Query 006461
Match_columns 644
No_of_seqs 301 out of 691
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 23:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 5.3E-69 1.1E-73 552.1 11.6 283 152-452 2-285 (286)
2 TIGR03843 conserved hypothetic 100.0 4E-48 8.6E-53 388.5 14.8 192 165-429 10-230 (253)
3 cd01807 GDX_N ubiquitin-like d 99.6 1.2E-15 2.7E-20 127.5 8.0 67 41-107 1-71 (74)
4 KOG0005 Ubiquitin-like protein 99.6 5.5E-16 1.2E-20 127.0 4.4 66 41-106 1-70 (70)
5 cd01793 Fubi Fubi ubiquitin-li 99.6 4.2E-15 9.1E-20 124.5 7.7 64 41-106 1-68 (74)
6 cd01802 AN1_N ubiquitin-like d 99.6 5.3E-15 1.2E-19 132.7 8.7 70 37-106 24-97 (103)
7 cd01797 NIRF_N amino-terminal 99.6 4.5E-15 9.8E-20 126.7 7.7 66 41-106 1-72 (78)
8 cd01798 parkin_N amino-termina 99.6 5.9E-15 1.3E-19 122.1 7.2 65 43-107 1-69 (70)
9 PTZ00044 ubiquitin; Provisiona 99.6 8.8E-15 1.9E-19 122.1 8.1 67 41-107 1-71 (76)
10 cd01810 ISG15_repeat2 ISG15 ub 99.5 2.5E-14 5.5E-19 119.8 7.3 65 43-107 1-69 (74)
11 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 4.5E-14 9.7E-19 119.5 7.7 66 41-106 2-71 (73)
12 cd01794 DC_UbP_C dendritic cel 99.5 4.8E-14 1E-18 118.1 7.1 64 43-106 1-68 (70)
13 KOG0003 Ubiquitin/60s ribosoma 99.5 5.4E-15 1.2E-19 133.5 1.2 66 41-106 1-70 (128)
14 cd01806 Nedd8 Nebb8-like ubiq 99.5 1.3E-13 2.8E-18 114.0 8.6 67 41-107 1-71 (76)
15 cd01805 RAD23_N Ubiquitin-like 99.5 1.4E-13 3E-18 115.0 8.5 67 41-107 1-73 (77)
16 cd01809 Scythe_N Ubiquitin-lik 99.5 1.5E-13 3.2E-18 112.6 8.3 67 41-107 1-71 (72)
17 KOG0004 Ubiquitin/40S ribosoma 99.5 1.7E-14 3.8E-19 137.3 3.0 66 41-106 1-70 (156)
18 cd01803 Ubiquitin Ubiquitin. U 99.5 1.4E-13 3E-18 113.8 7.9 67 41-107 1-71 (76)
19 cd01804 midnolin_N Ubiquitin-l 99.4 2.4E-13 5.3E-18 115.6 7.7 67 40-107 1-71 (78)
20 cd01796 DDI1_N DNA damage indu 99.4 2.4E-13 5.2E-18 113.7 7.0 64 43-106 1-70 (71)
21 cd01808 hPLIC_N Ubiquitin-like 99.4 5.2E-13 1.1E-17 110.9 7.6 65 41-106 1-69 (71)
22 cd01792 ISG15_repeat1 ISG15 ub 99.4 4.8E-13 1.1E-17 113.9 7.1 68 40-107 2-75 (80)
23 cd01790 Herp_N Homocysteine-re 99.3 2.2E-12 4.8E-17 111.4 7.5 67 41-107 2-78 (79)
24 PF00240 ubiquitin: Ubiquitin 99.3 9.9E-12 2.1E-16 101.6 7.0 62 46-107 1-66 (69)
25 cd01812 BAG1_N Ubiquitin-like 99.3 1.1E-11 2.5E-16 101.6 7.2 65 41-106 1-69 (71)
26 cd01763 Sumo Small ubiquitin-r 99.3 2.2E-11 4.7E-16 105.7 9.1 70 37-106 8-81 (87)
27 cd01800 SF3a120_C Ubiquitin-li 99.2 4.8E-11 1E-15 100.8 6.6 60 48-107 5-68 (76)
28 TIGR00601 rad23 UV excision re 99.1 2.8E-10 6E-15 122.8 9.5 67 41-107 1-74 (378)
29 PF00454 PI3_PI4_kinase: Phosp 99.1 6.3E-13 1.4E-17 131.6 -10.7 155 217-391 27-205 (235)
30 smart00213 UBQ Ubiquitin homol 99.1 4.5E-10 9.9E-15 89.1 7.5 60 41-101 1-64 (64)
31 cd01813 UBP_N UBP ubiquitin pr 99.0 6E-10 1.3E-14 94.5 7.3 65 41-106 1-72 (74)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 2.1E-10 4.7E-15 98.4 4.4 49 59-107 19-74 (75)
33 cd01799 Hoil1_N Ubiquitin-like 99.0 5.5E-10 1.2E-14 95.2 6.2 62 43-105 5-72 (75)
34 KOG0010 Ubiquitin-like protein 99.0 9.9E-10 2.1E-14 120.5 7.2 76 39-115 14-93 (493)
35 cd01769 UBL Ubiquitin-like dom 98.8 2E-08 4.4E-13 80.6 7.1 62 45-106 2-67 (69)
36 KOG0001 Ubiquitin and ubiquiti 98.7 4.9E-08 1.1E-12 77.2 8.0 66 42-107 1-70 (75)
37 PF11976 Rad60-SLD: Ubiquitin- 98.7 8.6E-08 1.9E-12 79.3 8.2 66 41-106 1-71 (72)
38 cd01814 NTGP5 Ubiquitin-like N 98.7 3.6E-08 7.7E-13 90.5 5.8 69 39-107 3-90 (113)
39 cd01795 USP48_C USP ubiquitin- 98.4 4.7E-07 1E-11 81.8 6.2 56 51-106 15-75 (107)
40 KOG0011 Nucleotide excision re 98.4 5.4E-07 1.2E-11 95.4 7.2 65 41-105 1-71 (340)
41 KOG4248 Ubiquitin-like protein 98.2 1.5E-06 3.2E-11 102.2 6.1 66 41-107 3-72 (1143)
42 cd01789 Alp11_N Ubiquitin-like 98.2 7.5E-06 1.6E-10 71.1 8.4 66 42-107 3-80 (84)
43 PLN02560 enoyl-CoA reductase 98.2 3.8E-06 8.3E-11 89.0 7.7 66 41-106 1-81 (308)
44 cd00196 UBQ Ubiquitin-like pro 97.7 0.00019 4.1E-09 53.0 7.2 61 46-106 3-67 (69)
45 KOG3829 Uncharacterized conser 97.6 0.00012 2.7E-09 79.7 7.6 173 149-347 151-389 (486)
46 PF14560 Ubiquitin_2: Ubiquiti 97.5 0.00045 9.7E-09 59.9 7.7 66 42-107 3-82 (87)
47 PF13881 Rad60-SLD_2: Ubiquiti 97.3 0.0016 3.4E-08 60.1 8.9 67 40-106 2-86 (111)
48 cd01788 ElonginB Ubiquitin-lik 97.2 0.00098 2.1E-08 61.9 7.0 56 52-107 13-80 (119)
49 cd01801 Tsc13_N Ubiquitin-like 97.2 0.00092 2E-08 56.8 6.2 64 42-105 2-74 (77)
50 KOG0006 E3 ubiquitin-protein l 96.6 0.0063 1.4E-07 65.1 7.9 66 42-107 2-74 (446)
51 PF11543 UN_NPL4: Nuclear pore 96.2 0.0056 1.2E-07 53.3 4.3 66 40-106 4-78 (80)
52 cd01811 OASL_repeat1 2'-5' oli 95.8 0.029 6.4E-07 48.9 6.7 65 41-106 1-74 (80)
53 PF07804 HipA_C: HipA-like C-t 95.7 0.0019 4.1E-08 55.1 -1.0 38 297-339 40-77 (79)
54 KOG1872 Ubiquitin-specific pro 95.1 0.056 1.2E-06 60.5 7.6 65 42-107 5-74 (473)
55 PF06702 DUF1193: Protein of u 94.0 0.031 6.7E-07 57.3 2.2 107 297-428 89-198 (221)
56 KOG1769 Ubiquitin-like protein 93.0 0.53 1.2E-05 43.1 8.1 70 38-107 18-91 (99)
57 cd05168 PI4Kc_III_beta Phospho 92.4 0.16 3.4E-06 54.2 4.6 40 300-347 133-172 (293)
58 PF11470 TUG-UBL1: GLUT4 regul 92.0 0.53 1.1E-05 39.9 6.4 59 47-105 3-65 (65)
59 cd00893 PI4Kc_III Phosphoinosi 91.9 0.3 6.4E-06 52.0 6.0 40 300-347 131-170 (289)
60 cd00895 PI3Kc_C2_beta Phosphoi 91.8 0.14 3.1E-06 55.9 3.5 65 300-375 195-259 (354)
61 PF13019 Telomere_Sde2: Telome 91.2 0.44 9.6E-06 47.1 5.8 51 41-91 1-57 (162)
62 PF10302 DUF2407: DUF2407 ubiq 91.0 0.51 1.1E-05 42.8 5.6 53 42-94 2-59 (97)
63 cd05167 PI4Kc_III_alpha Phosph 90.7 0.82 1.8E-05 49.3 7.8 40 300-347 152-191 (311)
64 KOG4495 RNA polymerase II tran 89.8 0.55 1.2E-05 43.0 4.8 55 51-105 12-79 (110)
65 KOG4583 Membrane-associated ER 89.1 0.12 2.6E-06 56.0 0.0 71 37-107 6-86 (391)
66 cd05177 PI3Kc_C2_gamma Phospho 88.9 0.32 6.8E-06 53.2 3.1 41 299-347 194-234 (354)
67 KOG0903 Phosphatidylinositol 4 87.6 0.47 1E-05 56.0 3.5 113 303-430 690-809 (847)
68 cd05166 PI3Kc_II Phosphoinosit 86.8 0.66 1.4E-05 50.7 4.0 41 299-347 193-233 (353)
69 cd00894 PI3Kc_IB_gamma Phospho 84.4 0.4 8.8E-06 52.6 1.0 40 300-347 204-243 (365)
70 cd05165 PI3Kc_I Phosphoinositi 83.3 0.4 8.6E-06 52.7 0.4 40 300-347 204-243 (366)
71 cd05175 PI3Kc_IA_alpha Phospho 83.3 0.45 9.7E-06 52.3 0.7 40 300-347 203-242 (366)
72 cd05174 PI3Kc_IA_delta Phospho 83.2 0.44 9.6E-06 52.3 0.7 40 300-347 200-239 (361)
73 cd00891 PI3Kc Phosphoinositide 82.8 2.5 5.5E-05 46.2 6.2 41 299-347 194-234 (352)
74 cd05176 PI3Kc_C2_alpha Phospho 82.6 1.1 2.5E-05 49.0 3.5 41 299-347 193-233 (353)
75 cd05173 PI3Kc_IA_beta Phosphoi 81.5 0.51 1.1E-05 51.8 0.4 40 300-347 200-239 (362)
76 COG5227 SMT3 Ubiquitin-like pr 80.9 6.9 0.00015 35.7 7.1 88 20-107 4-95 (103)
77 cd00896 PI3Kc_III Phosphoinosi 80.9 0.58 1.3E-05 51.1 0.5 41 299-347 193-233 (350)
78 PF00789 UBX: UBX domain; Int 80.6 12 0.00027 31.7 8.4 68 38-105 4-80 (82)
79 KOG0013 Uncharacterized conser 80.1 2.3 4.9E-05 43.9 4.3 69 37-105 140-215 (231)
80 PTZ00303 phosphatidylinositol 76.2 0.91 2E-05 53.9 0.3 39 301-347 1138-1176(1374)
81 KOG3493 Ubiquitin-like protein 76.1 1.4 2.9E-05 37.9 1.2 54 42-95 3-56 (73)
82 PF08817 YukD: WXG100 protein 75.9 5.8 0.00013 34.0 5.0 65 41-105 3-78 (79)
83 cd06409 PB1_MUG70 The MUG70 pr 75.3 9 0.00019 34.4 6.2 37 43-79 3-39 (86)
84 cd00142 PI3Kc_like Phosphoinos 73.8 2 4.4E-05 43.4 2.1 42 299-347 119-160 (219)
85 smart00146 PI3Kc Phosphoinosit 71.5 1.4 3E-05 44.0 0.2 42 298-347 91-132 (202)
86 KOG0902 Phosphatidylinositol 4 71.2 1.3 2.9E-05 55.5 0.1 41 300-348 1644-1684(1803)
87 PRK09775 putative DNA-binding 71.1 1.6 3.5E-05 49.1 0.7 40 298-341 328-368 (442)
88 cd05169 PIKKc_TOR TOR (Target 70.7 1.8 3.8E-05 45.4 0.8 41 299-346 172-212 (280)
89 smart00166 UBX Domain present 70.4 30 0.00065 29.5 8.1 54 39-92 3-58 (80)
90 KOG0906 Phosphatidylinositol 3 68.8 4.3 9.4E-05 47.8 3.4 41 299-347 685-725 (843)
91 cd05124 AFK Actin-Fragmin Kina 65.8 6.9 0.00015 41.0 3.9 29 298-326 122-160 (238)
92 COG0661 AarF Predicted unusual 64.4 16 0.00035 42.2 6.8 92 309-421 285-376 (517)
93 cd05172 PIKKc_DNA-PK DNA-depen 64.1 4.7 0.0001 41.6 2.3 42 299-347 127-168 (235)
94 KOG0904 Phosphatidylinositol 3 64.0 4.7 0.0001 48.8 2.6 36 304-347 919-954 (1076)
95 KOG0905 Phosphoinositide 3-kin 63.2 5.5 0.00012 49.6 3.0 38 302-347 1190-1227(1639)
96 cd01787 GRB7_RA RA (RAS-associ 61.7 40 0.00086 30.4 7.3 53 42-94 4-63 (85)
97 cd00892 PIKKc_ATR ATR (Ataxia 61.6 3.9 8.5E-05 42.1 1.2 42 299-347 130-171 (237)
98 PF09379 FERM_N: FERM N-termin 60.5 14 0.0003 30.9 4.2 41 45-85 1-42 (80)
99 cd05171 PIKKc_ATM Ataxia telan 59.9 3.6 7.8E-05 43.3 0.6 43 298-347 171-213 (279)
100 PF15044 CLU_N: Mitochondrial 59.9 11 0.00023 32.8 3.4 51 57-107 1-57 (76)
101 cd06406 PB1_P67 A PB1 domain i 58.8 33 0.00071 30.6 6.2 43 43-87 5-47 (80)
102 smart00666 PB1 PB1 domain. Pho 58.6 40 0.00086 28.3 6.6 45 42-87 3-47 (81)
103 smart00295 B41 Band 4.1 homolo 57.8 26 0.00057 33.6 6.2 38 40-77 3-40 (207)
104 cd01774 Faf1_like2_UBX Faf1 ik 53.2 96 0.0021 27.4 8.3 52 39-91 3-56 (85)
105 cd01772 SAKS1_UBX SAKS1-like U 52.5 88 0.0019 26.9 7.8 64 41-105 5-77 (79)
106 KOG1235 Predicted unusual prot 51.7 9.4 0.0002 44.3 2.2 41 305-349 317-357 (538)
107 PRK06437 hypothetical protein; 49.5 78 0.0017 26.6 6.9 58 43-107 5-62 (67)
108 cd05164 PIKKc Phosphoinositide 49.2 6.1 0.00013 40.3 0.3 43 299-348 122-164 (222)
109 smart00455 RBD Raf-like Ras-bi 49.0 52 0.0011 28.1 5.8 50 44-93 3-54 (70)
110 cd01767 UBX UBX (ubiquitin reg 49.0 94 0.002 26.3 7.4 51 41-92 3-55 (77)
111 cd05170 PIKKc_SMG1 Suppressor 48.5 6.8 0.00015 41.9 0.5 42 299-347 200-241 (307)
112 PF14453 ThiS-like: ThiS-like 47.3 56 0.0012 27.4 5.5 55 41-107 1-55 (57)
113 cd00754 MoaD Ubiquitin domain 46.7 66 0.0014 26.7 6.1 54 52-106 17-74 (80)
114 KOG3206 Alpha-tubulin folding 45.2 49 0.0011 34.5 5.9 53 56-108 18-81 (234)
115 PRK08364 sulfur carrier protei 44.9 1.1E+02 0.0024 25.8 7.1 54 49-107 10-65 (70)
116 KOG4250 TANK binding protein k 43.8 27 0.00058 41.9 4.3 42 47-88 321-362 (732)
117 cd01770 p47_UBX p47-like ubiqu 42.1 1.4E+02 0.0029 26.0 7.4 53 41-93 5-60 (79)
118 PRK12540 RNA polymerase sigma 40.4 75 0.0016 30.9 6.3 55 385-453 104-158 (182)
119 cd06407 PB1_NLP A PB1 domain i 38.6 80 0.0017 27.8 5.5 35 44-78 2-37 (82)
120 cd05992 PB1 The PB1 domain is 38.2 75 0.0016 26.5 5.1 60 43-105 3-63 (81)
121 cd01773 Faf1_like1_UBX Faf1 ik 37.2 1.2E+02 0.0026 27.0 6.4 64 41-105 6-78 (82)
122 cd01760 RBD Ubiquitin-like dom 34.9 92 0.002 27.0 5.2 44 43-86 2-45 (72)
123 PF14533 USP7_C2: Ubiquitin-sp 33.4 37 0.00079 34.5 3.0 31 49-79 131-161 (213)
124 PLN02799 Molybdopterin synthas 32.1 1.2E+02 0.0025 25.8 5.4 65 41-106 2-76 (82)
125 cd01777 SNX27_RA Ubiquitin dom 30.7 83 0.0018 28.6 4.4 41 43-83 4-44 (87)
126 smart00144 PI3K_rbd PI3-kinase 30.2 2.6E+02 0.0056 25.6 7.7 66 41-106 18-102 (108)
127 cd05163 TRRAP TRansformation/t 30.2 19 0.00042 37.6 0.4 42 299-347 145-186 (253)
128 PF00564 PB1: PB1 domain; Int 30.1 1.7E+02 0.0038 24.4 6.1 39 49-87 9-48 (84)
129 cd06410 PB1_UP2 Uncharacterize 30.1 1.6E+02 0.0034 27.0 6.1 40 45-85 17-56 (97)
130 cd01768 RA RA (Ras-associating 29.9 2.3E+02 0.005 24.1 6.9 28 50-77 12-39 (87)
131 PF00788 RA: Ras association ( 29.4 2.6E+02 0.0055 23.5 7.1 53 43-95 5-69 (93)
132 PF14836 Ubiquitin_3: Ubiquiti 29.0 89 0.0019 28.3 4.3 57 51-108 14-81 (88)
133 cd06396 PB1_NBR1 The PB1 domai 27.5 1.5E+02 0.0032 26.5 5.4 45 44-94 2-49 (81)
134 PF10446 DUF2457: Protein of u 26.0 2.2E+02 0.0047 32.8 7.5 17 582-598 181-197 (458)
135 PF08671 SinI: Anti-repressor 25.8 91 0.002 23.1 3.1 22 406-427 7-28 (30)
136 PRK04171 ribosome biogenesis p 24.3 1.4E+02 0.0031 31.2 5.4 61 11-84 65-130 (222)
137 COG5032 TEL1 Phosphatidylinosi 24.2 26 0.00056 46.8 0.0 43 298-347 1932-1974(2105)
138 cd06408 PB1_NoxR The PB1 domai 24.0 2E+02 0.0044 26.0 5.6 60 42-105 2-62 (86)
139 KOG1639 Steroid reductase requ 24.0 1.4E+02 0.003 32.2 5.2 65 41-105 1-76 (297)
140 TIGR01682 moaD molybdopterin c 23.7 3.5E+02 0.0075 22.9 6.8 57 49-106 13-74 (80)
141 PF00794 PI3K_rbd: PI3-kinase 23.6 1.2E+02 0.0026 27.2 4.2 67 40-106 16-100 (106)
142 KOG0892 Protein kinase ATM/Tel 22.2 29 0.00062 46.9 -0.1 42 299-347 2616-2657(2806)
143 TIGR02952 Sig70_famx2 RNA poly 20.9 2.5E+02 0.0054 26.1 5.9 56 382-451 112-167 (170)
144 cd06411 PB1_p51 The PB1 domain 20.9 1.8E+02 0.004 25.9 4.6 36 51-86 7-42 (78)
145 COG4106 Tam Trans-aconitate me 20.6 74 0.0016 33.7 2.5 28 599-626 211-238 (257)
146 PF14847 Ras_bdg_2: Ras-bindin 20.4 1.6E+02 0.0034 27.4 4.3 37 42-78 2-38 (105)
147 TIGR01687 moaD_arch MoaD famil 20.1 5.3E+02 0.011 22.0 7.3 57 49-106 13-82 (88)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-69 Score=552.11 Aligned_cols=283 Identities=48% Similarity=0.741 Sum_probs=260.0
Q ss_pred HHHHHHHHcCCCCccccCccCeEEEEEeCCCceEEEEecCCCCCCCCCCCCcccccccCCCCCCCccccCCcchh-hhhh
Q 006461 152 KDIVKAIKMGVDPIPVNGGLGGAYYFRNSRFENVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKRSVRVGETGIR-EVAA 230 (644)
Q Consensus 152 ~~v~~ai~~Gi~P~~i~~GSgGSYf~~n~~Gk~vaVFKP~DEEP~a~nNPk~f~~r~~g~~g~krG~lvge~a~R-EVAA 230 (644)
.++..|++.|+.|.++..|++|+||+++..|..+|||||+|||||++|||+|......|+||+++||++||+|+| |+||
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~aa 81 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGWIVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAAA 81 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccceeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhhh
Confidence 578899999999999999999999999999988999999999999999999977777888899999999999997 9999
Q ss_pred hhhcCCCCCCCCCceEEEeeccccccCCCCCCcccCCCCCCCccceeeeccccCcccCCCCCCCCCcccccccceeeeEe
Q 006461 231 YLLDHDHFANVPPTALVKIRHSIFNINDGVNGHKTHNKNLVSKIASFQQFIKHNFDASDHGTSSFPVSEVHHIGILDIRI 310 (644)
Q Consensus 231 YLLD~~gf~~VP~T~lV~l~hp~Fn~~~~~~~~~~~~~~~p~KiGSlQ~FV~~d~~a~d~g~~~Fpv~evhKIaILDiri 310 (644)
|||||++|+.||+|.+|+++|++||+++....+.... ..|+||+|+||++ +++.|+++..|+++++|||+||||||
T Consensus 82 yLlD~~~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~---~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~hkivvlD~ri 157 (286)
T KOG2381|consen 82 YLLDHPEFNDVPRTALVKITHFTFNYNAAFLSKRQGK---KSKIGSLQLFVEG-YSAADYGLRRFEAEEVHKIVVLDIRI 157 (286)
T ss_pred hccCccccCCCCceeeEEEeeecccccccceeccccc---ccchhhHHHhhcC-ccccceeEEeccccccceeEEEEEEe
Confidence 9999999999999999999999999998765432211 2899999999999 88999999999999999999999999
Q ss_pred ecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCcCCCCCccccccCCCCCCCCHHHHHHHHcCChhhhHHHHHhhC
Q 006461 311 FNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSDDELEYIRKLDPLSDCEMLRREL 390 (644)
Q Consensus 311 ~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~LD~~~D~~~Lr~~l 390 (644)
+|||||+|||||++.+.. ..-...+|||||||++|+|+||+|++||||++|||+++++|| ||+..|+++||
T Consensus 158 ~NtDRh~~N~lvk~~~~~----~~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~~~r--- 228 (286)
T KOG2381|consen 158 RNTDRHAGNWLVKKEPTL----EQAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCNLLR--- 228 (286)
T ss_pred eccCCCCCceeEEeccCc----ccccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHHHHH---
Confidence 999999999999996532 233455599999999999999999999999999999999999 99999999999
Q ss_pred CcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhccccCCCCCChHHHHHHHHHHHHHH
Q 006461 391 PMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSREFRAGEEEPSELEVVCIEARRLVEE 452 (644)
Q Consensus 391 ~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~~~~~~e~pS~lE~~~~~A~~~~~~ 452 (644)
++.+.|+|+++++|+|+|++++.|||+.+||.+|+|++..+ |.+|.+|.+|.+.+++
T Consensus 229 -~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~----~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 229 -ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD----SKLEQLCVEAKASVVE 285 (286)
T ss_pred -HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh----CccHHHHHhhhhcccC
Confidence 45799999999999999999999999999999999999754 9999999999876653
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=4e-48 Score=388.50 Aligned_cols=192 Identities=23% Similarity=0.290 Sum_probs=166.3
Q ss_pred ccccCccCeEEEEEeCCC--ceEEEEecCCCCCCCCCCCCcccccccCCCCCCCccccCCcchhhhhhhhhcC-CCCCCC
Q 006461 165 IPVNGGLGGAYYFRNSRF--ENVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKRSVRVGETGIREVAAYLLDH-DHFANV 241 (644)
Q Consensus 165 ~~i~~GSgGSYf~~n~~G--k~vaVFKP~DEEP~a~nNPk~f~~r~~g~~g~krG~lvge~a~REVAAYLLD~-~gf~~V 241 (644)
-+|.++||+||+|....| ...|||||+.+| +|+| .|+.||| |.|||||||||+ .||++|
T Consensus 10 gri~~aSN~t~~~~~~~~~~~~~~VYKPv~gE-----rPLW---------DFpdGtL----a~REvAAYlvs~~lGw~~V 71 (253)
T TIGR03843 10 GRLVDASNATLLCEVTLGGVSARAVYKPVRGE-----RPLW---------DFPDGTL----AGREVAAYLVSEALGWGLV 71 (253)
T ss_pred EEEccccceeEEEEEecCCeeEEEEECCcCCc-----cccc---------cCCCCch----HHHHHHHHHHHHHhCCCcC
Confidence 368999999999997655 678999999999 9999 3344888 999999999995 699999
Q ss_pred CCceEEEeeccccccCCCCCCcccCCCCCCCccceeeeccccCcc--------cCCCCCCCCCc----------------
Q 006461 242 PPTALVKIRHSIFNINDGVNGHKTHNKNLVSKIASFQQFIKHNFD--------ASDHGTSSFPV---------------- 297 (644)
Q Consensus 242 P~T~lV~l~hp~Fn~~~~~~~~~~~~~~~p~KiGSlQ~FV~~d~~--------a~d~g~~~Fpv---------------- 297 (644)
|+|++++ +|.|+||+|+||+++.+ ++++++++|+|
T Consensus 72 PpTvlrD---------------------GP~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v~l~h~ 130 (253)
T TIGR03843 72 PPTVLRD---------------------GPFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVHA 130 (253)
T ss_pred CCeeeec---------------------CCCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcceeeccc
Confidence 9999985 58999999999998754 35677888874
Q ss_pred --ccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCcCCCCCccccccCCCCCCCCHHHHHHHH
Q 006461 298 --SEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSDDELEYIR 375 (644)
Q Consensus 298 --~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~ 375 (644)
.++|||||||++|+|+|||+||||+.+ +.+|+|||||||||. +++|+|++|+|+++|||+++++||+
T Consensus 131 d~~~l~riaVfDi~inNaDRk~GhiL~~~--------dg~l~~IDHGl~f~~---~~klrtvlW~wag~Pls~e~l~~i~ 199 (253)
T TIGR03843 131 DHPQLRRMAVFDALVNNADRKGGHVLPGP--------DGRVWGVDHGVCFHV---EPKLRTVLWGWAGEPLPAELLADLA 199 (253)
T ss_pred ccHHHhhhhhheeeeecCCCCCCcEeEcC--------CCcEEEecCceecCC---CCcccccccccccCCCCHHHHHHHH
Confidence 369999999999999999999999987 358999999999999 7889999999999999999999999
Q ss_pred cCChhhhHHHHHhhCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhcc
Q 006461 376 KLDPLSDCEMLRRELPMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSREF 429 (644)
Q Consensus 376 ~LD~~~D~~~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~~ 429 (644)
+|+.+.+ . + |...++..||..||+++..|..
T Consensus 200 ~L~~~l~-~----------~------------l~~~L~~llt~~Ei~Al~~R~~ 230 (253)
T TIGR03843 200 RLRDDLD-G----------D------------LGRELAELLTPEEVAALRRRVD 230 (253)
T ss_pred HHHHhhc-C----------h------------HHHHHHHhCCHHHHHHHHHHHH
Confidence 7776543 1 1 5566677899999999999974
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.62 E-value=1.2e-15 Score=127.52 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=64.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+++.++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999985 999999999964
No 4
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.5e-16 Score=127.01 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=63.5
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|.|.|||++||.+.++++++|+|..+|++|++++||||.||||||.|+|+.||.+ ++..||+||||
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5799999999999999999999999999999999999999999999999999986 89999999986
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.58 E-value=4.2e-15 Score=124.52 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=61.1
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+||||+ +++++++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 7999998 5899999999999999999999999999999999999999999985 99999999994
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.58 E-value=5.3e-15 Score=132.75 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=67.7
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
+++.|+|+|||++|+++.++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|++++||||+
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~ 97 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLV 97 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 78899999999999999999999999999999999999999999999999999999985 99999999995
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.57 E-value=4.5e-15 Score=126.72 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=62.8
Q ss_pred eEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCV-LGMD-LDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt-~~~e-Vd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|||||.+|++ +.++ |++++||++||++|++++|||+++|||+|+|++|+|+.+ ||+++++|||+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLL 72 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEE
Confidence 799999999997 6895 899999999999999999999999999999999999986 99999999995
No 8
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.56 E-value=5.9e-15 Score=122.06 Aligned_cols=65 Identities=25% Similarity=0.397 Sum_probs=62.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|||||.+|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+ +|+++|||||++
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999885 999999999986
No 9
>PTZ00044 ubiquitin; Provisional
Probab=99.56 E-value=8.8e-15 Score=122.06 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=64.1
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|||||.+|++++++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998875 999999999953
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.52 E-value=2.5e-14 Score=119.79 Aligned_cols=65 Identities=12% Similarity=0.269 Sum_probs=62.5
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|||||..|++++++|++++||.+||++|+++.|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999999999985 999999999954
No 11
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.50 E-value=4.5e-14 Score=119.53 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=63.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|+|||..|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.+ ||++++||||-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999985 99999999994
No 12
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.49 E-value=4.8e-14 Score=118.14 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=61.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
+.||+.+|+++.++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|++++||||+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 36899999999999999999999999999999999999999999999999985 99999999995
No 13
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.4e-15 Score=133.50 Aligned_cols=66 Identities=27% Similarity=0.480 Sum_probs=64.2
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|||+|.+|+|++++|++++||..||.+|+.++|||+++|+|+|+|++|+|..+ ||+..+|||++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~ 70 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhh
Confidence 6899999999999999999999999999999999999999999999999999996 99999999995
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.48 E-value=1.3e-13 Score=114.02 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+++.++|+++.||.+||++|+++.|+|+++|||+|+|+.|.|+.+ +|+++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999885 999999999964
No 15
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.47 E-value=1.4e-13 Score=114.97 Aligned_cols=67 Identities=13% Similarity=0.324 Sum_probs=64.1
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNV--PTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGI--P~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+|||.+|+++.++|++++||.+||++|++++|+ |+++|+|+|+|+.|+|+.+ +|+++++||++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 799999999999999999999999999999999999 9999999999999999875 999999999964
No 16
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.47 E-value=1.5e-13 Score=112.63 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+++.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+ +|+++++|||++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 6899999999999999999999999999999999999999999999999999885 999999999975
No 17
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.7e-14 Score=137.33 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=63.9
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|||||++|+++.++|++++||..+|++||+++|||++||||||.|++|+|+++ +|+..+||||+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence 7899999999999999999999999999999999999999999999999999874 99999999995
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.47 E-value=1.4e-13 Score=113.84 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999885 999999999954
No 19
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.44 E-value=2.4e-13 Score=115.65 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=64.3
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+||+..|+++.++|+++.||++||++|+++.|+|+++|||+|+|+.|.|+ + ||+++++|||+.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEe
Confidence 489999999999999999999999999999999999999999999999999988 5 999999999986
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.43 E-value=2.4e-13 Score=113.65 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=60.2
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccC-C----CCCCCCCceeee
Q 006461 43 VFVQTE-TGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKND-L----SAVRNDSPLLLT 106 (644)
Q Consensus 43 IfVKTl-tGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd-~----tgI~~dStLHLv 106 (644)
|+|||. +|+++.++|++++||++||++|++++|||+++|+|+|+|++|+|+ . ++|+++++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 999999999999999999999999999999999999999999887 3 399999999983
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.41 E-value=5.2e-13 Score=110.93 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=61.3
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
+.|+|||.+|+. .++|++++||.+||++|++++|||+++|+|+|+|++|.|+.+ ||++++||||+
T Consensus 1 ~~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCCE-EEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 469999999985 899999999999999999999999999999999999999875 99999999996
No 22
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.40 E-value=4.8e-13 Score=113.93 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEE--EECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSL--TFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRL--IFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+||+..|+++.++|++++||.+||++|+++.|+|+++||| +|+|+.|+|+.+ ||+++++|||+.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence 38999999999999999999999999999999999999999999 999999999875 999999999954
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.34 E-value=2.2e-12 Score=111.41 Aligned_cols=67 Identities=9% Similarity=0.049 Sum_probs=58.7
Q ss_pred eEEEEEeCCCcE--EEEEecCCCCHHHHHHHHHHHhC--CCCCCcEEEECCeEeccCCC------CCCCCCceeeec
Q 006461 41 RRVFVQTETGCV--LGMDLDRSDNAHTVKRRLQLALN--VPTDESSLTFGDMVLKNDLS------AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt--~~~eVd~sdTV~~VKqkIqekeG--IP~eqQRLIFgGr~LeDd~t------gI~~dStLHLvR 107 (644)
+.|+|||++|++ +.++|++++||.+||++|++..+ .|+++|||||.|+.|+|+.+ .+.++.|||||-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 679999999999 55555899999999999999874 45799999999999999975 489999999983
No 24
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.27 E-value=9.9e-12 Score=101.59 Aligned_cols=62 Identities=18% Similarity=0.414 Sum_probs=59.1
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 46 QTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 46 KTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
||.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999988875 999999999954
No 25
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.26 E-value=1.1e-11 Score=101.58 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=61.4
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
++|+||+. |+++.++|+++.||.+||++|++..|+|+++|+|+|+|+.|.|+.+ +|+++++||++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 47999997 9999999999999999999999999999999999999999998874 89999999986
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.26 E-value=2.2e-11 Score=105.70 Aligned_cols=70 Identities=7% Similarity=0.138 Sum_probs=67.4
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
.+..++|+||+.+|+++.|+|.+++++..||++++++.|||+++|||+|+|++|.++.| +++++++||++
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 67789999999999999999999999999999999999999999999999999999886 99999999995
No 27
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.17 E-value=4.8e-11 Score=100.79 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=57.0
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 48 ETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 48 ltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
++|+++.++|++++||.+||++|+...|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEE
Confidence 589999999999999999999999999999999999999999999985 999999999953
No 28
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=2.8e-10 Score=122.84 Aligned_cols=67 Identities=10% Similarity=0.284 Sum_probs=63.7
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALN---VPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeG---IP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+|||+.|+++.|+|++++||.+||++|++..| +|+++|+|||+|+.|+|+.+ +|+++++|+++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999998 99999999999999999985 999999999854
No 29
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.07 E-value=6.3e-13 Score=131.65 Aligned_cols=155 Identities=24% Similarity=0.215 Sum_probs=80.8
Q ss_pred ccccCCcchhhhhhhhhcCC----C-CCCCCCceEEE---------eeccccccCCCCCCc-ccCCCCCCCccceeeecc
Q 006461 217 SVRVGETGIREVAAYLLDHD----H-FANVPPTALVK---------IRHSIFNINDGVNGH-KTHNKNLVSKIASFQQFI 281 (644)
Q Consensus 217 G~lvge~a~REVAAYLLD~~----g-f~~VP~T~lV~---------l~hp~Fn~~~~~~~~-~~~~~~~p~KiGSlQ~FV 281 (644)
.++.++++.+++.+|.+... | ..-||.|.-.. ..++.+++....... .........+.++.|.|+
T Consensus 27 ~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 106 (235)
T PF00454_consen 27 RILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFL 106 (235)
T ss_dssp HHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHH
T ss_pred HHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHH
Confidence 34555666788999988742 2 34566663321 112222211110000 000112357889999999
Q ss_pred ccCcccCCCC-CCCCCcccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCC----CcCCCCCccc
Q 006461 282 KHNFDASDHG-TSSFPVSEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLP----ETLEDPYFEW 356 (644)
Q Consensus 282 ~~d~~a~d~g-~~~Fpv~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP----~~~~d~~f~W 356 (644)
....+++++. ....-+.+++.++|+||+++|.|||.+||||... .+++++||||+||+ ...+...|+|
T Consensus 107 ~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~-------~g~~~hIDfg~~f~~~~~~~~e~vPFrL 179 (235)
T PF00454_consen 107 KSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK-------TGELIHIDFGFIFGGKHLPVPETVPFRL 179 (235)
T ss_dssp HHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET-------TSEEEE--HSSCTTHHHGSSSS--SSTT
T ss_pred hcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc-------cceeeeEEeHHhhhccccCCCCCCCeEe
Confidence 9877765443 2233357899999999999999999999999552 67999999999999 2334455666
Q ss_pred cccCCCCCCCCHHHHHHHHcC----ChhhhHHHHHhhCC
Q 006461 357 IHWPQASIPFSDDELEYIRKL----DPLSDCEMLRRELP 391 (644)
Q Consensus 357 l~WPqA~~PFS~e~leyI~~L----D~~~D~~~Lr~~l~ 391 (644)
-. ..+..+ ++..+...++....
T Consensus 180 T~-------------~~~~~~~~~l~~~~~~g~f~~~~~ 205 (235)
T PF00454_consen 180 TR-------------NMVNAMGGYLGPSGVEGLFRSSCE 205 (235)
T ss_dssp HH-------------HHHHHTTTSSSTSHHHHHHHHHHH
T ss_pred CH-------------HHHHHHhccCCCchhHhHHHHHHH
Confidence 43 444444 88888888887753
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.06 E-value=4.5e-10 Score=89.08 Aligned_cols=60 Identities=18% Similarity=0.371 Sum_probs=54.9
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCC
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDS 101 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dS 101 (644)
|+|+||+.+ +++.++|++++||++||++|+.+.|+|++.|+|+|+|+.|.|+.+ +|++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999998 799999999999999999999999999999999999999998764 666653
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.03 E-value=6e-10 Score=94.47 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=60.1
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE---CCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF---GDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF---gGr~LeDd~t----gI~~dStLHLv 106 (644)
+.|.||- .|+++.++|++++||++||++|++..|+|+++|+|+| +|+.|.|+.+ +|.+++.|+|+
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4688886 8999999999999999999999999999999999996 8999999885 89999999986
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.02 E-value=2.1e-10 Score=98.35 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHH--hCCC-CCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 59 RSDNAHTVKRRLQLA--LNVP-TDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 59 ~sdTV~~VKqkIqek--eGIP-~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.++||.+||++|+++ +|++ +++|||||+|++|+|+.+ +|+++++|||||
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 578999999999999 4675 899999999999999986 999999999997
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.01 E-value=5.5e-10 Score=95.19 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=55.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEec-cCCC----CCC-CCCceee
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLK-NDLS----AVR-NDSPLLL 105 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~Le-Dd~t----gI~-~dStLHL 105 (644)
|.=|...|.+++++|++++||++||++|++++|||+++||| |+|+.|. |+.+ +++ +|++|||
T Consensus 5 ~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 5 VEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred EeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 44466789999999999999999999999999999999999 9999996 4453 888 8899998
No 34
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.95 E-value=9.9e-10 Score=120.50 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=68.9
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeecccccccC
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTRNYLHRSS 114 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvRn~ihRSs 114 (644)
..++|.|||..+ +..|.|..+.||.++|+.|+..+++++|+|+|||.||.|+|+.+ +|++|.|||||+....|..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 458899999998 88999999999999999999999999999999999999999886 9999999999985555554
Q ss_pred C
Q 006461 115 S 115 (644)
Q Consensus 115 s 115 (644)
.
T Consensus 93 ~ 93 (493)
T KOG0010|consen 93 G 93 (493)
T ss_pred C
Confidence 4
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.77 E-value=2e-08 Score=80.57 Aligned_cols=62 Identities=24% Similarity=0.459 Sum_probs=58.3
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 45 VQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 45 VKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
||..+|+++.+++.++.||++||++|++..|+|++.|+|+|+|+.|+|+.+ ++.++++||++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 788899999999999999999999999999999999999999999988774 89999999985
No 36
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.73 E-value=4.9e-08 Score=77.20 Aligned_cols=66 Identities=26% Similarity=0.461 Sum_probs=62.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+++|+|..|+++.++|.++++|..+|.+|+...|+|..+|+|.|+|+.|.|+.+ +|...+++||+.
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVL 70 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEE
Confidence 379999999999999999999999999999999999999999999999998874 899999999964
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.67 E-value=8.6e-08 Score=79.28 Aligned_cols=66 Identities=9% Similarity=0.199 Sum_probs=61.3
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPT-DESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~-eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|+|++.+|+.+.+.|.++.++..|+++++++.|+|+ ++.+|+|.|+.|..+.| +++++++|+++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 68999999999999999999999999999999999999 99999999999998887 99999999985
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.65 E-value=3.6e-08 Score=90.54 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=58.9
Q ss_pred CceEEEEEeCCCcEEE-EEecCCCCHHHHHHHHH-----HHhCCC--CCCcEEEECCeEeccCCC----C------CCCC
Q 006461 39 GRRRVFVQTETGCVLG-MDLDRSDNAHTVKRRLQ-----LALNVP--TDESSLTFGDMVLKNDLS----A------VRND 100 (644)
Q Consensus 39 d~~qIfVKTltGkt~~-~eVd~sdTV~~VKqkIq-----ekeGIP--~eqQRLIFgGr~LeDd~t----g------I~~d 100 (644)
+..-|..|-.+|..|. +.+++++||..||++|+ .++|+| +++|+|||.|++|+|+.+ + +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 3466888888997664 58899999999999999 667787 999999999999999986 5 7788
Q ss_pred Cceee-ec
Q 006461 101 SPLLL-TR 107 (644)
Q Consensus 101 StLHL-vR 107 (644)
.|+|| +|
T Consensus 83 ~TmHvvlr 90 (113)
T cd01814 83 ITMHVVVQ 90 (113)
T ss_pred eEEEEEec
Confidence 99999 45
No 39
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.41 E-value=4.7e-07 Score=81.80 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=51.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCC-C----CCCCCCceeee
Q 006461 51 CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDL-S----AVRNDSPLLLT 106 (644)
Q Consensus 51 kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~-t----gI~~dStLHLv 106 (644)
+..++.|.+++||+.||.+|+.++++||++|+|+|+|+.|.||. + ||..+|+|+|+
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEE
Confidence 35567899999999999999999999999999999999998876 3 99999999995
No 40
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.39 E-value=5.4e-07 Score=95.38 Aligned_cols=65 Identities=15% Similarity=0.365 Sum_probs=60.1
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCcEEEECCeEeccCCC----CCCCCCceee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALN--VPTDESSLTFGDMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeG--IP~eqQRLIFgGr~LeDd~t----gI~~dStLHL 105 (644)
|.|+|||+.|.+|+++|.+++||..||.+|+...| .|.++|.|||.|+.|.|+.+ +|..+.-|-+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEE
Confidence 68999999999999999999999999999999988 99999999999999999986 7877776555
No 41
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.5e-06 Score=102.18 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=62.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
..|.|||++.++.+|-|..-+||.++|..|.++.+|+.+.|||||+|++|.||++ +| +|-|||||-
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeec
Confidence 3489999999999999999999999999999999999999999999999999985 88 999999985
No 42
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.18 E-value=7.5e-06 Score=71.07 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=53.3
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEE-EECCe-----EeccCC-C----CCCCCCceeeec
Q 006461 42 RVFVQTET-GCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSL-TFGDM-----VLKNDL-S----AVRNDSPLLLTR 107 (644)
Q Consensus 42 qIfVKTlt-Gkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRL-IFgGr-----~LeDd~-t----gI~~dStLHLvR 107 (644)
.|+|++.. .+.....+.++.||.+||++|+...|+|+..||| +|.|+ .|.||. + ++++|++||++-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 56777643 3444555999999999999999999999999999 58877 575554 2 999999999974
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.17 E-value=3.8e-06 Score=88.97 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=57.9
Q ss_pred eEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCcEEEEC-------CeEeccCCC----CCCCCCceee
Q 006461 41 RRVFVQTETGCVL---GMDLDRSDNAHTVKRRLQLALNV-PTDESSLTFG-------DMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 41 ~qIfVKTltGkt~---~~eVd~sdTV~~VKqkIqekeGI-P~eqQRLIFg-------Gr~LeDd~t----gI~~dStLHL 105 (644)
|+|.||+.+|+.+ +++|+++.||++||++|+++.++ ++++|||++. |..|.|+.+ |++++++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6799999999998 79999999999999999999987 8899999983 347887764 8899999888
Q ss_pred e
Q 006461 106 T 106 (644)
Q Consensus 106 v 106 (644)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.68 E-value=0.00019 Score=53.01 Aligned_cols=61 Identities=16% Similarity=0.362 Sum_probs=54.3
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 46 QTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 46 KTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
+..+|....+.+.+..||++||++|+++.|++++.|.|+++|..+.+... ++.++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 33478999999999999999999999999999999999999999987763 78899999885
No 45
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00012 Score=79.69 Aligned_cols=173 Identities=22% Similarity=0.247 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCCCccccCccCeE---EEEEeCCCceEEEEecC----CCCCCCCCCCCcccccccCCCCCCCccccC
Q 006461 149 KMVKDIVKAIKMGVDPIPVNGGLGGA---YYFRNSRFENVAIVKPT----DEEPFAPNNPKGFVGKALGQPGLKRSVRVG 221 (644)
Q Consensus 149 ~lv~~v~~ai~~Gi~P~~i~~GSgGS---Yf~~n~~Gk~vaVFKP~----DEEP~a~nNPk~f~~r~~g~~g~krG~lvg 221 (644)
+++..+..|+..--. +.+.-+-+|| ..++=++ ..-+||||. |+|. -|-.|. ||-|
T Consensus 151 ~~~~alL~~l~~~pI-~~v~v~~~GtqLKlll~~~~-~~KavfKPmR~~Rd~~~----~~~yfs-------~~dR----- 212 (486)
T KOG3829|consen 151 QSMGALLHALRTEPI-TRVSVLGRGTQLKLLLRLSH-QQKVVFKPMRYPRDEVI----DGMYYS-------GFDR----- 212 (486)
T ss_pred hhHHHHHHHhhcCcc-eEEeecCCceEEEEEEEecC-CceeeeccccCCccccC----CCcccc-------cccc-----
Confidence 777778888875322 2455566676 4444444 446899976 4442 111232 2222
Q ss_pred CcchhhhhhhhhcC-CCCCCCCCceEE--Eeec-----------cccccCCCCC------C----cc--cCCCCCCCccc
Q 006461 222 ETGIREVAAYLLDH-DHFANVPPTALV--KIRH-----------SIFNINDGVN------G----HK--THNKNLVSKIA 275 (644)
Q Consensus 222 e~a~REVAAYLLD~-~gf~~VP~T~lV--~l~h-----------p~Fn~~~~~~------~----~~--~~~~~~p~KiG 275 (644)
---||||+-||+ -||..+|||+=+ .++- .+|+..-..+ + .. ..=.......|
T Consensus 213 --HnAEiAAFHLDRiL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~~avCg~pdmlEG 290 (486)
T KOG3829|consen 213 --HNAEVAAFHLDRVLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTEEAVCGDPDMLEG 290 (486)
T ss_pred --cchhhhhhhhhhhhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCcccccCCcccccc
Confidence 126999999998 589999999743 3322 1233222111 1 10 11123478899
Q ss_pred eeeeccccCcccCC-CCCC------------CC--------------C------cccccccceeeeEeecCCCCCCceEE
Q 006461 276 SFQQFIKHNFDASD-HGTS------------SF--------------P------VSEVHHIGILDIRIFNTDRHAGNLLV 322 (644)
Q Consensus 276 SlQ~FV~~d~~a~d-~g~~------------~F--------------p------v~evhKIaILDiri~NtDRh~GNiLV 322 (644)
|+|.|+++...... ..++ .+ | +-++-.|+||||+|.|.|||-=--.-
T Consensus 291 S~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLiGN~DRHHYEtF~ 370 (486)
T KOG3829|consen 291 SLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLIGNMDRHHYETFE 370 (486)
T ss_pred eEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 99999996332211 0000 00 0 13678899999999999999643221
Q ss_pred eeeCCCCCCCceEEEeecCcccCCC
Q 006461 323 RKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 323 ~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.. .+..-++-+|||=+|-.
T Consensus 371 ~f------~d~s~~ihLDngr~FGr 389 (486)
T KOG3829|consen 371 VF------GDLSFLIHLDNGRAFGR 389 (486)
T ss_pred cc------CCcceEEEeccccccCC
Confidence 11 12467889999998865
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.47 E-value=0.00045 Score=59.87 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=51.3
Q ss_pred EEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC----C---eEeccCC-C----CCCCCCceeeec
Q 006461 42 RVFVQTETG--CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG----D---MVLKNDL-S----AVRNDSPLLLTR 107 (644)
Q Consensus 42 qIfVKTltG--kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg----G---r~LeDd~-t----gI~~dStLHLvR 107 (644)
.|+|.+..- +.....+.++.||++||++|+...|+|+..|+|.+. + ..|.|+. + +++++.+||++-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 567776555 488899999999999999999999999999999765 2 2344444 2 999999999963
No 47
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.25 E-value=0.0016 Score=60.07 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=47.7
Q ss_pred ceEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHH-----h--CCCCCCcEEEECCeEeccCCC----CCCCC------C
Q 006461 40 RRRVFVQTETGC-VLGMDLDRSDNAHTVKRRLQLA-----L--NVPTDESSLTFGDMVLKNDLS----AVRND------S 101 (644)
Q Consensus 40 ~~qIfVKTltGk-t~~~eVd~sdTV~~VKqkIqek-----e--GIP~eqQRLIFgGr~LeDd~t----gI~~d------S 101 (644)
.+.|..+-.+|+ +-.+.+++++||.+||++|... . -..+.+.||||.|+.|+|+.+ .+.-+ .
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 345666677999 8889999999999999999975 1 123357899999999999885 34332 3
Q ss_pred ceeee
Q 006461 102 PLLLT 106 (644)
Q Consensus 102 tLHLv 106 (644)
|+|||
T Consensus 82 vmHlv 86 (111)
T PF13881_consen 82 VMHLV 86 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 79994
No 48
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.21 E-value=0.00098 Score=61.93 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=48.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CC-------CCCCceee-ec
Q 006461 52 VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AV-------RNDSPLLL-TR 107 (644)
Q Consensus 52 t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI-------~~dStLHL-vR 107 (644)
++-++++++.||.+||++|+.-...|+++|||+-.+..|+|+.+ |+ ++.++|-| +|
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 44459999999999999999999999999999966788999885 77 77899988 55
No 49
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.18 E-value=0.00092 Score=56.85 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=48.9
Q ss_pred EEEEEeCCCcEEE-EEec-CCCCHHHHHHHHHHHhC-CCCCCcEEE--ECCeEeccCCC----CCCCCCceee
Q 006461 42 RVFVQTETGCVLG-MDLD-RSDNAHTVKRRLQLALN-VPTDESSLT--FGDMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 42 qIfVKTltGkt~~-~eVd-~sdTV~~VKqkIqekeG-IP~eqQRLI--FgGr~LeDd~t----gI~~dStLHL 105 (644)
.|.+|..+.+.+. ++++ ++.||.+||+.|+++.+ ++++.|||. +.|+.|.|+.+ |+.++++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 3555553314443 4444 88899999999999975 578999995 77999998875 8999999886
No 50
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0063 Score=65.05 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=55.7
Q ss_pred EEEEE---eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 42 RVFVQ---TETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 42 qIfVK---TltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+ |..-..++++|+.+.+|..||+-+++..|+|++|-++||.|+.|.|+-+ .+...|.+|.++
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 45554 4456788899999999999999999999999999999999999998864 456678899864
No 51
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.24 E-value=0.0056 Score=53.27 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=36.9
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC---CeEec--cCCC----CCCCCCceeee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG---DMVLK--NDLS----AVRNDSPLLLT 106 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg---Gr~Le--Dd~t----gI~~dStLHLv 106 (644)
.|-|-||+..|- ..|+|++++|+.+||++|++.+++|.+.|.|..+ ...|. ++.+ ||+.|+.|+|.
T Consensus 4 ~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 478899998875 5689999999999999999999999998877433 11221 1222 78888887763
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=95.84 E-value=0.029 Score=48.92 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=53.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC----CeEeccCCC-----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG----DMVLKNDLS-----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg----Gr~LeDd~t-----gI~~dStLHLv 106 (644)
+||.||-..+..+++.|.|...|..||.+|....|++ .+|||.|- .++|-.+.+ ||-.+-.|.|+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 4899999999999999999999999999999999998 69999996 456655554 66655555554
No 53
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=95.72 E-value=0.0019 Score=55.09 Aligned_cols=38 Identities=32% Similarity=0.252 Sum_probs=28.2
Q ss_pred cccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEee
Q 006461 297 VSEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPI 339 (644)
Q Consensus 297 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI 339 (644)
+.++-++.+|+++|+|+|||.+||-+-.. .+.++|.|+
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-----~~~~~LaP~ 77 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-----GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEE-----CCEEEE--B
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-----CCeEEecCC
Confidence 46789999999999999999999998884 246899987
No 54
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.056 Score=60.50 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=58.9
Q ss_pred EEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccC-CC---CCCCCCceeeec
Q 006461 42 RVFVQTETGCVLGMD-LDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKND-LS---AVRNDSPLLLTR 107 (644)
Q Consensus 42 qIfVKTltGkt~~~e-Vd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd-~t---gI~~dStLHLvR 107 (644)
.|.||- .|+++.++ ++..+|+..+|++|....|+||+.|++.+.|..+.|| .- .|+++.+|||+=
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 477776 89999998 9999999999999999999999999999999999988 32 799999999963
No 55
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=93.97 E-value=0.031 Score=57.34 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=62.3
Q ss_pred cccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCcCCCCCccc-cccCCCCCCCCHHHHHHHH
Q 006461 297 VSEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPETLEDPYFEW-IHWPQASIPFSDDELEYIR 375 (644)
Q Consensus 297 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~~~d~~f~W-l~WPqA~~PFS~e~leyI~ 375 (644)
+.++--|+|||++|+|+|||..|..-+- | +..-++-+|||-.|-...-|. +.= ..+-|. -=|...|.+.++
T Consensus 89 LldliDm~IFDFLigN~DRhhye~f~~f----g--n~~~l~~LDNgrgFG~~~~de-~sIlaPL~Qc-C~iRrST~~rL~ 160 (221)
T PF06702_consen 89 LLDLIDMAIFDFLIGNMDRHHYETFNKF----G--NEGFLLHLDNGRGFGRPSHDE-LSILAPLYQC-CRIRRSTWERLQ 160 (221)
T ss_pred hhHHHHHHHHHHHhcCCcchhhhhhhcc----C--CCceEEEEeCCcccCCCCCCc-cchhccHHHh-hhccccHHHHHH
Confidence 4578889999999999999999966322 1 245689999999994321121 111 111222 346666777776
Q ss_pred cCC--hhhhHHHHHhhCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhc
Q 006461 376 KLD--PLSDCEMLRRELPMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSRE 428 (644)
Q Consensus 376 ~LD--~~~D~~~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~ 428 (644)
.|. ...-.+.||+.+ ....+.-=|+-..+.+|..|-
T Consensus 161 ~l~~~~~~Ls~~m~~s~-----------------~~D~l~PvL~e~Hl~AldrRL 198 (221)
T PF06702_consen 161 LLSKGGYRLSDLMRESL-----------------SRDPLAPVLTEPHLEALDRRL 198 (221)
T ss_pred HhccCCCcHHHHHHHHh-----------------ccCccCccCcHHHHHHHHHHH
Confidence 333 222222222211 111233457778888888886
No 56
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.53 Score=43.10 Aligned_cols=70 Identities=7% Similarity=0.171 Sum_probs=63.0
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.-+.+.|+-..|.++.|.|.++.....|+.--.++.|++-.+-|++|+|+.+..+.| +.+++.+|-.+.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 4567788888899999999999999999999999999999999999999999998886 788999888875
No 57
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=92.43 E-value=0.16 Score=54.17 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=33.7
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
+--..|.=|++.=-|||.+||||.. .++++.||=|++|-.
T Consensus 133 ~A~ySvv~YvLGigDRH~~NILi~~--------~G~liHIDFG~~fg~ 172 (293)
T cd05168 133 LAGYSLICYLLQIKDRHNGNILIDN--------DGHIIHIDFGFMLSN 172 (293)
T ss_pred HHHHHHHHHHhhccccCCCceEEcC--------CCCEEEEehHHhhcc
Confidence 4445666788888999999999976 579999999999976
No 58
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=92.00 E-value=0.53 Score=39.90 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=41.4
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceee
Q 006461 47 TETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 47 TltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHL 105 (644)
+.+|+.+.+.|.++.++.+|-++.-+++|+.+++-.|.|+++.|+-+.. |+.+++.|-|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4578999999999999999999999999999999999999999977764 8888888754
No 59
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=91.92 E-value=0.3 Score=52.01 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=33.6
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
+--..|.=|++.=-|||.|||||.. .++++.||-|++|-.
T Consensus 131 lA~ySvv~YiLgigDRH~~NILid~--------~G~liHIDFG~ilg~ 170 (289)
T cd00893 131 MAGYSLLCYLLQIKDRHNGNILLDS--------DGHIIHIDFGFILDS 170 (289)
T ss_pred HHHHHHHHHHhhccccCCCceEECC--------CCCEEEEehHHhhCc
Confidence 4445566688888999999999976 579999999999987
No 60
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=91.78 E-value=0.14 Score=55.92 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=49.2
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCcCCCCCccccccCCCCCCCCHHHHHHHH
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSDDELEYIR 375 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~ 375 (644)
.---+|.=|++.=.|||.||||+.. .++++.||=|+.|-. .++++.+....+-.+|++|.++.|.
T Consensus 195 ~AgYsV~tYiLgIgDRHndNImi~~--------~GhlfHIDFG~iLg~---~~~~g~~~re~~PF~Lt~emv~vm~ 259 (354)
T cd00895 195 CAGCCVATYVLGICDRHNDNIMLKT--------TGHMFHIDFGRFLGH---AQMFGNIKRDRAPFVFTSDMAYVIN 259 (354)
T ss_pred HHHHHHHHHHccccccCCCceeEcC--------CCCEEEEeeHHhcCC---CcccCCCCcCCCCccccHHHHHHhc
Confidence 4455677789999999999999976 679999999999987 4456665554444456787776653
No 61
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.19 E-value=0.44 Score=47.06 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=43.4
Q ss_pred eEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCc-EEEEC-CeEec
Q 006461 41 RRVFVQTETG----CVLGMDLDRSDNAHTVKRRLQLALNVPTDES-SLTFG-DMVLK 91 (644)
Q Consensus 41 ~qIfVKTltG----kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQ-RLIFg-Gr~Le 91 (644)
++|||+|..| .++.+.+.++.||.+|+.+|....++|...| .|.+. +++|.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~ 57 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLS 57 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeC
Confidence 5899999999 6999999999999999999999999998775 45553 55663
No 62
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=90.99 E-value=0.51 Score=42.78 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=39.0
Q ss_pred EEEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHhCCCC--CCcEEEECCeEeccCC
Q 006461 42 RVFVQTET-GCVLGMDLD--RSDNAHTVKRRLQLALNVPT--DESSLTFGDMVLKNDL 94 (644)
Q Consensus 42 qIfVKTlt-Gkt~~~eVd--~sdTV~~VKqkIqekeGIP~--eqQRLIFgGr~LeDd~ 94 (644)
.|.|+-.+ -.-+.++|. .+.||..||++|.+..+=.+ ..+||||+|+.|.|..
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t 59 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHT 59 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccc
Confidence 45555443 345677777 88999999999999983222 3568999999998764
No 63
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=90.70 E-value=0.82 Score=49.26 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=33.0
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
+--.+|.=|++.=-|||.||||+.. .++++.||=|++|-.
T Consensus 152 ~Agysv~tYiLgigDRHn~NILid~--------~G~l~HIDFG~il~~ 191 (311)
T cd05167 152 MAAYSLISYLLQIKDRHNGNIMIDD--------DGHIIHIDFGFIFEI 191 (311)
T ss_pred HHHHHHHHHHhhccccCccceEEcC--------CCCEEEEeeHHhhcc
Confidence 3444566688888999999999987 579999999999965
No 64
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=89.82 E-value=0.55 Score=43.03 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=43.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE-CC-eEeccCCC-----------CCCCCCceee
Q 006461 51 CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF-GD-MVLKNDLS-----------AVRNDSPLLL 105 (644)
Q Consensus 51 kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF-gG-r~LeDd~t-----------gI~~dStLHL 105 (644)
.++-++.+++.||-+||++++.-.--|++.|||+- .. +.|+|..+ +.++.+++-|
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 35666999999999999999999888999999976 33 55666653 5666777766
No 65
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=89.06 E-value=0.12 Score=55.99 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=53.8
Q ss_pred CCCceEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHh-CCC-CCCcEEEECCeEeccCCC------CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETG--CVLGMDLDRSDNAHTVKRRLQLAL-NVP-TDESSLTFGDMVLKNDLS------AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltG--kt~~~eVd~sdTV~~VKqkIqeke-GIP-~eqQRLIFgGr~LeDd~t------gI~~dStLHLv 106 (644)
..-...++||..+- +.+.|..+...||+.||..++... +-| +.+|||||.|+.|.|..| +-....++|||
T Consensus 6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 44456788887654 578888999999999999988763 112 258999999999999887 22346788887
Q ss_pred c
Q 006461 107 R 107 (644)
Q Consensus 107 R 107 (644)
.
T Consensus 86 c 86 (391)
T KOG4583|consen 86 C 86 (391)
T ss_pred c
Confidence 6
No 66
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=88.89 E-value=0.32 Score=53.24 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=34.7
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
..--.+|.=|++.=.|||.||||+.. .++++.||-|++|-.
T Consensus 194 S~AgysvvtYiLGigDRHn~NILi~~--------~G~~~HIDFG~ilg~ 234 (354)
T cd05177 194 SCAGWCVVTFILGVCDRHNDNIMLTH--------SGHMFHIDFGKFLGH 234 (354)
T ss_pred HHHHHHHHHHHhcccCcCCCceeEcC--------CCCEEEEehHHhcCC
Confidence 34456677789999999999999976 579999999999976
No 67
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.58 E-value=0.47 Score=56.05 Aligned_cols=113 Identities=23% Similarity=0.317 Sum_probs=66.8
Q ss_pred cceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCcCCCCCccccccCCCCCCCCHHHHHHHHcCChhhh
Q 006461 303 IGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSDDELEYIRKLDPLSD 382 (644)
Q Consensus 303 IaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~LD~~~D 382 (644)
-.+.=|++==-|||.||||+.. ++||+.||-|+-|-.+...--|+. |-.-|+.|.++.+--||.+.=
T Consensus 690 YSLvcYlLQvKDRHNGNILiD~--------EGHIIHIDFGFmLsnsPgnvgFEs-----APFKLT~EylEvmgG~~~d~F 756 (847)
T KOG0903|consen 690 YSLVCYLLQVKDRHNGNILIDE--------EGHIIHIDFGFMLSNSPGNVGFES-----APFKLTTEYLEVMGGLDSDMF 756 (847)
T ss_pred HHHHHHhhhcccccCCceEecC--------CCCEEEEeeeeEecCCCCCccccc-----CchhhHHHHHHHhcCCcHHHH
Confidence 3455577777899999999965 789999999999987543323443 333445555555544443311
Q ss_pred H---H-HHHhhCCcchHHHHHHHHHhHHHHHHHHHc---CCCHHHHHHhHhhccc
Q 006461 383 C---E-MLRRELPMIREACLRVLVLCTIFLKEAAEF---GLCLSEIGEMMSREFR 430 (644)
Q Consensus 383 ~---~-~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~---gLtl~eIg~~m~R~~~ 430 (644)
- . +||.-+ .+|.-.-|+..++.+ +|.|-.+ .--...|..+..|--.
T Consensus 757 dyfK~L~l~gf~-a~RKhadrIv~lvEi-Mq~~S~~pCF~aG~~Ti~nL~~RFhL 809 (847)
T KOG0903|consen 757 DYFKSLMLQGFM-ALRKHADRIVLLVEI-MQDGSGMPCFRAGERTIQNLRQRFHL 809 (847)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH-hhccCCCcccccChHHHHHHHHHhcc
Confidence 0 1 222222 345555666667666 5653322 1224567777777643
No 68
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=86.83 E-value=0.66 Score=50.70 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=34.6
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
..--.+|.=|++.=-|||.||||+.. .++++-||-|++|-.
T Consensus 193 S~A~ysvv~YiLgigDRH~~NILl~~--------~G~l~HIDFG~~lg~ 233 (353)
T cd05166 193 SCAGCCVATYVLGICDRHNDNIMLTK--------SGHMFHIDFGKFLGH 233 (353)
T ss_pred HHHHHHHHHHHhhccccCCCceEECC--------CCCEEEEeeHHhccc
Confidence 34556677789999999999999976 568999999999965
No 69
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=84.44 E-value=0.4 Score=52.64 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=33.1
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.--.+|.=|++.=.|||.|||||.. .++++.||-|++|-.
T Consensus 204 ~AgYsV~tYiLGIgDRHndNImi~~--------~G~lfHIDFG~ilg~ 243 (365)
T cd00894 204 CAGYCVATFVLGIGDRHNDNIMITE--------TGNLFHIDFGHILGN 243 (365)
T ss_pred hHHHHHHHHhccccCccccceeEcC--------CCCEEEEeeHHhhCC
Confidence 3344556688999999999999976 579999999999954
No 70
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=83.33 E-value=0.4 Score=52.69 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=33.7
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.--.+|.=|++.=-|||.||||+.. .++++.||-|++|-.
T Consensus 204 ~AgysvvtYiLGigDRH~~NILi~~--------~G~l~HIDFG~ilg~ 243 (366)
T cd05165 204 CAGYCVATFVLGIGDRHNDNIMVKE--------TGQLFHIDFGHILGN 243 (366)
T ss_pred HHHHHHHHHHhhccccCCcceEEcC--------CCCEEEEehHHhhcc
Confidence 4456677788999999999999976 579999999999943
No 71
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=83.26 E-value=0.45 Score=52.33 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=33.7
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.---+|.=|++.=.|||.|||||.. .++++.||=|++|-.
T Consensus 203 ~AgYsV~tYiLGIgDRHndNImi~~--------~G~l~HIDFG~iLg~ 242 (366)
T cd05175 203 CAGYCVATFILGIGDRHNSNIMVKD--------DGQLFHIDFGHFLDH 242 (366)
T ss_pred HHHHHHHHHHhcccccCccceeEcC--------CCCEEEEehHHhhcC
Confidence 3445667788999999999999976 679999999999955
No 72
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=83.24 E-value=0.44 Score=52.26 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=33.2
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.--..|.=|++.=-|||.|||||.. .++++.||-|++|-.
T Consensus 200 ~AgysVvtYiLGIGDRHn~NILi~~--------~G~l~HIDFG~ilg~ 239 (361)
T cd05174 200 CAGYCVATYVLGIGDRHSDNIMIRE--------SGQLFHIDFGHFLGN 239 (361)
T ss_pred HHHHHHHHHHhcccCcCccceeEcC--------CCCEEEEehHHhhcC
Confidence 3445667788888999999999976 579999999999954
No 73
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=82.77 E-value=2.5 Score=46.24 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=34.6
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--.+|+=|++.=-|||.||||+.. .++++.||-|++|-.
T Consensus 194 S~A~ysv~~YiLgigDRH~~NILi~~--------~G~~~HIDFG~ilg~ 234 (352)
T cd00891 194 SCAGYCVATYVLGIGDRHNDNIMLTK--------TGHLFHIDFGHFLGN 234 (352)
T ss_pred hHHHHHHHHHHccccccCCCceEECC--------CCCEEEEehHHhhcc
Confidence 45556777899999999999999975 579999999999954
No 74
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=82.61 E-value=1.1 Score=49.03 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=34.8
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--.+|.=|++.=.|||.||||+.. .++++.||=|++|-.
T Consensus 193 S~AgYsv~tYiLGIgDRHn~NILi~~--------~Ghl~HIDFG~ilg~ 233 (353)
T cd05176 193 SCAGCCVATYVLGICDRHNDNIMLRS--------TGHMFHIDFGKFLGH 233 (353)
T ss_pred HHHHHHHHhhhccccCcCCcceEEcC--------CCCEEEEeeHHhcCC
Confidence 34556677899999999999999976 579999999999965
No 75
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=81.54 E-value=0.51 Score=51.77 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=33.3
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.--.+|.=|++.=-|||.|||||.. .++++.||=|++|-.
T Consensus 200 ~AgYsvvtYILGIGDRHn~NILi~~--------~G~l~HIDFG~ilg~ 239 (362)
T cd05173 200 CAGYCVATYVLGIGDRHSDNIMVRK--------NGQLFHIDFGHILGN 239 (362)
T ss_pred HHHHHHHHHHhhccccCCCceEECC--------CCCEEEEehHHhhcc
Confidence 3445667788889999999999975 579999999999954
No 76
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=6.9 Score=35.74 Aligned_cols=88 Identities=9% Similarity=0.094 Sum_probs=67.4
Q ss_pred cCCCCCCCCCccccCCCCCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----
Q 006461 20 TPLSGEYHGNKRVEGKQPAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS---- 95 (644)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t---- 95 (644)
++.+.|+..+...+.+..+.-+.+.|=-..|.++-|.|..+.+...+-.-...+.|-....-|++|+|+.++-+++
T Consensus 4 S~~~~e~kt~~~p~vkp~t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dl 83 (103)
T COG5227 4 SDSGSEFKTNENPLVKPITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDL 83 (103)
T ss_pred cccchhhccccCccccccccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhc
Confidence 3456778777777777333344445545589999999999999998888888889988889999999999988876
Q ss_pred CCCCCCceeeec
Q 006461 96 AVRNDSPLLLTR 107 (644)
Q Consensus 96 gI~~dStLHLvR 107 (644)
+.+++..|..|+
T Consensus 84 dmEdnd~iEav~ 95 (103)
T COG5227 84 DMEDNDEIEAVT 95 (103)
T ss_pred CCccchHHHHHH
Confidence 666666666554
No 77
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=80.92 E-value=0.58 Score=51.08 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=34.6
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+.-..|.=|++.=.|||.||||+.. .++++.||=|++|-.
T Consensus 193 S~A~ysvv~YiLGigDRH~~NILi~~--------~G~~~HIDFG~ilg~ 233 (350)
T cd00896 193 SCAGYCVITYILGVGDRHLDNLLLTK--------DGKLFHIDFGYILGR 233 (350)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEcC--------CCCEEEEEhHHhhCC
Confidence 34556677789999999999999975 579999999999965
No 78
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=80.61 E-value=12 Score=31.66 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-cEEEE--CCeEeccCC--C----CCCCCCceee
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDE-SSLTF--GDMVLKNDL--S----AVRNDSPLLL 105 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eq-QRLIF--gGr~LeDd~--t----gI~~dStLHL 105 (644)
++...|-||..+|+.+.-...+++||..|.+-|......+... -.|+- --+.|.++. + ++...++|++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4557899999999999999999999999999998887666543 57763 466675543 3 5566666665
No 79
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.08 E-value=2.3 Score=43.92 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=55.6
Q ss_pred CCCceEEEEE---eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCC----CCCCCCCceee
Q 006461 37 PAGRRRVFVQ---TETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDL----SAVRNDSPLLL 105 (644)
Q Consensus 37 ~sd~~qIfVK---TltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~----tgI~~dStLHL 105 (644)
++...+.+.| |.+++.+.+-+...+||.++|.+++.++|+.+-.|+++|.|..|-+.. |+|++++---|
T Consensus 140 p~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 140 PSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred CCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 4444455544 558999999999999999999999999999988999999999997654 58888854333
No 80
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=76.16 E-value=0.91 Score=53.93 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=33.8
Q ss_pred cccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 301 HHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 301 hKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
---.|+-|++.=-|||.|||||.. +++|+-||-|+.|-.
T Consensus 1138 AGYsViTYILgIgDRHngNILId~--------dGhLfHIDFGFILg~ 1176 (1374)
T PTZ00303 1138 KLFLLLNYIFSIGDRHKGNVLIGT--------NGALLHIDFRFIFSE 1176 (1374)
T ss_pred HHHHHHHHHhccCcccCCceeEcC--------CCCEEEEecceeecC
Confidence 344677788999999999999988 679999999999886
No 81
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.07 E-value=1.4 Score=37.95 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=41.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS 95 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t 95 (644)
+|.+.---||++.+.+.+.|||+++|.-|+...|..++...|--....++|.++
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~ 56 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHIT 56 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccc
Confidence 455555679999999999999999999999999998887666433445555553
No 82
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=75.90 E-value=5.8 Score=33.96 Aligned_cols=65 Identities=26% Similarity=0.332 Sum_probs=44.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCc------EEE-ECCeEeccCCC----CCCCCCceee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDES------SLT-FGDMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQ------RLI-FgGr~LeDd~t----gI~~dStLHL 105 (644)
.+|.|....|+.+-+.+-...+|..+...|.+..+.+.... +|. -+|..|.++.+ +|.+|++|+|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 46888876689999999999999999999999988754332 344 45889998886 9999999987
No 83
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=75.27 E-value=9 Score=34.35 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=34.3
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTD 79 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~e 79 (644)
..+|+..|+++.|.+.++..+..|++.|.+++|+..+
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 5688999999999999999999999999999999864
No 84
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=73.82 E-value=2 Score=43.36 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=35.9
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--..++=|++.=.|||.+|||+... .++++-||=|++|-.
T Consensus 119 SlA~~s~~~YilglgDRh~~NIli~~~-------~G~~~hIDfg~~~~~ 160 (219)
T cd00142 119 SLAGYSVAGYILGIGDRHPDNIMIDLD-------TGKLFHIDFGFIFGK 160 (219)
T ss_pred HHHHHHHHHHHhccCCCCCccEEEECC-------CCeEEEEeeHHhhCc
Confidence 456677788999999999999999883 569999999999965
No 85
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=71.48 E-value=1.4 Score=44.02 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=36.4
Q ss_pred ccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 298 SEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 298 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
..+--..++-|++.=.|||.+|||+.+ .++++-||=|++|-.
T Consensus 91 ~SlA~~s~~~YilglgDRh~~NIli~~--------~G~v~hIDfg~~~~~ 132 (202)
T smart00146 91 RSCAGYSVITYILGLGDRHNDNIMLDK--------TGHLFHIDFGFILGN 132 (202)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeC--------CCCEEEEechhhhCc
Confidence 356677889999999999999999984 568999999999976
No 86
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=71.18 E-value=1.3 Score=55.52 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=34.9
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCc
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPET 348 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~ 348 (644)
..--+|+-|++.=-|||.||||+.. ++|++.||-|+.|-..
T Consensus 1644 ~A~Ysv~s~lLq~KDRHNGNim~Dd--------~G~~iHIDFGf~~e~s 1684 (1803)
T KOG0902|consen 1644 MAGYSVLSYLLQIKDRHNGNIMIDD--------QGHIIHIDFGFMFESS 1684 (1803)
T ss_pred HHHHHHHHHHcccccccCCceeEcc--------CCCEEEEeeeeEEecC
Confidence 4455678889999999999999976 7899999999998653
No 87
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=71.14 E-value=1.6 Score=49.08 Aligned_cols=40 Identities=33% Similarity=0.316 Sum_probs=32.9
Q ss_pred ccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEee-cC
Q 006461 298 SEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPI-DH 341 (644)
Q Consensus 298 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DH 341 (644)
.++.|..+|.++|+|+|.|+.|+=+-..+ .+.++|.|+ |-
T Consensus 328 ~~~~rr~~fN~LigN~D~H~KN~Sfl~~~----~~~~~LAPaYDi 368 (442)
T PRK09775 328 QRAELLWAFGRLIANTDMHAGNLSFVLSD----GRPLALAPVYDM 368 (442)
T ss_pred HHHHHHHHHhHHhcCCCCCccceEEEECC----CCCeeecchhhc
Confidence 45678899999999999999999887732 246899998 76
No 88
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=70.67 E-value=1.8 Score=45.38 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=34.9
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLP 346 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP 346 (644)
.+--..++=|++.=.|||.+|||+... .++++.||-|.||-
T Consensus 172 S~A~~Sv~~YilglgDRH~~NIll~~~-------tG~v~HIDfg~~f~ 212 (280)
T cd05169 172 SLAVMSMVGYILGLGDRHPSNIMIDRL-------TGKVIHIDFGDCFE 212 (280)
T ss_pred HHHHHHHHHhheeccCCCcceEEEEcC-------CCCEEEEecHHHHh
Confidence 456677788999999999999999883 56899999999984
No 89
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=70.44 E-value=30 Score=29.53 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=41.8
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEecc
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLKN 92 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~LeD 92 (644)
+.-+|-||..+|+.+......++||.+|.+-|....+.....-.|+-. -+.|.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~ 58 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTK 58 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCcc
Confidence 345799999999999999999999999999996666665555666433 455544
No 90
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.79 E-value=4.3 Score=47.80 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=36.3
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
..---+|.=|+++=.|||.||+|+.+ +++++.||-|+.|-.
T Consensus 685 ScaGYsVitYILGvGDRhldNLllT~--------dGk~FHiDFgyIlGR 725 (843)
T KOG0906|consen 685 SCAGYSVITYILGVGDRHLDNLLLTK--------DGKLFHIDFGYILGR 725 (843)
T ss_pred hhccceeeeeeecccCCCcCceEEcc--------CCcEEEEeeeeeccC
Confidence 44556788899999999999999998 679999999999987
No 91
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=65.75 E-value=6.9 Score=41.02 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=24.8
Q ss_pred ccccccceeeeEeecCCC----------CCCceEEeeeC
Q 006461 298 SEVHHIGILDIRIFNTDR----------HAGNLLVRKLD 326 (644)
Q Consensus 298 ~evhKIaILDiri~NtDR----------h~GNiLV~~~~ 326 (644)
.++-||-+||+.|+|.|| |..|||++..+
T Consensus 122 ~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~~ 160 (238)
T cd05124 122 IQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDIP 160 (238)
T ss_pred HHhhhhheeeeeecCCCCCCccccccCCCcceEEEEccc
Confidence 578999999999999999 56788988743
No 92
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=64.43 E-value=16 Score=42.17 Aligned_cols=92 Identities=24% Similarity=0.236 Sum_probs=59.1
Q ss_pred EeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCcCCCCCccccccCCCCCCCCHHHHHHHHcCChhhhHHHHHh
Q 006461 309 RIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSDDELEYIRKLDPLSDCEMLRR 388 (644)
Q Consensus 309 ri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~LD~~~D~~~Lr~ 388 (644)
=.+=+|=|.|||+|.. +++++-+|||+.=+- ++.+++.+ .+.+-.+..-|.++-++.+..
T Consensus 285 gffHaDpHpGNi~v~~--------~g~i~~lDfGi~g~l---~~~~r~~l---------~~~~~a~~~rD~~~v~~~~~~ 344 (517)
T COG0661 285 GFFHADPHPGNILVRS--------DGRIVLLDFGIVGRL---DPKFRRYL---------AELLLAFLNRDYDRVAELHVE 344 (517)
T ss_pred CccccCCCccceEEec--------CCcEEEEcCcceecC---CHHHHHHH---------HHHHHHHHhhCHHHHHHHHHH
Confidence 3566999999999988 579999999998776 34454432 344445556677777777777
Q ss_pred hCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHH
Q 006461 389 ELPMIREACLRVLVLCTIFLKEAAEFGLCLSEI 421 (644)
Q Consensus 389 ~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eI 421 (644)
.++.=...+...+......+-.-. .|..+.+|
T Consensus 345 ~G~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 376 (517)
T COG0661 345 LGYVPPDTDRDPLAAAIRAVLEPI-YGKPLEEI 376 (517)
T ss_pred hCCCCCccchHHHHHHHHHHHHhh-hCCChhhc
Confidence 665333456666655555444333 44555543
No 93
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=64.06 E-value=4.7 Score=41.61 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=35.1
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--.+++=|++.=.|||.+|||+... .++++-||=|.+|-.
T Consensus 127 S~A~~S~~~YilglgDRH~~NIli~~~-------tG~v~HIDfg~~f~~ 168 (235)
T cd05172 127 SLAAMCVSHWILGIGDRHLSNFLVDLE-------TGGLVGIDFGHAFGT 168 (235)
T ss_pred HHHHHHHHhheeeccCCCcccEEEECC-------CCcEEEEeeHhhhcc
Confidence 455566777999999999999999862 578999999999976
No 94
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=64.04 E-value=4.7 Score=48.83 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=31.4
Q ss_pred ceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 304 GILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 304 aILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
+|--|+++=.|||.+||||+. .+.|+-||-|=.|-.
T Consensus 919 cVATyVLGIgDRHsDNIMvke--------~GqlFHIDFGHiLGh 954 (1076)
T KOG0904|consen 919 CVATYVLGIGDRHSDNIMVKE--------TGQLFHIDFGHILGH 954 (1076)
T ss_pred eeeeeeecccccccCceEEec--------cCcEEEEEhhhhhcc
Confidence 456689999999999999998 578999999988765
No 95
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=63.22 E-value=5.5 Score=49.64 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=32.5
Q ss_pred ccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 302 HIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 302 KIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
--+|--|+++=+|||.+|||.++ .+|++-||-|=-+-+
T Consensus 1190 G~cVaTYVLGIcDRHNDNIMl~~--------sGHmFHIDFGKFLGh 1227 (1639)
T KOG0905|consen 1190 GWCVATYVLGICDRHNDNIMLTK--------SGHMFHIDFGKFLGH 1227 (1639)
T ss_pred cceeeeEeeecccccCCceEEec--------cCcEEEEehhhhcch
Confidence 34678899999999999999999 679999999876654
No 96
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=61.68 E-value=40 Score=30.40 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=40.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC-------CeEeccCC
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG-------DMVLKNDL 94 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg-------Gr~LeDd~ 94 (644)
.|.|-..+|.+-++.|+.++|+.+|=+.+.++.+...+.---+|. .+.++|+.
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE 63 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHE 63 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchH
Confidence 466777899999999999999999999999998776555444444 44555554
No 97
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=61.56 E-value=3.9 Score=42.15 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=34.9
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--.+++=|++.=.|||.+|||+... .++++-||=|.+|-.
T Consensus 130 SlA~~s~~~YilgigDRh~~NIli~~~-------tG~~~HIDfg~~~~~ 171 (237)
T cd00892 130 STAVMSMVGYILGLGDRHGENILFDSN-------TGDVVHVDFNCLFDK 171 (237)
T ss_pred HHHHHHHHHHHhccCCCCcccEEEEcC-------CCcEEEEehHhhhcc
Confidence 344566777888999999999999873 468999999999976
No 98
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=60.49 E-value=14 Score=30.89 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=35.0
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CcEEEE
Q 006461 45 VQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTD-ESSLTF 85 (644)
Q Consensus 45 VKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~e-qQRLIF 85 (644)
|+.++|.+.++.|+++.|+.++=++|..+.||... ---|.|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 67899999999999999999999999999999732 236666
No 99
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=59.94 E-value=3.6 Score=43.33 Aligned_cols=43 Identities=28% Similarity=0.430 Sum_probs=36.0
Q ss_pred ccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 298 SEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 298 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
..+--+.++=|++.=.|||.+|||+... .++++-||-|.||-.
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~~-------tG~v~hiDf~~~f~~ 213 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDEK-------TAEVVHIDLGIAFEQ 213 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEcC-------cCcEEEEechhhhcc
Confidence 3456677788999999999999999873 568999999999955
No 100
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=59.91 E-value=11 Score=32.75 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=38.5
Q ss_pred ecCCCCHHHHHHHHHHHhCC-CCCCcEEEECCeEeccCCC-----CCCCCCceeeec
Q 006461 57 LDRSDNAHTVKRRLQLALNV-PTDESSLTFGDMVLKNDLS-----AVRNDSPLLLTR 107 (644)
Q Consensus 57 Vd~sdTV~~VKqkIqekeGI-P~eqQRLIFgGr~LeDd~t-----gI~~dStLHLvR 107 (644)
|.++++|.+|++-|...... .--.-.|.++|+.|++... ++.++++|+|+-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56889999999998887432 2234578889999976542 788899999964
No 101
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=58.77 E-value=33 Score=30.58 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=36.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD 87 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG 87 (644)
|.|.-- + ++.|.|-++-+..+|.++|.+++.+|+++-.|-|.+
T Consensus 5 vKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 5 VKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 444432 3 999999999999999999999999998888998884
No 102
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=58.57 E-value=40 Score=28.35 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=37.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD 87 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG 87 (644)
.|.|+. .|.+..+.|.+..|-.+|+++|+++++++.....|-|.+
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 455555 678899999999999999999999999886667777764
No 103
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=57.83 E-value=26 Score=33.61 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVP 77 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP 77 (644)
.+.|.|-..+|.+..+.++++.||.+|-+.|..+.||+
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999995
No 104
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=53.18 E-value=96 Score=27.40 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=43.0
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC--eEec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD--MVLK 91 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG--r~Le 91 (644)
+-.+|-||..+|+.+.-....++||+.|..=|.. .+..++..+|+.+= +.+.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~ 56 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLP 56 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCcccc
Confidence 4568999999999999999999999999998864 45556788998874 6664
No 105
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=52.50 E-value=88 Score=26.94 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=45.4
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEeccC---CC----CCCCCCceee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLKND---LS----AVRNDSPLLL 105 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~LeDd---~t----gI~~dStLHL 105 (644)
-+|-||..+|+.+.-....++|+.+|.+-|+...+.+ ..-.|+-. -+.+.++ .+ |+..-++|+|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4799999999999999999999999999998665433 44566544 5556432 22 5555555554
No 106
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=51.67 E-value=9.4 Score=44.28 Aligned_cols=41 Identities=37% Similarity=0.588 Sum_probs=32.6
Q ss_pred eeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCcC
Q 006461 305 ILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPETL 349 (644)
Q Consensus 305 ILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~~ 349 (644)
||.-=...+|=|.|||||++.. .++.+++=.|||++---++
T Consensus 317 If~~GffHaDPHPGNilv~~~~----~~~~~ivllDhGl~~~is~ 357 (538)
T KOG1235|consen 317 IFKTGFFHADPHPGNILVRPNP----EGDEEIVLLDHGLYAVISH 357 (538)
T ss_pred HHhcCCccCCCCCCcEEEecCC----CCCccEEEEcccccccccH
Confidence 5666688999999999999742 4577888899999876643
No 107
>PRK06437 hypothetical protein; Provisional
Probab=49.47 E-value=78 Score=26.61 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=43.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceeeec
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLLTR 107 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHLvR 107 (644)
|+|+ .|+.-.++++...||.+|=++ +|++++.--+..+|..+..+. -+++++.|-+++
T Consensus 5 ~~v~--g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~~~-~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVK--GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLEDH-NVKKEDDVLILE 62 (67)
T ss_pred EEec--CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCce-EcCCCCEEEEEe
Confidence 5555 567788888888888876544 689877767778888887443 488888888875
No 108
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=49.16 E-value=6.1 Score=40.33 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=36.1
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCCc
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPET 348 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~~ 348 (644)
.+--..++=|++.=.|||.+|||+... .++++-||=|.+|-..
T Consensus 122 SlA~~s~~~YvlglgDRh~~NIli~~~-------tG~v~hIDf~~~~~~~ 164 (222)
T cd05164 122 STAVMSIVGYILGLGDRHLDNILIDRE-------TGEVVHIDFGCIFEKG 164 (222)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEECC-------CCcEEEEccHHhhccC
Confidence 455567888999999999999999883 4688999999999763
No 109
>smart00455 RBD Raf-like Ras-binding domain.
Probab=49.02 E-value=52 Score=28.07 Aligned_cols=50 Identities=4% Similarity=-0.053 Sum_probs=41.0
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC--eEeccC
Q 006461 44 FVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD--MVLKND 93 (644)
Q Consensus 44 fVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG--r~LeDd 93 (644)
.|=..+|+...+.|.|+.||.++=++|-++.|+.+++-.+...| +.|+-+
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~ 54 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLN 54 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecC
Confidence 45567899999999999999999999999999998887777643 455433
No 110
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=48.98 E-value=94 Score=26.25 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=39.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEecc
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLKN 92 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~LeD 92 (644)
-+|-||..+|+.+.-....++||.+|.+=|.....- ...-+|+.. -+.|.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~ 55 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTD 55 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCC
Confidence 368999999999999999999999999988766443 345667654 566654
No 111
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=48.47 E-value=6.8 Score=41.92 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=35.5
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--++++=|++.=.|||.+|||+... .++++.||=|.||-.
T Consensus 200 s~A~~s~~~yilglgDRh~~NIli~~~-------tG~v~hiDf~~~f~~ 241 (307)
T cd05170 200 STAVMSMIGYVIGLGDRHLDNVLIDLK-------TGEVVHIDYNVCFEK 241 (307)
T ss_pred HHHHHHHHHHHccCCCCCCccEEEEcC-------CCcEEEEeeHhhhcc
Confidence 456677888999999999999999863 568999999999954
No 112
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=47.26 E-value=56 Score=27.39 Aligned_cols=55 Identities=9% Similarity=0.268 Sum_probs=41.3
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHLvR 107 (644)
|+|+| +|+.+ +++...|+..||+++.. +.--+|++|-+..+|.. +++++.|.|++
T Consensus 1 M~I~v---N~k~~--~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~-L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV---NEKEI--ETEENTTLFELRKESKP------DADIVILNGFPTKEDIE-LKEGDEVFLIK 55 (57)
T ss_pred CEEEE---CCEEE--EcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccc-cCCCCEEEEEe
Confidence 56776 56665 55677899999986543 23378999999998877 88888888875
No 113
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=46.71 E-value=66 Score=26.73 Aligned_cols=54 Identities=6% Similarity=0.096 Sum_probs=39.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCcEEEECCeEeccCCCCCCCCCceeee
Q 006461 52 VLGMDLDRSDNAHTVKRRLQLALNV----PTDESSLTFGDMVLKNDLSAVRNDSPLLLT 106 (644)
Q Consensus 52 t~~~eVd~sdTV~~VKqkIqekeGI----P~eqQRLIFgGr~LeDd~tgI~~dStLHLv 106 (644)
...++++...||.+|.+++.+..+- ....-.+..+|+....+ +-+++++.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~-~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD-TPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC-cccCCCCEEEEe
Confidence 4667887789999999999987542 12234556677777644 358999999886
No 114
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=45.18 E-value=49 Score=34.49 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=42.6
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCcEE-EECC-----eEeccCCC-----CCCCCCceeeecc
Q 006461 56 DLDRSDNAHTVKRRLQLALNVPTDESSL-TFGD-----MVLKNDLS-----AVRNDSPLLLTRN 108 (644)
Q Consensus 56 eVd~sdTV~~VKqkIqekeGIP~eqQRL-IFgG-----r~LeDd~t-----gI~~dStLHLvRn 108 (644)
...+++||.++|.|+....|.+++.-+| +|+| -.|.|+.. +..++--||++-+
T Consensus 18 r~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 18 RLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 4569999999999999999999999988 6775 35555432 6788889999863
No 115
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=44.87 E-value=1.1e+02 Score=25.77 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=38.2
Q ss_pred CCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceeeec
Q 006461 49 TGC--VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLLTR 107 (644)
Q Consensus 49 tGk--t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHLvR 107 (644)
+|+ ...++++...||.++-++ .+++.+.-.+..+|..+..+ +-+++++.|-++.
T Consensus 10 ng~~~~~~~~~~~~~tv~~ll~~----l~~~~~~v~v~vNg~iv~~~-~~l~~gD~Veii~ 65 (70)
T PRK08364 10 IGRGIEKEIEWRKGMKVADILRA----VGFNTESAIAKVNGKVALED-DPVKDGDYVEVIP 65 (70)
T ss_pred eccccceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCC-cCcCCCCEEEEEc
Confidence 566 667788888899988765 47776554556677776443 4488888888764
No 116
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=43.83 E-value=27 Score=41.85 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=38.5
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCe
Q 006461 47 TETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDM 88 (644)
Q Consensus 47 TltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr 88 (644)
+.++..+.+.|+++.|++.++.+|++..|||.+.|.|+|.|.
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~ 362 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGG 362 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecC
Confidence 447888999999999999999999999999999999999864
No 117
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=42.10 E-value=1.4e+02 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=40.2
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCcEEE--ECCeEeccC
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVP-TDESSLT--FGDMVLKND 93 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP-~eqQRLI--FgGr~LeDd 93 (644)
-+|-||..+|+.+...+..++||.+|.+=|....+.+ ...-.|+ |=.+.|.|+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~ 60 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE 60 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC
Confidence 4788999999999999999999999999888765322 2345665 336667654
No 118
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=40.43 E-value=75 Score=30.87 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=42.2
Q ss_pred HHHhhCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhccccCCCCCChHHHHHHHHHHHHHHh
Q 006461 385 MLRRELPMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSREFRAGEEEPSELEVVCIEARRLVEER 453 (644)
Q Consensus 385 ~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~~~~~~e~pS~lE~~~~~A~~~~~~~ 453 (644)
.|+..+..|.+.|-+++.+... .|++..||+++|.-. ++.+...+.+|++.+.+.
T Consensus 104 ~l~~~l~~Lp~~~R~v~~L~~~-------~g~s~~EIA~~Lgis-------~~tV~~~l~RAr~~Lr~~ 158 (182)
T PRK12540 104 EFRAALDKLPQDQREALILVGA-------SGFSYEDAAAICGCA-------VGTIKSRVNRARSKLSAL 158 (182)
T ss_pred HHHHHHHhCCHHHHHHhhHHHH-------cCCCHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHH
Confidence 4555555566888887766544 899999999998765 278899999999998764
No 119
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=38.55 E-value=80 Score=27.83 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=29.3
Q ss_pred EEEe-CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 006461 44 FVQT-ETGCVLGMDLDRSDNAHTVKRRLQLALNVPT 78 (644)
Q Consensus 44 fVKT-ltGkt~~~eVd~sdTV~~VKqkIqekeGIP~ 78 (644)
.||. ..|.++.|.+.++.+...|+++|++++++..
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~ 37 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDD 37 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Confidence 3443 3677889999999999999999999999863
No 120
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=38.23 E-value=75 Score=26.46 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=39.8
Q ss_pred EEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceee
Q 006461 43 VFVQTETGCVLGMDLD-RSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLL 105 (644)
Q Consensus 43 IfVKTltGkt~~~eVd-~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHL 105 (644)
|.|+. .|.+..+.+. ++.|...|+++|.++++++...-.|-|-+.. ++...|.++.-++.
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e--~d~v~l~sd~Dl~~ 63 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDED--GDLVTISSDEDLEE 63 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCC--CCEEEeCCHHHHHH
Confidence 44444 3678888888 9999999999999999987644455555411 12223555555544
No 121
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=37.20 E-value=1.2e+02 Score=26.99 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=47.8
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEeccC---CC----CCCCCCceee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLKND---LS----AVRNDSPLLL 105 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~LeDd---~t----gI~~dStLHL 105 (644)
-+|-||..+|+.+.-....++++..|-.=|+. .|.+++...|+-+ =+.+..+ .+ |+..-++|.+
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 47999999999999999999999999887776 6778888888766 4444322 12 5555555554
No 122
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=34.87 E-value=92 Score=26.98 Aligned_cols=44 Identities=7% Similarity=-0.078 Sum_probs=38.3
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG 86 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg 86 (644)
+.|=..+|..-.+.|.+++||.++=.++-++-|+.++.-.|.+.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 34556789999999999999999999999999999888777555
No 123
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=33.44 E-value=37 Score=34.54 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 006461 49 TGCVLGMDLDRSDNAHTVKRRLQLALNVPTD 79 (644)
Q Consensus 49 tGkt~~~eVd~sdTV~~VKqkIqekeGIP~e 79 (644)
-|-.|.|-|.++.|..++|+||++++|++..
T Consensus 131 hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 131 HGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 4667788999999999999999999999853
No 124
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=32.10 E-value=1.2e+02 Score=25.85 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=41.0
Q ss_pred eEEEEEe------CCC-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCcEEEECCeEeccCCCCCCCCCceeee
Q 006461 41 RRVFVQT------ETG-CVLGMDLDRSDNAHTVKRRLQLALN-VPT--DESSLTFGDMVLKNDLSAVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKT------ltG-kt~~~eVd~sdTV~~VKqkIqekeG-IP~--eqQRLIFgGr~LeDd~tgI~~dStLHLv 106 (644)
|.|.|+. ..| +...+++....||.+|++.|..+.. +.. ..-.+..+|+...++ +-++++++|-++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-AALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-cCcCCCCEEEEe
Confidence 4566663 245 5677788889999999999977641 110 011245566655433 448888888775
No 125
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=30.73 E-value=83 Score=28.56 Aligned_cols=41 Identities=5% Similarity=0.086 Sum_probs=35.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEE
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSL 83 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRL 83 (644)
|-|--.+|.++.+.|..++|...|=+.++.+.|+|.+-+..
T Consensus 4 L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 4 LRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 44445789999999999999999999999999999776544
No 126
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=30.22 E-value=2.6e+02 Score=25.61 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=44.5
Q ss_pred eEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHH----hCC--CCC---------CcEEEECCeEeccCCC---CCCCCC
Q 006461 41 RRVFVQTET-GCVLGMDLDRSDNAHTVKRRLQLA----LNV--PTD---------ESSLTFGDMVLKNDLS---AVRNDS 101 (644)
Q Consensus 41 ~qIfVKTlt-Gkt~~~eVd~sdTV~~VKqkIqek----eGI--P~e---------qQRLIFgGr~LeDd~t---gI~~dS 101 (644)
..|.|.... -..+++.|+.++|+..|.+.+-.+ .+. +++ ....++++..|.+... ++..+.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 456666543 356899999999999998877766 121 222 2234556677766653 688899
Q ss_pred ceeee
Q 006461 102 PLLLT 106 (644)
Q Consensus 102 tLHLv 106 (644)
++||+
T Consensus 98 ~~~L~ 102 (108)
T smart00144 98 EPHLV 102 (108)
T ss_pred CceEE
Confidence 99994
No 127
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=30.21 E-value=19 Score=37.57 Aligned_cols=42 Identities=5% Similarity=0.112 Sum_probs=34.5
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--+.++=|+++=.|||.+|||+... .++++.||-|.+|-.
T Consensus 145 s~A~~s~~gYilglgdRh~~nili~~~-------tG~v~hiDf~~~f~~ 186 (253)
T cd05163 145 QLALLSFMTYILSINNRNPDKIFISRD-------TGNVYQSDLLPSINN 186 (253)
T ss_pred HHHHHHHHHHHhcCCCCCchhEEEEcC-------CCcEEEEeeeeeecC
Confidence 455677788999999999999999873 468899999988744
No 128
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=30.12 E-value=1.7e+02 Score=24.43 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC
Q 006461 49 TGCVLG-MDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD 87 (644)
Q Consensus 49 tGkt~~-~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG 87 (644)
.|.... +.+.+..|...|+++|+++++++...-.|-|.+
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344444 799999999999999999999986777887763
No 129
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.07 E-value=1.6e+02 Score=26.97 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=34.6
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE
Q 006461 45 VQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF 85 (644)
Q Consensus 45 VKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF 85 (644)
++...|.+-.+.|+++.+-.++++++.+..+++.. ..|=|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57789999999999999999999999999999855 45533
No 130
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=29.88 E-value=2.3e+02 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=26.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 006461 50 GCVLGMDLDRSDNAHTVKRRLQLALNVP 77 (644)
Q Consensus 50 Gkt~~~eVd~sdTV~~VKqkIqekeGIP 77 (644)
|...+|.|.+++|+.+|=+.+.+++++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6678899999999999999999999997
No 131
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=29.41 E-value=2.6e+02 Score=23.54 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.2
Q ss_pred EEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCCCCC--CcEEE-EC-----CeEeccCCC
Q 006461 43 VFVQTETGC----VLGMDLDRSDNAHTVKRRLQLALNVPTD--ESSLT-FG-----DMVLKNDLS 95 (644)
Q Consensus 43 IfVKTltGk----t~~~eVd~sdTV~~VKqkIqekeGIP~e--qQRLI-Fg-----Gr~LeDd~t 95 (644)
|.|=+..+. .-+|.|.+++|+.+|=+++.+++|++.+ +-.|+ +. .+.|.++.+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 444455666 8889999999999999999999999333 33553 21 355666553
No 132
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=28.96 E-value=89 Score=28.35 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=35.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE-C---Ce-EeccCC-C----CCCCCCceee-ecc
Q 006461 51 CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF-G---DM-VLKNDL-S----AVRNDSPLLL-TRN 108 (644)
Q Consensus 51 kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF-g---Gr-~LeDd~-t----gI~~dStLHL-vRn 108 (644)
..++-.+...|||+.|+..+.+.+.| .++-||-- . +. .|.+.. | +|.+|-+|-| .||
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 37778889999999999999999999 57789832 2 22 354432 3 6777777777 654
No 133
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=27.52 E-value=1.5e+02 Score=26.52 Aligned_cols=45 Identities=4% Similarity=0.046 Sum_probs=35.1
Q ss_pred EEEe-CCCcEEEEEecC--CCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCC
Q 006461 44 FVQT-ETGCVLGMDLDR--SDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDL 94 (644)
Q Consensus 44 fVKT-ltGkt~~~eVd~--sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~ 94 (644)
.||. -.|.++.|.+.+ .-+-.+|++.|+..++++ -|.=+-|+|+.
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------~f~lKYlDde~ 49 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN------DIQIKYVDEEN 49 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------cceeEEEcCCC
Confidence 4553 378889999999 558999999999999998 45556676654
No 134
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=26.03 E-value=2.2e+02 Score=32.81 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=12.6
Q ss_pred CCCCccccCCcccccee
Q 006461 582 GHRSANEQLPACVSFVK 598 (644)
Q Consensus 582 ~~~~~~~~~~~~~~~~~ 598 (644)
..|...-.||-|+-||-
T Consensus 181 ~~Rp~tP~LPDSTDFVC 197 (458)
T PF10446_consen 181 KIRPGTPELPDSTDFVC 197 (458)
T ss_pred CCCCCCCCCCCcccccC
Confidence 33555566999999995
No 135
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.83 E-value=91 Score=23.07 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCCHHHHHHhHhh
Q 006461 406 IFLKEAAEFGLCLSEIGEMMSR 427 (644)
Q Consensus 406 ~~Lk~~a~~gLtl~eIg~~m~R 427 (644)
.|+++|...|+|..||-.++.+
T Consensus 7 ~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh
Confidence 5789999999999999887754
No 136
>PRK04171 ribosome biogenesis protein; Provisional
Probab=24.34 E-value=1.4e+02 Score=31.16 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=41.0
Q ss_pred hhhhhhhhccCCCCCCCCCccccCCCCCCceEEEEEeCCCcEEEE--EecCCCCHHHHH---HHHHHHhCCCCCCcEEE
Q 006461 11 TQMAVAVFKTPLSGEYHGNKRVEGKQPAGRRRVFVQTETGCVLGM--DLDRSDNAHTVK---RRLQLALNVPTDESSLT 84 (644)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~qIfVKTltGkt~~~--eVd~sdTV~~VK---qkIqekeGIP~eqQRLI 84 (644)
.|--.+++++|++ -.+..+|+|+|.+|+.|.| ++..-+|-..+. .|+-.+.-||++.+.|+
T Consensus 65 Hq~LL~lldSpLN-------------k~G~L~VYIhT~~~~lI~V~P~~RiPR~y~rF~gLM~qLL~k~~I~~~~~~Ll 130 (222)
T PRK04171 65 HISLLVALDSPLN-------------KEGKLRVYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKEGRVPPNGEPLL 130 (222)
T ss_pred HHHHHHHhcChhh-------------hcCCeEEEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccCCCCcchh
Confidence 3455667788776 3455899999999998877 444445555554 45556677877655554
No 137
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=24.17 E-value=26 Score=46.84 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=38.3
Q ss_pred ccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 298 SEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 298 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
..+..+.|..|+++=-|||+||||+... +++++-||=|.||=.
T Consensus 1932 ~SlA~ySvigYiLglgDRH~~NIliD~~-------sG~viHiDFg~il~~ 1974 (2105)
T COG5032 1932 RSLAVYSVIGYILGLGDRHPGNILIDRS-------SGHVIHIDFGFILFN 1974 (2105)
T ss_pred HHHHHHHHHHHHccCCCcCCceEEEEcC-------CCcEEEehHHHHHhc
Confidence 4678899999999999999999999773 679999999999876
No 138
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=24.02 E-value=2e+02 Score=25.99 Aligned_cols=60 Identities=7% Similarity=0.111 Sum_probs=45.1
Q ss_pred EEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceee
Q 006461 42 RVFVQTE-TGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLL 105 (644)
Q Consensus 42 qIfVKTl-tGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHL 105 (644)
.|.||.. .|-++.+.|.++-+-.++..+|.+++++. ..-.|-|.+- ++.+.|.++.-|.+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE---GD~iti~sq~DLd~ 62 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD---GDMITMGDQDDLDM 62 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC---CCCccccCHHHHHH
Confidence 3566655 68899999999999999999999999995 3345555554 44455777666666
No 139
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=23.95 E-value=1.4e+02 Score=32.17 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=40.1
Q ss_pred eEEEEEeCCC-cEEE-EEecCCCCHHHHHHHHHH-HhCCCCCCcEEEEC----CeEeccCCC----CCCCCCceee
Q 006461 41 RRVFVQTETG-CVLG-MDLDRSDNAHTVKRRLQL-ALNVPTDESSLTFG----DMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 41 ~qIfVKTltG-kt~~-~eVd~sdTV~~VKqkIqe-keGIP~eqQRLIFg----Gr~LeDd~t----gI~~dStLHL 105 (644)
|.|++..-++ -.++ .+...+.||.+++..|.. +..+.+-.||+.+. |+.|.|+.+ +..+++||.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 3455555444 3444 456678899999966655 46777755555443 888877764 4555545444
No 140
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=23.67 E-value=3.5e+02 Score=22.90 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCcE-EEEEecCC-CCHHHHHHHHHHHhC-CCC--CCcEEEECCeEeccCCCCCCCCCceeee
Q 006461 49 TGCV-LGMDLDRS-DNAHTVKRRLQLALN-VPT--DESSLTFGDMVLKNDLSAVRNDSPLLLT 106 (644)
Q Consensus 49 tGkt-~~~eVd~s-dTV~~VKqkIqekeG-IP~--eqQRLIFgGr~LeDd~tgI~~dStLHLv 106 (644)
.|+. ..+++... .||.+|++.|.++.. +-. ....+..+++...++ +-++++++|-++
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~-~~l~dgDevai~ 74 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDD-ALLNEGDEVAFI 74 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCC-cCcCCCCEEEEe
Confidence 4554 57788866 899999999988863 100 112455566666544 448888888775
No 141
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=23.57 E-value=1.2e+02 Score=27.23 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=43.0
Q ss_pred ceEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCC------------CCcEEEECCeEeccCCC---CCCCCC
Q 006461 40 RRRVFVQTE-TGCVLGMDLDRSDNAHTVKRRLQLA--LNVPT------------DESSLTFGDMVLKNDLS---AVRNDS 101 (644)
Q Consensus 40 ~~qIfVKTl-tGkt~~~eVd~sdTV~~VKqkIqek--eGIP~------------eqQRLIFgGr~LeDd~t---gI~~dS 101 (644)
.+.|.|... ....++|.|+.+.|+..|-.++-.+ .+..+ +.+..++|+..|.+-.. ++..+-
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 467888887 6779999999999999998877766 22211 23455556666666553 567777
Q ss_pred ceeee
Q 006461 102 PLLLT 106 (644)
Q Consensus 102 tLHLv 106 (644)
.+||+
T Consensus 96 ~~~L~ 100 (106)
T PF00794_consen 96 DPHLV 100 (106)
T ss_dssp -EEEE
T ss_pred CcEEE
Confidence 88873
No 142
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.16 E-value=29 Score=46.89 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=35.8
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.|.-=.|+=|+++=.|||+.||||... ..++|.||-|.+|--
T Consensus 2616 svA~sS~VGyILGLGDRH~qNILid~~-------taEviHIDlGiAFEQ 2657 (2806)
T KOG0892|consen 2616 SVAASSMVGYILGLGDRHGQNILIDQQ-------TAEVIHIDLGIAFEQ 2657 (2806)
T ss_pred hHHHHHHHHHHhcccchhhhheeeccc-------ccceEEEeeeeehhc
Confidence 455666888999999999999999773 579999999999965
No 143
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=20.89 E-value=2.5e+02 Score=26.07 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=41.7
Q ss_pred hHHHHHhhCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhccccCCCCCChHHHHHHHHHHHHH
Q 006461 382 DCEMLRRELPMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSREFRAGEEEPSELEVVCIEARRLVE 451 (644)
Q Consensus 382 D~~~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~~~~~~e~pS~lE~~~~~A~~~~~ 451 (644)
+.+.|+..+..|.+.+-.++.+.-. .|++..||+.+|.-.- +.+.....+|++.+.
T Consensus 112 ~~~~l~~~l~~L~~~~r~vl~l~~~-------~g~s~~eIA~~l~is~-------~tv~~~l~ra~~~Lr 167 (170)
T TIGR02952 112 ANEKLLKALKILTPKQQHVIALRFG-------QNLPIAEVARILGKTE-------GAVKILQFRAIKKLA 167 (170)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh-------cCCCHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
Confidence 3456777766777888877766444 7999999999987652 677888888887664
No 144
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=20.88 E-value=1.8e+02 Score=25.91 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=33.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC
Q 006461 51 CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG 86 (644)
Q Consensus 51 kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg 86 (644)
-|+.|.|.+.-....|..+|++++..+++.-.|-|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 577789999999999999999999999998899887
No 145
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=20.60 E-value=74 Score=33.73 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=25.4
Q ss_pred eccCChhHHHHHHHHHHHhhHHHHhhcc
Q 006461 599 LADLGEDEWTLFLEKFQELLYPAFAARK 626 (644)
Q Consensus 599 ~~~~~~~~w~~~~~~~~~~l~~~~~~~k 626 (644)
|..+++++|..||..|.++|..+|-.++
T Consensus 211 L~~L~e~~~~~FL~~Y~~~l~~aYP~~~ 238 (257)
T COG4106 211 LDRLDEEERQRFLDRYLALLAEAYPPRA 238 (257)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7889999999999999999999996664
No 146
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=20.44 E-value=1.6e+02 Score=27.39 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=29.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPT 78 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~ 78 (644)
.|+|=..+|.+-+|+|.-..|..+||.++-+|+|++.
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 3778888999999999999999999999999999985
No 147
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=20.07 E-value=5.3e+02 Score=22.04 Aligned_cols=57 Identities=7% Similarity=0.105 Sum_probs=37.1
Q ss_pred CCc-EEEEEecCCCCHHHHHHHHHHHhCC------C-----CCCcEEEECCeEeccCC-CCCCCCCceeee
Q 006461 49 TGC-VLGMDLDRSDNAHTVKRRLQLALNV------P-----TDESSLTFGDMVLKNDL-SAVRNDSPLLLT 106 (644)
Q Consensus 49 tGk-t~~~eVd~sdTV~~VKqkIqekeGI------P-----~eqQRLIFgGr~LeDd~-tgI~~dStLHLv 106 (644)
.|+ ...+++. ..||.+|.+.|.++..- . -..-.+..+|+....+. +-+++++.|.++
T Consensus 13 ~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 13 TGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred hCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEe
Confidence 454 5677886 88999999999888531 0 01234455666655443 357888888775
Done!