EETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred EECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 4568999999984 2257789999999999998877653
No 200
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=1.4e-10 Score=124.50 Aligned_cols=204 Identities=19% Similarity=0.187 Sum_probs=129.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCCCchh
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPLGPQ 442 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~~g~~ 442 (644)
...++++||.......+..-+.. ....+. +||++|++||||+.+|+.|.... +.||+.+||+.+....-+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~---~ap~~~---~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA---YAPSGL---PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh---hCCCCC---cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH
Confidence 34589999976665555443333 222333 49999999999999999996443 679999999998653222
Q ss_pred H--HHHH-----------HHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH-----hCC---CCCC
Q 006458 443 A--VTKI-----------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-----TGD---QSKD 501 (644)
Q Consensus 443 ~--~~~l-----------~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~-----~~~---~~~~ 501 (644)
. .+.. ..+|.+|. ++.||||||..| ....+..+-.+++. ++. ...+
T Consensus 148 ~eLFG~~kGaftGa~~~k~Glfe~A~----GGtLfLDEI~~L---------P~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTGAQGGKAGLFEQAN----GGTLFLDEIHRL---------PPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHhccccceeecccCCcCchheecC----CCEEehhhhhhC---------CHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 1 1111 22333332 679999999997 44556666666665 332 4568
Q ss_pred EEEEEEeCC--CCCCCH--HHhc-ccceeEecCCCCH--HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 502 IVLALATNR--PGDLDS--AVAD-RIDEVLEFPLPGQ--EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 502 viiI~ttN~--~~~ld~--al~~-Rfd~~i~~~~p~~--~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
|.+|++||. .+.+-. .|.+ |+..+|.+|+... .++..++++++..+..+. ++.+..
T Consensus 215 VRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l-----------------~~~~~~ 277 (403)
T COG1221 215 VRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRL-----------------GLPLSV 277 (403)
T ss_pred ceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHc-----------------CCCCCC
Confidence 999998875 233333 5555 5556666665543 455567777776665432 222233
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMASVQAAV 606 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~ 606 (644)
.+++.+..|-.+..--+.|++.+++..+-+..
T Consensus 278 ~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 278 DSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 45677888877764447789999886444444
No 201
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.23 E-value=4.6e-10 Score=126.73 Aligned_cols=198 Identities=20% Similarity=0.278 Sum_probs=129.7
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--chhH
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GPQA 443 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~~~ 443 (644)
.+.++||.......+...+....... .+|||+|++|||||++|++|.... +.+|+.++|..+... ....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~------~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASD------LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCC------CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 57889999888877766555543332 249999999999999999998875 479999999887531 0000
Q ss_pred HHHH-----------HHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEE
Q 006458 444 VTKI-----------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVL 504 (644)
Q Consensus 444 ~~~l-----------~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~vii 504 (644)
.+.. ...|.. ..++.|||||||.| +...+..|..+++.-. ....++.|
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~----a~gGtL~ldeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 325 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFEL----ADGGTLFLDEIGEL---------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVRV 325 (509)
T ss_pred cCccccccCCCcccCCcchhh----cCCCEEEecChhhC---------CHHHHHHHHHHHhcCCEeeCCCCcceecceEE
Confidence 0000 011222 22678999999998 3455555555554321 12247899
Q ss_pred EEEeCCC-------CCCCHHHhcccceeEecCCCCHHHH----HHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhcc
Q 006458 505 ALATNRP-------GDLDSAVADRIDEVLEFPLPGQEER----FKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573 (644)
Q Consensus 505 I~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er----~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (644)
|++||.. ..|...|..|+ .++.+..|+..+| ..|+++++.++....+ ....
T Consensus 326 I~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~-----------------~~~~ 387 (509)
T PRK05022 326 IAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLG-----------------LRSL 387 (509)
T ss_pred EEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcC-----------------CCCC
Confidence 9998863 45788888888 4455555555444 4555666655432211 1112
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 006458 574 GLTDDILMEAAAKTEGFSGREIAKLMASVQ 603 (644)
Q Consensus 574 ~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~ 603 (644)
.++++.+..|..+..-.+.++|.+++..+-
T Consensus 388 ~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~ 417 (509)
T PRK05022 388 RLSPAAQAALLAYDWPGNVRELEHVISRAA 417 (509)
T ss_pred CCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 489999999999987778899999886443
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.2e-10 Score=120.75 Aligned_cols=130 Identities=21% Similarity=0.205 Sum_probs=98.1
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCC-----------------------CeEEEeCCCC-CCCchhHHHHHHHHHH
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGL-----------------------DYALMTGGDV-APLGPQAVTKIHQLFD 452 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~-----------------------~~~~i~~~~l-~~~g~~~~~~l~~~f~ 452 (644)
+..+..+||+||.|+||+++|+.+|+.+.+ +++.+....- ..++ +..++.+..
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~---vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT---VEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC---HHHHHHHHH
Confidence 344457999999999999999999988632 2333322110 1122 334444444
Q ss_pred HHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecC
Q 006458 453 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 529 (644)
Q Consensus 453 ~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~ 529 (644)
.+.. ...+.|++||++|.| .....|.||+.+++.+.+++||++|+.++.+.|.++||| ..+.|+
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~ 165 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM------------NESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVT 165 (319)
T ss_pred HHhhCcccCCceEEEecchhhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCC
Confidence 4432 234679999999997 356899999999999999999999999999999999999 899999
Q ss_pred CCCHHHHHHHHHH
Q 006458 530 LPGQEERFKLLKL 542 (644)
Q Consensus 530 ~p~~~er~~Il~~ 542 (644)
+|+.++....|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999988877764
No 203
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.21 E-value=5.3e-10 Score=130.71 Aligned_cols=199 Identities=21% Similarity=0.250 Sum_probs=129.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--ch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~ 441 (644)
...|+++||.......+...+...... . .+|||+|++|||||++|++|.... +.+|+.++|..+... ..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~---~---~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS---D---STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC---C---CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhh
Confidence 356899999988887776544443322 2 249999999999999999998865 579999999876421 00
Q ss_pred hHH-----------HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCE
Q 006458 442 QAV-----------TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDI 502 (644)
Q Consensus 442 ~~~-----------~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~v 502 (644)
... ......|..+ .+++||||||+.| +...+..|..+++.-. ....++
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le~a----~~GtL~Ldei~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFELA----DKSSLFLDEVGDM---------PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchhhHHHhc----CCCeEEEechhhC---------CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 000 0011122222 2679999999997 4455656666664421 123578
Q ss_pred EEEEEeCCC-------CCCCHHHhcccceeEecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhh
Q 006458 503 VLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 571 (644)
Q Consensus 503 iiI~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (644)
.||++|+.. ..|...+..|+ ..+.+..|+..+|.. |++.++.++.... +..
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-----------------~~~ 574 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-----------------GRN 574 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc-----------------CCC
Confidence 899998763 35666777777 455666666655544 5666665543211 111
Q ss_pred ccCCCHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 006458 572 IKGLTDDILMEAAAKTEGFSGREIAKLMASV 602 (644)
Q Consensus 572 ~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~ 602 (644)
+..++++.+..|..+..-.+.++|.+++..+
T Consensus 575 ~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a 605 (686)
T PRK15429 575 IDSIPAETLRTLSNMEWPGNVRELENVIERA 605 (686)
T ss_pred CCCcCHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 2248999999999887766788888888533
No 204
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.20 E-value=5.1e-10 Score=129.97 Aligned_cols=214 Identities=16% Similarity=0.181 Sum_probs=134.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhH
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA 443 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~ 443 (644)
..+|++++|.......+...+...... .. +|||+|++||||+++|++|.+.. +.||+.++|..+..-. .
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~---~~---pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~--~ 392 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS---SF---PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA--L 392 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc---CC---CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH--H
Confidence 446999999887777665544443322 22 39999999999999999998876 4799999998875310 0
Q ss_pred HHHHHHHHHHH-----------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCCEEE
Q 006458 444 VTKIHQLFDWA-----------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVL 504 (644)
Q Consensus 444 ~~~l~~~f~~a-----------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~vii 504 (644)
. .++|... .....++.||||||+.| +...+..|..+|+.-. . ...++.|
T Consensus 393 ~---~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ri 460 (638)
T PRK11388 393 A---EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL---------SPELQSALLQVLKTGVITRLDSRRLIPVDVRV 460 (638)
T ss_pred H---HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEE
Confidence 0 0111100 00123678999999997 4455555655554311 0 1126889
Q ss_pred EEEeCCC-------CCCCHHHhcccceeEecCCCCHHHHH----HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhcc
Q 006458 505 ALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERF----KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 573 (644)
Q Consensus 505 I~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er~----~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (644)
|+|||.. ..|.+.|.-|+ ..+.+..|...+|. .|++.++.++....+ ..+
T Consensus 461 I~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~-----------------~~~- 521 (638)
T PRK11388 461 IATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFS-----------------TRL- 521 (638)
T ss_pred EEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhC-----------------CCC-
Confidence 9988863 45667777777 55666666665554 456666655422110 011
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 574 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 574 ~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
.++++.+..|..+...-+.++|.+++..+-. ..++..|+.+++-..
T Consensus 522 ~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~---~~~~~~i~~~~lp~~ 567 (638)
T PRK11388 522 KIDDDALARLVSYRWPGNDFELRSVIENLAL---SSDNGRIRLSDLPEH 567 (638)
T ss_pred CcCHHHHHHHHcCCCCChHHHHHHHHHHHHH---hCCCCeecHHHCchh
Confidence 3899999999998766677888887753322 233456666665443
No 205
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.5e-10 Score=127.42 Aligned_cols=204 Identities=27% Similarity=0.398 Sum_probs=155.5
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC-CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 475 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~-~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r 475 (644)
..|+.+++++||||||||++++.++.. +..+..+++.... .+.+.....+..+|.++.... ++++++|++|.+.+.+
T Consensus 15 ~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~ii~~d~~~~~~~~~ 92 (494)
T COG0464 15 IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLA-PSIIFIDEIDALAPKR 92 (494)
T ss_pred CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC-CCeEeechhhhcccCc
Confidence 457789999999999999999999999 6555556665544 366777889999999999877 4899999999999888
Q ss_pred ccCcCCHHHHHHHHHHHHHhCCC-CCCEEEEEEeCCCCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhC
Q 006458 476 NKTYMSEAQRSALNALLFRTGDQ-SKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAG 552 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~~~~-~~~viiI~ttN~~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~ 552 (644)
.. ........++..++..++.. ...++++..+|.+..+++++.+ ||+..+.+..|+...+..|+.........
T Consensus 93 ~~-~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~--- 168 (494)
T COG0464 93 SS-DQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFL--- 168 (494)
T ss_pred cc-cccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCC---
Confidence 77 33334555666666554321 2337777799999999999987 99999999999999998888877654321
Q ss_pred CCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHHhC-----CCCCccCHHHHHHHHHHH
Q 006458 553 SRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQ-AAVYG-----SENCVLDPSLFREVVDYK 626 (644)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~-aa~~~-----~~~~~lt~~~~~~al~~~ 626 (644)
..+..+..++..+.||++.++..++.... ..... .....++.+++..+++..
T Consensus 169 ----------------------~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~ 226 (494)
T COG0464 169 ----------------------GPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKV 226 (494)
T ss_pred ----------------------cccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhc
Confidence 12567889999999999999999994332 22222 334667888888888775
Q ss_pred HH
Q 006458 627 VA 628 (644)
Q Consensus 627 ~~ 628 (644)
..
T Consensus 227 ~~ 228 (494)
T COG0464 227 LP 228 (494)
T ss_pred Cc
Confidence 43
No 206
>PRK08116 hypothetical protein; Validated
Probab=99.19 E-value=2.4e-10 Score=118.30 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=91.6
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCch----
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP---- 441 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~---- 441 (644)
+|++++..+.....+........+.........+++|+|+||||||+|+.++++.+ +.++++++..++.....
T Consensus 83 tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~ 162 (268)
T PRK08116 83 TFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYK 162 (268)
T ss_pred chhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 57877755554444433333333322222223469999999999999999999986 77888887655422100
Q ss_pred -hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-----CCC
Q 006458 442 -QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-----DLD 515 (644)
Q Consensus 442 -~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~-----~ld 515 (644)
........++.. .....+|+|||++..- .++.....|..++... ...+..+|+|||.+. .++
T Consensus 163 ~~~~~~~~~~~~~---l~~~dlLviDDlg~e~-------~t~~~~~~l~~iin~r--~~~~~~~IiTsN~~~~eL~~~~~ 230 (268)
T PRK08116 163 SSGKEDENEIIRS---LVNADLLILDDLGAER-------DTEWAREKVYNIIDSR--YRKGLPTIVTTNLSLEELKNQYG 230 (268)
T ss_pred ccccccHHHHHHH---hcCCCEEEEecccCCC-------CCHHHHHHHHHHHHHH--HHCCCCEEEECCCCHHHHHHHHh
Confidence 000111122222 2336799999996521 1233344444444432 123345778888752 257
Q ss_pred HHHhccc---ceeEecCCCCHHHHHHHHHHHH
Q 006458 516 SAVADRI---DEVLEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 516 ~al~~Rf---d~~i~~~~p~~~er~~Il~~~l 544 (644)
..+.+|+ ...|.|+.++. |..+.+..+
T Consensus 231 ~ri~sRl~e~~~~v~~~g~d~--R~~~~~ek~ 260 (268)
T PRK08116 231 KRIYDRILEMCTPVENEGKSY--RKEIAKEKL 260 (268)
T ss_pred HHHHHHHHHcCEEEEeeCcCh--hHHHHHHHH
Confidence 7888885 34566666664 555555443
No 207
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.7e-10 Score=122.72 Aligned_cols=228 Identities=23% Similarity=0.275 Sum_probs=131.7
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC---------CC-eEEEeCCC--
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------LD-YALMTGGD-- 435 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---------~~-~~~i~~~~-- 435 (644)
..|.||+|++..+..+.-... ...|+||+||||||||++|+.+...+. .. +..+.+..
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA----------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~ 245 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA----------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHE 245 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh----------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccc
Confidence 469999999999999854321 124699999999999999998876551 00 11111100
Q ss_pred ---------CCC----------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 436 ---------VAP----------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 436 ---------l~~----------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
|.. .|+...-.-.. .. ..-++||||||+-.+ .+.+|+.|.+=++
T Consensus 246 ~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGe----Is-LAH~GVLFLDElpef------------~~~iLe~LR~PLE 308 (490)
T COG0606 246 GCPLKIHRPFRAPHHSASLAALVGGGGVPRPGE----IS-LAHNGVLFLDELPEF------------KRSILEALREPLE 308 (490)
T ss_pred cCccceeCCccCCCccchHHHHhCCCCCCCCCc----ee-eecCCEEEeeccchh------------hHHHHHHHhCccc
Confidence 000 11110000000 00 111469999999875 3567888877654
Q ss_pred C-------------CCCCEEEEEEeCCC-----------------------CCCCHHHhcccceeEecCCCCHHHHH---
Q 006458 497 D-------------QSKDIVLALATNRP-----------------------GDLDSAVADRIDEVLEFPLPGQEERF--- 537 (644)
Q Consensus 497 ~-------------~~~~viiI~ttN~~-----------------------~~ld~al~~Rfd~~i~~~~p~~~er~--- 537 (644)
+ .+.+|.+|+++|.. ..+...|++|||..+.++.++..++.
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~ 388 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQV 388 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCC
Confidence 3 34578889999852 24567999999999999998744332
Q ss_pred -----------HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhc-cCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 006458 538 -----------KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI-KGLTDDILMEAAAKTEGFSGREIAKLMASVQAA 605 (644)
Q Consensus 538 -----------~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa 605 (644)
+++..+-.++......... ..+-...-.++.. ...+.+.+.....+ -++|.|...+++.-....
T Consensus 389 ~~~ess~~v~~rVa~AR~~Q~~R~~~~~~N---a~l~~~~l~k~~~L~~~~~~~L~~al~~-~~lS~R~~~rILKvarTi 464 (490)
T COG0606 389 PTGESSAGVRERVAKAREAQIARAGRIGIN---AELSEEALRKFCALQREDADLLKAALER-LGLSARAYHRILKVARTI 464 (490)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhccCcc---hhcCHHHHHHhcccCHhHHHHHHHHHHh-cchhHHHHHHHHHHHhhh
Confidence 2333222111111100000 0000111111111 11222333433333 489999999999766666
Q ss_pred HhCCCCCccCHHHHHHHHHHH
Q 006458 606 VYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 606 ~~~~~~~~lt~~~~~~al~~~ 626 (644)
+.-.+...|...++.+++.+.
T Consensus 465 ADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 465 ADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred hcccCcchhhHHHHHHHHhhh
Confidence 666667889999999999886
No 208
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=1.9e-10 Score=124.94 Aligned_cols=139 Identities=18% Similarity=0.252 Sum_probs=83.9
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC-----eEEEeCC------CC--
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD-----YALMTGG------DV-- 436 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~-----~~~i~~~------~l-- 436 (644)
++++++.+...+.+...+.. .++++|+||||||||++|+.+|..++.. +..+..+ ++
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 56666666666555333221 2579999999999999999999987531 1111111 11
Q ss_pred ----CCCchhHH-HHHHHHHHHHHhc-CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------------
Q 006458 437 ----APLGPQAV-TKIHQLFDWAKKS-KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-------------- 496 (644)
Q Consensus 437 ----~~~g~~~~-~~l~~~f~~a~~~-~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-------------- 496 (644)
...|.... +.+..++..|... ..++||||||++..-. ..++..++..++
T Consensus 244 G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 244 GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------HHhhhhhhhhccccccccccceeeec
Confidence 11111111 1233444555543 2578999999998421 112222222111
Q ss_pred --------CCCCCEEEEEEeCCCC----CCCHHHhcccceeEecCC
Q 006458 497 --------DQSKDIVLALATNRPG----DLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 497 --------~~~~~viiI~ttN~~~----~ld~al~~Rfd~~i~~~~ 530 (644)
..+.|+.||+|+|..+ .+|.+|+||| ..|++.+
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 2356899999999876 7999999999 6777765
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.18 E-value=2e-10 Score=104.43 Aligned_cols=122 Identities=26% Similarity=0.338 Sum_probs=80.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC---eEEEeCCCCCC---------------CchhHHHHHHHHHHHHHhcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAP---------------LGPQAVTKIHQLFDWAKKSKRGLL 462 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~---~~~i~~~~l~~---------------~g~~~~~~l~~~f~~a~~~~~~~V 462 (644)
.+++|+||||||||++++.++..++.. ++.+++..... ...........++..+.... +.|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK-PDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC-CCE
Confidence 579999999999999999999999765 77777665322 11233445666777777655 689
Q ss_pred EEEeccchhhhccccCcCCHHHHHHHHH----HHHHhCCCCCCEEEEEEeCC-CCCCCHHHhcccceeEecCCC
Q 006458 463 LFIDEADAFLCERNKTYMSEAQRSALNA----LLFRTGDQSKDIVLALATNR-PGDLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 463 L~IDEid~l~~~r~~~~~~~~~~~~l~~----lL~~~~~~~~~viiI~ttN~-~~~ld~al~~Rfd~~i~~~~p 531 (644)
|||||++.+...... ..... ..........++.+|+++|. ....+..+..|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE--------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH--------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999997543211 11100 00111224566788888886 344455566688888887654
No 210
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-10 Score=121.38 Aligned_cols=201 Identities=22% Similarity=0.295 Sum_probs=142.1
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--Cch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--LGP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--~g~ 441 (644)
...+.+|||.......+...+.-.+.... +|||+|.+||||..+|++|-+.. ..||+.+||+.+.. ..+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlES 292 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLES 292 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHH
Confidence 45788999999888888776666654443 49999999999999999998887 58999999999865 334
Q ss_pred hHHHHHHHHHHHHHhcCC-------CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCCEEEEE
Q 006458 442 QAVTKIHQLFDWAKKSKR-------GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLAL 506 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~-------~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~viiI~ 506 (644)
+.++..+..|+-|...++ ++-||||||..| +-..+..|...|+.-+ . ..-+|.||+
T Consensus 293 ELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIA 363 (550)
T COG3604 293 ELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIA 363 (550)
T ss_pred HHhcccccccccchhccCcceeecCCCeEechhhccC---------CHHHHHHHHHHHhhcceeecCCCceeEEEEEEEe
Confidence 445555666766665443 467999999987 4466777777777532 1 234799999
Q ss_pred EeCCC-------CCCCHHHhcccceeEecCCCCHHHHH----HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCC
Q 006458 507 ATNRP-------GDLDSAVADRIDEVLEFPLPGQEERF----KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 575 (644)
Q Consensus 507 ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er~----~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (644)
+||+- ..|-..+.-|+ .++.+..|...+|. -+..+|+.+.....+ ...-.+
T Consensus 364 ATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~g-----------------r~~l~l 425 (550)
T COG3604 364 ATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLG-----------------RAILSL 425 (550)
T ss_pred ccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcC-----------------Cccccc
Confidence 99972 34444555577 66667777665554 455555555443321 111238
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHH
Q 006458 576 TDDILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 576 ~d~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
+.+.++.|..+..--+.|++++++.
T Consensus 426 s~~Al~~L~~y~wPGNVRELen~ve 450 (550)
T COG3604 426 SAEALELLSSYEWPGNVRELENVVE 450 (550)
T ss_pred CHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 8999999998876557799999994
No 211
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.16 E-value=5.7e-10 Score=124.11 Aligned_cols=231 Identities=22% Similarity=0.206 Sum_probs=130.6
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------eEEEeCC----
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD----------YALMTGG---- 434 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~----------~~~i~~~---- 434 (644)
.|.+++|+..++..+...+ . ...+++|+||||||||++++.|+..+... ++.+.+.
T Consensus 189 d~~~v~Gq~~~~~al~laa-------~---~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA-------A---GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQ 258 (506)
T ss_pred CeEEEECcHHHHhhhheec-------c---CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcccccc
Confidence 5788888877666552211 1 22469999999999999999998765211 1111111
Q ss_pred ------CCCC----------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--
Q 006458 435 ------DVAP----------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-- 496 (644)
Q Consensus 435 ------~l~~----------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-- 496 (644)
.+.. +|++.. .-...+..| .+++|||||++.+ .......|...+..-.
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GGg~~-~~pG~l~~A----~gGvLfLDEi~e~---------~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGGGAI-PGPGEISLA----HNGVLFLDELPEF---------ERRTLDALREPIESGQIH 324 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCCCce-ehhhHhhhc----cCCEEecCCchhC---------CHHHHHHHHHHHHcCcEE
Confidence 0000 111110 001122222 2679999999886 3344444444442211
Q ss_pred --------CCCCCEEEEEEeCCCC---------------------CCCHHHhcccceeEecCCCCHHHHH----------
Q 006458 497 --------DQSKDIVLALATNRPG---------------------DLDSAVADRIDEVLEFPLPGQEERF---------- 537 (644)
Q Consensus 497 --------~~~~~viiI~ttN~~~---------------------~ld~al~~Rfd~~i~~~~p~~~er~---------- 537 (644)
..+.++.+|+|+|... .++.++++|||..+.++.|+.++..
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~ 404 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSA 404 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChH
Confidence 1356799999999742 4788999999999999998654321
Q ss_pred HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHhCCCCCccC
Q 006458 538 KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAA--AKTEGFSGREIAKLMASVQAAVYGSENCVLD 615 (644)
Q Consensus 538 ~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA--~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt 615 (644)
.|.+....-...+....+ ..-..+....-. .+..++++....+. ...-|+|.|...+++..+.+.+.-.+...++
T Consensus 405 ~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~--~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~ 481 (506)
T PRK09862 405 TVKQRVMAARERQFKRQN-KLNAWLDSPEIR--QFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIIT 481 (506)
T ss_pred HHHHHHhhHHHHHHHHHH-HHhcccCHHHHH--HHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 121111110000000000 000000000000 11124554444332 2334899999999999888888878889999
Q ss_pred HHHHHHHHHHH
Q 006458 616 PSLFREVVDYK 626 (644)
Q Consensus 616 ~~~~~~al~~~ 626 (644)
.+|+.+|+.+.
T Consensus 482 ~~hv~eAl~yR 492 (506)
T PRK09862 482 RQHLQEAVSYR 492 (506)
T ss_pred HHHHHHHHHhh
Confidence 99999999987
No 212
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.14 E-value=2.1e-09 Score=124.93 Aligned_cols=219 Identities=15% Similarity=0.120 Sum_probs=130.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHH--HH-----HHhcCCCeEEEEeccchhhhc
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLF--DW-----AKKSKRGLLLFIDEADAFLCE 474 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f--~~-----a~~~~~~~VL~IDEid~l~~~ 474 (644)
||||+|+||||||.+++.+++...... +.++..+...+-.......... .| +.....+++++|||+++|
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~-ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm--- 569 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSI-YTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC--- 569 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccc-cCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC---
Confidence 799999999999999999998654322 1222221111100000000000 00 111223579999999997
Q ss_pred cccCcCCHHHHHHHHHHHHHh----C------CCCCCEEEEEEeCCCC-------------CCCHHHhcccceeE-ecCC
Q 006458 475 RNKTYMSEAQRSALNALLFRT----G------DQSKDIVLALATNRPG-------------DLDSAVADRIDEVL-EFPL 530 (644)
Q Consensus 475 r~~~~~~~~~~~~l~~lL~~~----~------~~~~~viiI~ttN~~~-------------~ld~al~~Rfd~~i-~~~~ 530 (644)
+...+..|..++..- . ....++.||+|+|... .|++++++|||.++ .++.
T Consensus 570 ------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~ 643 (915)
T PTZ00111 570 ------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDH 643 (915)
T ss_pred ------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCC
Confidence 445555555555321 1 1346799999999742 57899999998876 5577
Q ss_pred CCHHHHHHHHHHHHHHHhhhh----CC----------------------CCCCcchhhhhhhhh---hhhccCCCHHHHH
Q 006458 531 PGQEERFKLLKLYLDKYIAQA----GS----------------------RKPGLVHRLFKSEQQ---KIEIKGLTDDILM 581 (644)
Q Consensus 531 p~~~er~~Il~~~l~~~~~~~----~~----------------------~~~~~~~~~~~~~~~---~~~~~~~~d~~l~ 581 (644)
|+.+.=..|..+.+..+.... +. ....+-..+|+++-. ....+.++++..+
T Consensus 644 ~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~ 723 (915)
T PTZ00111 644 IDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKK 723 (915)
T ss_pred CChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 776655556555554321100 00 000011234444421 1122457787766
Q ss_pred HHHHHc-------------------------------C-----CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 582 EAAAKT-------------------------------E-----GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 582 ~LA~~t-------------------------------~-----G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
.|...+ . -.+.|+|+.|++..+|.+...-...+|.+|+..|+.-
T Consensus 724 ~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L 803 (915)
T PTZ00111 724 VITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQI 803 (915)
T ss_pred HHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHH
Confidence 664310 1 1578999999999999888888899999999999988
Q ss_pred HHHhH
Q 006458 626 KVAEH 630 (644)
Q Consensus 626 ~~~~~ 630 (644)
.....
T Consensus 804 ~~~sl 808 (915)
T PTZ00111 804 VKSST 808 (915)
T ss_pred HHHHH
Confidence 75433
No 213
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.13 E-value=1.2e-09 Score=121.32 Aligned_cols=199 Identities=22% Similarity=0.266 Sum_probs=124.2
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--chhH
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GPQA 443 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~~~ 443 (644)
.+.+++|.......+...+..... .. .+++|+|++||||+++|+.+.... +.+|+.++|..+... ....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~---~~---~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~l 210 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP---SD---ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESEL 210 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC---CC---CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHh
Confidence 466788877766666554433221 12 349999999999999999998775 468999999887421 0000
Q ss_pred HHHHHHHHHHH-------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEEEEe
Q 006458 444 VTKIHQLFDWA-------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALAT 508 (644)
Q Consensus 444 ~~~l~~~f~~a-------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~tt 508 (644)
.+.....|..+ .....+++|||||++.| +...+..|..++..-. ....++.||+||
T Consensus 211 fg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l---------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~ 281 (445)
T TIGR02915 211 FGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL---------PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCAT 281 (445)
T ss_pred cCCCCCCcCCCccCCCCceeECCCCEEEEechhhC---------CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEec
Confidence 00000000000 00123678999999997 4455555555554321 112378899998
Q ss_pred CCC-------CCCCHHHhcccceeEecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 509 NRP-------GDLDSAVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 509 N~~-------~~ld~al~~Rfd~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
+.. ..+.+.|..|+ ..+.+..|...+|.. |++.++.++.... +.....+++
T Consensus 282 ~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~-----------------~~~~~~~~~ 343 (445)
T TIGR02915 282 NQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFAREL-----------------KRKTKGFTD 343 (445)
T ss_pred CCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHh-----------------CCCCCCCCH
Confidence 864 46778888888 556666666655554 5666665543211 111224899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHH
Q 006458 578 DILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 578 ~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
+.+..|..+..-.+.++|.+++.
T Consensus 344 ~a~~~L~~~~wpgNvreL~~~i~ 366 (445)
T TIGR02915 344 DALRALEAHAWPGNVRELENKVK 366 (445)
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 99999999876667788888875
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.11 E-value=2.7e-09 Score=118.87 Aligned_cols=221 Identities=16% Similarity=0.178 Sum_probs=147.6
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCCCCC---
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDVAPL--- 439 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l~~~--- 439 (644)
+-+.+.....|..++.........+ ..+++.|-||||||.++..+-+.| ..+|+.+|+-.+...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g---~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLG---SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCc---eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 3445555566666555443332222 369999999999999999998866 367888888776431
Q ss_pred --------------chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEE
Q 006458 440 --------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLA 505 (644)
Q Consensus 440 --------------g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI 505 (644)
+......+..-|.......+++||+|||.|.|+.. .+.++..|+........+++||
T Consensus 475 Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR---------SQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc---------cHHHHHHHhcCCcCCCCceEEE
Confidence 11122334444543334556899999999998643 3678888988887778889999
Q ss_pred EEeCCCCCC----CHHHhcccc-eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHH
Q 006458 506 LATNRPGDL----DSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDIL 580 (644)
Q Consensus 506 ~ttN~~~~l----d~al~~Rfd-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 580 (644)
+..|..+.. ..-+-+|++ ..|.|.+++..++..|+...|.... .+..+.+
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-------------------------~f~~~ai 600 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-------------------------AFENKAI 600 (767)
T ss_pred EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-------------------------hcchhHH
Confidence 988876532 223334654 5789999999999999999986541 2566777
Q ss_pred HHHHHHcCCCcH--HHHHHHHHHHHHHHhCCCC-------CccCHHHHHHHHHHHHHhH
Q 006458 581 MEAAAKTEGFSG--REIAKLMASVQAAVYGSEN-------CVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 581 ~~LA~~t~G~Sg--rdI~~L~~~~~aa~~~~~~-------~~lt~~~~~~al~~~~~~~ 630 (644)
+.+|++....|| |---.+|..+...+..+.. ..++.-++.+|++.+...+
T Consensus 601 elvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 601 ELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence 777777655555 3333345444333333322 5689999999999887655
No 215
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.07 E-value=1.5e-09 Score=121.37 Aligned_cols=216 Identities=17% Similarity=0.177 Sum_probs=132.0
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--chhH
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GPQA 443 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~~~ 443 (644)
.+.+++|.......+...+.... ..+ .++||+|++|||||++|+++.... +.+|+.++|+.+... ....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~---~~~---~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS---RSS---ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESEL 209 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh---ccC---CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHh
Confidence 36778998777766655443322 222 249999999999999999998886 478999999887321 0000
Q ss_pred HHHHHHHHHHH-------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCCEEEEEEe
Q 006458 444 VTKIHQLFDWA-------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLALAT 508 (644)
Q Consensus 444 ~~~l~~~f~~a-------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~viiI~tt 508 (644)
.+.....|..+ -....++.|||||++.| +...+..|..++..-. . ...++.||+||
T Consensus 210 fg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l---------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~ 280 (469)
T PRK10923 210 FGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM---------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAAT 280 (469)
T ss_pred cCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC---------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeC
Confidence 00000000000 00122568999999997 4455555555554321 1 12467899988
Q ss_pred CCC-------CCCCHHHhcccceeEecCCCCH----HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 509 NRP-------GDLDSAVADRIDEVLEFPLPGQ----EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 509 N~~-------~~ld~al~~Rfd~~i~~~~p~~----~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
+.. ..+.+.|..|| ..+.+..|.. +++..|+..++.++.... +..+..+++
T Consensus 281 ~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~-----------------~~~~~~~~~ 342 (469)
T PRK10923 281 HQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAAREL-----------------GVEAKLLHP 342 (469)
T ss_pred CCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHc-----------------CCCCCCcCH
Confidence 753 46778888898 3344444444 455567777776643221 112234899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 006458 578 DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 620 (644)
Q Consensus 578 ~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~ 620 (644)
+.+..|..+..-.+.++|.+++..+-.. ..+..|+.+++-
T Consensus 343 ~a~~~L~~~~wpgNv~eL~~~i~~~~~~---~~~~~i~~~~l~ 382 (469)
T PRK10923 343 ETEAALTRLAWPGNVRQLENTCRWLTVM---AAGQEVLIQDLP 382 (469)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHHCc
Confidence 9999999997766778888887533222 234566666653
No 216
>PRK12377 putative replication protein; Provisional
Probab=99.06 E-value=8.6e-10 Score=112.54 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=83.9
Q ss_pred CCCCccccC-hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhH
Q 006458 368 NGFGDVILH-PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA 443 (644)
Q Consensus 368 ~~~~~vig~-~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~ 443 (644)
.+|++++.. +.....+..+......... ...+++|+||||||||+|+.+|++.+ |..+++++..++...-...
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~---~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES 147 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH
Confidence 358888643 3333333332222222222 23579999999999999999999987 5677777665543211000
Q ss_pred H---HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-----CCCC
Q 006458 444 V---TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-----GDLD 515 (644)
Q Consensus 444 ~---~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~-----~~ld 515 (644)
. .....++.. .....||+|||++... .++.....|..++..- ......+|+|||.. ..+.
T Consensus 148 ~~~~~~~~~~l~~---l~~~dLLiIDDlg~~~-------~s~~~~~~l~~ii~~R--~~~~~ptiitSNl~~~~l~~~~~ 215 (248)
T PRK12377 148 YDNGQSGEKFLQE---LCKVDLLVLDEIGIQR-------ETKNEQVVLNQIIDRR--TASMRSVGMLTNLNHEAMSTLLG 215 (248)
T ss_pred HhccchHHHHHHH---hcCCCEEEEcCCCCCC-------CCHHHHHHHHHHHHHH--HhcCCCEEEEcCCCHHHHHHHhh
Confidence 0 011122222 3447899999997642 1233444555554433 22234567789964 2455
Q ss_pred HHHhcccc----eeEecCCCC
Q 006458 516 SAVADRID----EVLEFPLPG 532 (644)
Q Consensus 516 ~al~~Rfd----~~i~~~~p~ 532 (644)
..++||+- ..|.|..++
T Consensus 216 ~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 216 ERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred HHHHHHHhhCCCeEEEeCCcC
Confidence 66777762 336666555
No 217
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.06 E-value=2.2e-11 Score=110.24 Aligned_cols=112 Identities=26% Similarity=0.316 Sum_probs=56.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCC-CCCC---CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcccc
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGG-DVAP---LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNK 477 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~-~l~~---~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~ 477 (644)
|+||.|+||+|||++++++|+.+|..|.+|.+. ++.+ .|......-...|.+..----..|||+||+.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 699999999999999999999999999998764 3321 010000000000000000000249999999985
Q ss_pred CcCCHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCCC-----CCCHHHhccc
Q 006458 478 TYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRPG-----DLDSAVADRI 522 (644)
Q Consensus 478 ~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~ttN~~~-----~ld~al~~Rf 522 (644)
.+..+..+...+.+-. ..+..++||+|-|..+ .++.++++||
T Consensus 75 ---ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 ---PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ---CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 2233333333333311 2356789999999865 6889999998
No 218
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.6e-09 Score=115.05 Aligned_cols=132 Identities=21% Similarity=0.257 Sum_probs=93.0
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcCC-------------------------CeEEEeCCCC-CCCc----hhHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSGL-------------------------DYALMTGGDV-APLG----PQAVTKI 447 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~~-------------------------~~~~i~~~~l-~~~g----~~~~~~l 447 (644)
+.+..+||+||+|+|||++|+.+|+.+.+ +|+.++...- ...| .-.+..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34456999999999999999999998632 2333332110 0001 0134556
Q ss_pred HHHHHHHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccce
Q 006458 448 HQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDE 524 (644)
Q Consensus 448 ~~~f~~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~ 524 (644)
+.+.+.+... .+..|++||+++.| + ....+.+++.+++...++.||++|+.++.+.+.+.+|| .
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L---------d---~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc-~ 165 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM---------N---LQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC-R 165 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC---------C---HHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHh-h
Confidence 6666665532 34579999999997 2 33556666666665667888999999999999999999 9
Q ss_pred eEecCCCCHHHHHHHHHH
Q 006458 525 VLEFPLPGQEERFKLLKL 542 (644)
Q Consensus 525 ~i~~~~p~~~er~~Il~~ 542 (644)
.+.|++|+.++....|..
T Consensus 166 ~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhcCCCCCHHHHHHHHHh
Confidence 999999999988777653
No 219
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.04 E-value=1.3e-08 Score=113.32 Aligned_cols=211 Identities=18% Similarity=0.213 Sum_probs=127.4
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHH
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~ 445 (644)
.+..+++.......+...+...... . .++|++|++||||+++|+++.... +.+|+.++|..+...- ..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~---~---~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~--~~- 211 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS---Q---ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL--LE- 211 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC---C---cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH--HH-
Confidence 3556777665555543332222211 1 349999999999999999997765 5789999998874210 00
Q ss_pred HHHHHHHH--------------HHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEE
Q 006458 446 KIHQLFDW--------------AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIV 503 (644)
Q Consensus 446 ~l~~~f~~--------------a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~vi 503 (644)
..+|.. ......+++|||||++.| +...+..|..++..-. ....++.
T Consensus 212 --~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l---------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 212 --SELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM---------PLVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred --HHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 001100 001123578999999997 3345555555554321 1124688
Q ss_pred EEEEeCCC-------CCCCHHHhcccceeEecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhc
Q 006458 504 LALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 572 (644)
Q Consensus 504 iI~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (644)
||+|||.. ..+.+.+..|+ ..+.+..|+..+|.. |+..++.++.... ...+
T Consensus 281 ii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~-----------------~~~~ 342 (457)
T PRK11361 281 IIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRREDISLLANHFLQKFSSEN-----------------QRDI 342 (457)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchhhHHHHHHHHHHHHHHHc-----------------CCCC
Confidence 99999864 36777788888 446666666666544 5555555543210 1112
Q ss_pred cCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 006458 573 KGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 620 (644)
Q Consensus 573 ~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~ 620 (644)
..++++.+..|..+....+.++|.+++..+-. ...+..|+.+++-
T Consensus 343 ~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~---~~~~~~i~~~~l~ 387 (457)
T PRK11361 343 IDIDPMAMSLLTAWSWPGNIRELSNVIERAVV---MNSGPIIFSEDLP 387 (457)
T ss_pred CCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHH---hCCCCcccHHHCh
Confidence 34899999999988766677888887753322 2334456665554
No 220
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.02 E-value=1.1e-09 Score=105.48 Aligned_cols=131 Identities=23% Similarity=0.340 Sum_probs=80.8
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC-------chh
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL-------GPQ 442 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~-------g~~ 442 (644)
+||.......+...+....... .+|||+|++||||+++|++|-+.. +.||+.++|+.+..- |..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~------~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD------LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST------S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBC
T ss_pred CEeCCHHHHHHHHHHHHHhCCC------CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccc
Confidence 4677777777766554443332 349999999999999999998876 478999999887421 100
Q ss_pred ------HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh-----CC---CCCCEEEEEEe
Q 006458 443 ------AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-----GD---QSKDIVLALAT 508 (644)
Q Consensus 443 ------~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~-----~~---~~~~viiI~tt 508 (644)
....-..+|..|. ++.||||||+.| +...+..|..+|+.- +. ...++.||++|
T Consensus 75 ~~~~~~~~~~~~G~l~~A~----~GtL~Ld~I~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 75 KGAFTGARSDKKGLLEQAN----GGTLFLDEIEDL---------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp SSSSTTTSSEBEHHHHHTT----TSEEEEETGGGS----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred cccccccccccCCceeecc----ceEEeecchhhh---------HHHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 0000113444432 679999999998 456677777777642 11 23489999999
Q ss_pred CCC-------CCCCHHHhccc
Q 006458 509 NRP-------GDLDSAVADRI 522 (644)
Q Consensus 509 N~~-------~~ld~al~~Rf 522 (644)
+.+ ..|.+.|.-|+
T Consensus 142 ~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 142 SKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp SS-HHHHHHTTSS-HHHHHHH
T ss_pred CcCHHHHHHcCCChHHHHHHh
Confidence 863 35666666555
No 221
>PRK15115 response regulator GlrR; Provisional
Probab=99.01 E-value=1.4e-08 Score=112.77 Aligned_cols=185 Identities=20% Similarity=0.288 Sum_probs=117.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHHHHHHHHHH-------H-------HhcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDW-------A-------KKSKRGLLLF 464 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~~l~~~f~~-------a-------~~~~~~~VL~ 464 (644)
+++|+|++|||||++|+.+.... +.+|+.++|..+..... . ..+|.. + .....++.||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~--~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 233 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL--E---SELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH--H---HHhcCCCcCCCCCCccCCCCcEEECCCCEEE
Confidence 49999999999999999998875 47899999988743100 0 011110 0 0112257899
Q ss_pred EeccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCCEEEEEEeCCC-------CCCCHHHhcccceeEecC
Q 006458 465 IDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLALATNRP-------GDLDSAVADRIDEVLEFP 529 (644)
Q Consensus 465 IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~viiI~ttN~~-------~~ld~al~~Rfd~~i~~~ 529 (644)
|||+|.| +...+..|..++..-. . ...++.||+||+.. ..|.+.+..|+ ..+.+.
T Consensus 234 l~~i~~l---------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~ 303 (444)
T PRK15115 234 LDEIGDM---------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLK 303 (444)
T ss_pred EEccccC---------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeec
Confidence 9999997 4455555555554321 1 12378899988853 25666677777 556777
Q ss_pred CCCHHHHHH----HHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 006458 530 LPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAA 605 (644)
Q Consensus 530 ~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa 605 (644)
.|...+|.. |++.++.++.... +..+..++++.+..|..+....+.++|.+++..+-.
T Consensus 304 lPpLr~R~eDi~~l~~~~l~~~~~~~-----------------~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~- 365 (444)
T PRK15115 304 IPALAERTEDIPLLANHLLRQAAERH-----------------KPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA- 365 (444)
T ss_pred CCChHhccccHHHHHHHHHHHHHHHh-----------------CCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH-
Confidence 777777654 4555555542210 111224899999999999866677888887754322
Q ss_pred HhCCCCCccCHHHHHH
Q 006458 606 VYGSENCVLDPSLFRE 621 (644)
Q Consensus 606 ~~~~~~~~lt~~~~~~ 621 (644)
...+..|+.+++..
T Consensus 366 --~~~~~~i~~~~l~~ 379 (444)
T PRK15115 366 --LTSSPVISDALVEQ 379 (444)
T ss_pred --hCCCCccChhhhhh
Confidence 23445677666643
No 222
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.4e-09 Score=113.43 Aligned_cols=144 Identities=23% Similarity=0.334 Sum_probs=100.0
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe-CCCCCCCc-hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMT-GGDVAPLG-PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 475 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~-~~~l~~~g-~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r 475 (644)
.|..++||+||||+|||.||-.+|...+.||+.+- ..++.++. ..-...+.++|+.|.++. -+||++|+++.|+.=.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-LSIIVVDDIERLLDYV 614 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-ceEEEEcchhhhhccc
Confidence 46778999999999999999999999999999764 44444432 334456889999998775 6899999999986422
Q ss_pred c-cCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCC-HHHhcccceeEecCCCCH-HHHHHHHHH
Q 006458 476 N-KTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLD-SAVADRIDEVLEFPLPGQ-EERFKLLKL 542 (644)
Q Consensus 476 ~-~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld-~al~~Rfd~~i~~~~p~~-~er~~Il~~ 542 (644)
. +..++...-++|..+|+.-....++.+|++||....-+. -.+++.|+..+++|..+. ++...++..
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 1 122233444455555544434444667777776544332 356678999999998876 666666553
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.98 E-value=2.6e-09 Score=108.76 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=88.8
Q ss_pred CCCCCccccC-hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchh
Q 006458 367 GNGFGDVILH-PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ 442 (644)
Q Consensus 367 ~~~~~~vig~-~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~ 442 (644)
..+|++++.. +.....+..+.....+... ...+++|+||||||||+|+.+|++++ |..+++++..++......
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~---~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~ 144 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDG---NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD 144 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhcc---CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHH
Confidence 3468888643 3333344444333332221 13479999999999999999999987 677888876555321100
Q ss_pred H----HHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-----CC
Q 006458 443 A----VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-----GD 513 (644)
Q Consensus 443 ~----~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~-----~~ 513 (644)
. ......++... ...+||+|||++... .++.....+..++..- ...+..+|+|||.. ..
T Consensus 145 ~~~~~~~~~~~~l~~l---~~~dlLvIDDig~~~-------~s~~~~~~l~~Ii~~R--y~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 145 TFSNSETSEEQLLNDL---SNVDLLVIDEIGVQT-------ESRYEKVIINQIVDRR--SSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred HHhhccccHHHHHHHh---ccCCEEEEeCCCCCC-------CCHHHHHHHHHHHHHH--HhCCCCEEEeCCCCHHHHHHH
Confidence 0 01112233332 247899999998852 1234445566565432 23345677789964 24
Q ss_pred CCHHHhccc----ceeEecCCCC
Q 006458 514 LDSAVADRI----DEVLEFPLPG 532 (644)
Q Consensus 514 ld~al~~Rf----d~~i~~~~p~ 532 (644)
+...+++|+ ...|.|..++
T Consensus 213 ~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 213 LGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hChHHHHHHHHCCceEEEeeCCc
Confidence 566777776 2466776655
No 224
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.98 E-value=1.3e-08 Score=112.79 Aligned_cols=219 Identities=17% Similarity=0.175 Sum_probs=134.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCc--------hhHHHHHHHHHHHHHhcCCCeEEEEeccchhh
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG--------PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFL 472 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g--------~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~ 472 (644)
-||||+|.||||||.+.+.+.+.+..-.+. +|-.-...| +++...+ +-.-|.....++|-.|||||+|
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTayVtrd~dtkqlV--LesGALVLSD~GiCCIDEFDKM- 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAYVTKDPDTRQLV--LESGALVLSDNGICCIDEFDKM- 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceeeEEecCccceee--eecCcEEEcCCceEEchhhhhh-
Confidence 489999999999999999999987544332 211100000 0000000 0000111233678999999998
Q ss_pred hccccCcCCHHHHHHHHHHHHHh----------CCCCCCEEEEEEeCCCC-------------CCCHHHhcccceeE-ec
Q 006458 473 CERNKTYMSEAQRSALNALLFRT----------GDQSKDIVLALATNRPG-------------DLDSAVADRIDEVL-EF 528 (644)
Q Consensus 473 ~~r~~~~~~~~~~~~l~~lL~~~----------~~~~~~viiI~ttN~~~-------------~ld~al~~Rfd~~i-~~ 528 (644)
+...+.+|...+..- -..+..+-|++++|... .|+|.|++|||.++ -+
T Consensus 539 --------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylll 610 (804)
T KOG0478|consen 539 --------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLL 610 (804)
T ss_pred --------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEe
Confidence 456677777776541 13456677888888532 57899999998776 56
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchh-hhhh---hhhhhhccCCCHHHHHHHHHHc---------CC---CcH
Q 006458 529 PLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHR-LFKS---EQQKIEIKGLTDDILMEAAAKT---------EG---FSG 592 (644)
Q Consensus 529 ~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~d~~l~~LA~~t---------~G---~Sg 592 (644)
+.|+...=+.|..+...-|...........+.. +++. +..+..+..+++++...+...+ .| -+.
T Consensus 611 D~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~ 690 (804)
T KOG0478|consen 611 DKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATP 690 (804)
T ss_pred cCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhH
Confidence 777776444565555555443222222222322 2333 2344445567777766665443 12 245
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHH
Q 006458 593 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 593 rdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~ 631 (644)
|++..|++...+.+.-.....+...++++++........
T Consensus 691 rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~aL~ 729 (804)
T KOG0478|consen 691 RQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREALK 729 (804)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHhc
Confidence 889999987777777777789999999999988765443
No 225
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=9e-09 Score=106.77 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=87.4
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcCCC----------------eEEEeCCCC-CCCchhHHHHHHHHHHHHHh---c
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSGLD----------------YALMTGGDV-APLGPQAVTKIHQLFDWAKK---S 457 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~~~----------------~~~i~~~~l-~~~g~~~~~~l~~~f~~a~~---~ 457 (644)
.-+..+||+||+|+||+.+|..+|..+-+. ++.+....- ...+ ...++.+...+.. .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~---idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHS---IETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCc---HHHHHHHHHHHhhCccC
Confidence 334568999999999999999999887331 222211100 0122 3344555444432 2
Q ss_pred CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCC
Q 006458 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 458 ~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~ 532 (644)
.++.|++||++|.| .....|.||+.+++.+.+++||+.|+.++.+.|.++||| ..+.|+++.
T Consensus 94 ~~~kv~ii~~ad~m------------t~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 94 SPYKIYIIHEADRM------------TLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred CCceEEEEechhhc------------CHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccchh
Confidence 34579999999997 345789999999999999999999999999999999999 888888653
No 226
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.97 E-value=3.4e-08 Score=110.73 Aligned_cols=211 Identities=18% Similarity=0.208 Sum_probs=127.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe-CCCCCC----
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT-GGDVAP---- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~-~~~l~~---- 438 (644)
.+.+.+.++|..+..-.+.|+.++.... ....+.+-+||+||||||||++++.||+++|..+..-. ...+..
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~---~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMF---SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHh---ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 4566778999998877777776655432 22233456889999999999999999999998777642 222100
Q ss_pred ------Cchh---HHHHHHHHHHH----HHhc-----------CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH
Q 006458 439 ------LGPQ---AVTKIHQLFDW----AKKS-----------KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 494 (644)
Q Consensus 439 ------~g~~---~~~~l~~~f~~----a~~~-----------~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~ 494 (644)
.... ....+.. |.. +.+. ....||+|||+-.++.... ...+..|..++.
T Consensus 89 ~~d~~s~~~~~~~f~sq~~~-F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-----~~f~~~L~~~l~- 161 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQSDK-FSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT-----SRFREALRQYLR- 161 (519)
T ss_pred cccccccccccccccchhhh-hccccccccccccccccCCCcCCCceEEEeeccccccchhH-----HHHHHHHHHHHH-
Confidence 0000 0111111 111 1111 2356999999987543211 233334444433
Q ss_pred hCCCCC-CEEEEEE-e------CCC--------CCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCC
Q 006458 495 TGDQSK-DIVLALA-T------NRP--------GDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKP 556 (644)
Q Consensus 495 ~~~~~~-~viiI~t-t------N~~--------~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~ 556 (644)
.... .+|||+| + |.. ..|++.++. ++ .+|.|++-...-..+-|...+.........
T Consensus 162 --~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~--- 235 (519)
T PF03215_consen 162 --SSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSG--- 235 (519)
T ss_pred --cCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcC---
Confidence 2223 7777777 1 111 146677776 45 789999999988888888887764211000
Q ss_pred CcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 006458 557 GLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 607 (644)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~ 607 (644)
.... ......++.|+..+.| ||+..+.++|..+.
T Consensus 236 ------------~~~~-p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 236 ------------KNKV-PDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred ------------CccC-CChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 0000 0123468999988655 99999999998877
No 227
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.96 E-value=1.6e-08 Score=107.49 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=47.1
Q ss_pred CC-ccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-------CeEEEeC
Q 006458 370 FG-DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-------DYALMTG 433 (644)
Q Consensus 370 ~~-~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~-------~~~~i~~ 433 (644)
|+ +++|+++.+..+...+...... .+...+.++|+||||||||++|++|++.++. +++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g--~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQG--LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 77 8999999988876655444321 1223356899999999999999999999976 7777766
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.96 E-value=2.6e-08 Score=105.89 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=70.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhH----HHHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA----VTKIHQLFDWAKKSKRGLLLFIDEADAFLC 473 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~----~~~l~~~f~~a~~~~~~~VL~IDEid~l~~ 473 (644)
.+++||||||||||+|+.++|+.+ |..+++++..++....... .......+.. .....+|+|||++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~---l~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL---LINCDLLIIDDLGTEKI 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH---hccCCEEEEeccCCCCC
Confidence 679999999999999999999987 6778888776653311000 0011111222 23357999999987521
Q ss_pred ccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-----CCCCHHHhcccc---eeEecCCCC
Q 006458 474 ERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-----GDLDSAVADRID---EVLEFPLPG 532 (644)
Q Consensus 474 ~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~-----~~ld~al~~Rfd---~~i~~~~p~ 532 (644)
.+.....|..++...-.. +..+|+|||.+ ..+++.+.+|+- .+|.|.-.+
T Consensus 261 -------t~~~~~~Lf~iin~R~~~--~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 261 -------TEFSKSELFNLINKRLLR--QKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred -------CHHHHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 223333444444333111 23467788863 235677888762 344554333
No 229
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=2.9e-08 Score=104.09 Aligned_cols=127 Identities=18% Similarity=0.124 Sum_probs=94.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCC-----------C--eEEEeCCCCCCCchhHHHHHHHHHHHHHhc----CCCe
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGL-----------D--YALMTGGDVAPLGPQAVTKIHQLFDWAKKS----KRGL 461 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~-----------~--~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~----~~~~ 461 (644)
-...+||+|+.|+||+.+++.+++.+.+ | ++.++... ...+ ...++.+....... ..+.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~i~---vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KDLS---KSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-CcCC---HHHHHHHHHHhccCCcccCCce
Confidence 3346889999999999999999988721 1 33332100 1111 23444554444332 2578
Q ss_pred EEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHH
Q 006458 462 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLK 541 (644)
Q Consensus 462 VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~ 541 (644)
|++||++|.+ .....|.||+.+++.+.+++||++|+.++.+-+.+++|| .+++|.+|+.++....|.
T Consensus 93 vvII~~~e~m------------~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 93 ILIIKNIEKT------------SNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred EEEEeccccc------------CHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHHHHH
Confidence 9999999986 245788999999999999999999999999999999999 999999999988876665
Q ss_pred H
Q 006458 542 L 542 (644)
Q Consensus 542 ~ 542 (644)
.
T Consensus 160 ~ 160 (299)
T PRK07132 160 S 160 (299)
T ss_pred H
Confidence 4
No 230
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.94 E-value=5.5e-08 Score=103.85 Aligned_cols=240 Identities=18% Similarity=0.216 Sum_probs=135.3
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC----CCCCC------
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG----GDVAP------ 438 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~----~~l~~------ 438 (644)
.|.-++|++.++..|-- +. -.....++||-|+.|||||+++++|+..|.---+...| ....+
T Consensus 15 pf~aivGqd~lk~aL~l--~a------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~ 86 (423)
T COG1239 15 PFTAIVGQDPLKLALGL--NA------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDE 86 (423)
T ss_pred chhhhcCchHHHHHHhh--hh------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHH
Confidence 37889999999888722 11 11233679999999999999999999988311111111 00000
Q ss_pred ------------------------CchhHHH------HHHHHHHH---------HHhcCCCeEEEEeccchhhhccccCc
Q 006458 439 ------------------------LGPQAVT------KIHQLFDW---------AKKSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 439 ------------------------~g~~~~~------~l~~~f~~---------a~~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
++. +.. .+.+.... .-+-+ .+||+|||+..|
T Consensus 87 c~~k~~e~~~~~~~~r~v~~v~lPl~a-teDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL-------- 156 (423)
T COG1239 87 CRAKGDELEWLPREKRKVPFVALPLGA-TEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL-------- 156 (423)
T ss_pred HHhhccccccccccceecceecCCCcc-chhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc--------
Confidence 000 000 01111110 00111 369999999987
Q ss_pred CCHHHHHHHHHHHHHh----C------CCCCCEEEEEEeCCC-CCCCHHHhcccceeEecCCC-CHHHHHHHHHHHHHHH
Q 006458 480 MSEAQRSALNALLFRT----G------DQSKDIVLALATNRP-GDLDSAVADRIDEVLEFPLP-GQEERFKLLKLYLDKY 547 (644)
Q Consensus 480 ~~~~~~~~l~~lL~~~----~------~~~~~viiI~ttN~~-~~ld~al~~Rfd~~i~~~~p-~~~er~~Il~~~l~~~ 547 (644)
.+....+|...+..- . ..+.+|++|+|+|.- ..|-|.|++||+..|.+..| +.++|..|++..+..
T Consensus 157 -~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f- 234 (423)
T COG1239 157 -DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF- 234 (423)
T ss_pred -cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh-
Confidence 334444444444331 1 245689999999974 58999999999999988776 578899999887764
Q ss_pred hhhhCCCCCCcchhhhhhhh-----------hhhhccCCCHHHHHHHHHHcC--CCc-HHHHHHHHHHHHHHHhCCCCCc
Q 006458 548 IAQAGSRKPGLVHRLFKSEQ-----------QKIEIKGLTDDILMEAAAKTE--GFS-GREIAKLMASVQAAVYGSENCV 613 (644)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~l~~LA~~t~--G~S-grdI~~L~~~~~aa~~~~~~~~ 613 (644)
.. .+..+...+.... ..+.--.+++..+..++..+. +.. .|.-.-++....+.+...+...
T Consensus 235 ~~-----~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~ 309 (423)
T COG1239 235 EA-----VPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTE 309 (423)
T ss_pred hc-----CcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCcee
Confidence 11 1111111111110 111112356666666666542 222 1222223333333333344478
Q ss_pred cCHHHHHHHHHHHHHhHHHH
Q 006458 614 LDPSLFREVVDYKVAEHQQR 633 (644)
Q Consensus 614 lt~~~~~~al~~~~~~~~~~ 633 (644)
++.++++.+.........++
T Consensus 310 v~~~Di~~a~~l~l~hR~~~ 329 (423)
T COG1239 310 VEEEDIREAAELALLHRRRR 329 (423)
T ss_pred eehhhHHHHHhhhhhhhhcc
Confidence 88899999988775533333
No 231
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.94 E-value=2e-08 Score=114.40 Aligned_cols=250 Identities=18% Similarity=0.183 Sum_probs=145.1
Q ss_pred CCccccChHHHHHHHH-HHHHhhchhccCC---CCccEEEecCCCCChHHHHHHHHHHcCCCeEEE-eCCCCCCCchhHH
Q 006458 370 FGDVILHPSLQKRIRQ-LSGATANTKAHNA---PFRNMLFYGPPGTGKTMAARELARKSGLDYALM-TGGDVAPLGPQAV 444 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~-l~~~~~~~~~~~~---p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i-~~~~l~~~g~~~~ 444 (644)
.-.|.|++.+++.|.- +..........+. .--|+||.|.||||||.|.+.+++.+...++.- .++.-.++...
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa-- 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA-- 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE--
Confidence 3445677777777632 2222211111111 124899999999999999999999876554432 12111111000
Q ss_pred HHHHHHH--HH-----HHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH-h-C--------CCCCCEEEEEE
Q 006458 445 TKIHQLF--DW-----AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-T-G--------DQSKDIVLALA 507 (644)
Q Consensus 445 ~~l~~~f--~~-----a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~-~-~--------~~~~~viiI~t 507 (644)
..+.-+ +| |.....++|++|||+|++ ....+..+...+.. + . ..+..+-|+++
T Consensus 363 -v~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm---------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAA 432 (682)
T COG1241 363 -VVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM---------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAA 432 (682)
T ss_pred -EEEccCCCeEEEeCCEEEEecCCEEEEEeccCC---------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhh
Confidence 000000 11 112233679999999997 33344444333322 1 1 12344566777
Q ss_pred eCCCC-------------CCCHHHhcccceeEec-CCCCHHHHHHHHHHHHHHHhhhhCCCC-------C--Ccchhhhh
Q 006458 508 TNRPG-------------DLDSAVADRIDEVLEF-PLPGQEERFKLLKLYLDKYIAQAGSRK-------P--GLVHRLFK 564 (644)
Q Consensus 508 tN~~~-------------~ld~al~~Rfd~~i~~-~~p~~~er~~Il~~~l~~~~~~~~~~~-------~--~~~~~~~~ 564 (644)
+|... +|+++|++|||.++.+ +.|+.+.=..|..+.+..+........ . ..-..+++
T Consensus 433 aNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lr 512 (682)
T COG1241 433 ANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLR 512 (682)
T ss_pred hCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHH
Confidence 77643 5789999999987755 667776555666666665532111100 0 00012233
Q ss_pred hh---hhhhhccCCCHHHHHHHHHHcC---------------CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 565 SE---QQKIEIKGLTDDILMEAAAKTE---------------GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 565 ~~---~~~~~~~~~~d~~l~~LA~~t~---------------G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
.+ ......+.+++++.+.|...+. ..+.|+|..+++...|.+..+-..+++.+|+++|++-.
T Consensus 513 kYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv 592 (682)
T COG1241 513 KYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLV 592 (682)
T ss_pred HHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 32 2222225688888777766531 25689999999999888888888999999999999887
Q ss_pred HHhHH
Q 006458 627 VAEHQ 631 (644)
Q Consensus 627 ~~~~~ 631 (644)
.....
T Consensus 593 ~~~l~ 597 (682)
T COG1241 593 DFSLK 597 (682)
T ss_pred HHHHH
Confidence 65443
No 232
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.93 E-value=3.3e-08 Score=109.01 Aligned_cols=251 Identities=15% Similarity=0.100 Sum_probs=150.7
Q ss_pred CCccccChHHHHHHH-HHHHHhhchhccCCCCc---cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC--CC----C
Q 006458 370 FGDVILHPSLQKRIR-QLSGATANTKAHNAPFR---NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV--AP----L 439 (644)
Q Consensus 370 ~~~vig~~~~~~~l~-~l~~~~~~~~~~~~p~~---~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l--~~----~ 439 (644)
|-.|.|++.++.-|. .+.........++-+.+ ||+++|.||||||-+.++.+..+...++.- |..- .+ +
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-GkaSSaAGLTaaV 422 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKASSAAGLTAAV 422 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-CcccccccceEEE
Confidence 777889999988773 33333332223343443 799999999999999999999886655432 1111 00 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC---------CCCCCEEEEEEeCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---------DQSKDIVLALATNR 510 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~---------~~~~~viiI~ttN~ 510 (644)
..+..+.-..+=.-|......+|-.|||||++- ...+...+.++-+..- .-+....||+++|.
T Consensus 423 vkD~esgdf~iEAGALmLADnGICCIDEFDKMd--------~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANP 494 (764)
T KOG0480|consen 423 VKDEESGDFTIEAGALMLADNGICCIDEFDKMD--------VKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANP 494 (764)
T ss_pred EecCCCCceeeecCcEEEccCceEEechhcccC--------hHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCC
Confidence 000000000000001222335799999999972 1134555555544421 13445667778886
Q ss_pred CC-------------CCCHHHhcccceeE-ecCCCCHHHHHHHHHHHHHHHhhhhCCCCC--Ccchhhhhhh---hhhhh
Q 006458 511 PG-------------DLDSAVADRIDEVL-EFPLPGQEERFKLLKLYLDKYIAQAGSRKP--GLVHRLFKSE---QQKIE 571 (644)
Q Consensus 511 ~~-------------~ld~al~~Rfd~~i-~~~~p~~~er~~Il~~~l~~~~~~~~~~~~--~~~~~~~~~~---~~~~~ 571 (644)
.. .+++++++|||.++ -++.|++..=..|-++.++....-...... ......++.+ ...+
T Consensus 495 v~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~- 573 (764)
T KOG0480|consen 495 VGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNF- 573 (764)
T ss_pred cCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhc-
Confidence 43 57899999999766 568899888778877777663321111111 0111112221 1111
Q ss_pred ccCCCHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 572 IKGLTDDILMEAAAKT---------------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 572 ~~~~~d~~l~~LA~~t---------------~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
.+.++.+.-+.|.+.+ .+.+.|+|+.|++...|.+...-...+|.+++.++++-.....
T Consensus 574 ~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 574 KPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 1345665555555442 2567899999999999888877778999999999999876654
No 233
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.93 E-value=2.3e-08 Score=114.36 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=85.8
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC------------------CCCCCEEEEEEeCCC--CCCCHHHh
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------------------DQSKDIVLALATNRP--GDLDSAVA 519 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~------------------~~~~~viiI~ttN~~--~~ld~al~ 519 (644)
+++|||||++.| +...+..|..+|+.-. ..+.++.+|+++|.. ..++|.|.
T Consensus 227 GGtL~LDei~~L---------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~ 297 (637)
T PRK13765 227 KGVLFIDEINTL---------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALR 297 (637)
T ss_pred CcEEEEeChHhC---------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHH
Confidence 467888888886 3344445555553211 012367899988874 56799999
Q ss_pred cccc---eeEecCCC---CHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC---C-
Q 006458 520 DRID---EVLEFPLP---GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE---G- 589 (644)
Q Consensus 520 ~Rfd---~~i~~~~p---~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~---G- 589 (644)
.||. ..++|+.- +.+.+..+++.+....... + ....++++.+..|.+.+. |
T Consensus 298 ~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~-G------------------~l~~f~~eAVa~LI~~~~R~ag~ 358 (637)
T PRK13765 298 SRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRD-G------------------KIPHFDRDAVEEIIREAKRRAGR 358 (637)
T ss_pred HHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhc-c------------------CCCCCCHHHHHHHHHHHHHHhCC
Confidence 9985 55666532 3455555554333222110 0 112378887777776542 1
Q ss_pred -----CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 590 -----FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 590 -----~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
+..++|..|++.+...+...+...++.+++..++..
T Consensus 359 r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 359 KGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 346899999987776676666778999999888754
No 234
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.92 E-value=2.1e-08 Score=112.01 Aligned_cols=219 Identities=17% Similarity=0.182 Sum_probs=133.0
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--chhHH
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--GPQAV 444 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--g~~~~ 444 (644)
+..++|.......+...+...... . .++++.|.+||||+++|+++.... +.+|+.++|..+... .....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~---~---~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS---D---ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc---C---CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhc
Confidence 346788766666664443332211 1 349999999999999999998875 478999999887320 00000
Q ss_pred HHHHHHHHHH-------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEEEEeC
Q 006458 445 TKIHQLFDWA-------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATN 509 (644)
Q Consensus 445 ~~l~~~f~~a-------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~ttN 509 (644)
+.....|..+ .....++.|||||++.| +...+..|..++..-. ....++.||+||+
T Consensus 207 g~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l---------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 207 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM---------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred CCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC---------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 0000000000 00122678999999997 4455555555554321 1123678899887
Q ss_pred CC-------CCCCHHHhcccc-eeEecCCCC--HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHH
Q 006458 510 RP-------GDLDSAVADRID-EVLEFPLPG--QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 579 (644)
Q Consensus 510 ~~-------~~ld~al~~Rfd-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 579 (644)
.. ..+.+.|..|+. ..|++|++. .+++..++..++..+.... +.....++++.
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~-----------------~~~~~~~~~~a 340 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAREL-----------------DVEPKLLDPEA 340 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHh-----------------CCCCCCcCHHH
Confidence 53 367778888884 355666655 4667777777777653221 11123489999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 580 LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 580 l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
+..|..+..--+.++|.+++..+-.. ..+..|+.+++...+
T Consensus 341 ~~~L~~~~wpgNvreL~~~~~~~~~~---~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 341 LERLKQLRWPGNVRQLENLCRWLTVM---ASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHhchHHH
Confidence 99999986555668888887643332 233567777765433
No 235
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=4.2e-08 Score=99.83 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=85.8
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCC----------------------CeEEEeCCCCCCCchhHHHHHHHHHHHHH-
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGL----------------------DYALMTGGDVAPLGPQAVTKIHQLFDWAK- 455 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~----------------------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~- 455 (644)
++..+||+||+|+||..+|..+|..+-+ +++.+... ..+.+.+....+...+....
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~-~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQ-KNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCC-cccCCHHHHHHHHHHHccCch
Confidence 4456999999999999999999988621 12222111 11233333333333332111
Q ss_pred hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCC
Q 006458 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p 531 (644)
....+.|++||++|+| .....|.||+.+++.+.+++||++|+.++.+.|.++||+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m------------~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL------------NKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh------------CHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 1234689999999996 356899999999999999999999999999999999999 77888777
No 236
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2.5e-08 Score=106.90 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=130.4
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCCCCCCC-----
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAPL----- 439 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~~l~~~----- 439 (644)
-..++|.+.-...++.+....... ...+++++.|-||||||.+...+-..++ ...+++||..+...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 466788777777776655433222 2336799999999999999887765542 23477888765321
Q ss_pred -----------chhHHHHHHHHHHHH-HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEE
Q 006458 440 -----------GPQAVTKIHQLFDWA-KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALA 507 (644)
Q Consensus 440 -----------g~~~~~~l~~~f~~a-~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~t 507 (644)
+..........|..- .....+.||++||+|.|... .+.+|..++..-.-....+++|+.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr---------~~~vLy~lFewp~lp~sr~iLiGi 295 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR---------SQTVLYTLFEWPKLPNSRIILIGI 295 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc---------ccceeeeehhcccCCcceeeeeee
Confidence 111112222333332 33334789999999999632 234566666555567788999999
Q ss_pred eCCCCCCC---HHHhccc---ceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHH
Q 006458 508 TNRPGDLD---SAVADRI---DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILM 581 (644)
Q Consensus 508 tN~~~~ld---~al~~Rf---d~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 581 (644)
.|..+.-| +.|..|. +..+.|++|+.+++..||+..+...... .+-+..+.
T Consensus 296 ANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~-----------------------~~~~~Aie 352 (529)
T KOG2227|consen 296 ANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS-----------------------IFLNAAIE 352 (529)
T ss_pred hhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc-----------------------ccchHHHH
Confidence 99865333 3333332 6789999999999999999998764311 13346899
Q ss_pred HHHHHcCCCcHHHHHHHHHHHH
Q 006458 582 EAAAKTEGFSGREIAKLMASVQ 603 (644)
Q Consensus 582 ~LA~~t~G~SgrdI~~L~~~~~ 603 (644)
.+|++..|.|| |+++++.-++
T Consensus 353 ~~ArKvaa~SG-DlRkaLdv~R 373 (529)
T KOG2227|consen 353 LCARKVAAPSG-DLRKALDVCR 373 (529)
T ss_pred HHHHHhccCch-hHHHHHHHHH
Confidence 99999999887 7887764444
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=3.3e-08 Score=99.00 Aligned_cols=168 Identities=19% Similarity=0.291 Sum_probs=91.6
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCC---CeEEEeCCCCC---------------------------C---------Cc
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGL---DYALMTGGDVA---------------------------P---------LG 440 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~---~~~~i~~~~l~---------------------------~---------~g 440 (644)
..+++|+||.|+|||++++.+.+.+.. ..+++...... . ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456999999999999999999998832 11122110000 0 01
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeccchhh-hccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC------CC
Q 006458 441 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFL-CERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP------GD 513 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~-~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~------~~ 513 (644)
......+..++..........||+|||++.+. .... .......+..++.... ...++.+|+++... ..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----~~~~~~~l~~~~~~~~-~~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----DKDFLKSLRSLLDSLL-SQQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----THHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----hHHHHHHHHHHHhhcc-ccCCceEEEECCchHHHHHhhc
Confidence 12234455666666655545899999999986 2111 1223333444443322 33445555443321 12
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
-...+.+|+.. +++++.+.++...++...+... .. + ..++..++.+...|.| .|+
T Consensus 175 ~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~---------------------~-~~~~~~~~~i~~~~gG-~P~ 229 (234)
T PF01637_consen 175 DKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IK---------------------L-PFSDEDIEEIYSLTGG-NPR 229 (234)
T ss_dssp TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-----------------------------HHHHHHHHHHHTT--HH
T ss_pred ccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hc---------------------c-cCCHHHHHHHHHHhCC-CHH
Confidence 34456678866 9999999999999999887653 11 0 1488999999999977 455
Q ss_pred HHHH
Q 006458 594 EIAK 597 (644)
Q Consensus 594 dI~~ 597 (644)
-|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 238
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=7.9e-08 Score=100.06 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=89.4
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHcCCCe-------------EEE---eCCCCCC---Cch-hHHHHHHHHHHHHH
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDY-------------ALM---TGGDVAP---LGP-QAVTKIHQLFDWAK 455 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~-------------~~i---~~~~l~~---~g~-~~~~~l~~~f~~a~ 455 (644)
.+..+..+||+|| +||+++|+.+|..+.+.- ..+ +-.|+.. .|. -....++.+...+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3344457999996 689999999998763210 000 1111111 111 12345555554444
Q ss_pred h---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCC
Q 006458 456 K---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 456 ~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~ 532 (644)
. ..+..|++||++|.| .....|.||+.+++.+.+++||++|+.++.+.|.++||| .+|+|+. +
T Consensus 98 ~~p~~~~~kV~II~~ad~m------------~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~ 163 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKM------------HVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-N 163 (290)
T ss_pred hCcccCCcEEEEeehhhhc------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcc-eeeeCCC-c
Confidence 3 234579999999997 345789999999999999999999999999999999999 8999976 5
Q ss_pred HHHHHHHHH
Q 006458 533 QEERFKLLK 541 (644)
Q Consensus 533 ~~er~~Il~ 541 (644)
.+....++.
T Consensus 164 ~~~~~~~L~ 172 (290)
T PRK07276 164 EAYLIQLLE 172 (290)
T ss_pred HHHHHHHHH
Confidence 555444443
No 239
>PRK08181 transposase; Validated
Probab=98.88 E-value=1.9e-09 Score=111.28 Aligned_cols=121 Identities=20% Similarity=0.282 Sum_probs=71.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchh--HHHHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ--AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 475 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~--~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r 475 (644)
.+++|+||||||||+|+.++++.+ |..+++++..++...-.. ....+...+.. ...+.+|+|||++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~---l~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK---LDKFDLLILDDLAYVTK-- 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH---HhcCCEEEEeccccccC--
Confidence 579999999999999999998765 677777776554321100 00112223332 23467999999998532
Q ss_pred ccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----------CCCHHHhccc---ceeEecCCCCHH
Q 006458 476 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG----------DLDSAVADRI---DEVLEFPLPGQE 534 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~----------~ld~al~~Rf---d~~i~~~~p~~~ 534 (644)
+......|..++...-.. ..+|+|||.+- .+..++++|+ ..+|.|.-.+..
T Consensus 182 -----~~~~~~~Lf~lin~R~~~---~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R 245 (269)
T PRK08181 182 -----DQAETSVLFELISARYER---RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245 (269)
T ss_pred -----CHHHHHHHHHHHHHHHhC---CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccch
Confidence 122333444444332121 25777888742 2345777877 345666655544
No 240
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.85 E-value=2.6e-08 Score=113.18 Aligned_cols=202 Identities=13% Similarity=0.088 Sum_probs=130.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeCCCC--CCCchhH-HHHH--------HHHHHHHHhcCCCeEEEEe
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDV--APLGPQA-VTKI--------HQLFDWAKKSKRGLLLFID 466 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~~~l--~~~g~~~-~~~l--------~~~f~~a~~~~~~~VL~ID 466 (644)
.++|||.|++|||||++++.|+..+.. ||+.+..+.- .-+|+.. ...+ ..++..| .++|||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A----h~GvL~lD 100 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA----DGGVLVLA 100 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec----cCCEEEec
Confidence 367999999999999999999999854 7766533221 1122211 1111 0111111 14699999
Q ss_pred ccchhhhccccCcCCHHHHHHHHHHHHHhCC-------------CCCCEEEEEEeCCC---CCCCHHHhcccceeEecCC
Q 006458 467 EADAFLCERNKTYMSEAQRSALNALLFRTGD-------------QSKDIVLALATNRP---GDLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 467 Eid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-------------~~~~viiI~ttN~~---~~ld~al~~Rfd~~i~~~~ 530 (644)
|+..| ...++..|++-++. .+.+|++|+|-|.. ..+++++++||+.+|.++.
T Consensus 101 e~n~~------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~ 168 (584)
T PRK13406 101 MAERL------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDG 168 (584)
T ss_pred CcccC------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCC
Confidence 99986 23456666666542 34678888874432 4589999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--CCC-cHHHHHHHHHHHHHHHh
Q 006458 531 PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGF-SGREIAKLMASVQAAVY 607 (644)
Q Consensus 531 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t--~G~-SgrdI~~L~~~~~aa~~ 607 (644)
|+..+..... . ....+... ...+.-..+++..+..++..+ -|. |.|--..++..+.+.+.
T Consensus 169 ~~~~~~~~~~--~--------------~~~~I~~A-R~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~Aa 231 (584)
T PRK13406 169 LALRDAREIP--I--------------DADDIAAA-RARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAA 231 (584)
T ss_pred CChHHhcccC--C--------------CHHHHHHH-HHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHH
Confidence 9876542100 0 00000000 001111237888777776654 365 78888888888888777
Q ss_pred CCCCCccCHHHHHHHHHHHHHhHHHHH
Q 006458 608 GSENCVLDPSLFREVVDYKVAEHQQRR 634 (644)
Q Consensus 608 ~~~~~~lt~~~~~~al~~~~~~~~~~~ 634 (644)
-.+...|+.+|+.+++.........+.
T Consensus 232 L~Gr~~V~~~dv~~Aa~lvL~hR~~~~ 258 (584)
T PRK13406 232 LAGRTAVEEEDLALAARLVLAPRATRL 258 (584)
T ss_pred HcCCCCCCHHHHHHHHHHHHHhhccCC
Confidence 777799999999999999887554433
No 241
>PRK06526 transposase; Provisional
Probab=98.80 E-value=2.1e-09 Score=110.32 Aligned_cols=123 Identities=24% Similarity=0.297 Sum_probs=69.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCch--hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP--QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 475 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~--~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r 475 (644)
.+++|+||||||||+++.+|+..+ |..++.++..++...-. ...+.+... ......+.||+|||++.+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~---l~~l~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAE---LVKLGRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHH---HHHhccCCEEEEcccccCCC--
Confidence 579999999999999999998875 55655554443321000 000111122 22234478999999998522
Q ss_pred ccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-----C-----CCHHHhccc---ceeEecCCCCHHHH
Q 006458 476 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-----D-----LDSAVADRI---DEVLEFPLPGQEER 536 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~-----~-----ld~al~~Rf---d~~i~~~~p~~~er 536 (644)
+......+..++...... ..+|+|||.+- . +-.++++|+ ..+|.|.-.+...+
T Consensus 174 -----~~~~~~~L~~li~~r~~~---~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R~~ 239 (254)
T PRK06526 174 -----EPEAANLFFQLVSSRYER---ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRLK 239 (254)
T ss_pred -----CHHHHHHHHHHHHHHHhc---CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcchh
Confidence 223334454554432211 24777888752 1 122556765 34566666655443
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.79 E-value=1.8e-08 Score=106.25 Aligned_cols=131 Identities=17% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCCccccChHHH-HHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC-Cchh
Q 006458 368 NGFGDVILHPSLQ-KRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP-LGPQ 442 (644)
Q Consensus 368 ~~~~~vig~~~~~-~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~-~g~~ 442 (644)
.+|+++...+.-. ..+........... .+...++++|+||||||||+|+.+||+.+ |.++..++..++.. +...
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~-~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYP-PGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 4677776544222 22222222222222 12244789999999999999999999997 67777776655422 1000
Q ss_pred -HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHH-HHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 443 -AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQR-SALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 443 -~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~-~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
....+...++. .....||+|||++.-. .++..+ .+|..++..- ...+..+|+|||.+
T Consensus 203 ~~~~~~~~~l~~---l~~~dlLiIDDiG~e~-------~s~~~~~~ll~~Il~~R--~~~~~~ti~TSNl~ 261 (306)
T PRK08939 203 ISDGSVKEKIDA---VKEAPVLMLDDIGAEQ-------MSSWVRDEVLGVILQYR--MQEELPTFFTSNFD 261 (306)
T ss_pred HhcCcHHHHHHH---hcCCCEEEEecCCCcc-------ccHHHHHHHHHHHHHHH--HHCCCeEEEECCCC
Confidence 00112223332 3346799999998631 233333 3445444321 12345677899974
No 243
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.78 E-value=1.7e-09 Score=105.14 Aligned_cols=110 Identities=26% Similarity=0.346 Sum_probs=54.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCch--hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP--QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 475 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~--~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r 475 (644)
.|++|+||||||||++|.++++++ |.++.+++..++...-. .........+.... ...+|+|||+....
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~---~~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK---RVDLLILDDLGYEP--- 121 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---TSSCEEEETCTSS----
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc---cccEecccccceee---
Confidence 579999999999999999998875 78888887665522000 00011222333333 25799999998631
Q ss_pred ccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC----------CCCCHHHhcccc
Q 006458 476 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP----------GDLDSAVADRID 523 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~----------~~ld~al~~Rfd 523 (644)
.++.....+..++..--. +-.+|+|||.. ..+..++++|+-
T Consensus 122 ----~~~~~~~~l~~ii~~R~~---~~~tIiTSN~~~~~l~~~~~d~~~a~aildRl~ 172 (178)
T PF01695_consen 122 ----LSEWEAELLFEIIDERYE---RKPTIITSNLSPSELEEVLGDRALAEAILDRLL 172 (178)
T ss_dssp ------HHHHHCTHHHHHHHHH---T-EEEEEESS-HHHHHT----------------
T ss_pred ----ecccccccchhhhhHhhc---ccCeEeeCCCchhhHhhcccccccccccccccc
Confidence 122233333333332211 22466799963 134456666663
No 244
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.77 E-value=9.6e-08 Score=99.13 Aligned_cols=138 Identities=21% Similarity=0.345 Sum_probs=81.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCC-eE--EEeCCCCCCCchhHHHHHHHHHHHHHh----------cCCCeEEEEecc
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLD-YA--LMTGGDVAPLGPQAVTKIHQLFDWAKK----------SKRGLLLFIDEA 468 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~-~~--~i~~~~l~~~g~~~~~~l~~~f~~a~~----------~~~~~VL~IDEi 468 (644)
++||+||+|||||++++.+-..+... ++ .++++.. .....+..+++.... .++.+|+||||+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~-----Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ-----TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT-----HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC-----CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEeccc
Confidence 49999999999999999877666433 22 3333221 111222222211111 112369999999
Q ss_pred chhhhccccCcCCHHHHHHHHHHHHHhC--C-------CCCCEEEEEEeCCCC---CCCHHHhcccceeEecCCCCHHHH
Q 006458 469 DAFLCERNKTYMSEAQRSALNALLFRTG--D-------QSKDIVLALATNRPG---DLDSAVADRIDEVLEFPLPGQEER 536 (644)
Q Consensus 469 d~l~~~r~~~~~~~~~~~~l~~lL~~~~--~-------~~~~viiI~ttN~~~---~ld~al~~Rfd~~i~~~~p~~~er 536 (644)
..-..+. .+ .....+.|..++..-+ + .-.++.+|+++|.+. .+++.|++.| .++.++.|+.+..
T Consensus 110 N~p~~d~--yg-tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~sl 185 (272)
T PF12775_consen 110 NMPQPDK--YG-TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSDESL 185 (272)
T ss_dssp T-S---T--TS---HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TCCHH
T ss_pred CCCCCCC--CC-CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCChHHH
Confidence 8643222 11 1223455666665432 1 113688899888643 4788999999 8999999999999
Q ss_pred HHHHHHHHHHHh
Q 006458 537 FKLLKLYLDKYI 548 (644)
Q Consensus 537 ~~Il~~~l~~~~ 548 (644)
..|+..++..+.
T Consensus 186 ~~If~~il~~~l 197 (272)
T PF12775_consen 186 NTIFSSILQSHL 197 (272)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhc
Confidence 999999987754
No 245
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.76 E-value=1.6e-08 Score=94.12 Aligned_cols=126 Identities=24% Similarity=0.406 Sum_probs=76.5
Q ss_pred ccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC---CeEEEeCCCCCCCchhHHHHHHHH
Q 006458 374 ILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---DYALMTGGDVAPLGPQAVTKIHQL 450 (644)
Q Consensus 374 ig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~---~~~~i~~~~l~~~g~~~~~~l~~~ 450 (644)
||.....+.+..-+..... .+. +|||+|+|||||+++|+.|....+. +|+.++|..+. .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~---~~~---pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~ 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK---SSS---PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AEL 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC---SSS----EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHH
T ss_pred CCCCHHHHHHHHHHHHHhC---CCC---cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHH
Confidence 3445555555443333332 222 3999999999999999999888753 55656655433 223
Q ss_pred HHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-------CCCCHHHhcccc
Q 006458 451 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-------GDLDSAVADRID 523 (644)
Q Consensus 451 f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~-------~~ld~al~~Rfd 523 (644)
++.+ .++.|||+|+|.| +...+..|..++...+ ..++.+|++|..+ ..+++.|..||.
T Consensus 65 l~~a----~~gtL~l~~i~~L---------~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 65 LEQA----KGGTLYLKNIDRL---------SPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp HHHC----TTSEEEEECGCCS----------HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred HHHc----CCCEEEECChHHC---------CHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 3333 3779999999998 4455666666665543 5566777776542 246777887874
Q ss_pred -eeEecCC
Q 006458 524 -EVLEFPL 530 (644)
Q Consensus 524 -~~i~~~~ 530 (644)
..|.+|+
T Consensus 130 ~~~i~lPp 137 (138)
T PF14532_consen 130 QLEIHLPP 137 (138)
T ss_dssp TCEEEE--
T ss_pred CCEEeCCC
Confidence 4445543
No 246
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.75 E-value=1.5e-07 Score=104.46 Aligned_cols=187 Identities=19% Similarity=0.220 Sum_probs=112.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHHHHHH----HHH--------HHHhcCCCeEEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQ----LFD--------WAKKSKRGLLLFI 465 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~~l~~----~f~--------~a~~~~~~~VL~I 465 (644)
..++++|.+||||+++++++.... +.+|+.++|+.+... .....+.. .|. +.. ...+++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~--~~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES--LLESELFGHEKGAFTGADKRREGRFV-EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH--HHHHHhcCCCCCCcCCCCcCCCCcee-ECCCCEEEE
Confidence 359999999999999999997765 478999999876421 00000000 000 011 123678999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCCEEEEEEeCCC-------CCCCHHHhcccceeEecCC
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~viiI~ttN~~-------~~ld~al~~Rfd~~i~~~~ 530 (644)
||++.| +...+..+..++..-. . ...++.||+||+.. ..+.+.|..|+ ..+.+..
T Consensus 240 dei~~l---------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ 309 (441)
T PRK10365 240 DEIGDI---------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEV 309 (441)
T ss_pred eccccC---------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecC
Confidence 999998 3344444444443211 0 12367788887653 35667777777 4566666
Q ss_pred CCHHHH----HHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 006458 531 PGQEER----FKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV 606 (644)
Q Consensus 531 p~~~er----~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~ 606 (644)
|...+| ..+++.++.++.... ......++++.+..|..+...-+.++|.+++..+ +
T Consensus 310 ppLreR~~Di~~l~~~~l~~~~~~~-----------------~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~---~ 369 (441)
T PRK10365 310 PSLRQRREDIPLLAGHFLQRFAERN-----------------RKAVKGFTPQAMDLLIHYDWPGNIRELENAVERA---V 369 (441)
T ss_pred CChhhcchhHHHHHHHHHHHHHHHh-----------------CCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHH---H
Confidence 666554 456666665543211 1112248899999999887555667777776532 2
Q ss_pred hCCCCCccCHHHHH
Q 006458 607 YGSENCVLDPSLFR 620 (644)
Q Consensus 607 ~~~~~~~lt~~~~~ 620 (644)
....+..|+.+++.
T Consensus 370 ~~~~~~~i~~~~l~ 383 (441)
T PRK10365 370 VLLTGEYISERELP 383 (441)
T ss_pred HhCCCCccchHhCc
Confidence 22344566666654
No 247
>PRK06921 hypothetical protein; Provisional
Probab=98.75 E-value=5.5e-08 Score=100.66 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=67.2
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccch-hhhc
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA-FLCE 474 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~-l~~~ 474 (644)
..+++|+||||||||+|+.+||+.+ |..+++++..++..............+ .......||+|||++. +.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~---~~~~~~dlLiIDDl~~~~~g- 192 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKL---NRMKKVEVLFIDDLFKPVNG- 192 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHH---HHhcCCCEEEEeccccccCC-
Confidence 4679999999999999999999986 566667765433211111111111111 2233468999999943 111
Q ss_pred cccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-C---CCCHHHhccc-----ceeEecCCCC
Q 006458 475 RNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-G---DLDSAVADRI-----DEVLEFPLPG 532 (644)
Q Consensus 475 r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~-~---~ld~al~~Rf-----d~~i~~~~p~ 532 (644)
....++.....|..++...-... ..+|+|||.+ . .+++.+.+|+ +.+|.|+-.+
T Consensus 193 --~e~~t~~~~~~lf~iin~R~~~~--k~tIitsn~~~~el~~~~~~l~sRi~~r~~~~~i~~~g~s 255 (266)
T PRK06921 193 --KPRATEWQIEQMYSVLNYRYLNH--KPILISSELTIDELLDIDEALGSRIVEMCKDYLVIIKGDS 255 (266)
T ss_pred --CccCCHHHHHHHHHHHHHHHHCC--CCEEEECCCCHHHHhhhhhHHHHHHHHhccCeEEEecCcc
Confidence 11112333334444444332122 2356788863 2 2345666653 3355665553
No 248
>PF13173 AAA_14: AAA domain
Probab=98.71 E-value=4.7e-08 Score=89.79 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=74.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC--CCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~--~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
.++|+||+|||||++++.+++.+. ..++++++.+.......... +...+.... .....+|||||++.+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~iDEiq~~-------- 73 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELI-KPGKKYIFIDEIQYL-------- 73 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhh-ccCCcEEEEehhhhh--------
Confidence 489999999999999999998876 77888887765432111111 222222221 124679999999986
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----CCCHHHhcccceeEecCCCCHHHH
Q 006458 480 MSEAQRSALNALLFRTGDQSKDIVLALATNRPG----DLDSAVADRIDEVLEFPLPGQEER 536 (644)
Q Consensus 480 ~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~----~ld~al~~Rfd~~i~~~~p~~~er 536 (644)
+.....+..+.. ...++-||+|+.... .....+..|+ ..+++.+++..|.
T Consensus 74 --~~~~~~lk~l~d----~~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 --PDWEDALKFLVD----NGPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred --ccHHHHHHHHHH----hccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHHh
Confidence 123334444443 224566666654433 3344566687 6888888887763
No 249
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.71 E-value=2.8e-07 Score=95.77 Aligned_cols=203 Identities=20% Similarity=0.279 Sum_probs=133.8
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCch
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP 441 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~ 441 (644)
.+..+|+.+|+.....+.+..-....+- ...| +||.|.+||||-++|++.-... ..||+-+||..+.....
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~Am---lDAP---LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAM---LDAP---LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA 271 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhc---cCCC---eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence 4556799999877766666433322222 2234 9999999999999999875554 58999999988743111
Q ss_pred hH--------HHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH-----hC---CCCCCEEEE
Q 006458 442 QA--------VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-----TG---DQSKDIVLA 505 (644)
Q Consensus 442 ~~--------~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~-----~~---~~~~~viiI 505 (644)
++ ...-..+|..+. ++-+|||||..+ ++..+..+..||+. ++ +.+-+|.||
T Consensus 272 EsElFG~apg~~gk~GffE~An----gGTVlLDeIgEm---------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 272 ESELFGHAPGDEGKKGFFEQAN----GGTVLLDEIGEM---------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred HHHHhcCCCCCCCccchhhhcc----CCeEEeehhhhc---------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEE
Confidence 10 122234666654 567999999987 66778888888764 22 234579999
Q ss_pred EEeCCC-------CCCCHHHhcccceeEecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 506 LATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 506 ~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
+||..+ ..+-..+.-|+ .++.+..|...+|.. +.+.++.+...+ .++..+.
T Consensus 339 catq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~e-----------------lg~p~pk 400 (511)
T COG3283 339 CATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDE-----------------LGVPRPK 400 (511)
T ss_pred ecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHH-----------------hCCCCCc
Confidence 998753 35566677788 778888887766654 444444443221 2233345
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 006458 575 LTDDILMEAAAKTEGFSGREIAKLMASVQA 604 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~SgrdI~~L~~~~~a 604 (644)
++++.+..|-++-.--+.|++.+.+-.+..
T Consensus 401 l~~~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 401 LAADLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred cCHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 888999999888665577888887743333
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.69 E-value=6.4e-08 Score=99.43 Aligned_cols=96 Identities=23% Similarity=0.332 Sum_probs=56.8
Q ss_pred CCccccChHHH-HHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHH
Q 006458 370 FGDVILHPSLQ-KRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 370 ~~~vig~~~~~-~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~ 445 (644)
+.++-+.+... ..+..+........ ...|++||||||||||+|+-+|++.+ |.+++.++..++..--.....
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~~~~~----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLVEFFE----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cccccCCcchhHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 34444444433 33344443333333 33679999999999999999999886 778888877665331100000
Q ss_pred --HHHHHHHHHHhcCCCeEEEEeccchh
Q 006458 446 --KIHQLFDWAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 446 --~l~~~f~~a~~~~~~~VL~IDEid~l 471 (644)
....-+ ........||||||+...
T Consensus 154 ~~~~~~~l--~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 154 EGRLEEKL--LRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCchHHHH--HHHhhcCCEEEEecccCc
Confidence 111111 111334789999999984
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.68 E-value=1.3e-08 Score=108.56 Aligned_cols=245 Identities=18% Similarity=0.154 Sum_probs=128.6
Q ss_pred CCccccChHHHHHHH-HHHHHhhchhcc---CCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC--C----
Q 006458 370 FGDVILHPSLQKRIR-QLSGATANTKAH---NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--L---- 439 (644)
Q Consensus 370 ~~~vig~~~~~~~l~-~l~~~~~~~~~~---~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~--~---- 439 (644)
.-.|+|++.++..|- .+.......... .+..-|+||+|.||||||.|.+.+++.....+ +++|..... +
T Consensus 23 aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 23 APSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp SSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred CCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 455778888777772 222222111111 12334899999999999999998866544433 333322111 0
Q ss_pred chh---HHHHHH-HHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh----CC------CCCCEEEE
Q 006458 440 GPQ---AVTKIH-QLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----GD------QSKDIVLA 505 (644)
Q Consensus 440 g~~---~~~~l~-~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~----~~------~~~~viiI 505 (644)
..+ ....+. ..+ . ...++|++|||+|++- ...+..+...+..- .. .+.++.|+
T Consensus 102 ~~d~~~~~~~leaGal---v-lad~GiccIDe~dk~~---------~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGAL---V-LADGGICCIDEFDKMK---------EDDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp CCCGGTSSECEEE-HH---H-HCTTSEEEECTTTT-----------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred ccccccceeEEeCCch---h-cccCceeeeccccccc---------chHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 000 000000 011 1 1236799999999972 23334444443321 01 23467888
Q ss_pred EEeCCCC-------------CCCHHHhcccceeEec-CCCCHHHHHHHHHHHHHHHhhhhC-----CCC--CCcchhhhh
Q 006458 506 LATNRPG-------------DLDSAVADRIDEVLEF-PLPGQEERFKLLKLYLDKYIAQAG-----SRK--PGLVHRLFK 564 (644)
Q Consensus 506 ~ttN~~~-------------~ld~al~~Rfd~~i~~-~~p~~~er~~Il~~~l~~~~~~~~-----~~~--~~~~~~~~~ 564 (644)
+++|... .+++.|++|||.++.+ +.|+.+.=..|..+.++.+..... ... ..+-..+++
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr 248 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLR 248 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCH
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHH
Confidence 9998654 4778999999988765 677766666666666655432210 000 011122333
Q ss_pred hhh---hhhhccCCCHHHHHHHHHHcC-------------CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 565 SEQ---QKIEIKGLTDDILMEAAAKTE-------------GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 565 ~~~---~~~~~~~~~d~~l~~LA~~t~-------------G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
.+- +....+.++++..+.|...+. ..+.|.|..|++..++.+...-...++.+|+..|+.-...
T Consensus 249 ~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 249 KYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 331 112224588888888876642 3466888999998899888888899999999999987643
No 252
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=1.3e-06 Score=95.59 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=121.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe-CCCC---CCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT-GGDV---APL 439 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~-~~~l---~~~ 439 (644)
.+.+.+.+++-.+..-...|+..+... ....++.+.+-+||+||+|||||++++.|++++|..++.-+ +..+ ...
T Consensus 75 Ky~P~t~eeLAVHkkKI~eVk~WL~~~-~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~ 153 (634)
T KOG1970|consen 75 KYKPRTLEELAVHKKKISEVKQWLKQV-AEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENL 153 (634)
T ss_pred hcCcccHHHHhhhHHhHHHHHHHHHHH-HHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccc
Confidence 355667788877776667776655522 22233444467999999999999999999999998877654 1111 000
Q ss_pred -------chhHHHHH---HHHHHHHHh-----------cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCC
Q 006458 440 -------GPQAVTKI---HQLFDWAKK-----------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 498 (644)
Q Consensus 440 -------g~~~~~~l---~~~f~~a~~-----------~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~ 498 (644)
+......+ ......+.+ ...+.+|||||+-..+... .....+.+|. ++-..+
T Consensus 154 h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~-~y~s~g-- 226 (634)
T KOG1970|consen 154 HNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLR-LYVSIG-- 226 (634)
T ss_pred cccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHH-HHHhcC--
Confidence 10011111 112222211 1224589999997754321 1223444444 221122
Q ss_pred CCCEEEEEE-eCCCCCCCHHHh--------cccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhh
Q 006458 499 SKDIVLALA-TNRPGDLDSAVA--------DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQK 569 (644)
Q Consensus 499 ~~~viiI~t-tN~~~~ld~al~--------~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (644)
...+|||+| ++.++..++..+ -|+ ..|.|++-...-..+.|+.++.......+.
T Consensus 227 ~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~---------------- 289 (634)
T KOG1970|consen 227 RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSG---------------- 289 (634)
T ss_pred CCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccC----------------
Confidence 223555554 233333322211 277 788999999888888888888765432110
Q ss_pred hhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 006458 570 IEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV 606 (644)
Q Consensus 570 ~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~ 606 (644)
++ .-+...++.|+..+ ++||+..+.++|..+
T Consensus 290 ~k--~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 290 IK--VPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred Cc--CchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 11 12345777777665 459999999999884
No 253
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.65 E-value=4.4e-07 Score=92.64 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=104.4
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCC--CCCC--Cch
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGG--DVAP--LGP 441 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~--~l~~--~g~ 441 (644)
..+.||.-+++.|-..+........+..| -.+=|||+|||||.++++.||+.+ ..+++..-.+ .+.. ...
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie 160 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE 160 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHH
Confidence 34679998888886655554444444444 456789999999999999999986 2344332211 1111 111
Q ss_pred hHHHHHHH-HHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh----CCCCCCEEEEEEeCCCC----
Q 006458 442 QAVTKIHQ-LFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----GDQSKDIVLALATNRPG---- 512 (644)
Q Consensus 442 ~~~~~l~~-~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~----~~~~~~viiI~ttN~~~---- 512 (644)
.....+.. +.+.+..+. -+|+++||+|+| .+..-+++..||+.. +.++.+.|+|+-+|...
T Consensus 161 ~Yk~eL~~~v~~~v~~C~-rslFIFDE~DKm---------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~ 230 (344)
T KOG2170|consen 161 DYKEELKNRVRGTVQACQ-RSLFIFDEVDKL---------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIA 230 (344)
T ss_pred HHHHHHHHHHHHHHHhcC-CceEEechhhhc---------CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHH
Confidence 11112222 222233333 579999999998 456677888888743 35677899999888422
Q ss_pred -------------------CCCHH-----------------Hh--cccceeEecCCCCHHHHHHHHHHHHHHH
Q 006458 513 -------------------DLDSA-----------------VA--DRIDEVLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 513 -------------------~ld~a-----------------l~--~Rfd~~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
.+.+. ++ .++|..|.|.+.+.......++..+.+.
T Consensus 231 ~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~r 303 (344)
T KOG2170|consen 231 RIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKR 303 (344)
T ss_pred HHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhc
Confidence 11111 11 1678888999998888888888887664
No 254
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.65 E-value=5.8e-07 Score=90.95 Aligned_cols=146 Identities=17% Similarity=0.226 Sum_probs=83.3
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHH
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQL 450 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~ 450 (644)
..+|.-|-.......+..+.... .+-.++||+|||||++++.||+.+|.+++.++|++-..+ ..+..+
T Consensus 10 ~rlv~Tplt~r~~~~l~~al~~~-------~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~-----~~l~ri 77 (231)
T PF12774_consen 10 PRLVITPLTDRCFLTLTQALSLN-------LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY-----QSLSRI 77 (231)
T ss_dssp ------HHHHHHHHHHHHHHCTT-------TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H-----HHHHHH
T ss_pred CCceechHHHHHHHHHHHHhccC-------CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH-----HHHHHH
Confidence 34555565555555555554221 235789999999999999999999999999999885432 244456
Q ss_pred HHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH----hCC-------------CCCCEEEEEEeCC---
Q 006458 451 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR----TGD-------------QSKDIVLALATNR--- 510 (644)
Q Consensus 451 f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~----~~~-------------~~~~viiI~ttN~--- 510 (644)
|.-+... |+.++|||++.|- ...-.++...+.. +.. -..++-|++|.|.
T Consensus 78 l~G~~~~--GaW~cfdefnrl~---------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~ 146 (231)
T PF12774_consen 78 LKGLAQS--GAWLCFDEFNRLS---------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA 146 (231)
T ss_dssp HHHHHHH--T-EEEEETCCCSS---------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC
T ss_pred HHHHhhc--Cchhhhhhhhhhh---------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccC
Confidence 6555544 7899999999972 2222222222222 111 1234556667773
Q ss_pred -CCCCCHHHhcccceeEecCCCCHHHHHHHH
Q 006458 511 -PGDLDSAVADRIDEVLEFPLPGQEERFKLL 540 (644)
Q Consensus 511 -~~~ld~al~~Rfd~~i~~~~p~~~er~~Il 540 (644)
...+++.++.-| +.|.+..||.....+++
T Consensus 147 gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 147 GRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp CC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred CcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 347888888888 99999999987766654
No 255
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.63 E-value=1.3e-06 Score=87.69 Aligned_cols=188 Identities=22% Similarity=0.227 Sum_probs=122.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCC---eEEEeCCCCCC------------------CchhHHHHHHHHHHHHHhcCCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAP------------------LGPQAVTKIHQLFDWAKKSKRG 460 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~---~~~i~~~~l~~------------------~g~~~~~~l~~~f~~a~~~~~~ 460 (644)
-+.++|+.|||||++++++...++.+ .++++...+.. +.......-+.+.....+..+|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 38999999999999999776666432 22333222211 0011122233444555566667
Q ss_pred eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC--CCCCC----HHHhcccceeEecCCCCHH
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR--PGDLD----SAVADRIDEVLEFPLPGQE 534 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~--~~~ld----~al~~Rfd~~i~~~~p~~~ 534 (644)
.++++||++.+. ...-..+..|.....+.++..-|++.... ...+- ..+-.||+..|++++.+.+
T Consensus 133 v~l~vdEah~L~---------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 133 VVLMVDEAHDLN---------DSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred eEEeehhHhhhC---------hhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 899999999873 24445566666555555555444443221 11111 1333499777999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCcc
Q 006458 535 ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 614 (644)
Q Consensus 535 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~l 614 (644)
+-...++..++.-.. ....++++.+..+...+.| -++-|..+|..+.-.+|..+...|
T Consensus 204 ~t~~yl~~~Le~a~~---------------------~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v 261 (269)
T COG3267 204 ETGLYLRHRLEGAGL---------------------PEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGV 261 (269)
T ss_pred HHHHHHHHHHhccCC---------------------CcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999998876311 1123789999999999999 588999999877777777777777
Q ss_pred CHHHHH
Q 006458 615 DPSLFR 620 (644)
Q Consensus 615 t~~~~~ 620 (644)
+...+.
T Consensus 262 ~~a~~~ 267 (269)
T COG3267 262 SEAEIK 267 (269)
T ss_pred chhhcc
Confidence 766543
No 256
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=98.58 E-value=0.00011 Score=75.12 Aligned_cols=149 Identities=20% Similarity=0.199 Sum_probs=105.8
Q ss_pred CCCCCCccCCCCCchhhHHH--HHHHHHhcCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006458 78 NDQPRTTSAGFDPEPLERGA--KLLREISASPNAKKAFEFMKKQEETKQTELAAKAAEYKAMQAQAENERQRVIYDEQRK 155 (644)
Q Consensus 78 ~~~~~~~~~~~d~~~ler~a--~a~~~l~~s~~a~~~~~~~~~~e~t~q~e~~~~~~~~~~~~~~~~~~~~~~~~ee~r~ 155 (644)
++.+++..++-...++...+ +|++.|..-.....| .+..|..+++| +++.+|+++..+++++...+.+.+..|.
T Consensus 14 ~~~~~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~A---k~afel~k~QE-~TkQ~E~~ak~~e~ea~~~q~~~e~~rv 89 (276)
T PF12037_consen 14 GSKPRNDNPRTTASGFDPEALERAAKALRELNSSPHA---KKAFELMKKQE-ETKQAELQAKIAEYEAAQAQAEIERQRV 89 (276)
T ss_pred CcCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcChhH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788899999998 999999999999998 88999999999 9999999999999999888888888777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006458 156 LAQHNAQTKSQMARYEDELARKRMQAENEYHRARNQEL--VKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERET 233 (644)
Q Consensus 156 ~~~~~~~~~~~~~~y~d~l~r~~~~~e~e~~~~~~~~~--~~~~~e~~~r~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 233 (644)
..+++.+.-++.++.+.+ +..|+++++.++.+.+-. ..++++...+|++.- ...+.+++.++++....++.+
T Consensus 90 ~~EE~Rkt~~~q~q~~~q--~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~----~rqE~~Rr~Te~~i~~~r~~t 163 (276)
T PF12037_consen 90 EAEERRKTLQQQTQQKQQ--RAQYEDELARKRYQDELEQQRRRNEELLKMQEESV----IRQEQMRRATEEQILAQRRQT 163 (276)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 655555544444443333 457888888777654322 112223344444332 245558888877766665555
Q ss_pred HHH
Q 006458 234 IRV 236 (644)
Q Consensus 234 ~~~ 236 (644)
+..
T Consensus 164 ~~~ 166 (276)
T PF12037_consen 164 EEE 166 (276)
T ss_pred HHH
Confidence 443
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.52 E-value=1.1e-06 Score=82.75 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=62.0
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC------------------------CchhHHHHHHHHHHHHH
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------------------------LGPQAVTKIHQLFDWAK 455 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~------------------------~g~~~~~~l~~~f~~a~ 455 (644)
++|+||||+|||+++..++... +.++++++...... .................
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 45666665432211 00111111122222333
Q ss_pred hcCCCeEEEEeccchhhhcccc--CcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 456 KSKRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l~~~r~~--~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
...++.+|+|||+..+...... ..........+..++..... .++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK--GGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc--CCceEEEEEecC
Confidence 3455889999999998654321 12233445566666655533 355555555443
No 258
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.52 E-value=5.9e-06 Score=89.29 Aligned_cols=198 Identities=19% Similarity=0.231 Sum_probs=100.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 480 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~ 480 (644)
.|+++.||||||||+++..|+...- ..+| .+.. .......+.. ........+++|+|||+..+.-.+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a----~~sG-~f~T-~a~Lf~~L~~--~~lg~v~~~DlLI~DEvgylp~~~----- 276 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVI----LISG-GTIT-VAKLFYNIST--RQIGLVGRWDVVAFDEVATLKFAK----- 276 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHH----HHcC-CcCc-HHHHHHHHHH--HHHhhhccCCEEEEEcCCCCcCCc-----
Confidence 5799999999999999999877610 1111 1111 1111111111 222233457899999999863221
Q ss_pred CHHHHHHHHHHHHHhCC---------CCCC--EEEEEEeCC---------------CCC-CCHHHhcccceeE---ecCC
Q 006458 481 SEAQRSALNALLFRTGD---------QSKD--IVLALATNR---------------PGD-LDSAVADRIDEVL---EFPL 530 (644)
Q Consensus 481 ~~~~~~~l~~lL~~~~~---------~~~~--viiI~ttN~---------------~~~-ld~al~~Rfd~~i---~~~~ 530 (644)
....+..+...+.. ...+ +++++-.|. |.. -|.+|++||+-.| ++|.
T Consensus 277 ---~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDRiH~yiPGWeipk 353 (449)
T TIGR02688 277 ---PKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDRIHGYLPGWEIPK 353 (449)
T ss_pred ---hHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHHhhhccCCCCcCcc
Confidence 12233333333321 1123 444443332 111 1568888884333 4444
Q ss_pred CCHHHH---HHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHH---H
Q 006458 531 PGQEER---FKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQ---A 604 (644)
Q Consensus 531 p~~~er---~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~---a 604 (644)
...+.. .-++--||...... +.+ . +++ ..++.......+++.||...+-..+- -
T Consensus 354 ~~~e~~t~~yGl~~DylsE~l~~-----------lR~-----~---~~~-~~~~~~~~l~~~~~~RD~~aV~kt~SgllK 413 (449)
T TIGR02688 354 IRKEMFSNGYGFVVDYFAEALRE-----------LRE-----R---EYA-DIVDRHFSLSPNLNTRDVIAVKKTFSGLMK 413 (449)
T ss_pred CCHHHcccCCcchHHHHHHHHHH-----------HHh-----h---HHH-HhhhhheecCCCcchhhHHHHHHHHHHHHH
Confidence 444321 12233333322111 000 0 011 23444555567889999877664443 3
Q ss_pred HHhCCCCCccCHHHHHHHHHHHHHhHHHHHHh
Q 006458 605 AVYGSENCVLDPSLFREVVDYKVAEHQQRRKL 636 (644)
Q Consensus 605 a~~~~~~~~lt~~~~~~al~~~~~~~~~~~~~ 636 (644)
..| .+..+|.++++.+++.++-..++-..+
T Consensus 414 LL~--P~~~~~~ee~~~~l~~Ale~RrrVkeq 443 (449)
T TIGR02688 414 ILF--PHGTITKEEFTECLEPALEGRQRVKDQ 443 (449)
T ss_pred HhC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344 447899999999998887665443333
No 259
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=7.9e-07 Score=84.17 Aligned_cols=140 Identities=19% Similarity=0.323 Sum_probs=79.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC--------CC-eEEEeCCCCCCCc-------------hhHHHHHHHHHHHHHhcCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG--------LD-YALMTGGDVAPLG-------------PQAVTKIHQLFDWAKKSKR 459 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~--------~~-~~~i~~~~l~~~g-------------~~~~~~l~~~f~~a~~~~~ 459 (644)
-++|+|+||+|||++++.++..+. .+ ++.+.+....... ......+...+.......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998762 12 2233333322211 0111112222333444555
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccc--eeEecCCCCHHHHH
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRID--EVLEFPLPGQEERF 537 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd--~~i~~~~p~~~er~ 537 (644)
..+|+||.+|.+...... .........+..++.. ....++.+|+||+... ... +.+.+. ..+.++..+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRA-FPD-LRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCCh-HHH-HHHhcCCCcEEEECCCCHHHHH
Confidence 789999999998543221 0011222334444432 1345666776665422 211 333332 56899999999999
Q ss_pred HHHHHHHHH
Q 006458 538 KLLKLYLDK 546 (644)
Q Consensus 538 ~Il~~~l~~ 546 (644)
.+++.++..
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999998753
No 260
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.51 E-value=5.9e-07 Score=106.56 Aligned_cols=158 Identities=23% Similarity=0.278 Sum_probs=111.4
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-------Cchh
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-------LGPQ 442 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-------~g~~ 442 (644)
-...|.-|-+.+.+..++++.... .-| +||.||+.+|||+.+..||+..|+.|+++|..+... +..+
T Consensus 864 q~hyIiTPfVqkn~ln~~Ra~s~~---~fP---~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd 937 (4600)
T COG5271 864 QEHYIITPFVQKNYLNTMRAASLS---NFP---LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD 937 (4600)
T ss_pred cceeEecHHHHHHHHHHHHHHhhc---CCc---EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec
Confidence 455777787777665655544322 223 999999999999999999999999999998665421 1111
Q ss_pred ---HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-----------CCCCCEEEEEEe
Q 006458 443 ---AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----------DQSKDIVLALAT 508 (644)
Q Consensus 443 ---~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----------~~~~~viiI~tt 508 (644)
....-..++-.|.+ +|..|+|||..-- ....-.+||.||..-. ..+.++++++|-
T Consensus 938 d~G~lsFkEGvLVeAlR--~GyWIVLDELNLA---------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ 1006 (4600)
T COG5271 938 DDGSLSFKEGVLVEALR--RGYWIVLDELNLA---------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ 1006 (4600)
T ss_pred CCCceeeehhHHHHHHh--cCcEEEeeccccC---------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec
Confidence 01111234444543 3679999999853 2356677888876422 256789998898
Q ss_pred CCCC------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHH
Q 006458 509 NRPG------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLD 545 (644)
Q Consensus 509 N~~~------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~ 545 (644)
|.|. .+..+|++|| ..++|..-..++...||...+.
T Consensus 1007 Nppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1007 NPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred CCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHHHhccCc
Confidence 9875 5788999999 8889988888999888876653
No 261
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=7.1e-08 Score=99.49 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=44.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC-Cch-hHHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP-LGP-QAVTKIHQLFDWAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~-~g~-~~~~~l~~~f~~a~~~~~~~VL~IDEid~l 471 (644)
.+++|+||||||||+|+.+|+..+ |..+.++++.++.. +.. .....+..++... ...+++|+|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~--~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG--VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH--hcCCCEEEEcccccC
Confidence 469999999999999999997664 66777776554431 110 0011222333332 234679999999875
No 262
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=3.8e-07 Score=83.34 Aligned_cols=95 Identities=27% Similarity=0.347 Sum_probs=56.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc--------CCCeEEEeCCCCCC----------------CchhHHHH-HHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS--------GLDYALMTGGDVAP----------------LGPQAVTK-IHQLFDWAK 455 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l--------~~~~~~i~~~~l~~----------------~g~~~~~~-l~~~f~~a~ 455 (644)
+.++++||||+|||++++.+++.+ ..+++.+++..... ........ ...+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999987 66777776433221 11112222 233333444
Q ss_pred hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Q 006458 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN 509 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN 509 (644)
... ..+|+|||+|.|. ....++.+....+ ..++.||++.+
T Consensus 85 ~~~-~~~lviDe~~~l~-----------~~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 85 RRR-VVLLVIDEADHLF-----------SDEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp HCT-EEEEEEETTHHHH-----------THHHHHHHHHHTC--SCBEEEEEEES
T ss_pred hcC-CeEEEEeChHhcC-----------CHHHHHHHHHHHh--CCCCeEEEEEC
Confidence 333 4699999999973 1345555544444 55555655544
No 263
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.43 E-value=4.3e-06 Score=99.65 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=95.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----Cchh-------HHHHHHHHHHHHHhcCCCeEEEEeccc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----LGPQ-------AVTKIHQLFDWAKKSKRGLLLFIDEAD 469 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----~g~~-------~~~~l~~~f~~a~~~~~~~VL~IDEid 469 (644)
+++||-|.||+|||+++.+||+..|..++++|.++-.. +|.+ ...-...-|-.+ ++.|..|+|||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a--mr~G~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA--MRDGGWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH--hhcCCEEEeehhh
Confidence 34999999999999999999999999999998665311 1111 011111222223 3447899999998
Q ss_pred hhhhccccCcCCHHHHHHHHHHHHHhC-----------CCCCCEEEEEEeCCC------CCCCHHHhcccceeEecCCCC
Q 006458 470 AFLCERNKTYMSEAQRSALNALLFRTG-----------DQSKDIVLALATNRP------GDLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 470 ~l~~~r~~~~~~~~~~~~l~~lL~~~~-----------~~~~~viiI~ttN~~------~~ld~al~~Rfd~~i~~~~p~ 532 (644)
-- +...-.-||..|..-. +.+.|+.|++|-|.. ..++..|++|| .+|+++.++
T Consensus 1622 La---------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt 1691 (4600)
T COG5271 1622 LA---------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLT 1691 (4600)
T ss_pred hh---------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccc
Confidence 63 3344556777776422 256788888887763 36899999999 899999999
Q ss_pred HHHHHHHHHHHHHH
Q 006458 533 QEERFKLLKLYLDK 546 (644)
Q Consensus 533 ~~er~~Il~~~l~~ 546 (644)
.++...|....+..
T Consensus 1692 ~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1692 TDDITHIANKMYPQ 1705 (4600)
T ss_pred cchHHHHHHhhCCc
Confidence 99988888877653
No 264
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=8.2e-06 Score=81.76 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=97.0
Q ss_pred ccEEEecCCC-CChHHHHHHHHHHcC---------CCeEEEeCCCC-----CCCchhHHHHHHHHHHHHHh---cCCCeE
Q 006458 401 RNMLFYGPPG-TGKTMAARELARKSG---------LDYALMTGGDV-----APLGPQAVTKIHQLFDWAKK---SKRGLL 462 (644)
Q Consensus 401 ~~iLL~GppG-tGKT~lAkaLA~~l~---------~~~~~i~~~~l-----~~~g~~~~~~l~~~f~~a~~---~~~~~V 462 (644)
..+||.|..+ +||..++..++..+. -+++.+....- ...+ ...++++...+.. ..+..|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~---IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNIS---IEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCccc---HHHHHHHHHHHhhCcccCCcEE
Confidence 4599999998 999999998887762 23444432211 1123 3444555444432 335679
Q ss_pred EEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHH
Q 006458 463 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKL 542 (644)
Q Consensus 463 L~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~ 542 (644)
++||++|.| .....|.||+.+++.+.+++||++|+.+..+.|.++||| ..+.|+.|....-.+++..
T Consensus 93 iII~~ae~m------------t~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 93 AIIYSAELM------------NLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYSQ 159 (263)
T ss_pred EEEechHHh------------CHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHHH
Confidence 999999997 356899999999999999999999999999999999999 9999999998777666665
Q ss_pred HHH
Q 006458 543 YLD 545 (644)
Q Consensus 543 ~l~ 545 (644)
++.
T Consensus 160 ~~~ 162 (263)
T PRK06581 160 FIQ 162 (263)
T ss_pred hcc
Confidence 543
No 265
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.36 E-value=4e-06 Score=87.29 Aligned_cols=163 Identities=20% Similarity=0.164 Sum_probs=85.6
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHH--cCCCe---EEEeCCCCCC--------------------CchhHHHHHHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARK--SGLDY---ALMTGGDVAP--------------------LGPQAVTKIHQLFD 452 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~--l~~~~---~~i~~~~l~~--------------------~g~~~~~~l~~~f~ 452 (644)
.+.+.|.|+|++|+|||++|..+++. ....| +.++.+.... ...........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34467999999999999999999977 43322 2333222111 01111222233333
Q ss_pred HHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCC
Q 006458 453 WAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 453 ~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~ 532 (644)
... ..+++|+||+++.. . .+..+...+.....+..||+||....... .+- .-+..+.++.++
T Consensus 97 ~L~--~~~~LlVlDdv~~~-----------~---~~~~l~~~~~~~~~~~kilvTTR~~~v~~-~~~-~~~~~~~l~~L~ 158 (287)
T PF00931_consen 97 LLK--DKRCLLVLDDVWDE-----------E---DLEELREPLPSFSSGSKILVTTRDRSVAG-SLG-GTDKVIELEPLS 158 (287)
T ss_dssp HHC--CTSEEEEEEEE-SH-----------H---HH-------HCHHSS-EEEEEESCGGGGT-THH-SCEEEEECSS--
T ss_pred hhc--cccceeeeeeeccc-----------c---ccccccccccccccccccccccccccccc-ccc-cccccccccccc
Confidence 322 23799999999873 1 23223322222334567777887643211 111 114789999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHH
Q 006458 533 QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 533 ~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
.++-..++..+...... ......++....|+..|.| .+-.|..+..
T Consensus 159 ~~ea~~L~~~~~~~~~~---------------------~~~~~~~~~~~~i~~~c~g-lPLal~~~a~ 204 (287)
T PF00931_consen 159 EEEALELFKKRAGRKES---------------------ESPEDLEDLAKEIVEKCGG-LPLALKLIAS 204 (287)
T ss_dssp HHHHHHHHHHHHTSHS-------------------------TTSCTHHHHHHHHTTT--HHHHHHHHH
T ss_pred ccccccccccccccccc---------------------ccccccccccccccccccc-cccccccccc
Confidence 99999998888543210 0001223467888888866 4545555443
No 266
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.36 E-value=1e-06 Score=103.52 Aligned_cols=163 Identities=22% Similarity=0.269 Sum_probs=110.5
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHH---------HHHHHH---HHHHhc-CCCeEEEEeccc
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVT---------KIHQLF---DWAKKS-KRGLLLFIDEAD 469 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~---------~l~~~f---~~a~~~-~~~~VL~IDEid 469 (644)
+|++||||+|||+.+..+|..+|..++.+|.++... +..... .+...+ ...... ....||++||+|
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS-k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS-KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCcccccc-ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 699999999999999999999999999999887642 111111 111111 111111 223499999999
Q ss_pred hhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhh
Q 006458 470 AFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIA 549 (644)
Q Consensus 470 ~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~ 549 (644)
-++. ..+..+..+...+. ....-+|++||.........+.|.+..++|+.|+...+..-+..++.....
T Consensus 439 ~~~~---------~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ 507 (871)
T KOG1968|consen 439 GMFG---------EDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGI 507 (871)
T ss_pred cccc---------hhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccce
Confidence 9854 22233333333333 345668889998877777666776689999999999988777777654322
Q ss_pred hhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 006458 550 QAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAA 605 (644)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa 605 (644)
. +++..++.+...+ +.||++.+..++..
T Consensus 508 k------------------------i~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 508 K------------------------ISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred e------------------------cCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 1 7888999999886 45777777555554
No 267
>PHA00729 NTP-binding motif containing protein
Probab=98.33 E-value=1.2e-06 Score=87.79 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD 427 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~ 427 (644)
.+++|+|+||||||++|.+|++.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999997633
No 268
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.30 E-value=4.2e-06 Score=92.34 Aligned_cols=223 Identities=16% Similarity=0.131 Sum_probs=112.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC-CCC---------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-VAP---------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~-l~~---------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l 471 (644)
|+||+|.|||||+-+.|.+++.....++...-+. -.+ ++.++ .+.. -|......+|.+|||+|++
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEW--TLEa---GALVLADkGvClIDEFDKM 558 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREW--TLEA---GALVLADKGVCLIDEFDKM 558 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCcccee--eecc---CeEEEccCceEEeehhhhh
Confidence 7999999999999999999998766555432111 100 11110 0000 0111222568899999998
Q ss_pred hhccccCcCCHHHHHHHHHHHH--HhCCCCCCEEEEEEeCCCC-------------CCCHHHhcccceeEecCC---CCH
Q 006458 472 LCERNKTYMSEAQRSALNALLF--RTGDQSKDIVLALATNRPG-------------DLDSAVADRIDEVLEFPL---PGQ 533 (644)
Q Consensus 472 ~~~r~~~~~~~~~~~~l~~lL~--~~~~~~~~viiI~ttN~~~-------------~ld~al~~Rfd~~i~~~~---p~~ 533 (644)
-.... ...++++.+.--.+-+ ..-.....+.+|+|+|... .+..++++|||..+.+.. |-.
T Consensus 559 ndqDR-tSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~ 637 (854)
T KOG0477|consen 559 NDQDR-TSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQ 637 (854)
T ss_pred ccccc-chHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchh
Confidence 43211 1112221110000000 0011234577888888622 567789999998776643 222
Q ss_pred HHHH--HHHHHHHHHHhhhhCCCC----------CCcchhhhhhhhh----hhh--ccCCCHHHHHHHHH----Hc--CC
Q 006458 534 EERF--KLLKLYLDKYIAQAGSRK----------PGLVHRLFKSEQQ----KIE--IKGLTDDILMEAAA----KT--EG 589 (644)
Q Consensus 534 ~er~--~Il~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~----~~~--~~~~~d~~l~~LA~----~t--~G 589 (644)
+++. -++..+...........+ ....+.+++++-. ++. +..++.+-+..+-. .+ .|
T Consensus 638 De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tG 717 (854)
T KOG0477|consen 638 DEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATG 717 (854)
T ss_pred HHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccC
Confidence 3322 234444433221100000 1133445555421 111 22233332222211 11 12
Q ss_pred ---CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 590 ---FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 590 ---~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
.+.|.|..++....+-+...-...++.+++..++...+..+
T Consensus 718 s~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSf 761 (854)
T KOG0477|consen 718 SLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSF 761 (854)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHH
Confidence 35688888886555555444557889999998888776555
No 269
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.28 E-value=1.6e-05 Score=86.20 Aligned_cols=255 Identities=16% Similarity=0.111 Sum_probs=134.0
Q ss_pred CccccChHHHHHHHHHHHHhhchhcc-C---CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe-CCCCCCCc----h
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAH-N---APFRNMLFYGPPGTGKTMAARELARKSGLDYALMT-GGDVAPLG----P 441 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~-~---~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~-~~~l~~~g----~ 441 (644)
-.|.|+.++++.+..++..-.....+ | +.--|+||.|.|||.|+-|.+.+-+-...-++.-. |+.-.++. .
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 34678999999987765433222111 1 12238999999999999999988765433332211 11111000 0
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHH-HHHHHHHHHHh-CCCCCCEEEEEEeCCCC-----
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQ-RSALNALLFRT-GDQSKDIVLALATNRPG----- 512 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~-~~~l~~lL~~~-~~~~~~viiI~ttN~~~----- 512 (644)
+..+.-.-+=--|.....++|++|||+|++- .... .++++ ++.+..--..+ -..++.+.|+++.|.+.
T Consensus 411 D~~tReFylEGGAMVLADgGVvCIDEFDKMr---e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd 487 (729)
T KOG0481|consen 411 DPSTREFYLEGGAMVLADGGVVCIDEFDKMR---EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDD 487 (729)
T ss_pred cCCcceEEEecceEEEecCCEEEeehhhccC---chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccc
Confidence 0000000000002223347899999999982 2111 11111 11111111011 12345666777777532
Q ss_pred --------CCCHHHhcccceeEecCCCCHHHHHHHHHHH-HHHHhh----hhCC---CCCCcchhhhhhhhhh--hh-cc
Q 006458 513 --------DLDSAVADRIDEVLEFPLPGQEERFKLLKLY-LDKYIA----QAGS---RKPGLVHRLFKSEQQK--IE-IK 573 (644)
Q Consensus 513 --------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~-l~~~~~----~~~~---~~~~~~~~~~~~~~~~--~~-~~ 573 (644)
+|-+.+++|||.++.+..-..+++-..|-.+ ++-... .... ......-..++++-.- .+ .+
T Consensus 488 ~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~P 567 (729)
T KOG0481|consen 488 TKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGP 567 (729)
T ss_pred cCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCC
Confidence 4568999999999888766555444333332 222111 0011 1111111233443221 11 14
Q ss_pred CCCHHHHHHHHHHcC-------------------CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 574 GLTDDILMEAAAKTE-------------------GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 574 ~~~d~~l~~LA~~t~-------------------G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
.++.+.-+.|.+++- -.+.|+|+.+++.....+.-.-....|+.|+++++..+..
T Consensus 568 rLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~v 641 (729)
T KOG0481|consen 568 RLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQV 641 (729)
T ss_pred CCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhH
Confidence 466666666655431 2466999999987777777677788999999999887753
No 270
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.27 E-value=5e-06 Score=89.83 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=136.2
Q ss_pred CccccChHHHHHHHHHHH-HhhchhccCCCC---ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHH
Q 006458 371 GDVILHPSLQKRIRQLSG-ATANTKAHNAPF---RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK 446 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~-~~~~~~~~~~p~---~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~ 446 (644)
-.|.|+.++++.|.-++- ........|..+ -||+|.|.||+-||-|.+.+.+......+...- .-+++|-.. ..
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGr-GSSGVGLTA-AV 419 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGR-GSSGVGLTA-AV 419 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCC-CCCccccch-hh
Confidence 346788888888854332 222222223222 379999999999999999998876555554321 111111000 00
Q ss_pred HHH------HH-HHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH----h------CCCCCCEEEEEEeC
Q 006458 447 IHQ------LF-DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR----T------GDQSKDIVLALATN 509 (644)
Q Consensus 447 l~~------~f-~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~----~------~~~~~~viiI~ttN 509 (644)
++. ++ --|.....++|-.|||+|++. +..+..+..++.. + -..+..+.|+++.|
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~---------e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMD---------ESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhh---------hhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 000 00 001112225688999999983 3334444444332 1 01344567777877
Q ss_pred CCC-------------CCCHHHhcccceeEe-cCCCCHHHHHHHHHHHHH--HHhhhhCCCCCCcchhhhhhhhh--hhh
Q 006458 510 RPG-------------DLDSAVADRIDEVLE-FPLPGQEERFKLLKLYLD--KYIAQAGSRKPGLVHRLFKSEQQ--KIE 571 (644)
Q Consensus 510 ~~~-------------~ld~al~~Rfd~~i~-~~~p~~~er~~Il~~~l~--~~~~~~~~~~~~~~~~~~~~~~~--~~~ 571 (644)
... .|+.+|++|||..+- .+.|+.+.=..+.++..- ....++......+--.++..+-. +-.
T Consensus 491 PayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~ 570 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRK 570 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhc
Confidence 532 688999999997664 467777665555555432 22222222111111122222211 111
Q ss_pred ccCCCHHHHHHHHHHc------------C-CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 572 IKGLTDDILMEAAAKT------------E-GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 572 ~~~~~d~~l~~LA~~t------------~-G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
-+.+++...+.|...+ . --|+|-|-.+++...|.+.-+-...+..+++++++.-.-
T Consensus 571 ~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 571 NPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 1335555555554321 1 236788999998888887777778999999999998653
No 271
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.26 E-value=2e-06 Score=92.61 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=58.4
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHcCCC-eEEEeCCCCCCCchh-------HHHHHHHHHHHHHhcCCCeEEEEec
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKSGLD-YALMTGGDVAPLGPQ-------AVTKIHQLFDWAKKSKRGLLLFIDE 467 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~-~~~i~~~~l~~~g~~-------~~~~l~~~f~~a~~~~~~~VL~IDE 467 (644)
...+++|++||||+|+|||+|.-.+...+... -.++....+...... ....+..+.+... ....||+|||
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~--~~~~lLcfDE 135 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA--KESRLLCFDE 135 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH--hcCCEEEEee
Confidence 34577999999999999999999998877431 111110011000000 0001122222222 1234999999
Q ss_pred cchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 468 ADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 468 id~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
++.- +...-.++..|+..+ ...++++|+|||.+
T Consensus 136 F~V~---------DiaDAmil~rLf~~l--~~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 136 FQVT---------DIADAMILKRLFEAL--FKRGVVLVATSNRP 168 (362)
T ss_pred eecc---------chhHHHHHHHHHHHH--HHCCCEEEecCCCC
Confidence 9862 112334555565555 45789999999974
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=1.3e-05 Score=75.11 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
-.++++||||+|||+++..++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 359999999999999999999887
No 273
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.16 E-value=1.5e-05 Score=89.09 Aligned_cols=171 Identities=26% Similarity=0.311 Sum_probs=107.9
Q ss_pred EEEecCCCCChHHHHHHHHHHc--CCCeEEEeCCCCCC--CchhHHHHHHHHHHHHHh--------cCCCeEEEEeccch
Q 006458 403 MLFYGPPGTGKTMAARELARKS--GLDYALMTGGDVAP--LGPQAVTKIHQLFDWAKK--------SKRGLLLFIDEADA 470 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l--~~~~~~i~~~~l~~--~g~~~~~~l~~~f~~a~~--------~~~~~VL~IDEid~ 470 (644)
+|+.|.|||||-.|+++|-... ..||+.|||..+.. .+.+.++.+...|+-+.. ...++.||+|||..
T Consensus 339 vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd 418 (606)
T COG3284 339 VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGD 418 (606)
T ss_pred eEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhhh
Confidence 9999999999999999997665 57899999988743 222333333333333322 22356899999998
Q ss_pred hhhccccCcCCHHHHHHHHHHHHHh-----C--CCCCCEEEEEEeCCC-------CCCCHHHhcccceeEecCCCCHHHH
Q 006458 471 FLCERNKTYMSEAQRSALNALLFRT-----G--DQSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEER 536 (644)
Q Consensus 471 l~~~r~~~~~~~~~~~~l~~lL~~~-----~--~~~~~viiI~ttN~~-------~~ld~al~~Rfd~~i~~~~p~~~er 536 (644)
| .-..+..|..+|++- + ...-+|.||.+|+.. ..|...|-=|+ ..+.|.+|...+|
T Consensus 419 ~---------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R 488 (606)
T COG3284 419 M---------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRER 488 (606)
T ss_pred c---------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhcc
Confidence 6 445666666666652 1 133468899998863 34444555466 5556666666655
Q ss_pred HH---HHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 006458 537 FK---LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQA 604 (644)
Q Consensus 537 ~~---Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~a 604 (644)
.. +|..++.+... +. -.++++.+..|...-.--+.|++.+++..+-+
T Consensus 489 ~d~~~~l~~~~~~~~~---~~------------------~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 489 SDRIPLLDRILKREND---WR------------------LQLDDDALARLLAYRWPGNIRELDNVIERLAA 538 (606)
T ss_pred cccHHHHHHHHHHccC---CC------------------ccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 44 44445444321 11 12788888888777554467787777764333
No 274
>PHA02774 E1; Provisional
Probab=98.15 E-value=2e-05 Score=88.16 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=61.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE-EeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL-MTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~-i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
++++||||||||||+++.+|++.++..++. +|...-.. +..+.. -.|++|||+-.-.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~Fw------------Lqpl~d---~ki~vlDD~t~~~------- 492 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFW------------LQPLAD---AKIALLDDATHPC------- 492 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccc------------cchhcc---CCEEEEecCcchH-------
Confidence 579999999999999999999998655443 55421111 112221 3599999993210
Q ss_pred CCHHHHHHHHHHHHHh----CCC------CCCEEEEEEeCCCCCCCH---HHhcccceeEecCCC
Q 006458 480 MSEAQRSALNALLFRT----GDQ------SKDIVLALATNRPGDLDS---AVADRIDEVLEFPLP 531 (644)
Q Consensus 480 ~~~~~~~~l~~lL~~~----~~~------~~~viiI~ttN~~~~ld~---al~~Rfd~~i~~~~p 531 (644)
.......+..+|..- +.. -....+|.|||..-.-++ .|.+|+ .+++|+.|
T Consensus 493 -w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~ 555 (613)
T PHA02774 493 -WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNP 555 (613)
T ss_pred -HHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCC
Confidence 012222333333221 100 112457779996544444 455688 78888665
No 275
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.13 E-value=2.6e-05 Score=81.01 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=93.1
Q ss_pred ccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHH-HH--HcCCCeEEEeCCCCCCC---------
Q 006458 372 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAAREL-AR--KSGLDYALMTGGDVAPL--------- 439 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaL-A~--~l~~~~~~i~~~~l~~~--------- 439 (644)
.+.|..+-.+.+..++........ ..++++.||.|+|||++.... +. ..|-.++.+........
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE----snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE----SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC----CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 345655666666665554433332 256999999999999876543 33 56766665532221111
Q ss_pred -------------chhHHHHHHHHHHHHHh---cCCC-eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCE
Q 006458 440 -------------GPQAVTKIHQLFDWAKK---SKRG-LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDI 502 (644)
Q Consensus 440 -------------g~~~~~~l~~~f~~a~~---~~~~-~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~v 502 (644)
.+.....+..++...+. ...+ .|+++||||-+.+. ..+..+..+++.......++
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h--------~rQtllYnlfDisqs~r~Pi 172 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH--------SRQTLLYNLFDISQSARAPI 172 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc--------hhhHHHHHHHHHHhhcCCCe
Confidence 01111222223332222 1112 45567799988543 22334555555555567788
Q ss_pred EEEEEeCCCC---CCCHHHhccccee-Eec-CCCCHHHHHHHHHHHH
Q 006458 503 VLALATNRPG---DLDSAVADRIDEV-LEF-PLPGQEERFKLLKLYL 544 (644)
Q Consensus 503 iiI~ttN~~~---~ld~al~~Rfd~~-i~~-~~p~~~er~~Il~~~l 544 (644)
.||+.|.+.+ .+...+.+||... |++ |..+..+...|++..+
T Consensus 173 ciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 173 CIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8888766544 5567888999765 555 4446788888888776
No 276
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.12 E-value=0.0001 Score=76.26 Aligned_cols=165 Identities=13% Similarity=0.155 Sum_probs=96.4
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCc-hhHHHHHHH
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQ 449 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g-~~~~~~l~~ 449 (644)
-++|..+++...|..+.+... .|.+|.||.|.+||||+++++..|.-.+..++.+.... .++ .+....++.
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~--~y~~~~f~~dLk~ 79 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLS------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK--GYSIKDFKEDLKK 79 (268)
T ss_dssp ------HHHHHHHHHHHHHHC------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST--TTHHHHHHHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHc------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC--CcCHHHHHHHHHH
Confidence 567788888888877766553 34468999999999999999988888888888776543 232 233456777
Q ss_pred HHHHHHhcCCCeEEEEeccchh----hh-------ccccCc-C-CHHHHH--------------------HHHHHHHHhC
Q 006458 450 LFDWAKKSKRGLLLFIDEADAF----LC-------ERNKTY-M-SEAQRS--------------------ALNALLFRTG 496 (644)
Q Consensus 450 ~f~~a~~~~~~~VL~IDEid~l----~~-------~r~~~~-~-~~~~~~--------------------~l~~lL~~~~ 496 (644)
++..+.-.+.+.+++|+|-+-. +. ...-++ . .++... .++.|+..+
T Consensus 80 ~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rv- 158 (268)
T PF12780_consen 80 ALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERV- 158 (268)
T ss_dssp HHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHH-
T ss_pred HHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHH-
Confidence 7777777777889988876432 11 110000 0 111112 222222222
Q ss_pred CCCCCEEEEEEeCCC-CCC------CHHHhcccceeEecCCCCHHHHHHHHHHHHHHH
Q 006458 497 DQSKDIVLALATNRP-GDL------DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 497 ~~~~~viiI~ttN~~-~~l------d~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
..|.-||++.+.. ..+ -|+|.+++ .+..|...+.+....+-..++...
T Consensus 159 --r~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 159 --RKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp --CCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred --HhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 3566666655443 233 36777777 666777777788888888887654
No 277
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.12 E-value=6.3e-06 Score=83.71 Aligned_cols=131 Identities=24% Similarity=0.367 Sum_probs=81.8
Q ss_pred EEEecCCCCChHHHHHHHHH------HcCCCeEEEeCCCCCCCch--hHHHHHHHHHHHHH-------hcCCCeEEEEec
Q 006458 403 MLFYGPPGTGKTMAARELAR------KSGLDYALMTGGDVAPLGP--QAVTKIHQLFDWAK-------KSKRGLLLFIDE 467 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~------~l~~~~~~i~~~~l~~~g~--~~~~~l~~~f~~a~-------~~~~~~VL~IDE 467 (644)
+||.||+|.||+.+++.|-. ++..+|+.+||..+.+.+. ...+.++..|.-+. ++..+++|||||
T Consensus 211 ~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlflde 290 (531)
T COG4650 211 ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDE 290 (531)
T ss_pred eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHh
Confidence 99999999999999998843 3578899999988865322 12233344443332 344578999999
Q ss_pred cchhhhccccCcCCHHHHHHHHHHHHH-----hC---CCCCCEEEEEEeCC-------CCCCCHHHhcccceeEecCCCC
Q 006458 468 ADAFLCERNKTYMSEAQRSALNALLFR-----TG---DQSKDIVLALATNR-------PGDLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 468 id~l~~~r~~~~~~~~~~~~l~~lL~~-----~~---~~~~~viiI~ttN~-------~~~ld~al~~Rfd~~i~~~~p~ 532 (644)
|..|..+ .+..+..-+.+ ++ ...+++-+|+-|-+ ...+...+.-|+ ....|.+|.
T Consensus 291 igelgad---------eqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpg 360 (531)
T COG4650 291 IGELGAD---------EQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPG 360 (531)
T ss_pred hhhcCcc---------HHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeeccc
Confidence 9987432 22222222222 11 12345666654432 234556666788 778899998
Q ss_pred HHHHHHHHHHH
Q 006458 533 QEERFKLLKLY 543 (644)
Q Consensus 533 ~~er~~Il~~~ 543 (644)
..+|.+-++-.
T Consensus 361 l~qr~ediepn 371 (531)
T COG4650 361 LRQRQEDIEPN 371 (531)
T ss_pred cccCccccCCC
Confidence 88776654433
No 278
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.11 E-value=4.1e-06 Score=74.50 Aligned_cols=24 Identities=46% Similarity=0.800 Sum_probs=21.3
Q ss_pred EEEecCCCCChHHHHHHHHHHcCC
Q 006458 403 MLFYGPPGTGKTMAARELARKSGL 426 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~ 426 (644)
|+||||||+|||++++.|+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999888753
No 279
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.09 E-value=0.00027 Score=75.09 Aligned_cols=133 Identities=18% Similarity=0.191 Sum_probs=73.3
Q ss_pred cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC---------------CCCCHHHhc-
Q 006458 457 SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP---------------GDLDSAVAD- 520 (644)
Q Consensus 457 ~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~---------------~~ld~al~~- 520 (644)
...+.||||||+|++.+. ....+|..+-..+ ...++++|++.+.. .......+.
T Consensus 170 ~~~~iViiIDdLDR~~~~--------~i~~~l~~ik~~~--~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPE--------EIVELLEAIKLLL--DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred CCceEEEEEcchhcCCcH--------HHHHHHHHHHHhc--CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh
Confidence 344689999999997322 3333444333222 34889999987741 022335555
Q ss_pred ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC--CCcHHHHHHH
Q 006458 521 RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSGREIAKL 598 (644)
Q Consensus 521 Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~--G~SgrdI~~L 598 (644)
-|+..+.+|.|+..+...++...+............. ..+.... ..........+..+..... ..++|+|.++
T Consensus 240 iiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~ 314 (325)
T PF07693_consen 240 IIQVPFSLPPPSPSDLERYLNELLESLESETNESDDI--ETLSNSA---SNENLRIDEILNDIIDSIDFSIGNPRDIKRF 314 (325)
T ss_pred hcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccch--hhhhhcc---hhhhhhHHHHHHHHHHhhhhcCCCHHHHHHH
Confidence 5678889999999998888888876654332111100 0000000 0000001233444444332 4589999999
Q ss_pred HHHHHH
Q 006458 599 MASVQA 604 (644)
Q Consensus 599 ~~~~~a 604 (644)
++.+..
T Consensus 315 iN~~~~ 320 (325)
T PF07693_consen 315 INSLSL 320 (325)
T ss_pred HHHHHH
Confidence 976654
No 280
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.08 E-value=4.2e-06 Score=80.96 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=32.8
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC---eEEEeCCC
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGD 435 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---~~~i~~~~ 435 (644)
++|.++..+.|..++. ......+++++|+|++|+|||++++.+...+..+ ++.+++..
T Consensus 2 fvgR~~e~~~l~~~l~-----~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-----AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTG-----GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHH-----HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5677776777665543 1222334789999999999999999887776322 55544433
No 281
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.06 E-value=5.7e-06 Score=81.57 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=62.6
Q ss_pred EEEecCCCCChHHHHHHH-HHHc---CCCeEEEeCCCC--CCCch----hHH------------HHHHHHHHHHHhcCCC
Q 006458 403 MLFYGPPGTGKTMAAREL-ARKS---GLDYALMTGGDV--APLGP----QAV------------TKIHQLFDWAKKSKRG 460 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaL-A~~l---~~~~~~i~~~~l--~~~g~----~~~------------~~l~~~f~~a~~~~~~ 460 (644)
.|++|.||+|||+.|-.. .... |.+++. |...+ ..... ... ........|.. ...+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK-LPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT-SGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc-cCCC
Confidence 689999999999987655 4332 555544 33212 11100 000 00122333432 2258
Q ss_pred eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCC
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p 531 (644)
+||+|||+..+++.+.... ......+ .++... ...+.-||++|..+..+|+.+++.++.++++..+
T Consensus 81 ~liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h--Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH--RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp -EEEETTGGGTSB---T-T------HHH-HGGGGC--CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred cEEEEECChhhcCCCcccc--ccchHHH-HHHHHh--CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 9999999999998876521 0122233 333222 5667889999999999999999988888777654
No 282
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.05 E-value=4.3e-05 Score=74.23 Aligned_cols=32 Identities=34% Similarity=0.355 Sum_probs=25.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
.+|++||||||||+++..++... |.++++++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37999999999999999886653 666666654
No 283
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.04 E-value=0.00012 Score=88.74 Aligned_cols=172 Identities=18% Similarity=0.230 Sum_probs=100.5
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-----------
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------- 438 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----------- 438 (644)
-.++|-.+.+...+... ...+-++++||+|.|||+++...+...+ ++..++...-..
T Consensus 13 ~~~~~~R~rl~~~l~~~-----------~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA-----------NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred ccccCcchHHHHHHhcc-----------cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHH
Confidence 45667777766666321 1234599999999999999999887776 666555422100
Q ss_pred -C-----c--hh------------HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCC
Q 006458 439 -L-----G--PQ------------AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 498 (644)
Q Consensus 439 -~-----g--~~------------~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~ 498 (644)
+ + .. ....+..++........|.||+|||++.+- .+.....+..++.. .
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~---~ 149 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRH---Q 149 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHh---C
Confidence 0 0 00 011122333333333568999999999861 12334455555543 3
Q ss_pred CCCEEEEEEeCCCCCCCHHHhcccceeEecC----CCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 499 SKDIVLALATNRPGDLDSAVADRIDEVLEFP----LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 499 ~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~----~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
+.++.+|++|.....++-.-+..-+..+.+. ..+.++...++...+.. .
T Consensus 150 ~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~---------------------------~ 202 (903)
T PRK04841 150 PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS---------------------------P 202 (903)
T ss_pred CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC---------------------------C
Confidence 5667777777553223221111112344454 67888888877655421 1
Q ss_pred CCHHHHHHHHHHcCCCc
Q 006458 575 LTDDILMEAAAKTEGFS 591 (644)
Q Consensus 575 ~~d~~l~~LA~~t~G~S 591 (644)
++++.+..|.+.|+|+.
T Consensus 203 ~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 203 IEAAESSRLCDDVEGWA 219 (903)
T ss_pred CCHHHHHHHHHHhCChH
Confidence 67788888888888854
No 284
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.04 E-value=0.00024 Score=88.24 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=86.5
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCe---EEEeCCCCCC----Cc-
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY---ALMTGGDVAP----LG- 440 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~---~~i~~~~l~~----~g- 440 (644)
.++++||.+...+.+..++.. .....+.+-|+||+|+||||+|+++++.+...| +.++...+.. ++
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccc
Confidence 478899988888777665532 122345699999999999999999988874432 1222111100 00
Q ss_pred -----hh-HH----HHHHHH-------------HHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC
Q 006458 441 -----PQ-AV----TKIHQL-------------FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 497 (644)
Q Consensus 441 -----~~-~~----~~l~~~-------------f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~ 497 (644)
.. .. ..+..+ +... -..+..+|+||+++.. ..+..+......
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~-L~~krvLLVLDdv~~~--------------~~l~~L~~~~~~ 320 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEER-LKHRKVLIFIDDLDDQ--------------DVLDALAGQTQW 320 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHH-HhCCeEEEEEeCCCCH--------------HHHHHHHhhCcc
Confidence 00 00 000110 1111 1234678999999852 233444332222
Q ss_pred CCCCEEEEEEeCCCCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHH
Q 006458 498 QSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 498 ~~~~viiI~ttN~~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l 544 (644)
...+..||+||... .++. .++.+++++.|+.++-..++..+.
T Consensus 321 ~~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 321 FGSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred CCCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHh
Confidence 23345566677643 3332 457889999999998888887764
No 285
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3e-05 Score=84.24 Aligned_cols=177 Identities=16% Similarity=0.220 Sum_probs=87.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc-------CCCeEEEeCCCCCC------------Cc-----hhHHHHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS-------GLDYALMTGGDVAP------------LG-----PQAVTKIHQLFDWAK 455 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l-------~~~~~~i~~~~l~~------------~g-----~~~~~~l~~~f~~a~ 455 (644)
+..++|+||+|+||||++..||..+ |..+..+++..+.. ++ ......+...+ .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L---~ 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI---T 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH---H
Confidence 4679999999999999999998765 34555565544311 00 11112222222 2
Q ss_pred hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe-CCCCCCCHHHhccc----ceeEecCC
Q 006458 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-NRPGDLDSAVADRI----DEVLEFPL 530 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt-N~~~~ld~al~~Rf----d~~i~~~~ 530 (644)
....+.+||||.++.+.. ....-.-+..++..... ...+++|+.+ .....+. .+.++| ...+-|..
T Consensus 251 ~~~~~DlVLIDTaGr~~~-------~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~-~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPK-------DFMKLAEMKELLNACGR-DAEFHLAVSSTTKTSDVK-EIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred HhCCCCEEEEcCCCCCcc-------CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHH-HHHHHhcCCCCCEEEEEe
Confidence 334578999999997521 11122233444433321 2246666644 4444444 333433 13455556
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHH
Q 006458 531 PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM 599 (644)
Q Consensus 531 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~ 599 (644)
.|...+.-.+-..+........ ++ ...+.+. .|+....-..+++..-||+-++=..++
T Consensus 322 lDet~~~G~~l~~~~~~~~Pi~---------yi-t~Gq~vP-eDl~~~~~~~~~~~l~g~~~~~~~~~~ 379 (388)
T PRK12723 322 LDETTCVGNLISLIYEMRKEVS---------YV-TDGQIVP-HNISIAEPLTFIKKINGYRISDDAEFI 379 (388)
T ss_pred ccCCCcchHHHHHHHHHCCCEE---------EE-eCCCCCh-hhhhhCCHHHHHHHhcCCCccchHHHH
Confidence 6655554433333333221100 00 0111111 123333455666666788876643333
No 286
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.99 E-value=2.7e-05 Score=78.05 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=55.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC----------CCCC-chhHHHHHHHHHHHHH-hcCCCeEEEEecc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD----------VAPL-GPQAVTKIHQLFDWAK-KSKRGLLLFIDEA 468 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~----------l~~~-g~~~~~~l~~~f~~a~-~~~~~~VL~IDEi 468 (644)
..+||||+||+|||++|+.++.. ..++..+++. +... .......+.+.+.... ...++.+||||.+
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 56999999999999999998631 1122222211 0000 0011122223333222 1345789999999
Q ss_pred chhhh------ccc-cC-----cCCHHHHHHHHHHHHHhCCCCCCEEEEE
Q 006458 469 DAFLC------ERN-KT-----YMSEAQRSALNALLFRTGDQSKDIVLAL 506 (644)
Q Consensus 469 d~l~~------~r~-~~-----~~~~~~~~~l~~lL~~~~~~~~~viiI~ 506 (644)
+.|.. .+. .. .........+..++..+.....++++++
T Consensus 91 ~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tA 140 (220)
T TIGR01618 91 SALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATA 140 (220)
T ss_pred HHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99854 121 11 1122344455666666655566666665
No 287
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.97 E-value=4.3e-05 Score=69.36 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
-..|.||+-+.+.|-..+........+..| -.+.|+||||||||++++.||+.+
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 467899999988886544433322333333 456699999999999999999995
No 288
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.96 E-value=0.00012 Score=77.33 Aligned_cols=137 Identities=23% Similarity=0.210 Sum_probs=76.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCC----------------ch-------hHHHHHHHHHHH--
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL----------------GP-------QAVTKIHQLFDW-- 453 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~----------------g~-------~~~~~l~~~f~~-- 453 (644)
-|.+++|||..|||||.+.+.+-+.++.+.+.+++-+...+ .+ +.......+|..
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 34567999999999999999999999999888876543211 11 111122222222
Q ss_pred -HHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcc-cceeEecCCC
Q 006458 454 -AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADR-IDEVLEFPLP 531 (644)
Q Consensus 454 -a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~R-fd~~i~~~~p 531 (644)
+.+.....+|++|.+|.|- +++...-..+-.+...+.. ..+.||+..-.....-..=.+- ...+++||.|
T Consensus 109 ~~t~~d~~~~liLDnad~lr------D~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Y 180 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALR------DMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQYLINTGTLEIVVLHFPQY 180 (438)
T ss_pred HhhccCceEEEEEcCHHhhh------ccchHHHHHHHHHHHHhCC--CceEEEEeccccHHHhhcccCCCCceEEecCCC
Confidence 2223346789999999982 1122222222222222222 2444444432221111000011 2367899999
Q ss_pred CHHHHHHHHHHH
Q 006458 532 GQEERFKLLKLY 543 (644)
Q Consensus 532 ~~~er~~Il~~~ 543 (644)
+.++...|+..-
T Consensus 181 s~~e~~~Il~~~ 192 (438)
T KOG2543|consen 181 SVEETQVILSRD 192 (438)
T ss_pred CHHHHHHHHhcC
Confidence 999998887643
No 289
>PHA02624 large T antigen; Provisional
Probab=97.91 E-value=3.2e-05 Score=86.80 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=66.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcc----c
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER----N 476 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r----~ 476 (644)
+.+||+||||||||+|+.+|++.+|...+.+|+..-. ++-.+.-+.. ..+++|||+-.-.... .
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k---------s~FwL~pl~D---~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK---------LNFELGCAID---QFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch---------hHHHhhhhhh---ceEEEeeeccccccccccCCc
Confidence 4799999999999999999999997666667743321 1111111221 3488899985422211 0
Q ss_pred cCcCC--HHHHHHHHHH-HHHhCCCCCC------EEEEEEeCCCCCCCHHHhcccceeEecCC
Q 006458 477 KTYMS--EAQRSALNAL-LFRTGDQSKD------IVLALATNRPGDLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 477 ~~~~~--~~~~~~l~~l-L~~~~~~~~~------viiI~ttN~~~~ld~al~~Rfd~~i~~~~ 530 (644)
+.+++ ...+..|+-- --.++..+.+ ..+|.|||. ..|+..+.-||-.++.|..
T Consensus 500 G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 11111 2222222221 0011211111 235668886 4578888889988888864
No 290
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.90 E-value=0.00011 Score=72.58 Aligned_cols=101 Identities=23% Similarity=0.258 Sum_probs=57.5
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC---------------------CchhHHHHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP---------------------LGPQAVTKIHQLFDWAK 455 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~---------------------~g~~~~~~l~~~f~~a~ 455 (644)
|+.++|+||+|+||||++-.||..+ +..+..++...+.. ...+....+...+....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3569999999999999999888776 55555555544311 01112223334444443
Q ss_pred hcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006458 456 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 510 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~ 510 (644)
. ....+||||-...... .......+..++..+ .+..+++|+.++.
T Consensus 81 ~-~~~D~vlIDT~Gr~~~-------d~~~~~el~~~~~~~--~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 81 K-KGYDLVLIDTAGRSPR-------DEELLEELKKLLEAL--NPDEVHLVLSATM 125 (196)
T ss_dssp H-TTSSEEEEEE-SSSST-------HHHHHHHHHHHHHHH--SSSEEEEEEEGGG
T ss_pred h-cCCCEEEEecCCcchh-------hHHHHHHHHHHhhhc--CCccceEEEeccc
Confidence 3 2367999998875311 123334455555555 4556777776554
No 291
>PRK08118 topology modulation protein; Reviewed
Probab=97.89 E-value=5.3e-05 Score=72.94 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=64.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 481 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~ 481 (644)
.|+++||||+||||+|+.|++.++.+++.++.--. .++ -. ++. .
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~---------------------~~~-w~---~~~-----------~ 46 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW---------------------KPN-WE---GVP-----------K 46 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc---------------------ccC-Cc---CCC-----------H
Confidence 58999999999999999999999999887753110 000 00 000 0
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHH
Q 006458 482 EAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 482 ~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
+.....+..++. ..+ +|+-.|.+..++ ..+.++|.+|+++.|...-...+++..+...
T Consensus 47 ~~~~~~~~~~~~-----~~~--wVidG~~~~~~~-~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~ 104 (167)
T PRK08118 47 EEQITVQNELVK-----EDE--WIIDGNYGGTMD-IRLNAADTIIFLDIPRTICLYRAFKRRVQYR 104 (167)
T ss_pred HHHHHHHHHHhc-----CCC--EEEeCCcchHHH-HHHHhCCEEEEEeCCHHHHHHHHHHHHHHHc
Confidence 011122222221 122 455555555454 3345799999999999888888988888654
No 292
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.89 E-value=0.0012 Score=70.02 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcC--CCeEEEEeccchhhhccc-----cCcCCHHHHHHHHHHHHHh--CCCCCCEEE---EEEeC---CC
Q 006458 447 IHQLFDWAKKSK--RGLLLFIDEADAFLCERN-----KTYMSEAQRSALNALLFRT--GDQSKDIVL---ALATN---RP 511 (644)
Q Consensus 447 l~~~f~~a~~~~--~~~VL~IDEid~l~~~r~-----~~~~~~~~~~~l~~lL~~~--~~~~~~vii---I~ttN---~~ 511 (644)
+..+++...... .|.+|.||++..|+.... ........-.+...|+..+ .....+..+ +.+|. .+
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 344555555443 478889999999987521 1123444455666666652 233333333 33332 12
Q ss_pred C--CCCHHHhcccc---------------------eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhh
Q 006458 512 G--DLDSAVADRID---------------------EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQ 568 (644)
Q Consensus 512 ~--~ld~al~~Rfd---------------------~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 568 (644)
. .++.++..+-. ..|.++.++.+|...+++.|...-.+..
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~----------------- 284 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRS----------------- 284 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCcccc-----------------
Confidence 2 34444443321 2689999999999999999986533220
Q ss_pred hhhccCCCHHHHHHHHHHcCCCcHHHHHHH
Q 006458 569 KIEIKGLTDDILMEAAAKTEGFSGREIAKL 598 (644)
Q Consensus 569 ~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L 598 (644)
...++...+.+.-.+.| +++++.++
T Consensus 285 ----~~~~~~~~e~~~~~s~G-Np~el~k~ 309 (309)
T PF10236_consen 285 ----RVDEELVLEKLFLSSNG-NPRELEKL 309 (309)
T ss_pred ----CCCCHHHHHHHHHhcCC-CHHHhccC
Confidence 02445566666666544 78887653
No 293
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=7.1e-05 Score=87.77 Aligned_cols=165 Identities=21% Similarity=0.234 Sum_probs=111.3
Q ss_pred CCccccC--hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCCC
Q 006458 370 FGDVILH--PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDVA 437 (644)
Q Consensus 370 ~~~vig~--~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l~ 437 (644)
++-++|. +++...|.-+.+... +|-+|+|.||+|||.++.-++... +..++.++.+.+.
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk---------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTK---------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCC---------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 6778885 444444443332221 457999999999999999999886 2445666654432
Q ss_pred C---CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC----
Q 006458 438 P---LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR---- 510 (644)
Q Consensus 438 ~---~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~---- 510 (644)
. .-++....++.+...+....++.||||||++-+........ .-...+.|-..+ ..+.+-+|+||..
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~----~~d~~nlLkp~L--~rg~l~~IGatT~e~Y~ 329 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG----AIDAANLLKPLL--ARGGLWCIGATTLETYR 329 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch----HHHHHHhhHHHH--hcCCeEEEecccHHHHH
Confidence 2 44567778888888777677789999999999977654421 222333332222 2334889987653
Q ss_pred -CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhh
Q 006458 511 -PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQ 550 (644)
Q Consensus 511 -~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~ 550 (644)
.-.-+|+|-+|| ..+.++.|+......||...-..|...
T Consensus 330 k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~~e~~ 369 (898)
T KOG1051|consen 330 KCIEKDPALERRW-QLVLVPIPSVENLSLILPGLSERYEVH 369 (898)
T ss_pred HHHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhhhccc
Confidence 124589999999 777899999888777888777765543
No 294
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.87 E-value=0.00042 Score=76.52 Aligned_cols=243 Identities=17% Similarity=0.188 Sum_probs=136.1
Q ss_pred ccccChHHHHHHHHHH-HHhhchhccCCCC---ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCc-------
Q 006458 372 DVILHPSLQKRIRQLS-GATANTKAHNAPF---RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG------- 440 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~-~~~~~~~~~~~p~---~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g------- 440 (644)
.|.|++.+++.|.-++ ........+|... -||||+|.|-|-|+-|.+.+-+.....+... |-.-+++|
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TT-GRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATT-GRGSSGVGLTAAVTT 380 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhccccccccc-CCCCCCccceeEEee
Confidence 3568888888886543 3333333444333 3799999999999999999977643322221 11111111
Q ss_pred -hh-HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh----C------CCCCCEEEEEEe
Q 006458 441 -PQ-AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----G------DQSKDIVLALAT 508 (644)
Q Consensus 441 -~~-~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~----~------~~~~~viiI~tt 508 (644)
.+ ++..+. .-|......+|++|||||++ ++..+-++..++..- . ..+..+.+|++.
T Consensus 381 D~eTGERRLE---AGAMVLADRGVVCIDEFDKM---------sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAA 448 (818)
T KOG0479|consen 381 DQETGERRLE---AGAMVLADRGVVCIDEFDKM---------SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAA 448 (818)
T ss_pred ccccchhhhh---cCceEEccCceEEehhcccc---------cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeec
Confidence 11 111211 11222223469999999997 334455566555431 1 245678899999
Q ss_pred CCCC-------------CCCHHHhcccceeEec-CCCCHHHHHHHHHHHHHH--HhhhhCC------CC-----------
Q 006458 509 NRPG-------------DLDSAVADRIDEVLEF-PLPGQEERFKLLKLYLDK--YIAQAGS------RK----------- 555 (644)
Q Consensus 509 N~~~-------------~ld~al~~Rfd~~i~~-~~p~~~er~~Il~~~l~~--~~~~~~~------~~----------- 555 (644)
|... .|+..|++|||..+.+ +.-+.+-=..|-.+.|.- |...... .+
T Consensus 449 NPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~ 528 (818)
T KOG0479|consen 449 NPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENM 528 (818)
T ss_pred CccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccc
Confidence 9743 4688999999987655 333333222333333322 1111100 00
Q ss_pred ------------CCcch-------------hhhhhhhh--hhhc-cCCCHHHHHHHHHHcC---------------CCcH
Q 006458 556 ------------PGLVH-------------RLFKSEQQ--KIEI-KGLTDDILMEAAAKTE---------------GFSG 592 (644)
Q Consensus 556 ------------~~~~~-------------~~~~~~~~--~~~~-~~~~d~~l~~LA~~t~---------------G~Sg 592 (644)
..+|+ .+++++-. +..+ +.++++....|++.+. -.+.
T Consensus 529 e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTA 608 (818)
T KOG0479|consen 529 EDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITA 608 (818)
T ss_pred cccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcH
Confidence 00010 01222211 1112 5688889988887642 3467
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 593 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 593 rdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
|.|+.|++..-+-+..+-..+++.++...+++...
T Consensus 609 RtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~ 643 (818)
T KOG0479|consen 609 RTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLR 643 (818)
T ss_pred HHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHH
Confidence 99999997665555555568888888888876543
No 295
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.87 E-value=0.00019 Score=85.82 Aligned_cols=197 Identities=17% Similarity=0.185 Sum_probs=108.2
Q ss_pred ccEEEecCCCCChHHH-HHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHh------cC----CCeEEEEeccc
Q 006458 401 RNMLFYGPPGTGKTMA-ARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKK------SK----RGLLLFIDEAD 469 (644)
Q Consensus 401 ~~iLL~GppGtGKT~l-AkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~------~~----~~~VL~IDEid 469 (644)
++++++||||+|||++ +-+|-..+-..++.+|.+.-... ......++.-...... .+ ...|||.|||+
T Consensus 1495 R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeIn 1573 (3164)
T COG5245 1495 RSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-PSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEIN 1573 (3164)
T ss_pred ceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-HHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccC
Confidence 5799999999999995 56777777777777776443221 1111122111111100 11 12589999999
Q ss_pred hhhhccccCcCCHHHHHHHHHHHHHhCC---------CCCCEEEEEEeCCCCCC-----CHHHhcccceeEecCCCCHHH
Q 006458 470 AFLCERNKTYMSEAQRSALNALLFRTGD---------QSKDIVLALATNRPGDL-----DSAVADRIDEVLEFPLPGQEE 535 (644)
Q Consensus 470 ~l~~~r~~~~~~~~~~~~l~~lL~~~~~---------~~~~viiI~ttN~~~~l-----d~al~~Rfd~~i~~~~p~~~e 535 (644)
++...... ++..--.+..++..-+- .-.+++++++||.+.+. ...|+++- ..+++.+|....
T Consensus 1574 --Lp~~~~y~-~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~ype~~S 1649 (3164)
T COG5245 1574 --LPYGFEYY-PPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCCYPELAS 1649 (3164)
T ss_pred --CccccccC-CCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEecCcchhh
Confidence 33322221 11211123333333111 22468888999987644 34555554 888999999999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHHhC
Q 006458 536 RFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK-------TEGFSGREIAKLMASVQAAVYG 608 (644)
Q Consensus 536 r~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~-------t~G~SgrdI~~L~~~~~aa~~~ 608 (644)
...|...++.......+ -++.....+- .-+-..+...-.+ --||+||||...++++..++..
T Consensus 1650 L~~Iyea~l~~s~l~~~---------ef~~~se~~~--~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT 1718 (3164)
T COG5245 1650 LRNIYEAVLMGSYLCFD---------EFNRLSEETM--SASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAET 1718 (3164)
T ss_pred HHHHHHHHHHHHHHhhH---------HHHHHHHHHH--HHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhc
Confidence 99999988865432100 0111000000 0000111111111 1489999999999999888765
Q ss_pred CCCCc
Q 006458 609 SENCV 613 (644)
Q Consensus 609 ~~~~~ 613 (644)
..+..
T Consensus 1719 ~~~t~ 1723 (3164)
T COG5245 1719 RIDTP 1723 (3164)
T ss_pred CCCCC
Confidence 54433
No 296
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.82 E-value=5.6e-05 Score=84.58 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCCccccChHHHHHHHHHHHH-hhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-CCeEEEeC
Q 006458 369 GFGDVILHPSLQKRIRQLSGA-TANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-LDYALMTG 433 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~-~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-~~~~~i~~ 433 (644)
.|++++|.++++.+|-..+.. ...... .-..++|+||||+|||+|++.|++.+. .+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~---~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEE---KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCC---CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 489999999999998665533 223322 224699999999999999999999884 56666655
No 297
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.80 E-value=0.00016 Score=69.85 Aligned_cols=103 Identities=21% Similarity=0.247 Sum_probs=61.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHH--------------------HHHHHHHHHhcCCCe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK--------------------IHQLFDWAKKSKRGL 461 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~--------------------l~~~f~~a~~~~~~~ 461 (644)
.+|++||||+|||++|..++..++.+++++..+... ..+.... +..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~--~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~--~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF--DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD--AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC--hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh--cCCCC
Confidence 489999999999999999999988887777654432 2122112 22322211 23367
Q ss_pred EEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006458 462 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 510 (644)
Q Consensus 462 VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~ 510 (644)
+|+||-+..+................+..++..+......+ |+++|.
T Consensus 79 ~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tv--VlVs~E 125 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKI--ILVTNE 125 (170)
T ss_pred EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCE--EEEEcC
Confidence 89999998886533211101233445666666665444444 444554
No 298
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=1.7e-05 Score=71.43 Aligned_cols=31 Identities=39% Similarity=0.733 Sum_probs=27.5
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
|+|.|||||||||+|+.||+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7999999999999999999999887766543
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=6.2e-05 Score=81.22 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=27.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----C-CCeEEEeCCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----G-LDYALMTGGDV 436 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~-~~~~~i~~~~l 436 (644)
..++|+||+|+||||++..||..+ | ..+..++...+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 569999999999999999998764 3 34555555444
No 300
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.0011 Score=70.80 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=72.6
Q ss_pred cCCCeEEEEeccchhhh----ccc-cCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeC---CCC--------------CC
Q 006458 457 SKRGLLLFIDEADAFLC----ERN-KTYMSEAQRSALNALLFRTGDQSKDIVLALATN---RPG--------------DL 514 (644)
Q Consensus 457 ~~~~~VL~IDEid~l~~----~r~-~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN---~~~--------------~l 514 (644)
..-+.+|.||.+..++. ++. .....+..-..+..+...+..+..+-.+|++.. .+. .+
T Consensus 313 ~~~kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 313 SKVKVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cCccEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhc
Confidence 33456888999999987 222 223344444556666666654333324444433 111 22
Q ss_pred CHHHhc---ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 515 DSAVAD---RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 515 d~al~~---Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
++...+ -| ..|+++.++.+|-..++.+|++...+... ..+++.++++--.+ +..
T Consensus 393 g~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kk---------------------v~~Ee~~kql~fLS-ngN 449 (461)
T KOG3928|consen 393 GEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKK---------------------VPGEENIKQLYFLS-NGN 449 (461)
T ss_pred CccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhh---------------------cCcccchhhhhhhc-CCC
Confidence 333332 45 55889999999999999999987543200 12356666666666 557
Q ss_pred HHHHHHHHH
Q 006458 592 GREIAKLMA 600 (644)
Q Consensus 592 grdI~~L~~ 600 (644)
++.+..+|.
T Consensus 450 P~l~~~lca 458 (461)
T KOG3928|consen 450 PSLMERLCA 458 (461)
T ss_pred HHHHHHHHH
Confidence 788888775
No 301
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.77 E-value=0.00023 Score=78.03 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=75.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 481 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~ 481 (644)
.++|+||.+||||++++.+.+.+...+++++..++..........+... ..+... ....+|||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~-~~~~~~-~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAY-IELKER-EKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHH-HHhhcc-CCceEEEecccCc----------
Confidence 6999999999999999988888766567777666654433332222222 222212 2468999999985
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCC---CCCCCHHHhcccceeEecCCCCHHHHHHH
Q 006458 482 EAQRSALNALLFRTGDQSKDIVLALATNR---PGDLDSAVADRIDEVLEFPLPGQEERFKL 539 (644)
Q Consensus 482 ~~~~~~l~~lL~~~~~~~~~viiI~ttN~---~~~ld~al~~Rfd~~i~~~~p~~~er~~I 539 (644)
+....++..+.... ..++++++ +|. ...+...+..|. ..+.+.+.+..+...+
T Consensus 107 ~~W~~~lk~l~d~~---~~~v~itg-sss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 107 PDWERALKYLYDRG---NLDVLITG-SSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred hhHHHHHHHHHccc---cceEEEEC-CchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 23444555554222 11344433 332 234556666786 8888899999998763
No 302
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.76 E-value=1.9e-05 Score=76.11 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.6
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+|+|+|+||+||||+++.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 303
>PRK04296 thymidine kinase; Provisional
Probab=97.76 E-value=0.00019 Score=70.62 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=41.4
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC-C--C------CCCchhH----HHHHHHHHHHHHh-cCCCeEEEE
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMTGG-D--V------APLGPQA----VTKIHQLFDWAKK-SKRGLLLFI 465 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~-~--l------~~~g~~~----~~~l~~~f~~a~~-~~~~~VL~I 465 (644)
.|++||||+|||+++..++..+ |..++.+.++ + . ...|... ......++..+.. ...+.||+|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviI 84 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLI 84 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEE
Confidence 7899999999999998887765 5566656431 1 0 0011110 1122334443332 334689999
Q ss_pred eccchh
Q 006458 466 DEADAF 471 (644)
Q Consensus 466 DEid~l 471 (644)
||++.|
T Consensus 85 DEaq~l 90 (190)
T PRK04296 85 DEAQFL 90 (190)
T ss_pred EccccC
Confidence 999765
No 304
>PF14516 AAA_35: AAA-like domain
Probab=97.76 E-value=0.00069 Score=72.53 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=92.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCc-h-------------------------------hHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG-P-------------------------------QAVT 445 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g-~-------------------------------~~~~ 445 (644)
..+.++||..+|||++...+.+.+ |...+.+++..+.... . ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 459999999999999999887665 6677777766542200 0 0011
Q ss_pred HHHHHHHH--HHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----CCCCEEEEEEeCCCCCCCHHH
Q 006458 446 KIHQLFDW--AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----QSKDIVLALATNRPGDLDSAV 518 (644)
Q Consensus 446 ~l~~~f~~--a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----~~~~viiI~ttN~~~~ld~al 518 (644)
.+...|.. ......|.||+|||+|.++.... ....++..+-..... ...++.+|++......+....
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~ 185 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDI 185 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCC
Confidence 12223332 23345689999999999864211 112233222222221 223455555433221111111
Q ss_pred h-c--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 519 A-D--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 519 ~-~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
. + .+...|.++..+.++...+++.+-.. +++..++.|-..|.|.. -=+
T Consensus 186 ~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----------------------------~~~~~~~~l~~~tgGhP-~Lv 236 (331)
T PF14516_consen 186 NQSPFNIGQPIELPDFTPEEVQELAQRYGLE----------------------------FSQEQLEQLMDWTGGHP-YLV 236 (331)
T ss_pred CCCCcccccceeCCCCCHHHHHHHHHhhhcc----------------------------CCHHHHHHHHHHHCCCH-HHH
Confidence 0 1 34567888999999988877665211 45566888888887743 334
Q ss_pred HHHH
Q 006458 596 AKLM 599 (644)
Q Consensus 596 ~~L~ 599 (644)
..+|
T Consensus 237 ~~~~ 240 (331)
T PF14516_consen 237 QKAC 240 (331)
T ss_pred HHHH
Confidence 4444
No 305
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.76 E-value=0.0016 Score=69.24 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=28.4
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
++..++|+||+|+||||++..||..+ |..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 44679999999999999999998876 4556555543
No 306
>PRK14974 cell division protein FtsY; Provisional
Probab=97.75 E-value=0.00053 Score=73.22 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=44.6
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC---------------------CchhHHHHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP---------------------LGPQAVTKIHQLFDWAK 455 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~---------------------~g~~~~~~l~~~f~~a~ 455 (644)
+..++|+||||+||||++..||..+ |..+..+++..+.. .+.+....+...+..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999998775 45565565443210 11111122233334444
Q ss_pred hcCCCeEEEEeccchh
Q 006458 456 KSKRGLLLFIDEADAF 471 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l 471 (644)
.. .+++|+||.+..+
T Consensus 220 ~~-~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 AR-GIDVVLIDTAGRM 234 (336)
T ss_pred hC-CCCEEEEECCCcc
Confidence 33 3679999999875
No 307
>PRK07261 topology modulation protein; Provisional
Probab=97.73 E-value=0.00016 Score=69.98 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=63.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 481 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~ 481 (644)
.|+++|+||+||||+++.|+..++.+++.++.-... +.. .+.+ .
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~----------------------~~~---~~~~-----------~ 45 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ----------------------PNW---QERD-----------D 45 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec----------------------ccc---ccCC-----------H
Confidence 389999999999999999999998887765431110 000 0010 0
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHH
Q 006458 482 EAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 546 (644)
Q Consensus 482 ~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~ 546 (644)
+.....+..++ .... +|+-.|....+-+..+.++|.+|.+..|-......+++..+..
T Consensus 46 ~~~~~~~~~~~-----~~~~--wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 46 DDMIADISNFL-----LKHD--WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred HHHHHHHHHHH-----hCCC--EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 01111222222 1122 4555554443435566689999999999888888888887754
No 308
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.72 E-value=3.6e-05 Score=76.13 Aligned_cols=97 Identities=24% Similarity=0.270 Sum_probs=50.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--Cch---hHHHHHHHHHHHHHh--------cCCCeEEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--LGP---QAVTKIHQLFDWAKK--------SKRGLLLFI 465 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--~g~---~~~~~l~~~f~~a~~--------~~~~~VL~I 465 (644)
.+++.||||||||++++.+...+ |..++.+....-.. +.. .....++.++..... ..+..||||
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 47889999999999999987665 55565554322100 000 000111111111111 233579999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 510 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~ 510 (644)
||+..+. ...+..++..+.....++++|+=.+.
T Consensus 100 DEasmv~------------~~~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD------------SRQLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B------------HHHHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred ecccccC------------HHHHHHHHHHHHhcCCEEEEECCcch
Confidence 9998862 23466666666554556666665443
No 309
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.69 E-value=0.00031 Score=67.79 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=61.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHH-----------------HHHHHHHHHhcCCCeEEEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK-----------------IHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~-----------------l~~~f~~a~~~~~~~VL~I 465 (644)
+|++|+||+|||++|..++...+.+++++...... +.+.... ...+.........+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~--d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF--DDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC--CHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEE
Confidence 78999999999999999998877777777544321 2221111 1122222222224679999
Q ss_pred eccchhhhccccCcCC---HHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 466 DEADAFLCERNKTYMS---EAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 466 DEid~l~~~r~~~~~~---~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
|-+..+...-...... ......+..++..+.... .-+|+++|..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~viVsnEv 126 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKP--GTLILVSNEV 126 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCC--CcEEEEECCc
Confidence 9998876543322111 223445566666664433 3345556653
No 310
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.67 E-value=0.00055 Score=65.15 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=70.2
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEE---EeCCC-------------C--CCCc-------h---hHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYAL---MTGGD-------------V--APLG-------P---QAVTKIHQL 450 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~---i~~~~-------------l--~~~g-------~---~~~~~l~~~ 450 (644)
-+.+|+++|+|||++|-.+|-.. |..+.. +.+.. + ...| . .........
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 47899999999999999987654 555554 33321 0 0000 0 111122333
Q ss_pred HHHH---HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEe
Q 006458 451 FDWA---KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLE 527 (644)
Q Consensus 451 f~~a---~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~ 527 (644)
+..+ .....+++|+|||+-..+.-.-- -...++..+...+.++-+|+|... .++.|+.+.|.+-+
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli---------~~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~AD~VTE 151 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLL---------DVEEVVDLLKAKPEDLELVLTGRN---APKELIEAADLVTE 151 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCC---------CHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCceeee
Confidence 3333 34566899999999875332110 123344445566778889999876 56888888877766
Q ss_pred cC
Q 006458 528 FP 529 (644)
Q Consensus 528 ~~ 529 (644)
+.
T Consensus 152 m~ 153 (159)
T cd00561 152 MR 153 (159)
T ss_pred cc
Confidence 54
No 311
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.66 E-value=0.00016 Score=75.96 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCCCe-EEEeCCCCCC--------CchhHHHHHHHHHHHHHhcCCCeEEEEec
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGLDY-ALMTGGDVAP--------LGPQAVTKIHQLFDWAKKSKRGLLLFIDE 467 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~-~~i~~~~l~~--------~g~~~~~~l~~~f~~a~~~~~~~VL~IDE 467 (644)
..++++++|||+-|+|||+|.-.+...+..+- .++....+.. ..+.. .-+..+.+... +...||+|||
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~--~~~~vLCfDE 138 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA--AETRVLCFDE 138 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH--hcCCEEEeee
Confidence 34778999999999999999999888764221 1111000000 00000 01111111111 1245999999
Q ss_pred cchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006458 468 ADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 510 (644)
Q Consensus 468 id~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~ 510 (644)
+..- +-..-.+|..|+..+ ...+|++|+|||.
T Consensus 139 F~Vt---------DI~DAMiL~rL~~~L--f~~GV~lvaTSN~ 170 (367)
T COG1485 139 FEVT---------DIADAMILGRLLEAL--FARGVVLVATSNT 170 (367)
T ss_pred eeec---------ChHHHHHHHHHHHHH--HHCCcEEEEeCCC
Confidence 9751 112334566666665 3558999999996
No 312
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.65 E-value=0.00092 Score=67.84 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=77.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCe---EEEeCCCCCCC-------------chhHHH-HH---HHHHHHHHh----
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDY---ALMTGGDVAPL-------------GPQAVT-KI---HQLFDWAKK---- 456 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~---~~i~~~~l~~~-------------g~~~~~-~l---~~~f~~a~~---- 456 (644)
-.+++.|++|||||++++.|-..+...| +.++...-..+ ..+... .+ .........
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3689999999999999999987775432 22222111000 001100 11 111111111
Q ss_pred --cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHH
Q 006458 457 --SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQE 534 (644)
Q Consensus 457 --~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~ 534 (644)
..+..+|+|||+..- ......+..++. ...+-++.+|+.+...-.+++.++.-++.++-++ .+..
T Consensus 94 ~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~--~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~~ 160 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGDK----------KLKSKILRQFFN--NGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSKR 160 (241)
T ss_pred cCCCCCeEEEEeCCCCc----------hhhhHHHHHHHh--cccccceEEEEEeeecccCCHHHhhcceEEEEec-CcHH
Confidence 134679999998531 011233444442 3467789999999988999999988888888776 4666
Q ss_pred HHHHHHHHH
Q 006458 535 ERFKLLKLY 543 (644)
Q Consensus 535 er~~Il~~~ 543 (644)
++..|++.+
T Consensus 161 dl~~i~~~~ 169 (241)
T PF04665_consen 161 DLENIYRNM 169 (241)
T ss_pred HHHHHHHhc
Confidence 666665554
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.65 E-value=0.00057 Score=75.49 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=31.4
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 436 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l 436 (644)
.++..++|+|++|+|||+++..||..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 356789999999999999999999877 566666666544
No 314
>PF13479 AAA_24: AAA domain
Probab=97.64 E-value=0.00022 Score=71.46 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=60.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE-EeCCC--C------CCCchhHHHHHHHHHHHHH-hcCCCeEEEEeccch
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL-MTGGD--V------APLGPQAVTKIHQLFDWAK-KSKRGLLLFIDEADA 470 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~-i~~~~--l------~~~g~~~~~~l~~~f~~a~-~~~~~~VL~IDEid~ 470 (644)
-.+|||||||+|||+++..+ +.+++. +..+. + ..+.......+.+.+.++. ...++.+|+||-++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 35999999999999999888 444433 22221 1 1112224455566665542 345689999999888
Q ss_pred hh-------h-------ccccC----cCCHHHHHHHHHHHHHh-CCCCCCEEEEEE
Q 006458 471 FL-------C-------ERNKT----YMSEAQRSALNALLFRT-GDQSKDIVLALA 507 (644)
Q Consensus 471 l~-------~-------~r~~~----~~~~~~~~~l~~lL~~~-~~~~~~viiI~t 507 (644)
+. . ++... .........+..++..+ .....+|++|+-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah 135 (213)
T PF13479_consen 80 LEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAH 135 (213)
T ss_pred HHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 62 1 01011 11233455566666643 336778888774
No 315
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.63 E-value=0.00017 Score=76.72 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHc
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..||++++|||.-|||||+|.-.+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998876443
No 316
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.00026 Score=74.12 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=56.3
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC--------------------C-CCchhHHHHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV--------------------A-PLGPQAVTKIHQLFDWAK 455 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l--------------------~-~~g~~~~~~l~~~f~~a~ 455 (644)
|..+||+|..||||||++-.||+.+ |..++..-|..| . ..|.+....+...+..|+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999999887 666666655444 1 256677777777788888
Q ss_pred hcCCCeEEEEeccchh
Q 006458 456 KSKRGLLLFIDEADAF 471 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l 471 (644)
..+ .+||+||-+.+|
T Consensus 219 ar~-~DvvliDTAGRL 233 (340)
T COG0552 219 ARG-IDVVLIDTAGRL 233 (340)
T ss_pred HcC-CCEEEEeCcccc
Confidence 666 899999999987
No 317
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00042 Score=74.75 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=45.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC-----------------CchhHHHHHHHHHHHHHhcCC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP-----------------LGPQAVTKIHQLFDWAKKSKR 459 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~-----------------~g~~~~~~l~~~f~~a~~~~~ 459 (644)
++.|+|+||+|+||||++..||..+ |..+..+++..+.. ........+...+..+.....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 4679999999999999999998776 45566665543310 001122233344444443223
Q ss_pred CeEEEEeccchh
Q 006458 460 GLLLFIDEADAF 471 (644)
Q Consensus 460 ~~VL~IDEid~l 471 (644)
.++||||-....
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 678999988763
No 318
>PRK13695 putative NTPase; Provisional
Probab=97.60 E-value=0.00083 Score=64.90 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.++|+|+||+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987765
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.60 E-value=0.00038 Score=75.49 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=48.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--------Cch-------hHHHHHHHHHHHHHhcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--------LGP-------QAVTKIHQLFDWAKKSKRGLL 462 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--------~g~-------~~~~~l~~~f~~a~~~~~~~V 462 (644)
..+||+|+||+|||+|+..++..+ +.+++++++.+-.. ++. .....+..++..+... .+.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~-~~~l 161 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL-KPDL 161 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc-CCcE
Confidence 358999999999999999998765 45677777643211 000 0112344455555443 4789
Q ss_pred EEEeccchhhhc
Q 006458 463 LFIDEADAFLCE 474 (644)
Q Consensus 463 L~IDEid~l~~~ 474 (644)
|+||++..+...
T Consensus 162 VVIDSIq~l~~~ 173 (372)
T cd01121 162 VIIDSIQTVYSS 173 (372)
T ss_pred EEEcchHHhhcc
Confidence 999999988643
No 320
>PTZ00202 tuzin; Provisional
Probab=97.60 E-value=0.0036 Score=68.16 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=47.6
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCC
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGG 434 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~ 434 (644)
....+++|.+.....|..++...... .++-+.|+||+|||||++++.+...++.+.+++|..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~-----~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTA-----HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCC-----CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34678999999999988776532111 224689999999999999999999998776666654
No 321
>PTZ00121 MAEBL; Provisional
Probab=97.59 E-value=0.014 Score=70.24 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=9.9
Q ss_pred cceeEecCCCCHHHHHHH
Q 006458 522 IDEVLEFPLPGQEERFKL 539 (644)
Q Consensus 522 fd~~i~~~~p~~~er~~I 539 (644)
+...|.....+.+++..|
T Consensus 1957 m~~~issgtCS~eerk~L 1974 (2084)
T PTZ00121 1957 MKDNISSGNCSDEERKEL 1974 (2084)
T ss_pred HhhccCCCCCChhhhhch
Confidence 333445666666666544
No 322
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.55 E-value=0.00061 Score=67.45 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=62.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 480 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~ 480 (644)
..++|.|+-|+|||++++.|+.. ++ +.........+....+.. .-|+.|||++.+..
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~----~~--~d~~~~~~~kd~~~~l~~----------~~iveldEl~~~~k------- 109 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPE----YF--SDSINDFDDKDFLEQLQG----------KWIVELDELDGLSK------- 109 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHH----hc--cCccccCCCcHHHHHHHH----------hHheeHHHHhhcch-------
Confidence 45889999999999999999665 21 111111111222111111 34899999998741
Q ss_pred CHHHHHHHHHHHHHhC------------CCCCCEEEEEEeCCCCCCC-HHHhcccceeEecCC
Q 006458 481 SEAQRSALNALLFRTG------------DQSKDIVLALATNRPGDLD-SAVADRIDEVLEFPL 530 (644)
Q Consensus 481 ~~~~~~~l~~lL~~~~------------~~~~~viiI~ttN~~~~ld-~al~~Rfd~~i~~~~ 530 (644)
.....+..++.... ..+..++||+|||..+-|. +.=-||| .+|.+..
T Consensus 110 --~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 110 --KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred --hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 22345666655422 1345688999999977553 3444688 7776665
No 323
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.54 E-value=0.00028 Score=73.78 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=29.6
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc----C-CCeEEEeCCCC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS----G-LDYALMTGGDV 436 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l----~-~~~~~i~~~~l 436 (644)
+..++|+||+|+||||++..||..+ | ..+..+++..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 4579999999999999999998765 3 66777776543
No 324
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.54 E-value=8e-05 Score=71.31 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=28.7
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+.+|+|+||||||||++++.||+.+|.+++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999888754
No 325
>PRK08233 hypothetical protein; Provisional
Probab=97.54 E-value=0.00037 Score=67.31 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=25.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC-CCeEEEeC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG-LDYALMTG 433 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~-~~~~~i~~ 433 (644)
-|.+.|+||+||||+|+.|+..++ ..++.++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 478899999999999999999986 44444443
No 326
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.53 E-value=0.00053 Score=68.73 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=55.9
Q ss_pred ccEEEecCCCCChHHHHHHHHH-----HcCCCeE--------------EEeCCC-CCCCchhHHHHHHHHHHHHHhcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELAR-----KSGLDYA--------------LMTGGD-VAPLGPQAVTKIHQLFDWAKKSKRG 460 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~-----~l~~~~~--------------~i~~~~-l~~~g~~~~~~l~~~f~~a~~~~~~ 460 (644)
+.++|+||.|+|||++.+.++. ..|..+. .+...+ +..........+..+.........+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 5699999999999999999973 2343221 111110 1111111222333333333334568
Q ss_pred eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCC-CCCEEEEEEeCCCCCC
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ-SKDIVLALATNRPGDL 514 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~-~~~viiI~ttN~~~~l 514 (644)
.+++|||+..-+. .......+..++..+-.. ..+..+|++|...+.+
T Consensus 110 slvllDE~~~gtd-------~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 110 SLVLIDEFGKGTD-------TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred cEEEeccccCCCC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 8999999976211 112233444455544222 2344666777665443
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.53 E-value=0.0011 Score=69.02 Aligned_cols=38 Identities=34% Similarity=0.435 Sum_probs=29.8
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 435 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~ 435 (644)
.+++.++|+||||+|||+++..||..+ |..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 345679999999999999999998776 56666666543
No 328
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.52 E-value=0.00036 Score=69.37 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=28.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~ 435 (644)
..++|+||||||||+++..++... |...++++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 358999999999999999987654 66788888754
No 329
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0013 Score=64.37 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccce
Q 006458 445 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDE 524 (644)
Q Consensus 445 ~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~ 524 (644)
..++.+...+........++||++|.| .....|.||+.+++.+.+++||+.|+.+..+.|.++|||..
T Consensus 40 d~iReii~~~~~~~~~~k~iI~~a~~l------------~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~ 107 (206)
T PRK08485 40 EDAKEVIAEAYIAESEEKIIVIAAPSY------------GIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLII 107 (206)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEchHhh------------CHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhhee
Confidence 344455554443332344568899986 35689999999999999999999999999999999999943
Q ss_pred ------------eEecCCCCHHHHHHHHHH
Q 006458 525 ------------VLEFPLPGQEERFKLLKL 542 (644)
Q Consensus 525 ------------~i~~~~p~~~er~~Il~~ 542 (644)
.+.|...+..+....++.
T Consensus 108 ~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 108 EKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHH
Confidence 467888999999888887
No 330
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.00054 Score=66.93 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=22.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
-++|+|+||+|||++++.||+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 389999999999999999999984
No 331
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.50 E-value=0.0004 Score=69.94 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=28.2
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
.++|+||||||||+++..++... +.+++++++.
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 57999999999999999998754 6778888776
No 332
>PRK05973 replicative DNA helicase; Provisional
Probab=97.50 E-value=0.00075 Score=68.54 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=26.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
..+|+.|+||+|||+++-.++... |.++++++.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 358999999999999999886654 777766664
No 333
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.49 E-value=8.3e-05 Score=68.83 Aligned_cols=32 Identities=47% Similarity=0.799 Sum_probs=29.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
+|||++|.||||||+++..||..+|.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 57999999999999999999999999888664
No 334
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00077 Score=74.46 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=56.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC--------Cc------hhHHHHHHHHHHHHHhcCCCe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP--------LG------PQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~--------~g------~~~~~~l~~~f~~a~~~~~~~ 461 (644)
+.++|+||+|+||||++..||..+ +..+..+++..+.. ++ .........+.........++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 579999999999999999887654 35677777655310 00 000000112222233334578
Q ss_pred EEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 462 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 462 VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
+||||...... ........+..++... .....+++|++++..
T Consensus 302 lVlIDt~G~~~-------~d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 302 VILIDTAGRSQ-------RDKRLIEELKALIEFS-GEPIDVYLVLSATTK 343 (424)
T ss_pred EEEEeCCCCCC-------CCHHHHHHHHHHHhcc-CCCCeEEEEEECCCC
Confidence 99999987631 1122333455555421 123456677766543
No 335
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.49 E-value=0.0023 Score=64.06 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=56.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHc-----------------------CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcC
Q 006458 402 NMLFYGPPGTGKTMAARELARKS-----------------------GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSK 458 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l-----------------------~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~ 458 (644)
+|||.|++|+|||+++..|...- |..+..++...+.............+........
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 58999999999999999985331 1233344444443332233334444544443333
Q ss_pred C--CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-CCCCEEEEEEe
Q 006458 459 R--GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSKDIVLALAT 508 (644)
Q Consensus 459 ~--~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-~~~~viiI~tt 508 (644)
+ ..|||+=.++.+ +.....++..+...++. .-.+++||+|-
T Consensus 82 ~g~ha~llVi~~~r~---------t~~~~~~l~~l~~~FG~~~~k~~ivvfT~ 125 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRF---------TEEDREVLELLQEIFGEEIWKHTIVVFTH 125 (212)
T ss_dssp T-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEEEEE
T ss_pred CCCeEEEEEEecCcc---------hHHHHHHHHHHHHHccHHHHhHhhHHhhh
Confidence 2 345665444443 45667788888877764 34567777763
No 336
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.48 E-value=0.0082 Score=67.44 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=95.8
Q ss_pred HHHHHHhcCC--CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEe
Q 006458 450 LFDWAKKSKR--GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLE 527 (644)
Q Consensus 450 ~f~~a~~~~~--~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~ 527 (644)
.+++.....+ +.|++|.|++.++. ++.....|..+...... ..+++||++.+ ..+++.|.+-+ .++.
T Consensus 70 al~~i~~~~~~~~~~~vl~d~h~~~~-------~~~~~r~l~~l~~~~~~-~~~~~i~~~~~--~~~p~el~~~~-~~~~ 138 (489)
T CHL00195 70 ALEFIEKLTPETPALFLLKDFNRFLN-------DISISRKLRNLSRILKT-QPKTIIIIASE--LNIPKELKDLI-TVLE 138 (489)
T ss_pred HHHHHHhcCCCCCcEEEEecchhhhc-------chHHHHHHHHHHHHHHh-CCCEEEEEcCC--CCCCHHHHhce-eEEe
Confidence 4445555443 68999999999872 12344445555444433 34455555543 34667766655 8899
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 006458 528 FPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 607 (644)
Q Consensus 528 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~ 607 (644)
||+|+.+++..+++.+...... .+++..++.++..+.|+|..++..++.....
T Consensus 139 ~~lP~~~ei~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~--- 191 (489)
T CHL00195 139 FPLPTESEIKKELTRLIKSLNI------------------------KIDSELLENLTRACQGLSLERIRRVLSKIIA--- 191 (489)
T ss_pred ecCcCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 9999999999999777643211 2788999999999999999999999875322
Q ss_pred CCCCCccCHHHHHHHHHHHHHhH
Q 006458 608 GSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 608 ~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
..+.++.+++..+++.+....
T Consensus 192 --~~~~~~~~~~~~i~~~k~q~~ 212 (489)
T CHL00195 192 --TYKTIDENSIPLILEEKKQII 212 (489)
T ss_pred --HcCCCChhhHHHHHHHHHHHH
Confidence 235678777777776655443
No 337
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.47 E-value=0.00079 Score=71.40 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=49.1
Q ss_pred CCCCc-cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC----------------CCCchhHHHHHHHHHHHHHh
Q 006458 397 NAPFR-NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV----------------APLGPQAVTKIHQLFDWAKK 456 (644)
Q Consensus 397 ~~p~~-~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l----------------~~~g~~~~~~l~~~f~~a~~ 456 (644)
|.|.. .+++|||||||||+||-.++... |...++++...- .............+.....+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 44443 58899999999999999887543 666777664221 00011112223333444445
Q ss_pred cCCCeEEEEeccchhhhc
Q 006458 457 SKRGLLLFIDEADAFLCE 474 (644)
Q Consensus 457 ~~~~~VL~IDEid~l~~~ 474 (644)
+..+++|+||-+-.|.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 556889999999998763
No 338
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.45 E-value=0.00076 Score=75.06 Aligned_cols=104 Identities=20% Similarity=0.263 Sum_probs=60.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--------Cch-------hHHHHHHHHHHHHHhcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--------LGP-------QAVTKIHQLFDWAKKSKRGLL 462 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--------~g~-------~~~~~l~~~f~~a~~~~~~~V 462 (644)
..+||+||||+|||+|+..++... +.+++++++.+... ++. .....+..++...... .+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~-~~~l 159 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE-KPDL 159 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh-CCCE
Confidence 358999999999999999998765 56778887654211 010 0012234455555443 4789
Q ss_pred EEEeccchhhhcccc--CcCCHHHHHHHHHHHHHhCCCCCCEEEEEE
Q 006458 463 LFIDEADAFLCERNK--TYMSEAQRSALNALLFRTGDQSKDIVLALA 507 (644)
Q Consensus 463 L~IDEid~l~~~r~~--~~~~~~~~~~l~~lL~~~~~~~~~viiI~t 507 (644)
|+||.+..+...... .+.....+..++.|....... ++.+|++
T Consensus 160 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~--~itvilv 204 (446)
T PRK11823 160 VVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQR--GIAVFLV 204 (446)
T ss_pred EEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEE
Confidence 999999988653221 111123444555554444322 3444444
No 339
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.44 E-value=0.0014 Score=67.31 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL 426 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~ 426 (644)
..++|.||+|||||++++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 35999999999999999999998754
No 340
>PRK14528 adenylate kinase; Provisional
Probab=97.44 E-value=0.00091 Score=65.54 Aligned_cols=31 Identities=32% Similarity=0.653 Sum_probs=27.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+.++|.||||+|||++++.|++.+|.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4589999999999999999999999877654
No 341
>PRK04040 adenylate kinase; Provisional
Probab=97.43 E-value=0.0006 Score=66.97 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.5
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
+..++|+|+||||||++++.|+..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35699999999999999999999984
No 342
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.43 E-value=0.0011 Score=62.99 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
-.++|+||+|||||+|.+.+|...
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 359999999999999999999875
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=97.43 E-value=0.0022 Score=70.86 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=47.4
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCCC---------------------chhHHHHHHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPL---------------------GPQAVTKIHQLFD 452 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~~---------------------g~~~~~~l~~~f~ 452 (644)
.++..++|+||+|+||||++-.||..+ |..+..+++..+.+. +.+........+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346789999999999999888888764 666777776544220 1112222233444
Q ss_pred HHHhcCCCeEEEEeccchh
Q 006458 453 WAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 453 ~a~~~~~~~VL~IDEid~l 471 (644)
.+... .+++||||-...+
T Consensus 178 ~a~~~-~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKEN-GYDVVIVDTAGRL 195 (433)
T ss_pred HHHhc-CCCEEEEeCCCCc
Confidence 44433 3789999988764
No 344
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.42 E-value=0.00021 Score=88.94 Aligned_cols=152 Identities=28% Similarity=0.389 Sum_probs=96.2
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----C-------ch
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----L-------GP 441 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----~-------g~ 441 (644)
+|.-+.+++.+..++.+....+ .| +||-||.|+|||.+++.+|+.+|..++.|+-..... + .+
T Consensus 419 ~i~T~~vq~~la~~~~a~~~~~---~p---illqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g 492 (1856)
T KOG1808|consen 419 YIITPRVQKNLADLARAISSGK---FP---ILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNG 492 (1856)
T ss_pred eeccHHHHHHHHHHHHHHhcCC---CC---eEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCC
Confidence 5666777777766665553322 23 999999999999999999999999999997554322 1 11
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh-C----------CCCCCEEEEEEeCC
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-G----------DQSKDIVLALATNR 510 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~-~----------~~~~~viiI~ttN~ 510 (644)
+..-.-..+.. |. ..|+.+|+|++... ..+.-.+|+.++..- + ..+.++++++|=|.
T Consensus 493 ~l~freg~LV~-Al--r~G~~~vlD~lnla---------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 493 DLVFREGVLVQ-AL--RNGDWIVLDELNLA---------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred CeeeehhHHHH-HH--HhCCEEEecccccc---------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 11111111222 22 33889999999874 224455666666541 0 13456777888787
Q ss_pred CC------CCCHHHhcccceeEecCCCCHHHHHHHHHHH
Q 006458 511 PG------DLDSAVADRIDEVLEFPLPGQEERFKLLKLY 543 (644)
Q Consensus 511 ~~------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~ 543 (644)
+. .+..+|++|| ..++|..-+.++...|+...
T Consensus 561 ~~~y~grk~lsRa~~~rf-~e~~f~~~~e~e~~~i~~~~ 598 (1856)
T KOG1808|consen 561 PGTYGGRKILSRALRNRF-IELHFDDIGEEELEEILEHR 598 (1856)
T ss_pred ccccchhhhhhhcccccc-hhhhhhhcCchhhhhhhccc
Confidence 74 3456778888 66666666666666665544
No 345
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.42 E-value=0.00095 Score=67.27 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=66.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCC--------CCc--------------------------hh
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVA--------PLG--------------------------PQ 442 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~--------~~g--------------------------~~ 442 (644)
..+|++||||||||+++..++... |.++++++...-. .+| ..
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~ 99 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSPND 99 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TSCC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccccC
Confidence 468999999999999999875432 7777777643320 000 11
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC----CCCCCHHH
Q 006458 443 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR----PGDLDSAV 518 (644)
Q Consensus 443 ~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~----~~~ld~al 518 (644)
....+..+.......+ +++|+||-+..|.. ..+ ....+..+..++..+ ...++.+|+|+.. .......+
T Consensus 100 ~~~l~~~i~~~i~~~~-~~~vVIDsls~l~~-~~~---~~~~r~~l~~l~~~l--~~~~~t~llt~~~~~~~~~~~~~~i 172 (226)
T PF06745_consen 100 LEELLSKIREAIEELK-PDRVVIDSLSALLL-YDD---PEELRRFLRALIKFL--KSRGVTTLLTSEMPSGSEDDGTFGI 172 (226)
T ss_dssp HHHHHHHHHHHHHHHT-SSEEEEETHHHHTT-SSS---GGGHHHHHHHHHHHH--HHTTEEEEEEEEESSSSSSSSSTSH
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEECHHHHhh-cCC---HHHHHHHHHHHHHHH--HHCCCEEEEEEccccCcccccccch
Confidence 1122233333333334 68999999998822 111 123455666666666 3344555555542 12233344
Q ss_pred hc-ccceeEecCC
Q 006458 519 AD-RIDEVLEFPL 530 (644)
Q Consensus 519 ~~-Rfd~~i~~~~ 530 (644)
.. -+|-+|.+..
T Consensus 173 ~~~l~D~vI~L~~ 185 (226)
T PF06745_consen 173 EHYLADGVIELRY 185 (226)
T ss_dssp HHHHSSEEEEEEE
T ss_pred hhhcccEEEEEEE
Confidence 44 4666666643
No 346
>PRK14531 adenylate kinase; Provisional
Probab=97.40 E-value=0.0011 Score=64.57 Aligned_cols=30 Identities=40% Similarity=0.675 Sum_probs=26.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|+||||+|||++++.||..+|.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 599999999999999999999998776543
No 347
>PRK13947 shikimate kinase; Provisional
Probab=97.40 E-value=0.00015 Score=69.61 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.+|+|.|+||||||++++.||+.+|.+|+..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999987654
No 348
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00022 Score=69.39 Aligned_cols=32 Identities=47% Similarity=0.883 Sum_probs=25.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 435 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~ 435 (644)
.|+|.||||+||||+|+.|++.++. ..++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhH
Confidence 4899999999999999999999554 4454333
No 349
>PRK06762 hypothetical protein; Provisional
Probab=97.39 E-value=0.00065 Score=64.93 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=28.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
.-++|+|+||+||||+|+.|++.++..++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 458999999999999999999999766666654
No 350
>PRK00625 shikimate kinase; Provisional
Probab=97.38 E-value=0.00015 Score=70.33 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=28.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
+|+|+|+||+|||++++.||+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999998775
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.38 E-value=0.002 Score=70.81 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=47.9
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC-----------------C----chhHHHHHHHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP-----------------L----GPQAVTKIHQLFDW 453 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~-----------------~----g~~~~~~l~~~f~~ 453 (644)
.++..++|+||+|+||||++..||..+ |..+..+++..+.. + +.+........+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 345779999999999999999999877 67777777654321 0 01112222333444
Q ss_pred HHhcCCCeEEEEeccchh
Q 006458 454 AKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 454 a~~~~~~~VL~IDEid~l 471 (644)
++.. .+.+||||-...+
T Consensus 178 ~~~~-~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKE-NFDIIIVDTSGRH 194 (429)
T ss_pred HHhC-CCCEEEEECCCCC
Confidence 4432 3789999988764
No 352
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0024 Score=69.71 Aligned_cols=102 Identities=24% Similarity=0.310 Sum_probs=57.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCC--------------CchhHHHHHHHHHHHHHhcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAP--------------LGPQAVTKIHQLFDWAKKSKRGLL 462 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~--------------~g~~~~~~l~~~f~~a~~~~~~~V 462 (644)
..++|.||+|+||||++..||..+ |..+..+++..+.. +.......+..+...+.. ..+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~ 302 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSEL 302 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCE
Confidence 458999999999999999998754 45566666544311 111111223344444443 44788
Q ss_pred EEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-CCCCEEEEEEeCC
Q 006458 463 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSKDIVLALATNR 510 (644)
Q Consensus 463 L~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-~~~~viiI~ttN~ 510 (644)
||||=...... ....-..+..++...+. .+..+++|+.++.
T Consensus 303 VLIDTaGr~~r-------d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 303 ILIDTAGYSHR-------NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred EEEeCCCCCcc-------CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 99997654211 11233344555544432 2445666665444
No 353
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.37 E-value=0.00086 Score=71.05 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCCCc-cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC----------------CchhHHHHHHHHHHHHHh
Q 006458 397 NAPFR-NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP----------------LGPQAVTKIHQLFDWAKK 456 (644)
Q Consensus 397 ~~p~~-~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~----------------~g~~~~~~l~~~f~~a~~ 456 (644)
|.|.. .++|+||||||||+||..++... |.++++++...... ...........+.....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 44443 58899999999999998876554 56666665432100 001111222233333344
Q ss_pred cCCCeEEEEeccchhhhc
Q 006458 457 SKRGLLLFIDEADAFLCE 474 (644)
Q Consensus 457 ~~~~~VL~IDEid~l~~~ 474 (644)
...+++||||-+..|.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 555889999999998753
No 354
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.36 E-value=0.0012 Score=65.45 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=53.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHH-----cCCCeE-------------EEeCCCCCCCc----hhHHHHHHHHHHHHHhcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARK-----SGLDYA-------------LMTGGDVAPLG----PQAVTKIHQLFDWAKKSK 458 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~-----l~~~~~-------------~i~~~~l~~~g----~~~~~~l~~~f~~a~~~~ 458 (644)
..++|+||+|+|||++.+.|+.. .|.++- .++..+-...+ ......+..+++.+.. .
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~-~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK-G 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccC-C
Confidence 45899999999999999999743 344321 11111100011 1112334455544432 2
Q ss_pred CCeEEEEeccchhhhccccCcCCHHHH-HHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 459 RGLLLFIDEADAFLCERNKTYMSEAQR-SALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 459 ~~~VL~IDEid~l~~~r~~~~~~~~~~-~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
.|.+|++||.-.-+ +.... ..+..++..+.. .+..+|++|..++
T Consensus 105 ~p~llllDEp~~gl--------D~~~~~~l~~~ll~~l~~--~~~tiiivTH~~~ 149 (199)
T cd03283 105 EPVLFLLDEIFKGT--------NSRERQAASAAVLKFLKN--KNTIGIISTHDLE 149 (199)
T ss_pred CCeEEEEecccCCC--------CHHHHHHHHHHHHHHHHH--CCCEEEEEcCcHH
Confidence 58899999975421 11222 233445555432 2456666776644
No 355
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.0021 Score=65.80 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.3
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.++++||+|||||++|.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999885
No 356
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.00092 Score=66.41 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=44.0
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC--------CCeEEEeC-CCCCC--Cch--hHHH---------HHHHHHHHHHh
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG--------LDYALMTG-GDVAP--LGP--QAVT---------KIHQLFDWAKK 456 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~--------~~~~~i~~-~~l~~--~g~--~~~~---------~l~~~f~~a~~ 456 (644)
.+-|.|+.||||||||++.+-||+.+. ..+..++. +++.. .|. ...+ --...+-.+.+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 345799999999999999999998762 33444442 22211 000 0000 01222333555
Q ss_pred cCCCeEEEEeccchh
Q 006458 457 SKRGLLLFIDEADAF 471 (644)
Q Consensus 457 ~~~~~VL~IDEid~l 471 (644)
+-.|.|+++|||...
T Consensus 216 sm~PEViIvDEIGt~ 230 (308)
T COG3854 216 SMSPEVIIVDEIGTE 230 (308)
T ss_pred hcCCcEEEEeccccH
Confidence 555899999999873
No 357
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.35 E-value=0.0025 Score=64.69 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=24.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
..++|+||||||||+++..++..+ |...++++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 358999999999999986554433 555666653
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.34 E-value=0.0041 Score=72.08 Aligned_cols=120 Identities=22% Similarity=0.334 Sum_probs=75.4
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc--CCCeEEEe--CCCC---------
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS--GLDYALMT--GGDV--------- 436 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l--~~~~~~i~--~~~l--------- 436 (644)
....|..|.+...+. ++..++-+||+-|.|.|||+++-.++... +..+..++ .++-
T Consensus 18 ~~~~v~R~rL~~~L~-----------~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRPRLLDRLR-----------RANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccHHHHHHHh-----------cCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHH
Confidence 455555555555542 23344669999999999999999998633 33444443 3332
Q ss_pred --------CCCchh------------HHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 437 --------APLGPQ------------AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 437 --------~~~g~~------------~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
...+.. ....+..+|.....+..|+.|||||.+.+. .+.....++.|++.
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~-- 156 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKH-- 156 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHh--
Confidence 111111 223456667777777778999999999862 23455566666544
Q ss_pred CCCCCEEEEEEeCCC
Q 006458 497 DQSKDIVLALATNRP 511 (644)
Q Consensus 497 ~~~~~viiI~ttN~~ 511 (644)
.+.++.+|+||...
T Consensus 157 -~P~~l~lvv~SR~r 170 (894)
T COG2909 157 -APENLTLVVTSRSR 170 (894)
T ss_pred -CCCCeEEEEEeccC
Confidence 46788888888653
No 359
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.34 E-value=0.0028 Score=62.02 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=71.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEe---CC---------------------C-CCCC---chhHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT---GG---------------------D-VAPL---GPQAVTKIHQ 449 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~---~~---------------------~-l~~~---g~~~~~~l~~ 449 (644)
..+++||++|.|||+.|-.+|-.. |.++..+- +. . +... ..........
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 579999999999999999987654 44433321 11 0 0000 0111233444
Q ss_pred HHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeE
Q 006458 450 LFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVL 526 (644)
Q Consensus 450 ~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i 526 (644)
.+..++. +..+++|+|||+-..+.-. ..+ ...++..+...+.++-||+|... .++.|+.+.|.+-
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~g---li~------~eevi~~L~~rp~~~evVlTGR~---~p~~Lie~ADlVT 170 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYG---YLD------VEEVLEALNARPGMQHVVITGRG---APRELIEAADLVT 170 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCC---Ccc------HHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCchhe
Confidence 5555543 5678999999998753321 111 22234444556778889999764 5688888887777
Q ss_pred ecCC
Q 006458 527 EFPL 530 (644)
Q Consensus 527 ~~~~ 530 (644)
++..
T Consensus 171 Em~~ 174 (191)
T PRK05986 171 EMRP 174 (191)
T ss_pred eccc
Confidence 6654
No 360
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0029 Score=59.94 Aligned_cols=111 Identities=24% Similarity=0.321 Sum_probs=61.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC--eEEEeCCCCCC---------------CchhHHHHHHHHHHHHHhcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAP---------------LGPQAVTKIHQLFDWAKKSKRGLLL 463 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~--~~~i~~~~l~~---------------~g~~~~~~l~~~f~~a~~~~~~~VL 463 (644)
..+.|.||+|+|||+|.+.|+..+... -+.+++..+.. +.++....+ .+..+... .|.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~--~l~~~l~~-~~~i~ 102 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRV--ALARALLL-NPDLL 102 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHH--HHHHHHhc-CCCEE
Confidence 458999999999999999999876422 23333322211 111111111 12223223 37899
Q ss_pred EEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcc-cceeEecC
Q 006458 464 FIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADR-IDEVLEFP 529 (644)
Q Consensus 464 ~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~R-fd~~i~~~ 529 (644)
++||...= .+......+..++..+... +..+|++|...+ .... +|.++.+.
T Consensus 103 ilDEp~~~--------lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~-----~~~~~~d~i~~l~ 154 (157)
T cd00267 103 LLDEPTSG--------LDPASRERLLELLRELAEE--GRTVIIVTHDPE-----LAELAADRVIVLK 154 (157)
T ss_pred EEeCCCcC--------CCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH-----HHHHhCCEEEEEe
Confidence 99999762 2334555666666555332 345566665533 3333 46666554
No 361
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.33 E-value=0.0016 Score=70.22 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..||+||||||||+|++.|++...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Confidence 489999999999999999998764
No 362
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.33 E-value=0.00084 Score=68.81 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=28.3
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 436 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l 436 (644)
|+|+|+||+|||++|+.|++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7999999999999999999987 466777765444
No 363
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.32 E-value=0.0029 Score=61.87 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=52.7
Q ss_pred EEEecCCCCChHHHHHHHHH-----HcCCCe--------------EEEeCCCCCCCc-hhHHHHHHHHHHHHHhcCCCeE
Q 006458 403 MLFYGPPGTGKTMAARELAR-----KSGLDY--------------ALMTGGDVAPLG-PQAVTKIHQLFDWAKKSKRGLL 462 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~-----~l~~~~--------------~~i~~~~l~~~g-~~~~~~l~~~f~~a~~~~~~~V 462 (644)
++|+||.|+|||++.+.++- +.|.++ ..+...+....+ +.....+..+...+.....+.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 78999999999999999973 234321 111111111111 1122233333333333345889
Q ss_pred EEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 463 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 463 L~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
+++||...-+. .......+..++..+... .+..+|++|...
T Consensus 82 lllDEp~~g~d-------~~~~~~~~~~~l~~l~~~-~~~~iii~TH~~ 122 (185)
T smart00534 82 VLLDELGRGTS-------TYDGVAIAAAVLEYLLEK-IGALTLFATHYH 122 (185)
T ss_pred EEEecCCCCCC-------HHHHHHHHHHHHHHHHhc-CCCeEEEEecHH
Confidence 99999976211 112333445555554322 234566677654
No 364
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.31 E-value=0.00082 Score=63.41 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=28.0
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 435 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~ 435 (644)
++|+|+||+|||++++.|+..+ +.+++.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999999998 66677776543
No 365
>PRK03839 putative kinase; Provisional
Probab=97.31 E-value=0.00019 Score=69.69 Aligned_cols=31 Identities=39% Similarity=0.621 Sum_probs=27.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.|+|.|+||+||||+++.||+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999998887653
No 366
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.31 E-value=0.051 Score=59.54 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=72.1
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC----CCCCCEEEEEEeCCC------CCC---------------
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRP------GDL--------------- 514 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~----~~~~~viiI~ttN~~------~~l--------------- 514 (644)
|.||+|||++.+..-+... .-...++.+++.++ ....++.||++...- ..+
T Consensus 240 GLlI~lDE~e~l~kl~~~~----~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~ 315 (416)
T PF10923_consen 240 GLLILLDELENLYKLRNDQ----AREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFF 315 (416)
T ss_pred ceEEEEechHHHHhcCChH----HHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccc
Confidence 5689999999986543221 12334444444443 234567776664321 111
Q ss_pred -CHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC-----
Q 006458 515 -DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE----- 588 (644)
Q Consensus 515 -d~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~----- 588 (644)
++.+.+....+|.+++.+.++...++....+-+....+.. ..++++.+..++..+.
T Consensus 316 ~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~------------------~~v~d~~l~~~~~~~~~r~G~ 377 (416)
T PF10923_consen 316 ADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYE------------------SRVDDEELKAFAQHVAGRLGG 377 (416)
T ss_pred ccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCC------------------CCCCHHHHHHHHHHHHhccCc
Confidence 2233333456888999999999988887766554322111 2478888888876653
Q ss_pred --CCcHHHHHHHHHHHHHHHh
Q 006458 589 --GFSGREIAKLMASVQAAVY 607 (644)
Q Consensus 589 --G~SgrdI~~L~~~~~aa~~ 607 (644)
+.++|.+-+-...+.....
T Consensus 378 ~~~~tPR~~ik~fv~~Ld~~~ 398 (416)
T PF10923_consen 378 DVFVTPREFIKDFVDVLDILE 398 (416)
T ss_pred ccccCHHHHHHHHHHHHHHHH
Confidence 3455655554434444443
No 367
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.30 E-value=0.00022 Score=66.94 Aligned_cols=31 Identities=35% Similarity=0.571 Sum_probs=27.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
+|+|+||||+|||++++.|+..+|.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998877554
No 368
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.28 E-value=0.00027 Score=65.49 Aligned_cols=24 Identities=42% Similarity=0.927 Sum_probs=22.6
Q ss_pred EEEecCCCCChHHHHHHHHHHcCC
Q 006458 403 MLFYGPPGTGKTMAARELARKSGL 426 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~ 426 (644)
|+|+|||||||||+++.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 799999999999999999999883
No 369
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.27 E-value=0.0013 Score=72.65 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=58.0
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeE-EEeCCCCCC-------
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYA-LMTGGDVAP------- 438 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~-~i~~~~l~~------- 438 (644)
..+|+++...+.....+..++ ..|.+-+|++||+|+|||++..++.+.++.+.. +++..|...
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~---------~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~ 304 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLL---------NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGIN 304 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHH---------hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcc
Confidence 335777777777777776554 335566999999999999999999998865543 333333221
Q ss_pred -------CchhHHHHHHHHHHHHHhcCCCeEEEEeccch
Q 006458 439 -------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 470 (644)
Q Consensus 439 -------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~ 470 (644)
.|-.... .+....+.. |+||+|.||-.
T Consensus 305 Q~qVN~k~gltfa~----~LRa~LRqD-PDvImVGEIRD 338 (500)
T COG2804 305 QVQVNPKIGLTFAR----ALRAILRQD-PDVIMVGEIRD 338 (500)
T ss_pred eeecccccCCCHHH----HHHHHhccC-CCeEEEeccCC
Confidence 1211222 233344444 89999999965
No 370
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.27 E-value=0.0021 Score=69.24 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=21.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+.+.|.|+||+|+||||+.-.||..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 35679999999999998777776655
No 371
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.27 E-value=0.0033 Score=65.37 Aligned_cols=107 Identities=20% Similarity=0.220 Sum_probs=79.0
Q ss_pred CCCCEEEEEEe--CCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCC
Q 006458 498 QSKDIVLALAT--NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 575 (644)
Q Consensus 498 ~~~~viiI~tt--N~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (644)
..+.+++|++| |..-.++++|+||+ .++.|.+++.++...+++..+...... +. .. ..+
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~-~~----------------~~-~~i 65 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVL-AK----------------HK-FKI 65 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhcc-CC----------------cC-CCc
Confidence 45678888855 55668999999999 999999999999999999998752110 00 00 138
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-C--CCCCccCHHHHHHHHHHHH
Q 006458 576 TDDILMEAAAKTEGFSGREIAKLMASVQAAVY-G--SENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 576 ~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~-~--~~~~~lt~~~~~~al~~~~ 627 (644)
+++.++.|+..+.| |.+..++.+..+.. . .+...||.+++.+++....
T Consensus 66 ~~~al~~ia~~a~G----DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~ 116 (300)
T PRK14700 66 DDGLYNAMHNYNEG----DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETS 116 (300)
T ss_pred CHHHHHHHHHhcCC----HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHH
Confidence 99999999999877 77777766666443 1 1123499999999887653
No 372
>PRK13949 shikimate kinase; Provisional
Probab=97.26 E-value=0.00025 Score=68.48 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=28.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.+|+|+||||+|||++++.||+.++.+++.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999998887654
No 373
>PRK14532 adenylate kinase; Provisional
Probab=97.25 E-value=0.00024 Score=69.41 Aligned_cols=30 Identities=30% Similarity=0.658 Sum_probs=26.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+++|.||||+||||+++.||+.+|..++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998766543
No 374
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.25 E-value=0.0017 Score=64.16 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=59.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC---Cc--hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccc
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LG--PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERN 476 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~---~g--~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~ 476 (644)
.++|+||+|||||.++-.+|+.+|.|++..+.-.... .| ......+. . -.=++|||-..- .
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~---------~-~~RiyL~~r~l~----~ 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELK---------G-TRRIYLDDRPLS----D 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGT---------T--EEEES----GG----G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHc---------c-cceeeecccccc----C
Confidence 4799999999999999999999999999988654432 11 11111111 1 112778865431 1
Q ss_pred cCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcc-----cc-eeEecCCCCHHHHHHHHHHHHHHHhh
Q 006458 477 KTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADR-----ID-EVLEFPLPGQEERFKLLKLYLDKYIA 549 (644)
Q Consensus 477 ~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~R-----fd-~~i~~~~p~~~er~~Il~~~l~~~~~ 549 (644)
+.. ........++..+......-.+|+-.-..+.+..=..++ |. .+..++.|+.+.-..-.+....+...
T Consensus 69 G~i---~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 69 GII---NAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp -S-----HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred CCc---CHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 111 222344445554443222334444332222111111121 21 45677889988877777777776654
No 375
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.25 E-value=0.0013 Score=68.24 Aligned_cols=26 Identities=42% Similarity=0.558 Sum_probs=23.5
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
+.+++|+||||+|||++.+.++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 36899999999999999999998873
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.24 E-value=0.00046 Score=71.58 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC---eEEEeC-CCCCC--
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTG-GDVAP-- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---~~~i~~-~~l~~-- 438 (644)
....+++++...+.....+..++...... .++++|.||+|+|||++.+++...+... ++.+.. .++..
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v~~------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~ 171 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAVRG------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG 171 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCHHT------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC
T ss_pred cccccHhhccCchhhHHHHHHHHhhcccc------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc
Confidence 34457888877766666665554433111 2569999999999999999999987544 333321 11110
Q ss_pred -----Cch-hHHHHHHHHHHHHHhcCCCeEEEEeccch
Q 006458 439 -----LGP-QAVTKIHQLFDWAKKSKRGLLLFIDEADA 470 (644)
Q Consensus 439 -----~g~-~~~~~l~~~f~~a~~~~~~~VL~IDEid~ 470 (644)
+.. .....+..++..+.+.+ |++|+|+|+-.
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~LR~~-pD~iiigEiR~ 208 (270)
T PF00437_consen 172 PNQIQIQTRRDEISYEDLLKSALRQD-PDVIIIGEIRD 208 (270)
T ss_dssp SSEEEEEEETTTBSHHHHHHHHTTS---SEEEESCE-S
T ss_pred cceEEEEeecCcccHHHHHHHHhcCC-CCcccccccCC
Confidence 111 12334566677777666 89999999975
No 377
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.24 E-value=0.0018 Score=65.60 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
..++++||||||||+++..++... |.++++++.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 458889999999999999996542 556666553
No 378
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.23 E-value=0.00095 Score=60.10 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=20.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
++++++||+|+|||+++-.++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888876665
No 379
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.23 E-value=0.00027 Score=68.64 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=24.7
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
|+|+|||||||||+|+.||..+|..++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7999999999999999999999865443
No 380
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.23 E-value=0.0017 Score=67.40 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=43.0
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCC-----CCchhHHHHHHHHHHHHHh--cCCCeEEEEeccchhh
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA-----PLGPQAVTKIHQLFDWAKK--SKRGLLLFIDEADAFL 472 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~-----~~g~~~~~~l~~~f~~a~~--~~~~~VL~IDEid~l~ 472 (644)
|+|+|.||+|||++|+.|...+ +..++.++...+. +........++..+..+.. .....||++|+..++
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi- 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI- 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S-
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH-
Confidence 8999999999999999998875 5667776633321 1122233333333322221 123579999999875
Q ss_pred hccccCcCCHHHHHHHHHHHHHh
Q 006458 473 CERNKTYMSEAQRSALNALLFRT 495 (644)
Q Consensus 473 ~~r~~~~~~~~~~~~l~~lL~~~ 495 (644)
..++.-+..+-...
T Consensus 83 ---------Kg~RYelyclAr~~ 96 (270)
T PF08433_consen 83 ---------KGMRYELYCLARAY 96 (270)
T ss_dssp ---------HHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHc
Confidence 24555565555444
No 381
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.23 E-value=0.0031 Score=60.33 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=55.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeCCCCCCCc----------h---hHHHHH-HHHHHHHHhcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAPLG----------P---QAVTKI-HQLFDWAKKSKRGLLLF 464 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~~~l~~~g----------~---~~~~~l-~~~f~~a~~~~~~~VL~ 464 (644)
..+.|.||+|+|||+|.+.|+..... --+.+++.++.... . -+.+.. +-.+..+.-. .|.||+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~-~p~ill 105 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR-NARLLI 105 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc-CCCEEE
Confidence 45899999999999999999877521 12333332221110 0 011111 1122223333 478999
Q ss_pred EeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 465 IDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 465 IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
+||-..- .+...+..+..++..+... +..+|++|..+
T Consensus 106 lDEP~~~--------LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~ 142 (163)
T cd03216 106 LDEPTAA--------LTPAEVERLFKVIRRLRAQ--GVAVIFISHRL 142 (163)
T ss_pred EECCCcC--------CCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 9998652 2445566676776666322 34455555543
No 382
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.23 E-value=0.0011 Score=72.06 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 377 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 377 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
++....+..++..... ..+.++++.||.|||||++.++|...+.
T Consensus 4 ~eQ~~~~~~v~~~~~~-----~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN-----EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHHHc-----cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 3344444444444322 2335799999999999999999988773
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.22 E-value=0.0048 Score=59.35 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=28.1
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 436 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l 436 (644)
++|+||||+|||+++..++..+ |..++.+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 7899999999999999998875 666777776543
No 384
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.19 E-value=0.0012 Score=71.30 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+++.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 385
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.19 E-value=0.0056 Score=59.06 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=71.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEE---eCC----CC----------CCCc----------hhHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALM---TGG----DV----------APLG----------PQAVTKIHQLF 451 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i---~~~----~l----------~~~g----------~~~~~~l~~~f 451 (644)
-+.+|+++|.|||+.|-.+|-.. |.+++.+ .+. +. ...+ ..........+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 48899999999999999987664 5555433 221 10 0000 01112244455
Q ss_pred HHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEec
Q 006458 452 DWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEF 528 (644)
Q Consensus 452 ~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~ 528 (644)
..++. ...+++|+|||+-..+.-. ..+ ...++..+...+.++-+|+|... .++.|+...|.+-++
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~g---li~------~~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYG---YLD------VEEVVEALQERPGHQHVIITGRG---CPQDLLELADLVTEM 154 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCC---CcC------HHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCceeeee
Confidence 55443 5568999999998653221 111 12344444557778889999765 478888888877776
Q ss_pred CC
Q 006458 529 PL 530 (644)
Q Consensus 529 ~~ 530 (644)
..
T Consensus 155 ~~ 156 (173)
T TIGR00708 155 RP 156 (173)
T ss_pred cc
Confidence 54
No 386
>PRK13948 shikimate kinase; Provisional
Probab=97.18 E-value=0.0004 Score=67.83 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
++.+|+|.|++|+|||++++.||+.+|.+|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 5578999999999999999999999999998665
No 387
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0018 Score=72.51 Aligned_cols=68 Identities=28% Similarity=0.366 Sum_probs=41.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC------------Cc-----hhHHHHHHHHHHHHHhcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP------------LG-----PQAVTKIHQLFDWAKKSK 458 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~------------~g-----~~~~~~l~~~f~~a~~~~ 458 (644)
..+.|+||+|+|||+++..|+..+ +..+..++...+.. ++ ......+... .....
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~a---L~~l~ 427 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL---LERLR 427 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHH---HHHhc
Confidence 568999999999999999998754 34555555433211 00 0111122233 33334
Q ss_pred CCeEEEEeccchh
Q 006458 459 RGLLLFIDEADAF 471 (644)
Q Consensus 459 ~~~VL~IDEid~l 471 (644)
.+.+||||.....
T Consensus 428 ~~DLVLIDTaG~s 440 (559)
T PRK12727 428 DYKLVLIDTAGMG 440 (559)
T ss_pred cCCEEEecCCCcc
Confidence 4789999999863
No 388
>PRK14527 adenylate kinase; Provisional
Probab=97.16 E-value=0.0019 Score=63.42 Aligned_cols=31 Identities=39% Similarity=0.689 Sum_probs=26.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..++|+||||+|||++++.|+..+|...+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 4599999999999999999999998765543
No 389
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.16 E-value=0.00071 Score=71.77 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 376 HPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 376 ~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.++-.+.+..++.........-.|..+|+|+|+||||||++++.||..+|.+|+.++
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455555555555554444444456678999999999999999999999999998543
No 390
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0011 Score=63.30 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=33.1
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 436 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l 436 (644)
.+..+.|+|.+|+||||+|.+|.+.| |...+.++|..+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 44579999999999999999999886 888999988765
No 391
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.15 E-value=0.00087 Score=66.36 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=39.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCC----CeEEEeCC-CCC-----------CCchhHHHHHHHHHHHHHhcCCCeEEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGL----DYALMTGG-DVA-----------PLGPQAVTKIHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~----~~~~i~~~-~l~-----------~~g~~~~~~l~~~f~~a~~~~~~~VL~I 465 (644)
.++|+||+|+||||++++++..+.. .++.+... ++. ..+.. ...+...+..+.+.. |.+|++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~-~~~~~~~i~~aLr~~-pd~ii~ 80 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLD-TLSFENALKAALRQD-PDVILV 80 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCC-ccCHHHHHHHHhcCC-cCEEEE
Confidence 4899999999999999999888742 22222111 110 01111 112344445555554 889999
Q ss_pred eccc
Q 006458 466 DEAD 469 (644)
Q Consensus 466 DEid 469 (644)
||+-
T Consensus 81 gEir 84 (198)
T cd01131 81 GEMR 84 (198)
T ss_pred cCCC
Confidence 9984
No 392
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.14 E-value=0.0038 Score=68.32 Aligned_cols=195 Identities=18% Similarity=0.258 Sum_probs=100.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCC-----CeEEEEeccchhhhcc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKR-----GLLLFIDEADAFLCER 475 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~-----~~VL~IDEid~l~~~r 475 (644)
-|++=.||.|||||++=+-|.. ..+.++|+.... -.+|-....... .++|.|||+..+.-+.
T Consensus 209 ~NliELgPrGTGKS~vy~eiSp----~~~liSGG~~T~---------A~LFyn~~~~~~GlV~~~D~VafDEv~~i~f~d 275 (457)
T PF13337_consen 209 YNLIELGPRGTGKSYVYKEISP----YGILISGGQVTV---------AKLFYNMSTGQIGLVGRWDVVAFDEVAGIKFKD 275 (457)
T ss_pred cceEEEcCCCCCceeehhhcCc----ccEEEECCCcch---------HHheeeccCCcceeeeeccEEEEEeccCcccCC
Confidence 4799999999999998654433 345566655421 112211221111 3689999999862211
Q ss_pred ccCcCCHHHHHHHHHHHHHh----C--CCCCCEEEEEEeCCCC-----------------CC-CHHHhcccceeE---ec
Q 006458 476 NKTYMSEAQRSALNALLFRT----G--DQSKDIVLALATNRPG-----------------DL-DSAVADRIDEVL---EF 528 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~----~--~~~~~viiI~ttN~~~-----------------~l-d~al~~Rfd~~i---~~ 528 (644)
.+.. .++...+..- + .-..+.-+|+..|... .+ |.||++||...+ ++
T Consensus 276 -----~d~i-~imK~YMesG~fsRG~~~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~iPGWei 349 (457)
T PF13337_consen 276 -----KDEI-QIMKDYMESGSFSRGKEEINADASMVFVGNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYIPGWEI 349 (457)
T ss_pred -----hHHH-HHHHHHHhccceeecccccccceeEEEEcCcCCcchhccccchhhhhcCHHHHHHHHHhHhheeccCccc
Confidence 1111 2333332211 0 1223444555555322 11 678888885544 34
Q ss_pred CCCCHHHHH---HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHH---HHH
Q 006458 529 PLPGQEERF---KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM---ASV 602 (644)
Q Consensus 529 ~~p~~~er~---~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~---~~~ 602 (644)
|....+... -++--|+...... +.+ .+. ...++.......++++||...+- ..+
T Consensus 350 Pk~~~e~~t~~~gl~~Dy~aE~l~~-----------LR~--------~~~-~~~~~~~~~lg~~~~~RD~~AV~kt~Sgl 409 (457)
T PF13337_consen 350 PKIRPEMFTNGYGLIVDYFAEILHE-----------LRK--------QSY-SDAVDKYFKLGSNLSQRDTKAVKKTVSGL 409 (457)
T ss_pred cccCHHHccCCceeeHHHHHHHHHH-----------HHH--------HHH-HHHHHhhEeeCCCcchhhHHHHHHHHHHH
Confidence 444442221 1222222222110 000 001 12344445555678888877654 444
Q ss_pred HHHHhCCCCCccCHHHHHHHHHHHHHhHHHHHHh
Q 006458 603 QAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKL 636 (644)
Q Consensus 603 ~aa~~~~~~~~lt~~~~~~al~~~~~~~~~~~~~ 636 (644)
.-..| .++.+|.++++.+++.++-..++-..+
T Consensus 410 lKLL~--P~~~~~~ee~~~~l~~A~e~R~rVkeQ 441 (457)
T PF13337_consen 410 LKLLF--PHGEFTKEELEECLRPALEMRRRVKEQ 441 (457)
T ss_pred HHhhC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 448899999999999998766544443
No 393
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.14 E-value=0.00033 Score=67.77 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
+.|+|.||||+|||++++.|+..++.+++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 459999999999999999999998877765543
No 394
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.13 E-value=0.0029 Score=56.53 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 006458 403 MLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~ 423 (644)
|+|.|+||+|||+|.++|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.13 E-value=0.0037 Score=62.58 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=25.8
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
|+++||||+|||++++.||..+|..++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998665543
No 396
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00034 Score=67.04 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.+++|+|++|+||||+.+.||+.++.+|+-++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998765
No 397
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.12 E-value=0.00094 Score=64.11 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=18.6
Q ss_pred ccEEEecCCCCChHH-HHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTM-AARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~-lAkaLA~~l 424 (644)
.++++.||+|||||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 469999999999999 555555544
No 398
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.12 E-value=0.0073 Score=66.69 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=46.3
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCCC-------------------c--hhHHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPL-------------------G--PQAVTKIHQLFDW 453 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~~-------------------g--~~~~~~l~~~f~~ 453 (644)
++..++|+||||+|||+++..||..+ |..+..+++..+.+. + ..........+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45689999999999999998888763 566777776544220 0 0111222334444
Q ss_pred HHhcCCCeEEEEeccchh
Q 006458 454 AKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 454 a~~~~~~~VL~IDEid~l 471 (644)
+... .+.+||||-...+
T Consensus 178 ~~~~-~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKEN-GFDVVIVDTAGRL 194 (428)
T ss_pred HHhc-CCCEEEEeCCCcc
Confidence 4333 3679999988764
No 399
>PRK06217 hypothetical protein; Validated
Probab=97.12 E-value=0.00045 Score=67.40 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.|+|.|+||+||||+++.|++.+|.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876554
No 400
>PRK14530 adenylate kinase; Provisional
Probab=97.12 E-value=0.00042 Score=69.45 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=27.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|.||||+||||+++.||+.+|.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999776644
No 401
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.11 E-value=0.0038 Score=61.71 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=29.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 435 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~ 435 (644)
.+..+.|+|+||+|||++++.|+..+ |...+.+++..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 44579999999999999999999986 45566676544
No 402
>PHA00350 putative assembly protein
Probab=97.11 E-value=0.0011 Score=71.92 Aligned_cols=116 Identities=21% Similarity=0.293 Sum_probs=65.2
Q ss_pred EEEecCCCCChHHHHHH--HH--HHcCCCeEEEeCCCCCC------Cch---------------hHHHHHHHHHHHHHhc
Q 006458 403 MLFYGPPGTGKTMAARE--LA--RKSGLDYALMTGGDVAP------LGP---------------QAVTKIHQLFDWAKKS 457 (644)
Q Consensus 403 iLL~GppGtGKT~lAka--LA--~~l~~~~~~i~~~~l~~------~g~---------------~~~~~l~~~f~~a~~~ 457 (644)
.|++|.||+|||..+-. +- -..|++++. |...+.. ++. .........|.| .
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w---~ 79 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSW---R 79 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhcccccc---C
Confidence 68999999999987765 33 333665542 3221210 000 000111122222 2
Q ss_pred CCCeEEEEeccchhhhccccCcC--------CH------HHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccc
Q 006458 458 KRGLLLFIDEADAFLCERNKTYM--------SE------AQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRID 523 (644)
Q Consensus 458 ~~~~VL~IDEid~l~~~r~~~~~--------~~------~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd 523 (644)
..+++|||||+..+++.+....+ .+ ....-+..++... .+.+.=||++|..+..|+..++.++.
T Consensus 80 p~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~H--RH~G~DIiliTQ~~~~Id~~iR~lvE 157 (399)
T PHA00350 80 PRGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRH--RHYNWDIILLTPNIRKIHSDIRAMIE 157 (399)
T ss_pred CCCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHh--cccCceEEEEeCCHHHhhHHHHHhhh
Confidence 35789999999999987644110 00 0011222233222 45567788889999999999988765
Q ss_pred e
Q 006458 524 E 524 (644)
Q Consensus 524 ~ 524 (644)
.
T Consensus 158 ~ 158 (399)
T PHA00350 158 M 158 (399)
T ss_pred h
Confidence 4
No 403
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.11 E-value=0.0047 Score=59.14 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 377 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 377 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+...+.+..+....... ...+++||.+|+|+|||.++-.++..+..+++.+
T Consensus 6 ~~Q~~ai~~i~~~~~~~----~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~ 56 (184)
T PF04851_consen 6 PYQQEAIARIINSLENK----KEERRVLLNAPTGSGKTIIALALILELARKVLIV 56 (184)
T ss_dssp HHHHHHHHHHHHHHHTT----SGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHHHHHHHhc----CCCCCEEEEECCCCCcChhhhhhhhccccceeEe
Confidence 44455555555544333 2235799999999999999998766664454444
No 404
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.11 E-value=0.00041 Score=67.79 Aligned_cols=29 Identities=45% Similarity=0.737 Sum_probs=25.9
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
|+|+||||+|||++++.||..+|..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998766544
No 405
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.11 E-value=0.004 Score=61.60 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.4
Q ss_pred ccEEEecCCCCChHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELA 421 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA 421 (644)
+.++|+||+|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 406
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.10 E-value=0.00044 Score=64.18 Aligned_cols=30 Identities=40% Similarity=0.625 Sum_probs=27.8
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
|+|.|+||||||++++.|+..+|.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999987665
No 407
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.10 E-value=0.0062 Score=62.53 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+..+|+|.|.+|+|||+|+.+|...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4467999999999999999999764
No 408
>PLN02674 adenylate kinase
Probab=97.09 E-value=0.0044 Score=63.28 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=27.3
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
+...|+|.||||+||||+++.||..+|..++.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 34579999999999999999999999865543
No 409
>PRK13808 adenylate kinase; Provisional
Probab=97.09 E-value=0.0027 Score=67.55 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=26.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|+||||+|||++++.|+..+|..++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 389999999999999999999998766554
No 410
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00045 Score=65.06 Aligned_cols=28 Identities=46% Similarity=0.681 Sum_probs=26.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
|-+.|||||||||+++.||+++|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999874
No 411
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.08 E-value=0.0042 Score=63.08 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=26.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~ 433 (644)
..++|.|+||+|||+++..++... |.++++++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 368999999999999999886654 777777764
No 412
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.08 E-value=0.0035 Score=60.99 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=51.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeCCCCCC------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhh
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAP------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFL 472 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~~~l~~------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~ 472 (644)
..+.|.||+|+|||||.+.|+..+.. --+.+++..+.. +.+.. .. +-.+..+.. ..|.++++||--.-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~q-rv~laral~-~~p~lllLDEPts~- 101 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQ-RVAIAAALL-RNATFYLFDEPSAY- 101 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HH-HHHHHHHHh-cCCCEEEEECCccc-
Confidence 35889999999999999999987521 122233221111 11111 11 112222222 34789999998653
Q ss_pred hccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Q 006458 473 CERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 510 (644)
Q Consensus 473 ~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~ 510 (644)
.+...+..+..++..+...... .+|++|..
T Consensus 102 -------LD~~~~~~l~~~l~~~~~~~~~-tiiivsH~ 131 (177)
T cd03222 102 -------LDIEQRLNAARAIRRLSEEGKK-TALVVEHD 131 (177)
T ss_pred -------CCHHHHHHHHHHHHHHHHcCCC-EEEEEECC
Confidence 2334455555555544322223 44455544
No 413
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00039 Score=66.22 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=27.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.++++|.||||||++++.|+ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 8898887664
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.06 E-value=0.0017 Score=69.91 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=41.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC----CeEEEeC-CCCC-----------CCchhHHHHHHHHHHHHHhcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL----DYALMTG-GDVA-----------PLGPQAVTKIHQLFDWAKKSKRGLLLF 464 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~----~~~~i~~-~~l~-----------~~g~~~~~~l~~~f~~a~~~~~~~VL~ 464 (644)
+.+||+||+|+||||+.+++...+.. .++.+.. .++. ..+.. .......+..+.+.. |++|+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~-~~~~~~~l~~~lr~~-pd~i~ 200 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLD-TLSFANALRAALRED-PDVIL 200 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCC-CcCHHHHHHHhhccC-CCEEE
Confidence 56999999999999999999887642 2222211 0110 01111 112344555565555 89999
Q ss_pred Eeccc
Q 006458 465 IDEAD 469 (644)
Q Consensus 465 IDEid 469 (644)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99995
No 415
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.06 E-value=0.0069 Score=58.68 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||+|++.|+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 458999999999999999998875
No 416
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0029 Score=63.94 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 006458 403 MLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l 424 (644)
+-|.||+|||||||.+.||...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999999765
No 417
>PRK09354 recA recombinase A; Provisional
Probab=97.05 E-value=0.0034 Score=67.23 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=47.7
Q ss_pred CCCCc-cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC------C----------chhHHHHHHHHHHHHHh
Q 006458 397 NAPFR-NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------L----------GPQAVTKIHQLFDWAKK 456 (644)
Q Consensus 397 ~~p~~-~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~------~----------g~~~~~~l~~~f~~a~~ 456 (644)
|.|.. .++||||||||||+||-.++... |...++++...-.. + ..........+.....+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 44443 58899999999999999876543 66666665433100 0 01112222333444445
Q ss_pred cCCCeEEEEeccchhhh
Q 006458 457 SKRGLLLFIDEADAFLC 473 (644)
Q Consensus 457 ~~~~~VL~IDEid~l~~ 473 (644)
...+.+|+||-+-.|.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 55688999999999875
No 418
>PTZ00121 MAEBL; Provisional
Probab=97.05 E-value=0.13 Score=62.45 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHH
Q 006458 615 DPSLFREVVDYK 626 (644)
Q Consensus 615 t~~~~~~al~~~ 626 (644)
.+..|+...++.
T Consensus 2044 EEatF~e~~e~y 2055 (2084)
T PTZ00121 2044 EEATFDEFDENY 2055 (2084)
T ss_pred hHHHHHHHHHHH
Confidence 455555555544
No 419
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.05 E-value=0.0011 Score=64.92 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=42.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeCC-CCC----C---C-------chhHHHHHHHHHHHHHhcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTGG-DVA----P---L-------GPQAVTKIHQLFDWAKKSKRGLLL 463 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~~-~l~----~---~-------g~~~~~~l~~~f~~a~~~~~~~VL 463 (644)
.+++|.||+|+|||++.++|+..+.. ..+.+... ++. . + .......+..++..+.+.. |+++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~-pd~i 104 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR-PDRI 104 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC-CCEE
Confidence 46999999999999999999988642 22222211 010 0 0 0001123445555566555 7999
Q ss_pred EEeccch
Q 006458 464 FIDEADA 470 (644)
Q Consensus 464 ~IDEid~ 470 (644)
+++|+-.
T Consensus 105 ~igEir~ 111 (186)
T cd01130 105 IVGEVRG 111 (186)
T ss_pred EEEccCc
Confidence 9999953
No 420
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.05 E-value=0.00093 Score=64.99 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
|.|+|+||+|||++++.|++ +|.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 78999999999999999999 77665443
No 421
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.04 E-value=0.00052 Score=64.37 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=24.2
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYA 429 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~ 429 (644)
++|+|+||+||||+++.|+..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 789999999999999999999876554
No 422
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.04 E-value=0.012 Score=56.82 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||+|.+.|+..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 358999999999999999999875
No 423
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.04 E-value=0.0024 Score=59.84 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=52.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC--eEEEeCC-CC---CCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD--YALMTGG-DV---APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCE 474 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~--~~~i~~~-~l---~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~ 474 (644)
..+.|.||+|+|||+|++.|+..+... -+.+++. .+ ..+.+.....+ .+..+.. .+|.|+++||-..=
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv--~laral~-~~p~illlDEP~~~--- 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRL--ALAKLLL-ENPNLLLLDEPTNH--- 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHH--HHHHHHh-cCCCEEEEeCCccC---
Confidence 458899999999999999998875311 1222221 11 11222221111 1222332 34789999998752
Q ss_pred cccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 475 RNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 475 r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
.+...+..+..++..+ . ..+|++|..+
T Consensus 101 -----LD~~~~~~l~~~l~~~----~-~til~~th~~ 127 (144)
T cd03221 101 -----LDLESIEALEEALKEY----P-GTVILVSHDR 127 (144)
T ss_pred -----CCHHHHHHHHHHHHHc----C-CEEEEEECCH
Confidence 2334455565566554 1 2455566654
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.04 E-value=0.0053 Score=60.81 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.5
Q ss_pred ccEEEecCCCCChHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELA 421 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA 421 (644)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 359999999999999999998
No 425
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.04 E-value=0.0025 Score=64.05 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=26.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---C------CCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---G------LDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~------~~~~~i~~~~ 435 (644)
..+.|+||||+|||+++..++... + ..++++++..
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 358999999999999999997653 2 4566666544
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.003 Score=73.71 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..++|+||+|+||||++..||..+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 568999999999999999998765
No 427
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.03 E-value=0.011 Score=57.31 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.4
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
.-+.|.||+|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3589999999999999999864
No 428
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.02 E-value=0.0024 Score=66.23 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC---CeEEEeC-CCCCC------
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---DYALMTG-GDVAP------ 438 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~---~~~~i~~-~~l~~------ 438 (644)
.++++-..+.....|..++.. +.+.++|.||+|+||||+.+++...+.. .++.+.. .++..
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~---------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~ 128 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEK---------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQV 128 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhc---------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEE
Confidence 456665566655555444311 2245999999999999999999877642 2444321 11110
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccch
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 470 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~ 470 (644)
+...........+..+.+.+ |++|+|+|+..
T Consensus 129 ~v~~~~~~~~~~~l~~~lR~~-PD~i~vgEiR~ 160 (264)
T cd01129 129 QVNEKAGLTFARGLRAILRQD-PDIIMVGEIRD 160 (264)
T ss_pred EeCCcCCcCHHHHHHHHhccC-CCEEEeccCCC
Confidence 11111112445555666655 89999999964
No 429
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.02 E-value=0.00051 Score=65.43 Aligned_cols=32 Identities=31% Similarity=0.674 Sum_probs=26.2
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l 436 (644)
|+|+||||||||++++.|+..++..+ +++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~--v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF--IEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE--EeCccc
Confidence 57899999999999999999998555 455444
No 430
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.02 E-value=0.0012 Score=69.55 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=44.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCC-CCC-------CC-chhHHHHHHHHHHHHHhcCCCeEEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGG-DVA-------PL-GPQAVTKIHQLFDWAKKSKRGLLLFID 466 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~-~l~-------~~-g~~~~~~l~~~f~~a~~~~~~~VL~ID 466 (644)
+++|++||+|+|||+++++|...+. ..++.+... ++. .+ .......+..++..+.+.+ |+.|++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~-pD~iivG 211 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLR-PDRIIVG 211 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCC-CCEEEEe
Confidence 5699999999999999999998862 223333211 110 00 0011114566777777766 8999999
Q ss_pred ccch
Q 006458 467 EADA 470 (644)
Q Consensus 467 Eid~ 470 (644)
|+-.
T Consensus 212 EiR~ 215 (299)
T TIGR02782 212 EVRG 215 (299)
T ss_pred ccCC
Confidence 9964
No 431
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.01 E-value=0.0017 Score=63.50 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=24.5
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
|.|+|++|||||++++.|+...+.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 78999999999999999999866665433
No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.013 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||+|.+.|+..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999999875
No 433
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.00 E-value=0.0052 Score=58.71 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+..+++||.|+|||++.++++-.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998543
No 434
>PRK13764 ATPase; Provisional
Probab=97.00 E-value=0.0013 Score=75.25 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=23.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
.++|++||||+||||++++|+..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999998875
No 435
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.00 E-value=0.0051 Score=60.67 Aligned_cols=115 Identities=21% Similarity=0.319 Sum_probs=62.5
Q ss_pred CCCCcc-EEEecCCCCChHHHHHHHHHHc---CCCeEEEe----------------------------------CCCCCC
Q 006458 397 NAPFRN-MLFYGPPGTGKTMAARELARKS---GLDYALMT----------------------------------GGDVAP 438 (644)
Q Consensus 397 ~~p~~~-iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~----------------------------------~~~l~~ 438 (644)
|-|.++ +|+-|+.|||||.++..++.-+ |..+.+++ ... ..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~-~~ 102 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEP-VN 102 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccc-cc
Confidence 345554 6778999999999999997653 33333332 111 11
Q ss_pred CchhH-HHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-CCCCEEEEEEeCCCCCCCH
Q 006458 439 LGPQA-VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 439 ~g~~~-~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-~~~~viiI~ttN~~~~ld~ 516 (644)
++... ...+..+.+..+.+. ..||+||-+..+.... ...+ ++.|+..+.. ...+-+||+|. +|..++.
T Consensus 103 ~~~~~~~~~L~~l~~~~k~~~-~dViIIDSls~~~~~~-------~~~~-vl~fm~~~r~l~d~gKvIilTv-hp~~l~e 172 (235)
T COG2874 103 WGRRSARKLLDLLLEFIKRWE-KDVIIIDSLSAFATYD-------SEDA-VLNFMTFLRKLSDLGKVIILTV-HPSALDE 172 (235)
T ss_pred cChHHHHHHHHHHHhhHHhhc-CCEEEEecccHHhhcc-------cHHH-HHHHHHHHHHHHhCCCEEEEEe-ChhhcCH
Confidence 22222 334455555555444 7899999998875321 1122 2233332221 11223444444 5677888
Q ss_pred HHhccc
Q 006458 517 AVADRI 522 (644)
Q Consensus 517 al~~Rf 522 (644)
+++-|+
T Consensus 173 ~~~~ri 178 (235)
T COG2874 173 DVLTRI 178 (235)
T ss_pred HHHHHH
Confidence 777654
No 436
>PLN02200 adenylate kinase family protein
Probab=96.99 E-value=0.00073 Score=68.72 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=29.0
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l 436 (644)
++..|+|.||||||||++|+.|++.+|.+. ++.+++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 345689999999999999999999998654 555444
No 437
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.98 E-value=0.0021 Score=68.73 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=44.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC--eEEEe-CCCCC------------CC-c-hhHHHHHHHHHHHHHhcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD--YALMT-GGDVA------------PL-G-PQAVTKIHQLFDWAKKSKRGLLL 463 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~--~~~i~-~~~l~------------~~-g-~~~~~~l~~~f~~a~~~~~~~VL 463 (644)
+++|++||+|+||||+.++|...+... ++.+. ..++. .. + +...-.+..++..+.+.+ |++|
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~-PD~I 239 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLR-PDRI 239 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccC-CCeE
Confidence 579999999999999999999987532 22221 01110 00 0 011123456777777766 8999
Q ss_pred EEeccch
Q 006458 464 FIDEADA 470 (644)
Q Consensus 464 ~IDEid~ 470 (644)
++.|+-.
T Consensus 240 ivGEiR~ 246 (332)
T PRK13900 240 IVGELRG 246 (332)
T ss_pred EEEecCC
Confidence 9999964
No 438
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.98 E-value=0.0027 Score=62.73 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.+.++|++|+|||++++.|+..+|.+++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 38999999999999999999988887764
No 439
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.98 E-value=0.018 Score=56.72 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+...++|.|++|+|||+|.+.+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999764
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.98 E-value=0.0093 Score=59.96 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCC
Q 006458 459 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 459 ~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~ 530 (644)
.|.|||.||=-. ..+......+..++..+....+.++|+.| .|+.+.+++|++|++..
T Consensus 160 ~P~iilADEPTg--------nLD~~t~~~V~~ll~~~~~~~g~tii~VT------Hd~~lA~~~dr~i~l~d 217 (226)
T COG1136 160 NPKIILADEPTG--------NLDSKTAKEVLELLRELNKERGKTIIMVT------HDPELAKYADRVIELKD 217 (226)
T ss_pred CCCeEEeeCccc--------cCChHHHHHHHHHHHHHHHhcCCEEEEEc------CCHHHHHhCCEEEEEeC
Confidence 367899888532 11334444555555555444455555555 67888899999988754
No 441
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.97 E-value=0.0046 Score=62.92 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=24.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHH---cCCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARK---SGLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~---l~~~~~~i~ 432 (644)
..+|++||||||||+++..++.. -|.+.++++
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 46899999999999999876544 255555554
No 442
>PRK13946 shikimate kinase; Provisional
Probab=96.97 E-value=0.00068 Score=66.24 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=29.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.+|+|.|+||||||++++.||+.+|.+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 56999999999999999999999999987655
No 443
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.97 E-value=0.0068 Score=73.58 Aligned_cols=113 Identities=14% Similarity=0.221 Sum_probs=68.2
Q ss_pred eEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--CCCHHHhcccceeEecCCCCHHHHHH
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG--DLDSAVADRIDEVLEFPLPGQEERFK 538 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~--~ld~al~~Rfd~~i~~~~p~~~er~~ 538 (644)
.||+|||+..|.... .......+..|.+. ....++.+|++|.+|+ .|...+.+-|...|-|..-+..+-..
T Consensus 1142 IVVIIDE~AdLm~~~-----~kevE~lI~rLAqk--GRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrt 1214 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-----GKKVEELIARLAQK--ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT 1214 (1355)
T ss_pred EEEEEcChHHHHhhh-----hHHHHHHHHHHHHH--hhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHH
Confidence 589999998875421 11222223333221 2556899999999986 57777888899999999999888888
Q ss_pred HHHHHHHHHhhhhCCCCCCcchhhhh----hhhhhhhccCCCHHHHHHHHHHc
Q 006458 539 LLKLYLDKYIAQAGSRKPGLVHRLFK----SEQQKIEIKGLTDDILMEAAAKT 587 (644)
Q Consensus 539 Il~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~l~~LA~~t 587 (644)
||...=.......+ .-++. ..+.++.-.-++|+.+..++...
T Consensus 1215 ILd~~GAE~LlG~G-------DmL~~~~g~~~p~RvqgafvsD~Ei~~vv~~~ 1260 (1355)
T PRK10263 1215 ILDQAGAESLLGMG-------DMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDW 1260 (1355)
T ss_pred hcCCcchhhccCCc-------cEEEecCCCCceeEEEeccCCHHHHHHHHHHH
Confidence 87654211111000 01111 12233333447888888887764
No 444
>PRK06547 hypothetical protein; Provisional
Probab=96.97 E-value=0.00076 Score=65.29 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=29.0
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.++..|+++|++|||||++++.|++.++.+++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34457889999999999999999999887766543
No 445
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.97 E-value=0.0052 Score=62.07 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---------CCCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---------~~~~~~i~~~~ 435 (644)
..+.|+||||||||+++..++... +..++++++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 358999999999999999997553 25667776544
No 446
>PF13245 AAA_19: Part of AAA domain
Probab=96.96 E-value=0.0012 Score=55.03 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=16.6
Q ss_pred EEEecCCCCChH-HHHHHHHHHc
Q 006458 403 MLFYGPPGTGKT-MAARELARKS 424 (644)
Q Consensus 403 iLL~GppGtGKT-~lAkaLA~~l 424 (644)
+++.|||||||| +++..++..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 666999999999 5555555555
No 447
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.95 E-value=0.0021 Score=68.60 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=56.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE-eCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM-TGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i-~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
..++|||||+||||+++..|-+.++..++.. |...-.- ..-.....|-+|||+-.-
T Consensus 263 nClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~ShFW---------------LqPL~d~Ki~llDDAT~~-------- 319 (432)
T PF00519_consen 263 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFW---------------LQPLADAKIALLDDATYP-------- 319 (432)
T ss_dssp SEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTSCGG---------------GGGGCT-SSEEEEEE-HH--------
T ss_pred cEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCCccc---------------ccchhcCcEEEEcCCccc--------
Confidence 4689999999999999999999998877654 2221110 111111347899999652
Q ss_pred CCHHHHHHHHHHHH-HhCC-------CCC------CEEEEEEeCCCCCCC---HHHhcccceeEecCCC
Q 006458 480 MSEAQRSALNALLF-RTGD-------QSK------DIVLALATNRPGDLD---SAVADRIDEVLEFPLP 531 (644)
Q Consensus 480 ~~~~~~~~l~~lL~-~~~~-------~~~------~viiI~ttN~~~~ld---~al~~Rfd~~i~~~~p 531 (644)
.-..+...+. .++. .++ -..+++|||..-.-+ .-|.+|+ .+++|+.|
T Consensus 320 ----cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi-~~f~F~n~ 383 (432)
T PF00519_consen 320 ----CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRI-TCFEFPNP 383 (432)
T ss_dssp ----HHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTE-EEEE--S-
T ss_pred ----HHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheE-EEEEcCCc
Confidence 2223333222 1221 111 134667888633222 4566898 88888765
No 448
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.95 E-value=0.00082 Score=64.57 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=28.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
+++|+|+||+|||++++.||..+|.+|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999987553
No 449
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0079 Score=64.86 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=29.8
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 436 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l 436 (644)
+...++|+||+|+|||+++..||..+ |..+..+++..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 44679999999999999999998765 556666665443
No 450
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.94 E-value=0.0048 Score=66.90 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..++|+||||+|||++++.|++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4599999999999999999999864
No 451
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=96.93 E-value=0.0043 Score=70.63 Aligned_cols=193 Identities=19% Similarity=0.256 Sum_probs=100.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcC-----CCeEEEEeccchhhhcc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSK-----RGLLLFIDEADAFLCER 475 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~-----~~~VL~IDEid~l~~~r 475 (644)
-|++=.||.|||||++=+- +....+.++|+.... -.+|-...... ..++|.|||+..+.-+
T Consensus 217 ~Nl~ELgPrgTGKS~~y~e----iSp~~~liSGG~~T~---------A~LFyn~~~~~~GlVg~~D~VaFDEva~i~f~- 282 (675)
T TIGR02653 217 YNLCELGPRGTGKSHVYKE----CSPNSILMSGGQTTV---------ANLFYNMSTRQIGLVGMWDVVAFDEVAGIEFK- 282 (675)
T ss_pred cceEEECCCCCCcceeeec----cCCceEEEECCccch---------hHeeEEcCCCceeEEeeccEEEEeeccccccC-
Confidence 3688899999999998753 333445566655422 11111111111 1468999999875221
Q ss_pred ccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCC---------------CCCC--CHHHhcccceeE-
Q 006458 476 NKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNR---------------PGDL--DSAVADRIDEVL- 526 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~---------------~~~l--d~al~~Rfd~~i- 526 (644)
. ...+..+-..+.. ....+++++-.|. |..+ |.+|++||+..|
T Consensus 283 -----d---~d~v~imK~YM~sG~FsRG~~~~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiP 354 (675)
T TIGR02653 283 -----D---KDGVQIMKDYMASGSFARGKESIEGKASIVFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIP 354 (675)
T ss_pred -----C---HHHHHHHHHHhhcCcccccccccccceeEEEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCc
Confidence 1 1233322222221 1223555555552 2333 668888885333
Q ss_pred --ecCCCCHHHHH---HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHH
Q 006458 527 --EFPLPGQEERF---KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMAS 601 (644)
Q Consensus 527 --~~~~p~~~er~---~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~ 601 (644)
++|...++... -++--||...... +.+ . +++ +.++.......+++.||...+-..
T Consensus 355 GWeiPk~~~e~~t~~yGl~~DylsE~l~~-----------lR~-----~---~~~-~~~~~~~~l~~~~~~RD~~aV~kt 414 (675)
T TIGR02653 355 GWEIPKMRPEYFTNRYGFIVDYLAEYMRE-----------MRK-----R---SFA-DAIDRFFKLGNNLNQRDVIAVRKT 414 (675)
T ss_pred CCcCccCCHHHcccCCcchHHHHHHHHHH-----------HHh-----h---hHH-HHHHhhEecCCCCchhhHHHHHHH
Confidence 45555443322 2333333332211 000 0 011 234555555678899998776644
Q ss_pred HHHHHhC-CCCCccCHHHHHHHHHHHHHhHHHHHH
Q 006458 602 VQAAVYG-SENCVLDPSLFREVVDYKVAEHQQRRK 635 (644)
Q Consensus 602 ~~aa~~~-~~~~~lt~~~~~~al~~~~~~~~~~~~ 635 (644)
+-....- -.++.+|.++++.+++..+-..++-..
T Consensus 415 ~SgllKLl~P~~~~~~ee~e~~l~~Ale~RrrVke 449 (675)
T TIGR02653 415 VSGLLKLLYPDGEYTKDDVRECLTYAMEGRRRVKE 449 (675)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4333221 244889999999999888766544333
No 452
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.93 E-value=0.00079 Score=68.23 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=27.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.|+|.||||+||||+++.||+.+|.+++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4999999999999999999999997776553
No 453
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.93 E-value=0.019 Score=54.57 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=74.7
Q ss_pred EecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHH
Q 006458 405 FYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQ 484 (644)
Q Consensus 405 L~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~ 484 (644)
=.+++||||||++.+|++.+|- +-.+...++... .....+..++..+.+.. ..|||+|=-..+.. .
T Consensus 4 PIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k--~~~~f~~~~l~~L~~~~-~~vViaDRNNh~~r----------e 69 (168)
T PF08303_consen 4 PIATIGCGKTTVALALSNLFGE-WGHVQNDNITGK--RKPKFIKAVLELLAKDT-HPVVIADRNNHQKR----------E 69 (168)
T ss_pred eecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC--CHHHHHHHHHHHHhhCC-CCEEEEeCCCchHH----------H
Confidence 3689999999999999999874 344544455332 23334445555553333 56888885554422 2
Q ss_pred HHHHHHHHHHh-C---CCCCCEEEEEEeCCCCCCCHHHh--------cccc--eeEecCCCCHHHHHHHHHHHHHHHh
Q 006458 485 RSALNALLFRT-G---DQSKDIVLALATNRPGDLDSAVA--------DRID--EVLEFPLPGQEERFKLLKLYLDKYI 548 (644)
Q Consensus 485 ~~~l~~lL~~~-~---~~~~~viiI~ttN~~~~ld~al~--------~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~ 548 (644)
+..+...+..+ . ....++-+|+-.=..+.-.+.+. .|=| ..|.....+......|+..+++.+.
T Consensus 70 R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 70 RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 33232222222 2 12346667664432222222222 2433 4566666678888899999998865
No 454
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.93 E-value=0.0084 Score=60.48 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.9
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..++|.||+|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999977
No 455
>PRK06696 uridine kinase; Validated
Probab=96.92 E-value=0.0018 Score=65.29 Aligned_cols=38 Identities=26% Similarity=0.180 Sum_probs=32.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA 437 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~ 437 (644)
+.-|.+.|+||+||||+|+.|+..+ |.+++.+++.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568999999999999999999998 6778887777664
No 456
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.92 E-value=0.0052 Score=63.60 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~ 433 (644)
..++|.||||+|||+++..++..+ |.++++++.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 458999999999999999886653 666666654
No 457
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.92 E-value=0.00089 Score=64.78 Aligned_cols=33 Identities=30% Similarity=0.600 Sum_probs=29.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
.+|+|.||+|+|||++++.|+..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999988876653
No 458
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.90 E-value=0.013 Score=57.57 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||+|.+.|+..+
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999876
No 459
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.90 E-value=0.0047 Score=64.91 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=25.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
..++|+|||||||||+|+.|++.+. .++.++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEec
Confidence 3588999999999999999999983 3344444
No 460
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.90 E-value=0.0063 Score=60.56 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..++|+||+|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999863
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.89 E-value=0.0009 Score=64.98 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=25.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.++|.||||+||||+++.|+..+|..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 48999999999999999999998866543
No 462
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.88 E-value=0.0014 Score=69.73 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=43.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEe-CCCCC-------CCchhHHHHHHHHHHHHHhcCCCeEEEEec
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG-----LDYALMT-GGDVA-------PLGPQAVTKIHQLFDWAKKSKRGLLLFIDE 467 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~-~~~l~-------~~g~~~~~~l~~~f~~a~~~~~~~VL~IDE 467 (644)
.++|++|++|+||||++++|...+. ..++.+. ..++. .+.....-.+..++..+.+.+ |++|++.|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~-PD~IivGE 223 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLR-PDRIIVGE 223 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCC-CCEEEEee
Confidence 4699999999999999999998762 2233332 11111 010111123556666677666 89999999
Q ss_pred cch
Q 006458 468 ADA 470 (644)
Q Consensus 468 id~ 470 (644)
+-.
T Consensus 224 iRg 226 (323)
T PRK13833 224 VRD 226 (323)
T ss_pred cCC
Confidence 953
No 463
>PRK02496 adk adenylate kinase; Provisional
Probab=96.88 E-value=0.00084 Score=65.40 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=26.6
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.++|+||||+|||++++.|+..+|.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776654
No 464
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.87 E-value=0.0045 Score=65.65 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=42.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeC-CCCC----C---C--c----hhHHHHHHHHHHHHHhcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTG-GDVA----P---L--G----PQAVTKIHQLFDWAKKSKRGLLLF 464 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~-~~l~----~---~--g----~~~~~~l~~~f~~a~~~~~~~VL~ 464 (644)
.+++|.||+|+|||+++++|+..+.. .++.+.. .++. . + . +...-.+..++..+.+.. |.+|+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~-pd~ii 223 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR-PDRII 223 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCC-CCeEE
Confidence 57999999999999999999988742 2222211 1110 0 0 0 001123455666666655 88999
Q ss_pred Eeccch
Q 006458 465 IDEADA 470 (644)
Q Consensus 465 IDEid~ 470 (644)
+||+-.
T Consensus 224 ~gE~r~ 229 (308)
T TIGR02788 224 LGELRG 229 (308)
T ss_pred EeccCC
Confidence 999963
No 465
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.86 E-value=0.0049 Score=66.64 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..++++||+|+||||++++|+..+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999999886
No 466
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.86 E-value=0.0075 Score=59.34 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=19.8
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+|+|.|.||+|||+++..|...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 5899999999999999999643
No 467
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=96.85 E-value=0.039 Score=57.83 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=85.3
Q ss_pred CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCC---HHHhc--ccceeEecCCCCH
Q 006458 459 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLD---SAVAD--RIDEVLEFPLPGQ 533 (644)
Q Consensus 459 ~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld---~al~~--Rfd~~i~~~~p~~ 533 (644)
+..|++|++++.+... ..++.|+..+...+.++++|+.++..+.-. ..+.. ++ .++.|..|+.
T Consensus 46 ~~kliii~~~~~~~~~-----------~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~-~~i~~~~~~~ 113 (302)
T TIGR01128 46 ERRLVELRNPEGKPGA-----------KGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNA-QIVECKTPKE 113 (302)
T ss_pred CCeEEEEECCCCCCCH-----------HHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCe-eEEEecCCCH
Confidence 3569999999986321 125556655655666777777776433211 12222 55 8889999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCc
Q 006458 534 EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCV 613 (644)
Q Consensus 534 ~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~ 613 (644)
.+...++..++.+.... ++++.+..|+..+.| +.+.+.+.+..+. .|.. +..
T Consensus 114 ~~~~~~i~~~~~~~g~~------------------------i~~~a~~~l~~~~~~-d~~~l~~el~KL~--~~~~-~~~ 165 (302)
T TIGR01128 114 QELPRWIQARLKKLGLR------------------------IDPDAVQLLAELVEG-NLLAIAQELEKLA--LYAP-DGK 165 (302)
T ss_pred HHHHHHHHHHHHHcCCC------------------------CCHHHHHHHHHHhCc-HHHHHHHHHHHHH--hhCC-CCC
Confidence 99999999999875432 899999999999854 5555555554332 2322 346
Q ss_pred cCHHHHHHHHHHH
Q 006458 614 LDPSLFREVVDYK 626 (644)
Q Consensus 614 lt~~~~~~al~~~ 626 (644)
||.+++...+...
T Consensus 166 It~e~I~~~~~~~ 178 (302)
T TIGR01128 166 ITLEDVEEAVSDS 178 (302)
T ss_pred CCHHHHHHHHhhh
Confidence 9999998887643
No 468
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.85 E-value=0.0013 Score=66.18 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 006458 403 MLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l 424 (644)
++++|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999884
No 469
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.85 E-value=0.0021 Score=60.97 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=30.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA 437 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~ 437 (644)
..|+|+|.||+|||++|++|.+.+ |.+++.+++..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 358999999999999999999887 7889999876553
No 470
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.84 E-value=0.00096 Score=66.56 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=26.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
|+|+||||+|||++|+.||..+|.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998766654
No 471
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.84 E-value=0.005 Score=60.11 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
-++|+||||+|||+++..++..+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987764
No 472
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.84 E-value=0.0032 Score=74.45 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=40.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCC------CCchhHHHHHHHHH-HHHH---hcCCCeEEEEecc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA------PLGPQAVTKIHQLF-DWAK---KSKRGLLLFIDEA 468 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~------~~g~~~~~~l~~~f-~~a~---~~~~~~VL~IDEi 468 (644)
.++|.|+||||||++++.+...+ |..++.+...... ..|.. ...++.+. .+.. ...+..||+|||+
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~-a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIE-SRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCc-eeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 48999999999999999987654 5555554322210 01111 11122221 1111 1234689999999
Q ss_pred chh
Q 006458 469 DAF 471 (644)
Q Consensus 469 d~l 471 (644)
..+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 886
No 473
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.82 E-value=0.0039 Score=61.77 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=23.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHc-------CCCeEEEeCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKS-------GLDYALMTGG 434 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l-------~~~~~~i~~~ 434 (644)
|+|++|+||+|||++.+.++..+ ...++.+++.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 79999999999999999887665 2345566543
No 474
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0083 Score=64.64 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..||+||||||||++++.|++.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998773
No 475
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.81 E-value=0.0063 Score=64.72 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=44.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEe-CCCCCC-------CchhHHHHHHHHHHHHHhcCCCeEEEEec
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS-----GLDYALMT-GGDVAP-------LGPQAVTKIHQLFDWAKKSKRGLLLFIDE 467 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~-~~~l~~-------~g~~~~~~l~~~f~~a~~~~~~~VL~IDE 467 (644)
.+++++||+|+|||+++++|+..+ ...++.+. ..++.. +.....-.+..++..+.+.+ |+.|++.|
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~-PD~IivGE 227 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMR-PDRILVGE 227 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCC-CCEEEEec
Confidence 569999999999999999999874 12233221 112210 10111123566777777766 89999999
Q ss_pred cch
Q 006458 468 ADA 470 (644)
Q Consensus 468 id~ 470 (644)
+-.
T Consensus 228 iR~ 230 (319)
T PRK13894 228 VRG 230 (319)
T ss_pred cCC
Confidence 964
No 476
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.80 E-value=0.064 Score=58.51 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHH
Q 006458 512 GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 512 ~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
..|..++-+|.-..|.+...+++.-...+...|...
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 456778888766999999999999888888888654
No 477
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.79 E-value=0.0017 Score=64.37 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=18.6
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.+.||.|||||++|-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998765
No 478
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.79 E-value=0.037 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.2
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
-.+|+||.|+|||.+..+|+-.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999987665
No 479
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.013 Score=57.98 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||+|++.|+..+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 468999999999999999998875
No 480
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.78 E-value=0.0052 Score=68.57 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=46.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC--------Cchh-------HHHHHHHHHHHHHhcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--------LGPQ-------AVTKIHQLFDWAKKSKRGLL 462 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~--------~g~~-------~~~~l~~~f~~a~~~~~~~V 462 (644)
..+||+|+||+|||+|+..++..+ +.+++++++.+... ++.. ....+..+...+... .+.+
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~-~~~~ 173 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE-NPQA 173 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc-CCcE
Confidence 358999999999999999997765 45677777643210 1100 011234444444443 4789
Q ss_pred EEEeccchhhh
Q 006458 463 LFIDEADAFLC 473 (644)
Q Consensus 463 L~IDEid~l~~ 473 (644)
|+||.+..+..
T Consensus 174 vVIDSIq~l~~ 184 (454)
T TIGR00416 174 CVIDSIQTLYS 184 (454)
T ss_pred EEEecchhhcc
Confidence 99999998754
No 481
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.78 E-value=0.0017 Score=69.61 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=43.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC--eEEEeC-CCCCC-------C-----c-hhHHHHHHHHHHHHHhcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD--YALMTG-GDVAP-------L-----G-PQAVTKIHQLFDWAKKSKRGLLLF 464 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~--~~~i~~-~~l~~-------~-----g-~~~~~~l~~~f~~a~~~~~~~VL~ 464 (644)
.++|+.||+|+||||++++|...+... ++.+.. .++.. + + +...-....++..+.+.+ |+.|+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~-pD~Ii 241 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMR-PDRIL 241 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCC-CCeEE
Confidence 579999999999999999999887432 222211 11100 0 0 001113445666677766 88999
Q ss_pred Eeccch
Q 006458 465 IDEADA 470 (644)
Q Consensus 465 IDEid~ 470 (644)
+.|+-.
T Consensus 242 vGEiR~ 247 (344)
T PRK13851 242 LGEMRD 247 (344)
T ss_pred EEeeCc
Confidence 999963
No 482
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.025 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..+.|.||+|+|||+|.+.|+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999963
No 483
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.78 E-value=0.011 Score=59.57 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=26.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
..+++.|+||+|||+++..++... |.++++++..
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 468899999999999999887543 6677666643
No 484
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.77 E-value=0.0019 Score=52.58 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=24.2
Q ss_pred EEEecCCCCChHHHHHHHHHHc-CCCeEEEe
Q 006458 403 MLFYGPPGTGKTMAARELARKS-GLDYALMT 432 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l-~~~~~~i~ 432 (644)
+.+.|+||+|||++++.|+..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6889999999999999999986 34444443
No 485
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.77 E-value=0.013 Score=65.59 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=27.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----C-CCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----G-LDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~-~~~~~i~~~~ 435 (644)
..++|+||+|+||||++..||..+ | ..+..+++..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 569999999999999999999765 2 3565566544
No 486
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.77 E-value=0.00099 Score=60.10 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 006458 403 MLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l 424 (644)
|+|.|+|||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 487
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.76 E-value=0.0028 Score=62.56 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=24.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|.|+|++|+|||++++.|+. +|.+++..
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~ 32 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDA 32 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEe
Confidence 489999999999999999998 77655433
No 488
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.76 E-value=0.036 Score=53.11 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||+|++.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999875
No 489
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0072 Score=61.20 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.6
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 006458 403 MLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l 424 (644)
+.|.||+||||||+.+.|=+..
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999986655
No 490
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.75 E-value=0.01 Score=59.29 Aligned_cols=34 Identities=41% Similarity=0.581 Sum_probs=27.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
..++++||||||||+++..+|... |.++++++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 348899999999999999998765 5677777654
No 491
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.74 E-value=0.026 Score=67.03 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..++|+||+|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56999999999999999999765
No 492
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.015 Score=62.64 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC--CCeEEEeCCCCC---------------CCchhHHHHHHHHHHHHHhcCCCe
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVA---------------PLGPQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~--~~~~~i~~~~l~---------------~~g~~~~~~l~~~f~~a~~~~~~~ 461 (644)
|..-+|+-|.||.|||||.-.++..+. .+++++++.+-. .+.--..+.+..+...+...+ |.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~-p~ 170 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK-PD 170 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC-CC
Confidence 334588889999999999888877762 378888876531 111223456677777777644 89
Q ss_pred EEEEeccchhhhccccCc-CC-HHHHHHHHHHHHHhCCCCCCEEEEE
Q 006458 462 LLFIDEADAFLCERNKTY-MS-EAQRSALNALLFRTGDQSKDIVLAL 506 (644)
Q Consensus 462 VL~IDEid~l~~~r~~~~-~~-~~~~~~l~~lL~~~~~~~~~viiI~ 506 (644)
+++||-|..+....-++. .+ ...+..-..|...-....-.++||+
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999876653322 12 2345555555554433344445554
No 493
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.73 E-value=0.0054 Score=63.39 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
..+|++||||||||+++..++... |.++++++..
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 358889999999999999886643 5566666643
No 494
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.0054 Score=65.28 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 006458 403 MLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l 424 (644)
+.|.||+||||||+.+.||-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999765
No 495
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.017 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||+|.+.|+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998864
No 496
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.73 E-value=0.028 Score=57.23 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 006458 403 MLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~ 423 (644)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
No 497
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.73 E-value=0.014 Score=68.52 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+-+.|++|||||||+|.|...+
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 349999999999999999998876
No 498
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.0075 Score=62.59 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=45.4
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCC----------------C-CchhHHHHHHHHHHHHHhcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA----------------P-LGPQAVTKIHQLFDWAKKSK 458 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~----------------~-~g~~~~~~l~~~f~~a~~~~ 458 (644)
+...++|+||+|+|||+++..|+..+ +..+..+++.... + ........+...+..+....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 34579999999999999999998876 3445455443221 0 00112233444444444434
Q ss_pred CCeEEEEeccchh
Q 006458 459 RGLLLFIDEADAF 471 (644)
Q Consensus 459 ~~~VL~IDEid~l 471 (644)
...+||||.....
T Consensus 154 ~~D~ViIDt~Gr~ 166 (270)
T PRK06731 154 RVDYILIDTAGKN 166 (270)
T ss_pred CCCEEEEECCCCC
Confidence 5789999988764
No 499
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.71 E-value=0.021 Score=60.16 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHH
Q 006458 378 SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 378 ~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.....|..++...... +.....|+|.|.+|+|||+++..|...
T Consensus 19 ~tq~~l~~~l~~l~~~---~~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 19 ATQTKLLELLGKLKEE---DVSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred HHHHHHHHHHHhcccc---cccceEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444444333222 233456999999999999999998653
No 500
>PHA00012 I assembly protein
Probab=96.71 E-value=0.0074 Score=63.31 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhc
Q 006458 458 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD 520 (644)
Q Consensus 458 ~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~ 520 (644)
+.++|++|||+...++.|......+ ..+...+... ...++-||++|..+..+|..++.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p---~~vie~l~~h--Rh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKER---QPVIDWFLHA--RKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCc---HHHHHHHHHh--ccCCceEEEEcCCHHHHhHHHHH
Confidence 3578999999999999887654221 2122222222 45667788899999999998874
Done!