Query 006458
Match_columns 644
No_of_seqs 558 out of 3774
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 01:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_L 26S protease subunit RP 100.0 6.8E-38 2.3E-42 341.0 22.4 239 364-628 174-424 (437)
2 4b4t_J 26S protease regulatory 100.0 8.4E-36 2.9E-40 319.8 25.7 240 364-629 141-392 (405)
3 4b4t_I 26S protease regulatory 100.0 3.7E-35 1.3E-39 315.6 23.6 240 364-629 175-426 (437)
4 4b4t_M 26S protease regulatory 100.0 8.6E-35 2.9E-39 316.3 22.7 238 364-627 174-423 (434)
5 4b4t_H 26S protease regulatory 100.0 2.2E-34 7.4E-39 312.4 25.7 242 364-631 202-455 (467)
6 4b4t_K 26S protease regulatory 100.0 5.7E-34 2E-38 309.6 24.9 238 364-627 165-415 (428)
7 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.9E-29 2.4E-33 262.2 26.7 212 364-601 5-225 (322)
8 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1E-28 3.4E-33 251.6 22.5 246 367-637 2-260 (262)
9 3eie_A Vacuolar protein sortin 100.0 6.2E-29 2.1E-33 262.4 20.7 211 364-600 11-229 (322)
10 2qp9_X Vacuolar protein sortin 100.0 1.2E-28 4E-33 263.9 21.8 213 364-602 44-264 (355)
11 3cf2_A TER ATPase, transitiona 100.0 1E-30 3.6E-35 302.8 4.5 239 365-629 471-746 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.8E-27 6.3E-32 242.6 23.0 238 365-628 6-254 (257)
13 3cf2_A TER ATPase, transitiona 100.0 5.8E-29 2E-33 288.2 12.9 235 365-626 198-459 (806)
14 2ce7_A Cell division protein F 100.0 1.3E-27 4.3E-32 263.8 22.7 239 365-629 10-259 (476)
15 3h4m_A Proteasome-activating n 100.0 1.9E-27 6.6E-32 245.7 22.4 241 364-630 10-262 (285)
16 2zan_A Vacuolar protein sortin 100.0 1.2E-27 4.2E-32 263.4 20.7 210 365-600 128-346 (444)
17 3d8b_A Fidgetin-like protein 1 99.9 1.7E-26 5.7E-31 247.4 24.2 239 364-628 77-336 (357)
18 3cf0_A Transitional endoplasmi 99.9 1.8E-27 6.1E-32 248.9 13.8 238 364-627 8-282 (301)
19 3b9p_A CG5977-PA, isoform A; A 99.9 2.6E-26 8.8E-31 238.8 21.8 237 364-626 14-272 (297)
20 3vfd_A Spastin; ATPase, microt 99.9 3.9E-26 1.3E-30 247.2 23.1 236 365-626 109-365 (389)
21 2x8a_A Nuclear valosin-contain 99.9 1.1E-25 3.7E-30 232.4 19.3 239 366-628 5-266 (274)
22 1ixz_A ATP-dependent metallopr 99.9 2.4E-25 8.1E-30 226.5 20.1 234 364-623 9-253 (254)
23 2dhr_A FTSH; AAA+ protein, hex 99.9 1.2E-25 4.2E-30 249.2 19.2 238 366-629 26-274 (499)
24 3hu3_A Transitional endoplasmi 99.9 2.5E-25 8.5E-30 247.1 20.9 241 365-632 198-465 (489)
25 2r62_A Cell division protease 99.9 7.8E-28 2.7E-32 246.5 -1.4 241 365-631 5-258 (268)
26 1iy2_A ATP-dependent metallopr 99.9 3E-24 1E-28 221.6 22.4 233 365-623 34-277 (278)
27 1qvr_A CLPB protein; coiled co 99.9 8.7E-22 3E-26 233.4 28.1 351 171-600 403-813 (854)
28 1ypw_A Transitional endoplasmi 99.9 9E-25 3.1E-29 256.6 -5.6 215 365-605 471-697 (806)
29 3t15_A Ribulose bisphosphate c 99.9 2.4E-22 8.3E-27 209.3 13.0 196 370-597 6-222 (293)
30 3pfi_A Holliday junction ATP-d 99.9 1.3E-20 4.4E-25 199.3 25.7 217 365-626 23-254 (338)
31 3syl_A Protein CBBX; photosynt 99.9 7.2E-22 2.5E-26 206.0 14.9 220 372-622 32-282 (309)
32 3uk6_A RUVB-like 2; hexameric 99.9 6E-21 2.1E-25 204.0 20.6 221 366-626 39-330 (368)
33 3pxi_A Negative regulator of g 99.9 2.7E-20 9.4E-25 217.9 24.4 237 317-600 456-718 (758)
34 1ofh_A ATP-dependent HSL prote 99.9 6.6E-21 2.3E-25 198.1 16.6 241 370-625 14-298 (310)
35 2c9o_A RUVB-like 1; hexameric 99.9 1.8E-20 6.2E-25 206.9 21.0 231 366-627 32-438 (456)
36 3m6a_A ATP-dependent protease 99.8 1.1E-20 3.8E-25 212.8 18.4 263 317-626 47-341 (543)
37 1hqc_A RUVB; extended AAA-ATPa 99.8 7.5E-20 2.6E-24 191.9 22.6 216 365-625 6-237 (324)
38 3u61_B DNA polymerase accessor 99.8 9.3E-21 3.2E-25 199.4 14.3 213 364-625 19-236 (324)
39 1r6b_X CLPA protein; AAA+, N-t 99.8 1.3E-19 4.6E-24 212.1 22.0 238 316-600 422-709 (758)
40 2chg_A Replication factor C sm 99.8 8.1E-19 2.8E-23 171.9 23.3 204 365-624 11-224 (226)
41 1ypw_A Transitional endoplasmi 99.8 5.2E-20 1.8E-24 216.2 17.4 209 365-600 198-416 (806)
42 3pvs_A Replication-associated 99.8 6.9E-19 2.3E-23 193.4 20.7 215 365-626 20-244 (447)
43 4fcw_A Chaperone protein CLPB; 99.8 7.2E-19 2.5E-23 183.3 19.4 206 370-601 16-273 (311)
44 1njg_A DNA polymerase III subu 99.8 2.6E-18 9E-23 170.2 22.3 205 365-623 17-248 (250)
45 2v1u_A Cell division control p 99.8 4.2E-18 1.4E-22 182.0 23.6 227 368-628 16-278 (387)
46 3hws_A ATP-dependent CLP prote 99.8 7.3E-19 2.5E-23 188.2 17.4 236 372-622 16-345 (363)
47 1d2n_A N-ethylmaleimide-sensit 99.8 8.5E-19 2.9E-23 179.9 16.9 202 370-606 32-246 (272)
48 1in4_A RUVB, holliday junction 99.8 1.3E-17 4.6E-22 176.6 26.0 217 366-627 20-251 (334)
49 1sxj_D Activator 1 41 kDa subu 99.8 3.1E-18 1.1E-22 181.4 18.6 213 364-624 30-261 (353)
50 2chq_A Replication factor C sm 99.8 1.8E-18 6.2E-23 180.3 16.2 209 364-624 10-224 (319)
51 2r44_A Uncharacterized protein 99.8 1.8E-18 6.1E-23 182.5 15.1 235 370-627 26-298 (331)
52 1iqp_A RFCS; clamp loader, ext 99.8 4.5E-18 1.5E-22 177.9 16.2 204 364-623 18-231 (327)
53 1jr3_A DNA polymerase III subu 99.8 3.1E-17 1.1E-21 175.0 22.9 206 364-623 9-241 (373)
54 1um8_A ATP-dependent CLP prote 99.8 7.2E-18 2.4E-22 181.3 17.5 238 371-623 21-362 (376)
55 3bos_A Putative DNA replicatio 99.8 9.6E-18 3.3E-22 167.1 17.0 207 366-624 23-241 (242)
56 1g41_A Heat shock protein HSLU 99.8 2.7E-17 9.1E-22 179.2 20.9 243 370-627 14-434 (444)
57 1sxj_B Activator 1 37 kDa subu 99.8 4.8E-17 1.7E-21 169.7 21.5 205 364-624 14-229 (323)
58 1g8p_A Magnesium-chelatase 38 99.7 5.5E-17 1.9E-21 171.7 20.7 248 365-629 18-325 (350)
59 1sxj_A Activator 1 95 kDa subu 99.7 7.6E-18 2.6E-22 188.8 14.0 222 364-626 32-274 (516)
60 2qby_B CDC6 homolog 3, cell di 99.7 7.3E-17 2.5E-21 172.8 21.0 216 370-628 19-272 (384)
61 2z4s_A Chromosomal replication 99.7 3.5E-17 1.2E-21 179.7 18.9 218 365-627 99-333 (440)
62 1l8q_A Chromosomal replication 99.7 2.5E-17 8.5E-22 173.3 16.4 220 365-625 5-239 (324)
63 1jbk_A CLPB protein; beta barr 99.7 7.3E-18 2.5E-22 161.2 10.2 159 367-540 18-194 (195)
64 1fnn_A CDC6P, cell division co 99.7 4.4E-16 1.5E-20 166.8 25.1 222 368-626 14-274 (389)
65 2qby_A CDC6 homolog 1, cell di 99.7 3.7E-16 1.2E-20 166.7 23.5 227 367-628 16-274 (386)
66 1r6b_X CLPA protein; AAA+, N-t 99.7 2E-16 6.9E-21 185.2 20.0 226 366-626 181-433 (758)
67 3pxg_A Negative regulator of g 99.7 1.4E-16 4.6E-21 176.4 16.4 186 365-600 174-379 (468)
68 1sxj_E Activator 1 40 kDa subu 99.7 6.5E-16 2.2E-20 163.9 20.8 190 364-601 7-239 (354)
69 1sxj_C Activator 1 40 kDa subu 99.7 9.7E-17 3.3E-21 170.1 14.4 207 364-624 18-237 (340)
70 3te6_A Regulatory protein SIR3 99.7 2.7E-16 9.2E-21 164.7 16.7 139 398-547 43-214 (318)
71 2bjv_A PSP operon transcriptio 99.7 4.2E-16 1.4E-20 159.1 17.4 214 369-619 4-250 (265)
72 1qvr_A CLPB protein; coiled co 99.7 9.8E-16 3.3E-20 181.5 20.4 202 366-602 165-388 (854)
73 2p65_A Hypothetical protein PF 99.7 1.9E-16 6.5E-21 151.1 10.0 152 367-532 18-187 (187)
74 1ojl_A Transcriptional regulat 99.6 3E-15 1E-19 156.4 18.3 210 371-619 2-245 (304)
75 3pxi_A Negative regulator of g 99.6 4.9E-15 1.7E-19 173.4 18.8 188 365-602 174-381 (758)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.6E-15 5.5E-20 168.3 13.4 229 371-620 22-280 (500)
77 1a5t_A Delta prime, HOLB; zinc 99.6 1.1E-14 3.6E-19 154.2 17.4 157 397-598 21-204 (334)
78 3f9v_A Minichromosome maintena 99.6 1.5E-15 5E-20 172.7 7.9 245 370-630 294-591 (595)
79 1w5s_A Origin recognition comp 99.5 2.7E-13 9.3E-18 146.2 20.5 227 369-626 20-293 (412)
80 3n70_A Transport activator; si 99.5 5E-14 1.7E-18 130.8 11.5 132 372-531 2-144 (145)
81 2gno_A DNA polymerase III, gam 99.5 1.9E-13 6.4E-18 142.8 11.7 143 375-544 1-152 (305)
82 3k1j_A LON protease, ATP-depen 99.5 3.9E-13 1.3E-17 153.3 15.0 223 365-625 35-374 (604)
83 3co5_A Putative two-component 99.4 5.9E-14 2E-18 130.0 5.6 132 372-531 5-142 (143)
84 1ny5_A Transcriptional regulat 99.3 1.9E-11 6.3E-16 131.9 16.3 214 370-622 136-383 (387)
85 4akg_A Glutathione S-transfera 99.2 2.6E-10 8.8E-15 146.6 24.1 139 401-548 1268-1435(2695)
86 3dzd_A Transcriptional regulat 99.2 4.2E-10 1.4E-14 120.5 20.4 194 371-600 129-355 (368)
87 3ec2_A DNA replication protein 99.2 1.9E-11 6.4E-16 117.1 7.6 133 366-512 5-144 (180)
88 3f8t_A Predicted ATPase involv 99.1 3.7E-10 1.3E-14 122.5 14.8 222 373-631 215-488 (506)
89 2kjq_A DNAA-related protein; s 99.1 4.8E-10 1.6E-14 104.5 9.9 106 399-529 35-146 (149)
90 1jr3_D DNA polymerase III, del 99.0 1.8E-09 6.3E-14 114.0 13.3 180 401-626 19-209 (343)
91 2qen_A Walker-type ATPase; unk 99.0 1.1E-08 3.7E-13 107.2 18.6 186 370-599 11-246 (350)
92 2w58_A DNAI, primosome compone 99.0 4.7E-10 1.6E-14 109.1 6.6 102 366-471 20-127 (202)
93 2fna_A Conserved hypothetical 99.0 9.4E-09 3.2E-13 107.8 16.5 157 369-546 11-224 (357)
94 1tue_A Replication protein E1; 98.9 3.6E-09 1.2E-13 103.0 9.7 109 401-532 59-180 (212)
95 4akg_A Glutathione S-transfera 98.9 1.3E-07 4.5E-12 121.9 25.8 147 371-541 623-790 (2695)
96 2r2a_A Uncharacterized protein 98.8 4.5E-09 1.5E-13 102.7 7.3 126 402-534 7-156 (199)
97 3vkg_A Dynein heavy chain, cyt 98.8 8.7E-08 3E-12 124.2 19.5 137 402-547 1306-1472(3245)
98 2qgz_A Helicase loader, putati 98.8 2E-09 6.9E-14 112.4 2.8 97 367-471 120-226 (308)
99 1u0j_A DNA replication protein 98.7 1.4E-07 4.6E-12 95.9 12.7 116 400-541 104-248 (267)
100 2vhj_A Ntpase P4, P4; non- hyd 98.6 6.2E-08 2.1E-12 100.8 9.2 111 401-517 124-241 (331)
101 3cmw_A Protein RECA, recombina 98.6 8.9E-08 3.1E-12 118.5 9.2 144 365-510 1014-1217(1706)
102 3kw6_A 26S protease regulatory 98.5 9.7E-08 3.3E-12 78.7 6.0 75 529-628 1-75 (78)
103 3vkg_A Dynein heavy chain, cyt 98.4 4.6E-06 1.6E-10 108.4 18.5 146 372-541 583-750 (3245)
104 2krk_A 26S protease regulatory 98.4 2.9E-07 9.9E-12 77.4 4.7 77 527-628 7-83 (86)
105 1ye8_A Protein THEP1, hypothet 98.3 2.1E-06 7.1E-11 82.2 10.3 26 402-427 2-27 (178)
106 3vlf_B 26S protease regulatory 98.2 7.5E-07 2.6E-11 75.1 3.0 81 532-637 2-82 (88)
107 1z6t_A APAF-1, apoptotic prote 98.0 8.7E-05 3E-09 83.7 17.3 145 369-544 122-299 (591)
108 3aji_B S6C, proteasome (prosom 98.0 6.8E-06 2.3E-10 68.3 5.0 76 531-631 1-76 (83)
109 3cmu_A Protein RECA, recombina 97.9 1.5E-05 5E-10 100.1 8.8 75 399-474 1426-1520(2050)
110 2orw_A Thymidine kinase; TMTK, 97.9 3.2E-06 1.1E-10 81.3 2.3 112 402-530 5-138 (184)
111 2iut_A DNA translocase FTSK; n 97.9 0.00027 9.2E-09 78.9 17.1 75 460-541 344-420 (574)
112 2cvh_A DNA repair and recombin 97.8 6.6E-05 2.3E-09 73.0 10.6 35 401-435 21-55 (220)
113 1g5t_A COB(I)alamin adenosyltr 97.8 0.00012 4.1E-09 70.8 11.9 118 401-530 29-179 (196)
114 1svm_A Large T antigen; AAA+ f 97.8 1.6E-05 5.4E-10 85.0 6.2 111 399-528 168-282 (377)
115 2b8t_A Thymidine kinase; deoxy 97.8 8.8E-05 3E-09 73.4 10.0 114 401-529 13-150 (223)
116 2r8r_A Sensor protein; KDPD, P 97.7 8.8E-05 3E-09 73.3 9.5 122 401-536 7-170 (228)
117 1n0w_A DNA repair protein RAD5 97.7 0.00018 6.2E-09 70.9 11.6 35 401-435 25-68 (243)
118 3upu_A ATP-dependent DNA helic 97.7 0.00011 3.8E-09 80.5 10.9 52 365-424 18-69 (459)
119 2ehv_A Hypothetical protein PH 97.7 0.00022 7.6E-09 70.6 11.4 33 401-433 31-67 (251)
120 2p5t_B PEZT; postsegregational 97.6 0.00016 5.5E-09 72.7 9.7 58 379-436 11-68 (253)
121 3dm5_A SRP54, signal recogniti 97.6 0.00054 1.8E-08 74.4 14.3 72 399-471 99-194 (443)
122 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00019 6.4E-09 70.1 9.7 32 401-432 24-58 (235)
123 2i3b_A HCR-ntpase, human cance 97.6 6.9E-05 2.3E-09 72.3 6.1 23 402-424 3-25 (189)
124 1xp8_A RECA protein, recombina 97.5 0.00032 1.1E-08 74.6 11.2 73 401-473 75-166 (366)
125 3sfz_A APAF-1, apoptotic pepti 97.5 0.00056 1.9E-08 83.3 14.8 148 368-544 121-299 (1249)
126 1vma_A Cell division protein F 97.5 0.00092 3.1E-08 69.3 13.8 36 399-434 103-141 (306)
127 4a74_A DNA repair and recombin 97.5 0.00065 2.2E-08 66.2 11.9 24 401-424 26-49 (231)
128 2ius_A DNA translocase FTSK; n 97.5 0.00081 2.8E-08 74.4 13.8 76 460-542 298-375 (512)
129 2zr9_A Protein RECA, recombina 97.5 0.00039 1.3E-08 73.5 10.4 73 401-473 62-153 (349)
130 1qhx_A CPT, protein (chloramph 97.5 9.5E-05 3.2E-09 69.5 5.1 33 401-433 4-36 (178)
131 3hr8_A Protein RECA; alpha and 97.5 0.00046 1.6E-08 73.0 10.9 73 401-473 62-153 (356)
132 1gvn_B Zeta; postsegregational 97.4 0.00017 5.9E-09 74.1 7.3 59 377-435 10-68 (287)
133 2dzn_B 26S protease regulatory 97.4 1.7E-05 6E-10 65.7 -0.2 70 534-628 1-70 (82)
134 3trf_A Shikimate kinase, SK; a 97.4 7E-05 2.4E-09 71.0 3.9 32 400-431 5-36 (185)
135 3kb2_A SPBC2 prophage-derived 97.4 0.00017 5.8E-09 67.1 5.8 30 402-431 3-32 (173)
136 1u94_A RECA protein, recombina 97.4 0.00041 1.4E-08 73.5 9.1 73 401-473 64-155 (356)
137 2yhs_A FTSY, cell division pro 97.4 0.0034 1.2E-07 68.9 16.6 26 399-424 292-317 (503)
138 3kl4_A SRP54, signal recogniti 97.4 0.001 3.5E-08 72.1 12.3 36 399-434 96-134 (433)
139 2a5y_B CED-4; apoptosis; HET: 97.3 0.0023 8E-08 71.6 15.5 143 374-543 131-305 (549)
140 3cmu_A Protein RECA, recombina 97.3 0.00051 1.7E-08 86.5 10.4 76 399-474 1080-1174(2050)
141 3vaa_A Shikimate kinase, SK; s 97.3 0.00013 4.3E-09 70.5 4.0 32 400-431 25-56 (199)
142 1pzn_A RAD51, DNA repair and r 97.3 0.0013 4.3E-08 69.6 11.8 35 401-435 132-175 (349)
143 1v5w_A DMC1, meiotic recombina 97.3 0.0012 4.2E-08 69.4 11.6 35 401-435 123-166 (343)
144 2z43_A DNA repair and recombin 97.3 0.00093 3.2E-08 69.7 10.5 74 401-474 108-218 (324)
145 3io5_A Recombination and repai 97.2 0.00035 1.2E-08 72.4 6.8 78 396-473 24-125 (333)
146 3iij_A Coilin-interacting nucl 97.2 0.00016 5.6E-09 68.2 3.8 31 401-431 12-42 (180)
147 2iyv_A Shikimate kinase, SK; t 97.2 0.00018 6.2E-09 68.1 3.9 31 402-432 4-34 (184)
148 1zuh_A Shikimate kinase; alpha 97.2 0.00018 6.1E-09 67.2 3.7 32 400-431 7-38 (168)
149 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.0016 5.5E-08 65.6 10.7 34 401-434 5-41 (260)
150 2cdn_A Adenylate kinase; phosp 97.2 0.00024 8.3E-09 68.4 4.4 31 401-431 21-51 (201)
151 1via_A Shikimate kinase; struc 97.2 0.00023 7.8E-09 67.0 3.9 29 402-430 6-34 (175)
152 2zts_A Putative uncharacterize 97.1 0.0029 1E-07 62.3 11.7 33 401-433 31-67 (251)
153 1y63_A LMAJ004144AAA protein; 97.1 0.00025 8.4E-09 67.6 3.5 31 401-431 11-42 (184)
154 1kag_A SKI, shikimate kinase I 97.1 0.00032 1.1E-08 65.6 4.2 29 401-429 5-33 (173)
155 2rhm_A Putative kinase; P-loop 97.1 0.00034 1.2E-08 66.4 4.4 30 401-430 6-35 (193)
156 3lw7_A Adenylate kinase relate 97.1 0.00026 8.8E-09 65.7 3.3 29 402-431 3-31 (179)
157 3e1s_A Exodeoxyribonuclease V, 97.0 0.0012 4.1E-08 74.4 9.2 31 401-431 205-238 (574)
158 1e6c_A Shikimate kinase; phosp 97.0 0.00031 1.1E-08 65.5 3.6 30 401-430 3-32 (173)
159 2c95_A Adenylate kinase 1; tra 97.0 0.00032 1.1E-08 66.8 3.6 31 401-431 10-40 (196)
160 1tev_A UMP-CMP kinase; ploop, 97.0 0.00031 1E-08 66.7 3.4 30 401-430 4-33 (196)
161 1zp6_A Hypothetical protein AT 97.0 0.00026 8.9E-09 67.3 2.9 35 401-435 10-44 (191)
162 2dr3_A UPF0273 protein PH0284; 97.0 0.0052 1.8E-07 60.3 12.4 33 401-433 24-59 (247)
163 1aky_A Adenylate kinase; ATP:A 97.0 0.00036 1.2E-08 68.3 3.7 32 400-431 4-35 (220)
164 2px0_A Flagellar biosynthesis 97.0 0.0057 1.9E-07 63.0 12.9 37 399-435 104-144 (296)
165 1ukz_A Uridylate kinase; trans 97.0 0.00039 1.4E-08 66.8 3.9 32 400-431 15-46 (203)
166 3t61_A Gluconokinase; PSI-biol 97.0 0.00045 1.5E-08 66.5 4.2 31 400-430 18-48 (202)
167 3jvv_A Twitching mobility prot 97.0 0.00083 2.8E-08 71.2 6.6 67 401-469 124-206 (356)
168 3lda_A DNA repair protein RAD5 97.0 0.0034 1.1E-07 67.5 11.4 35 401-435 179-222 (400)
169 2ze6_A Isopentenyl transferase 96.9 0.00047 1.6E-08 69.4 4.2 32 402-433 3-34 (253)
170 2vli_A Antibiotic resistance p 96.9 0.00039 1.3E-08 65.5 3.4 29 401-429 6-34 (183)
171 3dl0_A Adenylate kinase; phosp 96.9 0.00043 1.5E-08 67.4 3.7 30 402-431 2-31 (216)
172 3cm0_A Adenylate kinase; ATP-b 96.9 0.00046 1.6E-08 65.2 3.8 29 402-430 6-34 (186)
173 1vt4_I APAF-1 related killer D 96.9 0.0086 2.9E-07 71.1 15.0 44 373-423 130-173 (1221)
174 2pt5_A Shikimate kinase, SK; a 96.9 0.00047 1.6E-08 64.0 3.6 30 402-431 2-31 (168)
175 1ly1_A Polynucleotide kinase; 96.9 0.00038 1.3E-08 65.2 3.0 29 401-429 3-32 (181)
176 2eyu_A Twitching motility prot 96.9 0.00072 2.5E-08 68.4 5.2 68 401-469 26-108 (261)
177 2bwj_A Adenylate kinase 5; pho 96.9 0.00043 1.5E-08 66.0 3.4 31 401-431 13-43 (199)
178 3cmw_A Protein RECA, recombina 96.9 0.002 6.7E-08 80.3 9.9 74 401-474 35-127 (1706)
179 3fb4_A Adenylate kinase; psych 96.9 0.00048 1.6E-08 67.0 3.7 30 402-431 2-31 (216)
180 2fz4_A DNA repair protein RAD2 96.9 0.003 1E-07 62.7 9.6 31 402-432 110-140 (237)
181 1ak2_A Adenylate kinase isoenz 96.9 0.0005 1.7E-08 68.0 3.9 31 401-431 17-47 (233)
182 1knq_A Gluconate kinase; ALFA/ 96.9 0.00064 2.2E-08 63.7 4.4 35 400-436 8-42 (175)
183 1kht_A Adenylate kinase; phosp 96.9 0.00039 1.3E-08 65.8 2.8 25 401-425 4-28 (192)
184 3umf_A Adenylate kinase; rossm 96.9 0.00056 1.9E-08 67.3 3.9 31 400-430 29-59 (217)
185 3be4_A Adenylate kinase; malar 96.9 0.0004 1.4E-08 67.9 2.9 31 401-431 6-36 (217)
186 2v3c_C SRP54, signal recogniti 96.9 0.0033 1.1E-07 68.3 10.4 37 399-435 98-137 (432)
187 1qf9_A UMP/CMP kinase, protein 96.9 0.00046 1.6E-08 65.3 3.2 31 401-431 7-37 (194)
188 2pez_A Bifunctional 3'-phospho 96.9 0.00072 2.5E-08 63.7 4.5 33 401-433 6-41 (179)
189 1nlf_A Regulatory protein REPA 96.8 0.0047 1.6E-07 62.6 10.8 24 401-424 31-54 (279)
190 1zd8_A GTP:AMP phosphotransfer 96.8 0.00049 1.7E-08 67.6 3.3 31 401-431 8-38 (227)
191 2i1q_A DNA repair and recombin 96.8 0.002 6.8E-08 66.9 8.2 23 401-423 99-121 (322)
192 3tlx_A Adenylate kinase 2; str 96.8 0.00054 1.9E-08 68.4 3.7 33 399-431 28-60 (243)
193 1w4r_A Thymidine kinase; type 96.8 0.0019 6.6E-08 62.2 7.3 68 401-471 21-103 (195)
194 2yvu_A Probable adenylyl-sulfa 96.8 0.014 4.9E-07 55.0 13.5 35 399-433 12-49 (186)
195 3sr0_A Adenylate kinase; phosp 96.8 0.00068 2.3E-08 66.2 4.1 29 402-430 2-30 (206)
196 2z0h_A DTMP kinase, thymidylat 96.8 0.0018 6.3E-08 61.5 6.8 31 403-433 3-36 (197)
197 1zak_A Adenylate kinase; ATP:A 96.8 0.00071 2.4E-08 66.2 3.9 30 401-430 6-35 (222)
198 3lxw_A GTPase IMAP family memb 96.8 0.033 1.1E-06 55.4 16.2 23 401-423 22-44 (247)
199 2r6a_A DNAB helicase, replicat 96.8 0.0043 1.5E-07 67.8 10.4 33 401-433 204-240 (454)
200 4eun_A Thermoresistant glucoki 96.7 0.001 3.4E-08 64.1 4.4 35 400-436 29-63 (200)
201 1e4v_A Adenylate kinase; trans 96.7 0.00073 2.5E-08 65.8 3.5 30 402-431 2-31 (214)
202 2pbr_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 62.6 4.7 31 402-432 2-35 (195)
203 1cr0_A DNA primase/helicase; R 96.7 0.0059 2E-07 62.4 10.3 32 401-432 36-71 (296)
204 1xx6_A Thymidine kinase; NESG, 96.7 0.0026 8.9E-08 61.2 7.0 69 401-471 9-93 (191)
205 2wwf_A Thymidilate kinase, put 96.6 0.001 3.5E-08 64.2 3.8 27 401-427 11-37 (212)
206 3uie_A Adenylyl-sulfate kinase 96.6 0.0015 5E-08 62.9 4.8 37 399-435 24-63 (200)
207 1zu4_A FTSY; GTPase, signal re 96.6 0.016 5.4E-07 60.3 12.9 36 398-433 103-141 (320)
208 1nn5_A Similar to deoxythymidy 96.6 0.0012 4.1E-08 63.7 3.9 25 401-425 10-34 (215)
209 1cke_A CK, MSSA, protein (cyti 96.6 0.0014 4.8E-08 64.0 4.3 29 402-430 7-35 (227)
210 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4.3E-08 62.9 3.8 29 402-430 2-30 (205)
211 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.5E-08 64.6 4.0 30 402-431 2-31 (223)
212 2v54_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 62.6 4.2 32 401-432 5-37 (204)
213 1nks_A Adenylate kinase; therm 96.5 0.00083 2.8E-08 63.5 2.4 31 402-432 3-36 (194)
214 2if2_A Dephospho-COA kinase; a 96.5 0.001 3.6E-08 63.9 3.1 30 402-432 3-32 (204)
215 3crm_A TRNA delta(2)-isopenten 96.5 0.0013 4.5E-08 68.5 4.0 33 401-433 6-38 (323)
216 1x6v_B Bifunctional 3'-phospho 96.5 0.02 6.8E-07 64.8 13.7 34 400-433 52-88 (630)
217 3bh0_A DNAB-like replicative h 96.5 0.0089 3.1E-07 62.0 9.9 33 401-433 69-104 (315)
218 2q6t_A DNAB replication FORK h 96.4 0.009 3.1E-07 65.0 10.2 33 401-433 201-237 (444)
219 2j37_W Signal recognition part 96.4 0.0081 2.8E-07 66.4 9.9 72 399-471 100-195 (504)
220 3tif_A Uncharacterized ABC tra 96.4 0.014 4.9E-07 57.8 10.9 24 401-424 32-55 (235)
221 2plr_A DTMP kinase, probable t 96.4 0.0023 8E-08 61.4 4.9 27 401-427 5-31 (213)
222 2xxa_A Signal recognition part 96.4 0.035 1.2E-06 60.1 14.7 73 398-471 98-195 (433)
223 3nh6_A ATP-binding cassette SU 96.4 0.015 5.2E-07 60.0 11.2 24 401-424 81-104 (306)
224 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0054 1.9E-07 64.1 7.8 69 401-470 172-251 (330)
225 2bbw_A Adenylate kinase 4, AK4 96.4 0.0022 7.4E-08 63.8 4.6 30 400-429 27-56 (246)
226 1jjv_A Dephospho-COA kinase; P 96.4 0.0017 5.7E-08 62.6 3.5 28 402-430 4-31 (206)
227 3r20_A Cytidylate kinase; stru 96.4 0.0021 7.2E-08 63.9 4.3 30 401-430 10-39 (233)
228 3ake_A Cytidylate kinase; CMP 96.4 0.0021 7.1E-08 61.7 4.1 30 402-431 4-33 (208)
229 1uj2_A Uridine-cytidine kinase 96.4 0.0017 5.8E-08 65.0 3.6 38 401-438 23-68 (252)
230 3foz_A TRNA delta(2)-isopenten 96.4 0.0068 2.3E-07 62.6 8.0 32 401-432 11-42 (316)
231 2ixe_A Antigen peptide transpo 96.4 0.029 1E-06 56.8 12.7 24 401-424 46-69 (271)
232 3zvl_A Bifunctional polynucleo 96.3 0.0094 3.2E-07 64.3 9.3 35 400-436 258-292 (416)
233 2pcj_A ABC transporter, lipopr 96.3 0.025 8.5E-07 55.6 11.6 23 402-424 32-54 (224)
234 3nwj_A ATSK2; P loop, shikimat 96.3 0.0022 7.6E-08 64.4 4.0 31 401-431 49-79 (250)
235 2axn_A 6-phosphofructo-2-kinas 96.3 0.017 5.9E-07 64.1 11.6 32 401-432 36-70 (520)
236 2ewv_A Twitching motility prot 96.3 0.0031 1.1E-07 67.1 5.3 69 399-469 135-219 (372)
237 2grj_A Dephospho-COA kinase; T 96.3 0.002 6.7E-08 62.1 3.4 31 401-431 13-43 (192)
238 2ged_A SR-beta, signal recogni 96.3 0.021 7.1E-07 53.7 10.6 26 399-424 47-72 (193)
239 1vpl_A ABC transporter, ATP-bi 96.3 0.032 1.1E-06 56.1 12.4 24 401-424 42-65 (256)
240 2j9r_A Thymidine kinase; TK1, 96.3 0.0076 2.6E-07 58.9 7.5 31 402-432 30-63 (214)
241 2qor_A Guanylate kinase; phosp 96.2 0.0026 8.8E-08 61.4 4.0 28 398-425 10-37 (204)
242 4a1f_A DNAB helicase, replicat 96.2 0.0076 2.6E-07 63.2 7.8 33 401-433 47-82 (338)
243 3tui_C Methionine import ATP-b 96.2 0.023 8E-07 60.0 11.5 23 402-424 56-78 (366)
244 3def_A T7I23.11 protein; chlor 96.2 0.012 4E-07 59.2 8.8 24 400-423 36-59 (262)
245 1w36_D RECD, exodeoxyribonucle 96.2 0.0059 2E-07 69.3 7.2 24 401-424 165-188 (608)
246 1uf9_A TT1252 protein; P-loop, 96.2 0.0024 8.2E-08 60.9 3.5 29 401-430 9-37 (203)
247 4e22_A Cytidylate kinase; P-lo 96.1 0.0034 1.2E-07 62.9 4.4 29 401-429 28-56 (252)
248 4i1u_A Dephospho-COA kinase; s 96.1 0.0099 3.4E-07 58.0 7.5 126 401-541 10-151 (210)
249 3a8t_A Adenylate isopentenyltr 96.1 0.0023 7.8E-08 67.0 3.1 33 401-433 41-73 (339)
250 2orv_A Thymidine kinase; TP4A 96.1 0.021 7.1E-07 56.4 9.7 67 402-471 21-102 (234)
251 1j8m_F SRP54, signal recogniti 96.1 0.013 4.6E-07 60.2 8.7 71 400-471 98-192 (297)
252 3gfo_A Cobalt import ATP-bindi 96.0 0.015 5.3E-07 59.1 8.7 23 402-424 36-58 (275)
253 1nrj_B SR-beta, signal recogni 96.0 0.015 5E-07 56.0 8.2 25 400-424 12-36 (218)
254 1p9r_A General secretion pathw 96.0 0.021 7.1E-07 61.6 10.1 92 368-469 144-246 (418)
255 1ls1_A Signal recognition part 96.0 0.06 2E-06 55.2 13.2 35 399-433 97-134 (295)
256 3tau_A Guanylate kinase, GMP k 96.0 0.0043 1.5E-07 60.1 4.3 25 401-425 9-33 (208)
257 2h92_A Cytidylate kinase; ross 96.0 0.0042 1.4E-07 60.3 4.2 31 401-431 4-34 (219)
258 3exa_A TRNA delta(2)-isopenten 96.0 0.0084 2.9E-07 62.0 6.6 29 402-430 5-33 (322)
259 1tf7_A KAIC; homohexamer, hexa 96.0 0.034 1.1E-06 61.8 12.1 108 401-514 40-188 (525)
260 1q3t_A Cytidylate kinase; nucl 96.0 0.0045 1.5E-07 61.1 4.4 31 400-430 16-46 (236)
261 1rz3_A Hypothetical protein rb 96.0 0.0099 3.4E-07 57.1 6.7 34 400-433 22-58 (201)
262 1t6n_A Probable ATP-dependent 96.0 0.038 1.3E-06 53.3 10.9 23 401-423 52-74 (220)
263 2bdt_A BH3686; alpha-beta prot 96.0 0.0046 1.6E-07 58.6 4.1 25 402-426 4-28 (189)
264 3thx_A DNA mismatch repair pro 95.9 0.025 8.5E-07 67.0 11.1 102 401-511 663-785 (934)
265 1vht_A Dephospho-COA kinase; s 95.9 0.0042 1.4E-07 60.4 3.8 30 401-431 5-34 (218)
266 3lxx_A GTPase IMAP family memb 95.9 0.017 5.7E-07 56.9 8.3 23 401-423 30-52 (239)
267 1m7g_A Adenylylsulfate kinase; 95.9 0.0043 1.5E-07 60.1 3.8 34 401-434 26-63 (211)
268 1h65_A Chloroplast outer envel 95.9 0.016 5.4E-07 58.4 8.1 25 399-423 38-62 (270)
269 1ex7_A Guanylate kinase; subst 95.9 0.0057 1.9E-07 58.6 4.5 25 402-426 3-27 (186)
270 3c8u_A Fructokinase; YP_612366 95.9 0.0051 1.8E-07 59.5 4.2 27 399-425 21-47 (208)
271 2qt1_A Nicotinamide riboside k 95.9 0.003 1E-07 60.8 2.5 29 401-429 22-51 (207)
272 2dyk_A GTP-binding protein; GT 95.9 0.034 1.1E-06 50.2 9.5 23 401-423 2-24 (161)
273 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0047 1.6E-07 65.0 4.0 30 401-430 25-54 (359)
274 1kgd_A CASK, peripheral plasma 95.8 0.005 1.7E-07 58.2 3.8 25 401-425 6-30 (180)
275 3eph_A TRNA isopentenyltransfe 95.8 0.012 4.2E-07 62.8 7.2 31 401-431 3-33 (409)
276 3bgw_A DNAB-like replicative h 95.8 0.024 8E-07 61.8 9.7 33 401-433 198-233 (444)
277 1q57_A DNA primase/helicase; d 95.8 0.026 9E-07 62.3 10.2 33 401-433 243-279 (503)
278 1tf7_A KAIC; homohexamer, hexa 95.8 0.024 8.1E-07 63.0 9.9 33 401-433 282-317 (525)
279 3llm_A ATP-dependent RNA helic 95.8 0.043 1.5E-06 53.9 10.7 21 401-421 77-97 (235)
280 3rlf_A Maltose/maltodextrin im 95.8 0.02 6.8E-07 60.9 8.7 23 402-424 31-53 (381)
281 4g1u_C Hemin import ATP-bindin 95.8 0.016 5.3E-07 58.7 7.5 23 402-424 39-61 (266)
282 2ffh_A Protein (FFH); SRP54, s 95.8 0.076 2.6E-06 57.3 13.3 36 399-434 97-135 (425)
283 2j41_A Guanylate kinase; GMP, 95.8 0.0046 1.6E-07 59.1 3.4 24 401-424 7-30 (207)
284 2f6r_A COA synthase, bifunctio 95.8 0.0045 1.5E-07 63.1 3.5 30 401-431 76-105 (281)
285 1bif_A 6-phosphofructo-2-kinas 95.8 0.023 7.8E-07 62.3 9.3 25 401-425 40-64 (469)
286 3e70_C DPA, signal recognition 95.8 0.025 8.5E-07 59.0 9.1 26 399-424 128-153 (328)
287 1ltq_A Polynucleotide kinase; 95.8 0.0047 1.6E-07 63.1 3.4 29 401-429 3-32 (301)
288 3b6e_A Interferon-induced heli 95.7 0.03 1E-06 53.5 9.0 23 401-423 49-71 (216)
289 3asz_A Uridine kinase; cytidin 95.7 0.0059 2E-07 58.8 3.9 26 400-425 6-31 (211)
290 1qde_A EIF4A, translation init 95.7 0.015 5.3E-07 56.3 7.0 16 401-416 52-67 (224)
291 3d3q_A TRNA delta(2)-isopenten 95.7 0.0052 1.8E-07 64.4 3.7 30 402-431 9-38 (340)
292 1z47_A CYSA, putative ABC-tran 95.7 0.026 8.8E-07 59.5 9.0 23 402-424 43-65 (355)
293 2yyz_A Sugar ABC transporter, 95.7 0.03 1E-06 59.2 9.4 23 402-424 31-53 (359)
294 2og2_A Putative signal recogni 95.7 0.04 1.4E-06 58.2 10.4 26 399-424 156-181 (359)
295 3p32_A Probable GTPase RV1496/ 95.7 0.036 1.2E-06 58.4 10.1 34 400-433 79-115 (355)
296 3thx_B DNA mismatch repair pro 95.7 0.026 8.9E-07 66.7 9.8 103 401-512 674-797 (918)
297 2it1_A 362AA long hypothetical 95.7 0.03 1E-06 59.3 9.3 23 402-424 31-53 (362)
298 3tr0_A Guanylate kinase, GMP k 95.7 0.0066 2.3E-07 58.0 3.9 25 401-425 8-32 (205)
299 3b9q_A Chloroplast SRP recepto 95.7 0.039 1.3E-06 56.8 10.0 26 399-424 99-124 (302)
300 1r8s_A ADP-ribosylation factor 95.6 0.042 1.4E-06 49.8 9.1 22 402-423 2-23 (164)
301 1kao_A RAP2A; GTP-binding prot 95.6 0.019 6.4E-07 52.0 6.7 23 401-423 4-26 (167)
302 2oap_1 GSPE-2, type II secreti 95.6 0.0087 3E-07 66.3 5.2 68 401-469 261-343 (511)
303 3qf4_A ABC transporter, ATP-bi 95.6 0.081 2.8E-06 59.6 13.1 24 401-424 370-393 (587)
304 3fdi_A Uncharacterized protein 95.6 0.0075 2.6E-07 58.3 4.0 29 402-430 8-36 (201)
305 3a00_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 57.5 3.7 24 402-425 3-26 (186)
306 1lvg_A Guanylate kinase, GMP k 95.5 0.0067 2.3E-07 58.4 3.5 25 401-425 5-29 (198)
307 2gxq_A Heat resistant RNA depe 95.5 0.025 8.6E-07 53.9 7.5 23 401-423 39-62 (207)
308 2gza_A Type IV secretion syste 95.5 0.013 4.5E-07 61.9 6.0 69 401-470 176-263 (361)
309 3fe2_A Probable ATP-dependent 95.5 0.017 5.9E-07 56.9 6.2 18 401-418 67-84 (242)
310 1c9k_A COBU, adenosylcobinamid 95.5 0.016 5.3E-07 55.2 5.6 32 403-435 2-33 (180)
311 4aby_A DNA repair protein RECN 95.4 0.048 1.6E-06 58.3 10.0 23 402-424 62-84 (415)
312 1sky_E F1-ATPase, F1-ATP synth 95.4 0.052 1.8E-06 59.2 10.2 23 402-424 153-175 (473)
313 3b5x_A Lipid A export ATP-bind 95.4 0.11 3.9E-06 58.3 13.4 24 401-424 370-393 (582)
314 1vec_A ATP-dependent RNA helic 95.4 0.022 7.7E-07 54.2 6.6 18 401-418 41-58 (206)
315 3k53_A Ferrous iron transport 95.4 0.066 2.3E-06 53.8 10.3 24 400-423 3-26 (271)
316 2pl3_A Probable ATP-dependent 95.3 0.067 2.3E-06 52.2 10.0 18 401-418 63-80 (236)
317 4b3f_X DNA-binding protein smu 95.3 0.027 9.2E-07 64.2 8.1 39 375-423 190-228 (646)
318 3ney_A 55 kDa erythrocyte memb 95.3 0.011 3.8E-07 57.0 4.0 25 401-425 20-44 (197)
319 4a82_A Cystic fibrosis transme 95.3 0.054 1.8E-06 60.9 10.2 24 401-424 368-391 (578)
320 1zd9_A ADP-ribosylation factor 95.2 0.044 1.5E-06 51.4 8.0 23 401-423 23-45 (188)
321 2qmh_A HPR kinase/phosphorylas 95.2 0.0079 2.7E-07 58.1 2.7 25 401-425 35-59 (205)
322 1svi_A GTP-binding protein YSX 95.2 0.18 6.2E-06 47.0 12.3 24 400-423 23-46 (195)
323 3bor_A Human initiation factor 95.2 0.057 1.9E-06 53.0 9.0 17 401-417 68-84 (237)
324 1u8z_A RAS-related protein RAL 95.2 0.099 3.4E-06 47.1 10.1 23 401-423 5-27 (168)
325 3t34_A Dynamin-related protein 95.2 0.08 2.7E-06 55.6 10.7 22 401-422 35-56 (360)
326 1wb9_A DNA mismatch repair pro 95.2 0.062 2.1E-06 62.7 10.6 23 401-423 608-630 (800)
327 3vkw_A Replicase large subunit 95.2 0.086 2.9E-06 57.1 10.9 24 399-422 160-183 (446)
328 3dz8_A RAS-related protein RAB 95.1 0.077 2.6E-06 49.8 9.4 23 402-424 25-47 (191)
329 3pqc_A Probable GTP-binding pr 95.1 0.07 2.4E-06 49.7 9.0 23 401-423 24-46 (195)
330 2ce2_X GTPase HRAS; signaling 95.1 0.13 4.6E-06 46.0 10.7 22 402-423 5-26 (166)
331 3iuy_A Probable ATP-dependent 95.1 0.033 1.1E-06 54.2 6.9 18 401-418 58-75 (228)
332 3bc1_A RAS-related protein RAB 95.1 0.033 1.1E-06 51.9 6.5 23 401-423 12-34 (195)
333 3gmt_A Adenylate kinase; ssgci 95.0 0.014 4.9E-07 57.6 4.1 30 402-431 10-39 (230)
334 3b60_A Lipid A export ATP-bind 95.0 0.11 3.7E-06 58.5 11.8 24 401-424 370-393 (582)
335 2xtp_A GTPase IMAP family memb 95.0 0.07 2.4E-06 53.1 9.1 25 399-423 21-45 (260)
336 3qf4_B Uncharacterized ABC tra 95.0 0.067 2.3E-06 60.4 10.0 26 399-424 380-405 (598)
337 1odf_A YGR205W, hypothetical 3 95.0 0.025 8.6E-07 57.9 5.9 27 399-425 30-56 (290)
338 1xti_A Probable ATP-dependent 94.9 0.099 3.4E-06 54.7 10.5 21 401-421 46-66 (391)
339 1ewq_A DNA mismatch repair pro 94.9 0.067 2.3E-06 62.0 9.9 23 401-423 577-599 (765)
340 3ozx_A RNAse L inhibitor; ATP 94.9 0.11 3.7E-06 57.9 11.2 23 402-424 296-318 (538)
341 4gp7_A Metallophosphoesterase; 94.9 0.012 4E-07 55.2 2.9 20 401-420 10-29 (171)
342 2a9k_A RAS-related protein RAL 94.9 0.15 5.1E-06 46.9 10.6 23 401-423 19-41 (187)
343 2atv_A RERG, RAS-like estrogen 94.9 0.094 3.2E-06 49.4 9.3 23 401-423 29-51 (196)
344 1z6g_A Guanylate kinase; struc 94.9 0.016 5.4E-07 56.6 3.8 24 401-424 24-47 (218)
345 2z0m_A 337AA long hypothetical 94.9 0.028 9.7E-07 57.4 6.0 31 401-431 32-62 (337)
346 2wsm_A Hydrogenase expression/ 94.9 0.031 1E-06 53.9 5.9 25 401-425 31-55 (221)
347 3iby_A Ferrous iron transport 94.9 0.13 4.3E-06 51.5 10.6 23 401-423 2-24 (256)
348 2bov_A RAla, RAS-related prote 94.8 0.15 5.3E-06 47.9 10.7 24 400-423 14-37 (206)
349 1gtv_A TMK, thymidylate kinase 94.8 0.0066 2.3E-07 58.4 1.0 23 403-425 3-25 (214)
350 2xau_A PRE-mRNA-splicing facto 94.8 0.047 1.6E-06 63.6 8.3 59 365-423 69-132 (773)
351 1a7j_A Phosphoribulokinase; tr 94.8 0.0095 3.2E-07 61.1 2.1 36 402-437 7-45 (290)
352 3ber_A Probable ATP-dependent 94.8 0.048 1.7E-06 54.1 7.2 18 401-418 81-98 (249)
353 3szr_A Interferon-induced GTP- 94.8 0.097 3.3E-06 59.2 10.6 24 401-424 46-69 (608)
354 4dsu_A GTPase KRAS, isoform 2B 94.8 0.14 4.7E-06 47.4 10.0 23 401-423 5-27 (189)
355 1c1y_A RAS-related protein RAP 94.8 0.15 5.3E-06 45.9 10.1 22 402-423 5-26 (167)
356 2fn4_A P23, RAS-related protei 94.7 0.13 4.6E-06 47.0 9.7 23 401-423 10-32 (181)
357 1htw_A HI0065; nucleotide-bind 94.7 0.019 6.5E-07 53.3 3.7 24 401-424 34-57 (158)
358 3ly5_A ATP-dependent RNA helic 94.7 0.059 2E-06 54.0 7.6 18 401-418 92-109 (262)
359 1znw_A Guanylate kinase, GMP k 94.7 0.019 6.6E-07 55.3 3.8 24 402-425 22-45 (207)
360 4eaq_A DTMP kinase, thymidylat 94.6 0.017 5.8E-07 57.0 3.4 30 401-430 27-58 (229)
361 3q72_A GTP-binding protein RAD 94.6 0.034 1.2E-06 50.5 5.3 20 402-421 4-23 (166)
362 3lnc_A Guanylate kinase, GMP k 94.6 0.015 5.1E-07 57.0 3.0 24 401-424 28-52 (231)
363 4f4c_A Multidrug resistance pr 94.6 0.069 2.4E-06 65.9 9.4 27 399-425 443-469 (1321)
364 1xjc_A MOBB protein homolog; s 94.6 0.033 1.1E-06 52.3 5.2 33 401-433 5-40 (169)
365 3hdt_A Putative kinase; struct 94.6 0.019 6.4E-07 56.5 3.6 29 402-430 16-44 (223)
366 1s96_A Guanylate kinase, GMP k 94.6 0.02 6.9E-07 56.1 3.8 25 401-425 17-41 (219)
367 3fmo_B ATP-dependent RNA helic 94.6 0.16 5.6E-06 51.8 10.9 50 368-417 92-148 (300)
368 1jwy_B Dynamin A GTPase domain 94.6 0.14 4.7E-06 52.3 10.3 25 399-423 23-47 (315)
369 2yl4_A ATP-binding cassette SU 94.6 0.15 5.2E-06 57.4 11.5 24 401-424 371-394 (595)
370 3tqc_A Pantothenate kinase; bi 94.6 0.054 1.8E-06 56.3 7.2 27 399-425 91-117 (321)
371 3aez_A Pantothenate kinase; tr 94.6 0.037 1.3E-06 57.3 5.9 27 399-425 89-115 (312)
372 1rj9_A FTSY, signal recognitio 94.5 0.022 7.6E-07 58.7 4.1 26 399-424 101-126 (304)
373 3iev_A GTP-binding protein ERA 94.5 0.11 3.7E-06 53.5 9.3 26 398-423 8-33 (308)
374 2jeo_A Uridine-cytidine kinase 94.5 0.022 7.6E-07 56.5 3.9 27 401-427 26-52 (245)
375 2www_A Methylmalonic aciduria 94.5 0.12 4.1E-06 54.2 9.7 25 400-424 74-98 (349)
376 2v6i_A RNA helicase; membrane, 94.4 0.067 2.3E-06 57.8 7.8 17 401-417 3-19 (431)
377 1z06_A RAS-related protein RAB 94.4 0.083 2.8E-06 49.4 7.6 23 401-423 21-43 (189)
378 1z0f_A RAB14, member RAS oncog 94.4 0.087 3E-06 48.2 7.6 24 401-424 16-39 (179)
379 2oxc_A Probable ATP-dependent 94.4 0.072 2.5E-06 51.9 7.4 17 401-417 62-78 (230)
380 3oiy_A Reverse gyrase helicase 94.4 0.072 2.5E-06 56.7 7.9 20 401-420 37-56 (414)
381 1s2m_A Putative ATP-dependent 94.4 0.12 4E-06 54.5 9.4 20 401-420 59-78 (400)
382 2p67_A LAO/AO transport system 94.3 0.12 4.2E-06 53.9 9.2 33 399-431 55-90 (341)
383 1m8p_A Sulfate adenylyltransfe 94.3 0.025 8.6E-07 63.5 4.2 35 400-434 396-434 (573)
384 3pey_A ATP-dependent RNA helic 94.3 0.25 8.4E-06 51.5 11.6 19 401-419 45-63 (395)
385 3t1o_A Gliding protein MGLA; G 94.3 0.29 9.9E-06 45.4 11.1 24 401-424 15-38 (198)
386 2v9p_A Replication protein E1; 94.3 0.025 8.6E-07 58.4 3.8 24 401-424 127-150 (305)
387 1fzq_A ADP-ribosylation factor 94.2 0.044 1.5E-06 51.2 5.2 23 401-423 17-39 (181)
388 1hv8_A Putative ATP-dependent 94.2 0.12 4E-06 53.4 8.9 23 401-423 45-67 (367)
389 1zj6_A ADP-ribosylation factor 94.2 0.054 1.8E-06 50.6 5.7 23 400-422 16-38 (187)
390 1q0u_A Bstdead; DEAD protein, 94.2 0.18 6.3E-06 48.5 9.7 18 401-418 42-59 (219)
391 3ice_A Transcription terminati 94.2 0.062 2.1E-06 57.1 6.6 24 401-424 175-198 (422)
392 4dhe_A Probable GTP-binding pr 94.2 0.16 5.3E-06 48.8 9.1 24 400-423 29-52 (223)
393 3dkp_A Probable ATP-dependent 94.2 0.083 2.8E-06 51.9 7.3 17 401-417 67-83 (245)
394 4edh_A DTMP kinase, thymidylat 94.1 0.078 2.7E-06 51.6 6.9 30 402-431 8-40 (213)
395 3i8s_A Ferrous iron transport 94.1 0.27 9.1E-06 49.6 11.1 23 401-423 4-26 (274)
396 2qm8_A GTPase/ATPase; G protei 94.1 0.08 2.7E-06 55.3 7.4 24 401-424 56-79 (337)
397 2qtf_A Protein HFLX, GTP-bindi 94.1 0.37 1.3E-05 50.8 12.5 24 400-423 179-202 (364)
398 3hjn_A DTMP kinase, thymidylat 94.1 0.16 5.6E-06 48.6 8.9 30 403-432 3-35 (197)
399 2x2e_A Dynamin-1; nitration, h 94.1 0.29 9.8E-06 51.2 11.6 22 401-422 32-53 (353)
400 3fmp_B ATP-dependent RNA helic 94.0 0.065 2.2E-06 58.3 6.8 18 400-417 131-148 (479)
401 2o8b_B DNA mismatch repair pro 94.0 0.17 5.9E-06 60.6 10.8 21 401-421 790-810 (1022)
402 1wrb_A DJVLGB; RNA helicase, D 94.0 0.038 1.3E-06 54.7 4.4 18 401-418 61-78 (253)
403 2f7s_A C25KG, RAS-related prot 94.0 0.15 5.1E-06 48.7 8.5 23 401-423 26-48 (217)
404 3tmk_A Thymidylate kinase; pho 94.0 0.084 2.9E-06 51.6 6.7 31 401-431 6-36 (216)
405 1sq5_A Pantothenate kinase; P- 93.9 0.027 9.3E-07 58.1 3.3 25 401-425 81-105 (308)
406 3g5u_A MCG1178, multidrug resi 93.9 0.23 7.8E-06 61.1 12.0 26 399-424 415-440 (1284)
407 4dcu_A GTP-binding protein ENG 93.9 0.12 4.3E-06 56.1 8.7 22 401-422 24-45 (456)
408 3tqf_A HPR(Ser) kinase; transf 93.9 0.031 1.1E-06 52.7 3.2 23 401-423 17-39 (181)
409 2h57_A ADP-ribosylation factor 93.8 0.13 4.5E-06 48.0 7.7 24 401-424 22-45 (190)
410 1p5z_B DCK, deoxycytidine kina 93.8 0.015 5.3E-07 58.2 1.1 27 399-425 23-49 (263)
411 2b6h_A ADP-ribosylation factor 93.8 0.067 2.3E-06 50.5 5.5 22 401-422 30-51 (192)
412 3v9p_A DTMP kinase, thymidylat 93.7 0.055 1.9E-06 53.4 4.8 31 402-432 27-64 (227)
413 3e2i_A Thymidine kinase; Zn-bi 93.7 0.089 3E-06 51.4 6.2 30 403-432 31-63 (219)
414 3eiq_A Eukaryotic initiation f 93.7 0.25 8.5E-06 52.0 10.4 18 401-418 78-95 (414)
415 1np6_A Molybdopterin-guanine d 93.7 0.039 1.3E-06 52.1 3.5 24 401-424 7-30 (174)
416 1f6b_A SAR1; gtpases, N-termin 93.7 0.025 8.4E-07 53.9 2.2 22 401-422 26-47 (198)
417 3h1t_A Type I site-specific re 93.6 0.14 4.9E-06 57.3 8.7 47 372-424 176-222 (590)
418 2ocp_A DGK, deoxyguanosine kin 93.6 0.04 1.4E-06 54.3 3.7 25 401-425 3-27 (241)
419 3kta_A Chromosome segregation 93.6 0.044 1.5E-06 51.3 3.7 24 402-425 28-51 (182)
420 2aka_B Dynamin-1; fusion prote 93.6 0.62 2.1E-05 46.8 12.7 25 399-423 25-49 (299)
421 1g8f_A Sulfate adenylyltransfe 93.5 0.046 1.6E-06 60.4 4.3 35 401-435 396-435 (511)
422 3ux8_A Excinuclease ABC, A sub 93.5 0.25 8.5E-06 56.5 10.6 20 401-420 349-368 (670)
423 3o8b_A HCV NS3 protease/helica 93.4 0.15 5E-06 58.2 8.3 43 460-511 319-361 (666)
424 4f4c_A Multidrug resistance pr 93.4 0.18 6.1E-06 62.3 9.7 26 399-424 1104-1129(1321)
425 2zj8_A DNA helicase, putative 93.4 0.18 6E-06 58.1 9.2 18 401-418 40-57 (720)
426 1wf3_A GTP-binding protein; GT 93.3 0.39 1.3E-05 49.1 10.8 23 401-423 8-30 (301)
427 3sop_A Neuronal-specific septi 93.3 0.039 1.3E-06 55.8 3.1 23 402-424 4-26 (270)
428 2f9l_A RAB11B, member RAS onco 93.2 0.045 1.5E-06 51.9 3.3 22 402-423 7-28 (199)
429 2e87_A Hypothetical protein PH 93.2 1.1 3.8E-05 46.8 14.4 25 399-423 166-190 (357)
430 3llu_A RAS-related GTP-binding 93.2 0.19 6.5E-06 47.3 7.7 23 401-423 21-43 (196)
431 3b85_A Phosphate starvation-in 93.2 0.036 1.2E-06 53.9 2.6 22 402-423 24-45 (208)
432 1yrb_A ATP(GTP)binding protein 93.2 0.086 2.9E-06 52.2 5.5 38 396-433 10-49 (262)
433 2hup_A RAS-related protein RAB 93.2 0.11 3.8E-06 49.3 5.9 23 401-423 30-52 (201)
434 2gk6_A Regulator of nonsense t 93.1 0.042 1.5E-06 62.4 3.4 23 402-424 197-219 (624)
435 2onk_A Molybdate/tungstate ABC 93.1 0.049 1.7E-06 54.2 3.4 24 401-424 25-48 (240)
436 1oix_A RAS-related protein RAB 93.1 0.045 1.5E-06 51.7 3.0 23 402-424 31-53 (191)
437 1z2a_A RAS-related protein RAB 93.1 0.051 1.7E-06 49.2 3.3 23 401-423 6-28 (168)
438 3j16_B RLI1P; ribosome recycli 93.0 0.39 1.3E-05 54.2 11.1 112 403-528 381-541 (608)
439 3a1s_A Iron(II) transport prot 93.0 0.45 1.5E-05 47.5 10.4 22 401-422 6-27 (258)
440 2cbz_A Multidrug resistance-as 92.9 0.049 1.7E-06 54.0 3.1 24 401-424 32-55 (237)
441 2f1r_A Molybdopterin-guanine d 92.9 0.03 1E-06 52.7 1.4 25 401-425 3-27 (171)
442 1ek0_A Protein (GTP-binding pr 92.8 0.061 2.1E-06 48.8 3.3 23 401-423 4-26 (170)
443 2j0s_A ATP-dependent RNA helic 92.7 0.65 2.2E-05 48.8 11.9 20 401-420 75-94 (410)
444 3cr8_A Sulfate adenylyltranfer 92.7 0.044 1.5E-06 61.2 2.7 35 401-435 370-408 (552)
445 1sgw_A Putative ABC transporte 92.7 0.047 1.6E-06 53.3 2.6 23 402-424 37-59 (214)
446 1z0j_A RAB-22, RAS-related pro 92.7 0.063 2.2E-06 48.7 3.3 24 401-424 7-30 (170)
447 2db3_A ATP-dependent RNA helic 92.6 0.6 2E-05 50.1 11.5 16 401-416 94-109 (434)
448 2wji_A Ferrous iron transport 92.6 0.06 2E-06 49.4 3.1 21 402-422 5-25 (165)
449 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.063 2.2E-06 49.2 3.3 23 401-423 8-30 (177)
450 3fkq_A NTRC-like two-domain pr 92.6 0.49 1.7E-05 49.9 10.6 38 398-435 141-182 (373)
451 2nzj_A GTP-binding protein REM 92.6 0.061 2.1E-06 49.2 3.1 23 401-423 5-27 (175)
452 1b0u_A Histidine permease; ABC 92.6 0.057 2E-06 54.3 3.1 25 401-425 33-57 (262)
453 2zej_A Dardarin, leucine-rich 92.5 0.052 1.8E-06 50.8 2.6 21 402-422 4-24 (184)
454 1ky3_A GTP-binding protein YPT 92.5 0.066 2.3E-06 49.2 3.3 24 400-423 8-31 (182)
455 1g16_A RAS-related protein SEC 92.5 0.063 2.2E-06 48.7 3.1 23 401-423 4-26 (170)
456 1g6h_A High-affinity branched- 92.5 0.05 1.7E-06 54.5 2.6 23 402-424 35-57 (257)
457 2d2e_A SUFC protein; ABC-ATPas 92.5 0.06 2E-06 53.8 3.1 22 402-423 31-52 (250)
458 1nij_A Hypothetical protein YJ 92.5 0.12 4.2E-06 53.3 5.6 24 401-424 5-28 (318)
459 3g5u_A MCG1178, multidrug resi 92.5 0.47 1.6E-05 58.4 11.6 24 401-424 1060-1083(1284)
460 1fuu_A Yeast initiation factor 92.5 0.39 1.3E-05 50.0 9.6 17 401-417 59-75 (394)
461 1z08_A RAS-related protein RAB 92.5 0.069 2.4E-06 48.5 3.2 23 401-423 7-29 (170)
462 1lw7_A Transcriptional regulat 92.4 0.058 2E-06 56.9 3.1 27 401-427 171-197 (365)
463 1ji0_A ABC transporter; ATP bi 92.4 0.053 1.8E-06 53.8 2.6 23 402-424 34-56 (240)
464 1mv5_A LMRA, multidrug resista 92.4 0.06 2E-06 53.5 2.9 24 401-424 29-52 (243)
465 3fvq_A Fe(3+) IONS import ATP- 92.4 0.058 2E-06 56.9 2.9 23 402-424 32-54 (359)
466 2va8_A SSO2462, SKI2-type heli 92.3 0.21 7.3E-06 57.3 7.9 19 401-419 47-65 (715)
467 1r2q_A RAS-related protein RAB 92.3 0.074 2.5E-06 48.1 3.3 23 401-423 7-29 (170)
468 4ag6_A VIRB4 ATPase, type IV s 92.3 0.11 3.8E-06 55.1 5.1 32 401-432 36-70 (392)
469 2zu0_C Probable ATP-dependent 92.3 0.075 2.6E-06 53.6 3.6 23 401-423 47-69 (267)
470 2p6r_A Afuhel308 helicase; pro 92.3 0.1 3.4E-06 60.0 5.1 18 401-418 41-58 (702)
471 2erx_A GTP-binding protein DI- 92.3 0.072 2.4E-06 48.4 3.1 22 402-423 5-26 (172)
472 3q85_A GTP-binding protein REM 92.2 0.072 2.5E-06 48.4 3.1 21 402-422 4-24 (169)
473 3lv8_A DTMP kinase, thymidylat 92.2 0.077 2.6E-06 52.6 3.5 24 401-424 28-51 (236)
474 2ff7_A Alpha-hemolysin translo 92.2 0.064 2.2E-06 53.5 2.9 23 402-424 37-59 (247)
475 2pze_A Cystic fibrosis transme 92.2 0.065 2.2E-06 52.7 2.9 24 401-424 35-58 (229)
476 2ghi_A Transport protein; mult 92.2 0.067 2.3E-06 53.7 3.1 24 401-424 47-70 (260)
477 2olj_A Amino acid ABC transpor 92.2 0.067 2.3E-06 53.9 3.1 24 401-424 51-74 (263)
478 2qi9_C Vitamin B12 import ATP- 92.1 0.067 2.3E-06 53.4 2.9 23 402-424 28-50 (249)
479 2gj8_A MNME, tRNA modification 92.1 0.071 2.4E-06 49.4 2.9 23 401-423 5-27 (172)
480 3con_A GTPase NRAS; structural 92.1 0.067 2.3E-06 49.9 2.7 23 401-423 22-44 (190)
481 2lkc_A Translation initiation 92.1 0.092 3.1E-06 48.2 3.6 24 400-423 8-31 (178)
482 3l9o_A ATP-dependent RNA helic 92.1 0.19 6.5E-06 60.8 7.3 21 401-421 200-220 (1108)
483 2wjg_A FEOB, ferrous iron tran 92.1 0.077 2.6E-06 49.3 3.1 23 401-423 8-30 (188)
484 4dkx_A RAS-related protein RAB 92.1 0.15 5.2E-06 49.6 5.3 22 402-423 15-36 (216)
485 1upt_A ARL1, ADP-ribosylation 92.0 0.09 3.1E-06 47.8 3.5 23 401-423 8-30 (171)
486 2ihy_A ABC transporter, ATP-bi 92.0 0.062 2.1E-06 54.6 2.6 23 402-424 49-71 (279)
487 2wjy_A Regulator of nonsense t 92.0 0.073 2.5E-06 62.1 3.4 23 402-424 373-395 (800)
488 2y8e_A RAB-protein 6, GH09086P 92.0 0.08 2.7E-06 48.5 3.1 23 401-423 15-37 (179)
489 2yz2_A Putative ABC transporte 91.9 0.076 2.6E-06 53.5 3.1 23 402-424 35-57 (266)
490 2oil_A CATX-8, RAS-related pro 91.9 0.087 3E-06 49.3 3.3 23 401-423 26-48 (193)
491 3tw8_B RAS-related protein RAB 91.9 0.077 2.6E-06 48.7 2.9 22 401-422 10-31 (181)
492 3ld9_A DTMP kinase, thymidylat 91.9 0.098 3.3E-06 51.4 3.7 30 401-430 22-55 (223)
493 1v43_A Sugar-binding transport 91.8 0.076 2.6E-06 56.3 3.1 23 402-424 39-61 (372)
494 2hxs_A RAB-26, RAS-related pro 91.8 0.085 2.9E-06 48.4 3.1 23 401-423 7-29 (178)
495 3i5x_A ATP-dependent RNA helic 91.8 0.54 1.8E-05 52.1 10.2 16 401-416 112-127 (563)
496 3fho_A ATP-dependent RNA helic 91.8 0.27 9.3E-06 54.1 7.7 23 401-423 159-182 (508)
497 3kkq_A RAS-related protein M-R 91.8 0.098 3.4E-06 48.4 3.5 25 399-423 17-41 (183)
498 3geh_A MNME, tRNA modification 91.8 0.61 2.1E-05 50.8 10.3 22 402-423 226-247 (462)
499 1g29_1 MALK, maltose transport 91.8 0.079 2.7E-06 56.2 3.1 23 402-424 31-53 (372)
500 2hf9_A Probable hydrogenase ni 91.8 0.093 3.2E-06 50.6 3.4 26 400-425 38-63 (226)
No 1
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=340.96 Aligned_cols=239 Identities=23% Similarity=0.356 Sum_probs=197.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|++|.|.+++++.|...+.. ..++. .+..|+++||||||||||||++|++||++++.+|+.++++++..
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 57888999999999999999875554 43332 34468899999999999999999999999999999999999865
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ 513 (644)
+.+++...++.+|..|.... ||||||||+|.++++|.... .+.....+++.||..++. ...+++||+|||+|+.
T Consensus 254 k~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred ccchHHHHHHHHHHHHHHhcC-CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 77788899999999998776 89999999999998875443 234567788999998863 4567999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
|||+|++ |||..|+|++|+.++|..||+.++.++.. .++.++..||..|+|||
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-------------------------~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-------------------------TGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-------------------------CSCCCHHHHHHTCCSCC
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-------------------------CcccCHHHHHHhCCCCC
Confidence 9999998 69999999999999999999999875421 12335899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
|+||..+|..+...+...+...||.++|..+++....
T Consensus 388 GADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 388 GADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 9999999954333333344578999999999986543
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-36 Score=319.81 Aligned_cols=240 Identities=23% Similarity=0.315 Sum_probs=200.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|++|.|.+++++.|+.++.. ..++. .+..|++++|||||||||||++|+++|++++.+|+.++++++..
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 46788999999999999999875554 43332 24467899999999999999999999999999999999999865
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC--CHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~--~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+++...++.+|..|.... ||||||||+|.+++.+..... +.....+++.||..++ ....+++||+|||+|+.
T Consensus 221 k~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred cccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 77788999999999999876 899999999999988754432 3356778999999886 45678999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
|||+|+| |||..|+|++|+.++|..||+.++.+... .++.++..||..|+|||
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-------------------------~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-------------------------TRGINLRKVAEKMNGCS 354 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-------------------------CSSCCHHHHHHHCCSCC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-------------------------CccCCHHHHHHHCCCCC
Confidence 9999998 99999999999999999999998865321 12335899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
|+||..||..+...+...+...||.+||..+++.....
T Consensus 355 GADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 355 GADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 99999999644333333455789999999999887653
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-35 Score=315.58 Aligned_cols=240 Identities=20% Similarity=0.291 Sum_probs=199.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|++|.|.+++++.|...+.. ..++ ..+..|+++||||||||||||++|++||.+++.+|+.++++++..
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 56788999999999999999876554 3332 233467899999999999999999999999999999999999865
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+++...++.+|..|.... ||||||||+|.+++.|.... .+.....+++.||..++ ....+++||+|||+++.
T Consensus 255 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred ccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 77788899999999998776 89999999999998875443 23456778889998876 45678999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
||++|++ |||..|+|++|+.++|..||+.++.+... -++.+++.||..|+|||
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-------------------------~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-------------------------SEDVNLETLVTTKDDLS 388 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-------------------------CSCCCHHHHHHHCCSCC
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-------------------------CCcCCHHHHHHhCCCCC
Confidence 9999998 99999999999999999999999865321 12235899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
|+||..||..+...+.......||.+||..+++.....
T Consensus 389 GADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 99999999644333333455789999999999876543
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-35 Score=316.30 Aligned_cols=238 Identities=22% Similarity=0.290 Sum_probs=196.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHH-HHhhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLS-GATANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~-~~~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|++|.|.+++++.|...+ ....++ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 467889999999999999997643 333332 234467899999999999999999999999999999999999866
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ 513 (644)
+.+++...++.+|..+.... ||||||||+|.+++.|.... .......+++.||..++. ...+++||+|||+|+.
T Consensus 254 ~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred cccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 67788899999999998876 89999999999998875443 234567788999999874 3467999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
|||+|++ |||..|+|++|+.++|..||+.++.++.. -++.++..||..|+|||
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-------------------------~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-------------------------DDDINWQELARSTDEFN 387 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-------------------------CSCCCHHHHHHHCSSCC
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------CCcCCHHHHHHhCCCCC
Confidence 9999998 99999999999999999999999876432 12235889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
|+||..+|..+...+...+...||.+||..+++...
T Consensus 388 GADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 999999995433332223447899999999987543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=312.43 Aligned_cols=242 Identities=23% Similarity=0.330 Sum_probs=199.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|++|.|.+++++.|+..+.. ..++ ..+-.|+++||||||||||||++|++||++++.+|+.++++++..
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 46778999999999999999875543 3332 223468899999999999999999999999999999999999865
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC--CHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~--~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+++...++.+|..|.... ||||||||+|.++..|..... ......+++.+|..++ ....+++||+|||+++.
T Consensus 282 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred ccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 77788899999999998776 899999999999988765432 3455678888888886 34568999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
||++|+| |||..|+|++|+.++|..||+.++.++.. -.+.+++.||..|+|||
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-------------------------~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-------------------------ERGIRWELISRLCPNST 415 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-------------------------CSSCCHHHHHHHCCSCC
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------CCCCCHHHHHHHCCCCC
Confidence 9999998 99999999999999999999999865321 12235889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~ 631 (644)
|+||..||..+...+.......+|.++|..+++..+.+..
T Consensus 416 GADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 416 GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcc
Confidence 9999999954332222234478999999999998876654
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=309.61 Aligned_cols=238 Identities=25% Similarity=0.355 Sum_probs=196.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..|..+|+||.|.+++++.|...+.. ..++ ..+..|++++|||||||||||++|+++|++++.+|+.++++++..
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 46778999999999999999775543 3332 234468899999999999999999999999999999999999765
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+++...++.+|..|.... ||||||||+|.++..|.... .+.....+++.||..++ ....+++||+|||+++.
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred cccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 77788999999999998776 89999999999998875432 23456778999998886 45678999999999999
Q ss_pred CCHHHhc--ccceeEecC-CCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 514 LDSAVAD--RIDEVLEFP-LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~-~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
|||+|+| |||..|+|| +|+..+|..||+.++.+... .++.+++.||..|+||
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-------------------------~~~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-------------------------APEADLDSLIIRNDSL 378 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-------------------------CTTCCHHHHHHHTTTC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-------------------------CcccCHHHHHHHCCCC
Confidence 9999998 999999996 89999999999999865321 1234589999999999
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 591 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 591 SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
||+||..+|..+...+...+...|+.++|..++...+
T Consensus 379 sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 379 SGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 9999999995433333334557899999999987654
No 7
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.9e-29 Score=262.18 Aligned_cols=212 Identities=26% Similarity=0.429 Sum_probs=175.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchh---ccCCCCccEEEecCCCCChHHHHHHHHHHc-CCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTK---AHNAPFRNMLFYGPPGTGKTMAARELARKS-GLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~---~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-~~~~~~i~~~~l~~ 438 (644)
..+..+|++|+|.+.+++.|...+.. ..... ....|++++|||||||||||++|+++|+.+ +.+|+.++++++..
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 34566799999999999999875543 22222 123577899999999999999999999999 89999999988765
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC---CCCCEEEEEEeCCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---QSKDIVLALATNRPGDL 514 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~---~~~~viiI~ttN~~~~l 514 (644)
+.+.....+..+|..+.... |+||||||+|.+++.+.... ......+++.|+..++. ...+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCC-TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhcccccccc-chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 45566778899999887655 89999999999988765543 34566778888887753 46789999999999999
Q ss_pred CHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 515 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 515 d~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
|+++++||+..+++++|+.++|..||+.++..... .+++..+..|+..|+||||+|
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~------------------------~l~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN------------------------SLTEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB------------------------CCCHHHHHHHHHTCTTCCHHH
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999998864321 268899999999999999999
Q ss_pred HHHHHHH
Q 006458 595 IAKLMAS 601 (644)
Q Consensus 595 I~~L~~~ 601 (644)
|..||..
T Consensus 219 l~~l~~~ 225 (322)
T 1xwi_A 219 ISIIVRD 225 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999943
No 8
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=251.57 Aligned_cols=246 Identities=23% Similarity=0.347 Sum_probs=180.9
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhc----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cch
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 441 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~ 441 (644)
..+|++|+|.+.+++.|..++........ +..+++++|||||||||||++|+++|+.++.+++.++++++.. +++
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 34699999999999999888766544332 2246678999999999999999999999999999999998865 556
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc---CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCCH
Q 006458 442 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY---MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~---~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld~ 516 (644)
.....+..+|..+.... ++||||||+|.+...+.... ........++.++..++. ...+++||+|||.++.+++
T Consensus 82 ~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 82 LGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp HHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred hhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 66777888998887654 89999999999977654321 122344567777777653 3568999999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC-HHHHHHHHHHcCCCcHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT-DDILMEAAAKTEGFSGR 593 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~l~~LA~~t~G~Sgr 593 (644)
++++ ||+..++|++|+.++|..|++.++...... .+ +..+..|+..+.||+++
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~------------------------~~~~~~~~~l~~~~~g~~~~ 216 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT------------------------QSSTFYSQRLAELTPGFSGA 216 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC------------------------BTHHHHHHHHHHTCTTCCHH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC------------------------cchhhHHHHHHHHCCCCCHH
Confidence 9999 999999999999999999999999764321 22 23568899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHHHHHHhh
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKLA 637 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~~~~~~~ 637 (644)
+|..+|..+...+...+...|+.++|..++.........|.+.+
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~~~ 260 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKIL 260 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChhhhhHhh
Confidence 99999976555555455678999999999999887776665544
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=6.2e-29 Score=262.42 Aligned_cols=211 Identities=27% Similarity=0.416 Sum_probs=170.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhh-ch---hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATA-NT---KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-~~---~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
..+..+|++|+|.+.+++.|..++.... .. .....|++++|||||||||||++|+++|+.++.+|+.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 4566789999999999999987554322 11 234467789999999999999999999999999999999988744
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC---CCCCCEEEEEEeCCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---DQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~---~~~~~viiI~ttN~~~~ld 515 (644)
+.+.....+..+|..+.... |+||||||+|.|.+.+.... ......+.+.++..++ ....+++||+|||.++.++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCc-chHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 56677788899999988765 89999999999987664322 1123445555555554 4667899999999999999
Q ss_pred HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 516 ~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+++++||+..++|++|+.++|..||+.++..... .+++..+..|+..|+||||+||
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~------------------------~~~~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC------------------------VLTKEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC------------------------CCCHHHHHHHHHTTTTCCHHHH
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999998864321 2688899999999999999999
Q ss_pred HHHHH
Q 006458 596 AKLMA 600 (644)
Q Consensus 596 ~~L~~ 600 (644)
..||.
T Consensus 225 ~~l~~ 229 (322)
T 3eie_A 225 AVVVK 229 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99994
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=1.2e-28 Score=263.87 Aligned_cols=213 Identities=27% Similarity=0.414 Sum_probs=164.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~~~---~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
..+..+|++|+|++.+++.|...+... ..+ .....|++++|||||||||||++|++||+.++.+|+.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 355668999999999999997755322 221 223457789999999999999999999999999999999887643
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC---CCCCCEEEEEEeCCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---DQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~---~~~~~viiI~ttN~~~~ld 515 (644)
+.+.....+..+|..+.... ++||||||+|.|.+.+.... ......+++.||..++ ....+++||+|||.++.++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp C---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred hcchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCc-chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 44556677888998887654 89999999999987664432 3344556666766664 3467899999999999999
Q ss_pred HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 516 ~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+++++||+..++|++|+.++|..||+.++..... .+++..+..|+..|+||+|+||
T Consensus 202 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~------------------------~~~~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 202 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS------------------------VLTKEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB------------------------CCCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999998864321 2678899999999999999999
Q ss_pred HHHHHHH
Q 006458 596 AKLMASV 602 (644)
Q Consensus 596 ~~L~~~~ 602 (644)
..||..+
T Consensus 258 ~~l~~~A 264 (355)
T 2qp9_X 258 AVVVKDA 264 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999543
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=1e-30 Score=302.83 Aligned_cols=239 Identities=24% Similarity=0.378 Sum_probs=156.8
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHh-hch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGAT-ANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~-~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.+..+|+++.|.+++++.|..++... .++ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 45667999999999999997755432 222 223467889999999999999999999999999999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDL 514 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~l 514 (644)
+.+++...++.+|..|+... ||||||||+|.+++.|... ..+.....+++.||..++ ....+++||+|||+|+.|
T Consensus 551 ~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred ccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 77788899999999998766 8999999999999887643 223456678999999987 345679999999999999
Q ss_pred CHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH
Q 006458 515 DSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 592 (644)
Q Consensus 515 d~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg 592 (644)
|++++| |||..|+|++|+.++|..||+.++.+... -.+.++..||..|+||||
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~-------------------------~~~~dl~~la~~t~g~SG 684 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------------------AKDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC---------------------------CCC---------------
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCC-------------------------CCCCCHHHHHHhCCCCCH
Confidence 999999 99999999999999999999988754321 234568999999999999
Q ss_pred HHHHHHHHHHH--HHHhC-----------------------CCCCccCHHHHHHHHHHHHHh
Q 006458 593 REIAKLMASVQ--AAVYG-----------------------SENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 593 rdI~~L~~~~~--aa~~~-----------------------~~~~~lt~~~~~~al~~~~~~ 629 (644)
+||..+|..+. +.... .....|+.+||.+++......
T Consensus 685 adi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS 746 (806)
T 3cf2_A 685 ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence 99999995332 22110 011368889999888877654
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.8e-27 Score=242.55 Aligned_cols=238 Identities=25% Similarity=0.352 Sum_probs=187.3
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhc----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
.+..+|++|+|.+.+++.+..++........ +..+++++||+||||||||+++++|+..++.+++.+++.++.. +
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 4566799999999999999887766544321 2245678999999999999999999999999999999988765 3
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld 515 (644)
.+.....+..+|..+.... |+||||||+|.+...+.... ........++.++..++. ...+++||+|||.++.++
T Consensus 86 ~~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 3445567788898887544 79999999999987654321 122345677888877763 356799999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++ ||+..++|++|+.++|..|++.++..... .++..+..++..+.||+++
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-------------------------~~~~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-------------------------APDIDAAIIARGTPGFSGA 219 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHTCTTCCHH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-------------------------CccccHHHHHHHcCCCCHH
Confidence 99998 99999999999999999999988754211 1223467789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
||..+|..+...+...+...||.++|..+++....
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 99999976655555555679999999999987653
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.95 E-value=5.8e-29 Score=288.22 Aligned_cols=235 Identities=27% Similarity=0.423 Sum_probs=188.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHH-hhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGA-TANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.+..+|++|.|.++.++.|+.++.. +.++. .+..|+++||||||||||||++|++||+++|.+++.++++++..
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4567899999999999999886654 43332 23368899999999999999999999999999999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCCH
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld~ 516 (644)
+.+++...++.+|..|.... ||||||||+|.|++++.+.. ++..+.+++.|+..++. ...+++||+|||+++.+|+
T Consensus 278 ~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred cchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 77788899999999998765 89999999999998876554 33456778888877752 4567999999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
+|++ |||..|+|+.|+..+|..||+.++.+... .++.++..||..|+||+|+|
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-------------------------~~dvdl~~lA~~T~GfsgaD 410 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------------------ADDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-------------------------CTTCCHHHHHHHCCSCCHHH
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-------------------------CcccCHHHHHHhcCCCCHHH
Confidence 9999 99999999999999999999988754321 23446899999999999999
Q ss_pred HHHHHHHH--HHHHhC------C---------CCCccCHHHHHHHHHHH
Q 006458 595 IAKLMASV--QAAVYG------S---------ENCVLDPSLFREVVDYK 626 (644)
Q Consensus 595 I~~L~~~~--~aa~~~------~---------~~~~lt~~~~~~al~~~ 626 (644)
|..||..+ .+.... . ....++.++|..++...
T Consensus 411 L~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 99999533 222111 0 11357778888777554
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=1.3e-27 Score=263.79 Aligned_cols=239 Identities=25% Similarity=0.330 Sum_probs=186.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
.+..+|++|+|.++++..+..++....++. .+..+++++||+||||||||+++++||..++.+|+.++++++.. +
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 345579999999999999998877654432 22356688999999999999999999999999999999998865 4
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld 515 (644)
.+.....++.+|..+.... |+||||||+|.+...+... ........+++.|+..++ ....+++||++||.++.+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 4455667888999988655 8999999999998766432 122344567888888775 2346799999999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++ ||+..|.|++|+.++|..|++.++..... .++.++..|+..|.||+|+
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-------------------------~~~v~l~~la~~t~G~sga 223 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-------------------------AEDVNLEIIAKRTPGFVGA 223 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHTCTTCCHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-------------------------cchhhHHHHHHhcCCCcHH
Confidence 99997 99999999999999999999988764211 1222477799999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
||.++|..+...+...+...|+.++|..+++..+..
T Consensus 224 dL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 224 DLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 999999655444333445789999999999887644
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.9e-27 Score=245.66 Aligned_cols=241 Identities=25% Similarity=0.390 Sum_probs=193.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---h-ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---K-AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~~~---~-~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..+...|++|+|.+.+++.|..++... ... . .+..++.++|||||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 345667999999999999997755432 221 1 12246678999999999999999999999999999999988754
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+.....+..+|..+.... |+||||||+|.+++++.... ........+..++..++ ....+++||+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred hccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 55566777888898887665 79999999999987665432 13355667777887765 34568999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+++++++ ||+.+++|++|+.++|..|++.++..... ..+..+..|+..+.||+
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-------------------------AEDVNLEEIAKMTEGCV 223 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHHCTTCC
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-------------------------CCcCCHHHHHHHcCCCC
Confidence 9999999 99999999999999999999988754321 12335788999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
+++|..||..+...+.......||.++|..++.......
T Consensus 224 ~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 224 GAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 999999997776666656668899999999999887654
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=1.2e-27 Score=263.35 Aligned_cols=210 Identities=26% Similarity=0.432 Sum_probs=167.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHH-hhchh---ccCCCCccEEEecCCCCChHHHHHHHHHHc-CCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGA-TANTK---AHNAPFRNMLFYGPPGTGKTMAARELARKS-GLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~---~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-~~~~~~i~~~~l~~- 438 (644)
.+..+|++|+|++.++..|...+.. ...+. ....|++++|||||||||||++|++||+.+ +.+|+.++++++..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 4556799999999999999875532 22211 123567899999999999999999999999 89999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC---CCCCEEEEEEeCCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---QSKDIVLALATNRPGDLD 515 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~---~~~~viiI~ttN~~~~ld 515 (644)
+.+.....+..+|..+.... |+||||||+|.+++.+.... ......+++.||..++. ...+++||+|||.++.++
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ----CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCC-CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCcc-ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 34445566788888887655 89999999999987765442 34456788888888764 467899999999999999
Q ss_pred HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 516 ~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+++++||+.+++|++|+.++|..||+.++..... .+++.++..|+..|+||||+||
T Consensus 286 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~------------------------~l~~~~l~~la~~t~G~sgadl 341 (444)
T 2zan_A 286 SAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN------------------------SLTEADFQELGRKTDGYSGADI 341 (444)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE------------------------ECCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999998864321 2678899999999999999999
Q ss_pred HHHHH
Q 006458 596 AKLMA 600 (644)
Q Consensus 596 ~~L~~ 600 (644)
..||.
T Consensus 342 ~~l~~ 346 (444)
T 2zan_A 342 SIIVR 346 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99994
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=247.36 Aligned_cols=239 Identities=21% Similarity=0.329 Sum_probs=185.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchh---ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTK---AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~---~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
..++.+|++|+|++.++..|..++.. ..... ....+++++||+||||||||++|++||+.++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 35677899999999999999876543 22111 12356689999999999999999999999999999999988765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC----CCCCEEEEEEeCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSKDIVLALATNRPGDL 514 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----~~~~viiI~ttN~~~~l 514 (644)
+.+.....+..+|..+.... ++||||||+|.|...+.... ......+++.++..++. ...+++||+|||.++.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGB
T ss_pred ccchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCc-chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhC
Confidence 44556677888888887654 89999999999987654332 22455667777776642 35689999999999999
Q ss_pred CHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 515 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 515 d~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
++++++||+..++|++|+.++|..|+..++..... .++++.+..|+..+.||++++
T Consensus 235 ~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~------------------------~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 235 DEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC------------------------CLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB------------------------CCCHHHHHHHHHHTTTCCHHH
T ss_pred CHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC------------------------CccHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999998865321 278899999999999999999
Q ss_pred HHHHHHH-HHHHHh-C----------CCCCccCHHHHHHHHHHHHH
Q 006458 595 IAKLMAS-VQAAVY-G----------SENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 595 I~~L~~~-~~aa~~-~----------~~~~~lt~~~~~~al~~~~~ 628 (644)
|..||.. +..+.. . .....|+.++|..++.....
T Consensus 291 l~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 291 MTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 9999953 222222 1 23468999999999987754
No 18
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.94 E-value=1.8e-27 Score=248.93 Aligned_cols=238 Identities=24% Similarity=0.382 Sum_probs=177.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~-~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~ 438 (644)
..+..+|++|+|.+.+++.|..++... ..+ ..+..++.++|||||||||||++|++||..++.+++.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 356668999999999999998766542 111 112356678999999999999999999999999999999877643
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCC
Q 006458 439 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 -~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ 513 (644)
+.+.....+..+|..+.... |+||||||+|.+...+.... .......+++.+|..++ ....+++||+|||.++.
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 22334456788898887655 89999999999987654321 01122345566666654 24568999999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+++++++ ||+..++|++|+.++|..|++.++.+... ..+..+..++..+.|||
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-------------------------~~~~~~~~la~~~~g~s 221 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------------------AKDVDLEFLAKMTNGFS 221 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CSSCCHHHHHHTCSSCC
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-------------------------CccchHHHHHHHcCCCC
Confidence 9999998 99999999999999999999988865321 12234678888999999
Q ss_pred HHHHHHHHHHHHHHHhCC-------------------------CCCccCHHHHHHHHHHHH
Q 006458 592 GREIAKLMASVQAAVYGS-------------------------ENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~-------------------------~~~~lt~~~~~~al~~~~ 627 (644)
|+||..+|..+...+... .-..|+.++|..++....
T Consensus 222 g~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 222 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 999999995433222110 014689999999988663
No 19
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=2.6e-26 Score=238.76 Aligned_cols=237 Identities=24% Similarity=0.376 Sum_probs=178.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhh-chh---ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATA-NTK---AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~-~~~---~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
..++.+|++|+|++.++..|...+.... ... ....++.++||+||||||||++|+++++.++.+++.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3456679999999999999977654321 111 12246689999999999999999999999999999999988765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----CCCCEEEEEEeCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----QSKDIVLALATNRPGD 513 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----~~~~viiI~ttN~~~~ 513 (644)
+.+.....+..+|..+.... |+||||||+|.++..+.... ........+.++..++. ...+++||++||.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred ccchHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccccCc-chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 44455667788888877654 89999999999987654321 11123344455544432 1256999999999999
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++++||+..+++++|+.++|..|++.++..... .++++.+..|+..+.||+++
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~------------------------~~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS------------------------PLDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC------------------------CSCHHHHHHHHHHTTTCCHH
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999988865321 26788999999999999999
Q ss_pred HHHHHHHHH-HHHHhC-----------CCCCccCHHHHHHHHHHH
Q 006458 594 EIAKLMASV-QAAVYG-----------SENCVLDPSLFREVVDYK 626 (644)
Q Consensus 594 dI~~L~~~~-~aa~~~-----------~~~~~lt~~~~~~al~~~ 626 (644)
+|..||... ..+... .....||.++|..++...
T Consensus 228 ~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 228 DLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 999999533 232221 123579999999998654
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=247.17 Aligned_cols=236 Identities=27% Similarity=0.398 Sum_probs=174.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
.++..|++|+|++.+++.|..++...... ...+.+++++|||||||||||++|++||..++.+|+.++++.+.. +
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 188 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc
Confidence 45567999999999999997765433221 112346689999999999999999999999999999999998765 4
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC----CCCCCEEEEEEeCCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRPGDLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~----~~~~~viiI~ttN~~~~ld 515 (644)
.+.....+..+|..+.... ++||||||||.|+..+.... ......+++.|+..++ ....+++||+|||.++.++
T Consensus 189 ~g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ---CHHHHHHHHHHHHHSS-SEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cchHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCcc-chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 4455667888998888765 78999999999987654332 1123444555555443 2356799999999999999
Q ss_pred HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHH
Q 006458 516 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 595 (644)
Q Consensus 516 ~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI 595 (644)
+++++||+.+++|+.|+.++|..||+.++..... .++++.+..|+..+.||++++|
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~------------------------~l~~~~~~~la~~~~g~~~~~l 322 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS------------------------PLTQKELAQLARMTDGYSGSDL 322 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC------------------------CSCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999988865321 2788899999999999999999
Q ss_pred HHHHHH-HHHHHhC-----------CCCCccCHHHHHHHHHHH
Q 006458 596 AKLMAS-VQAAVYG-----------SENCVLDPSLFREVVDYK 626 (644)
Q Consensus 596 ~~L~~~-~~aa~~~-----------~~~~~lt~~~~~~al~~~ 626 (644)
..||.. +..+... .....|+.++|..++...
T Consensus 323 ~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 323 TALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp HHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 999953 3333222 134579999999998754
No 21
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=232.38 Aligned_cols=239 Identities=23% Similarity=0.330 Sum_probs=169.5
Q ss_pred CCCCCCccccChHHHHHHHHHH-HHhhch---h-ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 366 NGNGFGDVILHPSLQKRIRQLS-GATANT---K-AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~-~~~~~~---~-~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
|..+|++|.|.+++++.|...+ ....+. . .+-.++++++|+||||||||+++++||..++.+++.+++.++.. +
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 4557999999999999997633 333222 1 22345678999999999999999999999999999999988865 4
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCHH
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSA 517 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~a 517 (644)
.+.....+..+|+.+.... |+|+|+||+|.++..+.... .......++.++..++ .....++++++||.|+.+|++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp THHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHH
T ss_pred hhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCc-chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHh
Confidence 4556677888999886554 89999999999876543221 1122346677777764 345678888999999999999
Q ss_pred Hhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--CCCcHH
Q 006458 518 VAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGR 593 (644)
Q Consensus 518 l~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t--~G~Sgr 593 (644)
+++ |||..|+|++|+.++|..||+.++..... .. ...+.++..|+..+ +||||+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~--------------------~~--~~~~~~~~~la~~~~~~g~sga 220 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK--------------------PP--LDADVNLEAIAGDLRCDCYTGA 220 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT--------------------TB--BCTTCCHHHHHTCSGGGSCCHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC--------------------CC--CccccCHHHHHHhhccCCcCHH
Confidence 998 99999999999999999999988743110 00 12334588888864 599999
Q ss_pred HHHHHHHHHHH-HHhC----------CCCCccCHHHHHHHHHHHHH
Q 006458 594 EIAKLMASVQA-AVYG----------SENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 594 dI~~L~~~~~a-a~~~----------~~~~~lt~~~~~~al~~~~~ 628 (644)
||..||..+.. +... .....|+.+||..++.....
T Consensus 221 dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 221 DLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 99999953322 2211 12347999999999876543
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=2.4e-25 Score=226.51 Aligned_cols=234 Identities=24% Similarity=0.330 Sum_probs=175.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
..+..+|++++|.+.++..+..+........ .+...+++++|+||||||||+++++|+..++.+++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 4566789999999999999988776543321 12234567999999999999999999999999999998876543
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDL 514 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~l 514 (644)
+.+.....+..+|+.+.... ++++||||+|.+...+... .........++.++..++ .....++++++||.|+.+
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HhhHHHHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 23344456777888776443 7999999999987655321 123445667788887775 334567888899999999
Q ss_pred CHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH
Q 006458 515 DSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 592 (644)
Q Consensus 515 d~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg 592 (644)
|+++++ ||+..++|++|+.++|..||+.++..... .++..+..|+..+.||+|
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~la~~~~G~~~ 222 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-------------------------AEDVDLALLAKRTPGFVG 222 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHTCTTCCH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-------------------------CcccCHHHHHHHcCCCCH
Confidence 999998 99999999999999999999877643210 123347789999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 593 REIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 593 rdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
+||..+|..+...+.......||.+++.+++
T Consensus 223 ~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 223 ADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 9999999655444433445689999999876
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=1.2e-25 Score=249.24 Aligned_cols=238 Identities=24% Similarity=0.319 Sum_probs=187.3
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhc----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-Cc
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LG 440 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g 440 (644)
+..+|++|+|.++++..+..+.....+... +..+++++||+||||||||+|+++||..++.+++.++++++.. +.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 566799999999999999988776554322 2245678999999999999999999999999999999998865 33
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCH
Q 006458 441 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~ 516 (644)
+.....+..+|..+... .|+|+||||+|.+...+... .........++.++..++ .....+++|++||.|+.+|+
T Consensus 106 g~~~~~v~~lfq~a~~~-~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp THHHHHHHHHTTTSSSS-SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhHHHHHHHHHHHHHhc-CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 44556677788776543 37999999999987765431 224456678899998876 34456889999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
++++ |||..|+|++|+.++|..||+.++.... ..++..+..|+..|.||+|+|
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-------------------------l~~dv~l~~lA~~t~G~~gad 239 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-------------------------LAEDVDLALLAKRTPGFVGAD 239 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-------------------------CCCSSTTHHHHTTSCSCCHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCC-------------------------CChHHHHHHHHHhcCCCCHHH
Confidence 9998 9999999999999999999987653210 012335788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
Q 006458 595 IAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 629 (644)
Q Consensus 595 I~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~ 629 (644)
|.++|..+...+...+...||.++|..+++.....
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 99999755444444445789999999999877543
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=2.5e-25 Score=247.11 Aligned_cols=241 Identities=26% Similarity=0.411 Sum_probs=188.8
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHh-hch----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGAT-ANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~-~~~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.+..+|++|+|.+..+..|..++... ... ..+..++.++|||||||||||++|++|++.++.+|+.++|+++..
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 34567999999999999997765432 111 112356688999999999999999999999999999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--CCCCCEEEEEEeCCCCCCCH
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~~~~~viiI~ttN~~~~ld~ 516 (644)
+.+.....+..+|..+.... |+||||||+|.|.+++.... .+....+++.|+..++ ....+++||+|||.++.+++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred hcchhHHHHHHHHHHHHhcC-CcEEEecchhhhcccccccc-chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 55677788899999998765 79999999999988765433 3455667777777665 35668999999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
++++ ||+..|+|++|+.++|..||+.++..... ..+..+..++..+.||+++|
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-------------------------~~~~~l~~la~~t~g~s~~d 410 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------------------ADDVDLEQVANETHGHVGAD 410 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-------------------------CTTCCHHHHHHTCTTCCHHH
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-------------------------cchhhHHHHHHHccCCcHHH
Confidence 9998 99999999999999999999988754321 12335788999999999999
Q ss_pred HHHHHHHHHHHHh-CC-C---------------CCccCHHHHHHHHHHHHHhHHH
Q 006458 595 IAKLMASVQAAVY-GS-E---------------NCVLDPSLFREVVDYKVAEHQQ 632 (644)
Q Consensus 595 I~~L~~~~~aa~~-~~-~---------------~~~lt~~~~~~al~~~~~~~~~ 632 (644)
|..||..+...+. .. . ...||.++|..++........+
T Consensus 411 L~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~r 465 (489)
T 3hu3_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (489)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhh
Confidence 9999954333322 21 1 1258999999999988766543
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=7.8e-28 Score=246.53 Aligned_cols=241 Identities=24% Similarity=0.338 Sum_probs=177.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
.+...|++|+|++.++..+..++....... ....+++++|||||||||||++|+++|+.++.+++.++++.+.. +
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 445679999999999999988776544332 12345678999999999999999999999999999999888754 2
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC---CHHHHHHHHHHHHHhCC---CCCCEEEEEEeCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM---SEAQRSALNALLFRTGD---QSKDIVLALATNRPGD 513 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~---~~~~~~~l~~lL~~~~~---~~~~viiI~ttN~~~~ 513 (644)
.+.....+..+|..+.... ++||||||+|.|...+..... .......++.++..++. ...+++||+|||.++.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred cchHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 2223334556777777654 789999999999765432110 00112245566665543 3346899999999999
Q ss_pred CCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCc
Q 006458 514 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 591 (644)
Q Consensus 514 ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~S 591 (644)
+++++++ ||+..++|++|+.++|..||+.++..+.. .++..+..|+..+.||+
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~la~~~~g~~ 218 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-------------------------ANDVNLQEVAKLTAGLA 218 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-------------------------CSSCCTTTTTSSSCSSC
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-------------------------CCccCHHHHHHHcCCCC
Confidence 9999998 99999999999999999999888754211 12223566888899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHH
Q 006458 592 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 592 grdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~ 631 (644)
|+||..+|..+...+...+...|+.+++..++......+.
T Consensus 219 g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 219 GADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcch
Confidence 9999999987666666555678999999998876554433
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=3e-24 Score=221.63 Aligned_cols=233 Identities=24% Similarity=0.327 Sum_probs=175.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchh----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-C
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~ 439 (644)
.+..+|++|+|.++++..+..+........ .+...+++++|+||||||||+++++|+..++.+++.+++.++.. .
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 356689999999999999988776554321 12234567999999999999999999999999999998876543 2
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC--cCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~--~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld 515 (644)
.+.....+..+|+.+.... ++++||||+|.+...+... .........++.++..++. ....++++++||.|+.+|
T Consensus 114 ~~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred hhHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 2334456777888876544 7999999999987654321 1233456778888887753 345678888999999999
Q ss_pred HHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+++++ ||+..|+|++|+.++|..||+.++..... .++..+..++..+.||+++
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-------------------------AEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHTCTTCCHH
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-------------------------CcccCHHHHHHHcCCCCHH
Confidence 99998 99999999999999999999977643110 1223477899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
||..+|..+...+.......||.+++.+++
T Consensus 248 dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 248 DLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999655443333344689999999876
No 27
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.89 E-value=8.7e-22 Score=233.38 Aligned_cols=351 Identities=21% Similarity=0.237 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006458 171 EDELARKRMQAENEYHRARNQELVKMQEESSIRLEQARRAT---EEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAH 247 (644)
Q Consensus 171 ~d~l~r~~~~~e~e~~~~~~~~~~~~~~e~~~r~e~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~ 247 (644)
=++++|+.++.+.+.....++.+. .+..|.+.++++. ..++..+..+|+.+...+...........+++..+.
T Consensus 403 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (854)
T 1qvr_A 403 IDALERKKLQLEIEREALKKEKDP----DSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 478 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSH----HHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 467788888888888777766421 2223333333332 235566777787777766666555555444443333
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHhhhhhhhhchhhhhhcchhhHHHHHhhhhhhhhhhccccCchhHHHHHHHHH
Q 006458 248 EAKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRI 327 (644)
Q Consensus 248 ~~~~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~~~~~v~~~~~~~~gv~t~~~~~~v~~~~i~~~ 327 (644)
....+.|... +.+.++..++.+.......... . ....+.........+...|.+|
T Consensus 479 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~v~~~~l~~~v~~~ 533 (854)
T 1qvr_A 479 LAERQYDLNR------AAELRYGELPKLEAEVEALSEK----L---------------RGARFVRLEVTEEDIAEIVSRW 533 (854)
T ss_dssp HHTTTTCHHH------HHHHHTTHHHHHHHHHHHHHHH----S---------------SSCSSCCSEECHHHHHHHHHTT
T ss_pred HHHhcccHHH------HHHHhhhhhHHHHHHHHHHHhh----h---------------cccccccCCcCHHHHHHHHHHH
Confidence 3333333322 1222222233332222111100 0 0001122233455677778888
Q ss_pred hCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHhh-chhccCCCCccEEEe
Q 006458 328 LGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATA-NTKAHNAPFRNMLFY 406 (644)
Q Consensus 328 ~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~-~~~~~~~p~~~iLL~ 406 (644)
+| +|+..+...+...+..+...+ +++|+|++.++..|...+.... ....++.|..++||+
T Consensus 534 ~~------------ip~~~~~~~~~~~l~~l~~~l-------~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~ 594 (854)
T 1qvr_A 534 TG------------IPVSKLLEGEREKLLRLEEEL-------HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFL 594 (854)
T ss_dssp SS------------CHHHHTTCCHHHHHHSHHHHH-------HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEB
T ss_pred hC------------CChHhhcHHHHHHHHHHHHHH-------hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEE
Confidence 88 555444444444444444444 6789999999999877555443 334455677799999
Q ss_pred cCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC--------------chhHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 006458 407 GPPGTGKTMAARELARKS---GLDYALMTGGDVAPL--------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEAD 469 (644)
Q Consensus 407 GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~--------------g~~~~~~l~~~f~~a~~~~~~~VL~IDEid 469 (644)
||||||||++|++|+..+ +.+++.++|+.+... |.... ..|..+....+++||||||+|
T Consensus 595 Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~----g~l~~~~~~~~~~vl~lDEi~ 670 (854)
T 1qvr_A 595 GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG----GQLTEAVRRRPYSVILFDEIE 670 (854)
T ss_dssp SCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC------------------CHHHHHHHCSSEEEEESSGG
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCcccc----chHHHHHHhCCCeEEEEeccc
Confidence 999999999999999998 789999999887542 11111 223334445668999999999
Q ss_pred hhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCC--------------------------CC
Q 006458 470 AFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNR--------------------------PG 512 (644)
Q Consensus 470 ~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~--------------------------~~ 512 (644)
.+ + ..+++.|++.+++ +..+++||+|||. ..
T Consensus 671 ~l---------~---~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~ 738 (854)
T 1qvr_A 671 KA---------H---PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQ 738 (854)
T ss_dssp GS---------C---HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cc---------C---HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHh
Confidence 86 2 3456666666653 2358999999997 34
Q ss_pred CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC--CC
Q 006458 513 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GF 590 (644)
Q Consensus 513 ~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~--G~ 590 (644)
.|.|+|++||+.++.|++|+.+++..|++.++..+....... .+. ..++++.++.|+..+. .+
T Consensus 739 ~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~--------------~~~-~~~~~~a~~~L~~~~~~~~g 803 (854)
T 1qvr_A 739 HFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK--------------RIS-LELTEAAKDFLAERGYDPVF 803 (854)
T ss_dssp TSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT--------------TCE-EEECHHHHHHHHHHHCBTTT
T ss_pred hCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC--------------Cce-EEECHHHHHHHHHcCCCCCC
Confidence 688999999999999999999999999999998765331110 111 2389999999999876 67
Q ss_pred cHHHHHHHHH
Q 006458 591 SGREIAKLMA 600 (644)
Q Consensus 591 SgrdI~~L~~ 600 (644)
+.|+|.+++.
T Consensus 804 n~R~L~~~i~ 813 (854)
T 1qvr_A 804 GARPLRRVIQ 813 (854)
T ss_dssp BTSTHHHHHH
T ss_pred ChHHHHHHHH
Confidence 8899999884
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=9e-25 Score=256.60 Aligned_cols=215 Identities=26% Similarity=0.412 Sum_probs=169.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhc-h----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATAN-T----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~-~----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.+...|++++|.+.+++.|..++..... . .....++.++|||||||||||++|++||..++.+++.++++++..
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 4556799999999999999775543211 1 112246678999999999999999999999999999999999765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDL 514 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~l 514 (644)
+.+.....+..+|..+.... |+||||||+|.|+..+.... .......+++.||..++. ...+++||+|||.++.+
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 55566678899999998776 79999999999988775432 233567889999998863 45689999999999999
Q ss_pred CHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH
Q 006458 515 DSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 592 (644)
Q Consensus 515 d~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg 592 (644)
|+++++ ||+..|+|++|+.++|..||+.++.+... ..+..+..|+..+.||||
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-------------------------~~~~~l~~la~~t~g~sg 684 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------------------AKDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----------------------------CCCCSCSCGGGSSSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC-------------------------CcccCHHHHHHhccccCH
Confidence 999999 99999999999999999999998765321 122245667888999999
Q ss_pred HHHHHHHHHHHHH
Q 006458 593 REIAKLMASVQAA 605 (644)
Q Consensus 593 rdI~~L~~~~~aa 605 (644)
+||..+|..+...
T Consensus 685 adi~~l~~~a~~~ 697 (806)
T 1ypw_A 685 ADLTEICQRACKL 697 (806)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999644433
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=2.4e-22 Score=209.26 Aligned_cols=196 Identities=15% Similarity=0.216 Sum_probs=128.4
Q ss_pred CCccccChHHHHHHH-HHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-CchhHHHHH
Q 006458 370 FGDVILHPSLQKRIR-QLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKI 447 (644)
Q Consensus 370 ~~~vig~~~~~~~l~-~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~-~g~~~~~~l 447 (644)
++++...+.....+. .++..... .....++.++|||||||||||++|++||+.++.+++.++++++.. +.+.....+
T Consensus 6 ~~~~y~~~~~~~~~~~~~~k~~l~-~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i 84 (293)
T 3t15_A 6 LDGFYIAPAFMDKLVVHITKNFLK-LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLI 84 (293)
T ss_dssp ETTEECCHHHHHHHHHHHHHTTSC-CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHH
T ss_pred cCcccCCHHHHHHHHHHHHHHHHh-cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHH
Confidence 455555565555442 22222111 223356689999999999999999999999999999999988644 556677788
Q ss_pred HHHHHHHH---hcCCCeEEEEeccchhhhccccCcC-CHHHHHHHHHHHHHhC-------------CCCCCEEEEEEeCC
Q 006458 448 HQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYM-SEAQRSALNALLFRTG-------------DQSKDIVLALATNR 510 (644)
Q Consensus 448 ~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~-~~~~~~~l~~lL~~~~-------------~~~~~viiI~ttN~ 510 (644)
..+|..+. +...|+||||||+|.+++.+.+... ....+.+++.|+..++ ....+++||+|||.
T Consensus 85 ~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 85 RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 88888883 2445899999999999875443221 1122344455555543 14567999999999
Q ss_pred CCCCCHHHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006458 511 PGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 588 (644)
Q Consensus 511 ~~~ld~al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~ 588 (644)
++.+|+++++ ||+..|+ .|+.++|..|++.++... .++ +..++..+.
T Consensus 165 ~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~--------------------------~~~---~~~l~~~~~ 213 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD--------------------------NVP---AEDVVKIVD 213 (293)
T ss_dssp CCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG--------------------------CCC---HHHHHHHHH
T ss_pred cccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC--------------------------CCC---HHHHHHHhC
Confidence 9999999996 9988887 469999999999776431 134 455666667
Q ss_pred CCcHHHHHH
Q 006458 589 GFSGREIAK 597 (644)
Q Consensus 589 G~SgrdI~~ 597 (644)
||++.+|..
T Consensus 214 ~~~~~~l~~ 222 (293)
T 3t15_A 214 NFPGQSIDF 222 (293)
T ss_dssp HSCSCCHHH
T ss_pred CCCcccHHH
Confidence 788877754
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=1.3e-20 Score=199.34 Aligned_cols=217 Identities=18% Similarity=0.212 Sum_probs=163.3
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHH
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 444 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~ 444 (644)
..+.+|++++|++.++..+..++.... ..+.++.++||+||||||||++|+++++.++.+|+.+++..+...
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~---~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~----- 94 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAK---KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS----- 94 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHH---HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH-----
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHH---hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch-----
Confidence 445579999999999999877665442 233456789999999999999999999999999999999776422
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC---------------CCCCEEEEEEeC
Q 006458 445 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------------QSKDIVLALATN 509 (644)
Q Consensus 445 ~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~---------------~~~~viiI~ttN 509 (644)
..+...+. ....+++|||||+|.+. ......|..++..... ...+++||++||
T Consensus 95 ~~~~~~~~---~~~~~~vl~lDEi~~l~---------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 95 GDLAAILT---NLSEGDILFIDEIHRLS---------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp HHHHHHHH---TCCTTCEEEEETGGGCC---------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred hHHHHHHH---hccCCCEEEEechhhcC---------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 22333332 23458899999999973 2344444444443210 112489999999
Q ss_pred CCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006458 510 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 589 (644)
Q Consensus 510 ~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G 589 (644)
....+++++++||+.++.|++|+.+++..|+..++..... .++++.+..|+..+.|
T Consensus 163 ~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~------------------------~~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 163 RAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK------------------------TCEEKAALEIAKRSRS 218 (338)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC------------------------EECHHHHHHHHHTTTT
T ss_pred CccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999988876421 2688999999997766
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 590 FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 590 ~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
+.|++.+++..+...+.......|+.+++..++...
T Consensus 219 -~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 219 -TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 678899888655444433445789999998887653
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=7.2e-22 Score=206.03 Aligned_cols=220 Identities=24% Similarity=0.286 Sum_probs=157.9
Q ss_pred ccccChHHHHHHHHHHHHhhchh-------ccCCCCccEEEecCCCCChHHHHHHHHHHcC-------CCeEEEeCCCCC
Q 006458 372 DVILHPSLQKRIRQLSGATANTK-------AHNAPFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMTGGDVA 437 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~~~~~~~-------~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-------~~~~~i~~~~l~ 437 (644)
+|+|++.+++.|..++....... ....+..++||+||||||||++|+++|+.++ .+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999999988766443211 1234556899999999999999999999883 489999988875
Q ss_pred C-CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC----
Q 006458 438 P-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---- 512 (644)
Q Consensus 438 ~-~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~---- 512 (644)
. +.+.....+..+|..+ .++||||||+|.|+..+...... ..+++.|+..++....+++||++||.+.
T Consensus 112 ~~~~g~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~---~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA----MGGVLFIDEAYYLYRPDNERDYG---QEAIEILLQVMENNRDDLVVILAGYADRMENF 184 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH----TTSEEEEETGGGSCCCC---CCT---HHHHHHHHHHHHHCTTTCEEEEEECHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc----CCCEEEEEChhhhccCCCccccc---HHHHHHHHHHHhcCCCCEEEEEeCChHHHHHH
Confidence 4 4444555667777665 26899999999997655433323 4466667776666677899999998653
Q ss_pred -CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH-----
Q 006458 513 -DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK----- 586 (644)
Q Consensus 513 -~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~----- 586 (644)
.++|+|++||+.+|+|++|+.+++..|++.++..... .++++.+..++..
T Consensus 185 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~------------------------~~~~~~~~~l~~~~~~~~ 240 (309)
T 3syl_A 185 FQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNY------------------------QMTPEAETALRAYIGLRR 240 (309)
T ss_dssp HHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTC------------------------EECHHHHHHHHHHHHHHT
T ss_pred HhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999999987432 2788888888886
Q ss_pred --cCCCcHHHHHHHHHHHHHHH----hCCCCCccCHHHHHHH
Q 006458 587 --TEGFSGREIAKLMASVQAAV----YGSENCVLDPSLFREV 622 (644)
Q Consensus 587 --t~G~SgrdI~~L~~~~~aa~----~~~~~~~lt~~~~~~a 622 (644)
....++|++..++..+.... .......++.+++..+
T Consensus 241 ~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i 282 (309)
T 3syl_A 241 NQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTI 282 (309)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEE
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhc
Confidence 33346899999885433211 1112355666555433
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.86 E-value=6e-21 Score=203.96 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=161.7
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC--CeEEEeCCCCCCCc---
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAPLG--- 440 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~--~~~~i~~~~l~~~g--- 440 (644)
|...|+++||++..+..+..+........ .++.++||+||||||||++|+++++.++. +++.+++..+....
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREGK---IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTTC---CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCH
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccch
Confidence 44459999999999998877766554332 34578999999999999999999999974 77777765532210
Q ss_pred -----------------------------------------------hhHHHHHHHHHHHHHh----cCC----CeEEEE
Q 006458 441 -----------------------------------------------PQAVTKIHQLFDWAKK----SKR----GLLLFI 465 (644)
Q Consensus 441 -----------------------------------------------~~~~~~l~~~f~~a~~----~~~----~~VL~I 465 (644)
+.....+...+..+.. ... |+||||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 1112233344433322 111 579999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe-----------CCCCCCCHHHhcccceeEecCCCCHH
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-----------NRPGDLDSAVADRIDEVLEFPLPGQE 534 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt-----------N~~~~ld~al~~Rfd~~i~~~~p~~~ 534 (644)
||+|.|. ...++.|+..++....+++++++. |.+..++++|++||. .+.|++|+.+
T Consensus 196 DEi~~l~------------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~i~~~~~~~~ 262 (368)
T 3uk6_A 196 DEVHMLD------------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-IVSTTPYSEK 262 (368)
T ss_dssp ESGGGSB------------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-EEEECCCCHH
T ss_pred hhccccC------------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-EEEecCCCHH
Confidence 9999972 235666666676666666655554 347789999999995 4899999999
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCcc
Q 006458 535 ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 614 (644)
Q Consensus 535 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~l 614 (644)
++..|++.++..... .++++.+..|+..+.|.++|++..+|..+...+...+...|
T Consensus 263 e~~~il~~~~~~~~~------------------------~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~I 318 (368)
T 3uk6_A 263 DTKQILRIRCEEEDV------------------------EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEV 318 (368)
T ss_dssp HHHHHHHHHHHHTTC------------------------CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred HHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999998875321 27899999999999856999999999766555555566899
Q ss_pred CHHHHHHHHHHH
Q 006458 615 DPSLFREVVDYK 626 (644)
Q Consensus 615 t~~~~~~al~~~ 626 (644)
|.+++..+++..
T Consensus 319 t~~~v~~a~~~~ 330 (368)
T 3uk6_A 319 QVDDIKRVYSLF 330 (368)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHHh
Confidence 999999999863
No 33
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.85 E-value=2.7e-20 Score=217.95 Aligned_cols=237 Identities=17% Similarity=0.197 Sum_probs=164.4
Q ss_pred hhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHh-hchhc
Q 006458 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGAT-ANTKA 395 (644)
Q Consensus 317 ~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~-~~~~~ 395 (644)
...+..++..|+| +|+..+.......+..+...+ .++|+|++.++..+...+... .....
T Consensus 456 ~~~i~~~v~~~~~------------ip~~~~~~~~~~~l~~l~~~l-------~~~viGq~~a~~~l~~~i~~~~~~~~~ 516 (758)
T 3pxi_A 456 VDDIAMVVSSWTG------------VPVSKIAQTETDKLLNMENIL-------HSRVIGQDEAVVAVAKAVRRARAGLKD 516 (758)
T ss_dssp THHHHHHHHTTC-------------------CHHHHSCC-CHHHHH-------HTTSCSCHHHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHhC------------CChHHhhHHHHHHHHHHHHHH-------hCcCcChHHHHHHHHHHHHHHHcccCC
Confidence 4567777888888 777766666666666666665 678999999998887655443 33444
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhh
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFL 472 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~ 472 (644)
++.|..++||+||||||||++|++||+.+ +.+++.++|+.+........+. +..+.+..+++||||||||.+
T Consensus 517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~----l~~~~~~~~~~vl~lDEi~~~- 591 (758)
T 3pxi_A 517 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ----LTEKVRRKPYSVVLLDAIEKA- 591 (758)
T ss_dssp TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS-
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch----hhHHHHhCCCeEEEEeCcccc-
Confidence 55666789999999999999999999997 6889999999886632222222 222344456899999999986
Q ss_pred hccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCCCC------------CCHHHhcccceeEecCCCC
Q 006458 473 CERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRPGD------------LDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 473 ~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~ttN~~~~------------ld~al~~Rfd~~i~~~~p~ 532 (644)
+......|..++..-. ..+.+++||+|||.+.. |.|+|++||+.+|.|++|+
T Consensus 592 --------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~ 663 (758)
T 3pxi_A 592 --------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLE 663 (758)
T ss_dssp --------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--C
T ss_pred --------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCC
Confidence 3344445555554311 14568899999997654 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCcHHHHHHHHH
Q 006458 533 QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK--TEGFSGREIAKLMA 600 (644)
Q Consensus 533 ~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~--t~G~SgrdI~~L~~ 600 (644)
.+++..|++.++..+....... ++. ..++++.++.|+.. ...+..|+|.+++.
T Consensus 664 ~~~~~~i~~~~l~~~~~~~~~~--------------~~~-~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 664 KKHLTEIVSLMSDQLTKRLKEQ--------------DLS-IELTDAAKAKVAEEGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--------------TCE-EEECHHHHHHHHGGGCCTTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--------------CCe-EEECHHHHHHHHHhCCCCCCCChHHHHHHH
Confidence 9999999999998764331110 111 13899999999875 34567788888874
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=6.6e-21 Score=198.13 Aligned_cols=241 Identities=18% Similarity=0.246 Sum_probs=161.4
Q ss_pred CCccccChHHHHHHHHHHHHh-hch-----hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC---Cc
Q 006458 370 FGDVILHPSLQKRIRQLSGAT-ANT-----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LG 440 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~-~~~-----~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~---~g 440 (644)
-++|+|++.++..+...+... ... ...+.++.++||+||||||||++|+++++.++.+++.++++.+.. .+
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~ 93 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGG
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccC
Confidence 356899999999997655431 110 011234578999999999999999999999999999999988754 23
Q ss_pred hhHHHHHHHHHHHH----HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC----------CCCCEEEEE
Q 006458 441 PQAVTKIHQLFDWA----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLAL 506 (644)
Q Consensus 441 ~~~~~~l~~~f~~a----~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----------~~~~viiI~ 506 (644)
......+..++..+ ....+++||||||+|.+...............+.+.|+..++. ...+++||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 94 KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp GSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred ccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 22233455555422 1112368999999999976654333222233345666655543 235788888
Q ss_pred Ee----CCCCCCCHHHhcccceeEecCCCCHHHHHHHHHH----HHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHH
Q 006458 507 AT----NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDD 578 (644)
Q Consensus 507 tt----N~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 578 (644)
++ +.+..+++++++||+.+|+|++|+.+++..|++. ++..+... +... ... ..++++
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~------------~~~~--~~~-~~~~~~ 238 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKAL------------MATE--GVN-IAFTTD 238 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH------------HHHT--TCE-EEECHH
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHH------------HHhc--CCe-eccCHH
Confidence 84 5678899999999998999999999999999994 33332111 0000 111 137899
Q ss_pred HHHHHHHHcC-------CCcHHHHHHHHHHHHHH-----HhCCCC-CccCHHHHHHHHHH
Q 006458 579 ILMEAAAKTE-------GFSGREIAKLMASVQAA-----VYGSEN-CVLDPSLFREVVDY 625 (644)
Q Consensus 579 ~l~~LA~~t~-------G~SgrdI~~L~~~~~aa-----~~~~~~-~~lt~~~~~~al~~ 625 (644)
.++.|+..+. +.+.|++..++..+... ....+. ..||.+++.+++..
T Consensus 239 a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 239 AVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 9999999873 45889999988543311 111121 25999999998864
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=1.8e-20 Score=206.93 Aligned_cols=231 Identities=15% Similarity=0.166 Sum_probs=175.3
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC--CCeEEEeCCCCCC-Cchh
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAP-LGPQ 442 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~--~~~~~i~~~~l~~-~g~~ 442 (644)
+...|++|+|++.++..+..++..... +..|++++|||||||||||++|+++|+.++ .+|+.++++++.. +.+.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~~---~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~ 108 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIKS---KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKK 108 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT---TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCH
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHHh---CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhh
Confidence 344589999999999998887755433 334668999999999999999999999999 9999999998865 3344
Q ss_pred HHHHHHHHHHHHH--hcCCCeEEEEeccchhhhccccCc-----------------------------------------
Q 006458 443 AVTKIHQLFDWAK--KSKRGLLLFIDEADAFLCERNKTY----------------------------------------- 479 (644)
Q Consensus 443 ~~~~l~~~f~~a~--~~~~~~VL~IDEid~l~~~r~~~~----------------------------------------- 479 (644)
.. .+...|..+. +...|+||||||+|.+++.+....
T Consensus 109 ~~-~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~ 187 (456)
T 2c9o_A 109 TE-VLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEA 187 (456)
T ss_dssp HH-HHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCT
T ss_pred hH-HHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCC
Confidence 44 4888898872 233489999999998875432210
Q ss_pred ------------------------------------CCH-----------------------------------------
Q 006458 480 ------------------------------------MSE----------------------------------------- 482 (644)
Q Consensus 480 ------------------------------------~~~----------------------------------------- 482 (644)
...
T Consensus 188 ~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i~~p~ 267 (456)
T 2c9o_A 188 GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPK 267 (456)
T ss_dssp TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC--------------------
T ss_pred CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhhcccc
Confidence 000
Q ss_pred ---------------------------------------HHHHHHHHHHHHhCCCCCCEEEEEEeCC-------------
Q 006458 483 ---------------------------------------AQRSALNALLFRTGDQSKDIVLALATNR------------- 510 (644)
Q Consensus 483 ---------------------------------------~~~~~l~~lL~~~~~~~~~viiI~ttN~------------- 510 (644)
.....++.|+..+++.+.+ +||++||.
T Consensus 268 ~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~ 346 (456)
T 2c9o_A 268 KTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITS 346 (456)
T ss_dssp ---------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccc
Confidence 0013577777778777777 46655533
Q ss_pred CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc-CC
Q 006458 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-EG 589 (644)
Q Consensus 511 ~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-~G 589 (644)
+..+++.+++|| ..+.|++|+.+++..||+..+..... .++++.+..|+..+ .|
T Consensus 347 ~~~l~~~i~sR~-~~~~~~~~~~~e~~~iL~~~~~~~~~------------------------~~~~~~~~~i~~~a~~g 401 (456)
T 2c9o_A 347 PHGIPLDLLDRV-MIIRTMLYTPQEMKQIIKIRAQTEGI------------------------NISEEALNHLGEIGTKT 401 (456)
T ss_dssp ETTCCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CBCHHHHHHHHHHHHHS
T ss_pred cccCChhHHhhc-ceeeCCCCCHHHHHHHHHHHHHHhCC------------------------CCCHHHHHHHHHHccCC
Confidence 778999999999 45799999999999999998864321 27899999999988 66
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 590 FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 590 ~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
++|....|+..+...++..+...||.+++..++....
T Consensus 402 -~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 402 -TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp -CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred -CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 8898888888776666656668999999999987753
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=1.1e-20 Score=212.79 Aligned_cols=263 Identities=17% Similarity=0.233 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHHhhchhcc
Q 006458 317 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAH 396 (644)
Q Consensus 317 ~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~ 396 (644)
..++..|++++++ +||...... ...+......+ .++++|.++++..+...........
T Consensus 47 ~~~~~~~l~~~~~------------lp~~~~~~~-~~~~~~~~~~l-------~~di~G~~~vk~~i~~~~~l~~~~~-- 104 (543)
T 3m6a_A 47 SSVIRNYIDWLVA------------LPWTDETDD-KLDLKEAGRLL-------DEEHHGLEKVKERILEYLAVQKLTK-- 104 (543)
T ss_dssp TTHHHHHHHHHHH------------SCSSCCCCC-CCCTTTGGGTH-------HHHCSSCHHHHHHHHHHHHHHHHSS--
T ss_pred HhHHHHHHHHHhc------------CCCCccccc-cccHHHHHHHH-------HHHhccHHHHHHHHHHHHHHHHhcc--
Confidence 4589999999999 888654322 22233333333 5779999999999866443222111
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----------CchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------LGPQAVTKIHQLFDWAKKSKRGLLLFID 466 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----------~g~~~~~~l~~~f~~a~~~~~~~VL~ID 466 (644)
..+..++||+||||||||+++++|+..++.++..++++.+.. +.+.....+...|..+... ..|||||
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~--~~vl~lD 182 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKL--NPVFLLD 182 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSS--SEEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhcc--CCEEEEh
Confidence 125568999999999999999999999999999998876432 1122233444555555433 3499999
Q ss_pred ccchhhhccccCcCCHHHHHHHHHHHHHhCC---------------CCCCEEEEEEeCCCCCCCHHHhcccceeEecCCC
Q 006458 467 EADAFLCERNKTYMSEAQRSALNALLFRTGD---------------QSKDIVLALATNRPGDLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 467 Eid~l~~~r~~~~~~~~~~~~l~~lL~~~~~---------------~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p 531 (644)
|+|.+..... ....+.|+..++. +..+++||+|||.++.++++|++|| .+|+|+.|
T Consensus 183 Eid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~ 253 (543)
T 3m6a_A 183 EIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM-EIINIAGY 253 (543)
T ss_dssp ESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE-EEEECCCC
T ss_pred hhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhc-ceeeeCCC
Confidence 9999865432 1134455555532 1267899999999999999999999 58999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCC-CcHHHHHHHH----HHHHHHH
Q 006458 532 GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG-FSGREIAKLM----ASVQAAV 606 (644)
Q Consensus 532 ~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G-~SgrdI~~L~----~~~~aa~ 606 (644)
+.+++..|+..++-.......... ... -.++++.+..|+..+.+ ...|+|.+.+ ..+....
T Consensus 254 ~~~e~~~Il~~~l~~~~~~~~~~~-----------~~~---i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~ 319 (543)
T 3m6a_A 254 TEIEKLEIVKDHLLPKQIKEHGLK-----------KSN---LQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAI 319 (543)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTTCC-----------GGG---CEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCC-----------ccc---ccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHH
Confidence 999999999998854322211000 001 12688999998875543 4556666554 3221111
Q ss_pred hC--CCCCccCHHHHHHHHHHH
Q 006458 607 YG--SENCVLDPSLFREVVDYK 626 (644)
Q Consensus 607 ~~--~~~~~lt~~~~~~al~~~ 626 (644)
.. .....||.+++.+++...
T Consensus 320 ~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 320 VAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HTTCCSCCEECTTTTHHHHCSC
T ss_pred HhcCCcceecCHHHHHHHhCCc
Confidence 11 233578999999887644
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=7.5e-20 Score=191.89 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=161.3
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHH
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 444 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~ 444 (644)
..+.+|+++||.+..+..+..++...... +.++.++||+||||||||++|+++++.++.+++.++++.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~---~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~----- 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR---KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----- 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH---CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-----
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc---CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-----
Confidence 34557999999999998887766544321 2344679999999999999999999999999999998776431
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC------C---------CCCCEEEEEEe
Q 006458 445 TKIHQLFDWAKK-SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------D---------QSKDIVLALAT 508 (644)
Q Consensus 445 ~~l~~~f~~a~~-~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~------~---------~~~~viiI~tt 508 (644)
..+... ... ...+++|||||+|.+. ......+..++.... . ...++++|++|
T Consensus 78 ~~l~~~---l~~~~~~~~~l~lDEi~~l~---------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 78 GDLAAI---LANSLEEGDILFIDEIHRLS---------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp HHHHHH---HTTTCCTTCEEEETTTTSCC---------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred HHHHHH---HHHhccCCCEEEEECCcccc---------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 222222 222 3457899999999873 234444555554421 0 11368899999
Q ss_pred CCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006458 509 NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 588 (644)
Q Consensus 509 N~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~ 588 (644)
|.+..+++++.+||+.++.|++|+.+++..++..++..... .++++.+..|+..+.
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~ 201 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV------------------------RITEEAALEIGRRSR 201 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC------------------------CCCHHHHHHHHHHSC
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHcc
Confidence 99999999999999889999999999999999888764321 278899999999996
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 589 GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 589 G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
| +++++..++..+...+.......|+.+++..++..
T Consensus 202 G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 202 G-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp S-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 6 67889888875554444445568999998887754
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=9.3e-21 Score=199.35 Aligned_cols=213 Identities=18% Similarity=0.264 Sum_probs=145.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhH
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 443 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~ 443 (644)
.+.+.+|++++|++.+...+..++. .+.++..+|++||||||||++++++++.++.+++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~-------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~------ 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITS-------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK------ 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHH-------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC------
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHH-------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC------
Confidence 4566789999999999988877654 233445688889999999999999999999999999987743
Q ss_pred HHHHHHHHHH-HHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHh
Q 006458 444 VTKIHQLFDW-AKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVA 519 (644)
Q Consensus 444 ~~~l~~~f~~-a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~ 519 (644)
...+...+.. +... ..++||||||+|.+.. ...... |+..++....++.||+|||.+..+++++.
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------~~~~~~---L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 86 IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------AESQRH---LRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------HHHHHH---HHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------HHHHHH---HHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 2233333333 2221 2578999999999841 123333 44444434567899999999999999999
Q ss_pred cccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH-HHHHHHHHHcCCCcHHHHHHH
Q 006458 520 DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD-DILMEAAAKTEGFSGREIAKL 598 (644)
Q Consensus 520 ~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~LA~~t~G~SgrdI~~L 598 (644)
+|| .++.|++|+.+++..|+..++..+.... . ..++ .+++ +.+..|+..+.| +++.+
T Consensus 155 sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~------------~--~~~~---~~~~~~~~~~l~~~~~g----d~R~a 212 (324)
T 3u61_B 155 SRC-RVITFGQPTDEDKIEMMKQMIRRLTEIC------------K--HEGI---AIADMKVVAALVKKNFP----DFRKT 212 (324)
T ss_dssp HHS-EEEECCCCCHHHHHHHHHHHHHHHHHHH------------H--HHTC---CBSCHHHHHHHHHHTCS----CTTHH
T ss_pred hhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHH------------H--HcCC---CCCcHHHHHHHHHhCCC----CHHHH
Confidence 999 6899999999999998888776543210 0 0111 2666 899999999766 44445
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 599 MASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 599 ~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
+..++.++ ....||.+++..++..
T Consensus 213 ~~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 213 IGELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHG---GGTCBCC---------
T ss_pred HHHHHHHh---ccCCCCHHHHHHHhCC
Confidence 55555554 2356888888776554
No 39
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.83 E-value=1.3e-19 Score=212.10 Aligned_cols=238 Identities=17% Similarity=0.203 Sum_probs=168.0
Q ss_pred chhHHHHHHHHHhCCCCcccccCCCcccCCcchhhhhhccccchhhhhccCCCCCCccccChHHHHHHHHHHHH-hhchh
Q 006458 316 GAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGA-TANTK 394 (644)
Q Consensus 316 ~~~v~~~~i~~~~gkpslvre~sr~~~p~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~ 394 (644)
....+...+..|+| +||..+.......+..+...+ ..+|+|++.++..|...+.. .....
T Consensus 422 ~~~di~~~~~~~~~------------ip~~~~~~~~~~~l~~l~~~l-------~~~v~g~~~~~~~l~~~i~~~~~g~~ 482 (758)
T 1r6b_X 422 NVADIESVVARIAR------------IPEKSVSQSDRDTLKNLGDRL-------KMLVFGQDKAIEALTEAIKMARAGLG 482 (758)
T ss_dssp CHHHHHHHHHHHSC------------CCCCCSSSSHHHHHHHHHHHH-------TTTSCSCHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHhcC------------CCccccchhHHHHHHHHHHHH-------HhhccCHHHHHHHHHHHHHHHhcccC
Confidence 34566777777777 666555555555555555555 67899999999988665443 33344
Q ss_pred ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCC-----------chhHHHHHHHHHHHHHhcCCCeEE
Q 006458 395 AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL-----------GPQAVTKIHQLFDWAKKSKRGLLL 463 (644)
Q Consensus 395 ~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~-----------g~~~~~~l~~~f~~a~~~~~~~VL 463 (644)
.++.|..++||+||||||||++|+++++.++.+++.++++++... |.-+......+. .+.+..+++||
T Consensus 483 ~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~-~~~~~~~~~vl 561 (758)
T 1r6b_X 483 HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLT-DAVIKHPHAVL 561 (758)
T ss_dssp CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHH-HHHHHCSSEEE
T ss_pred CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHH-HHHHhCCCcEE
Confidence 555677789999999999999999999999999999998876331 111111111122 23334568999
Q ss_pred EEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-----------CCCCEEEEEEeCCCC--------------------
Q 006458 464 FIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRPG-------------------- 512 (644)
Q Consensus 464 ~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-----------~~~~viiI~ttN~~~-------------------- 512 (644)
||||+|++ +.. +++.|++.+++ +..+++||+|||.+.
T Consensus 562 ~lDEi~~~---------~~~---~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 562 LLDEIEKA---------HPD---VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp EEETGGGS---------CHH---HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CH
T ss_pred EEeCcccc---------CHH---HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 99999986 223 45555554432 136899999999854
Q ss_pred -----CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006458 513 -----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 587 (644)
Q Consensus 513 -----~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t 587 (644)
.++|+|++||+.+|.|++|+.+++..|++.++.++.... .. ..+. -.++++.++.|+..+
T Consensus 630 ~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~------------~~--~~~~-~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 630 EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL------------DQ--KGVS-LEVSQEARNWLAEKG 694 (758)
T ss_dssp HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHH------------HH--TTEE-EEECHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHH------------HH--CCcE-EEeCHHHHHHHHHhC
Confidence 688999999999999999999999999999998754321 10 0111 137899999999875
Q ss_pred --CCCcHHHHHHHHH
Q 006458 588 --EGFSGREIAKLMA 600 (644)
Q Consensus 588 --~G~SgrdI~~L~~ 600 (644)
.+++.|+|..++.
T Consensus 695 ~~~~~g~R~l~~~i~ 709 (758)
T 1r6b_X 695 YDRAMGARPMARVIQ 709 (758)
T ss_dssp CBTTTBTTTHHHHHH
T ss_pred CCcCCCchHHHHHHH
Confidence 3556889888874
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.82 E-value=8.1e-19 Score=171.92 Aligned_cols=204 Identities=22% Similarity=0.224 Sum_probs=147.0
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAPL 439 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~~ 439 (644)
..+..|++++|++.....+..++... ...++||+||||||||++++.+++.+ ...++.++++.....
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT--------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 45567999999999988887765321 22359999999999999999999886 356777777654321
Q ss_pred chhHHHHHHHHHHHHHh-----cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006458 440 GPQAVTKIHQLFDWAKK-----SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDL 514 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~-----~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~l 514 (644)
..+...+..... ...++||||||+|.+.. .. ++.++..++....++++|++||.+..+
T Consensus 83 -----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~~---~~~l~~~l~~~~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 83 -----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------DA---QAALRRTMEMYSKSCRFILSCNYVSRI 145 (226)
T ss_dssp -----HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------HH---HHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred -----HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------HH---HHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 122222222221 24578999999999732 22 333444444456788999999999999
Q ss_pred CHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 515 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 515 d~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
++.+.+||. .+.|++|+.+++..++..++..... .++++.+..|+..+.| +.+.
T Consensus 146 ~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~g-~~r~ 199 (226)
T 2chg_A 146 IEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV------------------------KITEDGLEALIYISGG-DFRK 199 (226)
T ss_dssp CHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTC------------------------CBCHHHHHHHHHHHTT-CHHH
T ss_pred CHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CHHH
Confidence 999999995 9999999999999999988765421 2688899999988866 5666
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 595 IAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 595 I~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
+.+++..+ +... ..||.++++.++.
T Consensus 200 l~~~l~~~---~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 200 AINALQGA---AAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHH---HHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHH---HhcC--ceecHHHHHHHhc
Confidence 66655432 2222 6899999999875
No 41
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.82 E-value=5.2e-20 Score=216.20 Aligned_cols=209 Identities=29% Similarity=0.469 Sum_probs=167.9
Q ss_pred cCCCCCCccccChHHHHHHHHHHHH-hhchhc----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGA-TANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~-~~~~~~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~- 438 (644)
.+..+|++|+|.+..++.|..++.. ...+.. ...++.++|||||||||||+++++||..++.+++.+++.++..
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4557899999999999999876654 322221 2356678999999999999999999999999999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCCCCCCCH
Q 006458 439 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDS 516 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~~~~ld~ 516 (644)
+.+.....+..+|..+.... |++|||||+|.++..+.... ......++..++..++. ...++++|++||.++.+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~-~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTSCCC-SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhcccccc-chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 55667778889999988765 89999999999987765432 34456667777776652 3467899999999999999
Q ss_pred HHhc--ccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~--Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
++.+ ||+..+.++.|+.++|..||+.++..+.. ..+..+..++..+.||++++
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-------------------------~~~~~l~~la~~t~g~~g~d 410 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------------------ADDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-------------------------CTTCCTHHHHHSCSSCCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-------------------------cccchhHHHHHhhcCcchHH
Confidence 9998 99999999999999999999987654321 23335788999999999999
Q ss_pred HHHHHH
Q 006458 595 IAKLMA 600 (644)
Q Consensus 595 I~~L~~ 600 (644)
+..++.
T Consensus 411 l~~l~~ 416 (806)
T 1ypw_A 411 LAALCS 416 (806)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.81 E-value=6.9e-19 Score=193.44 Aligned_cols=215 Identities=24% Similarity=0.311 Sum_probs=151.1
Q ss_pred cCCCCCCccccChHHH---HHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCch
Q 006458 365 KNGNGFGDVILHPSLQ---KRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGP 441 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~---~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~ 441 (644)
..+.+|+++||++.+. ..+...+... .+.++|||||||||||++|+.|++.++.+++.+++....
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~--------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---- 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG--------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---- 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT--------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC----
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC--------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC----
Confidence 3456799999999998 5554444321 125799999999999999999999999999999875432
Q ss_pred hHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEe--CCCCCCCH
Q 006458 442 QAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLDS 516 (644)
Q Consensus 442 ~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~tt--N~~~~ld~ 516 (644)
...+..++..+.. ...++||||||+|.|.. . .++.|+..++. ..++||++| |....+++
T Consensus 88 --~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------~---~q~~LL~~le~--~~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 88 --VKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------S---QQDAFLPHIED--GTITFIGATTENPSFELNS 151 (447)
T ss_dssp --HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT--TSCEEEEEESSCGGGSSCH
T ss_pred --HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------H---HHHHHHHHHhc--CceEEEecCCCCcccccCH
Confidence 3344555555442 34578999999999732 1 23334444433 457777766 55568999
Q ss_pred HHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHH
Q 006458 517 AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIA 596 (644)
Q Consensus 517 al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~ 596 (644)
+|++|| .++.|++|+.+++..|+..++.......+. .. ..++++.++.|+..+.| +.|++.
T Consensus 152 aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~--------------~~---~~i~~~al~~L~~~~~G-d~R~ll 212 (447)
T 3pvs_A 152 ALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGG--------------QD---IVLPDETRRAIAELVNG-DARRAL 212 (447)
T ss_dssp HHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTT--------------SS---EECCHHHHHHHHHHHCS-CHHHHH
T ss_pred HHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhcc--------------cc---CcCCHHHHHHHHHHCCC-CHHHHH
Confidence 999999 588899999999999999998753211000 01 13899999999999866 777888
Q ss_pred HHHHHHHHHHhCC--CCCccCHHHHHHHHHHH
Q 006458 597 KLMASVQAAVYGS--ENCVLDPSLFREVVDYK 626 (644)
Q Consensus 597 ~L~~~~~aa~~~~--~~~~lt~~~~~~al~~~ 626 (644)
+++..+...+... +...||.+++.+++...
T Consensus 213 n~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 213 NTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 8776544443322 33689999999988743
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.81 E-value=7.2e-19 Score=183.30 Aligned_cols=206 Identities=17% Similarity=0.211 Sum_probs=147.2
Q ss_pred CCccccChHHHHHHHHHHHHhh-chhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHH
Q 006458 370 FGDVILHPSLQKRIRQLSGATA-NTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~-~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~ 445 (644)
.++++|++.++..+...+.... ....+..|..++||+||||||||++|++|+..+ +.+++.++++.+..... ..
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~--~~ 93 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA--VS 93 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH--HH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc--HH
Confidence 5778999999999877554433 334445566689999999999999999999998 56699999877643210 00
Q ss_pred HH------------HHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEE
Q 006458 446 KI------------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLA 505 (644)
Q Consensus 446 ~l------------~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI 505 (644)
.+ ...+..+....+++||||||+|.+ +......|..++.... ....+++||
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI 164 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA---------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVII 164 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc---------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEE
Confidence 00 012333444455799999999997 3344444444444321 112478899
Q ss_pred EEeCC--------------------------CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcc
Q 006458 506 LATNR--------------------------PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLV 559 (644)
Q Consensus 506 ~ttN~--------------------------~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~ 559 (644)
+|||. ...++++|++||+.++.|++|+.+++..|++.++.++.......
T Consensus 165 ~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~----- 239 (311)
T 4fcw_A 165 MTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK----- 239 (311)
T ss_dssp EEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT-----
T ss_pred EecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 99998 45789999999999999999999999999999998765331110
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHcC--CCcHHHHHHHHHH
Q 006458 560 HRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSGREIAKLMAS 601 (644)
Q Consensus 560 ~~~~~~~~~~~~~~~~~d~~l~~LA~~t~--G~SgrdI~~L~~~ 601 (644)
+.. ..++++.+..|+..+. .++.|+|.+++..
T Consensus 240 ---------~~~-~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~ 273 (311)
T 4fcw_A 240 ---------RIS-LELTEAAKDFLAERGYDPVFGARPLRRVIQR 273 (311)
T ss_dssp ---------TCE-EEECHHHHHHHHHHSCBTTTBTTTHHHHHHH
T ss_pred ---------CcE-EEeCHHHHHHHHHhCCCccCCchhHHHHHHH
Confidence 011 2389999999999876 6788999998853
No 44
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.80 E-value=2.6e-18 Score=170.17 Aligned_cols=205 Identities=21% Similarity=0.216 Sum_probs=149.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCe----------------
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY---------------- 428 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~---------------- 428 (644)
..+..|++++|.+.....+...+.. +..+..++|+||||||||++++.+++.++...
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4555689999999998888766532 22334699999999999999999999875422
Q ss_pred --------EEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC
Q 006458 429 --------ALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 497 (644)
Q Consensus 429 --------~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~ 497 (644)
+.++.. .......+..++..+.. ...+.||||||+|.+. ...++.++..++.
T Consensus 90 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~~l~~ 152 (250)
T 1njg_A 90 EQGRFVDLIEIDAA-----SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEE 152 (250)
T ss_dssp HTTCCSSEEEEETT-----CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHHHHHS
T ss_pred hccCCcceEEecCc-----ccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHHHHHHHHHHhc
Confidence 111111 11223334444444321 2346899999999862 1245556666666
Q ss_pred CCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 498 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 498 ~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
...++++|++||.+..+++.+.+|+ ..++|++|+.++...++..++..... .+++
T Consensus 153 ~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~------------------------~~~~ 207 (250)
T 1njg_A 153 PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI------------------------AHEP 207 (250)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTC------------------------CBCH
T ss_pred CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCC------------------------CCCH
Confidence 6778999999999999999999998 89999999999999999988865321 2688
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 578 DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 578 ~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
+.+..|+..+.| +++.+..++..+ +.++. ..||.+++++++
T Consensus 208 ~~~~~l~~~~~G-~~~~~~~~~~~~--~~~~~--~~i~~~~v~~~~ 248 (250)
T 1njg_A 208 RALQLLARAAEG-SLRDALSLTDQA--IASGD--GQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH--HTTTT--SSBCHHHHHHHS
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHH--HhccC--ceecHHHHHHHh
Confidence 899999999977 788888888643 33433 489999999876
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.80 E-value=4.2e-18 Score=181.99 Aligned_cols=227 Identities=16% Similarity=0.114 Sum_probs=162.4
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---------CCCeEEEeCCCCCC
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGDVAP 438 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---------~~~~~~i~~~~l~~ 438 (644)
..+++++|.+.....+..++.... .+..+.+++|+||||||||++++.+++.+ +.+++.+++.....
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~----~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL----RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT----SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH----cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 346889999988888866543321 12344689999999999999999999988 78899999876432
Q ss_pred C------------------chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCC--
Q 006458 439 L------------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ-- 498 (644)
Q Consensus 439 ~------------------g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~-- 498 (644)
. +......+..++........++||||||+|.+...+ .....+..++......
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQELGD 164 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhcCC
Confidence 1 111222244455555445557899999999984321 1345677777766433
Q ss_pred CCCEEEEEEeCCC---CCCCHHHhcccce-eEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 499 SKDIVLALATNRP---GDLDSAVADRIDE-VLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 499 ~~~viiI~ttN~~---~~ld~al~~Rfd~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
..+++||++||.+ ..+++.+.+||.. .+.|++|+.+++..|+..++...... ..
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~----------------------~~ 222 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP----------------------GV 222 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT----------------------TT
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC----------------------CC
Confidence 6688999999987 7889999999976 89999999999999999988642100 12
Q ss_pred CCHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 575 LTDDILMEAAAKTE---GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 575 ~~d~~l~~LA~~t~---G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
++++.+..++..+. | .+|.+..++..+...+...+...||.+++..++.....
T Consensus 223 ~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 223 LDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp BCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 67778899998886 6 67778788765544444445578999999999887643
No 46
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=7.3e-19 Score=188.20 Aligned_cols=236 Identities=19% Similarity=0.249 Sum_probs=153.4
Q ss_pred ccccChHHHHHHHHHHH-Hhhchhc------cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCC---ch
Q 006458 372 DVILHPSLQKRIRQLSG-ATANTKA------HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL---GP 441 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~-~~~~~~~------~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~---g~ 441 (644)
.|+|++.++..|...+. ....... ...++.++||+||||||||++|++||+.++.+|+.++++.+... |.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47899999999876553 2221111 11356789999999999999999999999999999999887642 22
Q ss_pred hHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCC--HHHHHHHHHHHHHhCC-------------------
Q 006458 442 QAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMS--EAQRSALNALLFRTGD------------------- 497 (644)
Q Consensus 442 ~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~--~~~~~~l~~lL~~~~~------------------- 497 (644)
.....+..+|..+. ....++||||||+|.+...+.+...+ .....+++.||..++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 22344555655441 11237899999999998765443221 1222355555555441
Q ss_pred --CCCCEEEEEEeCCC----------CC-----------------------------------CCHHHhcccceeEecCC
Q 006458 498 --QSKDIVLALATNRP----------GD-----------------------------------LDSAVADRIDEVLEFPL 530 (644)
Q Consensus 498 --~~~~viiI~ttN~~----------~~-----------------------------------ld~al~~Rfd~~i~~~~ 530 (644)
...|++||+++|.. .. |.|+|++||+.++.|++
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 23456666666642 11 79999999999999999
Q ss_pred CCHHHHHHHHHH----HHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH--cCCCcHHHHHHHHHHH-H
Q 006458 531 PGQEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK--TEGFSGREIAKLMASV-Q 603 (644)
Q Consensus 531 p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~--t~G~SgrdI~~L~~~~-~ 603 (644)
|+.+++..|+.. ++.++... +... ++. ..++++.++.|+.. ...+..|+|.+++..+ .
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~------------~~~~--~~~-l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQAL------------FNLE--GVD-LEFRDEALDAIAKKAMARKTGARGLRSIVEAALL 320 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHH------------HHTT--TCE-EEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH------------HHhc--Cce-EEECHHHHHHHHHhhcCCccCchHHHHHHHHHHH
Confidence 999999999997 55443321 1100 111 13789999999974 4566779999988433 3
Q ss_pred HHHhCC--C----CCccCHHHHHHH
Q 006458 604 AAVYGS--E----NCVLDPSLFREV 622 (644)
Q Consensus 604 aa~~~~--~----~~~lt~~~~~~a 622 (644)
...+.- . ...||.+++++.
T Consensus 321 ~~l~~~~~~~~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 321 DTMYDLPSMEDVEKVVIDESVIDGQ 345 (363)
T ss_dssp HHHHSTTTCCCSEEEECHHHHTTCC
T ss_pred HHHHhcccccCCceeEEcHHHHhCc
Confidence 333321 1 135777776554
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=8.5e-19 Score=179.92 Aligned_cols=202 Identities=21% Similarity=0.282 Sum_probs=134.6
Q ss_pred CCccccChHHHHHHHH----HHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC-CC-CchhH
Q 006458 370 FGDVILHPSLQKRIRQ----LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV-AP-LGPQA 443 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~----l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l-~~-~g~~~ 443 (644)
..+++|.+.....+.. +...... ....++.++||+||||||||++|+++|+.++.+|+.+++++. .. .....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~--~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKN--SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHH--CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhc--cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4668888776555544 2222221 123456789999999999999999999999999999987652 22 22233
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhhhccccC-cCCHHHHHHHHHHHHHhC---CCCCCEEEEEEeCCCCCCCH-HH
Q 006458 444 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT-YMSEAQRSALNALLFRTG---DQSKDIVLALATNRPGDLDS-AV 518 (644)
Q Consensus 444 ~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~-~~~~~~~~~l~~lL~~~~---~~~~~viiI~ttN~~~~ld~-al 518 (644)
...+..+|..+... +++||||||+|.|++.+... .... ..++.|+..++ ....+++||+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~---~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKS-QLSCVVVDDIERLLDYVPIGPRFSN---LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTS-SEEEEEECCHHHHTTCBTTTTBCCH---HHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc-CCcEEEEEChhhhhccCCCChhHHH---HHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 35667778777644 48999999999997654322 2222 33444444444 25567889999999988887 67
Q ss_pred hcccceeEecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH-HHH
Q 006458 519 ADRIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR-EIA 596 (644)
Q Consensus 519 ~~Rfd~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr-dI~ 596 (644)
.+||+..|+||+++. +++..++.. . ..++++.+..|+..+.||+.. ++.
T Consensus 186 ~~rf~~~i~~p~l~~r~~i~~i~~~---~--------------------------~~~~~~~~~~l~~~~~g~~~~g~ir 236 (272)
T 1d2n_A 186 LNAFSTTIHVPNIATGEQLLEALEL---L--------------------------GNFKDKERTTIAQQVKGKKVWIGIK 236 (272)
T ss_dssp TTTSSEEEECCCEEEHHHHHHHHHH---H--------------------------TCSCHHHHHHHHHHHTTSEEEECHH
T ss_pred hcccceEEcCCCccHHHHHHHHHHh---c--------------------------CCCCHHHHHHHHHHhcCCCccccHH
Confidence 889999999987765 443333332 1 026888999999999997211 244
Q ss_pred HHHHHHHHHH
Q 006458 597 KLMASVQAAV 606 (644)
Q Consensus 597 ~L~~~~~aa~ 606 (644)
.++..+..+.
T Consensus 237 ~l~~~l~~a~ 246 (272)
T 1d2n_A 237 KLLMLIEMSL 246 (272)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.79 E-value=1.3e-17 Score=176.56 Aligned_cols=217 Identities=19% Similarity=0.232 Sum_probs=155.9
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHH
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~ 445 (644)
.+.+|++++|++.+...+...+... ..++.++.+++|+|||||||||+++.||..++.++...++..+.. + .
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~---~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-~----~ 91 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAA---KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-Q----G 91 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHH---HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-H----H
T ss_pred CCccHHHccCcHHHHHHHHHHHHHH---HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-H----H
Confidence 3446899999988887776544332 223456678999999999999999999999999888777654422 1 1
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC---------------CCCCEEEEEEeCC
Q 006458 446 KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------------QSKDIVLALATNR 510 (644)
Q Consensus 446 ~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~---------------~~~~viiI~ttN~ 510 (644)
.+..++. ....++|+||||++.+.+ .....+...+..... ....+.+|.++|.
T Consensus 92 ~l~~~~~---~~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 92 DMAAILT---SLERGDVLFIDEIHRLNK---------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp HHHHHHH---HCCTTCEEEEETGGGCCH---------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred HHHHHHH---HccCCCEEEEcchhhcCH---------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 2222222 233468999999998743 222233222221110 1124677889999
Q ss_pred CCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC
Q 006458 511 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 590 (644)
Q Consensus 511 ~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~ 590 (644)
+..+++++++||...+.|++|+.+++..|++........ .++++.+..|+..+.|
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~------------------------~~~~~~~~~ia~~~~G- 214 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV------------------------EIEDAAAEMIAKRSRG- 214 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC------------------------CBCHHHHHHHHHTSTT-
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC------------------------CcCHHHHHHHHHhcCC-
Confidence 999999999999889999999999999999988764321 2788999999999988
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 591 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 591 SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
++|.+..++..+...+...+...||.+++..+++...
T Consensus 215 ~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 215 TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 6788888887665444433457899999999998753
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=3.1e-18 Score=181.41 Aligned_cols=213 Identities=17% Similarity=0.179 Sum_probs=146.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC------CCeEEEeCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG------LDYALMTGGDVA 437 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~------~~~~~i~~~~l~ 437 (644)
.+.+..|++++|++.++..+...+.. + .+.++||+||||||||++++++++.++ ..++.+++++..
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS-------A-NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------T-TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc-------C-CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 45667799999999988887655321 1 224599999999999999999999864 457778877653
Q ss_pred CCchhHHHHHHHHHHHH------------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEE
Q 006458 438 PLGPQAVTKIHQLFDWA------------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLA 505 (644)
Q Consensus 438 ~~g~~~~~~l~~~f~~a------------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI 505 (644)
.. .........+... .....+.||||||+|.+.. . ..+.|+..++....++.||
T Consensus 102 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------~---~~~~Ll~~le~~~~~~~~i 167 (353)
T 1sxj_D 102 GI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------D---AQSALRRTMETYSGVTRFC 167 (353)
T ss_dssp CH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------H---HHHHHHHHHHHTTTTEEEE
T ss_pred ch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------H---HHHHHHHHHHhcCCCceEE
Confidence 21 1111111111110 1123457999999999732 2 2344555555456678889
Q ss_pred EEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHH
Q 006458 506 LATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAA 585 (644)
Q Consensus 506 ~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~ 585 (644)
++||.+..+++++.+|| ..+.|++|+.++...++...+..... .++++.+..|+.
T Consensus 168 l~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~i~~~~l~~l~~ 222 (353)
T 1sxj_D 168 LICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENV------------------------KCDDGVLERILD 222 (353)
T ss_dssp EEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTC------------------------CCCHHHHHHHHH
T ss_pred EEeCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCC------------------------CCCHHHHHHHHH
Confidence 99999999999999999 58999999999999999888754211 278999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHHHhCCC-CCccCHHHHHHHHH
Q 006458 586 KTEGFSGREIAKLMASVQAAVYGSE-NCVLDPSLFREVVD 624 (644)
Q Consensus 586 ~t~G~SgrdI~~L~~~~~aa~~~~~-~~~lt~~~~~~al~ 624 (644)
.+.| +.|.+.+++..+.......+ ...||.+++..++.
T Consensus 223 ~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 223 ISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 9987 56666666543332221111 12799999888765
No 50
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.78 E-value=1.8e-18 Score=180.26 Aligned_cols=209 Identities=24% Similarity=0.239 Sum_probs=146.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~ 438 (644)
.+.+..|++++|++.....+...+.. +. ..++|||||||||||++++.+++.+ +.+++.+++++...
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------KN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------TC-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------CC-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 35566799999999988887654321 22 2359999999999999999999986 34578888876533
Q ss_pred CchhHHHHHHHHHHHH-HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHH
Q 006458 439 LGPQAVTKIHQLFDWA-KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSA 517 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a-~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~a 517 (644)
... ....+....... ....++.||||||+|.+.. ...+.|+..++..+.+++||++||.+..+.+.
T Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 82 IDV-VRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp TTT-SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred hHH-HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 211 011111111000 0113478999999999732 34566777777777899999999999999999
Q ss_pred HhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHH
Q 006458 518 VADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 597 (644)
Q Consensus 518 l~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~ 597 (644)
+.+|| .++.|++|+.+++..++..++..... .++++.+..|+..+.| +.+.+..
T Consensus 149 l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~i~~~~l~~l~~~~~G-~~r~~~~ 202 (319)
T 2chq_A 149 IQSRC-AVFRFKPVPKEAMKKRLLEICEKEGV------------------------KITEDGLEALIYISGG-DFRKAIN 202 (319)
T ss_dssp HHTTC-EEEECCCCCHHHHHHHHHHHHHTTCC------------------------CBCHHHHHHHHHTTTT-CHHHHHH
T ss_pred HHhhC-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CHHHHHH
Confidence 99999 59999999999999999888764321 2788999999988765 4555544
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 598 LMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 598 L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++ +.++.. ...+|.+++..++.
T Consensus 203 ~l---~~~~~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 203 AL---QGAAAI--GEVVDADTIYQITA 224 (319)
T ss_dssp HH---HHHHHS--SSCBCHHHHHHHTT
T ss_pred HH---HHHHHc--CCCCCHHHHHHHHC
Confidence 44 333332 24688877776644
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.77 E-value=1.8e-18 Score=182.53 Aligned_cols=235 Identities=15% Similarity=0.116 Sum_probs=151.8
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC----CchhHHH
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----LGPQAVT 445 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~----~g~~~~~ 445 (644)
+++++|++.++..+...+.. + .++||+||||||||++|+++++.++.+++.+++..... .|.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~-------~---~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~ 95 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT-------G---GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYN 95 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH-------T---CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEE
T ss_pred ccceeCcHHHHHHHHHHHHc-------C---CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeec
Confidence 78999999988877554332 1 36999999999999999999999999999988742211 0000000
Q ss_pred HHHHHHHHHHhcC--CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEEEEeCCCC---
Q 006458 446 KIHQLFDWAKKSK--RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRPG--- 512 (644)
Q Consensus 446 ~l~~~f~~a~~~~--~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~ttN~~~--- 512 (644)
.....|. .... .++||||||+|.+ +......|..++.... ..+.+++||+|+|..+
T Consensus 96 ~~~~~~~--~~~g~l~~~vl~iDEi~~~---------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~ 164 (331)
T 2r44_A 96 QHKGNFE--VKKGPVFSNFILADEVNRS---------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp TTTTEEE--EEECTTCSSEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred CCCCceE--eccCcccccEEEEEccccC---------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccC
Confidence 0000000 0001 1379999999986 2333444444444311 1345788888888543
Q ss_pred --CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc---
Q 006458 513 --DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--- 587 (644)
Q Consensus 513 --~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t--- 587 (644)
.+++++++||+..+.|++|+.+++..|++.++..... ...........+........--.++++.++.++..+
T Consensus 165 ~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~ 242 (331)
T 2r44_A 165 TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFN--YQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFAT 242 (331)
T ss_dssp CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCC--CCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcc--hhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3899999999889999999999999999988754210 000000000001000111111237888888877653
Q ss_pred ----------------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 588 ----------------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 588 ----------------~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.|.|.|.+..++..+.+.+.-.+...++.+++..++....
T Consensus 243 r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 243 RFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred hccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1568999999998887777666667899999999998765
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=4.5e-18 Score=177.90 Aligned_cols=204 Identities=23% Similarity=0.260 Sum_probs=142.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC-----CCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~-----~~~~~i~~~~l~~ 438 (644)
.+.+..|++++|++.....+..++.. + .+.++||+||||||||++++.+++.++ .+++.+++++...
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT-------G-SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 89 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH-------T-CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc-------C-CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc
Confidence 45667799999999999988766543 1 223599999999999999999999863 3467777654311
Q ss_pred CchhHHHHHHHHHHH-HHh----cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC
Q 006458 439 LGPQAVTKIHQLFDW-AKK----SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~-a~~----~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ 513 (644)
...+...+.. +.. ..++.||||||+|.+.. . .++.|+..++....+++||++||.+..
T Consensus 90 -----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------~---~~~~L~~~le~~~~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 90 -----INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------D---AQQALRRTMEMFSSNVRFILSCNYSSK 152 (327)
T ss_dssp -----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------H---HHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred -----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------H---HHHHHHHHHHhcCCCCeEEEEeCCccc
Confidence 1122222221 211 13478999999999732 2 344555555555678999999999999
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+.+.+|| ..+.|++|+.++...++..++..... .++++.+..|+..+.| +.+
T Consensus 153 l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~g-~~r 206 (327)
T 1iqp_A 153 IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGL------------------------ELTEEGLQAILYIAEG-DMR 206 (327)
T ss_dssp SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTC------------------------EECHHHHHHHHHHHTT-CHH
T ss_pred cCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHCCC-CHH
Confidence 999999999 58999999999999999888754221 1788999999998866 555
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
.+..++. .+.... ..+|.+++..++
T Consensus 207 ~~~~~l~---~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 207 RAINILQ---AAAALD--KKITDENVFMVA 231 (327)
T ss_dssp HHHHHHH---HHHTTC--SEECHHHHHHHT
T ss_pred HHHHHHH---HHHhcC--CCCCHHHHHHHH
Confidence 5555553 333222 356666665544
No 53
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.76 E-value=3.1e-17 Score=174.98 Aligned_cols=206 Identities=21% Similarity=0.214 Sum_probs=151.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 427 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---------------- 427 (644)
.+.+..|++++|++.....+...+.. +..+..+||+||||||||++++.+++.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 35566799999999999888775532 2233468999999999999999999988642
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC
Q 006458 428 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 496 (644)
Q Consensus 428 --------~~~i~~~~l~~~g~~~~~~l~~~f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~ 496 (644)
++.+++... . ....+..++..+.. ...+.||||||+|.+. ...++.|+..++
T Consensus 82 ~~~~~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~Ll~~le 144 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASR--T---KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLE 144 (373)
T ss_dssp HHTSCCSSCEEEETTCS--C---CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHHHHHHHHHHH
T ss_pred HhccCCCceEEeccccc--C---CHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHHHHHHHHHHh
Confidence 233332211 1 11234455555442 2346899999999972 234566777777
Q ss_pred CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 497 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 497 ~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
..+.++++|++||.+..+.+.+.+|+ ..+.|++|+.+++..++..++..... .++
T Consensus 145 ~~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~------------------------~~~ 199 (373)
T 1jr3_A 145 EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI------------------------AHE 199 (373)
T ss_dssp SCCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CBC
T ss_pred cCCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 77789999999999999999999999 89999999999999999998876432 268
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 623 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al 623 (644)
++.+..|+..+.| +.+.+..++..+ ..++. ..||.+++..++
T Consensus 200 ~~a~~~l~~~~~G-~~r~~~~~l~~~--~~~~~--~~i~~~~v~~~~ 241 (373)
T 1jr3_A 200 PRALQLLARAAEG-SLRDALSLTDQA--IASGD--GQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHSSS-CHHHHHHHHHHH--HHHTT--TCBCHHHHHHHT
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHH--HHhcC--CcccHHHHHHHh
Confidence 8899999999976 788888887643 33432 568888887664
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.76 E-value=7.2e-18 Score=181.29 Aligned_cols=238 Identities=16% Similarity=0.200 Sum_probs=146.2
Q ss_pred CccccChHHHHHHHHHHH-Hhhch---------------------hccCCCCccEEEecCCCCChHHHHHHHHHHcCCCe
Q 006458 371 GDVILHPSLQKRIRQLSG-ATANT---------------------KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY 428 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~-~~~~~---------------------~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~ 428 (644)
+.|+|++.+++.|...+. ..... .....+..++||+||||||||++|++||+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 568999999999976542 11110 01123556899999999999999999999999999
Q ss_pred EEEeCCCCCC---CchhHHHHHHHHHHHHH---hcCCCeEEEEeccchhhhccccCcCCH--HHHHHHHHHHHHhCCC--
Q 006458 429 ALMTGGDVAP---LGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSE--AQRSALNALLFRTGDQ-- 498 (644)
Q Consensus 429 ~~i~~~~l~~---~g~~~~~~l~~~f~~a~---~~~~~~VL~IDEid~l~~~r~~~~~~~--~~~~~l~~lL~~~~~~-- 498 (644)
+.+++..+.. .|......+..++.... ....++||||||+|.+...+.+..... ....+++.|+..++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 9999988753 22222333444443321 112478999999999876543221110 1112444455444321
Q ss_pred -------------------CCCEEEEEEeCC-----------------------------------------CCCCCHHH
Q 006458 499 -------------------SKDIVLALATNR-----------------------------------------PGDLDSAV 518 (644)
Q Consensus 499 -------------------~~~viiI~ttN~-----------------------------------------~~~ld~al 518 (644)
..++++|+++|. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 256788888772 12467999
Q ss_pred hcccceeEecCCCCHHHHHHHHHH----HHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC--CCcH
Q 006458 519 ADRIDEVLEFPLPGQEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSG 592 (644)
Q Consensus 519 ~~Rfd~~i~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~--G~Sg 592 (644)
.+||+.++.|++++.++...|+.. ++.++.... ... +.. ..++++.+..|+..+. +...
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~------------~~~--~~~-~~~~~~a~~~l~~~~~~~~~~~ 325 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLF------------KMD--EVD-LIFEEEAIKEIAQLALERKTGA 325 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHH------------HTT--TCE-EEECHHHHHHHHHHHHHTTCTG
T ss_pred hcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHH------------hhc--Cce-EEECHHHHHHHHHHhcccccCc
Confidence 999999999999999999999973 444332110 000 011 1378999999999854 3478
Q ss_pred HHHHHHHHHHHH-HHhC-----CCCCccCHHHHHHHH
Q 006458 593 REIAKLMASVQA-AVYG-----SENCVLDPSLFREVV 623 (644)
Q Consensus 593 rdI~~L~~~~~a-a~~~-----~~~~~lt~~~~~~al 623 (644)
|+|..++..+.. ..+. .....||.+++..+.
T Consensus 326 R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 326 RGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp GGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 999998843332 2221 122368998887654
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.76 E-value=9.6e-18 Score=167.13 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=139.0
Q ss_pred CCCCCCccccCh---HHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC---CCeEEEeCCCCCCC
Q 006458 366 NGNGFGDVILHP---SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPL 439 (644)
Q Consensus 366 ~~~~~~~vig~~---~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---~~~~~i~~~~l~~~ 439 (644)
+..+|+++++.+ .+...+..+.. . .+..++||+||||||||++++.+++.++ .+++++++.++...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~-----~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G-----DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI 94 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T-----CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 346799999733 44444433322 1 1346799999999999999999998874 77888888776543
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CC---CCC
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PG---DLD 515 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~~---~ld 515 (644)
..... .....+.||||||++.+.... .....+..++..... ...+.+|++||. +. .++
T Consensus 95 ~~~~~----------~~~~~~~vliiDe~~~~~~~~-------~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 95 STALL----------EGLEQFDLICIDDVDAVAGHP-------LWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp CGGGG----------TTGGGSSEEEEETGGGGTTCH-------HHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTTCCC
T ss_pred HHHHH----------HhccCCCEEEEeccccccCCH-------HHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHHHhh
Confidence 22111 111336899999999974321 112333333333211 123335555554 33 456
Q ss_pred HHHhcccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 516 SAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 516 ~al~~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+.+||. .+++|++|+.+++..++..++..... .++++.++.|+..+.| +.+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~g-~~r 211 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL------------------------QLPEDVGRFLLNRMAR-DLR 211 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC------------------------CCCHHHHHHHHHHTTT-CHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHccC-CHH
Confidence 99999996 89999999999999999998865321 2789999999999866 888
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
++..++..+...+... ...||.++++.++.
T Consensus 212 ~l~~~l~~~~~~a~~~-~~~It~~~v~~~l~ 241 (242)
T 3bos_A 212 TLFDVLDRLDKASMVH-QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHHHH-TCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh-CCCCcHHHHHHHhh
Confidence 8888886554444322 25799999998874
No 56
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.75 E-value=2.7e-17 Score=179.18 Aligned_cols=243 Identities=19% Similarity=0.279 Sum_probs=159.0
Q ss_pred CCccccChHHHHHHHHHHHH-hhchh-----ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCC---Cc
Q 006458 370 FGDVILHPSLQKRIRQLSGA-TANTK-----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LG 440 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~-~~~~~-----~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~---~g 440 (644)
-++|+|++.+++.|...+.. ..... ....+++++||+||||||||++|++||..++.+|+.++++.+.. +|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 35789999999999664432 11111 11235689999999999999999999999999999999877643 33
Q ss_pred hhHHHHHHHHHHHHH-----------------------------------------------------------------
Q 006458 441 PQAVTKIHQLFDWAK----------------------------------------------------------------- 455 (644)
Q Consensus 441 ~~~~~~l~~~f~~a~----------------------------------------------------------------- 455 (644)
.+....+..+|..+.
T Consensus 94 ~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i 173 (444)
T 1g41_A 94 KEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEI 173 (444)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEE
Confidence 233344444433220
Q ss_pred ------------------------------------------------------------------------hc-CCCeE
Q 006458 456 ------------------------------------------------------------------------KS-KRGLL 462 (644)
Q Consensus 456 ------------------------------------------------------------------------~~-~~~~V 462 (644)
.. .+.+|
T Consensus 174 ~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~i 253 (444)
T 1g41_A 174 EIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGI 253 (444)
T ss_dssp ----------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCE
T ss_pred EEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCe
Confidence 00 12458
Q ss_pred EEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC----------CCCCEEEEEEe----CCCCCCCHHHhcccceeEec
Q 006458 463 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVLEF 528 (644)
Q Consensus 463 L~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~----------~~~~viiI~tt----N~~~~ld~al~~Rfd~~i~~ 528 (644)
||+||+|++..+..+.........+...||..++. +..+++||+|. +.+.++.|+|++||+.+|.|
T Consensus 254 l~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l 333 (444)
T 1g41_A 254 VFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 333 (444)
T ss_dssp EEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEEC
T ss_pred eeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeC
Confidence 99999999986544322222333466677777653 46789999987 34455779999999999999
Q ss_pred CCCCHHHHHHHHH---H-HHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHH-------cCCCcHHHHHH
Q 006458 529 PLPGQEERFKLLK---L-YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK-------TEGFSGREIAK 597 (644)
Q Consensus 529 ~~p~~~er~~Il~---~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~-------t~G~SgrdI~~ 597 (644)
+.++.++...|+. . .+.++....+.. ...+ .++++.+..|++. |.....|-|..
T Consensus 334 ~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~------------~~~l---~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~ 398 (444)
T 1g41_A 334 TALSAADFERILTEPHASLTEQYKALMATE------------GVNI---AFTTDAVKKIAEAAFRVNEKTENIGARRLHT 398 (444)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTT------------TCEE---EECHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHhccc------------CceE---EECHHHHHHHHHHHHHhccCCccCCchHHHH
Confidence 9999999999993 2 333332211111 1111 2789999999884 45666788777
Q ss_pred HHHHH-HHHHhC-----CCCCccCHHHHHHHHHHHH
Q 006458 598 LMASV-QAAVYG-----SENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 598 L~~~~-~aa~~~-----~~~~~lt~~~~~~al~~~~ 627 (644)
++..+ ...++. .....||.+.+...+...+
T Consensus 399 ~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 399 VMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp HHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 66322 222221 2235789999988776544
No 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=4.8e-17 Score=169.73 Aligned_cols=205 Identities=19% Similarity=0.218 Sum_probs=148.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~ 438 (644)
.+.+..|++++|++.....+...+.. +.+ .++|||||||||||++++.+++.+ +.+++.+++++...
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 85 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC
Confidence 34566799999999999888766432 222 349999999999999999999986 34577777765422
Q ss_pred CchhHHHHHHHHHHHHHh------cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKK------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~------~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
...+..++..... ..++.||||||+|.+.. ...+.|+..++....+++||++||.+.
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 86 -----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp -----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred -----hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhccCCCceEEEEeCChh
Confidence 2334444443331 22378999999999732 234455555555667899999999999
Q ss_pred CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcH
Q 006458 513 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 592 (644)
Q Consensus 513 ~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sg 592 (644)
.+.+.+.+|| ..+.|++|+.+++..++..++..... .++++.+..|+..+.| +.
T Consensus 149 ~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~G-~~ 202 (323)
T 1sxj_B 149 KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDV------------------------KYTNDGLEAIIFTAEG-DM 202 (323)
T ss_dssp GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CBCHHHHHHHHHHHTT-CH
T ss_pred hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CH
Confidence 9999999999 59999999999999999988865321 1688899999999866 55
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 593 REIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 593 rdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
+.+..++..+. +.. ..+|.+++..++.
T Consensus 203 r~a~~~l~~~~---~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 203 RQAINNLQSTV---AGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHHH---HHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHHHH---hcC--CCcCHHHHHHHHC
Confidence 55555554332 111 4688888877765
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.74 E-value=5.5e-17 Score=171.69 Aligned_cols=248 Identities=17% Similarity=0.172 Sum_probs=146.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeE----EEeCCCCCC--
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYA----LMTGGDVAP-- 438 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~----~i~~~~l~~-- 438 (644)
.++.+|++++|++.++..+.... ... ...++||+||||||||++|+++++.++...+ .++|.....
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~---~~~-----~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 89 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA---VDP-----GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIP 89 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---HCG-----GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC
T ss_pred CCCCCchhccChHHHHHHHHHHh---hCC-----CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccccc
Confidence 34567999999998766542221 111 1235999999999999999999999863110 011111100
Q ss_pred ---------------------Cch---hHHHH--HHHHHHHHHh--------cCCCeEEEEeccchhhhccccCcCCHHH
Q 006458 439 ---------------------LGP---QAVTK--IHQLFDWAKK--------SKRGLLLFIDEADAFLCERNKTYMSEAQ 484 (644)
Q Consensus 439 ---------------------~g~---~~~~~--l~~~f~~a~~--------~~~~~VL~IDEid~l~~~r~~~~~~~~~ 484 (644)
.+. ...+. +...+..... ...++||||||+|.+. ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~---------~~~ 160 (350)
T 1g8p_A 90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE---------DHI 160 (350)
T ss_dssp TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC---------HHH
T ss_pred chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC---------HHH
Confidence 000 00000 1111111100 0126899999999973 233
Q ss_pred HHHHHHHHHH----hCC------CCCCEEEEEEeCCCC-CCCHHHhcccceeEecCCC-CHHHHHHHHHHHHHHHhhhhC
Q 006458 485 RSALNALLFR----TGD------QSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLP-GQEERFKLLKLYLDKYIAQAG 552 (644)
Q Consensus 485 ~~~l~~lL~~----~~~------~~~~viiI~ttN~~~-~ld~al~~Rfd~~i~~~~p-~~~er~~Il~~~l~~~~~~~~ 552 (644)
...|..++.. +.. .+.+++||+|||... .++++|++||+..++|++| +.+++..|++..+........
T Consensus 161 ~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~ 240 (350)
T 1g8p_A 161 VDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKA 240 (350)
T ss_dssp HHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchh
Confidence 3444444443 111 123789999999744 8999999999988999999 577787999875432110000
Q ss_pred -----CCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 006458 553 -----SRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF---SGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 624 (644)
Q Consensus 553 -----~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~---SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~ 624 (644)
..........+........-..++++.+..|+..+.+. +.|.+..++..+.+.+...+...|+.+++..++.
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 241 FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 00000000000000000111148999999998886542 5799999998777776655667899999999998
Q ss_pred HHHHh
Q 006458 625 YKVAE 629 (644)
Q Consensus 625 ~~~~~ 629 (644)
.....
T Consensus 321 ~~l~~ 325 (350)
T 1g8p_A 321 MALSH 325 (350)
T ss_dssp HHHGG
T ss_pred HHHhh
Confidence 86543
No 59
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=7.6e-18 Score=188.75 Aligned_cols=222 Identities=16% Similarity=0.202 Sum_probs=143.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchh-----c----cCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTK-----A----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGG 434 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~-----~----~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~ 434 (644)
.+.+.+|++|+|++..+..|..++....... . +..+++++||+||||||||++|+++|+.++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566689999999999999987765432211 1 112557899999999999999999999999999999998
Q ss_pred CCCCCch--hHHH------HHHHHHHHH----HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCE
Q 006458 435 DVAPLGP--QAVT------KIHQLFDWA----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDI 502 (644)
Q Consensus 435 ~l~~~g~--~~~~------~l~~~f~~a----~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~v 502 (644)
++..... .... .+..+|..+ .....++||||||+|.|..... ..++.|+..+......+
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~---------~~l~~L~~~l~~~~~~i 182 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR---------GGVGQLAQFCRKTSTPL 182 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST---------THHHHHHHHHHHCSSCE
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH---------HHHHHHHHHHHhcCCCE
Confidence 8654110 0000 011122222 1124578999999999854321 12333333333223334
Q ss_pred EEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHH
Q 006458 503 VLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILME 582 (644)
Q Consensus 503 iiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 582 (644)
++|+++.....+ +.+.+|+ ..+.|++|+.+++..+|...+..... .++++.+..
T Consensus 183 Ili~~~~~~~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~------------------------~i~~~~l~~ 236 (516)
T 1sxj_A 183 ILICNERNLPKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAIREKF------------------------KLDPNVIDR 236 (516)
T ss_dssp EEEESCTTSSTT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CCCTTHHHH
T ss_pred EEEEcCCCCccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHH
Confidence 444333333334 3455565 79999999999999999888765422 167788999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 583 AAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 583 LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
|+..+.| ++..++..++.++.. ...||.+++..++...
T Consensus 237 la~~s~G----diR~~i~~L~~~~~~--~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 237 LIQTTRG----DIRQVINLLSTISTT--TKTINHENINEISKAW 274 (516)
T ss_dssp HHHHTTT----CHHHHHHHHTHHHHH--SSCCCTTHHHHHHHHH
T ss_pred HHHHcCC----cHHHHHHHHHHHHhc--CCCCchHHHHHHHHhh
Confidence 9999865 455555444444433 3578888888877643
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=7.3e-17 Score=172.83 Aligned_cols=216 Identities=17% Similarity=0.202 Sum_probs=151.8
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----------CCCeEEEeCCCCC-
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----------GLDYALMTGGDVA- 437 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----------~~~~~~i~~~~l~- 437 (644)
.++++|.+.....+..++..... +..+++++|+||||||||++++.+++.+ +.+++.+++....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~----~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK----NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT----TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 48899999998888776544322 2344689999999999999999999987 8889999876543
Q ss_pred C-------------------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHH-HHHHHHHhCC
Q 006458 438 P-------------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSA-LNALLFRTGD 497 (644)
Q Consensus 438 ~-------------------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~-l~~lL~~~~~ 497 (644)
. .+......+..++..+.. . +.||||||+|.+..... ... +..++...
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~-- 162 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-I-RAIIYLDEVDTLVKRRG--------GDIVLYQLLRSD-- 162 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-S-CEEEEEETTHHHHHSTT--------SHHHHHHHHTSS--
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-C-CCEEEEECHHHhccCCC--------CceeHHHHhcCC--
Confidence 1 111112223334443332 2 33999999999854210 123 44444332
Q ss_pred CCCCEEEEEEeCCC---CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccC
Q 006458 498 QSKDIVLALATNRP---GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 574 (644)
Q Consensus 498 ~~~~viiI~ttN~~---~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (644)
.++.||+|||.+ ..+++.+.+||+..++|++|+.+++..|+..++..... -..
T Consensus 163 --~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~----------------------~~~ 218 (384)
T 2qby_B 163 --ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI----------------------KGT 218 (384)
T ss_dssp --SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC----------------------TTS
T ss_pred --cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc----------------------cCC
Confidence 789999999987 68899999999889999999999999999998863110 012
Q ss_pred CCHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 575 LTDDILMEAAAKTE---GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 575 ~~d~~l~~LA~~t~---G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
++++.+..++..+. | +.+.+..++..+...+. +...||.+++..+++....
T Consensus 219 ~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 219 YDDEILSYIAAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp CCSHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 77888999999886 4 45666666654333332 4478999999999887653
No 61
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=3.5e-17 Score=179.73 Aligned_cols=218 Identities=14% Similarity=0.187 Sum_probs=144.2
Q ss_pred cCCCCCCccc-cChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC
Q 006458 365 KNGNGFGDVI-LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 438 (644)
Q Consensus 365 ~~~~~~~~vi-g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~ 438 (644)
.+..+|+++| |+.... .+..+...... ++. +.+++||||||||||++++++++.+ +.+++++++..+..
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~---~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKH---PGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHS---TTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhC---CCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 4556899998 644432 22222222222 222 5679999999999999999999988 78888888766421
Q ss_pred CchhHHHHHH----HHHHHHHhcC-CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CC
Q 006458 439 LGPQAVTKIH----QLFDWAKKSK-RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PG 512 (644)
Q Consensus 439 ~g~~~~~~l~----~~f~~a~~~~-~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~~ 512 (644)
.....+. ..|. .... .++||||||++.+..+. ..+..+..++..+. ..+. .||+||+. +.
T Consensus 174 ---~~~~~~~~~~~~~~~--~~~~~~~~vL~IDEi~~l~~~~-------~~q~~l~~~l~~l~-~~~~-~iIitt~~~~~ 239 (440)
T 2z4s_A 174 ---DLVDSMKEGKLNEFR--EKYRKKVDILLIDDVQFLIGKT-------GVQTELFHTFNELH-DSGK-QIVICSDREPQ 239 (440)
T ss_dssp ---HHHHHHHTTCHHHHH--HHHTTTCSEEEEECGGGGSSCH-------HHHHHHHHHHHHHH-TTTC-EEEEEESSCGG
T ss_pred ---HHHHHHHcccHHHHH--HHhcCCCCEEEEeCcccccCCh-------HHHHHHHHHHHHHH-HCCC-eEEEEECCCHH
Confidence 1111111 1121 1223 47899999999985421 12223333333221 2233 44445554 44
Q ss_pred C---CCHHHhcccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006458 513 D---LDSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 587 (644)
Q Consensus 513 ~---ld~al~~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t 587 (644)
. +++.+++||. .++.|++|+.+++..|++.++..... .++++.+..|+..+
T Consensus 240 ~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~------------------------~i~~e~l~~la~~~ 295 (440)
T 2z4s_A 240 KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG------------------------ELPEEVLNFVAENV 295 (440)
T ss_dssp GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC------------------------CCCTTHHHHHHHHC
T ss_pred HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhc
Confidence 3 8899999996 78999999999999999998865321 26788899999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 006458 588 EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 627 (644)
Q Consensus 588 ~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~ 627 (644)
.| +.|++..++..+.+.+...+ ..||.+++.+++....
T Consensus 296 ~g-n~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 296 DD-NLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred CC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 76 89999999976655554322 4699999999987654
No 62
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=2.5e-17 Score=173.32 Aligned_cols=220 Identities=16% Similarity=0.174 Sum_probs=137.3
Q ss_pred cCCCCCCccc-cChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCC-
Q 006458 365 KNGNGFGDVI-LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL- 439 (644)
Q Consensus 365 ~~~~~~~~vi-g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~- 439 (644)
.+..+|++++ |+.... .+..+...... ++..+.++|||||||||||++++++++.+ +.+++++++.++...
T Consensus 5 ~~~~~f~~fv~g~~~~~-a~~~~~~~~~~---~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRL-AYEVVKEALEN---LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM 80 (324)
T ss_dssp CTTCCSSSCCCCTTTHH-HHHHHHHHHHT---TTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCCCcccCCCCCcHHH-HHHHHHHHHhC---cCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence 3456799998 543322 22222222221 22244679999999999999999999998 899999988665221
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---CCCH
Q 006458 440 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---DLDS 516 (644)
Q Consensus 440 g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~---~ld~ 516 (644)
...........|.... ..++||||||++.+..++ ..+..+..++.... ..+..+||.+++.+. .+++
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~-~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 81 VEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHH-HCCCeEEEEecCChHHHHHhhh
Confidence 0000000111122121 236899999999985321 12222333333221 123345555555554 6899
Q ss_pred HHhcccc--eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHH
Q 006458 517 AVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 594 (644)
Q Consensus 517 al~~Rfd--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgrd 594 (644)
.+.+||+ .++.|++ +.+++..|++.++..... .++++.+..|+..+ | +.|+
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~------------------------~l~~~~l~~l~~~~-g-~~r~ 203 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL------------------------ELRKEVIDYLLENT-K-NVRE 203 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC------------------------CCCHHHHHHHHHHC-S-SHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHhC-C-CHHH
Confidence 9999996 7899999 999999999999865321 27899999999999 5 7788
Q ss_pred HHHHHHHHHHHH---h-CCCCCcc-CHHHHHHHHHH
Q 006458 595 IAKLMASVQAAV---Y-GSENCVL-DPSLFREVVDY 625 (644)
Q Consensus 595 I~~L~~~~~aa~---~-~~~~~~l-t~~~~~~al~~ 625 (644)
+..++..+.+.. . ......| |.+++.+++..
T Consensus 204 l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 204 IEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 888876544330 0 0112356 77777777654
No 63
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.73 E-value=7.3e-18 Score=161.20 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=114.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCC
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDV 436 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l 436 (644)
+..|++++|.+.....+...+.. ....++||+||||||||++++.+++.+ +.+++.+++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred hccccccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 44699999999877777554322 234679999999999999999999986 677888877654
Q ss_pred C---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-
Q 006458 437 A---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG- 512 (644)
Q Consensus 437 ~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~- 512 (644)
. ...+.....+..++..+.....++||||||+|.+...+.... .......+..++ ...++.+|++||.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~l~~~~-----~~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 90 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL-----ARGELHCVGATTLDEY 163 (195)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHH-----HTTSCCEEEEECHHHH
T ss_pred hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hHHHHHHHHHhh-----ccCCeEEEEeCCHHHH
Confidence 3 233445556777777776666688999999999875432211 112233444444 235678899998875
Q ss_pred ----CCCHHHhcccceeEecCCCCHHHHHHHH
Q 006458 513 ----DLDSAVADRIDEVLEFPLPGQEERFKLL 540 (644)
Q Consensus 513 ----~ld~al~~Rfd~~i~~~~p~~~er~~Il 540 (644)
.+++++.+||+ .++|++|+.+++..||
T Consensus 164 ~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 78999999996 7999999999998875
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=4.4e-16 Score=166.75 Aligned_cols=222 Identities=17% Similarity=0.192 Sum_probs=155.9
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCCC----
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPL---- 439 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~~---- 439 (644)
+.+++++|.+.....+...+....... ...+++++|+||||||||++++.++..+ +.+++.++|......
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~--~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~ 91 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNP--GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAII 91 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHST--TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCC--CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHH
Confidence 345889999998888877654432211 1112379999999999999999999998 567888887664320
Q ss_pred --------------chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCC----CC
Q 006458 440 --------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS----KD 501 (644)
Q Consensus 440 --------------g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~----~~ 501 (644)
+......+..+.........+.||||||+|.+ + ...+..|+..+.... .+
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------~---~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------A---PDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---------C---HHHHHHHHHHTTCHHHHSSCC
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---------c---hHHHHHHHHHHHhCCCCCcCC
Confidence 11112222333333344455789999999987 1 234555555443322 58
Q ss_pred EEEEEEeCCC---CCCCHHHhcccce-eEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 502 IVLALATNRP---GDLDSAVADRIDE-VLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 502 viiI~ttN~~---~~ld~al~~Rfd~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
+.||++||.+ ..+++.+.+||.. .+.|++++.++...++...+...... ..+++
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~----------------------~~~~~ 217 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE----------------------GSYSE 217 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT----------------------TSSCH
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC----------------------CCCCH
Confidence 8999999987 6789999999965 89999999999999999988652210 13789
Q ss_pred HHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 578 DILMEAAAKT---------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 578 ~~l~~LA~~t---------~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
+.+..++..+ .| ..+.+..++..+...+...+...++.+++..++...
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 9999999999 44 567788887655444444455789999999887654
No 65
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=3.7e-16 Score=166.67 Aligned_cols=227 Identities=17% Similarity=0.171 Sum_probs=157.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc------CCCeEEEeCCCCCC--
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS------GLDYALMTGGDVAP-- 438 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l------~~~~~~i~~~~l~~-- 438 (644)
...+++++|.+.....+...+.... .+..+.+++|+||||||||++++.+++.+ +.+++.+++.....
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~----~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLY----REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGG----GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHH----cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 3446889999988888866543221 12344679999999999999999999988 88888888653211
Q ss_pred ----------------CchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC-CCCC
Q 006458 439 ----------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSKD 501 (644)
Q Consensus 439 ----------------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~-~~~~ 501 (644)
.+......+..++........++||||||++.+....+ ...+..++..++. ...+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~~~~~ 163 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEVNKSK 163 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhcCCCe
Confidence 11112222444555555445589999999999864321 1245555554432 4567
Q ss_pred EEEEEEeCCC---CCCCHHHhcccc-eeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 502 IVLALATNRP---GDLDSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 502 viiI~ttN~~---~~ld~al~~Rfd-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
+.+|++||.+ ..+++.+.+||. ..+.|++|+.+++..|+..++..... ...+++
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~----------------------~~~~~~ 221 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK----------------------PGVLPD 221 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC----------------------SSCSCH
T ss_pred EEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc----------------------CCCCCH
Confidence 8999999876 468889999986 48999999999999999998754210 013788
Q ss_pred HHHHHHHHHcC---CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 006458 578 DILMEAAAKTE---GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 578 ~~l~~LA~~t~---G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~ 628 (644)
+.+..++..+. | +++.+..++..+...+...+...||.+++..++.....
T Consensus 222 ~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 222 NVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 89999998886 5 56777777754444443344578999999999887653
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=2e-16 Score=185.18 Aligned_cols=226 Identities=19% Similarity=0.142 Sum_probs=157.9
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCC
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 435 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~ 435 (644)
.+..|+++||.+.....+..++.. ....++||+||||||||++++.|+..+ +..++.++++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~--------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~ 252 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR--------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc--------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH
Confidence 345799999999888887665421 234679999999999999999999987 55566666665
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-
Q 006458 436 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP- 511 (644)
Q Consensus 436 l~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~- 511 (644)
+. .+.+.....+..+|..+.... ++||||||+|.+.+.+..... .....+.|...+ ...++.+|++||.+
T Consensus 253 l~~~~~~~g~~e~~l~~~~~~~~~~~-~~iL~IDEi~~l~~~~~~~~~---~~~~~~~L~~~l--~~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 253 LLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGG---QVDAANLIKPLL--SSGKIRVIGSTTYQE 326 (758)
T ss_dssp --CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSCCSSSC---HHHHHHHHSSCS--SSCCCEEEEEECHHH
T ss_pred HhccccccchHHHHHHHHHHHHHhcC-CeEEEEechHHHhhcCCCCcc---hHHHHHHHHHHH--hCCCeEEEEEeCchH
Confidence 53 244566677888888887553 799999999999776543221 122333333333 34678889988864
Q ss_pred ----CCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc
Q 006458 512 ----GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 587 (644)
Q Consensus 512 ----~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t 587 (644)
..+|++|.+||+ .+.|+.|+.+++..||+.++..+..... ..++++.+..++..+
T Consensus 327 ~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~--------------------v~~~~~al~~~~~~s 385 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHD--------------------VRYTAKAVRAAVELA 385 (758)
T ss_dssp HHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHT--------------------CCCCHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHh
Confidence 357899999996 7999999999999999998877643211 127888888888776
Q ss_pred CC-----CcHHHHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHH
Q 006458 588 EG-----FSGREIAKLMASVQAAVYG----SENCVLDPSLFREVVDYK 626 (644)
Q Consensus 588 ~G-----~SgrdI~~L~~~~~aa~~~----~~~~~lt~~~~~~al~~~ 626 (644)
.| +.+..+..++..+.+.... .....++.+++..++...
T Consensus 386 ~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 386 VKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred hhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 54 4455666776443333221 234678999999888654
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=1.4e-16 Score=176.43 Aligned_cols=186 Identities=20% Similarity=0.284 Sum_probs=128.9
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 434 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~ 434 (644)
..+..|+.|||++.....+..++.. ....|+||+||||||||++|+.||..+ +.+++.++++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 3456799999999988888665432 233579999999999999999999997 7788888877
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006458 435 DVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-- 512 (644)
Q Consensus 435 ~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~-- 512 (644)
..+.+.....+..+|..+.... ++||||| . . ....+.|+..+ ..+++.||++||.+.
T Consensus 246 --~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD--~-----------~---~~a~~~L~~~L--~~g~v~vI~at~~~e~~ 304 (468)
T 3pxg_A 246 --TKYRGEFEDRLKKVMDEIRQAG-NIILFID--A-----------A---IDASNILKPSL--ARGELQCIGATTLDEYR 304 (468)
T ss_dssp ---------CTTHHHHHHHHHTCC-CCEEEEC--C----------------------CCCT--TSSSCEEEEECCTTTTH
T ss_pred --ccccchHHHHHHHHHHHHHhcC-CeEEEEe--C-----------c---hhHHHHHHHhh--cCCCEEEEecCCHHHHH
Confidence 3344444456778888887654 7899999 1 0 11334444444 355789999999887
Q ss_pred ---CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCC
Q 006458 513 ---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 589 (644)
Q Consensus 513 ---~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G 589 (644)
.+++++.+||. +|.|+.|+.+++..||+.++..+....+ ..++++.+..++..+.+
T Consensus 305 ~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~--------------------~~i~~~al~~l~~~s~~ 363 (468)
T 3pxg_A 305 KYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHR--------------------VSITDDAIEAAVKLSDR 363 (468)
T ss_dssp HHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSS--------------------CSCCHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHHHH
Confidence 68999999995 6999999999999999988765432111 13788888888887655
Q ss_pred Cc-----HHHHHHHHH
Q 006458 590 FS-----GREIAKLMA 600 (644)
Q Consensus 590 ~S-----grdI~~L~~ 600 (644)
|. ++....++.
T Consensus 364 ~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 364 YISDRFLPDKAIDLID 379 (468)
T ss_dssp SSCCSCTTHHHHHHHH
T ss_pred HhccCcCCcHHHHHHH
Confidence 43 345555553
No 68
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=6.5e-16 Score=163.94 Aligned_cols=190 Identities=21% Similarity=0.264 Sum_probs=129.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc-CC----------------
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-GL---------------- 426 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l-~~---------------- 426 (644)
.+.+.+|++++|++.+...+...+. ..+.. .++||+||||||||++++.+++.+ +.
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~------~~~~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~ 79 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD------QPRDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS 79 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT------CTTCC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh------hCCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc
Confidence 4566789999999998887755431 12222 349999999999999999999964 21
Q ss_pred ------------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh-------------cCCCeEEEEeccchhhhccccCcCC
Q 006458 427 ------------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK-------------SKRGLLLFIDEADAFLCERNKTYMS 481 (644)
Q Consensus 427 ------------~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~-------------~~~~~VL~IDEid~l~~~r~~~~~~ 481 (644)
+++.++..+.. ......+...+..+.. ..++.||||||++.| +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------~ 147 (354)
T 1sxj_E 80 NRKLELNVVSSPYHLEITPSDMG---NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------T 147 (354)
T ss_dssp ------CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---------C
T ss_pred cccceeeeecccceEEecHhhcC---CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---------C
Confidence 12222222211 1110123344433321 224679999999986 2
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchh
Q 006458 482 EAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHR 561 (644)
Q Consensus 482 ~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~ 561 (644)
... .+.++..+.....++.||++||.+..+.+.+.+|| ..+.|++|+.+++..+++..+......
T Consensus 148 ~~~---~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~----------- 212 (354)
T 1sxj_E 148 KDA---QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQ----------- 212 (354)
T ss_dssp HHH---HHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCE-----------
T ss_pred HHH---HHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCC-----------
Confidence 233 34444444444567899999999999999999999 999999999999999999988764321
Q ss_pred hhhhhhhhhhccCCC-HHHHHHHHHHcCCCcHHHHHHHHHH
Q 006458 562 LFKSEQQKIEIKGLT-DDILMEAAAKTEGFSGREIAKLMAS 601 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~-d~~l~~LA~~t~G~SgrdI~~L~~~ 601 (644)
++ ++.+..|+..+.| +.|++..++..
T Consensus 213 -------------~~~~~~l~~i~~~~~G-~~r~a~~~l~~ 239 (354)
T 1sxj_E 213 -------------LETKDILKRIAQASNG-NLRVSLLMLES 239 (354)
T ss_dssp -------------ECCSHHHHHHHHHHTT-CHHHHHHHHTH
T ss_pred -------------CCcHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 66 7899999999866 66666666653
No 69
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=9.7e-17 Score=170.07 Aligned_cols=207 Identities=20% Similarity=0.220 Sum_probs=142.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCC-----CeEEEeCCCCCC
Q 006458 364 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-----DYALMTGGDVAP 438 (644)
Q Consensus 364 ~~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~-----~~~~i~~~~l~~ 438 (644)
.+.+..|++++|++.+...|...+.. +. +.++|||||||||||++++++|+.+.. .+..++.++..
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-------g~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~- 88 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-------GK-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR- 88 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-------TC-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC-
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-------CC-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc-
Confidence 45667799999999988888665432 22 235999999999999999999998732 35666665432
Q ss_pred CchhHHHHHHHHHHHHHh-c----CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCC
Q 006458 439 LGPQAVTKIHQLFDWAKK-S----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 513 (644)
Q Consensus 439 ~g~~~~~~l~~~f~~a~~-~----~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ 513 (644)
+ ...++..+..... . ..+.|++|||+|.|.. ...+.|+..++..+.++.||++||.+..
T Consensus 89 -~---~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~~~~~~~il~~n~~~~ 152 (340)
T 1sxj_C 89 -G---IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------AAQNALRRVIERYTKNTRFCVLANYAHK 152 (340)
T ss_dssp -S---HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------HHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred -c---HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhcCCCCeEEEEEecCccc
Confidence 2 2223333322221 1 2368999999999732 2345555556666778899999999999
Q ss_pred CCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHH
Q 006458 514 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 593 (644)
Q Consensus 514 ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~Sgr 593 (644)
+.+++.+|| ..+.|++++.++...++...+..... .++++.+..++..+.|
T Consensus 153 i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~------------------------~i~~~~~~~i~~~s~G---- 203 (340)
T 1sxj_C 153 LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKL------------------------KLSPNAEKALIELSNG---- 203 (340)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTC------------------------CBCHHHHHHHHHHHTT----
T ss_pred cchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC----
Confidence 999999999 58999999999999888887753211 2788899999988755
Q ss_pred HHHHHHHHHHHHHhCCC---CCccCHHHHHHHHH
Q 006458 594 EIAKLMASVQAAVYGSE---NCVLDPSLFREVVD 624 (644)
Q Consensus 594 dI~~L~~~~~aa~~~~~---~~~lt~~~~~~al~ 624 (644)
++..++..++....... ...+|.+++..++.
T Consensus 204 ~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 204 DMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 44444433333332221 13688888876654
No 70
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.7e-16 Score=164.67 Aligned_cols=139 Identities=10% Similarity=0.138 Sum_probs=105.3
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCCCCC-----------------chhHHHHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDVAPL-----------------GPQAVTKIHQL 450 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l~~~-----------------g~~~~~~l~~~ 450 (644)
.++.++|||||||||||++++.+++.+ +..++++||..+... .+.....+..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 355789999999999999999999998 346788998765321 12234456667
Q ss_pred HHHH-HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC----CHHHhcccc-e
Q 006458 451 FDWA-KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDL----DSAVADRID-E 524 (644)
Q Consensus 451 f~~a-~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~l----d~al~~Rfd-~ 524 (644)
|... .....++||||||+|.|. .+.+|..++........+++||+++|..+.. ++.+.+||. .
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-----------~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~ 191 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-----------SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFT 191 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-----------CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEE
T ss_pred HHHhhhccCCceEEEEecHHHhh-----------cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCce
Confidence 7654 233457899999999985 1346777776555567789999999987643 445577996 6
Q ss_pred eEecCCCCHHHHHHHHHHHHHHH
Q 006458 525 VLEFPLPGQEERFKLLKLYLDKY 547 (644)
Q Consensus 525 ~i~~~~p~~~er~~Il~~~l~~~ 547 (644)
+|.|++|+.++...|++..+...
T Consensus 192 ~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 192 EIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999875
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=4.2e-16 Score=159.11 Aligned_cols=214 Identities=14% Similarity=0.094 Sum_probs=129.0
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC---CCeEEEeCCCCCCCchhHHH
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPLGPQAVT 445 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---~~~~~i~~~~l~~~g~~~~~ 445 (644)
+|+++||+......+...+..... ...++||+||||||||++|+++++.++ .+++.++|+.+.... ...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~--~~~ 75 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL--LDS 75 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH--HHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH--HHH
Confidence 599999998888777654443321 124699999999999999999999875 689999998763210 000
Q ss_pred HH----HHHHHHH-------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEEE
Q 006458 446 KI----HQLFDWA-------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLAL 506 (644)
Q Consensus 446 ~l----~~~f~~a-------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~ 506 (644)
.+ ...|..+ .....+++|||||++.+. ...+..|..++..-. ....++.||+
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~---------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~ 146 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP---------MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVC 146 (265)
T ss_dssp HHHCCC---------CCCCHHHHTTTSEEEEESGGGSC---------HHHHHHHHHHHHHCEECCCCC--CEECCCEEEE
T ss_pred HhcCCcccccccccccccchhhhcCCcEEEEechHhcC---------HHHHHHHHHHHHhCCeecCCCcccccCCeEEEE
Confidence 00 0001100 001236799999999973 334444545544321 1234688999
Q ss_pred EeCCC-------CCCCHHHhcccc-eeEecCCCCH--HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhc-cCC
Q 006458 507 ATNRP-------GDLDSAVADRID-EVLEFPLPGQ--EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI-KGL 575 (644)
Q Consensus 507 ttN~~-------~~ld~al~~Rfd-~~i~~~~p~~--~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 575 (644)
|||.+ ..+++.|.+||+ ..|.+|++.. +++..|++.++..+....+ ... ..+
T Consensus 147 atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~-----------------~~~~~~~ 209 (265)
T 2bjv_A 147 ATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIK-----------------LPLFPGF 209 (265)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTT-----------------CSSCCCB
T ss_pred ecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhC-----------------CCcccCc
Confidence 99984 358899999995 3456666554 5666677777765432211 111 247
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHH
Q 006458 576 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLF 619 (644)
Q Consensus 576 ~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~ 619 (644)
+++.+..|.......+.|+|.+++..+..... +..|+.+++
T Consensus 210 ~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 210 TERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 89999999887655577888888865443332 245555443
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.67 E-value=9.8e-16 Score=181.55 Aligned_cols=202 Identities=20% Similarity=0.249 Sum_probs=134.7
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCC
Q 006458 366 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 435 (644)
Q Consensus 366 ~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~ 435 (644)
.+..|+++||.+.....+..++.. ...+++||+||||||||++++.+|..+ +.+++.++++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~--------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC--------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 456799999999887777665422 233579999999999999999999987 78899999888
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 436 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 436 l~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
+. .+.++....+..+|..+.....++||||||+|.|.+.....+ .......+..++ ...++.+|++||.+.
T Consensus 237 l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-~~~~~~~L~~~l-----~~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 237 LLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AVDAGNMLKPAL-----ARGELRLIGATTLDE 310 (854)
T ss_dssp ---------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH-----HTTCCCEEEEECHHH
T ss_pred hhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-hHHHHHHHHHHH-----hCCCeEEEEecCchH
Confidence 74 244566677888998888765689999999999976543321 112223344444 235678899988764
Q ss_pred ----CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC
Q 006458 513 ----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 588 (644)
Q Consensus 513 ----~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~ 588 (644)
.++++|.+||+ .|.|+.|+.+++..||+.++..+....+ + .++++.+..++..+.
T Consensus 311 ~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~-----------------~---~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 311 YREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHG-----------------V---RISDSAIIAAATLSH 369 (854)
T ss_dssp HHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTT-----------------C---EECHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcC-----------------C---CCCHHHHHHHHHHHh
Confidence 47999999996 5999999999999999998877643211 1 267888888877653
Q ss_pred -----CCcHHHHHHHHHHH
Q 006458 589 -----GFSGREIAKLMASV 602 (644)
Q Consensus 589 -----G~SgrdI~~L~~~~ 602 (644)
+|.+.....++..+
T Consensus 370 r~i~~~~lp~kai~lldea 388 (854)
T 1qvr_A 370 RYITERRLPDKAIDLIDEA 388 (854)
T ss_dssp HHCCSSCTHHHHHHHHHHH
T ss_pred hhcccccChHHHHHHHHHH
Confidence 45566666666433
No 73
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.66 E-value=1.9e-16 Score=151.08 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=106.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCCCC
Q 006458 367 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDV 436 (644)
Q Consensus 367 ~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~~l 436 (644)
+..|++++|.+.....+...+.. ....++||+||||||||++++.+++.+ +.+++.+++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSL 89 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHh
Confidence 44699999999877777554321 234579999999999999999999987 667777766544
Q ss_pred C---CCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC-
Q 006458 437 A---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG- 512 (644)
Q Consensus 437 ~---~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~- 512 (644)
. ...+.....+..++..+.....++||||||+|.+.+.+............+..++ ...+++||+++|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~-----~~~~~~ii~~~~~~~~ 164 (187)
T 2p65_A 90 IAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPML-----ARGELRCIGATTVSEY 164 (187)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHH-----HTTCSCEEEEECHHHH
T ss_pred hcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHH-----hcCCeeEEEecCHHHH
Confidence 2 1333444556777777776656789999999998754431111112223333333 235688999998764
Q ss_pred ----CCCHHHhcccceeEecCCCC
Q 006458 513 ----DLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 513 ----~ld~al~~Rfd~~i~~~~p~ 532 (644)
.+++++.+||+ .++++.|+
T Consensus 165 ~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 165 RQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHhccHHHHHhcC-cccCCCCC
Confidence 68999999996 59999886
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.64 E-value=3e-15 Score=156.44 Aligned_cols=210 Identities=19% Similarity=0.190 Sum_probs=134.4
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC-------Cc
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP-------LG 440 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~-------~g 440 (644)
+++||.......+...+..... ...++||+||||||||++|++|++.+ +.+|+.++|+.+.. +|
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CCcEECCHHHHHHHHHHHHHhC------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 4588888888777665544421 22469999999999999999999976 57899999987642 00
Q ss_pred h------hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--------CCCCCEEEEE
Q 006458 441 P------QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLAL 506 (644)
Q Consensus 441 ~------~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--------~~~~~viiI~ 506 (644)
. .........|..+. +++||||||+.+. ...+..|..+++... ....++.||+
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~----~g~L~LDEi~~l~---------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEAD----GGTLFLDEIGDIS---------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHT----TSEEEEESCTTCC---------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred ccccccCchhhhhcCHHHhcC----CCEEEEeccccCC---------HHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 0 00001112333332 5799999999973 234444444444321 1235689999
Q ss_pred EeCCC-------CCCCHHHhcccc-eeEecCCCC--HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 507 ATNRP-------GDLDSAVADRID-EVLEFPLPG--QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 507 ttN~~-------~~ld~al~~Rfd-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
|||.. ..+++.|.+||. ..|.+|++. .++...|+..++..+....+. ....++
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~-----------------~~~~~s 205 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRK-----------------VVKGFT 205 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTC-----------------CCCCBC
T ss_pred ecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhcc-----------------CccCCC
Confidence 99975 468889999994 335555555 456667788777665432111 112488
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHH
Q 006458 577 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLF 619 (644)
Q Consensus 577 d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~ 619 (644)
++.+..|..++...+.|+|.+++..+.... .+..|+.+++
T Consensus 206 ~~a~~~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l 245 (304)
T 1ojl_A 206 PQAMDLLIHYDWPGNIRELENAIERAVVLL---TGEYISEREL 245 (304)
T ss_dssp HHHHHHHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhh
Confidence 999999998875557788888886443332 2345655554
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=4.9e-15 Score=173.42 Aligned_cols=188 Identities=21% Similarity=0.271 Sum_probs=130.8
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----------CCCeEEEeCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 434 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----------~~~~~~i~~~ 434 (644)
..+..|+.|||.+.....+..++.. ....|+||+||||||||++|++||+.+ +.+++.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~--------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~- 244 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM- 244 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC--------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-
Confidence 3456799999999998888665432 233579999999999999999999997 777887777
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--
Q 006458 435 DVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-- 512 (644)
Q Consensus 435 ~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~-- 512 (644)
...+.++....+..+|..+... .++||||| .. ....+.|+..+ ..+++.+|++||...
T Consensus 245 -g~~~~G~~e~~l~~~~~~~~~~-~~~iLfiD--~~--------------~~~~~~L~~~l--~~~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 245 -GTKYRGEFEDRLKKVMDEIRQA-GNIILFID--AA--------------IDASNILKPSL--ARGELQCIGATTLDEYR 304 (758)
T ss_dssp ---------CTTHHHHHHHHHTC-CCCEEEEC--C----------------------CCCT--TSSSCEEEEECCTTTTH
T ss_pred -cccccchHHHHHHHHHHHHHhc-CCEEEEEc--Cc--------------hhHHHHHHHHH--hcCCEEEEeCCChHHHH
Confidence 2223445556788889888764 47899999 10 11334444444 356799999999988
Q ss_pred ---CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcC-
Q 006458 513 ---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE- 588 (644)
Q Consensus 513 ---~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~- 588 (644)
.+++++.+|| ..|.|+.|+.+++..||+.++..+....+ ..++++.+..++..+.
T Consensus 305 ~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~--------------------~~i~~~al~~~~~~s~~ 363 (758)
T 3pxi_A 305 KYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHR--------------------VSITDDAIEAAVKLSDR 363 (758)
T ss_dssp HHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSS--------------------CSCCHHHHHHHHHHHHH
T ss_pred HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHhhc
Confidence 7999999999 67999999999999999977665432111 1378888888887653
Q ss_pred ----CCcHHHHHHHHHHH
Q 006458 589 ----GFSGREIAKLMASV 602 (644)
Q Consensus 589 ----G~SgrdI~~L~~~~ 602 (644)
++.+.....++..+
T Consensus 364 ~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 364 YISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp SSCCSCTTHHHHHHHHHH
T ss_pred ccccCcCCcHHHHHHHHH
Confidence 45566666666433
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=1.6e-15 Score=168.30 Aligned_cols=229 Identities=16% Similarity=0.130 Sum_probs=135.4
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC--CCeEEEeCCCCCC---CchhHHH
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAP---LGPQAVT 445 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~--~~~~~i~~~~l~~---~g~~~~~ 445 (644)
..|+|++.++..+...+... .++||+||||||||++|++||..++ .+|..+++....+ +|.....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~ 91 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 91 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC--
T ss_pred hhhHHHHHHHHHHHHHHhcC----------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHH
Confidence 56889999887775443221 3699999999999999999999985 3555555532110 0100000
Q ss_pred HH--HHHHHHHHhcC--CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh-----C---CCCCCEEEEEEeCCCC-
Q 006458 446 KI--HQLFDWAKKSK--RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-----G---DQSKDIVLALATNRPG- 512 (644)
Q Consensus 446 ~l--~~~f~~a~~~~--~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~-----~---~~~~~viiI~ttN~~~- 512 (644)
.. ...|..+.... .++|||||||+.+ +......|..++..- + ..+.. ++|+|||.+.
T Consensus 92 ~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~---------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN~lpe 161 (500)
T 3nbx_X 92 ALKDEGRYERLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASNELPE 161 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGC---------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEESSCCC
T ss_pred HHhhchhHHhhhccCCCcceeeeHHhHhhh---------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhccccCCC
Confidence 00 11111111110 2569999999875 333444444444321 0 11223 4677888643
Q ss_pred --CCCHHHhcccceeEecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHc--
Q 006458 513 --DLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-- 587 (644)
Q Consensus 513 --~ld~al~~Rfd~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t-- 587 (644)
.+.+++++||...+.+++|+. +++..|+.......... ...........+......+.-..++++.++.++...
T Consensus 162 ~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~-~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~ 240 (500)
T 3nbx_X 162 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP-VPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQ 240 (500)
T ss_dssp TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCC-SCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCC-CCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHH
Confidence 355799999999999999987 77888887654221100 000000001111111111222237888888887665
Q ss_pred -------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 006458 588 -------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 620 (644)
Q Consensus 588 -------~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~ 620 (644)
.|.|+|.+..++..+.+.+...+...++++|+.
T Consensus 241 lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 241 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred hhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 488999999999888887777777788888887
No 77
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.60 E-value=1.1e-14 Score=154.20 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=114.8
Q ss_pred CCCCccEEEecCCCCChHHHHHHHHHHcCCC------------------------eEEEeCCCCCCCchhHHHHHHHHHH
Q 006458 397 NAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------------YALMTGGDVAPLGPQAVTKIHQLFD 452 (644)
Q Consensus 397 ~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~------------------------~~~i~~~~l~~~g~~~~~~l~~~f~ 452 (644)
+..+..+|||||||||||++|+.+|+.+... ++.+++..-. ..-....++.+++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK--NTLGVDAVREVTE 98 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC--SSBCHHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC--CCCCHHHHHHHHH
Confidence 3344569999999999999999999987532 3333332100 0112345566666
Q ss_pred HHHhc---CCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEecC
Q 006458 453 WAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 529 (644)
Q Consensus 453 ~a~~~---~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~ 529 (644)
.+... .++.|+||||+|.|. ....|.|+..+++.+.+++||++||.++.+.+.+++|| ..+.|+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~ 165 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC-RLHYLA 165 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS-EEEECC
T ss_pred HHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc-eeeeCC
Confidence 65432 246899999999972 23578888889888889999999999999999999999 789999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHH
Q 006458 530 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKL 598 (644)
Q Consensus 530 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L 598 (644)
+|+.++...++...+ .++++.+..++..+.| +.+.+..+
T Consensus 166 ~~~~~~~~~~L~~~~-----------------------------~~~~~~~~~l~~~s~G-~~r~a~~~ 204 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV-----------------------------TMSQDALLAALRLSAG-SPGAALAL 204 (334)
T ss_dssp CCCHHHHHHHHHHHC-----------------------------CCCHHHHHHHHHHTTT-CHHHHHHT
T ss_pred CCCHHHHHHHHHHhc-----------------------------CCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 999999988887653 1567777777777765 44444443
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=1.5e-15 Score=172.67 Aligned_cols=245 Identities=14% Similarity=0.072 Sum_probs=147.6
Q ss_pred CCccccChHHHHHHHHHHHHhhc--hh-ccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEe----CCCCCC-Cch
Q 006458 370 FGDVILHPSLQKRIRQLSGATAN--TK-AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT----GGDVAP-LGP 441 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~--~~-~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~----~~~l~~-~g~ 441 (644)
...|+|++.++..+...+..... .. .......++||+||||||||++|+++++.++..++... +..+.. ...
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 45678999887776321111000 00 00012237999999999999999999999876655422 122211 000
Q ss_pred hHHH----HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC----------CCCCCEEEEEE
Q 006458 442 QAVT----KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----------DQSKDIVLALA 507 (644)
Q Consensus 442 ~~~~----~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~----------~~~~~viiI~t 507 (644)
.... .....+..+ .++||||||+|++. ...+..|..++..-. ..+.++.||+|
T Consensus 374 ~~~~g~~~~~~G~l~~A----~~gil~IDEid~l~---------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaa 440 (595)
T 3f9v_A 374 EKGTGEYYLEAGALVLA----DGGIAVIDEIDKMR---------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAA 440 (595)
T ss_dssp GGGTSSCSEEECHHHHH----SSSEECCTTTTCCC---------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEE
T ss_pred ccccccccccCCeeEec----CCCcEEeehhhhCC---------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEE
Confidence 0000 000112222 26799999999972 234444444443211 12357889999
Q ss_pred eCCCC-------------CCCHHHhcccceeE-ecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhh---hhh
Q 006458 508 TNRPG-------------DLDSAVADRIDEVL-EFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQ---QKI 570 (644)
Q Consensus 508 tN~~~-------------~ld~al~~Rfd~~i-~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~ 570 (644)
||.+. .+++++++|||.++ ..+.|+.+ ...|++..+...... ......-...++.+- ...
T Consensus 441 tNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~--~~~~~l~~~~l~~~i~~ar~~ 517 (595)
T 3f9v_A 441 GNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK--STKNIIDIDTLRKYIAYARKY 517 (595)
T ss_dssp ECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC--SSSSTTCCTTTHHHHHHHHHH
T ss_pred cCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc--ccccCCCHHHHHHHHHHHHHh
Confidence 99876 89999999998554 55666666 777877777543210 000011111222211 111
Q ss_pred hccCCCHHHHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhH
Q 006458 571 EIKGLTDDILMEAAAK--------------TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 630 (644)
Q Consensus 571 ~~~~~~d~~l~~LA~~--------------t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~ 630 (644)
-...++++..+.|... +.+.|.|.+..+++.+.+.+.......++.+|+.+|+.......
T Consensus 518 ~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl 591 (595)
T 3f9v_A 518 VTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFL 591 (595)
T ss_dssp HCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHH
Confidence 1124677777777766 35789999999999888888877788999999999998776544
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=2.7e-13 Score=146.23 Aligned_cols=227 Identities=17% Similarity=0.155 Sum_probs=145.8
Q ss_pred CCCccccChHHHHHHHHHH-HHhhchhccCCCCccEEE--ecCCCCChHHHHHHHHHHc---------CCCeEEEeCCCC
Q 006458 369 GFGDVILHPSLQKRIRQLS-GATANTKAHNAPFRNMLF--YGPPGTGKTMAARELARKS---------GLDYALMTGGDV 436 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~-~~~~~~~~~~~p~~~iLL--~GppGtGKT~lAkaLA~~l---------~~~~~~i~~~~l 436 (644)
..+.++|.+.....|...+ ...... .+..+.+++| +||||||||++++.+++.+ +..++++++...
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~--~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG--AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS--SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC--CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 3578999988888886655 433211 0023357999 9999999999999999876 456777876432
Q ss_pred CCC------------------chhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC--
Q 006458 437 APL------------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-- 496 (644)
Q Consensus 437 ~~~------------------g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-- 496 (644)
... +......+..+.........+.||||||++.+...... + ...+..++..+.
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~---~---~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI---A---AEDLYTLLRVHEEI 171 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS---C---HHHHHHHHTHHHHS
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc---c---hHHHHHHHHHHHhc
Confidence 110 11111112233333333345789999999998432110 1 123333333332
Q ss_pred -CCC--CCEEEEEEeCCCC---CCC---HHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhh
Q 006458 497 -DQS--KDIVLALATNRPG---DLD---SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQ 567 (644)
Q Consensus 497 -~~~--~~viiI~ttN~~~---~ld---~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 567 (644)
... .++.||++||.++ .++ +.+.+++...+.|++++.++...|+..++......
T Consensus 172 ~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~----------------- 234 (412)
T 1w5s_A 172 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD----------------- 234 (412)
T ss_dssp CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-----------------
T ss_pred ccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-----------------
Confidence 113 6788998887654 334 66777887779999999999999998887643210
Q ss_pred hhhhccCCCHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 568 QKIEIKGLTDDILMEAAAKTE------GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 568 ~~~~~~~~~d~~l~~LA~~t~------G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
..++++.+..++..+. | .++.+..++..+...+.......++.+++..++...
T Consensus 235 -----~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 235 -----TVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp -----TSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred -----CCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 1278889999999997 6 677788887654444444445678888888777543
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.52 E-value=5e-14 Score=130.75 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=90.1
Q ss_pred ccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHHHHH
Q 006458 372 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIH 448 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~~l~ 448 (644)
++||.......+...+..... ...++||+||||||||++|++|++.. +.+|+ ++|+.+... ....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhh
Confidence 578888877777665443321 12459999999999999999999987 67899 999877543 2233
Q ss_pred HHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-------CCCCHHHhcc
Q 006458 449 QLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-------GDLDSAVADR 521 (644)
Q Consensus 449 ~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~-------~~ld~al~~R 521 (644)
..+..+. +++|||||+|.+. ...+..+..++ .....++.||+|||.+ ..+.+.+..|
T Consensus 70 ~~~~~a~----~g~l~ldei~~l~---------~~~q~~Ll~~l---~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 70 DFIALAQ----GGTLVLSHPEHLT---------REQQYHLVQLQ---SQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp HHHHHHT----TSCEEEECGGGSC---------HHHHHHHHHHH---HSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred cHHHHcC----CcEEEEcChHHCC---------HHHHHHHHHHH---hhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 4555442 5799999999972 23333333333 4455678899999974 3678888888
Q ss_pred cc-eeEecCCC
Q 006458 522 ID-EVLEFPLP 531 (644)
Q Consensus 522 fd-~~i~~~~p 531 (644)
+. ..|++|++
T Consensus 134 l~~~~i~lPpL 144 (145)
T 3n70_A 134 FAMTQIACLPL 144 (145)
T ss_dssp HHHHEEECCCC
T ss_pred hcCCEEeCCCC
Confidence 74 34566553
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.9e-13 Score=142.81 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=107.5
Q ss_pred cChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc------CCCeEEEeCCCCCCCchhHHHHHH
Q 006458 375 LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS------GLDYALMTGGDVAPLGPQAVTKIH 448 (644)
Q Consensus 375 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l------~~~~~~i~~~~l~~~g~~~~~~l~ 448 (644)
|++++.+.|...+.. +. ..++|||||||||||++++++|+.+ ..+++.++..+- .. ....++
T Consensus 1 g~~~~~~~L~~~i~~-------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~---~id~ir 68 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NI---GIDDIR 68 (305)
T ss_dssp ---CHHHHHHHHHHT-------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CB---CHHHHH
T ss_pred ChHHHHHHHHHHHHC-------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CC---CHHHHH
Confidence 455556666554322 22 3579999999999999999999874 346777765421 12 244566
Q ss_pred HHHHHHHhcC---CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhccccee
Q 006458 449 QLFDWAKKSK---RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEV 525 (644)
Q Consensus 449 ~~f~~a~~~~---~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~ 525 (644)
.+++.+.... ++.|+||||+|.|. ....|.|+..+++.+.+++||++||.+..+.+++++| +
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred HHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---e
Confidence 6777765432 35799999999972 3357889999998999999999999999999999999 9
Q ss_pred EecCCCCHHHHHHHHHHHH
Q 006458 526 LEFPLPGQEERFKLLKLYL 544 (644)
Q Consensus 526 i~~~~p~~~er~~Il~~~l 544 (644)
+.|++|+.++...++...+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998876
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.45 E-value=3.9e-13 Score=153.33 Aligned_cols=223 Identities=19% Similarity=0.172 Sum_probs=141.1
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC---eEEEeCCCCCCCc-
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAPLG- 440 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~---~~~i~~~~l~~~g- 440 (644)
.++..|++++|+..+.+.+...+.. + .+++|+||||||||+++++|+..+... .+.+.+.......
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~-------g---~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQ-------K---RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP 104 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHT-------T---CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC
T ss_pred ccccccceEECchhhHhhccccccC-------C---CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC
Confidence 4556699999999988877654432 1 369999999999999999999988533 2222222211000
Q ss_pred -------hhH-------------------------------------------------HHHHHHHHHHH----------
Q 006458 441 -------PQA-------------------------------------------------VTKIHQLFDWA---------- 454 (644)
Q Consensus 441 -------~~~-------------------------------------------------~~~l~~~f~~a---------- 454 (644)
+.. ......+|...
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 000 00001111000
Q ss_pred ------------HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC------------------CCCCCEEE
Q 006458 455 ------------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------------------DQSKDIVL 504 (644)
Q Consensus 455 ------------~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~------------------~~~~~vii 504 (644)
.....+++|||||++.| +...+..|..+|..-. ..+.++.|
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l---------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~v 255 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATL---------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVL 255 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGS---------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEE
T ss_pred cccccccccCceeeecCCCEEEEechhhC---------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEE
Confidence 00123579999999997 3344555555554311 11347889
Q ss_pred EEEeCCC--CCCCHHHhcccc---eeEecCCC---CHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCC
Q 006458 505 ALATNRP--GDLDSAVADRID---EVLEFPLP---GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 576 (644)
Q Consensus 505 I~ttN~~--~~ld~al~~Rfd---~~i~~~~p---~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (644)
|+|||.. ..++++|++||+ ..+.|+.. +.+....+++.+....... -....++
T Consensus 256 I~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~~~ls 316 (604)
T 3k1j_A 256 VAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRD-------------------GKIPHFT 316 (604)
T ss_dssp EEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHH-------------------CSSCCBB
T ss_pred EEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhc-------------------cCcccCC
Confidence 9999976 679999999996 45666543 3455666665544433211 0112478
Q ss_pred HHHHHHHHHHc---CCC------cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 006458 577 DDILMEAAAKT---EGF------SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 625 (644)
Q Consensus 577 d~~l~~LA~~t---~G~------SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~ 625 (644)
++.+..|...+ .|- +.|+|.+++..+.+.+.......||.+++..++..
T Consensus 317 ~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 317 KEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 99999988765 452 68999999987766665566679999999999965
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.44 E-value=5.9e-14 Score=129.97 Aligned_cols=132 Identities=12% Similarity=0.190 Sum_probs=87.3
Q ss_pred ccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHH
Q 006458 372 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLF 451 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f 451 (644)
+++|.+.....+...+..... ...++||+||||||||++|++++..++ +++.++|+.+.. .....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~------~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI------DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH------HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh------HhhhhHH
Confidence 578888888887665544321 124599999999999999999999888 999998876532 1134444
Q ss_pred HHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC-CC----CCHHHhcccc-ee
Q 006458 452 DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-GD----LDSAVADRID-EV 525 (644)
Q Consensus 452 ~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~-~~----ld~al~~Rfd-~~ 525 (644)
..+. +++|||||+|.+ +...+..+..++... ...++.+|+|||.+ .. +++.+..||. ..
T Consensus 72 ~~a~----~~~l~lDei~~l---------~~~~q~~Ll~~l~~~--~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~ 136 (143)
T 3co5_A 72 QKAE----GGVLYVGDIAQY---------SRNIQTGITFIIGKA--ERCRVRVIASCSYAAGSDGISCEEKLAGLFSESV 136 (143)
T ss_dssp HHTT----TSEEEEEECTTC---------CHHHHHHHHHHHHHH--TTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEE
T ss_pred HhCC----CCeEEEeChHHC---------CHHHHHHHHHHHHhC--CCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcE
Confidence 4432 679999999997 334444454554443 25668899988864 22 5566777863 35
Q ss_pred EecCCC
Q 006458 526 LEFPLP 531 (644)
Q Consensus 526 i~~~~p 531 (644)
|.+|++
T Consensus 137 i~lPpL 142 (143)
T 3co5_A 137 VRIPPL 142 (143)
T ss_dssp EEECCC
T ss_pred EeCCCC
Confidence 566653
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.32 E-value=1.9e-11 Score=131.94 Aligned_cols=214 Identities=19% Similarity=0.233 Sum_probs=139.1
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC---CCeEEEeCCCCCCC--chhHH
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPL--GPQAV 444 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~---~~~~~i~~~~l~~~--g~~~~ 444 (644)
+..++|.......+...+...... . .++||+|++|||||++|+.+....+ .+|+.++|+.+... ..+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~---~---~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elf 209 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA---E---CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELF 209 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC---C---SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC---C---CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhc
Confidence 567888877766665555443322 2 3489999999999999999988864 78999999886421 00000
Q ss_pred -----------HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHh-----CC---CCCCEEEE
Q 006458 445 -----------TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-----GD---QSKDIVLA 505 (644)
Q Consensus 445 -----------~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~-----~~---~~~~viiI 505 (644)
......|..+ .+++||||||+.| +...+..|..+|+.- +. ...++.||
T Consensus 210 g~~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 276 (387)
T 1ny5_A 210 GYEKGAFTGAVSSKEGFFELA----DGGTLFLDEIGEL---------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL 276 (387)
T ss_dssp CBCTTSSTTCCSCBCCHHHHT----TTSEEEEESGGGC---------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred CCCCCCCCCcccccCCceeeC----CCcEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 0011233333 2679999999997 446666676666642 11 23478899
Q ss_pred EEeCC-------CCCCCHHHhcccc-eeEecCCCC--HHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCC
Q 006458 506 LATNR-------PGDLDSAVADRID-EVLEFPLPG--QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 575 (644)
Q Consensus 506 ~ttN~-------~~~ld~al~~Rfd-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (644)
+|||. ...+.+.|..|+. ..|++|++. .+++..|+..++.++....+. ....+
T Consensus 277 ~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~-----------------~~~~~ 339 (387)
T 1ny5_A 277 AATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAK-----------------EVEGF 339 (387)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTC-----------------CCCEE
T ss_pred EeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCC-----------------CCCCC
Confidence 99996 3578888888883 334555543 266667777777765432111 11237
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 006458 576 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 622 (644)
Q Consensus 576 ~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~a 622 (644)
+++.+..|..+..-.+.|+|.+++..+-.. ..+..|+.+++-..
T Consensus 340 ~~~a~~~l~~~~wpGNvreL~~~i~~~~~~---~~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 340 TKSAQELLLSYPWYGNVRELKNVIERAVLF---SEGKFIDRGELSCL 383 (387)
T ss_dssp CHHHHHHHHHSCCTTHHHHHHHHHHHHHHH---CCSSEECHHHHHHH
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHHHHHh---CCCCcCcHHHCcHh
Confidence 899999999887655677888887643332 23468888887543
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.25 E-value=2.6e-10 Score=146.57 Aligned_cols=139 Identities=20% Similarity=0.296 Sum_probs=96.7
Q ss_pred ccEEEecCCCCChHHHHHHH-HHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHh--------------cCCCeEEEE
Q 006458 401 RNMLFYGPPGTGKTMAAREL-ARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKK--------------SKRGLLLFI 465 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaL-A~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~--------------~~~~~VL~I 465 (644)
+++||+||||||||++|+.+ +...+.+++.++++..... ..+...+..... ....+||||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~-----~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT-----EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH-----HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH-----HHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 45999999999999999554 4444677888887665421 233333333210 122479999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHHhC--C-C------CCCEEEEEEeCCCC-----CCCHHHhcccceeEecCCC
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFRTG--D-Q------SKDIVLALATNRPG-----DLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~-~------~~~viiI~ttN~~~-----~ld~al~~Rfd~~i~~~~p 531 (644)
||++.-...+.+ .......+..++..-+ + . ..++.+|+|||.+. .++++|+||| .+++++.|
T Consensus 1343 DEinmp~~d~yg---~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P 1418 (2695)
T 4akg_A 1343 DEINLPKLDKYG---SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYP 1418 (2695)
T ss_dssp ETTTCSCCCSSS---CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCC
T ss_pred cccccccccccC---chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCC
Confidence 999863222211 2245566777765322 1 1 13689999999984 8999999999 99999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 006458 532 GQEERFKLLKLYLDKYI 548 (644)
Q Consensus 532 ~~~er~~Il~~~l~~~~ 548 (644)
+.+++..|+..++....
T Consensus 1419 ~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1419 SGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp TTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987653
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.22 E-value=4.2e-10 Score=120.48 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=129.0
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC--eEEEeCCCCCCCchhHH--H-
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAPLGPQAV--T- 445 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~--~~~i~~~~l~~~g~~~~--~- 445 (644)
..++|.......+...+....... .++|++|++||||+++|+.+....+.. |+.++|+.+...-.+.. +
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE
T ss_pred ccccccchHHHHHHhhhhhhhccc------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc
Confidence 467888777777766554443222 239999999999999999999887543 99999998754211100 0
Q ss_pred ----------HHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-----C---CCCCEEEEEE
Q 006458 446 ----------KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLALA 507 (644)
Q Consensus 446 ----------~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-----~---~~~~viiI~t 507 (644)
.-...|..+ .++.||||||+.| +...+..|..+++.-. . ...++.||++
T Consensus 203 ~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 203 EKGAFTGALTRKKGKLELA----DQGTLFLDEVGEL---------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp CSCSSSSCCCCEECHHHHT----TTSEEEEETGGGS---------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred cccccCCcccccCChHhhc----CCCeEEecChhhC---------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 001123333 2578999999997 4466666767766421 1 1236889999
Q ss_pred eCCC-------CCCCHHHhcccce-eEecCCCCH--HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 508 TNRP-------GDLDSAVADRIDE-VLEFPLPGQ--EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 508 tN~~-------~~ld~al~~Rfd~-~i~~~~p~~--~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
||.. ..|.+.|..|+.. .|++|++.. +++..++..++.++....+. ....+++
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~-----------------~~~~~~~ 332 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKK-----------------NCFELSE 332 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTC-----------------CCCCBCH
T ss_pred cCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCC-----------------CCCCcCH
Confidence 9863 4678888888843 356676655 67778888888776533211 1224899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHH
Q 006458 578 DILMEAAAKTEGFSGREIAKLMA 600 (644)
Q Consensus 578 ~~l~~LA~~t~G~SgrdI~~L~~ 600 (644)
+.+..|..+...-+.|++.+++.
T Consensus 333 ~a~~~L~~~~wpGNvreL~n~i~ 355 (368)
T 3dzd_A 333 ETKEYLMKQEWKGNVRELKNLIE 355 (368)
T ss_dssp HHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999998865446677777665
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.20 E-value=1.9e-11 Score=117.06 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=77.2
Q ss_pred CCCCCCccccC-hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCCCc
Q 006458 366 NGNGFGDVILH-PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPLG 440 (644)
Q Consensus 366 ~~~~~~~vig~-~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~~g 440 (644)
.+.+|+++++. +.....+..+.....+.... +..+++|+||||||||+++++++..+ |..++.+++.++....
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPE--EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG--GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 34579999874 44555555444444333221 23569999999999999999999886 6666666654432100
Q ss_pred hhHH--HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 441 PQAV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 441 ~~~~--~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
.... .....++.. ...+.||||||++.. ..+......+..++.... ..+..+|+|||.+.
T Consensus 83 ~~~~~~~~~~~~~~~---~~~~~llilDE~~~~-------~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 83 KHLMDEGKDTKFLKT---VLNSPVLVLDDLGSE-------RLSDWQRELISYIITYRY--NNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTCCSHHHHH---HHTCSEEEEETCSSS-------CCCHHHHHHHHHHHHHHH--HTTCEEEEECCCCS
T ss_pred HHHhcCchHHHHHHH---hcCCCEEEEeCCCCC-------cCCHHHHHHHHHHHHHHH--HcCCCEEEEcCCCh
Confidence 0000 000011111 223789999999853 123455556666665442 23456777888764
No 88
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.13 E-value=3.7e-10 Score=122.54 Aligned_cols=222 Identities=15% Similarity=0.029 Sum_probs=124.9
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHH-HHHcCCCeEEEeCCCCC--C-Cch--hH--H
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAAREL-ARKSGLDYALMTGGDVA--P-LGP--QA--V 444 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaL-A~~l~~~~~~i~~~~l~--~-~g~--~~--~ 444 (644)
|+|++.++..|.-.+.... .+ ....-|+||.|+||| ||++++++ ++.+.... +..+.... . .+. +. .
T Consensus 215 I~G~e~vK~aLll~L~GG~-~k--~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~ 289 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV-GK--NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGW 289 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC-SS--GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSE
T ss_pred cCCCHHHHHHHHHHHcCCc-cc--cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCc
Confidence 7788877666633221110 00 011127999999999 99999999 77654432 22221000 0 000 00 0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC------CCCCCEEEEEEeCCCC------
Q 006458 445 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------DQSKDIVLALATNRPG------ 512 (644)
Q Consensus 445 ~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~------~~~~~viiI~ttN~~~------ 512 (644)
..-...+..| .++|+||||++.+ +...+..|...++.-. ..+.++.||+|+|...
T Consensus 290 ~~~~G~l~LA----dgGvl~lDEIn~~---------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~ 356 (506)
T 3f8t_A 290 ALRAGAAVLA----DGGILAVDHLEGA---------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDP 356 (506)
T ss_dssp EEEECHHHHT----TTSEEEEECCTTC---------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSC
T ss_pred ccCCCeeEEc----CCCeeehHhhhhC---------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCC
Confidence 0000112122 2579999999997 3344555555544311 2346799999999865
Q ss_pred -----CCCHHHhcccceeEe-cCCCCHHHHH---------HHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCH
Q 006458 513 -----DLDSAVADRIDEVLE-FPLPGQEERF---------KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 577 (644)
Q Consensus 513 -----~ld~al~~Rfd~~i~-~~~p~~~er~---------~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (644)
.|++++++|||.++. ++.|+.+.-. ..++.|..... .......+++
T Consensus 357 s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar-------------------~~~~~p~ls~ 417 (506)
T 3f8t_A 357 PIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAI-------------------REHPAPELTE 417 (506)
T ss_dssp GGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHH-------------------HHCSCCEECH
T ss_pred CccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHH-------------------hcCCCceeCH
Confidence 788999999987664 4666554321 11111111100 0000112455
Q ss_pred HHHHHHHH-----------------HcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHhHH
Q 006458 578 DILMEAAA-----------------KTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 578 ~~l~~LA~-----------------~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~~~~~~ 631 (644)
+..+.|.. ..-|.|+|.+..|++..++.+.-.....++.+|+..++........
T Consensus 418 ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 418 EARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 44433332 1347899999999999998888888899999999999998765443
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=4.8e-10 Score=104.52 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 475 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r 475 (644)
+...++|+||+|+|||+|+++++..+ |..++++++.++... .+ ...+.||+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------~~------~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------DA------AFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------GG------GGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------HH------HhCCCEEEEeCccccChH-
Confidence 33569999999999999999999987 777888888776543 00 123689999999985321
Q ss_pred ccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC-CCCCC--HHHhcccceeEecC
Q 006458 476 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PGDLD--SAVADRIDEVLEFP 529 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~-~~~ld--~al~~Rfd~~i~~~ 529 (644)
....+..++...... +..++|+|||. |..+. +.+.+||...+.+.
T Consensus 99 --------~~~~l~~li~~~~~~-g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 99 --------EQALLFSIFNRFRNS-GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp --------HHHHHHHHHHHHHHH-TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred --------HHHHHHHHHHHHHHc-CCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 133444444433222 12235567774 44332 89999985554443
No 90
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.00 E-value=1.8e-09 Score=114.00 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=123.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CC-CeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccch-hhhcc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GL-DYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA-FLCER 475 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~-~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~-l~~~r 475 (644)
..+|||||+|+||++.++.|++.+ +. ++..+... +......+........-..++.||+|||++. +.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-----PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-----TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-----CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 569999999999999999998875 32 22222111 1112222222222222234578999999998 62
Q ss_pred ccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhh
Q 006458 476 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIA 549 (644)
Q Consensus 476 ~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~ 549 (644)
....+.|+..++..+.+++||++++.++ .+.+.+.+|+ .++.|.+++..+....++..+.....
T Consensus 91 ---------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~ 160 (343)
T 1jr3_D 91 ---------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLNL 160 (343)
T ss_dssp ---------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTC
T ss_pred ---------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 1256677777887788888888776543 4567888899 89999999999999999988876432
Q ss_pred hhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 006458 550 QAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 626 (644)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~lt~~~~~~al~~~ 626 (644)
. ++++.+..|+..+.| +.+++.+.+..+. .+. +++.||.+++..++...
T Consensus 161 ~------------------------i~~~a~~~l~~~~~g-dl~~~~~elekl~--l~~-~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 161 E------------------------LDDAANQVLCYCYEG-NLLALAQALERLS--LLW-PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp E------------------------ECHHHHHHHHHSSTT-CHHHHHHHHHHHH--HHC-TTCEECHHHHHHHHHHH
T ss_pred C------------------------CCHHHHHHHHHHhch-HHHHHHHHHHHHH--Hhc-CCCCCCHHHHHHHHhhh
Confidence 2 789999999998865 6666666665332 232 34689999998877654
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.99 E-value=1.1e-08 Score=107.20 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=111.0
Q ss_pred CCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC------C-----
Q 006458 370 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA------P----- 438 (644)
Q Consensus 370 ~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~------~----- 438 (644)
-+.++|.+.....|...+.. + +.++|+||+|+|||++++.+++..+ ++++++.... +
T Consensus 11 ~~~~~gR~~el~~L~~~l~~-------~---~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN-------Y---PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH-------C---SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhc-------C---CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHH
Confidence 46789998888888665432 1 4699999999999999999999875 5566543221 0
Q ss_pred ------Cc----------------h-h---HHHHHHHHHHH----HHhcCCCeEEEEeccchhhhccccCcCCHHHHHHH
Q 006458 439 ------LG----------------P-Q---AVTKIHQLFDW----AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSAL 488 (644)
Q Consensus 439 ------~g----------------~-~---~~~~l~~~f~~----a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l 488 (644)
+. + . ....+..++.. +.... +.||||||++.+..... ..+......+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~--~~~~~~~~~L 155 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGS--RGGKELLALF 155 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTT--TTTHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCc--cchhhHHHHH
Confidence 00 0 0 00112222222 22223 78999999999743100 0112333444
Q ss_pred HHHHHHhCCCCCCEEEEEEeCCCC---------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcc
Q 006458 489 NALLFRTGDQSKDIVLALATNRPG---------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLV 559 (644)
Q Consensus 489 ~~lL~~~~~~~~~viiI~ttN~~~---------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~ 559 (644)
..++... .++.+|+|+.... .....+..|+...+.+++++.++...++...+.....
T Consensus 156 ~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---------- 221 (350)
T 2qen_A 156 AYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---------- 221 (350)
T ss_dssp HHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC----------
T ss_pred HHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC----------
Confidence 4444332 4777887765421 2222344566678999999999999988876543210
Q ss_pred hhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHH
Q 006458 560 HRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM 599 (644)
Q Consensus 560 ~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~ 599 (644)
.++++.+..+...|.|+ +.-|..++
T Consensus 222 --------------~~~~~~~~~i~~~tgG~-P~~l~~~~ 246 (350)
T 2qen_A 222 --------------DVPENEIEEAVELLDGI-PGWLVVFG 246 (350)
T ss_dssp --------------CCCHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHhCCC-HHHHHHHH
Confidence 14666777777777664 34455444
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.97 E-value=4.7e-10 Score=109.13 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=60.2
Q ss_pred CCCCCCccccCh-HHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCch
Q 006458 366 NGNGFGDVILHP-SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP 441 (644)
Q Consensus 366 ~~~~~~~vig~~-~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~ 441 (644)
...+|+++++.+ .....+..+.......... .++.+++|+||||||||+++++++..+ +.+++.+++.++.....
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 345799999865 4333444443333322211 123689999999999999999999987 67777777654321000
Q ss_pred h--HHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 006458 442 Q--AVTKIHQLFDWAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 442 ~--~~~~l~~~f~~a~~~~~~~VL~IDEid~l 471 (644)
. ....+..++..... +.+|||||++..
T Consensus 99 ~~~~~~~~~~~~~~~~~---~~~lilDei~~~ 127 (202)
T 2w58_A 99 HSLQDQTMNEKLDYIKK---VPVLMLDDLGAE 127 (202)
T ss_dssp HC---CCCHHHHHHHHH---SSEEEEEEECCC
T ss_pred HHhccchHHHHHHHhcC---CCEEEEcCCCCC
Confidence 0 00011222333322 469999999764
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.96 E-value=9.4e-09 Score=107.82 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=99.2
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCC-----CCch--
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-----PLGP-- 441 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~-----~~g~-- 441 (644)
..+.++|.+.....|.. +.. +.++|+||+|+|||++++.+++.++.+++++++.... +...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHH
Confidence 35678898877776654 321 3699999999999999999999988777788765431 0000
Q ss_pred ----------------------------------h------HHHHHHHHHHHHHhcC-CCeEEEEeccchhhhccccCcC
Q 006458 442 ----------------------------------Q------AVTKIHQLFDWAKKSK-RGLLLFIDEADAFLCERNKTYM 480 (644)
Q Consensus 442 ----------------------------------~------~~~~l~~~f~~a~~~~-~~~VL~IDEid~l~~~r~~~~~ 480 (644)
. ....+..++....... .+.||||||++.+.... ..
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-~~-- 155 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-GV-- 155 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-TC--
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-ch--
Confidence 0 0112334444444332 37899999999974311 11
Q ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC---------CCCHHHhcccceeEecCCCCHHHHHHHHHHHHHH
Q 006458 481 SEAQRSALNALLFRTGDQSKDIVLALATNRPG---------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 546 (644)
Q Consensus 481 ~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~---------~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~l~~ 546 (644)
.....+..++.. ..++.||+|++... .....+..|+...+.+++++.++...++...+..
T Consensus 156 --~~~~~l~~~~~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~ 224 (357)
T 2fna_A 156 --NLLPALAYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE 224 (357)
T ss_dssp --CCHHHHHHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH
Confidence 112234334332 24677888776431 1222344566678999999999999999887754
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.90 E-value=3.6e-09 Score=103.02 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=64.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 480 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~ 480 (644)
+++|||||||||||++|.+||+.++..++.+..+.. .. +........||+|||+|.-+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f-------------~l~~l~~~kIiiLDEad~~~~------- 117 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HF-------------WLEPLTDTKVAMLDDATTTCW------- 117 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CG-------------GGGGGTTCSSEEEEEECHHHH-------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hh-------------hhcccCCCCEEEEECCCchhH-------
Confidence 469999999999999999999998654433211110 00 011111245899999985210
Q ss_pred CHHHHHHHHHHHHH----hCCCC------CCEEEEEEeCCC---CCCCHHHhcccceeEecCCCC
Q 006458 481 SEAQRSALNALLFR----TGDQS------KDIVLALATNRP---GDLDSAVADRIDEVLEFPLPG 532 (644)
Q Consensus 481 ~~~~~~~l~~lL~~----~~~~~------~~viiI~ttN~~---~~ld~al~~Rfd~~i~~~~p~ 532 (644)
......+..++.. ++..+ ....+|+|||.. +..-..|.+|+ .++.|+.|-
T Consensus 118 -~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~~ 180 (212)
T 1tue_A 118 -TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNAF 180 (212)
T ss_dssp -HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSCC
T ss_pred -HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCCC
Confidence 1122234444433 12112 235788899973 33346788999 788888553
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.88 E-value=1.3e-07 Score=121.87 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=106.2
Q ss_pred CccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHH
Q 006458 371 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQL 450 (644)
Q Consensus 371 ~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~ 450 (644)
..+|.-|.....+..+..+.... .+.++.||+|||||++++.||+.+|.+++.++|++-... ..+..+
T Consensus 623 ~rlViTPltdr~~~tl~~Al~~~-------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~-----~~lg~~ 690 (2695)
T 4akg_A 623 ERLIYTPLLLIGFATLTDSLHQK-------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY-----QVLSRL 690 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTT-------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH-----HHHHHH
T ss_pred CcceecHHHHHHHHHHHHHHHhC-------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh-----hHhhHH
Confidence 45677777776666665554322 248999999999999999999999999999999875432 234556
Q ss_pred HHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHH----h----------C---CCCCCEEEEEEeCC---
Q 006458 451 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR----T----------G---DQSKDIVLALATNR--- 510 (644)
Q Consensus 451 f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~----~----------~---~~~~~viiI~ttN~--- 510 (644)
|..+... |.+++|||++.+ ......++...+.. + + ..+.++.|++|.|.
T Consensus 691 ~~g~~~~--Gaw~~~DE~nr~---------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~ 759 (2695)
T 4akg_A 691 LVGITQI--GAWGCFDEFNRL---------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN 759 (2695)
T ss_dssp HHHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS
T ss_pred HHHHHhc--CCEeeehhhhhc---------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc
Confidence 6666554 689999999986 22333333222221 1 0 13456788889994
Q ss_pred -CCCCCHHHhcccceeEecCCCCHHHHHHHHH
Q 006458 511 -PGDLDSAVADRIDEVLEFPLPGQEERFKLLK 541 (644)
Q Consensus 511 -~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~ 541 (644)
...+++++.+|| ..|.+..|+.+...+|+-
T Consensus 760 g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 760 GRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp SSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred CcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 457999999999 899999999998888764
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.82 E-value=4.5e-09 Score=102.72 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=79.6
Q ss_pred cEEEecCCCCChHHHHHHHHHH--------cC-CCeEEEeCCCCCC-Cc----------hhHH--HHHHHHHHHH-HhcC
Q 006458 402 NMLFYGPPGTGKTMAARELARK--------SG-LDYALMTGGDVAP-LG----------PQAV--TKIHQLFDWA-KKSK 458 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~--------l~-~~~~~i~~~~l~~-~g----------~~~~--~~l~~~f~~a-~~~~ 458 (644)
.+|++|+||||||++|..++.. .| .+++..+..++.. .. .... .....+++|+ ....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 5899999999999999886443 34 6666565544321 10 0000 0112344442 1123
Q ss_pred CCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhC-CCCCCEEEEEEeCCCCCCCHHHhcccceeEecCCCCHH
Q 006458 459 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQE 534 (644)
Q Consensus 459 ~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~-~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~ 534 (644)
+++||||||++.+++.+..... .. .++..+. .....+.||++|+.+..++..+++|++..+++..|...
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e--~~-----rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSK--IP-----ENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCC--CC-----HHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred CceEEEEEChhhhccCccccch--hH-----HHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 4789999999999765532211 11 1333332 34556788889999999999999999999999886543
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.78 E-value=8.7e-08 Score=124.18 Aligned_cols=137 Identities=18% Similarity=0.276 Sum_probs=91.6
Q ss_pred cEEEecCCCCChHHHHHHHHHH-cCCCeEEEeCCCCCCCchhHHHHHHHHHHHH----Hh-----------cCCCeEEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARK-SGLDYALMTGGDVAPLGPQAVTKIHQLFDWA----KK-----------SKRGLLLFI 465 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~-l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a----~~-----------~~~~~VL~I 465 (644)
++||+||||||||+++..+... .+.+++.++++.-... ..+...+..- .+ .++..||||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta-----~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP-----ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH-----HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH-----HHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 3999999999999877654443 4666778887664321 2233333211 00 011269999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHHhC--C-------CCCCEEEEEEeCCC-----CCCCHHHhcccceeEecCCC
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFRTG--D-------QSKDIVLALATNRP-----GDLDSAVADRIDEVLEFPLP 531 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~~~--~-------~~~~viiI~ttN~~-----~~ld~al~~Rfd~~i~~~~p 531 (644)
||++.- ..+..+ ....-..|..++..-+ + .-.++.||+|+|.| ..+++.|+||| .+++++.|
T Consensus 1381 DDiNmp--~~D~yG-tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~~p 1456 (3245)
T 3vkg_A 1381 DEINLP--STDKYG-TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLVDFP 1456 (3245)
T ss_dssp TTTTCC--CCCTTS-CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEECCCC
T ss_pred cccCCC--Cccccc-cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEeCCC
Confidence 999862 222111 2234556677765422 1 12478899999987 36899999999 88999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 006458 532 GQEERFKLLKLYLDKY 547 (644)
Q Consensus 532 ~~~er~~Il~~~l~~~ 547 (644)
+.+....|+..++...
T Consensus 1457 s~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1457 STSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.76 E-value=2e-09 Score=112.40 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=55.9
Q ss_pred CCCCCccccCh-HHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcC----CCeEEEeCCCCCC---
Q 006458 367 GNGFGDVILHP-SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----LDYALMTGGDVAP--- 438 (644)
Q Consensus 367 ~~~~~~vig~~-~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~----~~~~~i~~~~l~~--- 438 (644)
..+|+++++.. .....+..+......... .+..+++||||||||||+|+.++++.+. .+++.+++.++..
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 45799999754 323233333333322211 1346899999999999999999998654 6777776543311
Q ss_pred --CchhHHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 006458 439 --LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 439 --~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l 471 (644)
+... .+...+.... ...||||||++..
T Consensus 198 ~~~~~~---~~~~~~~~~~---~~~lLiiDdig~~ 226 (308)
T 2qgz_A 198 NAISNG---SVKEEIDAVK---NVPVLILDDIGAE 226 (308)
T ss_dssp CCCC-------CCTTHHHH---TSSEEEEETCCC-
T ss_pred HHhccc---hHHHHHHHhc---CCCEEEEcCCCCC
Confidence 1100 0111222222 2569999999764
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.66 E-value=1.4e-07 Score=95.88 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=70.8
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCc
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 479 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~ 479 (644)
.++++||||||||||+++.+||+.++. +-.++.+.-.. .+. ......|+++||.... .
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~~f-----------~l~---~~~~k~i~l~Ee~~~~-~------ 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNENF-----------PFN---DCVDKMVIWWEEGKMT-A------ 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCSSC-----------TTG---GGSSCSEEEECSCCEE-T------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccccc-----------ccc---cccccEEEEeccccch-h------
Confidence 357999999999999999999998654 22223221100 111 1122346666666543 1
Q ss_pred CCHHHHHHHHHHHHH----hC-CC-----CCCEEEEEEeCC-C----------CCCCHHHhcccceeEecC--------C
Q 006458 480 MSEAQRSALNALLFR----TG-DQ-----SKDIVLALATNR-P----------GDLDSAVADRIDEVLEFP--------L 530 (644)
Q Consensus 480 ~~~~~~~~l~~lL~~----~~-~~-----~~~viiI~ttN~-~----------~~ld~al~~Rfd~~i~~~--------~ 530 (644)
.....+..++.. ++ .. -..+.||+|||. + ....++|.+|+ .++.|+ +
T Consensus 162 ---d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~ 237 (267)
T 1u0j_A 162 ---KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGK 237 (267)
T ss_dssp ---TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCC
T ss_pred ---HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCC
Confidence 111234444431 11 11 145778889987 1 25568899999 899998 6
Q ss_pred CCHHHHHHHHH
Q 006458 531 PGQEERFKLLK 541 (644)
Q Consensus 531 p~~~er~~Il~ 541 (644)
.+.++....+.
T Consensus 238 lt~~~~~~f~~ 248 (267)
T 1u0j_A 238 VTKQEVKDFFR 248 (267)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77888888887
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.63 E-value=6.2e-08 Score=100.81 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=63.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC--CCC-CCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhcccc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG--GDV-APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNK 477 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~--~~l-~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~ 477 (644)
..++|+||||||||+|+..++...|.++++++. .+. ..+..+....+..++...... + +||||+++.+......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC-----
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEeccccccccccc
Confidence 347999999999999999999876555444443 222 112223344444555555543 2 9999999998554322
Q ss_pred C----cCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHH
Q 006458 478 T----YMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSA 517 (644)
Q Consensus 478 ~----~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~a 517 (644)
. ......+..+..|..... ..++.+|+++| +...+++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k--~~gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAA--SRGCVVIASLN-PTSNDDK 241 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHH--HHTCEEEEECC-CSSCSSS
T ss_pred ccccchHHHHHHHHHHHHHHHHh--hCCCEEEEEeC-Ccccchh
Confidence 1 112234455555544332 23567788888 4445544
No 101
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.55 E-value=8.9e-08 Score=118.54 Aligned_cols=144 Identities=11% Similarity=0.105 Sum_probs=87.3
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhh--------------chhc-----------------cCCCCcc--EEEecCCCC
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATA--------------NTKA-----------------HNAPFRN--MLFYGPPGT 411 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~--------------~~~~-----------------~~~p~~~--iLL~GppGt 411 (644)
....+|++|-|-++++..+...+.... .... .|.+|++ +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 344679999888887776644322211 0111 2445566 999999999
Q ss_pred ChHHHHHHHHHHc---CCCeEEEeCCCCC-------------CCchh----HHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 006458 412 GKTMAARELARKS---GLDYALMTGGDVA-------------PLGPQ----AVTKIHQLFDWAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 412 GKT~lAkaLA~~l---~~~~~~i~~~~l~-------------~~g~~----~~~~l~~~f~~a~~~~~~~VL~IDEid~l 471 (644)
|||+||++++.+. |-+.+.++..... .+..+ ++..+..+|..++... +|+||+|+++.|
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~-~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDSVAAL 1172 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESCGGGC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC-CeEEEeCchHhc
Confidence 9999999998876 5566666654422 12233 5677877887776554 899999999999
Q ss_pred hhcccc---Cc--CCHHHHHHHHHHHHHhCC--CCCCEEEEEEeCC
Q 006458 472 LCERNK---TY--MSEAQRSALNALLFRTGD--QSKDIVLALATNR 510 (644)
Q Consensus 472 ~~~r~~---~~--~~~~~~~~l~~lL~~~~~--~~~~viiI~ttN~ 510 (644)
.+.+.. .. .......+++.+|..++. ...+|+|| +||+
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 988431 11 123445578888888752 33566666 6665
No 102
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.53 E-value=9.7e-08 Score=78.65 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC
Q 006458 529 PLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG 608 (644)
Q Consensus 529 ~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~ 608 (644)
|+|+.++|..||+.++.++.. -++.++..||..|+||||+||..+|..+...+..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~-------------------------~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~ 55 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL-------------------------TRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 55 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE-------------------------CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCC-------------------------CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999876421 1334689999999999999999999655444444
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 006458 609 SENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 609 ~~~~~lt~~~~~~al~~~~~ 628 (644)
.+...||.++|..+++....
T Consensus 56 ~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 56 ERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp TTCSEECHHHHHHHHHHHHC
T ss_pred hCCCCCCHHHHHHHHHHHHh
Confidence 55689999999999987653
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=4.6e-06 Score=108.42 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=100.5
Q ss_pred ccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHH
Q 006458 372 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLF 451 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f 451 (644)
.+|--|-.......+..+.... .+..+.||+|||||.+++.||+.+|.+++.++|++-..+. .+..+|
T Consensus 583 rLViTPLTdrcy~tl~~Al~~~-------~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~-----~~g~i~ 650 (3245)
T 3vkg_A 583 RLVQTPLTDRCYLTLTQALESR-------MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQ-----AMSRIF 650 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTT-------CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHH-----HHHHHH
T ss_pred CCcCChHHHHHHHHHHHHHHhc-------CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHH-----HHHHHH
Confidence 4555555555555554444322 2357899999999999999999999999999998754332 234455
Q ss_pred HHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHH--------H-----h--C---CCCCCEEEEEEeCC---
Q 006458 452 DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF--------R-----T--G---DQSKDIVLALATNR--- 510 (644)
Q Consensus 452 ~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~--------~-----~--~---~~~~~viiI~ttN~--- 510 (644)
..+... |...+||||+.+ ....-.++...+. . + + ....++.|++|+|.
T Consensus 651 ~G~~~~--GaW~cfDEfNrl---------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 651 VGLCQC--GAWGCFDEFNRL---------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp HHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred hhHhhc--CcEEEehhhhcC---------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 555544 789999999997 2222223222222 1 0 1 12346788889984
Q ss_pred -CCCCCHHHhcccceeEecCCCCHHHHHHHHH
Q 006458 511 -PGDLDSAVADRIDEVLEFPLPGQEERFKLLK 541 (644)
Q Consensus 511 -~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~ 541 (644)
...++..+.+|| +.|.+..|+.+...+|+-
T Consensus 720 gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 720 GRSNLPDNLKKLF-RSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp GCCCSCHHHHTTE-EEEECCSCCHHHHHHHHH
T ss_pred CcccChHHHHhhc-EEEEEeCCCHHHHHHHHH
Confidence 458999999999 889999999998888753
No 104
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.36 E-value=2.9e-07 Score=77.36 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=59.8
Q ss_pred ecCCCCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 006458 527 EFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV 606 (644)
Q Consensus 527 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~ 606 (644)
+-.+|+.++|..||+.++.+.... ++.+++.||..|+||||+||..||..+...+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-------------------------~dvdl~~LA~~T~G~SGADL~~l~~eAa~~a 61 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-------------------------RGINLRKIAELMPGASGAEVKGVCTEAGMYA 61 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-------------------------TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-------------------------cccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999998764211 2345889999999999999999996544333
Q ss_pred hCCCCCccCHHHHHHHHHHHHH
Q 006458 607 YGSENCVLDPSLFREVVDYKVA 628 (644)
Q Consensus 607 ~~~~~~~lt~~~~~~al~~~~~ 628 (644)
.......||.++|..+++....
T Consensus 62 lr~~~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 62 LRERRVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp HHTTCSEECHHHHHHHHHHHHC
T ss_pred HHHcCCCCCHHHHHHHHHHHcc
Confidence 3344589999999999987653
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.31 E-value=2.1e-06 Score=82.16 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=23.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLD 427 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~ 427 (644)
.+.|+||+|+|||||++.|+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999987643
No 106
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.16 E-value=7.5e-07 Score=75.14 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCC
Q 006458 532 GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSEN 611 (644)
Q Consensus 532 ~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~ 611 (644)
+.++|..||+.++.+... -++.++..||..|+||||+||..||..+...+.....
T Consensus 2 d~~~R~~Il~~~~~~~~~-------------------------~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~ 56 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV-------------------------ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 56 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB-------------------------CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHCCCCC-------------------------CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 567899999998865321 1334689999999999999999999533333333344
Q ss_pred CccCHHHHHHHHHHHHHhHHHHHHhh
Q 006458 612 CVLDPSLFREVVDYKVAEHQQRRKLA 637 (644)
Q Consensus 612 ~~lt~~~~~~al~~~~~~~~~~~~~~ 637 (644)
..||.+||..+++..+.+...+...+
T Consensus 57 ~~i~~~df~~Al~~v~~~~~~~~~~~ 82 (88)
T 3vlf_B 57 KVATEKDFLKAVDKVISGYKKFSSTS 82 (88)
T ss_dssp SSBCHHHHHHHHHHHTC---------
T ss_pred ccCCHHHHHHHHHHHhcCcccccchh
Confidence 78999999999999887776655443
No 107
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.02 E-value=8.7e-05 Score=83.68 Aligned_cols=145 Identities=18% Similarity=0.117 Sum_probs=81.2
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHH-------cCCCeEEEeCCCCCC---
Q 006458 369 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK-------SGLDYALMTGGDVAP--- 438 (644)
Q Consensus 369 ~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~-------l~~~~~~i~~~~l~~--- 438 (644)
....+||.+.....|...+... ....+.++|+||+|+|||++|..+++. +...++.++.+....
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~ 195 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL 195 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHH
Confidence 4567999999888887765321 122356999999999999999998642 222234443322100
Q ss_pred -------------------CchhHHHH-HHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCC
Q 006458 439 -------------------LGPQAVTK-IHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 498 (644)
Q Consensus 439 -------------------~g~~~~~~-l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~ 498 (644)
........ ...+........++.+|+||+++.. . . +..+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------~---~----l~~l--- 254 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------W---V----LKAF--- 254 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------H---H----HHTT---
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------H---H----HHHh---
Confidence 00001111 1222222333334789999999852 1 1 1222
Q ss_pred CCCEEEEEEeCCCCCCCHHHhcccceeEec---CCCCHHHHHHHHHHHH
Q 006458 499 SKDIVLALATNRPGDLDSAVADRIDEVLEF---PLPGQEERFKLLKLYL 544 (644)
Q Consensus 499 ~~~viiI~ttN~~~~ld~al~~Rfd~~i~~---~~p~~~er~~Il~~~l 544 (644)
..++.||+||........ + . +..+.+ ..++.++-..++..++
T Consensus 255 ~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~ 299 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFV 299 (591)
T ss_dssp CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHh
Confidence 345677778875431110 0 0 223333 4688888888887765
No 108
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.96 E-value=6.8e-06 Score=68.26 Aligned_cols=76 Identities=9% Similarity=0.105 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCC
Q 006458 531 PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSE 610 (644)
Q Consensus 531 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~ 610 (644)
.+.++|..||+.++.+... -++.++..||..|+||||+||..+|..+...+....
T Consensus 1 ~d~~~R~~Il~~~l~~~~~-------------------------~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNL-------------------------SEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCB-------------------------CTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CCHHHHHHHHHHHhCCCCC-------------------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3678999999998865321 123458999999999999999999976555555555
Q ss_pred CCccCHHHHHHHHHHHHHhHH
Q 006458 611 NCVLDPSLFREVVDYKVAEHQ 631 (644)
Q Consensus 611 ~~~lt~~~~~~al~~~~~~~~ 631 (644)
...||.++|..++........
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 688999999999998765443
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.90 E-value=1.5e-05 Score=100.15 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=50.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC------Cc-----------hhHHHHHHHHHHHHHhcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------LG-----------PQAVTKIHQLFDWAKKSK 458 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~------~g-----------~~~~~~l~~~f~~a~~~~ 458 (644)
+..+++||||||||||+||.+++... |..+++++...... +| ......+..++..+. ..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr-~~ 1504 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR-SG 1504 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH-HT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh-cC
Confidence 44689999999999999999997764 55666666543311 11 112233444444444 44
Q ss_pred CCeEEEEeccchhhhc
Q 006458 459 RGLLLFIDEADAFLCE 474 (644)
Q Consensus 459 ~~~VL~IDEid~l~~~ 474 (644)
.+++||||+++.+++.
T Consensus 1505 ~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp CCSEEEESCGGGCCCH
T ss_pred CCCEEEEcChhHhccc
Confidence 5899999999988764
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.90 E-value=3.2e-06 Score=81.31 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=58.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC---C-----CC-Cch----hHHHHHHHHHHHHHhcCCCeEEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD---V-----AP-LGP----QAVTKIHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~---l-----~~-~g~----~~~~~l~~~f~~a~~~~~~~VL~I 465 (644)
-++++||||+|||+++..++..+ |..++.+.... . .. .+. ........++..+. ..+.+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--CCCCEEEE
Confidence 47899999999999987666553 55555443210 0 00 000 00011122222221 24789999
Q ss_pred eccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEE---eC---CCCCCCHHHhcccceeEecCC
Q 006458 466 DEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALA---TN---RPGDLDSAVADRIDEVLEFPL 530 (644)
Q Consensus 466 DEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~t---tN---~~~~ld~al~~Rfd~~i~~~~ 530 (644)
||+..+. +.....+..+. +. ++.||++ +| .+....+.++++.|.+..+..
T Consensus 83 DE~Q~~~---------~~~~~~l~~l~---~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 83 DEVQFFN---------PSLFEVVKDLL---DR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp CCGGGSC---------TTHHHHHHHHH---HT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred ECcccCC---------HHHHHHHHHHH---HC---CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 9999862 12233333333 22 3334433 23 333445677888877766653
No 111
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.86 E-value=0.00027 Score=78.92 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=56.5
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--CCCHHHhcccceeEecCCCCHHHHH
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG--DLDSAVADRIDEVLEFPLPGQEERF 537 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~--~ld~al~~Rfd~~i~~~~p~~~er~ 537 (644)
+.||||||+..|+.... ......+..+... ....++.+|++|.+|. .++..+++-|...|.|...+..+..
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~--GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr 416 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQK--ARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSR 416 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHHH--CTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHHH--HhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHH
Confidence 47999999998865321 2333344444433 3667899999999987 8999999999999999999998887
Q ss_pred HHHH
Q 006458 538 KLLK 541 (644)
Q Consensus 538 ~Il~ 541 (644)
.||.
T Consensus 417 ~ILd 420 (574)
T 2iut_A 417 TILD 420 (574)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 7764
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.84 E-value=6.6e-05 Score=72.96 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=29.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~ 435 (644)
..++|+||||+|||+|+..++...+.++++++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 35899999999999999999886677777777654
No 113
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.83 E-value=0.00012 Score=70.79 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=74.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC--C--------CCCc-------------h----hHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD--V--------APLG-------------P----QAVTKIHQL 450 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~--l--------~~~g-------------~----~~~~~l~~~ 450 (644)
..|++|+++|+|||++|-.+|-.. |..+..+.... . ..++ . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999997664 77777663211 0 0010 0 011223334
Q ss_pred HHHHHh---cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhcccceeEe
Q 006458 451 FDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLE 527 (644)
Q Consensus 451 f~~a~~---~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~Rfd~~i~ 527 (644)
+..+.. ...+++|+|||+...+.-.- .+ ...++..+...+.+.-+|+|+|.+ ++.|+..-|.+-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~---l~------~~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~AD~VTe 176 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY---LP------LEEVISALNARPGHQTVIITGRGC---HRDILDLADTVSE 176 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS---SC------HHHHHHHHHTSCTTCEEEEECSSC---CHHHHHHCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC---CC------HHHHHHHHHhCcCCCEEEEECCCC---cHHHHHhCcceee
Confidence 444443 35689999999976422111 01 223445555677888999999984 7888888887777
Q ss_pred cCC
Q 006458 528 FPL 530 (644)
Q Consensus 528 ~~~ 530 (644)
+..
T Consensus 177 m~~ 179 (196)
T 1g5t_A 177 LRP 179 (196)
T ss_dssp CCC
T ss_pred ecc
Confidence 643
No 114
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.82 E-value=1.6e-05 Score=85.01 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=61.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhh-cccc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC-ERNK 477 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~-~r~~ 477 (644)
+...++|+||||+||||+++.|+..++..++.+.... .. .... ........++|+||++.+.. .+.-
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~---~~--~~~~-------lg~~~q~~~~l~dd~~~~~~~~r~l 235 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL---DR--LNFE-------LGVAIDQFLVVFEDVKGTGGESRDL 235 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT---TT--HHHH-------HGGGTTCSCEEETTCCCSTTTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc---hh--HHHH-------HHHhcchhHHHHHHHHHHHHHHhhc
Confidence 3357999999999999999999998877655433221 00 0000 11112245789999998764 2211
Q ss_pred CcCCHH-HHHHHHHHHHHhCCCCCCEEEEEEeCCCCCCCHHHhc--ccceeEec
Q 006458 478 TYMSEA-QRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD--RIDEVLEF 528 (644)
Q Consensus 478 ~~~~~~-~~~~l~~lL~~~~~~~~~viiI~ttN~~~~ld~al~~--Rfd~~i~~ 528 (644)
...... ....+..++ + +.+.+++++|+++.+ +.+++ |++..++.
T Consensus 236 ~~~~~~~~~~~l~~~l---d---G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 236 PSGQGINNLDNLRDYL---D---GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp CCCSHHHHHHTTHHHH---H---CSSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred cccCcchHHHHHHHHh---c---CCCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 110110 112222222 1 235677788888877 45544 45444444
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.76 E-value=8.8e-05 Score=73.44 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=63.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC-------CCC-Cchh----HHHHHHHHHHHHHh---cCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD-------VAP-LGPQ----AVTKIHQLFDWAKK---SKRGLL 462 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~-------l~~-~g~~----~~~~l~~~f~~a~~---~~~~~V 462 (644)
.-++++||||+|||+++..++..+ |..++.++... +.. +|.. .......++..+.. ..++.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 348889999999999998887766 56666663221 111 1110 01112345554443 234789
Q ss_pred EEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeC------CCCCCCHHHhcccceeEecC
Q 006458 463 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN------RPGDLDSAVADRIDEVLEFP 529 (644)
Q Consensus 463 L~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN------~~~~ld~al~~Rfd~~i~~~ 529 (644)
|+|||+..|. ...-..+..+.. . ++.||++.. .|....+.|+..-|.+..+.
T Consensus 93 ViIDEaQ~l~---------~~~ve~l~~L~~----~--gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 93 IGIDEVQFFD---------DRICEVANILAE----N--GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp EEECSGGGSC---------THHHHHHHHHHH----T--TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred EEEecCccCc---------HHHHHHHHHHHh----C--CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 9999998752 222233333321 1 456666654 23344466666566666654
No 116
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.74 E-value=8.8e-05 Score=73.30 Aligned_cols=122 Identities=18% Similarity=0.182 Sum_probs=71.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCC---------CCCc----------hh--HHHHHHHHHHHHHh
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV---------APLG----------PQ--AVTKIHQLFDWAKK 456 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l---------~~~g----------~~--~~~~l~~~f~~a~~ 456 (644)
-++++.|+||||||+++-.+|..+ |..++.++...- .... +. ....+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 369999999999999999988775 777665554321 0000 00 0012222221
Q ss_pred cCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCC------------------CCCCCHHH
Q 006458 457 SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------------PGDLDSAV 518 (644)
Q Consensus 457 ~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~------------------~~~ld~al 518 (644)
. .|.+|+|||+......... .......+..++ ...+-++.|+|. .+.++..+
T Consensus 83 ~-~pdlvIVDElG~~~~~~~r---~~~~~qDV~~~l------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~ 152 (228)
T 2r8r_A 83 A-APSLVLVDELAHTNAPGSR---HTKRWQDIQELL------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWV 152 (228)
T ss_dssp H-CCSEEEESCTTCBCCTTCS---SSBHHHHHHHHH------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHH
T ss_pred c-CCCEEEEeCCCCCCcccch---hHHHHHHHHHHH------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHH
Confidence 2 3789999999864111111 111111222222 334566777772 25678889
Q ss_pred hcccceeEecCCCCHHHH
Q 006458 519 ADRIDEVLEFPLPGQEER 536 (644)
Q Consensus 519 ~~Rfd~~i~~~~p~~~er 536 (644)
+++.|.++.++.|..+-+
T Consensus 153 ~~~a~~v~lvD~~p~~l~ 170 (228)
T 2r8r_A 153 LQEAFDLVLIDLPPRELL 170 (228)
T ss_dssp HHTCSEEEEBCCCHHHHH
T ss_pred HhhCCeEEEecCCHHHHH
Confidence 999999888888876633
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.71 E-value=0.00018 Score=70.92 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=28.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHH--c-------CCCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARK--S-------GLDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~--l-------~~~~~~i~~~~ 435 (644)
..++|+||||+|||+|++.++.. + +...+++++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 35899999999999999999985 3 34567777655
No 118
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.71 E-value=0.00011 Score=80.52 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=34.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+.+.+|+++ .++.+..+..+........ ++++|+||||||||+++..++..+
T Consensus 18 ~~p~~~~~L--n~~Q~~av~~~~~~i~~~~------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 18 GSHMTFDDL--TEGQKNAFNIVMKAIKEKK------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---CCSSCC--CHHHHHHHHHHHHHHHSSS------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccccC--CHHHHHHHHHHHHHHhcCC------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444567776 4555555555544433211 269999999999999999998876
No 119
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.66 E-value=0.00022 Score=70.59 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=24.4
Q ss_pred ccEEEecCCCCChHHHHHHHH--HH--cCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELA--RK--SGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA--~~--l~~~~~~i~~ 433 (644)
..+.|+||+|+|||||++.|+ .. .+...+++++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 358999999999999999998 32 2444445443
No 120
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.62 E-value=0.00016 Score=72.69 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC
Q 006458 379 LQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436 (644)
Q Consensus 379 ~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l 436 (644)
+...+..+.............+..++|.||||+||||+++.|+..++.+++.+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3344444443333222334445679999999999999999999999877777777655
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.61 E-value=0.00054 Score=74.44 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=50.3
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC---------------------CchhHHHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP---------------------LGPQAVTKIHQLFDWA 454 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~---------------------~g~~~~~~l~~~f~~a 454 (644)
++..++|+||+|+||||++..||..+ |..+..+++..+.+ .+.+....+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876 67777776654311 1223333445556666
Q ss_pred HhcCCCeEEEEeccchh
Q 006458 455 KKSKRGLLLFIDEADAF 471 (644)
Q Consensus 455 ~~~~~~~VL~IDEid~l 471 (644)
.... +++||||....+
T Consensus 179 ~~~~-~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKG-VDIIIVDTAGRH 194 (443)
T ss_dssp HHTT-CSEEEEECCCCS
T ss_pred HhCC-CCEEEEECCCcc
Confidence 5443 789999998754
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.60 E-value=0.00019 Score=70.09 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=25.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~ 432 (644)
..++|+||||+|||+|++.++..+ +..+++++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999998654 44555554
No 123
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.59 E-value=6.9e-05 Score=72.27 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|+||+|+||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.54 E-value=0.00032 Score=74.58 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=48.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC------Cc----------hhHHHHHHHHHHHHHhcCCCe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------LG----------PQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~------~g----------~~~~~~l~~~f~~a~~~~~~~ 461 (644)
..++|+||||+|||+||..++..+ |.++++++...... .+ ......+...+....+...++
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 458999999999999999998764 66777777543211 01 012233334444444445578
Q ss_pred EEEEeccchhhh
Q 006458 462 LLFIDEADAFLC 473 (644)
Q Consensus 462 VL~IDEid~l~~ 473 (644)
+||||.+..+.+
T Consensus 155 lVVIDsl~~l~~ 166 (366)
T 1xp8_A 155 VVVVDSVAALTP 166 (366)
T ss_dssp EEEEECTTTCCC
T ss_pred EEEEeChHHhcc
Confidence 999999999874
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.54 E-value=0.00056 Score=83.28 Aligned_cols=148 Identities=19% Similarity=0.160 Sum_probs=84.6
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc---C----CCeEEEeCCCCCC--
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---G----LDYALMTGGDVAP-- 438 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l---~----~~~~~i~~~~l~~-- 438 (644)
.....+||.+.....|...+... ....+.+.|+|+.|+|||+||+.+++.. . ..++.++.+....
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 34567999999888887765322 1233568999999999999999987652 2 2233444333110
Q ss_pred --------------------CchhHHHHHHHHHHHH-HhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCC
Q 006458 439 --------------------LGPQAVTKIHQLFDWA-KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 497 (644)
Q Consensus 439 --------------------~g~~~~~~l~~~f~~a-~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~ 497 (644)
........+...+... ....+..+|+||+++.. . .+. .
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------~---~~~-------~ 253 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------W---VLK-------A 253 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------H---HHT-------T
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------H---HHH-------h
Confidence 0001111222222211 11123679999999863 1 111 1
Q ss_pred CCCCEEEEEEeCCCCCCCHHHhcccceeEecCC-CCHHHHHHHHHHHH
Q 006458 498 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPL-PGQEERFKLLKLYL 544 (644)
Q Consensus 498 ~~~~viiI~ttN~~~~ld~al~~Rfd~~i~~~~-p~~~er~~Il~~~l 544 (644)
...+..||+||........ + ......+.++. ++.++-..++..+.
T Consensus 254 ~~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 254 FDNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp TCSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred hcCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhh
Confidence 2445678888876543211 0 12235677775 88888888887665
No 126
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.51 E-value=0.00092 Score=69.29 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=28.4
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
++..++|+||+|+||||++..||..+ +..+..+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 44679999999999999999999876 5556555543
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.49 E-value=0.00065 Score=66.23 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|+||+|+|||+|++.|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999854
No 128
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.49 E-value=0.00081 Score=74.42 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=52.7
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCC--CCCHHHhcccceeEecCCCCHHHHH
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG--DLDSAVADRIDEVLEFPLPGQEERF 537 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~--~ld~al~~Rfd~~i~~~~p~~~er~ 537 (644)
+.||+|||+..++... .......+..+...- ...++.+|++|.++. .++..+++.|...|-|...+..+..
T Consensus 298 ~ivlvIDE~~~ll~~~-----~~~~~~~l~~Lar~g--Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr 370 (512)
T 2ius_A 298 YIVVLVDEFADLMMTV-----GKKVEELIARLAQKA--RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 370 (512)
T ss_dssp EEEEEEETHHHHHHHH-----HHHHHHHHHHHHHHC--GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHH
T ss_pred cEEEEEeCHHHHHhhh-----hHHHHHHHHHHHHHh--hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHH
Confidence 3589999998875421 012222333332221 344788889999887 6888899999999999999999988
Q ss_pred HHHHH
Q 006458 538 KLLKL 542 (644)
Q Consensus 538 ~Il~~ 542 (644)
.|+..
T Consensus 371 ~ilg~ 375 (512)
T 2ius_A 371 TILDQ 375 (512)
T ss_dssp HHHSS
T ss_pred HhcCC
Confidence 77754
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.46 E-value=0.00039 Score=73.49 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=47.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC------Cc----------hhHHHHHHHHHHHHHhcCCCe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------LG----------PQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~------~g----------~~~~~~l~~~f~~a~~~~~~~ 461 (644)
..++|+||||+|||+|+..++..+ +..+++++...... +| ......+..+.........+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 458999999999999999998654 56677776543211 11 011222333333333344589
Q ss_pred EEEEeccchhhh
Q 006458 462 LLFIDEADAFLC 473 (644)
Q Consensus 462 VL~IDEid~l~~ 473 (644)
+||||++..+++
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999874
No 130
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.45 E-value=9.5e-05 Score=69.54 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=29.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
..|+|+||||+||||+++.|+..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458999999999999999999999988887654
No 131
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.45 E-value=0.00046 Score=73.00 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=48.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC----------------CchhHHHHHHHHHHHHHhcCCCe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP----------------LGPQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~----------------~g~~~~~~l~~~f~~a~~~~~~~ 461 (644)
..++|+||||+|||+|+..++..+ +..++++++..... ........+...+....+...+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 358999999999999999998774 56777777654211 00111222223333333345578
Q ss_pred EEEEeccchhhh
Q 006458 462 LLFIDEADAFLC 473 (644)
Q Consensus 462 VL~IDEid~l~~ 473 (644)
+|+||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999998875
No 132
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.44 E-value=0.00017 Score=74.09 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC
Q 006458 377 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 435 (644)
Q Consensus 377 ~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~ 435 (644)
.++...+..++............+..|+|.||||+||||+++.|+..++..++.+++..
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 34445555544444333333334567999999999999999999999865666776533
No 133
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.44 E-value=1.7e-05 Score=65.70 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCcchhhhhhhhhhhhccCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCc
Q 006458 534 EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCV 613 (644)
Q Consensus 534 ~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~LA~~t~G~SgrdI~~L~~~~~aa~~~~~~~~ 613 (644)
++|..||+.++.+... -++.++..||..|+||||+||..+|..+...+.......
T Consensus 1 ~~R~~Il~~~l~~~~~-------------------------~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~ 55 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-------------------------APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 55 (82)
T ss_dssp -------------CEE-------------------------CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHcCCCC-------------------------CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 3577888888765421 122357889999999999999999964433333344578
Q ss_pred cCHHHHHHHHHHHHH
Q 006458 614 LDPSLFREVVDYKVA 628 (644)
Q Consensus 614 lt~~~~~~al~~~~~ 628 (644)
||.+||..++...+.
T Consensus 56 i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 56 ILQSDLEEAYATQVK 70 (82)
T ss_dssp ECHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHc
Confidence 999999999987753
No 134
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.43 E-value=7e-05 Score=71.00 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=28.8
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.++|+|+||||||||++++.|++.+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999888754
No 135
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.39 E-value=0.00017 Score=67.13 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=26.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 489999999999999999999999777544
No 136
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.00041 Score=73.49 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=49.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC------Cc----------hhHHHHHHHHHHHHHhcCCCe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------LG----------PQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~------~g----------~~~~~~l~~~f~~a~~~~~~~ 461 (644)
..++|+||||+|||+||..++..+ |.++++++...... ++ ......+..++....+...+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 458999999999999999998764 66777787643211 00 011233444444444445588
Q ss_pred EEEEeccchhhh
Q 006458 462 LLFIDEADAFLC 473 (644)
Q Consensus 462 VL~IDEid~l~~ 473 (644)
+||||.+..+..
T Consensus 144 lVVIDsl~~l~~ 155 (356)
T 1u94_A 144 VIVVDSVAALTP 155 (356)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcCHHHhcc
Confidence 999999999874
No 137
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.36 E-value=0.0034 Score=68.91 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+...++|+||+|+||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568999999999999999999876
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.35 E-value=0.001 Score=72.12 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
++..++|+||+|+||||++..||..+ |..+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 45789999999999999999998776 6667666654
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.33 E-value=0.0023 Score=71.58 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=78.5
Q ss_pred ccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHH----HcCCCe---EEEeCCCCCC--------
Q 006458 374 ILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELAR----KSGLDY---ALMTGGDVAP-------- 438 (644)
Q Consensus 374 ig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~----~l~~~~---~~i~~~~l~~-------- 438 (644)
+|.+.....|...+... .....+.+.|+|++|+|||+||+.+++ .....| +.++.+....
T Consensus 131 ~GR~~~~~~l~~~L~~~-----~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-----CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-----TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-----cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 48888888886655322 122346799999999999999999997 333222 2333322110
Q ss_pred -----Cc------------hhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCC
Q 006458 439 -----LG------------PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD 501 (644)
Q Consensus 439 -----~g------------~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~ 501 (644)
++ ......+...+......++..+|+||+++.. ... .+. .. .+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~~~----~~~-~~----~g 265 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------ETI----RWA-QE----LR 265 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------HHH----HHH-HH----TT
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------hhh----ccc-cc----CC
Confidence 00 0001112222222222222689999999873 111 111 11 45
Q ss_pred EEEEEEeCCCCCCCHHHhcccceeEecCCCCHHHHHHHHHHH
Q 006458 502 IVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLY 543 (644)
Q Consensus 502 viiI~ttN~~~~ld~al~~Rfd~~i~~~~p~~~er~~Il~~~ 543 (644)
..||+||....... .....+..+.++.++.++-..++..+
T Consensus 266 s~ilvTTR~~~v~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 266 LRCLVTTRDVEISN--AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp CEEEEEESBGGGGG--GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHH--HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 56777877532111 01112356889999999888877765
No 140
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.30 E-value=0.00051 Score=86.48 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=51.8
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC------Cch----------hHHHHHHHHHHHHHhcCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------LGP----------QAVTKIHQLFDWAKKSKR 459 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~------~g~----------~~~~~l~~~f~~a~~~~~ 459 (644)
+..++||+||||||||+|+..++.+. |.+.++++..+... .|. +.......+.....+...
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~ 1159 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1159 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCC
Confidence 44579999999999999999997653 77778887665422 000 011122344444555566
Q ss_pred CeEEEEeccchhhhc
Q 006458 460 GLLLFIDEADAFLCE 474 (644)
Q Consensus 460 ~~VL~IDEid~l~~~ 474 (644)
+++|+||++..|.+.
T Consensus 1160 ~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1160 VDVIVVDSVAALTPK 1174 (2050)
T ss_dssp CSEEEESCGGGCCCH
T ss_pred CCEEEECCccccccc
Confidence 899999999998554
No 141
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.00013 Score=70.47 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=28.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
...|+|+|||||||||+++.|+..+|.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 35799999999999999999999999887654
No 142
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.28 E-value=0.0013 Score=69.56 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=27.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC---------CCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG---------LDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~---------~~~~~i~~~~ 435 (644)
..+.|+||||+|||+|++.++..+. ..++++++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4589999999999999999998862 3456776644
No 143
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.0012 Score=69.43 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=28.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---------CCCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---------~~~~~~i~~~~ 435 (644)
..++|+||||+|||+|+..++... +..+++++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 358999999999999999999873 45677776654
No 144
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.27 E-value=0.00093 Score=69.70 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=47.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---------CCCeEEEeCCCCC-C---------Cchh--------------HHH--
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGDVA-P---------LGPQ--------------AVT-- 445 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---------~~~~~~i~~~~l~-~---------~g~~--------------~~~-- 445 (644)
..++|+||||+|||+++..++... +..+++++..... . ++.. ...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 187 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQ 187 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHH
Confidence 458999999999999999999875 4567777765421 0 1100 011
Q ss_pred --HHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 006458 446 --KIHQLFDWAKKSKRGLLLFIDEADAFLCE 474 (644)
Q Consensus 446 --~l~~~f~~a~~~~~~~VL~IDEid~l~~~ 474 (644)
.+..+.........+.+|+||.+..+...
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 12223333333245899999999998753
No 145
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.25 E-value=0.00035 Score=72.40 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=49.4
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHc-----CCCeEEEeCCCCCC------Cch----------hHHHHH-HHHHHH
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP------LGP----------QAVTKI-HQLFDW 453 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l-----~~~~~~i~~~~l~~------~g~----------~~~~~l-~~~f~~ 453 (644)
+|.|...++|+||||+|||+|+-.++... +..++++++..-.. +|. .....+ ..+.+.
T Consensus 24 GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 24 GGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 44555568999999999999988876553 56677777543211 111 112222 223333
Q ss_pred H--HhcCCCeEEEEeccchhhh
Q 006458 454 A--KKSKRGLLLFIDEADAFLC 473 (644)
Q Consensus 454 a--~~~~~~~VL~IDEid~l~~ 473 (644)
+ .+...+.+|+||-+..|.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 3 3445689999999999975
No 146
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.22 E-value=0.00016 Score=68.22 Aligned_cols=31 Identities=52% Similarity=0.817 Sum_probs=27.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|+|+||+|||++++.|+..++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5699999999999999999999998877644
No 147
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.21 E-value=0.00018 Score=68.14 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=27.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.|+|+|+||+|||++++.|+..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999998876543
No 148
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.20 E-value=0.00018 Score=67.18 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..+|+|.|+|||||||+++.|+..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999988754
No 149
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.17 E-value=0.0016 Score=65.60 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=28.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHH---cCCCeEEEeCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARK---SGLDYALMTGG 434 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~---l~~~~~~i~~~ 434 (644)
..|+|+|+||+||||+++.|+.. .|.+++.++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 46999999999999999999998 68887756543
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.16 E-value=0.00024 Score=68.36 Aligned_cols=31 Identities=39% Similarity=0.604 Sum_probs=27.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|+|+||+||||+++.|+..+|.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4699999999999999999999999887654
No 151
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.15 E-value=0.00023 Score=66.96 Aligned_cols=29 Identities=38% Similarity=0.553 Sum_probs=26.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.++|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999987764
No 152
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.10 E-value=0.0029 Score=62.27 Aligned_cols=33 Identities=33% Similarity=0.352 Sum_probs=25.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH----cCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARK----SGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~----l~~~~~~i~~ 433 (644)
..++|+|+||+|||+||..+|.. .+.++++++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 35899999999999999887643 2666766653
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.08 E-value=0.00025 Score=67.57 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=27.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHH-cCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARK-SGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~-l~~~~~~i 431 (644)
..|+|+|+||||||++++.|+.. +|.+++.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 46999999999999999999999 68776643
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.08 E-value=0.00032 Score=65.56 Aligned_cols=29 Identities=34% Similarity=0.756 Sum_probs=25.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYA 429 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~ 429 (644)
..++|+|||||||||+++.|+..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35999999999999999999999987554
No 155
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00034 Score=66.44 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
..|+|.|+||+||||+++.|+..+|.+++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 468999999999999999999999877665
No 156
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.06 E-value=0.00026 Score=65.65 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=25.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|+||||+||||+++.| ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4899999999999999999 8888887654
No 157
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.05 E-value=0.0012 Score=74.39 Aligned_cols=31 Identities=35% Similarity=0.648 Sum_probs=25.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i 431 (644)
+.++|+||||||||+++..++..+ +.+++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 469999999999999999998765 5555544
No 158
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.03 E-value=0.00031 Score=65.50 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=26.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
..|+|+|+||+|||++++.|+..+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 359999999999999999999999987664
No 159
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00032 Score=66.75 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|.|+|||||||+++.|++.+|.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999876644
No 160
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00031 Score=66.68 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
..|+|.|+|||||||+++.|++.+|.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999877654
No 161
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.01 E-value=0.00026 Score=67.31 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=29.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~ 435 (644)
..++|.||||+||||+++.|+..++...+.+++.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 45899999999999999999998777777776543
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.99 E-value=0.0052 Score=60.34 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=25.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
..++|+||||+|||+++..++... +.++++++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 358999999999999998886653 555555553
No 163
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.99 E-value=0.00036 Score=68.26 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=27.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+..|+|.|+||+||||+++.|++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35699999999999999999999999876654
No 164
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.99 E-value=0.0057 Score=62.98 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=29.4
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGD 435 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~ 435 (644)
++..++|+||+|+||||++..||..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 44679999999999999999998765 55677666544
No 165
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.98 E-value=0.00039 Score=66.84 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=27.5
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+..|+|.|+|||||||+++.|++.+|.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35689999999999999999999998766543
No 166
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.97 E-value=0.00045 Score=66.50 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=26.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
+..|+|+||||+||||+++.|+..+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3569999999999999999999999866554
No 167
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.97 E-value=0.00083 Score=71.16 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=40.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC----CCeEEEeC-CCCCC-----------CchhHHHHHHHHHHHHHhcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG----LDYALMTG-GDVAP-----------LGPQAVTKIHQLFDWAKKSKRGLLLF 464 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~----~~~~~i~~-~~l~~-----------~g~~~~~~l~~~f~~a~~~~~~~VL~ 464 (644)
..++|.||+|+||||+.++++..+. ..++.+.. .++.. .+... ..+...+..+...+ |.||+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~-~~~~~~La~aL~~~-Pdvil 201 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDT-LGFSEALRSALRED-PDIIL 201 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-SCHHHHHHHHTTSC-CSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecccc-CCHHHHHHHHhhhC-cCEEe
Confidence 4599999999999999999988763 23332211 11100 11111 12233455555555 88999
Q ss_pred Eeccc
Q 006458 465 IDEAD 469 (644)
Q Consensus 465 IDEid 469 (644)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99995
No 168
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.96 E-value=0.0034 Score=67.49 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=26.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---------CCCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---------~~~~~~i~~~~ 435 (644)
..++|+||||+|||+|++.|+-.. +...+++++..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 358999999999999999876443 23467777654
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.00047 Score=69.40 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=27.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
.++|.||||||||++++.||..++.+++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999987765543
No 170
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00039 Score=65.51 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=22.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYA 429 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~ 429 (644)
..|+|.|+||+||||+++.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999998877
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.94 E-value=0.00043 Score=67.36 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=26.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|+||||+||||+++.|+..+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998877655
No 172
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.93 E-value=0.00046 Score=65.23 Aligned_cols=29 Identities=38% Similarity=0.705 Sum_probs=25.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.|+|.|||||||||+++.|++.+|.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 58999999999999999999999876654
No 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.92 E-value=0.0086 Score=71.13 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=33.7
Q ss_pred cccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHH
Q 006458 373 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 373 vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.||.+.....|...+... .+.+.+.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 388888888887655321 12457999999999999999999853
No 174
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00047 Score=64.01 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|+|+||+||||+++.|++.+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999877653
No 175
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.91 E-value=0.00038 Score=65.17 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=23.8
Q ss_pred ccEEEecCCCCChHHHHHHHHH-HcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELAR-KSGLDYA 429 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~-~l~~~~~ 429 (644)
..|+|.||||+||||+++.|+. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 3589999999999999999999 4554443
No 176
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.90 E-value=0.00072 Score=68.45 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=41.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC---CeEEEeCCCCCCCc-------hh-----HHHHHHHHHHHHHhcCCCeEEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL---DYALMTGGDVAPLG-------PQ-----AVTKIHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~---~~~~i~~~~l~~~g-------~~-----~~~~l~~~f~~a~~~~~~~VL~I 465 (644)
..++|+||+|+||||+++.|+..+.. --+.+.+.++..+. .. ....+...+..+...+ |.+|++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~-p~illl 104 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED-PDVIFV 104 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHC-CSEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhC-CCEEEe
Confidence 46899999999999999999887531 12333332221110 00 0012344444555554 789999
Q ss_pred eccc
Q 006458 466 DEAD 469 (644)
Q Consensus 466 DEid 469 (644)
||.-
T Consensus 105 DEp~ 108 (261)
T 2eyu_A 105 GEMR 108 (261)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9994
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.00043 Score=66.03 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=26.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|.|+||+||||+++.|++.+|.+++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4599999999999999999999998666543
No 178
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.90 E-value=0.002 Score=80.31 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=51.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH---cCCCeEEEeCCCCCC------Cc----------hhHHHHHHHHHHHHHhcCCCe
Q 006458 401 RNMLFYGPPGTGKTMAARELARK---SGLDYALMTGGDVAP------LG----------PQAVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~---l~~~~~~i~~~~l~~------~g----------~~~~~~l~~~f~~a~~~~~~~ 461 (644)
..++|+||||||||+||..++.. .|..+++++...... ++ ......+..++........++
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~~ 114 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 114 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCCC
Confidence 57999999999999999999765 367788887655322 00 011334455555554445588
Q ss_pred EEEEeccchhhhc
Q 006458 462 LLFIDEADAFLCE 474 (644)
Q Consensus 462 VL~IDEid~l~~~ 474 (644)
+|+||.+..+...
T Consensus 115 LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 115 VIVVDSVAALTPK 127 (1706)
T ss_dssp EEEESCSTTCCCH
T ss_pred EEEEcchhhhccc
Confidence 9999999998764
No 179
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.90 E-value=0.00048 Score=66.95 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|.||||+||||+++.|+..+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 388999999999999999999999877654
No 180
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.90 E-value=0.003 Score=62.72 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=26.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
+++++||+|+|||.++..++..++..++++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4999999999999999999888876666554
No 181
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.89 E-value=0.0005 Score=67.97 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|.|+|||||||+++.|++.++.+++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999776654
No 182
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.89 E-value=0.00064 Score=63.69 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=27.8
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l 436 (644)
...++|+||||+||||+++.|+..+|..+ +++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 34699999999999999999999887554 444443
No 183
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.88 E-value=0.00039 Score=65.80 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..|+|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.87 E-value=0.00056 Score=67.35 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.8
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
++.|+|.||||+||+|.|+.|++.+|.+.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3568899999999999999999999876553
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.87 E-value=0.0004 Score=67.91 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=27.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|.|+||+||||+++.|+..+|.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999877654
No 186
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.87 E-value=0.0033 Score=68.27 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=29.9
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 435 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~ 435 (644)
++..|+|+|+||+||||++..||..+ |..+..+++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 44689999999999999999998876 56677666543
No 187
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.87 E-value=0.00046 Score=65.31 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=27.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|.|+|||||||+++.|+..+|.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999998766543
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.87 E-value=0.00072 Score=63.73 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=29.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
..+.|.|++|+||||+++.|+..+ |.+++.+++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 468899999999999999999988 888887764
No 189
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.85 E-value=0.0047 Score=62.62 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..++|+||||+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998654
No 190
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.85 E-value=0.00049 Score=67.65 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=27.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|+|.||||+||||+++.|++.+|.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4699999999999999999999998776643
No 191
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.84 E-value=0.002 Score=66.92 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..++|+||||+|||+++..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 192
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.84 E-value=0.00054 Score=68.42 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
++..|+|+||||+||||+++.|++.+|.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345799999999999999999999998776654
No 193
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.84 E-value=0.0019 Score=62.21 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=41.4
Q ss_pred ccEEEecCCCCChH-HHHHHHHHHc--CCCeEEEeCCCCCCCchhHH------------HHHHHHHHHHHhcCCCeEEEE
Q 006458 401 RNMLFYGPPGTGKT-MAARELARKS--GLDYALMTGGDVAPLGPQAV------------TKIHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 401 ~~iLL~GppGtGKT-~lAkaLA~~l--~~~~~~i~~~~l~~~g~~~~------------~~l~~~f~~a~~~~~~~VL~I 465 (644)
.-.++|||.|+||| +|.+++.+.. +..+++++..--..++.... ....+++... .+.++|+|
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~---~~~DvIlI 97 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA---LGVAVIGI 97 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH---HTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc---cCCCEEEE
Confidence 34888999999999 8888887654 67777776331101111111 1112233322 23679999
Q ss_pred eccchh
Q 006458 466 DEADAF 471 (644)
Q Consensus 466 DEid~l 471 (644)
||+.-|
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999986
No 194
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.014 Score=54.98 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
+...++|.|+||+||||+++.|+..+ |.++..+++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 33568999999999999999999887 444555543
No 195
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.83 E-value=0.00068 Score=66.17 Aligned_cols=29 Identities=38% Similarity=0.715 Sum_probs=25.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.|+|.||||+||+|.|+.|++.+|.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 37899999999999999999999877654
No 196
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.0018 Score=61.47 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=26.8
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
|.|.|++||||||+++.|++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 988876543
No 197
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.78 E-value=0.00071 Score=66.21 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=26.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
..|+|.||||+||||+++.|++.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 469999999999999999999999976554
No 198
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.77 E-value=0.033 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|+||+|||+|+..|...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999998653
No 199
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.76 E-value=0.0043 Score=67.77 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=26.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~ 433 (644)
.-++|.|+||+|||+|+..++..+ |.++++++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 358999999999999999987754 557777764
No 200
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.73 E-value=0.001 Score=64.12 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=27.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l 436 (644)
...+.|.||||+||||+++.|+..+|. +.+++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 356999999999999999999999865 44455443
No 201
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.73 E-value=0.00073 Score=65.79 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=27.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|.||||+||||+++.|++.+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999999877665
No 202
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.70 E-value=0.0012 Score=62.57 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=27.6
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~ 432 (644)
.|.|.|+|||||||+++.|++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 38899999999999999999998 88887765
No 203
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.70 E-value=0.0059 Score=62.39 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~ 432 (644)
..++|.||||+|||+|++.|+..+ |.++++++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999998765 44565554
No 204
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.69 E-value=0.0026 Score=61.22 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=40.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC--------CC-CCchh----HHHHHHHHHHHHHhcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD--------VA-PLGPQ----AVTKIHQLFDWAKKSKRGLLLF 464 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~--------l~-~~g~~----~~~~l~~~f~~a~~~~~~~VL~ 464 (644)
.-.+++||+|+|||+.+-.++..+ |..++.+...- +. ..|.. ......+++..+. ..+.+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~--~~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE--EDTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC--TTCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh--ccCCEEE
Confidence 348899999999999888887775 66666553110 00 01100 0011123443332 2368999
Q ss_pred Eeccchh
Q 006458 465 IDEADAF 471 (644)
Q Consensus 465 IDEid~l 471 (644)
|||+..|
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999885
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.64 E-value=0.001 Score=64.18 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD 427 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~ 427 (644)
..|+|.|+|||||||+++.|++.++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 469999999999999999999987543
No 206
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.63 E-value=0.0015 Score=62.95 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 435 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~ 435 (644)
+...+.|.||+|+||||+++.|+..+ |...+.+++.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 34569999999999999999999988 54444555433
No 207
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.61 E-value=0.016 Score=60.32 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=28.4
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
.++..++|+||+|+||||++..||..+ |..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345679999999999999999998775 555655554
No 208
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.59 E-value=0.0012 Score=63.70 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..|+|.|+|||||||+++.|++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999874
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.57 E-value=0.0014 Score=63.98 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.+.|.|||||||||+++.|+..+|.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 58999999999999999999999876553
No 210
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.56 E-value=0.0012 Score=62.93 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=25.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.|.|.|+|||||||+++.|++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 38999999999999999999999986653
No 211
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.56 E-value=0.0013 Score=64.56 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=26.2
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|.||||+||||+++.|+..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 389999999999999999999998766544
No 212
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.55 E-value=0.0015 Score=62.63 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc-CCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS-GLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l-~~~~~~i~ 432 (644)
..|.|.|+||+||||+++.|++.+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 458999999999999999999998 57776654
No 213
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.54 E-value=0.00083 Score=63.48 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=25.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC---CCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG---LDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~---~~~~~i~ 432 (644)
.|+|.|||||||||+++.|++.++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 489999999999999999999875 3355554
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.53 E-value=0.001 Score=63.89 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
.|.|+||+|+||||+++.|+. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 489999999999999999999 887766543
No 215
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0013 Score=68.47 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=28.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
..++|+||||||||++++.||+.++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 469999999999999999999999877776643
No 216
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.51 E-value=0.02 Score=64.80 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
+..|+|+|+||+||||+++.|++.+ |.+++.+++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 3569999999999999999999999 999888864
No 217
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.47 E-value=0.0089 Score=61.96 Aligned_cols=33 Identities=24% Similarity=0.141 Sum_probs=26.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
.-++|.|+||+|||+|+..+|... |.++++++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 358999999999999999998664 456666653
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.44 E-value=0.009 Score=64.99 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=26.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~ 433 (644)
.-++|+|+||+|||+|+..+|... |.++++++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 358999999999999999987653 567777664
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.44 E-value=0.0081 Score=66.37 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC---------------------CchhHHHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP---------------------LGPQAVTKIHQLFDWA 454 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~---------------------~g~~~~~~l~~~f~~a 454 (644)
++..|+|+|+||+||||++..||..+ |..+..+++..+.+ .+.+....+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999776 67777776643221 1111112223334444
Q ss_pred HhcCCCeEEEEeccchh
Q 006458 455 KKSKRGLLLFIDEADAF 471 (644)
Q Consensus 455 ~~~~~~~VL~IDEid~l 471 (644)
.. ..+.++|||-...+
T Consensus 180 ~~-~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KN-ENFEIIIVDTSGRH 195 (504)
T ss_dssp HH-TTCCEEEEEECCCC
T ss_pred HH-CCCcEEEEeCCCCc
Confidence 32 34789999988764
No 220
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.44 E-value=0.014 Score=57.77 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358899999999999999998765
No 221
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.43 E-value=0.0023 Score=61.39 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD 427 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~ 427 (644)
..|+|.|+|||||||+++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458999999999999999999998763
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.43 E-value=0.035 Score=60.12 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=48.1
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeCCCCCCCc---------------------hhHHHHHHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPLG---------------------PQAVTKIHQLFD 452 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~~~l~~~g---------------------~~~~~~l~~~f~ 452 (644)
.+++.|+|+|++|+||||++-.||..+ |..+..+++....+.. .+....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356789999999999999999998765 7788888776543211 011122233444
Q ss_pred HHHhcCCCeEEEEeccchh
Q 006458 453 WAKKSKRGLLLFIDEADAF 471 (644)
Q Consensus 453 ~a~~~~~~~VL~IDEid~l 471 (644)
.+.. ..++++|||-...+
T Consensus 178 ~~~~-~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKL-KFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHH-TTCSEEEEECCCCC
T ss_pred HHHh-CCCCEEEEECCCcc
Confidence 4442 33789999987653
No 223
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.41 E-value=0.015 Score=60.04 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|+||+|+|||||++.|+..+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 458999999999999999998876
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.40 E-value=0.0054 Score=64.14 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=43.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC--CCeEEEeCCCCCC---------CchhHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAP---------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEAD 469 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~--~~~~~i~~~~l~~---------~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid 469 (644)
..++|.||+|+||||+++.|+..+. ...+.+++..... +..+........+..+...+ |.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~-p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR-PDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSC-CSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhC-CCEEEEcCCC
Confidence 3599999999999999999998874 2345554432110 00001123334444555444 7899999986
Q ss_pred h
Q 006458 470 A 470 (644)
Q Consensus 470 ~ 470 (644)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 4
No 225
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.40 E-value=0.0022 Score=63.84 Aligned_cols=30 Identities=30% Similarity=0.617 Sum_probs=26.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYA 429 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~ 429 (644)
+..+.|.||||+||||+++.|++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356999999999999999999999987544
No 226
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.39 E-value=0.0017 Score=62.58 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=24.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.+.|.||+|+||||+++.|+. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 488999999999999999998 7877653
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.38 E-value=0.0021 Score=63.88 Aligned_cols=30 Identities=40% Similarity=0.536 Sum_probs=26.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
..+.|.||||+|||++++.|+..+|.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999876643
No 228
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.38 E-value=0.0021 Score=61.67 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=26.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|.|.|++|+|||++++.|+..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 589999999999999999999999777654
No 229
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.38 E-value=0.0017 Score=64.99 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=30.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCe--------EEEeCCCCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDY--------ALMTGGDVAP 438 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~--------~~i~~~~l~~ 438 (644)
..|.|.|+|||||||+++.|+..+|.++ +.++.+++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4699999999999999999999998763 3566666543
No 230
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.36 E-value=0.0068 Score=62.61 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=27.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~ 432 (644)
..++|.||+|||||+|+..||+.++..++..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 45889999999999999999999886655543
No 231
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.35 E-value=0.029 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||++.|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 232
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.32 E-value=0.0094 Score=64.33 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCCCC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 436 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~l 436 (644)
+.-|+|+|+||+||||+++.|+..++.. .++...+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~--~i~~D~~ 292 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL 292 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCE--ECCGGGS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcE--EEccchH
Confidence 3568999999999999999999988754 4454444
No 233
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.30 E-value=0.025 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998765
No 234
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0022 Score=64.43 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=27.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|.|.||||+||||+++.|+..+|.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 3599999999999999999999999887754
No 235
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.30 E-value=0.017 Score=64.13 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=26.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~ 432 (644)
..|+|+|+||+|||++++.|++.+ +.+...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 458999999999999999999988 44554454
No 236
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.30 E-value=0.0031 Score=67.13 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=41.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC----CCeEEEeCCCCCC-------Cchh-----HHHHHHHHHHHHHhcCCCeE
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG----LDYALMTGGDVAP-------LGPQ-----AVTKIHQLFDWAKKSKRGLL 462 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~----~~~~~i~~~~l~~-------~g~~-----~~~~l~~~f~~a~~~~~~~V 462 (644)
+...++|+||+|+||||+++.|+..+. ..++.+.. .+.. +... ....+...+..+...+ |.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~-pd~ 212 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED-PDV 212 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC-CSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhC-cCE
Confidence 334699999999999999999998763 22323221 1110 0000 0112233444455554 889
Q ss_pred EEEeccc
Q 006458 463 LFIDEAD 469 (644)
Q Consensus 463 L~IDEid 469 (644)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999994
No 237
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.002 Score=62.12 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=27.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|.|+|++||||||+++.|+..+|.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3588999999999999999999989877654
No 238
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.021 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+...|+|+|++|+|||+|+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 239
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=0.032 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 240
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.27 E-value=0.0076 Score=58.92 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=24.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~ 432 (644)
-.+++||.|+|||+.+-.++..+ |..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36789999999999888887665 67776665
No 241
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.24 E-value=0.0026 Score=61.38 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.4
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
.+...++|+||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3445699999999999999999999875
No 242
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.24 E-value=0.0076 Score=63.19 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
.-++|.|+||+|||+|+..+|..+ |.++.+++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 358999999999999999998764 667766654
No 243
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.22 E-value=0.023 Score=60.04 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48899999999999999998765
No 244
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.22 E-value=0.012 Score=59.17 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.3
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
...|+|.|++|+|||+|+.+|...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999764
No 245
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.20 E-value=0.0059 Score=69.27 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 459999999999999988876554
No 246
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.20 E-value=0.0024 Score=60.95 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=25.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
..|.|.|++||||||+++.|++. |.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 46999999999999999999998 766654
No 247
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.15 E-value=0.0034 Score=62.89 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=26.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYA 429 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~ 429 (644)
..|.|.||+|+||||+++.|++.+|..++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45899999999999999999999997665
No 248
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.14 E-value=0.0099 Score=58.00 Aligned_cols=126 Identities=19% Similarity=0.133 Sum_probs=66.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeCC--CCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe---ccchh-hhc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGG--DVAPLGPQAVTKIHQLFDWAKKSKRGLLLFID---EADAF-LCE 474 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~--~l~~~g~~~~~~l~~~f~~a~~~~~~~VL~ID---Eid~l-~~~ 474 (644)
-.|-|+|..|||||++++.|+. +|.+++..+.- .+...++.....+...|-.. + ++ .+|+- ++.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~-------~--~~~dg~ldR~~L~~ 79 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPA-------F--VAADGSLDRARMRA 79 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGG-------G--BCTTSSBCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChh-------h--cCCCCCCcHHHHHH
Confidence 3588999999999999999998 89888765421 12223333334444433211 1 12 22220 000
Q ss_pred cccCcCCHHHHH---------HHHHHHHHhCCCCCCEEEEEEeCCCCCCC-HHHhcccceeEecCCCCHHHHHHHHH
Q 006458 475 RNKTYMSEAQRS---------ALNALLFRTGDQSKDIVLALATNRPGDLD-SAVADRIDEVLEFPLPGQEERFKLLK 541 (644)
Q Consensus 475 r~~~~~~~~~~~---------~l~~lL~~~~~~~~~viiI~ttN~~~~ld-~al~~Rfd~~i~~~~p~~~er~~Il~ 541 (644)
.-. .++.... +...+...+......++|+= .|-.+. ..+...||.+|.+..|....+.++..
T Consensus 80 ~vF--~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d---~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~ 151 (210)
T 4i1u_A 80 LIF--SDEDARRRLEAITHPLIRAETEREARDAQGPYVIFV---VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQ 151 (210)
T ss_dssp HHH--HCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE---CTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHH
T ss_pred HHh--CCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEE---EecccccCCccccCCeEEEEECCHHHHHHHHHh
Confidence 000 0111222 22233333333334443332 244455 67777899999999887666666554
No 249
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.12 E-value=0.0023 Score=66.97 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=28.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~ 433 (644)
+.|+|.||+|||||+|+..||+.++..++..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 469999999999999999999999876665543
No 250
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.10 E-value=0.021 Score=56.42 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=37.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCCCchhHHH------------HHHHHHHHHHhcCCCeEEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVT------------KIHQLFDWAKKSKRGLLLFID 466 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~~g~~~~~------------~l~~~f~~a~~~~~~~VL~ID 466 (644)
-.++|||.|+|||+.+-.++..+ |..++.+...--..++....+ ...+++..+ .++.+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~---~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA---LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHH---TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHh---ccCCEEEEE
Confidence 47889999999997666555443 566665542111111100000 012233333 347899999
Q ss_pred ccchh
Q 006458 467 EADAF 471 (644)
Q Consensus 467 Eid~l 471 (644)
|+..+
T Consensus 98 EaQF~ 102 (234)
T 2orv_A 98 EGQFF 102 (234)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99986
No 251
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.10 E-value=0.013 Score=60.21 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=45.3
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCCCCCC---------------------CchhHHHHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP---------------------LGPQAVTKIHQLFDWAK 455 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~~l~~---------------------~g~~~~~~l~~~f~~a~ 455 (644)
+..++|.|++|+|||+++..||..+ |..+..+++....+ .+......+...+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568889999999999999998776 66677666543221 01111222234444443
Q ss_pred hcCCCeEEEEeccchh
Q 006458 456 KSKRGLLLFIDEADAF 471 (644)
Q Consensus 456 ~~~~~~VL~IDEid~l 471 (644)
. ..++++|||-...+
T Consensus 178 ~-~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 S-EKMEIIIVDTAGRH 192 (297)
T ss_dssp H-TTCSEEEEECCCSC
T ss_pred h-CCCCEEEEeCCCCc
Confidence 2 34789999987664
No 252
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.04 E-value=0.015 Score=59.07 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||++.|+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998765
No 253
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.03 E-value=0.015 Score=56.03 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.2
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
...|+|+|++|+|||+|+..|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998764
No 254
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.02 E-value=0.021 Score=61.64 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=51.5
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHcCCC--eEEEeCCCCCC-------
Q 006458 368 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAP------- 438 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l~~~--~~~i~~~~l~~------- 438 (644)
..++++-..+.....+..++ . .+...++|+||+|+||||+.++|+..+..+ -+.+.+..+..
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~------~---~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q 214 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLI------K---RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQ 214 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHH------T---SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEE
T ss_pred CCHHHcCCCHHHHHHHHHHH------H---hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcce
Confidence 35666655555555554441 1 122458999999999999999999987532 22232222211
Q ss_pred --CchhHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 006458 439 --LGPQAVTKIHQLFDWAKKSKRGLLLFIDEAD 469 (644)
Q Consensus 439 --~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid 469 (644)
+.....-.....+..+.+.. |.++++.|+-
T Consensus 215 ~~v~~~~g~~f~~~lr~~Lrq~-pd~i~vgEiR 246 (418)
T 1p9r_A 215 TQVNPRVDMTFARGLRAILRQD-PDVVMVGEIR 246 (418)
T ss_dssp EECBGGGTBCHHHHHHHHGGGC-CSEEEESCCC
T ss_pred EEEccccCcCHHHHHHHHhccC-CCeEEEcCcC
Confidence 11111111223333444455 7899999864
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.02 E-value=0.06 Score=55.19 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
++..+.|+|++|+||||++..||..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34568889999999999999998775 455555544
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.01 E-value=0.0043 Score=60.11 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=22.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|+||+|+||||+++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999875
No 257
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.01 E-value=0.0042 Score=60.31 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=27.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..+.|+|++|||||++++.|+..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3589999999999999999999999776543
No 258
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.01 E-value=0.0084 Score=62.04 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.|+|.||+|||||+++..||..++..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 48899999999999999999988754443
No 259
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.00 E-value=0.034 Score=61.81 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=58.6
Q ss_pred ccEEEecCCCCChHHHHHHH--HHHc--CCCeEEEeCCCCC----------CCch-------------------------
Q 006458 401 RNMLFYGPPGTGKTMAAREL--ARKS--GLDYALMTGGDVA----------PLGP------------------------- 441 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaL--A~~l--~~~~~~i~~~~l~----------~~g~------------------------- 441 (644)
..++|+||+|+|||+|++.+ +... +...+++++.+.. .+..
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~ 119 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVG 119 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhc
Confidence 45899999999999999994 3332 3445555543310 0000
Q ss_pred --hHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006458 442 --QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDL 514 (644)
Q Consensus 442 --~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~l 514 (644)
+....+.......... .+.+|+||+.-.+.+. ...+...+..+..++..+.. .++.+|++|...+.+
T Consensus 120 ~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~---~~lD~~~~~~l~~ll~~l~~--~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 120 GFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQ---YDASSVVRRELFRLVARLKQ--IGATTVMTTERIEEY 188 (525)
T ss_dssp SHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTT---TCCHHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSS
T ss_pred ccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHh---cCCHHHHHHHHHHHHHHHHH--CCCEEEEEecCCCCc
Confidence 0011122222223222 3679999999876443 11223455566666666633 245566666655543
No 260
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.99 E-value=0.0045 Score=61.12 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=27.0
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
...|.|.|++|+|||++++.|+..+|.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3468999999999999999999999976654
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.97 E-value=0.0099 Score=57.13 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=27.3
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
+..+.|.||+|+||||+++.|+..+ +.+++.++.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 3568999999999999999999876 566665543
No 262
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.96 E-value=0.038 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+++++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 45999999999999866554433
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.95 E-value=0.0046 Score=58.59 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGL 426 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~ 426 (644)
.++|.||||+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986543
No 264
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.94 E-value=0.025 Score=67.03 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=51.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHH-----cCCCe----EEE----------eCCCC-CCCchhHHHHHHHHHHHHHhcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARK-----SGLDY----ALM----------TGGDV-APLGPQAVTKIHQLFDWAKKSKRG 460 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~-----l~~~~----~~i----------~~~~l-~~~g~~~~~~l~~~f~~a~~~~~~ 460 (644)
..++|+||+|+||||+.+.++-. .|..+ ..+ ...+. .............+...+.....|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 35899999999999999998532 23211 111 11110 000011122233333334334568
Q ss_pred eEEEEeccchhhhccccCcCCHHH-HHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQ-RSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~-~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
.+|+|||...= .+... ..+...++..+... .+..+|++|...
T Consensus 743 sLlLLDEp~~G--------lD~~~~~~i~~~il~~l~~~-~g~~vl~aTH~~ 785 (934)
T 3thx_A 743 SLIIIDELGRG--------TSTYDGFGLAWAISEYIATK-IGAFCMFATHFH 785 (934)
T ss_dssp CEEEEESCSCS--------SCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCG
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcH
Confidence 99999999752 12222 23335555555322 234556677653
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.94 E-value=0.0042 Score=60.38 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|.|.|++|+||||+++.|+. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3589999999999999999998 78766543
No 266
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.93 E-value=0.017 Score=56.94 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56999999999999999999764
No 267
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.92 E-value=0.0043 Score=60.14 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=28.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC----CCeEEEeCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG----LDYALMTGG 434 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~----~~~~~i~~~ 434 (644)
..++|.|+||+||||+++.|+..++ .+++.+++.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 4689999999999999999998764 567777643
No 268
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.91 E-value=0.016 Score=58.44 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
....|+|.|++|+|||+|+..|...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999754
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.91 E-value=0.0057 Score=58.59 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGL 426 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~ 426 (644)
.|+|+||+|+|||+|++.|......
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3999999999999999999887643
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.89 E-value=0.0051 Score=59.48 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.4
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
+...+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334688999999999999999999875
No 271
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.89 E-value=0.003 Score=60.84 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc-CCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS-GLDYA 429 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l-~~~~~ 429 (644)
..+.|.||||+||||+++.|+..+ +..++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 468899999999999999999987 54443
No 272
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.88 E-value=0.034 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..+++.|++|+|||+|+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999865
No 273
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.86 E-value=0.0047 Score=65.04 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=27.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.+++|+||||+|||++++.||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 479999999999999999999999887744
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.005 Score=58.19 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|+||+|+|||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3589999999999999999998764
No 275
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.85 E-value=0.012 Score=62.84 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+.|+|.||+|+|||+|+..||..++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 4588999999999999999999987655443
No 276
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.84 E-value=0.024 Score=61.76 Aligned_cols=33 Identities=24% Similarity=0.141 Sum_probs=26.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
.-++|.|+||+|||+|+..+|... |.++++++.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 358999999999999999987765 667777654
No 277
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.84 E-value=0.026 Score=62.26 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=26.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc----CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l----~~~~~~i~~ 433 (644)
.-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 358999999999999999998765 456777664
No 278
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.84 E-value=0.024 Score=63.05 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=25.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
..++|+||||+|||+|++.++... |.+++++.+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 358899999999999999998764 444555543
No 279
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.81 E-value=0.043 Score=53.94 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=17.0
Q ss_pred ccEEEecCCCCChHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELA 421 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA 421 (644)
..+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 459999999999998666543
No 280
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.81 E-value=0.02 Score=60.93 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48899999999999999999875
No 281
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.81 E-value=0.016 Score=58.72 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||++.|+..+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999998765
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.80 E-value=0.076 Score=57.32 Aligned_cols=36 Identities=28% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeCC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 434 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~~ 434 (644)
++..++|+||+|+||||++..||..+ |..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45678899999999999999999876 5566666553
No 283
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.80 E-value=0.0046 Score=59.11 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=22.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|+||||+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999876
No 284
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.79 E-value=0.0045 Score=63.13 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=25.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
..|.|+|+|||||||+++.|+ .+|.+++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 469999999999999999999 578766543
No 285
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.77 E-value=0.023 Score=62.26 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..|+|+|.||+|||++++.|+..++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999999875
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.77 E-value=0.025 Score=59.03 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
++..+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999876
No 287
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.76 E-value=0.0047 Score=63.15 Aligned_cols=29 Identities=38% Similarity=0.561 Sum_probs=24.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc-CCCeE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS-GLDYA 429 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l-~~~~~ 429 (644)
..|+|.|+||+||||+++.|+..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358999999999999999999974 54444
No 288
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.74 E-value=0.03 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=19.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+++++++|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999988777654
No 289
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.74 E-value=0.0059 Score=58.84 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.4
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
...+.|.||+|+||||+++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999887
No 290
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.73 E-value=0.015 Score=56.26 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=14.4
Q ss_pred ccEEEecCCCCChHHH
Q 006458 401 RNMLFYGPPGTGKTMA 416 (644)
Q Consensus 401 ~~iLL~GppGtGKT~l 416 (644)
+++++.+|+|+|||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 4699999999999986
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.73 E-value=0.0052 Score=64.41 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.|+|.||+|+|||++++.||..++..++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 589999999999999999999998544443
No 292
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.71 E-value=0.026 Score=59.55 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999775
No 293
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.70 E-value=0.03 Score=59.19 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48899999999999999999875
No 294
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.69 E-value=0.04 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
++..++|+||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44579999999999999999999876
No 295
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.69 E-value=0.036 Score=58.36 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=27.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
...|.|+|+||+|||+++..|+..+ |..+..+++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 3569999999999999999998875 555555543
No 296
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.68 E-value=0.026 Score=66.69 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=53.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHH-----cCCC----eEEE----------eCCCCCCCc-hhHHHHHHHHHHHHHhcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARK-----SGLD----YALM----------TGGDVAPLG-PQAVTKIHQLFDWAKKSKRG 460 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~-----l~~~----~~~i----------~~~~l~~~g-~~~~~~l~~~f~~a~~~~~~ 460 (644)
..++|+||+|+||||+.+.++.. .|.. ...+ ...+....+ ......+..+...+....+|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 45899999999999999998743 2321 1111 111110000 11112233333334445668
Q ss_pred eEEEEeccchhhhccccCcCCHHH-HHHHHHHHHHhCCCCCCEEEEEEeCCCC
Q 006458 461 LLLFIDEADAFLCERNKTYMSEAQ-RSALNALLFRTGDQSKDIVLALATNRPG 512 (644)
Q Consensus 461 ~VL~IDEid~l~~~r~~~~~~~~~-~~~l~~lL~~~~~~~~~viiI~ttN~~~ 512 (644)
.+|+|||...= .+... ..+...++..+... .++.+|++|...+
T Consensus 754 ~LlLLDEP~~G--------lD~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~e 797 (918)
T 3thx_B 754 SLVILDELGRG--------TSTHDGIAIAYATLEYFIRD-VKSLTLFVTHYPP 797 (918)
T ss_dssp CEEEEESTTTT--------SCHHHHHHHHHHHHHHHHHT-TCCEEEEECSCGG
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcHH
Confidence 99999999762 12222 23334555554221 2456666776644
No 297
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.67 E-value=0.03 Score=59.26 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999875
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.66 E-value=0.0066 Score=57.99 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|.||+|+||||+++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999999863
No 299
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.66 E-value=0.039 Score=56.83 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
++..+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999876
No 300
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.63 E-value=0.042 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.9
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.++|.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 301
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.62 E-value=0.019 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
-.|+|.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999764
No 302
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.61 E-value=0.0087 Score=66.34 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=42.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC--CCeEEEeCCC-CCCCc------------hhHHHHHHHHHHHHHhcCCCeEEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGD-VAPLG------------PQAVTKIHQLFDWAKKSKRGLLLFI 465 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~--~~~~~i~~~~-l~~~g------------~~~~~~l~~~f~~a~~~~~~~VL~I 465 (644)
.+++|.||+|+||||++++|+..+. ...+.+.+.. +...+ ......+...+..+.+.+ |+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~-PD~iiv 339 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQR-PDYIIV 339 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGC-CSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccC-CCeEEe
Confidence 3599999999999999999998874 3355554433 21000 000012333444455555 789999
Q ss_pred eccc
Q 006458 466 DEAD 469 (644)
Q Consensus 466 DEid 469 (644)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9985
No 303
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.60 E-value=0.081 Score=59.61 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|+||+|+||||+++.|+..+
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 458999999999999999998876
No 304
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.59 E-value=0.0075 Score=58.35 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=27.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.|.|.||+|||||++++.||+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999873
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.58 E-value=0.0069 Score=57.46 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998764
No 306
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0067 Score=58.36 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=22.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|+||+|+|||||++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4599999999999999999998763
No 307
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.54 E-value=0.025 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.2
Q ss_pred ccEEEecCCCCChHHHH-HHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAA-RELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lA-kaLA~~ 423 (644)
+++++.+|+|+|||..+ ..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 45999999999999864 333443
No 308
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.52 E-value=0.013 Score=61.91 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=41.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC--CCeEEEeCCC-CC-----C---Cch--h------HHHHHHHHHHHHHhcCCCe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGD-VA-----P---LGP--Q------AVTKIHQLFDWAKKSKRGL 461 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~--~~~~~i~~~~-l~-----~---~g~--~------~~~~l~~~f~~a~~~~~~~ 461 (644)
..++|.||+|+||||++++|+..+. ...+.+.+.. +. . +.. . ....+...+..+.+.. |.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~-pd 254 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK-PT 254 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC-CS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC-CC
Confidence 3599999999999999999999874 2344444321 10 0 000 0 1112334444454444 67
Q ss_pred EEEEeccch
Q 006458 462 LLFIDEADA 470 (644)
Q Consensus 462 VL~IDEid~ 470 (644)
++++||+..
T Consensus 255 ~~l~~e~r~ 263 (361)
T 2gza_A 255 RILLAELRG 263 (361)
T ss_dssp EEEESCCCS
T ss_pred EEEEcCchH
Confidence 899999864
No 309
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.45 E-value=0.017 Score=56.95 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.2
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||...-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 369999999999998643
No 310
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.45 E-value=0.016 Score=55.19 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=28.0
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCeEEEeCCC
Q 006458 403 MLFYGPPGTGKTMAARELARKSGLDYALMTGGD 435 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~~~~~~i~~~~ 435 (644)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 88887776644
No 311
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.41 E-value=0.048 Score=58.28 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.1
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|+||+|+|||+|.++|+-.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999995544
No 312
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.41 E-value=0.052 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.++|+||||+|||+|+..|+...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999987664
No 313
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.39 E-value=0.11 Score=58.29 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+||||+++.|+..+
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998875
No 314
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.38 E-value=0.022 Score=54.24 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=15.1
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 469999999999997544
No 315
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.35 E-value=0.066 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
...|.|.|+||+|||+|...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999754
No 316
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.34 E-value=0.067 Score=52.23 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.2
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||...-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 469999999999998543
No 317
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.32 E-value=0.027 Score=64.23 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=25.1
Q ss_pred cChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHH
Q 006458 375 LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 375 g~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+++..+..|...+.. .+ -.|++||||||||+++-.+...
T Consensus 190 LN~~Q~~AV~~al~~--------~~--~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ--------KE--LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp CCHHHHHHHHHHHHC--------SS--EEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC--------CC--ceEEECCCCCCHHHHHHHHHHH
Confidence 456666666554321 11 3799999999999866555444
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.29 E-value=0.011 Score=57.05 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=22.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
+-+.|.||+|+|||+|++.|+..+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998865
No 319
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.27 E-value=0.054 Score=60.91 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|+||+|+||||+++.|+..+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 458999999999999999998876
No 320
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.23 E-value=0.044 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 321
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.22 E-value=0.0079 Score=58.13 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..++|.||||+|||+++..|+...+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999998865
No 322
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.20 E-value=0.18 Score=47.01 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=20.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
...|+|.|++|+|||+|+..|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999753
No 323
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.19 E-value=0.057 Score=53.02 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.8
Q ss_pred ccEEEecCCCCChHHHH
Q 006458 401 RNMLFYGPPGTGKTMAA 417 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lA 417 (644)
+++++++|+|+|||...
T Consensus 68 ~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999764
No 324
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.19 E-value=0.099 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 325
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.18 E-value=0.08 Score=55.62 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.4
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
+.|.|+|++|+|||+|..+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999987
No 326
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.18 E-value=0.062 Score=62.70 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..++|+||+|+||||+.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999764
No 327
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.17 E-value=0.086 Score=57.06 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.1
Q ss_pred CCccEEEecCCCCChHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..+-.++.|+||||||+++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 335688999999999999988775
No 328
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.077 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.|+|.|++|+|||+|+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998764
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.10 E-value=0.07 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999765
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.10 E-value=0.13 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.+++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 331
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.09 E-value=0.033 Score=54.19 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.1
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||...-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998543
No 332
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.06 E-value=0.033 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 333
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.05 E-value=0.014 Score=57.63 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.6
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.+-|.||||+||||+++.|++.+|.+++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 377899999999999999999999887654
No 334
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.03 E-value=0.11 Score=58.50 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+||||+++.|+..+
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 468999999999999999998876
No 335
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.01 E-value=0.07 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+...|+|.|+||+|||+|...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999754
No 336
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.00 E-value=0.067 Score=60.42 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+...+.|.||+|+||||+++.|+..+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 33469999999999999999998876
No 337
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.99 E-value=0.025 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
++..|.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999998875
No 338
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.93 E-value=0.099 Score=54.70 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=16.9
Q ss_pred ccEEEecCCCCChHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELA 421 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA 421 (644)
+++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 469999999999998764443
No 339
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.91 E-value=0.067 Score=62.04 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..++|+||+|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45899999999999999999764
No 340
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.11 Score=57.91 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||++.|+..+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998765
No 341
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.90 E-value=0.012 Score=55.16 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=17.5
Q ss_pred ccEEEecCCCCChHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAREL 420 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaL 420 (644)
.-+.|+||+|+|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999953
No 342
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.89 E-value=0.15 Score=46.94 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 343
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.094 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999865
No 344
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.88 E-value=0.016 Score=56.63 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|+||+|+|||||++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999999977
No 345
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.87 E-value=0.028 Score=57.45 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=22.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
+++++.+|+|+|||..+-..+-..+...+.+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv 62 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVV 62 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEE
Confidence 4599999999999987766655555444444
No 346
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.86 E-value=0.031 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..++|.|++|+|||+++..|+..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998764
No 347
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.85 E-value=0.13 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+.|+|.|+||+|||+|...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999754
No 348
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.83 E-value=0.15 Score=47.89 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.2
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
...|+|.|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 349
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.83 E-value=0.0066 Score=58.40 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.6
Q ss_pred EEEecCCCCChHHHHHHHHHHcC
Q 006458 403 MLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
|.|.||+|+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999884
No 350
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.82 E-value=0.047 Score=63.58 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=33.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhcc-----CCCCccEEEecCCCCChHHHHHHHHHH
Q 006458 365 KNGNGFGDVILHPSLQKRIRQLSGATANTKAH-----NAPFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 365 ~~~~~~~~vig~~~~~~~l~~l~~~~~~~~~~-----~~p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.+...|+++-..+.+.+.+...-......... -....++++.||+|+|||+++..+...
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44556888877777666654321000000000 001135999999999999977766443
No 351
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.80 E-value=0.0095 Score=61.09 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=26.3
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC---CCeEEEeCCCCC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVA 437 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~---~~~~~i~~~~l~ 437 (644)
.|.|.||+|+||||+++.|+..++ ..+..+++.++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 489999999999999999999775 456666666654
No 352
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.79 E-value=0.048 Score=54.14 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.2
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||...-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 469999999999998643
No 353
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.78 E-value=0.097 Score=59.21 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+.+.|+||+|+|||||.++|+..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999998754
No 354
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.77 E-value=0.14 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
-.|+|.|++|+|||+|+..|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999865
No 355
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.75 E-value=0.15 Score=45.89 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=20.2
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.|+|.|++|+|||+|++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 356
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.72 E-value=0.13 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 357
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.69 E-value=0.019 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||.|+|||||++.|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999987
No 358
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.68 E-value=0.059 Score=53.95 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.2
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 459999999999998644
No 359
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.66 E-value=0.019 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=22.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
.+.|.||+|+|||||++.|+..+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999874
No 360
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.64 E-value=0.017 Score=56.95 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=25.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC--CCeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG--LDYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~--~~~~~ 430 (644)
.-|.|.||||+||||+++.|+..++ .+++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3588999999999999999999986 45543
No 361
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.64 E-value=0.034 Score=50.54 Aligned_cols=20 Identities=40% Similarity=0.763 Sum_probs=18.6
Q ss_pred cEEEecCCCCChHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELA 421 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA 421 (644)
.|+|.|+||+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999985
No 362
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.64 E-value=0.015 Score=57.04 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=15.4
Q ss_pred ccEEEecCCCCChHHHHHHHH-HHc
Q 006458 401 RNMLFYGPPGTGKTMAARELA-RKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA-~~l 424 (644)
..+.|+||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 348899999999999999999 775
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.61 E-value=0.069 Score=65.88 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
+...+.|+||+|+||||+++.|...+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 334689999999999999999998863
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.60 E-value=0.033 Score=52.33 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=26.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEeC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 433 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~~ 433 (644)
+.+.|.|++|+|||+++..|+..+ |..+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 458999999999999999998875 455555553
No 365
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.59 E-value=0.019 Score=56.55 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=26.7
Q ss_pred cEEEecCCCCChHHHHHHHHHHcCCCeEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKSGLDYAL 430 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~~~~~~ 430 (644)
.|.|.|++|||||++++.||+.+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58999999999999999999999998864
No 366
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.59 E-value=0.02 Score=56.13 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|.||+|+|||||++.|+..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4588999999999999999998764
No 367
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.59 E-value=0.16 Score=51.85 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=28.9
Q ss_pred CCCCccccChHHHHHHHHHH-------HHhhchhccCCCCccEEEecCCCCChHHHH
Q 006458 368 NGFGDVILHPSLQKRIRQLS-------GATANTKAHNAPFRNMLFYGPPGTGKTMAA 417 (644)
Q Consensus 368 ~~~~~vig~~~~~~~l~~l~-------~~~~~~~~~~~p~~~iLL~GppGtGKT~lA 417 (644)
.+|+++-..+.+.+.|...- ...........+.+++++++|+|||||...
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35777766777666664310 000001111123468999999999999753
No 368
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.58 E-value=0.14 Score=52.30 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
....|.|+|+||+|||+|..+|...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4457999999999999999999754
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.58 E-value=0.15 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+||||+++.|+..+
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 468999999999999999998875
No 370
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.57 E-value=0.054 Score=56.28 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=23.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
.+..+.|.||+|+||||+++.|+..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 335688999999999999999998875
No 371
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.56 E-value=0.037 Score=57.32 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=23.1
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
+...+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334688999999999999999998763
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.53 E-value=0.022 Score=58.74 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
++..+.|+||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34578999999999999999999876
No 373
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.52 E-value=0.11 Score=53.50 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCCccEEEecCCCCChHHHHHHHHHH
Q 006458 398 APFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 398 ~p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.|++-|.|+|+||+|||+|...|...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34456999999999999999999754
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.48 E-value=0.022 Score=56.46 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD 427 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~ 427 (644)
..+-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 358899999999999999999988754
No 375
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.48 E-value=0.12 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHHc
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
...+.|.|+||+|||||...|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998764
No 376
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.43 E-value=0.067 Score=57.79 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.2
Q ss_pred ccEEEecCCCCChHHHH
Q 006458 401 RNMLFYGPPGTGKTMAA 417 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lA 417 (644)
+++|++||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46999999999999875
No 377
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.43 E-value=0.083 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 378
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.43 E-value=0.087 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..|+|.|++|+|||+|+..+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 379
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.42 E-value=0.072 Score=51.94 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred ccEEEecCCCCChHHHH
Q 006458 401 RNMLFYGPPGTGKTMAA 417 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lA 417 (644)
+++++.+|+|+|||...
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999863
No 380
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.38 E-value=0.072 Score=56.68 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.9
Q ss_pred ccEEEecCCCCChHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAREL 420 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaL 420 (644)
+++++.+|+|+|||.+.-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 36999999999999954443
No 381
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.36 E-value=0.12 Score=54.48 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=16.1
Q ss_pred ccEEEecCCCCChHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAREL 420 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaL 420 (644)
+++++.+|+|+|||..+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHH
Confidence 35999999999999865443
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.28 E-value=0.12 Score=53.94 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc---CCCeEEE
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALM 431 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i 431 (644)
....+.|.|+||+|||+++..|+..+ +..+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34568999999999999999998765 4444443
No 383
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.28 E-value=0.025 Score=63.53 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.7
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcC----CCeEEEeCC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSG----LDYALMTGG 434 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~----~~~~~i~~~ 434 (644)
+..|+|.|+||+||||+++.|++.++ .+++.+++.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 35689999999999999999999986 777777643
No 384
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.26 E-value=0.25 Score=51.48 Aligned_cols=19 Identities=47% Similarity=0.527 Sum_probs=16.1
Q ss_pred ccEEEecCCCCChHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARE 419 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAka 419 (644)
+++++.+|+|+|||..+-.
T Consensus 45 ~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999986543
No 385
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.26 E-value=0.29 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999998887654
No 386
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.26 E-value=0.025 Score=58.36 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=22.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|+||+|+|||||++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 458999999999999999999987
No 387
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.24 E-value=0.044 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..++|.|++|+|||+|.+.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998754
No 388
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.23 E-value=0.12 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=18.0
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+++++.+|+|+|||+.+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 46999999999999876554433
No 389
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.054 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.6
Q ss_pred CccEEEecCCCCChHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~ 422 (644)
...|+|.|++|+|||+|+..+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999984
No 390
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.18 E-value=0.18 Score=48.47 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.1
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||...-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 459999999999998643
No 391
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.17 E-value=0.062 Score=57.09 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..++|.||||+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 459999999999999999998865
No 392
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.17 E-value=0.16 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.0
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
...|+|.|++|+|||+|+..|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346999999999999999999765
No 393
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.16 E-value=0.083 Score=51.87 Aligned_cols=17 Identities=47% Similarity=0.778 Sum_probs=14.7
Q ss_pred ccEEEecCCCCChHHHH
Q 006458 401 RNMLFYGPPGTGKTMAA 417 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lA 417 (644)
+++++.+|+|+|||...
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 45999999999999864
No 394
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.15 E-value=0.078 Score=51.64 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=24.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc---CCCeEEE
Q 006458 402 NMLFYGPPGTGKTMAARELARKS---GLDYALM 431 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i 431 (644)
-|.|.||+|+||||+++.|+..+ |.+++.+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 48889999999999999999987 4555544
No 395
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.12 E-value=0.27 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|+||+|||+|..+|...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.12 E-value=0.08 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||||+|||||.+.|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999998765
No 397
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.09 E-value=0.37 Score=50.83 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.7
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.+.+.|.|+||+|||+|.+.|...
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 345889999999999999999754
No 398
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.08 E-value=0.16 Score=48.64 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=25.3
Q ss_pred EEEecCCCCChHHHHHHHHHHc---CCCeEEEe
Q 006458 403 MLFYGPPGTGKTMAARELARKS---GLDYALMT 432 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~ 432 (644)
|.|-|+.|+||||.++.|++.+ |.+++.+.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999887 67776654
No 399
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.07 E-value=0.29 Score=51.24 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.8
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..|.++|.||+|||+|..+|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTT
T ss_pred CeEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999864
No 400
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.04 E-value=0.065 Score=58.34 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=15.7
Q ss_pred CccEEEecCCCCChHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAA 417 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lA 417 (644)
.+++|++||+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 467999999999999863
No 401
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.02 E-value=0.17 Score=60.55 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.1
Q ss_pred ccEEEecCCCCChHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELA 421 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA 421 (644)
..++|+||+|+||||+.+.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568999999999999999984
No 402
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.00 E-value=0.038 Score=54.72 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.0
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||...-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 459999999999998543
No 403
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.98 E-value=0.15 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..|...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999753
No 404
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.96 E-value=0.084 Score=51.60 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=26.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCCeEEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLDYALM 431 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~~~~i 431 (644)
.-|.|.|++|+||||+++.|++.++.++..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 3489999999999999999999998754444
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.93 E-value=0.027 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|.||+|+||||+++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999876
No 406
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.92 E-value=0.23 Score=61.09 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
+...+.|+||+|+|||||++.|+..+
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999998876
No 407
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.91 E-value=0.12 Score=56.08 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..|+|+|.||+|||+|...|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4699999999999999999854
No 408
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.88 E-value=0.031 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.++||.|+||+|||++|..|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57999999999999999999875
No 409
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.84 E-value=0.13 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..|+|.|++|+|||+|+..+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999986543
No 410
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.80 E-value=0.015 Score=58.23 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=23.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHcC
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
.+.-|+|.|++|+||||+++.|++.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 335689999999999999999999983
No 411
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.79 E-value=0.067 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.7
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..|+|.|++|+|||+|+..+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999854
No 412
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.71 E-value=0.055 Score=53.37 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred cEEEecCCCCChHHHHHHHHHHc-------CCCeEEEe
Q 006458 402 NMLFYGPPGTGKTMAARELARKS-------GLDYALMT 432 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l-------~~~~~~i~ 432 (644)
-|.|.||+|+||||+++.|++.+ |.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 48889999999999999999887 55665443
No 413
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.69 E-value=0.089 Score=51.37 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=20.6
Q ss_pred EEEecCCCCChHH-HHHHHHHH--cCCCeEEEe
Q 006458 403 MLFYGPPGTGKTM-AARELARK--SGLDYALMT 432 (644)
Q Consensus 403 iLL~GppGtGKT~-lAkaLA~~--l~~~~~~i~ 432 (644)
.+++||.|+|||+ +.+.+-+. .+..++.++
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 7889999999999 55554332 256665553
No 414
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.68 E-value=0.25 Score=52.01 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.2
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
+++++.+|+|+|||+.+-
T Consensus 78 ~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCEEECCCSCSSSHHHHH
T ss_pred CCEEEECCCCCcccHHHH
Confidence 359999999999998743
No 415
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.66 E-value=0.039 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||++++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998764
No 416
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.65 E-value=0.025 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.6
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..|+|.|++|+|||+|++.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 417
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.60 E-value=0.14 Score=57.32 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=31.6
Q ss_pred ccccChHHHHHHHHHHHHhhchhccCCCCccEEEecCCCCChHHHHHHHHHHc
Q 006458 372 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 372 ~vig~~~~~~~l~~l~~~~~~~~~~~~p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+...+.....+..+....... .+++|+++|+|+|||.++-.++..+
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~------~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQG------KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTT------CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcC------CCceEEEecCCCChHHHHHHHHHHH
Confidence 3456677777777666554321 1458999999999999987776553
No 418
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.58 E-value=0.04 Score=54.31 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..|.|.|++|+||||+++.|++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999984
No 419
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.57 E-value=0.044 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHcC
Q 006458 402 NMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
-.+|+||+|+|||+++++|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988775
No 420
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.56 E-value=0.62 Score=46.83 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
....|+|+|.||+|||+|..+|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 3457999999999999999999754
No 421
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.50 E-value=0.046 Score=60.41 Aligned_cols=35 Identities=6% Similarity=0.011 Sum_probs=28.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC-----CeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL-----DYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~-----~~~~i~~~~ 435 (644)
..|+|.|++||||||++++||+.++. ++..+++..
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 46999999999999999999999974 344455544
No 422
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.49 E-value=0.25 Score=56.47 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=17.2
Q ss_pred ccEEEecCCCCChHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAREL 420 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaL 420 (644)
..+.|.||+|+|||||++.+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 34889999999999999754
No 423
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.41 E-value=0.15 Score=58.16 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=26.6
Q ss_pred CeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCC
Q 006458 460 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 511 (644)
Q Consensus 460 ~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~ 511 (644)
..+|+|||++.+ +......+..++..+.......+|+++...+
T Consensus 319 l~~lVlDEAH~l---------~~~~~~~l~~Il~~l~~~~~~llil~SAT~~ 361 (666)
T 3o8b_A 319 YDIIICDECHST---------DSTTILGIGTVLDQAETAGARLVVLATATPP 361 (666)
T ss_dssp CSEEEETTTTCC---------SHHHHHHHHHHHHHTTTTTCSEEEEEESSCT
T ss_pred ccEEEEccchhc---------CccHHHHHHHHHHhhhhcCCceEEEECCCCC
Confidence 578999999765 2234444666666665555555666655443
No 424
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.41 E-value=0.18 Score=62.26 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCChHHHHHHHHHHc
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
|...+-|+||+|+||||+++.|.+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 33468999999999999999998876
No 425
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.35 E-value=0.18 Score=58.10 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.9
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
.+++++||+|+|||+.+-
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 569999999999998773
No 426
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.32 E-value=0.39 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..+.|.|.||+|||+|...|...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999754
No 427
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.28 E-value=0.039 Score=55.82 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
++.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 428
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.25 E-value=0.045 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.4
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.++|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 429
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.24 E-value=1.1 Score=46.76 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.5
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
....++|+|+||+|||+|...|+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999764
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.24 E-value=0.19 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999987664
No 431
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.23 E-value=0.036 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.1
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.+.|.||+|+|||||++.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 432
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.22 E-value=0.086 Score=52.20 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=29.6
Q ss_pred cCCCCccEEEecCCCCChHHHHHHHHHHc--CCCeEEEeC
Q 006458 396 HNAPFRNMLFYGPPGTGKTMAARELARKS--GLDYALMTG 433 (644)
Q Consensus 396 ~~~p~~~iLL~GppGtGKT~lAkaLA~~l--~~~~~~i~~ 433 (644)
++.....+++.|.+|+|||+++..|+..+ |..+..++.
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34444678999999999999999998776 666666664
No 433
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.15 E-value=0.11 Score=49.34 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35999999999999999999754
No 434
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.14 E-value=0.042 Score=62.36 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=19.2
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.++++||||||||+++..+...+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999887776553
No 435
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.13 E-value=0.049 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 558899999999999999999875
No 436
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.09 E-value=0.045 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 437
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.09 E-value=0.051 Score=49.25 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
-.|+|.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.04 E-value=0.39 Score=54.22 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred EEEecCCCCChHHHHHHHHHHc---------CCCeEEEeCCCC-------------------------------------
Q 006458 403 MLFYGPPGTGKTMAARELARKS---------GLDYALMTGGDV------------------------------------- 436 (644)
Q Consensus 403 iLL~GppGtGKT~lAkaLA~~l---------~~~~~~i~~~~l------------------------------------- 436 (644)
+.|.||+|+|||||++.|+..+ +..+.++.....
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 460 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI 460 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh
Q ss_pred --CCCchhHHHHHHHHHHHHHhcCCCeEEEEeccchhhhccccCcCCHHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCCC
Q 006458 437 --APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDL 514 (644)
Q Consensus 437 --~~~g~~~~~~l~~~f~~a~~~~~~~VL~IDEid~l~~~r~~~~~~~~~~~~l~~lL~~~~~~~~~viiI~ttN~~~~l 514 (644)
.....-+.+....+.-...-...|.||++||=-. +.+...+..+..++..+....+..+|+.| .
T Consensus 461 ~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~--------gLD~~~~~~i~~ll~~l~~~~g~tviivt------H 526 (608)
T 3j16_B 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA--------YLDSEQRIICSKVIRRFILHNKKTAFIVE------H 526 (608)
T ss_dssp SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT--------TCCHHHHHHHHHHHHHHHHHHTCEEEEEC------S
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC--------CCCHHHHHHHHHHHHHHHHhCCCEEEEEe------C
Q ss_pred CHHHhcc-cceeEec
Q 006458 515 DSAVADR-IDEVLEF 528 (644)
Q Consensus 515 d~al~~R-fd~~i~~ 528 (644)
|..+..+ +|.++.+
T Consensus 527 dl~~~~~~aDrvivl 541 (608)
T 3j16_B 527 DFIMATYLADKVIVF 541 (608)
T ss_dssp CHHHHHHHCSEEEEC
T ss_pred CHHHHHHhCCEEEEE
No 439
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.95 E-value=0.45 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.9
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..|+|.|+||+|||+|...|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3599999999999999999975
No 440
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.92 E-value=0.049 Score=53.97 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998765
No 441
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.85 E-value=0.03 Score=52.66 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.2
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|+||+|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998873
No 442
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.75 E-value=0.061 Score=48.75 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
-.|+|.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999765
No 443
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.74 E-value=0.65 Score=48.84 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.2
Q ss_pred ccEEEecCCCCChHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAREL 420 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaL 420 (644)
+++++.+|+|+|||...-..
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHH
Confidence 46999999999999765443
No 444
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.70 E-value=0.044 Score=61.20 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=27.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC----CCeEEEeCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG----LDYALMTGGD 435 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~----~~~~~i~~~~ 435 (644)
..+.|.|++|+||||+++.|+..++ ..+..+++..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4589999999999999999999885 3454455533
No 445
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.69 E-value=0.047 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998765
No 446
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.66 E-value=0.063 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
-.|+|.|++|+|||+|++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998753
No 447
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.65 E-value=0.6 Score=50.12 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=14.3
Q ss_pred ccEEEecCCCCChHHH
Q 006458 401 RNMLFYGPPGTGKTMA 416 (644)
Q Consensus 401 ~~iLL~GppGtGKT~l 416 (644)
+++++.+|+|+|||..
T Consensus 94 ~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 94 RDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCchHH
Confidence 4699999999999984
No 448
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.64 E-value=0.06 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.5
Q ss_pred cEEEecCCCCChHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~ 422 (644)
.+.|.|+||+|||+|.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 449
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.63 E-value=0.063 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 450
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.61 E-value=0.49 Score=49.87 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=30.1
Q ss_pred CCCccEEEe-cCCCCChHHHHHHHHHHc---CCCeEEEeCCC
Q 006458 398 APFRNMLFY-GPPGTGKTMAARELARKS---GLDYALMTGGD 435 (644)
Q Consensus 398 ~p~~~iLL~-GppGtGKT~lAkaLA~~l---~~~~~~i~~~~ 435 (644)
.+.+.|.++ |..|+|||+++-.||..+ |..++.+++..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 344667777 589999999999888765 88999998773
No 451
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.59 E-value=0.061 Score=49.15 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.1
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|+||+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999998643
No 452
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.55 E-value=0.057 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
..+.|.||+|+|||||.+.|+..+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3488999999999999999987753
No 453
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.55 E-value=0.052 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.4
Q ss_pred cEEEecCCCCChHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~ 422 (644)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 454
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.54 E-value=0.066 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
...|+|.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999764
No 455
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.51 E-value=0.063 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999754
No 456
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.51 E-value=0.05 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998765
No 457
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.50 E-value=0.06 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.+.|.||+|+|||||.+.|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999985
No 458
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.49 E-value=0.12 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..++|+|+.|+||||+.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 458999999999999999999764
No 459
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.48 E-value=0.47 Score=58.36 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+-|+||+|+||||+++.|+..+
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 458899999999999999998765
No 460
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.46 E-value=0.39 Score=50.00 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.8
Q ss_pred ccEEEecCCCCChHHHH
Q 006458 401 RNMLFYGPPGTGKTMAA 417 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lA 417 (644)
+++++.+|+|+|||..+
T Consensus 59 ~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 45999999999999864
No 461
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.45 E-value=0.069 Score=48.53 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999865
No 462
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.45 E-value=0.058 Score=56.87 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCCC
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGLD 427 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~~ 427 (644)
..+.|.||+|+|||||++.|+..+..+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999987643
No 463
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.42 E-value=0.053 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998765
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.37 E-value=0.06 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998765
No 465
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.36 E-value=0.058 Score=56.93 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999999875
No 466
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.34 E-value=0.21 Score=57.32 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=16.5
Q ss_pred ccEEEecCCCCChHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARE 419 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAka 419 (644)
.+++++||+|+|||+.+-.
T Consensus 47 ~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHH
Confidence 5699999999999998743
No 467
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.32 E-value=0.074 Score=48.14 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 468
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.32 E-value=0.11 Score=55.14 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=25.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc---CCCeEEEe
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT 432 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l---~~~~~~i~ 432 (644)
.|+++.||+|+|||++++.++..+ |..++.++
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 579999999999999999997664 55555554
No 469
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.32 E-value=0.075 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..+.|.||+|+|||||.+.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999985
No 470
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.30 E-value=0.1 Score=60.00 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=15.9
Q ss_pred ccEEEecCCCCChHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR 418 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk 418 (644)
.++++.||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 469999999999999874
No 471
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.26 E-value=0.072 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.9
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.|+|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 472
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.25 E-value=0.072 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.0
Q ss_pred cEEEecCCCCChHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~ 422 (644)
.|+|.|+||+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 473
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.24 E-value=0.077 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.-|.|.|++|+||||+++.|+..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999887
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.23 E-value=0.064 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998775
No 475
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.22 E-value=0.065 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998875
No 476
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.22 E-value=0.067 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=21.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999998765
No 477
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.20 E-value=0.067 Score=53.90 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred ccEEEecCCCCChHHHHHHHHHHc
Q 006458 401 RNMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l 424 (644)
..+.|.||+|+|||||.+.|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 358899999999999999998775
No 478
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.12 E-value=0.067 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999998765
No 479
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.11 E-value=0.071 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..++|.|+||+|||+|.+.|+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.10 E-value=0.067 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.9
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..|...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 481
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.06 E-value=0.092 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.9
Q ss_pred CccEEEecCCCCChHHHHHHHHHH
Q 006458 400 FRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
...|+|.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999753
No 482
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.19 Score=60.82 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.0
Q ss_pred ccEEEecCCCCChHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELA 421 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA 421 (644)
.++|++||+|+|||+.+-..+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 469999999999998765443
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.06 E-value=0.077 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..++|.|++|+|||+|++.|+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 484
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.05 E-value=0.15 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.6
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4899999999999999998753
No 485
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.04 E-value=0.09 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 486
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.01 E-value=0.062 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999998765
No 487
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.97 E-value=0.073 Score=62.14 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=19.2
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.++++||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999887776553
No 488
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.97 E-value=0.08 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999854
No 489
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.93 E-value=0.076 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+..+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999998765
No 490
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.91 E-value=0.087 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
..|+|.|++|+|||+|+..|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999874
No 491
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.90 E-value=0.077 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred ccEEEecCCCCChHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELAR 422 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~ 422 (644)
..|+|.|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 492
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.88 E-value=0.098 Score=51.40 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=24.8
Q ss_pred ccEEEecCCCCChHHHHHHHHHHcCC----CeEE
Q 006458 401 RNMLFYGPPGTGKTMAARELARKSGL----DYAL 430 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~l~~----~~~~ 430 (644)
.-|.|.|++|+||||+++.|++.++. +++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 45888999999999999999987644 5555
No 493
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.85 E-value=0.076 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 48899999999999999999765
No 494
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.84 E-value=0.085 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred ccEEEecCCCCChHHHHHHHHHH
Q 006458 401 RNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
-.|+|.|++|+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999743
No 495
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.82 E-value=0.54 Score=52.08 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=14.4
Q ss_pred ccEEEecCCCCChHHH
Q 006458 401 RNMLFYGPPGTGKTMA 416 (644)
Q Consensus 401 ~~iLL~GppGtGKT~l 416 (644)
+++|+.+|+|+|||..
T Consensus 112 ~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFA 127 (563)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCccHH
Confidence 5799999999999984
No 496
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.81 E-value=0.27 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=17.7
Q ss_pred ccEEEecCCCCChHHHHH-HHHHH
Q 006458 401 RNMLFYGPPGTGKTMAAR-ELARK 423 (644)
Q Consensus 401 ~~iLL~GppGtGKT~lAk-aLA~~ 423 (644)
+++|+++|+|+|||..+- .+...
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHHHH
Confidence 679999999999998643 34444
No 497
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.79 E-value=0.098 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCChHHHHHHHHHH
Q 006458 399 PFRNMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 399 p~~~iLL~GppGtGKT~lAkaLA~~ 423 (644)
+...|+|.|++|+|||+|+..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3357999999999999999999865
No 498
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.78 E-value=0.61 Score=50.77 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.3
Q ss_pred cEEEecCCCCChHHHHHHHHHH
Q 006458 402 NMLFYGPPGTGKTMAARELARK 423 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~ 423 (644)
.|.|.|+||+|||+|...|...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4999999999999999999875
No 499
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.77 E-value=0.079 Score=56.21 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.0
Q ss_pred cEEEecCCCCChHHHHHHHHHHc
Q 006458 402 NMLFYGPPGTGKTMAARELARKS 424 (644)
Q Consensus 402 ~iLL~GppGtGKT~lAkaLA~~l 424 (644)
.+.|.||+|+|||||.+.|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48899999999999999999775
No 500
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.76 E-value=0.093 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.5
Q ss_pred CccEEEecCCCCChHHHHHHHHHHcC
Q 006458 400 FRNMLFYGPPGTGKTMAARELARKSG 425 (644)
Q Consensus 400 ~~~iLL~GppGtGKT~lAkaLA~~l~ 425 (644)
...++|.|++|+|||+|+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999998753
Done!