Query 006461
Match_columns 644
No_of_seqs 301 out of 691
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 01:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 99.7 6E-17 2.1E-21 142.2 8.5 70 37-106 18-91 (93)
2 3phx_B Ubiquitin-like protein 99.6 6.6E-16 2.2E-20 127.7 9.1 68 39-106 3-74 (79)
3 1uh6_A Ubiquitin-like 5; beta- 99.6 5.6E-16 1.9E-20 137.5 7.6 67 40-106 28-98 (100)
4 4dwf_A HLA-B-associated transc 99.6 2.1E-15 7E-20 127.8 8.8 69 38-107 3-75 (90)
5 3dbh_I NEDD8; cell cycle, acti 99.6 5.7E-15 2E-19 123.6 9.5 70 37-106 9-82 (88)
6 2kk8_A Uncharacterized protein 99.6 4.5E-15 1.5E-19 126.2 9.0 69 39-107 9-82 (84)
7 3v6c_B Ubiquitin; structural g 99.6 6.1E-15 2.1E-19 125.8 9.4 71 36-106 13-87 (91)
8 1wyw_B Ubiquitin-like protein 99.6 4.4E-15 1.5E-19 128.9 8.6 74 34-107 15-92 (97)
9 2lxa_A Ubiquitin-like protein 99.6 1.9E-15 6.6E-20 130.3 5.8 66 41-106 2-75 (87)
10 4fbj_B NEDD8; effector-HOST ta 99.6 6.7E-15 2.3E-19 125.3 9.1 66 41-106 1-70 (88)
11 4eew_A Large proline-rich prot 99.6 5.9E-15 2E-19 124.5 8.4 70 37-107 14-87 (88)
12 2faz_A Ubiquitin-like containi 99.6 6.7E-15 2.3E-19 121.1 8.5 69 39-107 1-75 (78)
13 1wgh_A Ubiquitin-like 3, HCG-1 99.6 2.5E-14 8.4E-19 129.9 12.4 80 28-107 4-97 (116)
14 2uyz_B Small ubiquitin-related 99.6 7E-15 2.4E-19 121.5 7.9 68 40-107 3-74 (79)
15 2wyq_A HHR23A, UV excision rep 99.5 1.5E-14 5.2E-19 120.6 9.2 69 39-107 4-79 (85)
16 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 3.3E-14 1.1E-18 119.2 9.8 71 37-107 4-78 (87)
17 2hj8_A Interferon-induced 17 k 99.5 1.6E-14 5.4E-19 122.8 7.9 68 40-107 4-75 (88)
18 1wy8_A NP95-like ring finger p 99.5 5.2E-14 1.8E-18 118.7 10.6 71 37-107 4-80 (89)
19 1uel_A HHR23B, UV excision rep 99.5 4.6E-14 1.6E-18 121.7 10.4 67 41-107 1-74 (95)
20 4a20_A Ubiquitin-like protein 99.5 1.6E-14 5.6E-19 127.1 7.4 71 37-107 16-94 (98)
21 1ndd_A NEDD8, protein (ubiquit 99.5 3.2E-14 1.1E-18 115.1 8.6 67 41-107 1-71 (76)
22 3m62_B UV excision repair prot 99.5 1.7E-14 5.9E-19 127.4 7.2 67 41-107 2-72 (106)
23 4hcn_B Polyubiquitin, ubiquiti 99.5 2.8E-14 9.7E-19 123.7 8.3 71 37-107 19-93 (98)
24 2dzi_A Ubiquitin-like protein 99.5 7.2E-14 2.5E-18 115.0 9.9 70 38-107 5-78 (81)
25 3n3k_B Ubiquitin; hydrolase, p 99.5 3.9E-14 1.3E-18 117.6 7.6 67 40-106 3-73 (85)
26 2kan_A Uncharacterized protein 99.5 6.9E-14 2.4E-18 121.2 9.4 70 37-107 12-86 (94)
27 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 6.8E-14 2.3E-18 119.5 9.1 67 40-106 1-71 (96)
28 2kdb_A Homocysteine-responsive 99.5 3.3E-14 1.1E-18 125.3 7.2 74 33-106 16-99 (99)
29 1sif_A Ubiquitin; hydrophobic 99.5 6.5E-14 2.2E-18 119.2 8.7 68 40-107 9-80 (88)
30 2bwf_A Ubiquitin-like protein 99.5 9E-14 3.1E-18 113.4 8.9 67 40-107 4-74 (77)
31 1ttn_A DC-UBP, dendritic cell- 99.5 6.7E-14 2.3E-18 123.3 8.6 71 37-107 20-94 (106)
32 3mtn_B UBA80, ubcep1, ubiquiti 99.5 9.5E-14 3.3E-18 115.0 8.9 68 40-107 3-74 (85)
33 3a9j_A Ubiquitin; protein comp 99.5 9.9E-14 3.4E-18 112.2 8.7 67 41-107 1-71 (76)
34 1wx8_A Riken cDNA 4931431F19; 99.5 1.6E-13 5.6E-18 117.7 10.4 70 37-107 14-87 (96)
35 2l7r_A Ubiquitin-like protein 99.5 7.3E-14 2.5E-18 120.4 8.2 73 33-107 12-88 (93)
36 3rt3_B Ubiquitin-like protein 99.5 9.9E-14 3.4E-18 128.6 9.4 70 37-106 78-151 (159)
37 2fnj_B Transcription elongatio 99.5 5.2E-14 1.8E-18 128.3 7.0 66 41-106 1-78 (118)
38 1wgd_A Homocysteine-responsive 99.5 1.2E-13 4.2E-18 118.3 8.9 70 38-107 5-84 (93)
39 1v2y_A 3300001G02RIK protein; 99.4 9.2E-14 3.1E-18 124.1 7.4 68 40-107 7-94 (105)
40 3b1l_X E3 ubiquitin-protein li 99.2 7.4E-15 2.5E-19 120.1 0.0 66 41-106 1-70 (76)
41 3l0w_B Monoubiquitinated proli 99.4 1.9E-13 6.6E-18 130.3 9.4 66 41-106 1-70 (169)
42 3vdz_A Ubiquitin-40S ribosomal 99.4 2.1E-13 7E-18 121.4 8.9 69 39-107 34-106 (111)
43 2klc_A Ubiquilin-1; ubiquitin- 99.4 4.1E-13 1.4E-17 117.6 10.3 70 37-107 22-95 (101)
44 1yqb_A Ubiquilin 3; structural 99.4 3.9E-13 1.4E-17 117.7 9.9 75 32-107 14-92 (100)
45 1se9_A Ubiquitin family; ubiqu 99.4 1.4E-13 4.7E-18 126.8 7.3 70 38-107 14-101 (126)
46 1wju_A NEDD8 ultimate buster-1 99.4 2.6E-13 8.9E-18 120.5 8.5 71 37-107 12-90 (100)
47 1yx5_B Ubiquitin; proteasome, 99.4 3.1E-13 1.1E-17 116.6 8.7 67 41-107 1-71 (98)
48 3u30_A Ubiquitin, linear DI-ub 99.4 2.7E-13 9.1E-18 127.8 9.0 70 37-106 17-90 (172)
49 4ajy_B Transcription elongatio 99.4 2.3E-13 7.9E-18 124.1 8.2 66 41-106 1-78 (118)
50 2xzm_9 RPS31E; ribosome, trans 99.4 1.3E-14 4.5E-19 141.6 0.0 65 41-106 1-65 (189)
51 4dbg_A Ranbp-type and C3HC4-ty 99.4 3.2E-13 1.1E-17 120.9 8.7 70 37-106 21-97 (105)
52 2gow_A HCG-1 protein, ubiquiti 99.4 1.8E-13 6E-18 125.6 7.1 71 37-107 14-98 (125)
53 1v5o_A 1700011N24RIK protein; 99.4 9.8E-13 3.4E-17 115.1 10.4 70 38-107 5-83 (102)
54 1wx7_A Ubiquilin 3; ubiquitin- 99.4 1.2E-12 4.1E-17 114.9 10.7 70 37-107 14-87 (106)
55 1j8c_A Ubiquitin-like protein 99.4 1.6E-12 5.4E-17 118.6 11.7 69 38-107 30-102 (125)
56 2kdi_A Ubiquitin, vacuolar pro 99.4 6.6E-13 2.2E-17 118.9 8.9 69 39-107 8-80 (114)
57 3q3f_A Ribonuclease/ubiquitin 99.4 4.8E-13 1.7E-17 130.4 8.3 67 40-106 105-175 (189)
58 3u30_A Ubiquitin, linear DI-ub 99.4 7.1E-13 2.4E-17 124.9 9.1 70 37-106 93-166 (172)
59 3m63_B Ubiquitin domain-contai 99.4 1.9E-13 6.6E-18 120.0 4.9 70 37-107 25-98 (101)
60 3rt3_B Ubiquitin-like protein 99.4 7E-13 2.4E-17 122.9 8.5 68 40-107 2-75 (159)
61 2ojr_A Ubiquitin; lanthide-bin 99.4 1.6E-12 5.5E-17 115.3 10.3 70 38-107 33-106 (111)
62 2dzm_A FAS-associated factor 1 99.4 1.3E-12 4.6E-17 115.6 9.5 67 40-107 8-80 (100)
63 1we6_A Splicing factor, putati 99.4 9.5E-13 3.3E-17 116.6 8.2 70 37-106 24-101 (111)
64 1wia_A Hypothetical ubiquitin- 99.4 1.5E-12 5E-17 111.8 8.9 67 38-107 5-76 (95)
65 3u5e_m 60S ribosomal protein L 99.4 6.4E-14 2.2E-18 127.4 0.0 66 41-106 1-70 (128)
66 1v5t_A 8430435I17RIK protein; 99.3 2.3E-12 7.7E-17 110.4 8.7 69 38-107 5-81 (90)
67 1wgg_A Ubiquitin carboxyl-term 99.3 4.2E-12 1.4E-16 110.5 10.2 68 38-107 5-77 (96)
68 1x1m_A Ubiquitin-like protein 99.3 3.4E-12 1.2E-16 112.7 9.8 70 38-107 10-98 (107)
69 3u5c_f 40S ribosomal protein S 99.3 1.7E-13 5.9E-18 129.3 0.0 66 41-106 1-70 (152)
70 3b08_A Polyubiquitin-C, ubiqui 99.3 3.8E-12 1.3E-16 115.6 8.7 67 41-107 1-71 (152)
71 3b08_A Polyubiquitin-C, ubiqui 99.3 5.9E-12 2E-16 114.4 9.6 71 37-107 73-147 (152)
72 1wxv_A BAG-family molecular ch 99.3 9.8E-12 3.4E-16 106.1 10.0 68 39-107 6-83 (92)
73 2kjr_A CG11242; UBL, ubiquitin 99.3 7.6E-12 2.6E-16 109.4 9.5 72 36-107 11-94 (95)
74 2kd0_A LRR repeats and ubiquit 99.3 6.5E-12 2.2E-16 106.7 8.8 67 41-107 12-82 (85)
75 2dzj_A Synaptic glycoprotein S 99.3 2.6E-12 8.7E-17 110.6 5.1 66 40-105 10-85 (88)
76 1v86_A DNA segment, CHR 7, way 99.3 8.7E-12 3E-16 108.1 8.3 69 37-107 14-86 (95)
77 1we7_A SF3A1 protein; structur 99.3 1.4E-11 4.9E-16 109.8 9.3 69 38-106 23-105 (115)
78 2daf_A FLJ35834 protein; hypot 99.2 3.9E-11 1.3E-15 109.4 9.9 67 41-107 16-87 (118)
79 3ai5_A Yeast enhanced green fl 99.2 3.9E-11 1.3E-15 124.8 9.4 71 37-107 230-304 (307)
80 1wf9_A NPL4 family protein; be 99.2 5.1E-11 1.7E-15 105.4 7.5 66 41-107 8-93 (107)
81 2kj6_A Tubulin folding cofacto 99.1 8.6E-11 2.9E-15 103.2 8.8 71 37-107 11-94 (97)
82 1oqy_A HHR23A, UV excision rep 99.1 4.7E-11 1.6E-15 126.8 7.6 69 39-107 6-82 (368)
83 2io1_B Small ubiquitin-related 99.1 1.4E-10 4.7E-15 101.3 8.4 71 37-107 4-78 (94)
84 4b6w_A Tubulin-specific chaper 99.1 5.5E-11 1.9E-15 102.1 4.7 62 46-107 10-82 (86)
85 1wm3_A Ubiquitin-like protein 99.0 8.8E-10 3E-14 91.1 8.8 66 41-106 2-71 (72)
86 1v6e_A Cytoskeleton-associated 99.0 5.1E-10 1.7E-14 96.7 7.4 67 41-107 8-86 (95)
87 2kzr_A Ubiquitin thioesterase 99.0 4.5E-10 1.5E-14 95.2 6.9 66 41-107 1-76 (86)
88 3a4r_A Nfatc2-interacting prot 99.0 2.3E-09 8E-14 90.3 10.7 70 37-106 4-78 (79)
89 1t0y_A Tubulin folding cofacto 99.0 9E-10 3.1E-14 99.6 7.8 70 38-107 4-85 (122)
90 2io0_B Small ubiquitin-related 99.0 1.5E-09 5.1E-14 94.3 8.6 70 38-107 3-76 (91)
91 2d07_B Ubiquitin-like protein 98.9 4.3E-09 1.5E-13 91.4 8.6 71 37-107 14-88 (93)
92 2k8h_A Small ubiquitin protein 98.9 4.6E-09 1.6E-13 94.5 8.7 71 37-107 23-97 (110)
93 3shq_A UBLCP1; phosphatase, hy 98.9 1.5E-09 5.2E-14 113.2 6.1 67 40-107 5-78 (320)
94 1wz0_A Ubiquitin-like protein 98.9 4.8E-09 1.6E-13 93.4 8.0 71 37-107 21-95 (104)
95 2eke_C Ubiquitin-like protein 98.8 9.5E-09 3.3E-13 92.0 8.1 70 37-107 28-101 (106)
96 1wjn_A Tubulin-folding protein 98.4 3.6E-07 1.2E-11 78.9 7.7 71 37-107 6-91 (97)
97 3kyd_D Small ubiquitin-related 98.4 1.2E-06 4.1E-11 79.7 9.4 73 35-107 35-111 (115)
98 3pge_A SUMO-modified prolifera 98.1 5.8E-06 2E-10 81.5 8.7 70 37-107 26-99 (200)
99 4efo_A Serine/threonine-protei 98.1 5.7E-06 1.9E-10 72.9 7.3 44 48-91 21-64 (94)
100 3tix_A Ubiquitin-like protein 98.0 1.3E-05 4.3E-10 79.0 7.5 70 37-107 54-127 (207)
101 3v7o_A Minor nucleoprotein VP3 97.6 1.1E-05 3.6E-10 80.5 0.0 70 37-107 18-91 (227)
102 3uf8_A Ubiquitin-like protein 97.5 0.00028 9.6E-09 69.3 9.3 70 37-107 18-91 (209)
103 2pjh_A Protein NPL4, nuclear p 97.3 0.00018 6.1E-09 60.9 4.3 66 40-106 4-78 (80)
104 1cja_A Protein (actin-fragmin 97.0 0.00024 8.1E-09 75.1 2.9 143 165-347 75-238 (342)
105 3ix6_A TS, tsase, thymidylate 96.7 0.00024 8.3E-09 75.5 0.0 70 37-107 18-91 (360)
106 2jxx_A Nfatc2-interacting prot 96.6 0.0092 3.2E-07 52.6 9.5 69 37-105 22-95 (97)
107 4da1_A Protein phosphatase 1K, 96.4 0.00055 1.9E-08 72.3 0.0 70 37-107 27-100 (389)
108 3akj_A CTKA; protein kinase, t 96.3 0.00065 2.2E-08 70.7 0.1 49 298-349 139-188 (325)
109 2al3_A TUG long isoform; TUG U 96.0 0.02 6.9E-07 50.1 8.1 70 38-107 7-80 (90)
110 2kc2_A Talin-1, F1; FERM, adhe 95.9 0.017 5.9E-07 53.3 7.3 38 42-79 13-50 (128)
111 2l76_A Nfatc2-interacting prot 95.2 0.083 2.9E-06 46.6 8.9 70 37-107 18-91 (95)
112 3goe_A DNA repair protein RAD6 94.3 0.22 7.4E-06 42.9 8.9 67 40-106 9-80 (82)
113 3qx1_A FAS-associated factor 1 84.1 3 0.0001 34.7 7.3 66 39-105 6-80 (84)
114 3ls8_A Phosphatidylinositol 3- 80.6 0.6 2.1E-05 52.9 2.1 41 299-347 463-503 (614)
115 3tpd_A Serine/threonine-protei 80.0 0.78 2.7E-05 49.1 2.7 46 298-347 293-339 (440)
116 1oey_A P67-PHOX, neutrophil cy 76.2 6.8 0.00023 33.7 6.9 47 39-87 4-50 (83)
117 2x6h_A GH13170P, VPS34, phosph 75.4 1.1 3.6E-05 51.6 2.1 41 299-347 537-577 (696)
118 2kvr_A Ubiquitin carboxyl-term 74.3 2.2 7.4E-05 39.2 3.5 34 52-85 57-90 (130)
119 2wxf_A Phosphatidylinositol-4, 69.7 1.6 5.4E-05 51.8 1.8 41 299-347 774-814 (940)
120 4e71_A Plexin-B2, MM1; transme 68.9 20 0.00069 32.4 8.5 44 49-92 22-77 (111)
121 2dzk_A UBX domain-containing p 68.3 44 0.0015 29.3 10.5 69 39-107 12-89 (109)
122 1e7u_A Phosphatidylinositol 3- 68.0 1.8 6E-05 51.5 1.8 41 299-347 790-830 (961)
123 1wj4_A KIAA0794 protein; UBX d 67.7 20 0.00069 32.3 8.4 69 38-107 41-118 (124)
124 2y3a_A Phosphatidylinositol-4, 67.4 2 6.9E-05 51.6 2.2 40 300-347 927-966 (1092)
125 2l32_A Small archaeal modifier 66.5 16 0.00055 30.1 6.9 61 41-107 1-61 (74)
126 3hhm_A Phosphatidylinositol-4, 61.9 2.2 7.7E-05 51.2 1.1 41 299-347 923-963 (1091)
127 2cr5_A Reproduction 8; UBX dom 55.6 34 0.0012 29.9 7.4 67 39-106 22-96 (109)
128 1wgr_A Growth factor receptor- 55.3 44 0.0015 29.5 8.0 68 40-107 9-91 (100)
129 3h6n_A Plexin-D1; structural g 55.2 42 0.0014 31.0 8.1 59 49-107 15-103 (127)
130 2r2o_A Plexin-B1; effector dom 52.8 39 0.0013 31.6 7.6 57 51-107 41-127 (138)
131 4eut_A Serine/threonine-protei 51.9 15 0.00051 37.6 5.1 42 49-90 320-361 (396)
132 4a3p_A Ubiquitin carboxyl-term 51.3 30 0.001 33.7 7.0 57 52-108 141-209 (217)
133 3jyu_A Ubiquitin carboxyl-term 49.3 29 0.001 34.1 6.6 57 52-108 153-221 (231)
134 4e74_A Plexin-A4; RBD, structu 48.7 65 0.0022 29.3 8.2 29 50-78 26-56 (117)
135 2ylm_A Ubiquitin carboxyl-term 45.2 12 0.00042 41.3 3.5 32 52-83 37-68 (530)
136 2bps_A YUKD protein; ubiquitin 43.0 47 0.0016 28.2 6.0 64 41-104 5-79 (81)
137 1ryj_A Unknown; beta/alpha pro 41.1 1.2E+02 0.0042 24.1 8.0 62 40-107 4-65 (70)
138 3rpf_C Molybdopterin convertin 40.5 66 0.0023 25.8 6.3 51 55-106 16-68 (74)
139 1s3s_G P47 protein; AAA ATPase 40.5 82 0.0028 28.3 7.6 54 40-93 52-108 (127)
140 3hug_A RNA polymerase sigma fa 39.3 33 0.0011 28.2 4.5 57 382-452 27-83 (92)
141 1vjk_A Molybdopterin convertin 36.9 1.4E+02 0.0047 25.2 8.1 36 39-74 8-50 (98)
142 3ivf_A Talin-1; FERM domain, c 35.3 74 0.0025 32.8 7.3 65 42-107 5-83 (371)
143 3qij_A Protein 4.1; cytoskelet 35.3 45 0.0015 33.6 5.5 40 39-78 16-55 (296)
144 1b0n_B Protein (SINI protein); 31.9 34 0.0012 27.4 3.2 24 406-429 17-40 (57)
145 1ef1_A Moesin; membrane, FERM 31.9 55 0.0019 32.4 5.5 37 41-78 2-38 (294)
146 1h4r_A Merlin; FERM, neurofibr 31.2 60 0.002 32.6 5.7 39 39-78 21-59 (314)
147 1q1o_A Cell division control p 30.8 65 0.0022 28.5 5.1 51 37-87 2-64 (98)
148 3kuz_A Plexin-C1; structural g 30.5 96 0.0033 28.6 6.3 29 51-79 39-71 (126)
149 2kmc_A Fermitin family homolog 30.1 1.3E+02 0.0044 26.9 6.8 71 37-107 16-98 (102)
150 1vd2_A Protein kinase C, IOTA 28.9 2.2E+02 0.0074 24.5 7.9 46 43-88 7-54 (89)
151 3c57_A Two component transcrip 28.2 75 0.0026 26.5 4.9 70 355-451 2-71 (95)
152 2kmm_A Guanosine-3',5'-BIS(dip 27.7 90 0.0031 24.3 5.1 62 41-107 1-62 (73)
153 4gmv_A RAS-associated and plec 26.5 1.8E+02 0.0063 29.7 8.3 53 43-95 34-93 (281)
154 3po0_A Small archaeal modifier 25.7 2.3E+02 0.0078 23.1 7.4 57 49-106 15-83 (89)
155 3ivf_A Talin-1; FERM domain, c 25.7 81 0.0028 32.5 5.6 39 40-78 85-123 (371)
156 3qa8_A MGC80376 protein; kinas 23.6 44 0.0015 38.1 3.4 47 47-93 318-365 (676)
157 2o8x_A Probable RNA polymerase 23.3 1.8E+02 0.0062 21.8 6.0 57 382-452 5-61 (70)
158 1f0z_A THis protein; ubiquitin 21.6 1.8E+02 0.0062 22.6 5.7 54 48-107 5-61 (66)
159 2kgl_A Mesoderm development ca 21.2 1.1E+02 0.0036 30.3 5.0 28 592-619 75-103 (195)
160 1tyg_B YJBS; alpha beta barrel 21.1 1.6E+02 0.0054 25.1 5.6 62 37-107 17-82 (87)
161 3tca_A Amyloid beta A4 precurs 20.9 2E+02 0.0068 27.8 7.1 44 42-85 36-79 (291)
162 3hk0_A Growth factor receptor- 20.4 1.8E+02 0.006 29.3 6.7 55 41-95 9-70 (256)
163 1npb_A Fosfomycin-resistance p 20.2 63 0.0021 27.4 3.0 41 155-195 82-122 (141)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.68 E-value=6e-17 Score=142.17 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=65.6
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
.+.-|+|||||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|++++||||.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999986 99999999994
No 2
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=127.66 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
..|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 459999999999999999999999999999999999999999999999999999875 99999999995
No 3
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=5.6e-16 Score=137.53 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=64.8
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
-|+|||||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|++++||||+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 39999999999999999999999999999999999999999999999999999986 99999999996
No 4
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.60 E-value=2.1e-15 Score=127.78 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=65.2
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+..|+|+||+.+|+++.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +| ++++|||+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEe
Confidence 4579999999999999999999999999999999999999999999999999999875 89 899999964
No 5
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.57 E-value=5.7e-15 Score=123.64 Aligned_cols=70 Identities=20% Similarity=0.370 Sum_probs=66.3
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
....|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 45579999999999999999999999999999999999999999999999999999875 99999999995
No 6
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=4.5e-15 Score=126.21 Aligned_cols=69 Identities=20% Similarity=0.418 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeE-eccCCC----CCCCCCceeeec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMV-LKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~-LeDd~t----gI~~dStLHLvR 107 (644)
.-|+|||||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++ |+|+.+ +|+++++|||+.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEE
Confidence 359999999999999999999999999999999999999999999999999 999886 999999999963
No 7
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.57 E-value=6.1e-15 Score=125.75 Aligned_cols=71 Identities=28% Similarity=0.499 Sum_probs=67.4
Q ss_pred CCCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 36 QPAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 36 ~~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
++...|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEE
Confidence 366789999999999999999999999999999999999999999999999999999875 99999999995
No 8
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.57 E-value=4.4e-15 Score=128.90 Aligned_cols=74 Identities=8% Similarity=0.157 Sum_probs=67.2
Q ss_pred CCCCCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 34 GKQPAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 34 ~~~~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+.++..|+|+|||.+|+++.|+|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 15 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 15 DKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp ----CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 33467789999999999999999999999999999999999999999999999999999986 999999999964
No 9
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.9e-15 Score=130.31 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=62.4
Q ss_pred eEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCcEEEECCeEeccCCC----CC-CCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLD--RSDNAHTVKRRL-QLALNVPTDESSLTFGDMVLKNDLS----AV-RNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd--~sdTV~~VKqkI-qekeGIP~eqQRLIFgGr~LeDd~t----gI-~~dStLHLv 106 (644)
|+|||||++|++++++|+ +++||..||++| ++++|||+++|||||+|++|+|+.+ +| +++++|||+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEE
Confidence 899999999999999876 999999999999 9999999999999999999999985 89 799999994
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.56 E-value=6.7e-15 Score=125.34 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=63.7
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 99999999995
No 11
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.56 E-value=5.9e-15 Score=124.47 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+ +| ++++|||+.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 44569999999999999999999999999999999999999999999999999999875 89 899999963
No 12
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=6.7e-15 Score=121.11 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=64.2
Q ss_pred CceEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 39 GRRRVFVQTETGCVL-GMD-LDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~-~~e-Vd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.|+|+|||.+|+++ .++ |++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 469999999999996 999 999999999999999999999999999999999998875 899999999963
No 13
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=2.5e-14 Score=129.85 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=70.7
Q ss_pred CCccccCCCCCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCcEEEECCeEeccCCC----
Q 006461 28 GNKRVEGKQPAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQL------ALNV--PTDESSLTFGDMVLKNDLS---- 95 (644)
Q Consensus 28 ~~~~~~~~~~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqe------keGI--P~eqQRLIFgGr~LeDd~t---- 95 (644)
+...|.+..+.+.|+|+|||++|++++|+|++++||..||++|++ ++|+ |+++|||||.|++|+|+.+
T Consensus 4 ~~~~~~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y 83 (116)
T 1wgh_A 4 GSSGMSSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 83 (116)
T ss_dssp CCCCCCCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTT
T ss_pred ccccccCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHc
Confidence 456677777889999999999999999999999999999999999 7786 6999999999999999975
Q ss_pred CCCCC--Cceeeec
Q 006461 96 AVRND--SPLLLTR 107 (644)
Q Consensus 96 gI~~d--StLHLvR 107 (644)
+|..+ +|||||.
T Consensus 84 ~I~~~~~~tlhLvl 97 (116)
T 1wgh_A 84 KLPFGKTTVMHLVA 97 (116)
T ss_dssp TCCSSCEEEEEEEE
T ss_pred CCCCCCceEEEEEc
Confidence 77544 7899964
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.55 E-value=7e-15 Score=121.50 Aligned_cols=68 Identities=7% Similarity=0.152 Sum_probs=65.2
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+|||.+|+++.++|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999999986 999999999963
No 15
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.54 E-value=1.5e-14 Score=120.57 Aligned_cols=69 Identities=9% Similarity=0.233 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLA---LNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqek---eGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.|+|+||+.+|+++.++|++++||.+||++|+++ .|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 56999999999999999999999999999999998 8999999999999999999875 999999999964
No 16
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=3.3e-14 Score=119.21 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=66.8
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+...|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999875 999999999954
No 17
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=122.82 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=65.0
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~ 75 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999999999875 899999999964
No 18
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=5.2e-14 Score=118.68 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCceEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETG-CVLGM-DLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltG-kt~~~-eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+..|+|+||+.+| +++.+ +|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|.++++|||+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 80 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLV 80 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 34569999999999 79999 5999999999999999999999999999999999999875 999999999953
No 19
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=4.6e-14 Score=121.75 Aligned_cols=67 Identities=13% Similarity=0.296 Sum_probs=63.7
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLA---LNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqek---eGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+|||.+|+++.++|++++||.+||++|+++ +|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 799999999999999999999999999999999 8999999999999999999875 999999999953
No 20
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.51 E-value=1.6e-14 Score=127.13 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCCceEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCcEEEECCeEeccCCC----CC-CCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGM--DLDRSDNAHTVKRRL-QLALNVPTDESSLTFGDMVLKNDLS----AV-RNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~--eVd~sdTV~~VKqkI-qekeGIP~eqQRLIFgGr~LeDd~t----gI-~~dStLHLvR 107 (644)
....|+|+|||++|+++++ +|++++||.+||++| +++.|+|+++|||+|+|++|+|+.+ +| +++++|||+-
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 4567999999999998777 556999999999999 8889999999999999999999875 89 9999999963
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.51 E-value=3.2e-14 Score=115.06 Aligned_cols=67 Identities=19% Similarity=0.340 Sum_probs=63.9
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998875 899999999953
No 22
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.7e-14 Score=127.36 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=63.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+|||.+|+++.|+|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999874 999999999964
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.8e-14 Score=123.69 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=65.1
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
....|+|+||+.+|+++.|+|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 34469999999999999999999999999999999999999999999999999999875 999999999953
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-14 Score=115.02 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=65.7
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+..|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999999999998875 999999999953
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=3.9e-14 Score=117.61 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=63.9
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEE
Confidence 58999999999999999999999999999999999999999999999999999875 89999999995
No 26
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=6.9e-14 Score=121.19 Aligned_cols=70 Identities=16% Similarity=0.326 Sum_probs=65.3
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccC-CC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKND-LS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd-~t----gI~~dStLHLvR 107 (644)
....|+|+||+.+| ++.++|++++||.+||++|++++|||+++|||+|+|++|+|+ .+ +|+++++|||+.
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 45569999999988 999999999999999999999999999999999999999998 65 999999999964
No 27
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.49 E-value=6.8e-14 Score=119.53 Aligned_cols=67 Identities=27% Similarity=0.468 Sum_probs=63.9
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
.|+|+||+.+|+++.|+|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999999999999999999999875 89999999995
No 28
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=125.29 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=61.7
Q ss_pred cCCCCCCceEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-hCCCC-CCcEEEECCeEeccCCC------CCCCCCc
Q 006461 33 EGKQPAGRRRVFVQTETGC--VLGMDLDRSDNAHTVKRRLQLA-LNVPT-DESSLTFGDMVLKNDLS------AVRNDSP 102 (644)
Q Consensus 33 ~~~~~sd~~qIfVKTltGk--t~~~eVd~sdTV~~VKqkIqek-eGIP~-eqQRLIFgGr~LeDd~t------gI~~dSt 102 (644)
.+......|+|+|||.+|+ +++|+|++++||..||++|+++ +|+|+ ++|||||+|++|+|+.+ +|++++|
T Consensus 16 ~~~~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~t 95 (99)
T 2kdb_A 16 NLYFQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHM 95 (99)
T ss_dssp -------CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEE
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCE
Confidence 3333556799999999999 7899999999999999999997 67765 99999999999999873 7999999
Q ss_pred eeee
Q 006461 103 LLLT 106 (644)
Q Consensus 103 LHLv 106 (644)
||||
T Consensus 96 ihLv 99 (99)
T 2kdb_A 96 VHLV 99 (99)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9996
No 29
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=6.5e-14 Score=119.23 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=64.3
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 68999999999999999999999999999999999999999999999999998875 899999999964
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.48 E-value=9e-14 Score=113.42 Aligned_cols=67 Identities=12% Similarity=0.278 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+||+ +|+++.++|++++||.+||++|++..|+|+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 38999999 99999999999999999999999999999999999999999999875 899999999975
No 31
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=6.7e-14 Score=123.29 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=66.4
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+...|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999874 999999999964
No 32
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=9.5e-14 Score=115.04 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=64.8
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999875 899999999953
No 33
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.47 E-value=9.9e-14 Score=112.21 Aligned_cols=67 Identities=27% Similarity=0.459 Sum_probs=63.8
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|.|+.+ +|.++++|||+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998875 899999999953
No 34
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=1.6e-13 Score=117.74 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+...|+|+||+. |+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 556799999998 9999999999999999999999999999999999999999999886 999999999964
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.47 E-value=7.3e-14 Score=120.37 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=62.3
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 33 EGKQPAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 33 ~~~~~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+.+...|+|+||+ |+++.++|++++||.+||++|+++.|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 12 ~~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 12 SGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp --------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEEC
T ss_pred cCCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 344466779999999 9999999999999999999999999999999999999999999885 999999999953
No 36
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.47 E-value=9.9e-14 Score=128.60 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=66.8
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
..+.|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 78 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 78 SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999875 99999999995
No 37
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.46 E-value=5.2e-14 Score=128.33 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=60.8
Q ss_pred eEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCC-------CCCceeee
Q 006461 41 RRVFVQTETGC-VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVR-------NDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGk-t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~-------~dStLHLv 106 (644)
|+|||++..|+ ++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ ||+ ++|||||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 57777777787 59999999999999999999999999999999999999999986 899 79999995
No 38
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.2e-13 Score=118.26 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=64.1
Q ss_pred CCceEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCcEEEECCeEeccCCC------CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGC--VLGMDLDRSDNAHTVKRRLQLAL--NVPTDESSLTFGDMVLKNDLS------AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGk--t~~~eVd~sdTV~~VKqkIqeke--GIP~eqQRLIFgGr~LeDd~t------gI~~dStLHLvR 107 (644)
...|+|+||+.+|+ ++.++|++++||.+||++|++++ |+|+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 34699999999999 78888889999999999999998 999999999999999999874 789999999964
No 39
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=9.2e-14 Score=124.12 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=62.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCcEEEECCeEeccC-CC----CCCC
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPT---------------DESSLTFGDMVLKND-LS----AVRN 99 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~---------------eqQRLIFgGr~LeDd-~t----gI~~ 99 (644)
.|+|+|||++|+++.|+|++++||.+||++|++++|+|+ ++|+|||+|++|.|| .+ +|++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 499999999999999999999999999999999999987 467999999999754 54 9999
Q ss_pred CCceeeec
Q 006461 100 DSPLLLTR 107 (644)
Q Consensus 100 dStLHLvR 107 (644)
+++||||+
T Consensus 87 g~~l~lv~ 94 (105)
T 1v2y_A 87 RDEVSFIK 94 (105)
T ss_dssp SEEEEEEE
T ss_pred CCEEEEEe
Confidence 99999975
No 40
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.17 E-value=7.4e-15 Score=120.07 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=63.4
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|+||+.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 7999999999999999999999999999999999999999999999999998874 89999999995
No 41
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.44 E-value=1.9e-13 Score=130.32 Aligned_cols=66 Identities=27% Similarity=0.485 Sum_probs=63.9
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 99999999995
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.44 E-value=2.1e-13 Score=121.39 Aligned_cols=69 Identities=26% Similarity=0.424 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
..|+|+||+.+|+++.|+|++++||.+||++|+++.|||+++|||+|+|+.|.|+.+ +|+++++|||+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999999999875 999999999953
No 43
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-13 Score=117.61 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=65.3
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
....|+|+||+. |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~ 95 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVI 95 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEE
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 567899999998 9999999999999999999999999999999999999999998875 899999999964
No 44
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=3.9e-13 Score=117.66 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=68.4
Q ss_pred ccCCCCCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 32 VEGKQPAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 32 ~~~~~~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
..++..+..|+|+||+.+|+ +.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 14 ~~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 92 (100)
T 1yqb_A 14 LVPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 92 (100)
T ss_dssp TCCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEE
T ss_pred CCCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 34555777899999999996 7999999999999999999999999999999999999999875 999999999964
No 45
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.43 E-value=1.4e-13 Score=126.81 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=63.8
Q ss_pred CCceEEEEEeCCCcEE-EEEecCCCCHHHHHHHH-----HHHhCCCC--CCcEEEECCeEeccCCC----CCCCC-----
Q 006461 38 AGRRRVFVQTETGCVL-GMDLDRSDNAHTVKRRL-----QLALNVPT--DESSLTFGDMVLKNDLS----AVRND----- 100 (644)
Q Consensus 38 sd~~qIfVKTltGkt~-~~eVd~sdTV~~VKqkI-----qekeGIP~--eqQRLIFgGr~LeDd~t----gI~~d----- 100 (644)
.+.|+|+|||++|+++ .++|++++||..||++| ++++|||+ ++|||||+|++|+|+.+ +|+++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 3789999999999999 69999999999999999 66789997 89999999999999985 89988
Q ss_pred -Cceeeec
Q 006461 101 -SPLLLTR 107 (644)
Q Consensus 101 -StLHLvR 107 (644)
+|+|||-
T Consensus 94 v~tmhlVl 101 (126)
T 1se9_A 94 VTTMHVII 101 (126)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEEe
Confidence 7899963
No 46
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=2.6e-13 Score=120.46 Aligned_cols=71 Identities=6% Similarity=0.054 Sum_probs=65.2
Q ss_pred CCCceEEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTET----GCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTlt----Gkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
..+.-.|.|++.+ |+++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ +|+++++||+++
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 4445568888888 8899999999999999999999999999999999999999999986 999999998876
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.42 E-value=3.1e-13 Score=116.63 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=63.9
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 71 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998875 899999999953
No 48
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=127.82 Aligned_cols=70 Identities=26% Similarity=0.455 Sum_probs=65.4
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
+...|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~ 90 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 90 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeee
Confidence 45569999999999999999999999999999999999999999999999999999875 99999999995
No 49
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.42 E-value=2.3e-13 Score=124.09 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=61.8
Q ss_pred eEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCC-------CCceeee
Q 006461 41 RRVFVQTETGC-VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRN-------DSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGk-t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~-------dStLHLv 106 (644)
|.|||+.-.++ ++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ ||++ ++||||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 56888888888 88999999999999999999999999999999999999999985 8999 9999995
No 50
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.42 E-value=1.3e-14 Score=141.60 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHLv 106 (644)
|+|||||++|++++|+|++++||.+||++|++.+|||+++|||||+|++|+|+.+ +.++|||||+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~T-Ls~~STLhLv 65 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTEL-VTDDVTYYLS 65 (189)
T ss_dssp ------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCc-ccCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999887 5699999995
No 51
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.42 E-value=3.2e-13 Score=120.89 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=64.2
Q ss_pred CCCceEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CC-CCCCceeee
Q 006461 37 PAGRRRVFVQTETG--CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AV-RNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltG--kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI-~~dStLHLv 106 (644)
..=.|+|+|++..+ .+++++|++++||..||++|++++|||+++|||+|+|+.|+|+.+ || ++|++|||+
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 34468999999985 799999999999999999999999999999999999999998875 99 699999995
No 52
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=125.64 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=63.7
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCcEEEECCeEeccCCC----CCCCCC--c
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQL------ALNVP--TDESSLTFGDMVLKNDLS----AVRNDS--P 102 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqe------keGIP--~eqQRLIFgGr~LeDd~t----gI~~dS--t 102 (644)
+.+.|+|+|||++|++++++|++++||.+||++|++ ++||| +++|||||+|++|+|+.+ +|+.++ |
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 445699999999999999999999999999999999 88995 899999999999999985 888655 8
Q ss_pred eeeec
Q 006461 103 LLLTR 107 (644)
Q Consensus 103 LHLvR 107 (644)
||||.
T Consensus 94 lhlv~ 98 (125)
T 2gow_A 94 MHLVA 98 (125)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99953
No 53
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=9.8e-13 Score=115.08 Aligned_cols=70 Identities=13% Similarity=0.258 Sum_probs=64.0
Q ss_pred CCceEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccC-CC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETG----CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKND-LS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltG----kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd-~t----gI~~dStLHLvR 107 (644)
+..|+|+||+.+| +++.++|++++||.+||++|++++|||+++|||+|+|++|+|+ .+ +|+++++|||+.
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 3459999999865 7999999999999999999999999999999999999999887 44 899999999964
No 54
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.2e-12 Score=114.94 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+..|+|+||+.+|+ +.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEE
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 345699999999996 7999999999999999999999999999999999999999875 999999999964
No 55
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.6e-12 Score=118.56 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
...|+|+||+. |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45799999999 9999999999999999999999999999999999999999998875 899999999964
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=6.6e-13 Score=118.93 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=65.0
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+..+|+||+++|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 80 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVL 80 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999999998875 899999999953
No 57
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.39 E-value=4.8e-13 Score=130.44 Aligned_cols=67 Identities=27% Similarity=0.471 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
.|+|+|||++|+++.|+|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|++++||||+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEEC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 38999999999999999999999999999999999999999999999999999875 99999999995
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.38 E-value=7.1e-13 Score=124.91 Aligned_cols=70 Identities=27% Similarity=0.465 Sum_probs=66.6
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
..+.|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|++++||||+
T Consensus 93 ~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999875 99999999995
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.9e-13 Score=119.97 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=63.3
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+..++|+||+ +|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECC
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 55668899999 99999999999999999999999999999999999999999999874 999999999985
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.38 E-value=7e-13 Score=122.86 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEE-E-CCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLT-F-GDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLI-F-gGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+ | +|++|+|+.+ +|+++++|||+.
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence 389999999999999999999999999999999999999999999 9 7999999875 999999999964
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=115.33 Aligned_cols=70 Identities=26% Similarity=0.413 Sum_probs=65.7
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
...|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3469999999999999999999999999999999999999999999999999998874 899999999953
No 62
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=115.56 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=62.4
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE--CCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF--GDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF--gGr~LeDd~t----gI~~dStLHLvR 107 (644)
.|++|+++.+|+++.|+|++++||+.||++|++++|||+++|+|+| +|+ |+|+.+ +|+++++||||-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEe
Confidence 5899999999999999999999999999999999999999999997 666 988875 899999999975
No 63
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.37 E-value=9.5e-13 Score=116.64 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=65.5
Q ss_pred CCCceEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTE---TGCVLGMDLDR-SDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTl---tGkt~~~eVd~-sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
..+.|+|+||+. +|+++.++|++ ++||.+||++|++.+|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 345699999999 89999999998 999999999999999999999999999999999875 89999999995
No 64
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.5e-12 Score=111.80 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=62.0
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccC-CC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKND-LS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd-~t----gI~~dStLHLvR 107 (644)
...|+|+||+.+|+++.++|++++||.+||++|++++ +++|||+|+|++|+|+ .+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHR 76 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEE
Confidence 3469999999999999999999999999999999998 6999999999999998 64 899999999965
No 65
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.36 E-value=6.4e-14 Score=127.39 Aligned_cols=66 Identities=27% Similarity=0.485 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|+|||.+|+++.++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+ +|+++++|||+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999875 99999999995
No 66
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.34 E-value=2.3e-12 Score=110.43 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=64.6
Q ss_pred CCceEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCcEEE---ECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGM-DLDRSDNAHTVKRRLQLALNVPTDESSLT---FGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~-eVd~sdTV~~VKqkIqekeGIP~eqQRLI---FgGr~LeDd~t----gI~~dStLHLvR 107 (644)
...|+|+||+ .|+++.+ +|++++||.+||++|++++|||+++|||+ |+|++|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 3468999997 8999999 99999999999999999999999999999 99999998875 899999999985
No 67
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=4.2e-12 Score=110.50 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=63.2
Q ss_pred CCceEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVL-GMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~-~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
...|+|+||+ .|+++ .++|++++||.+||++|++++|||+++|||+|.|++|+|+ + +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 3469999996 79999 6999999999999999999999999999999999999987 5 899999999975
No 68
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=3.4e-12 Score=112.69 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCceEEEEEeCCC---cEEEEE--------ecCC-CCHHHHHHHHHHHh--CCCCCC-cEEEECCeEeccCCC----CCC
Q 006461 38 AGRRRVFVQTETG---CVLGMD--------LDRS-DNAHTVKRRLQLAL--NVPTDE-SSLTFGDMVLKNDLS----AVR 98 (644)
Q Consensus 38 sd~~qIfVKTltG---kt~~~e--------Vd~s-dTV~~VKqkIqeke--GIP~eq-QRLIFgGr~LeDd~t----gI~ 98 (644)
...|+|+||+.+| +++.|+ |+++ +||.+||++|++++ |+|+++ |||+|+|+.|+|+.+ +|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 3468999999999 899999 5555 99999999999999 999999 999999999999875 999
Q ss_pred CCCceeeec
Q 006461 99 NDSPLLLTR 107 (644)
Q Consensus 99 ~dStLHLvR 107 (644)
++++|||+.
T Consensus 90 ~g~~i~lv~ 98 (107)
T 1x1m_A 90 PGSTVHVLR 98 (107)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999975
No 69
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.31 E-value=1.7e-13 Score=129.29 Aligned_cols=66 Identities=27% Similarity=0.485 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
|+|+||+++|+++.|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+ +|+++++|||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 89999999994
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.31 E-value=3.8e-12 Score=115.58 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=64.1
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|+|+|||.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 71 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEe
Confidence 7999999999999999999999999999999999999999999999999998875 999999999964
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.30 E-value=5.9e-12 Score=114.37 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=66.6
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
..+.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 73 ~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 73 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred cccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 45569999999999999999999999999999999999999999999999999998875 899999999964
No 72
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=9.8e-12 Score=106.07 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCC-C----CCCCCCceeeec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRS-----DNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDL-S----AVRNDSPLLLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~s-----dTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~-t----gI~~dStLHLvR 107 (644)
..|+|+||+ .|+++.++|+++ .||.+||++|+++.|||+++|||+|+|+.|.|+. + +|+++++|||+.
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 459999999 699999999995 9999999999999999999999999999999843 3 899999999975
No 73
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.29 E-value=7.6e-12 Score=109.38 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=64.3
Q ss_pred CCCCceEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--Ce---Ee-ccCCC----CCCCCCce
Q 006461 36 QPAGRRRVFVQTETGC--VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DM---VL-KNDLS----AVRNDSPL 103 (644)
Q Consensus 36 ~~sd~~qIfVKTltGk--t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr---~L-eDd~t----gI~~dStL 103 (644)
++.+.+.|+|++..+. +++++|++++||.+||++|+.++|||+++|||+|. |+ +| +|+.+ +|+++++|
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 4788899999998775 89999999999999999999999999999999997 45 55 77765 99999999
Q ss_pred eeec
Q 006461 104 LLTR 107 (644)
Q Consensus 104 HLvR 107 (644)
||+.
T Consensus 91 hlvD 94 (95)
T 2kjr_A 91 HVVD 94 (95)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 74
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=6.5e-12 Score=106.67 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=62.8
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
-.++|++.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 12 ~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 12 TIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred cEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 4678899999999999999999999999999999999999999999999998874 899999999975
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=110.61 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=60.5
Q ss_pred ceEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCcEEEEC--CeEeccCCC----CCCCCCceee
Q 006461 40 RRRVFVQTETGCVL--GM-DLDRSDNAHTVKRRLQLA-LNVPTDESSLTFG--DMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 40 ~~qIfVKTltGkt~--~~-eVd~sdTV~~VKqkIqek-eGIP~eqQRLIFg--Gr~LeDd~t----gI~~dStLHL 105 (644)
.|+|+|||.+|+++ .+ +|++++||.+||++|+++ .|||+++|||+|. |++|+|+.+ +|+++++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 49999999999886 58 999999999999999995 8999999999987 999998875 8999999987
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.27 E-value=8.7e-12 Score=108.08 Aligned_cols=69 Identities=6% Similarity=0.131 Sum_probs=63.3
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.+.|+|+||. .|+++.++|++++||.+||++|+++.|||+++|||+|.|++|+| .+ +|+++++|||+.
T Consensus 14 ~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp CCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECC
T ss_pred CCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEe
Confidence 56779999995 79999999999999999999999999999999999999999944 44 899999999985
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.26 E-value=1.4e-11 Score=109.84 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=64.1
Q ss_pred CCceEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCce
Q 006461 38 AGRRRVFVQTE----------TGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPL 103 (644)
Q Consensus 38 sd~~qIfVKTl----------tGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStL 103 (644)
.+.++|.|++. +|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35689999985 58999999999999999999999999999999999999999999875 99999999
Q ss_pred eee
Q 006461 104 LLT 106 (644)
Q Consensus 104 HLv 106 (644)
||+
T Consensus 103 ~lv 105 (115)
T 1we7_A 103 HLA 105 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 995
No 78
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.9e-11 Score=109.41 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=62.9
Q ss_pred eEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQ-TETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVK-TltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.|.|| +..|.++++.++++.||.+||++|++++++|+++|||||+|+.|+|+.+ ||+++.||||+.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 667777 6678899999999999999999999999999999999999999999987 999999999986
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.18 E-value=3.9e-11 Score=124.78 Aligned_cols=71 Identities=27% Similarity=0.456 Sum_probs=66.8
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
....|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999998875 899999999964
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.15 E-value=5.1e-11 Score=105.43 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=60.2
Q ss_pred eEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCcEEEECCe-----------E----eccCCC----CCCCC
Q 006461 41 RRVFVQTETGCVLGMDLD-RSDNAHTVKRRLQLALNVPTDESSLTFGDM-----------V----LKNDLS----AVRND 100 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd-~sdTV~~VKqkIqekeGIP~eqQRLIFgGr-----------~----LeDd~t----gI~~d 100 (644)
|+|+|||.+|+. .|+|+ +++||.+||++|++++|||+++|+|+|.++ + ++|+.+ +|+++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 899999999977 79999 999999999999999999999999999988 4 466664 99999
Q ss_pred Cceeeec
Q 006461 101 SPLLLTR 107 (644)
Q Consensus 101 StLHLvR 107 (644)
++|||+.
T Consensus 87 ~~L~l~~ 93 (107)
T 1wf9_A 87 SMVYLAY 93 (107)
T ss_dssp CEEECCC
T ss_pred CEEEEEe
Confidence 9999975
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.15 E-value=8.6e-11 Score=103.25 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=61.9
Q ss_pred CCCceEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC---eE---e-ccCCC----CCCCCCce
Q 006461 37 PAGRRRVFVQTETG--CVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD---MV---L-KNDLS----AVRNDSPL 103 (644)
Q Consensus 37 ~sd~~qIfVKTltG--kt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG---r~---L-eDd~t----gI~~dStL 103 (644)
.++-+.|+|++.+. +.+.++|++++||.+||++|+.++|||+++|||+|.| +. | +|+.+ +|+++++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45668899998666 4899999999999999999999999999999999988 33 4 77775 99999999
Q ss_pred eeec
Q 006461 104 LLTR 107 (644)
Q Consensus 104 HLvR 107 (644)
||+.
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 82
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.13 E-value=4.7e-11 Score=126.78 Aligned_cols=69 Identities=9% Similarity=0.265 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCcEEEECCeEeccCCC----CCCCCCce-eeec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQL---ALNVPTDESSLTFGDMVLKNDLS----AVRNDSPL-LLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqe---keGIP~eqQRLIFgGr~LeDd~t----gI~~dStL-HLvR 107 (644)
..|+|+|||.+|+++.|+|++++||.+||++|++ ++|||+++|||||+|+.|+|+.+ +|+++++| ||+.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 3589999999999999999999999999999999 67899999999999999999874 89999999 7754
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.11 E-value=1.4e-10 Score=101.26 Aligned_cols=71 Identities=7% Similarity=0.138 Sum_probs=65.9
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+..|+|+||+.+|+++.|.|.+++++..||+.++++.|||+++|||+|+|++|.++.| +++++++||++.
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999999999999886 999999999964
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.09 E-value=5.5e-11 Score=102.09 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=56.0
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE-------CCeEeccCCC----CCCCCCceeeec
Q 006461 46 QTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF-------GDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 46 KTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF-------gGr~LeDd~t----gI~~dStLHLvR 107 (644)
....++.+.+.+++++||.+||++|+.++|||+++|||+| .|++|+|+.+ +|++|++||||-
T Consensus 10 s~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 10 SASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp TTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred cCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 3456778899999999999999999999999999999997 4788999986 999999999974
No 85
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.02 E-value=8.8e-10 Score=91.06 Aligned_cols=66 Identities=8% Similarity=0.151 Sum_probs=63.4
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
++|+||+.+|+++.|.|.+++++..|++.++++.|+++.+|||+|+|++|.++.| +++++++||++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999886 89999999985
No 86
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=5.1e-10 Score=96.68 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=58.4
Q ss_pred eEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC---eE---e-ccCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGC-VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD---MV---L-KNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGk-t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG---r~---L-eDd~t----gI~~dStLHLvR 107 (644)
+.|+|++.... .+.++|++++||.+||++|+.++|||+++|||+|.| +. | +|+.+ +|+++++|||+.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 77899986553 789999999999999999999999999999999986 43 4 67764 899999999985
No 87
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.01 E-value=4.5e-10 Score=95.21 Aligned_cols=66 Identities=14% Similarity=0.307 Sum_probs=58.5
Q ss_pred eEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEec---cCCC----CCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMD-LDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLK---NDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~e-Vd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~Le---Dd~t----gI~~dStLHLvR 107 (644)
|+|+||+.+|+.+ ++ |++++||.+||++|+++.|||+++|+|+|+ +++|. ++.+ ||.++++|||..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 7899999999765 77 999999999999999999999999999998 48874 3443 899999999975
No 88
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.99 E-value=2.3e-09 Score=90.33 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCceEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 37 PAGRRRVFVQTETGC-VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 37 ~sd~~qIfVKTltGk-t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
.+..++|+||+.+|+ ++.|.|.+++++..|+..++++.|+++++|||+|+|++|.++.| +++++++||+.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 456799999999997 99999999999999999999999999999999999999999887 99999999974
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.97 E-value=9e-10 Score=99.64 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCceEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC---e---Ee-ccCCC----CCCCCCceee
Q 006461 38 AGRRRVFVQTETGC-VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD---M---VL-KNDLS----AVRNDSPLLL 105 (644)
Q Consensus 38 sd~~qIfVKTltGk-t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG---r---~L-eDd~t----gI~~dStLHL 105 (644)
++.+.|+|++..+. .+.++|++++||.+||++|+.++|||+++|||+|.| + +| +|+.+ +|+++++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 44688999986553 789999999999999999999999999999999977 4 34 66664 9999999999
Q ss_pred ec
Q 006461 106 TR 107 (644)
Q Consensus 106 vR 107 (644)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=1.5e-09 Score=94.34 Aligned_cols=70 Identities=7% Similarity=0.151 Sum_probs=65.7
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+..++|+||+.+|+++.|.|.+++++..|+..++++.|+++.++||+|+|++|.++.| +++++++||++.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 3468999999999999999999999999999999999999999999999999998886 899999999975
No 91
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.88 E-value=4.3e-09 Score=91.41 Aligned_cols=71 Identities=7% Similarity=0.145 Sum_probs=66.4
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+..++|+||+.+|+.+.|.|.+++++..|+..++++.|++++++||+|+|++|.++.| +++++++||++.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999998886 899999999964
No 92
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.87 E-value=4.6e-09 Score=94.52 Aligned_cols=71 Identities=7% Similarity=0.069 Sum_probs=67.7
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
++..++|+||+.+|+++.|.|.+++++..|+..++++.|+++++|||+|.|++|.++.| +++++++||++.
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 66789999999999999999999999999999999999999999999999999999886 899999999975
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.87 E-value=1.5e-09 Score=113.16 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=61.2
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEE---ECCeEeccCCC----CCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLT---FGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLI---FgGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+.|.||. +|+++.++|++++||..||++|++++|||+++|+|+ |+|++|+|+.+ +|++|++|||+.
T Consensus 5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 47899996 899999999999999999999999999999999999 89999999874 899999999986
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.85 E-value=4.8e-09 Score=93.35 Aligned_cols=71 Identities=7% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
....++|+||+.+|+++.|.|.+++++..|+..++++.||+++++||+|+|++|.++.| +++++++||++.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999998886 899999999964
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.80 E-value=9.5e-09 Score=91.96 Aligned_cols=70 Identities=7% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
++..++|+||+ +|+++.|.|.+++++..|+..++++.|+++.++||+|+|++|.++.| +++++++||++.
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 56789999999 99999999999999999999999999999999999999999998886 899999999964
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.45 E-value=3.6e-07 Score=78.92 Aligned_cols=71 Identities=27% Similarity=0.318 Sum_probs=60.4
Q ss_pred CCCceEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC------eE-eccCC-C----CCCCCC
Q 006461 37 PAGRRRVFVQT---ETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD------MV-LKNDL-S----AVRNDS 101 (644)
Q Consensus 37 ~sd~~qIfVKT---ltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG------r~-LeDd~-t----gI~~dS 101 (644)
.++.+.|+|++ .+|..+.+.+.+++||.+||.+|+...|+|+..|+|.|.+ .. |.||. + +|++++
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 45678899987 5889999999999999999999999999999999999873 22 54544 3 999999
Q ss_pred ceeeec
Q 006461 102 PLLLTR 107 (644)
Q Consensus 102 tLHLvR 107 (644)
+||++.
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999964
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.37 E-value=1.2e-06 Score=79.65 Aligned_cols=73 Identities=8% Similarity=0.159 Sum_probs=65.8
Q ss_pred CCCCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 35 KQPAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 35 ~~~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
|.+.+.++|.|++.+|+.+.|.|.+++++..|+...+++.|+++.++|++|.|++|.++.| +++++++|+++.
T Consensus 35 k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 35 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 3356789999999999999999999999999999999999999999999999999998876 899999999964
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.12 E-value=5.8e-06 Score=81.50 Aligned_cols=70 Identities=7% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+...++|.|+ .+|+.+.|.|.+++++..|+...+++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 5778999998 599999999999999999999999999999999999999999999886 999999999975
No 99
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.10 E-value=5.7e-06 Score=72.86 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=41.5
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEec
Q 006461 48 ETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLK 91 (644)
Q Consensus 48 ltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~Le 91 (644)
.++..+.+.|++++||..+|++|++++|||+++|+|+|+|++|.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 37888999999999999999999999999999999999999875
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.3e-05 Score=79.04 Aligned_cols=70 Identities=7% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.+.++|.|+ .+|+++.|.|.+++++..|+...+++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 54 p~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 54 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp -CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 5678999998 599999999999999999999999999999999999999999998886 999999999965
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.56 E-value=1.1e-05 Score=80.53 Aligned_cols=70 Identities=7% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.+-|+|+| +.+|+++.|.|.+++....|+...+++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 677899999 8999999999999999999999999999999999999999999998886 999999999964
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.51 E-value=0.00028 Score=69.26 Aligned_cols=70 Identities=7% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+++.+.|.|++ +|+.+.|.|.+++....|+...+++.|+++.++|++|.|+.+.++.+ .++++++|++.+
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 77788999998 89999999999999999999999999999999999999999988775 789999999965
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.29 E-value=0.00018 Score=60.86 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=53.8
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeE---e--ccCCC----CCCCCCceeee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMV---L--KNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~---L--eDd~t----gI~~dStLHLv 106 (644)
.|.|-||+..| +..|+|++++||.+||++|+++.+++++.|.|.++-.. | ..+.+ ||++|++|+|.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47789999888 77799999999999999999999999999998877554 3 23322 78889988874
No 104
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=97.03 E-value=0.00024 Score=75.10 Aligned_cols=143 Identities=16% Similarity=0.150 Sum_probs=82.5
Q ss_pred ccccCccCeEEEEEeCCCceEEEEecCCCCCCCCCCCCcccccccCCCCCCCccccCCcchhhhhhhhhcCCCCCCCCCc
Q 006461 165 IPVNGGLGGAYYFRNSRFENVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKRSVRVGETGIREVAAYLLDHDHFANVPPT 244 (644)
Q Consensus 165 ~~i~~GSgGSYf~~n~~Gk~vaVFKP~DEEP~a~nNPk~f~~r~~g~~g~krG~lvge~a~REVAAYLLD~~gf~~VP~T 244 (644)
.++..|++|.|||+.. ....|.|+.. + -..|+-||.|-...---+|..
T Consensus 75 ~~s~~Gstgvff~~td--~~~~VVK~s~-------------------------~-----l~~E~l~s~LA~~LGlpiP~~ 122 (342)
T 1cja_A 75 ERSEKGTEGLFFVETE--SGVFIVKRST-------------------------N-----IESETFCSLLCMRLGLHAPKV 122 (342)
T ss_dssp EECCSTTSCEEEEEES--SCEEEEECCT-------------------------T-----HHHHHHHHHHHHHHTCCCCCE
T ss_pred EeccCCCCCeEEEEeC--CCEEEEeCcH-------------------------H-----HHHHHHHHHHHHHhCCCCCCe
Confidence 3568899999999972 3477778541 1 156777777766534558999
Q ss_pred eEEEeeccccccC--C--CCCCcccCCCCCCC-ccceeeeccccCcccCCCCC----CCCCc---ccccccceeeeEeec
Q 006461 245 ALVKIRHSIFNIN--D--GVNGHKTHNKNLVS-KIASFQQFIKHNFDASDHGT----SSFPV---SEVHHIGILDIRIFN 312 (644)
Q Consensus 245 ~lV~l~hp~Fn~~--~--~~~~~~~~~~~~p~-KiGSlQ~FV~~d~~a~d~g~----~~Fpv---~evhKIaILDiri~N 312 (644)
.+|+...+-|.-- . ..+.....-+..-. ...=++.|+++..-. ++.. ..|.. .++-||.+||+.|+|
T Consensus 123 Riv~~~~~E~~e~~~~L~~~~~~~~~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~LG~Ii~FDi~InN 201 (342)
T 1cja_A 123 RVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQLGSLMALDVIVNN 201 (342)
T ss_dssp EEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred eEEeeCcHHHHHHHHHHHHhhhhhHHHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhhchhheehhhhcC
Confidence 9998764433100 0 00000000000001 112346777643311 1111 22333 244579999999999
Q ss_pred CCCC------CC---ceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 313 TDRH------AG---NLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 313 tDRh------~G---NiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.||- .| |||+... ...+++|||++||-.
T Consensus 202 ~DR~Pl~W~n~GN~~NIL~~~~-------n~~~~~IDhn~af~~ 238 (342)
T 1cja_A 202 SDRLPIAWTNEGNLDNIMLSER-------GATVVPIDSKIIPLD 238 (342)
T ss_dssp CSSSCSSSCSCCCGGGEEEESB-------TTCEEECSCCCCCCC
T ss_pred CccCcccccCCCChhheEEeCC-------CCeEEEEcCCccccC
Confidence 9997 33 6687652 128999999999987
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.72 E-value=0.00024 Score=75.51 Aligned_cols=70 Identities=7% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
++..+.|.|++ +|+++.|.|.++++...|+...+++.|++++++|++|+|++|.++.| +++++++|+++.
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 67788999998 79999999999999999999999999999999999999999998886 899999999964
No 106
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.64 E-value=0.0092 Score=52.57 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=62.5
Q ss_pred CCCceEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceee
Q 006461 37 PAGRRRVFVQTETGC-VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLL 105 (644)
Q Consensus 37 ~sd~~qIfVKTltGk-t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHL 105 (644)
....+.|.|+..+|+ .+.|.|.++.+...|.....++.|+++..-|++|.|..|..+.| +++++.+|.+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 456788999999995 89999999999999999999999999999999999999998887 8999998865
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.38 E-value=0.00055 Score=72.26 Aligned_cols=70 Identities=7% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+.+.+.|.|++ +|.++.|.|.++++...|+...+++.|+++.++|++|+|++|.++.| +++++.+|+++.
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 56778899998 89999999999999999999999999999999999999999998886 899999999964
No 108
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=96.31 E-value=0.00065 Score=70.72 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=39.0
Q ss_pred ccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEee-cCcccCCCcC
Q 006461 298 SEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPI-DHGLCLPETL 349 (644)
Q Consensus 298 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DHGlcfP~~~ 349 (644)
.++-++.|||++|+|+|||..||=+-... ..|.++|.|+ |||.++...+
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~~---~tg~~~LAP~YD~~~s~~~~~ 188 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRAS---NSKEYQIAPIFDCGSCLYPQA 188 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEES---SSSCEEECCBCCCTTSSCTTC
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEEC---CCCCEEecCcccccccccccC
Confidence 45779999999999999999999665532 1246899998 9999886644
No 109
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.05 E-value=0.02 Score=50.09 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=62.3
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
+..|.|.|-+.+|+..++.|.++.++.+|-++--+++|+.+++-.|.|+++.|+=... |+-+++.|-|+.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999976664 999999999985
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.87 E-value=0.017 Score=53.34 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=36.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTD 79 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~e 79 (644)
-+.|+.++|...++.|+.+.+|..++..|..+.||+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 59999999999999999999999999999999999854
No 111
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.22 E-value=0.083 Score=46.65 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=63.3
Q ss_pred CCCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCC----CCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~t----gI~~dStLHLvR 107 (644)
....+.|.|+. .|..+.|.|.++.....|..-.+++.|+++..-|++|+|..+..+.| +++++.+|..++
T Consensus 18 ~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 18 TPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 34458889995 79999999999999999999999999999999999999999999887 999999998864
No 112
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=94.32 E-value=0.22 Score=42.90 Aligned_cols=67 Identities=7% Similarity=0.126 Sum_probs=59.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CcEEEECCeEeccCCC----CCCCCCceeee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTD-ESSLTFGDMVLKNDLS----AVRNDSPLLLT 106 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~e-qQRLIFgGr~LeDd~t----gI~~dStLHLv 106 (644)
++.+.+++.....+.|.|.++.+|..+=..-.++.|||+. .-||+|.|..|..+.+ .+.++..|..+
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 5678889988899999999999999999999999999998 7899999999987775 78888887764
No 113
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=84.14 E-value=3 Score=34.72 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=51.4
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEec--c-CCC----CCCCCCceee
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLK--N-DLS----AVRNDSPLLL 105 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~Le--D-d~t----gI~~dStLHL 105 (644)
+.-+|-||..+|+.+.-....++||..|..-|.. .+.+.....|+-. .+.|. | +.+ |+.+.++|++
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 3467999999999998899999999999999887 6777777888744 67784 2 223 6767777766
No 114
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=80.59 E-value=0.6 Score=52.86 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=34.5
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--+.|.=|++.=.|||.+||||.. .++++-||=|.||-.
T Consensus 463 S~A~ySvv~YILGigDRH~~NILld~--------tG~v~HIDFG~~f~~ 503 (614)
T 3ls8_A 463 SCAGYCVITYILGVGDRHLDNLLLTK--------TGKLFHIDFGYILGR 503 (614)
T ss_dssp HHHHHHHHHHHHTCCCCCTTSEEECT--------TSCEEECCCSSCTTC
T ss_pred HHHHHhHhheeeeccCCCCcceeEcC--------CCCEeeeehHHhhcc
Confidence 34556778889999999999999964 579999999999965
No 115
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=80.05 E-value=0.78 Score=49.09 Aligned_cols=46 Identities=26% Similarity=0.237 Sum_probs=35.8
Q ss_pred ccccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEee-cCcccCCC
Q 006461 298 SEVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPI-DHGLCLPE 347 (644)
Q Consensus 298 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DHGlcfP~ 347 (644)
.++-|..||.++|+|+|-|..|+=+-.. ..|..+|.|+ |--.+.|.
T Consensus 293 ~~~~rr~vfn~ligN~D~H~KN~s~l~~----~~g~~~LaPaYDl~~~~~~ 339 (440)
T 3tpd_A 293 YDFMKFQVFQWLIGATDGHAKNFSVFIQ----AGGSYRLTPFYDIISAFPV 339 (440)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGCEEEEC----GGGCEEECCCCCCCCSGGG
T ss_pred HHHHHHHHhhHhhcCCcCCccceEEEEc----CCCceEECchhhccccccc
Confidence 3556778999999999999999988763 2357899999 76555554
No 116
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=76.19 E-value=6.8 Score=33.67 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=41.3
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD 87 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG 87 (644)
..+.|.|... -++.|.|-++-+..+|..+|.++++++++.-.|-|.+
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3467777764 7999999999999999999999999998888999985
No 117
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=75.38 E-value=1.1 Score=51.61 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=34.8
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--++|.=|++.=.|||.+||||.. .++++.||=|.||-.
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~--------tG~v~HIDFG~~f~~ 577 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT--------NGKLFHIDFGYILGR 577 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT--------TSCEEECCCCSCTTC
T ss_pred HHHHHHHHHHHccCCCCCCcceEEeC--------CCCEEEEeehhhhcc
Confidence 34557788889999999999999974 579999999999965
No 118
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=74.26 E-value=2.2 Score=39.18 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=30.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE
Q 006461 52 VLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF 85 (644)
Q Consensus 52 t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF 85 (644)
..++.|-.++|+.++|.+|++.+|+|+++|||-.
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 4567899999999999999999999999999943
No 119
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=69.65 E-value=1.6 Score=51.77 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=34.2
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--+.|.=|++.=.|||.+|||+.. .++++.||=|.||-.
T Consensus 774 S~A~~Svv~YILGlgDRH~~NILid~--------tG~v~HIDFG~~f~~ 814 (940)
T 2wxf_A 774 SCAGYCVATYVLGIGDRHSDNIMIRE--------SGQLFHIDFGHFLGN 814 (940)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGEEEET--------TSCEEECCCCCCTTC
T ss_pred HHHHHHHHHHHhccCCCCcccEEEec--------CCCEEEEeehhhhcc
Confidence 34556777788888999999999975 569999999999954
No 120
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=68.92 E-value=20 Score=32.36 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHH--hCCCC------CCcEEEEC----CeEecc
Q 006461 49 TGCVLGMDLDRSDNAHTVKRRLQLA--LNVPT------DESSLTFG----DMVLKN 92 (644)
Q Consensus 49 tGkt~~~eVd~sdTV~~VKqkIqek--eGIP~------eqQRLIFg----Gr~LeD 92 (644)
.+..+.+.|-.+|||.+||+||-+. .|+|. ++..|-+. |+.|.|
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D 77 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSD 77 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCS
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccc
Confidence 3556888898999999999999987 45553 34456553 566765
No 121
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=68.29 E-value=44 Score=29.28 Aligned_cols=69 Identities=7% Similarity=0.032 Sum_probs=54.8
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEecc---CCC----CCCCCCceeeec
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLKN---DLS----AVRNDSPLLLTR 107 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~LeD---d~t----gI~~dStLHLvR 107 (644)
+.-+|-||..+|+.+.-....++||.+|.+-|....+.+.....|+-. -+.|.+ +.+ ++.+.++|++..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 346899999999999999999999999999999987777677778643 666752 223 777788888853
No 122
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=68.04 E-value=1.8 Score=51.49 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=32.2
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--+.|.=|++.=.|||.+||||.. .++++.||=|.||-.
T Consensus 790 S~A~ySvv~YILGigDRH~~NILid~--------tG~v~HIDFG~~f~~ 830 (961)
T 1e7u_A 790 SCAGYCVATFVLGIGDRHNDNIMISE--------TGNLFHIDFGHILGN 830 (961)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGEEEET--------TCCEEECCCCCC---
T ss_pred HHHHHHHHHHHccccCCCCcceEEec--------CCCEEEEeehhhhcc
Confidence 34556677788888999999999975 569999999999954
No 123
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=67.65 E-value=20 Score=32.31 Aligned_cols=69 Identities=10% Similarity=0.202 Sum_probs=53.8
Q ss_pred CCceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEec--c-CCC----CCCCCCceeeec
Q 006461 38 AGRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLK--N-DLS----AVRNDSPLLLTR 107 (644)
Q Consensus 38 sd~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~Le--D-d~t----gI~~dStLHLvR 107 (644)
.+..+|-||..+|+.+.-.+..++||..|..-|... +.+.....|+-. -+.|. | +.+ ++.+.++|++.+
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 445789999999999999999999999999999876 777677788744 77783 3 233 666777777754
No 124
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=67.39 E-value=2 Score=51.62 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=32.2
Q ss_pred ccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 300 VHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 300 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
+--+.|.=|++.=.|||.+|||+.. .++++.||=|.||-.
T Consensus 927 lA~ySvv~YILGlGDRH~~NILid~--------tG~v~HIDFG~~f~~ 966 (1092)
T 2y3a_A 927 CAGYCVASYVLGIGDRHSDNIMVKK--------TGQLFHIDFGHILGN 966 (1092)
T ss_dssp HHHHHHHHHHTTCCCCCTTTEEECT--------TSCEEECCCSCCSSC
T ss_pred HHHHHHHHHHhcCCCCCCccEEEec--------CCCEEEEeehhhhhc
Confidence 3445566677777999999999975 569999999999954
No 125
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=66.49 E-value=16 Score=30.14 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=44.6
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHLvR 107 (644)
|+|.||-.+.+...+++....||.+|=+ .+|||++.=-..-+|+.+..+.. .+++.|-+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~~--l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQS--VEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTSS--SCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHHC--CCCCEEEEEE
Confidence 7889998755556689999999987754 59999877766777887765543 3477777764
No 126
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=61.87 E-value=2.2 Score=51.23 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=35.1
Q ss_pred cccccceeeeEeecCCCCCCceEEeeeCCCCCCCceEEEeecCcccCCC
Q 006461 299 EVHHIGILDIRIFNTDRHAGNLLVRKLDGVGSFGQVELIPIDHGLCLPE 347 (644)
Q Consensus 299 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcfP~ 347 (644)
.+--++|.=|++.=.|||.+||||.. .++++.||=|.||-.
T Consensus 923 S~A~ysvv~YiLgigDRH~~NILid~--------tG~v~HIDFG~~f~~ 963 (1091)
T 3hhm_A 923 SCAGYCVATFILGIGDRHNSNIMVKD--------DGQLFHIDFGHFLDH 963 (1091)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEEET--------TSCEEECCCCCCSCC
T ss_pred HhhhhhheEEEEeecCCCCcceEEeC--------CCCEEEEeehhhhcc
Confidence 44556788899999999999999976 579999999999964
No 127
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=55.58 E-value=34 Score=29.91 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=52.0
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC--CeEeccC--CC----CCCCCCceeee
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG--DMVLKND--LS----AVRNDSPLLLT 106 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg--Gr~LeDd--~t----gI~~dStLHLv 106 (644)
+..+|-||..+|+.+.-....++||..|..=|... +..+...+|+-. .+.|..+ .+ |+.+.++|++.
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 45789999999999988999999999999988854 555566777644 6777633 33 88888888774
No 128
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=55.35 E-value=44 Score=29.51 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=49.7
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE-------CCeEeccCCC--------CCCCCCcee
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF-------GDMVLKNDLS--------AVRNDSPLL 104 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF-------gGr~LeDd~t--------gI~~dStLH 104 (644)
..-|.|=..+|...+|.|+.++|+.+|=+++.++.+...+.--=+| ..+.|+|+.. .+..++-+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~ 88 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV 88 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEE
Confidence 3456777899999999999999999999999999877655443333 2466777663 455566666
Q ss_pred eec
Q 006461 105 LTR 107 (644)
Q Consensus 105 LvR 107 (644)
+.+
T Consensus 89 F~k 91 (100)
T 1wgr_A 89 FRK 91 (100)
T ss_dssp ECS
T ss_pred Eec
Confidence 654
No 129
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=55.24 E-value=42 Score=31.03 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=40.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHH--hCCCC------CCcEEEEC----CeE-eccCC-C----------------CCC
Q 006461 49 TGCVLGMDLDRSDNAHTVKRRLQLA--LNVPT------DESSLTFG----DMV-LKNDL-S----------------AVR 98 (644)
Q Consensus 49 tGkt~~~eVd~sdTV~~VKqkIqek--eGIP~------eqQRLIFg----Gr~-LeDd~-t----------------gI~ 98 (644)
.+..+.+.|-.+|||.+||+||-++ .|+|. ++..|-+. |+. |.|.. + +|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4566888898999999999999987 45553 45566552 443 55422 2 677
Q ss_pred CCCceeeec
Q 006461 99 NDSPLLLTR 107 (644)
Q Consensus 99 ~dStLHLvR 107 (644)
+++||-|+.
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 777777753
No 130
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=52.84 E-value=39 Score=31.61 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=39.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHH--hCCCCC------CcEEEE--C--CeE-eccCC-------------C----CCCCC
Q 006461 51 CVLGMDLDRSDNAHTVKRRLQLA--LNVPTD------ESSLTF--G--DMV-LKNDL-------------S----AVRND 100 (644)
Q Consensus 51 kt~~~eVd~sdTV~~VKqkIqek--eGIP~e------qQRLIF--g--Gr~-LeDd~-------------t----gI~~d 100 (644)
..+.+.|-.+|||.+||+||-++ -|+|-. +-.|-+ | |+. |.|.. | +|.++
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 56889999999999999999998 566642 223433 1 443 55532 1 78888
Q ss_pred Cceeeec
Q 006461 101 SPLLLTR 107 (644)
Q Consensus 101 StLHLvR 107 (644)
++|-|+.
T Consensus 121 a~l~l~~ 127 (138)
T 2r2o_A 121 ATVALVP 127 (138)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 8888874
No 131
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=51.88 E-value=15 Score=37.58 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=37.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEe
Q 006461 49 TGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVL 90 (644)
Q Consensus 49 tGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~L 90 (644)
.-....+.+.+..|+..++++|++..+|++++|.|+|.+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 556667889999999999999999999999999999998544
No 132
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=51.34 E-value=30 Score=33.72 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=44.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-CcEEE--EC---CeEeccC-CC----CCCCCCceee-ecc
Q 006461 52 VLGMDLDRSDNAHTVKRRLQLALNVPTD-ESSLT--FG---DMVLKND-LS----AVRNDSPLLL-TRN 108 (644)
Q Consensus 52 t~~~eVd~sdTV~~VKqkIqekeGIP~e-qQRLI--Fg---Gr~LeDd-~t----gI~~dStLHL-vRn 108 (644)
.+++.+.+.+||.+|++++.+.++|+.+ +-||- +. ...|+|. .+ +|.++..|-| +||
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 4677889999999999999999999987 56873 32 2345553 33 8999998888 774
No 133
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=49.30 E-value=29 Score=34.13 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=43.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-CcEEEE-C----CeEeccC-CC----CCCCCCceee-ecc
Q 006461 52 VLGMDLDRSDNAHTVKRRLQLALNVPTD-ESSLTF-G----DMVLKND-LS----AVRNDSPLLL-TRN 108 (644)
Q Consensus 52 t~~~eVd~sdTV~~VKqkIqekeGIP~e-qQRLIF-g----Gr~LeDd-~t----gI~~dStLHL-vRn 108 (644)
.+++.+.+.+||.+|++++.+.++|+.+ +-||-. . -..|.|. .+ ++.++.+|-+ +||
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 4567789999999999999999999987 578843 3 3456654 33 7888888888 764
No 134
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=48.70 E-value=65 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHH--hCCCC
Q 006461 50 GCVLGMDLDRSDNAHTVKRRLQLA--LNVPT 78 (644)
Q Consensus 50 Gkt~~~eVd~sdTV~~VKqkIqek--eGIP~ 78 (644)
...+.+.|-.+|||.+||+||-+. .|+|.
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~ 56 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPC 56 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCG
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCc
Confidence 345888888999999999999987 46653
No 135
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.21 E-value=12 Score=41.32 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=29.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCcEE
Q 006461 52 VLGMDLDRSDNAHTVKRRLQLALNVPTDESSL 83 (644)
Q Consensus 52 t~~~eVd~sdTV~~VKqkIqekeGIP~eqQRL 83 (644)
...+.|.+++|+.++|++|++.+|+|+++|||
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~Rl 68 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRL 68 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEE
Confidence 34578999999999999999999999999999
No 136
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=43.00 E-value=47 Score=28.19 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=46.5
Q ss_pred eEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CcEEEECCeEeccCCC----CCCCCCcee
Q 006461 41 RRVFVQT--ETGCVLGMDLDRSDNAHTVKRRLQLALNVPTD-----ESSLTFGDMVLKNDLS----AVRNDSPLL 104 (644)
Q Consensus 41 ~qIfVKT--ltGkt~~~eVd~sdTV~~VKqkIqekeGIP~e-----qQRLIFgGr~LeDd~t----gI~~dStLH 104 (644)
+.|+|.- -.|+++-+.|....||..|++-+.+.++++.. +-|+.-.+..|.++.. +|.+|+.|-
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEE
Confidence 3455653 48999999999999999999999999988642 1244444666655442 788888764
No 137
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=41.07 E-value=1.2e+02 Score=24.11 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=42.9
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceeeec
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLLTR 107 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHLvR 107 (644)
.|+|.|.-..+ ...+++....||.+|.+++ +++++.-.+..+|..+..+. -+++++.|-++.
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-BCCTTCEEEEEE
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-cCCCCCEEEEEe
Confidence 47787754322 2456777888999998764 67655556677888776555 488888888763
No 138
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=40.47 E-value=66 Score=25.77 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=33.6
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCC--CCcEEEECCeEeccCCCCCCCCCceeee
Q 006461 55 MDLDRSDNAHTVKRRLQLALNVPT--DESSLTFGDMVLKNDLSAVRNDSPLLLT 106 (644)
Q Consensus 55 ~eVd~sdTV~~VKqkIqekeGIP~--eqQRLIFgGr~LeDd~tgI~~dStLHLv 106 (644)
+++ ...||.++.+.+..+.++.. ..-.+.-+|+.+.+..+-+++++.|.++
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 556 56799999999886543321 2234555676645444568888888876
No 139
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=40.47 E-value=82 Score=28.30 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=43.3
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCcEEEEC--CeEeccC
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLAL-NVPTDESSLTFG--DMVLKND 93 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqeke-GIP~eqQRLIFg--Gr~LeDd 93 (644)
..+|-||..+|..+.-.+..++||.+|..-|.... +.......|+-. -+.|.|+
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~ 108 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADE 108 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCST
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCC
Confidence 46799999999999999999999999999998863 344456777754 7777653
No 140
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=39.29 E-value=33 Score=28.23 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=40.4
Q ss_pred hHHHHHhhCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhccccCCCCCChHHHHHHHHHHHHHH
Q 006461 382 DCEMLRRELPMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSREFRAGEEEPSELEVVCIEARRLVEE 452 (644)
Q Consensus 382 D~~~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~~~~~~e~pS~lE~~~~~A~~~~~~ 452 (644)
..+.|+..+..|.+.+.++|.+.- -.|+|..|||.+|--.- +.+...+.+|++.+.+
T Consensus 27 ~~~~l~~~l~~L~~~~r~vl~l~~-------~~g~s~~eIA~~lgis~-------~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 27 DRLLIADALAQLSAEHRAVIQRSY-------YRGWSTAQIATDLGIAE-------GTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH-------TSCCCHHHHHHHHTSCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-------HcCCCHHHHHHHHCcCH-------HHHHHHHHHHHHHHHH
Confidence 445566666566677777665543 48999999999986542 6788888888877654
No 141
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=36.95 E-value=1.4e+02 Score=25.17 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=27.4
Q ss_pred CceEEEEEeC------CC-cEEEEEecCCCCHHHHHHHHHHHh
Q 006461 39 GRRRVFVQTE------TG-CVLGMDLDRSDNAHTVKRRLQLAL 74 (644)
Q Consensus 39 d~~qIfVKTl------tG-kt~~~eVd~sdTV~~VKqkIqeke 74 (644)
+.|+|.||-- .| ....+++....||.+|.+.+....
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHC
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHC
Confidence 3578888843 34 477888888899999999988874
No 142
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=35.28 E-value=74 Score=32.80 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=49.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCcEEEE------CCeEeccCCC----CCCCCCceeeec
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALN----VPTDESSLTF------GDMVLKNDLS----AVRNDSPLLLTR 107 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeG----IP~eqQRLIF------gGr~LeDd~t----gI~~dStLHLvR 107 (644)
.+.|.-. +-+-++++++++||.++-.+|.++.. .+.++--|.- .|+-|+++++ ++++++.|+..+
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3444444 77888999999999999999998853 2456667766 2567888775 899999999865
No 143
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=35.28 E-value=45 Score=33.63 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=36.6
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPT 78 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~ 78 (644)
..+.+.|..++|....+.|+++.|+.+|=++|.++.|+..
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 4578999999999999999999999999999999999973
No 144
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=31.95 E-value=34 Score=27.43 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCHHHHHHhHhhcc
Q 006461 406 IFLKEAAEFGLCLSEIGEMMSREF 429 (644)
Q Consensus 406 ~~Lk~~a~~gLtl~eIg~~m~R~~ 429 (644)
.|+++|-+.|+|+.||..++....
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc
Confidence 678999999999999999997664
No 145
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=31.89 E-value=55 Score=32.38 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=34.0
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPT 78 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~ 78 (644)
+.|.|...+| ++.+.|+++.|+.+|=++|..+.|+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 5788999998 789999999999999999999999973
No 146
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=31.19 E-value=60 Score=32.58 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=35.5
Q ss_pred CceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 006461 39 GRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPT 78 (644)
Q Consensus 39 d~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~ 78 (644)
..+.+.|..++| ++.+.|+++.|+.+|=++|..+.|+..
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 357789999999 899999999999999999999999973
No 147
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=30.80 E-value=65 Score=28.46 Aligned_cols=51 Identities=8% Similarity=0.179 Sum_probs=37.4
Q ss_pred CCCceEEEEEeCC-------CcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----cEEEECC
Q 006461 37 PAGRRRVFVQTET-------GCVLGMDLDRSDNAHTVKRRLQLALNVPTDE-----SSLTFGD 87 (644)
Q Consensus 37 ~sd~~qIfVKTlt-------Gkt~~~eVd~sdTV~~VKqkIqekeGIP~eq-----QRLIFgG 87 (644)
|.+.+.|.|...+ +.++++-|.++.+-.+|..+|.++++++..+ -+|-|.+
T Consensus 2 ~~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 2 PLGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CSSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CCccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 3344566665432 6689999999999999999999999876333 3666665
No 148
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.47 E-value=96 Score=28.60 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=24.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHH----hCCCCC
Q 006461 51 CVLGMDLDRSDNAHTVKRRLQLA----LNVPTD 79 (644)
Q Consensus 51 kt~~~eVd~sdTV~~VKqkIqek----eGIP~e 79 (644)
..+.+.|-.+|||.+||+||-+. .|.|..
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys 71 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYG 71 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCS
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCC
Confidence 46888999999999999999876 388753
No 149
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=30.10 E-value=1.3e+02 Score=26.88 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCceEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCCC--CcEEEECC--eEe-ccC----CCCCCCCCcee
Q 006461 37 PAGRRRVFVQTETG---CVLGMDLDRSDNAHTVKRRLQLALNVPTD--ESSLTFGD--MVL-KND----LSAVRNDSPLL 104 (644)
Q Consensus 37 ~sd~~qIfVKTltG---kt~~~eVd~sdTV~~VKqkIqekeGIP~e--qQRLIFgG--r~L-eDd----~tgI~~dStLH 104 (644)
.|-...|+|...+. ..+++.|....-|+-|-.||-++..++-+ +.-|-.-. +-| .-. +|||+.|+.||
T Consensus 16 ~SWeL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ 95 (102)
T 2kmc_A 16 ASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLL 95 (102)
T ss_dssp CCEEEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEE
T ss_pred CcEEEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeee
Confidence 67788999999775 67888998889999999999999888644 22222221 112 111 24999999999
Q ss_pred eec
Q 006461 105 LTR 107 (644)
Q Consensus 105 LvR 107 (644)
+..
T Consensus 96 ftp 98 (102)
T 2kmc_A 96 FTP 98 (102)
T ss_dssp EEE
T ss_pred ccC
Confidence 964
No 150
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=28.90 E-value=2.2e+02 Score=24.55 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=37.1
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-cEEEECCe
Q 006461 43 VFVQTE-TGCVLGMDLDRSDNAHTVKRRLQLALNVPTDE-SSLTFGDM 88 (644)
Q Consensus 43 IfVKTl-tGkt~~~eVd~sdTV~~VKqkIqekeGIP~eq-QRLIFgGr 88 (644)
|.||.. .|..+.+.|+++.+-.++.++|++..+++.++ -.|-|-+.
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 556643 68999999999999999999999999998655 46666654
No 151
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.15 E-value=75 Score=26.50 Aligned_cols=70 Identities=11% Similarity=-0.052 Sum_probs=29.4
Q ss_pred cccccCCCCCCCCHHHHHHHHcCChhhhHHHHHhhCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhccccCCC
Q 006461 355 EWIHWPQASIPFSDDELEYIRKLDPLSDCEMLRRELPMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSREFRAGEE 434 (644)
Q Consensus 355 ~Wl~WPqA~~PFS~e~leyI~~LD~~~D~~~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~~~~~~e 434 (644)
+|...|+.-.+.+.+..+.|. ..+..|.+...++|.+ ...|+|..||+..|.-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~------------~~l~~Lt~~e~~vl~l--------~~~g~s~~eIA~~l~is~----- 56 (95)
T 3c57_A 2 GSSHHHHHHSSGLVPRGSHMQ------------DPLSGLTDQERTLLGL--------LSEGLTNKQIADRMFLAE----- 56 (95)
T ss_dssp -------------------------------------CCCHHHHHHHHH--------HHTTCCHHHHHHHHTCCH-----
T ss_pred CCCCCCCCCCCccHHHHHHHH------------HHHhcCCHHHHHHHHH--------HHcCCCHHHHHHHHCcCH-----
Confidence 366666666666666655443 2333344544444422 158999999999986542
Q ss_pred CCChHHHHHHHHHHHHH
Q 006461 435 EPSELEVVCIEARRLVE 451 (644)
Q Consensus 435 ~pS~lE~~~~~A~~~~~ 451 (644)
+.+...+..|++.+.
T Consensus 57 --~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 57 --KTVKNYVSRLLAKLG 71 (95)
T ss_dssp --HHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHc
Confidence 667777777776664
No 152
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=27.70 E-value=90 Score=24.34 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=38.1
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccCCCCCCCCCceeeec
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKNDLSAVRNDSPLLLTR 107 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd~tgI~~dStLHLvR 107 (644)
|.|+|.+.+|+.+ ++..+.|+.++-+.|....+- .---...+|+..+-+ +-+++|+.|-++.
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~~--~~vaa~vNg~lvdl~-~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLGD--HCIGAKVNHKLVPLS-YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHHH--TEEEEEETTEECCTT-CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhcccc--ceEEEEECCEEeCCC-cCcCCCCEEEEEE
Confidence 5688888789874 566789999998777432210 011113466544333 3477888887764
No 153
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=26.48 E-value=1.8e+02 Score=29.65 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=41.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC-------CeEeccCCC
Q 006461 43 VFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG-------DMVLKNDLS 95 (644)
Q Consensus 43 IfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg-------Gr~LeDd~t 95 (644)
|.|=..+|.+.+|.|++++|+.+|=+.+..+.+.+...-..+|. -+.|.|...
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~ 93 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHEN 93 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSB
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchh
Confidence 44446789999999999999999999999998877666666665 466766653
No 154
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=25.73 E-value=2.3e+02 Score=23.07 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=38.1
Q ss_pred CC-cEEEEEecCCCCHHHHHHHHHHHhC-C-----CC-----CCcEEEECCeEeccCCCCCCCCCceeee
Q 006461 49 TG-CVLGMDLDRSDNAHTVKRRLQLALN-V-----PT-----DESSLTFGDMVLKNDLSAVRNDSPLLLT 106 (644)
Q Consensus 49 tG-kt~~~eVd~sdTV~~VKqkIqekeG-I-----P~-----eqQRLIFgGr~LeDd~tgI~~dStLHLv 106 (644)
.| +...+++....||.+|.+.+..+.. + .. ..-.+.-+|+....+ +-+++++.|.++
T Consensus 15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-~~l~~gDeV~i~ 83 (89)
T 3po0_A 15 AGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-EATAAGDELALF 83 (89)
T ss_dssp HTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-SBCCTTCEEEEE
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-cccCCCCEEEEE
Confidence 45 5778888888899999999988752 1 00 113555566665543 347888888775
No 155
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=25.68 E-value=81 Score=32.49 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=35.7
Q ss_pred ceEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 006461 40 RRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPT 78 (644)
Q Consensus 40 ~~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~ 78 (644)
.+.+.|..++|....+.|+++.|+.+|=++|..+.|+..
T Consensus 85 ~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 356889999999999999999999999999999999973
No 156
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=23.63 E-value=44 Score=38.06 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=39.4
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECC-eEeccC
Q 006461 47 TETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGD-MVLKND 93 (644)
Q Consensus 47 TltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgG-r~LeDd 93 (644)
..+++...+.+.+..|+..++..|++..||+++.|.|++.. ..++..
T Consensus 318 ~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~ 365 (676)
T 3qa8_A 318 MVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSA 365 (676)
T ss_dssp SSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTT
T ss_pred ccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCC
Confidence 34677778999999999999999999999999999999984 344433
No 157
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.33 E-value=1.8e+02 Score=21.78 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=39.8
Q ss_pred hHHHHHhhCCcchHHHHHHHHHhHHHHHHHHHcCCCHHHHHHhHhhccccCCCCCChHHHHHHHHHHHHHH
Q 006461 382 DCEMLRRELPMIREACLRVLVLCTIFLKEAAEFGLCLSEIGEMMSREFRAGEEEPSELEVVCIEARRLVEE 452 (644)
Q Consensus 382 D~~~Lr~~l~~ir~~clr~l~i~T~~Lk~~a~~gLtl~eIg~~m~R~~~~~~e~pS~lE~~~~~A~~~~~~ 452 (644)
..+.|...+..|.+.+..++++.- ..|+|..||+..+--. ++.+...+..|.+.+.+
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~-------~~g~s~~eIA~~lgis-------~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQ-------LLGLSYADAAAVCGCP-------VGTIRSRVARARDALLA 61 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHH-------TSCCCHHHHHHHHTSC-------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-------HcCCCHHHHHHHHCcC-------HHHHHHHHHHHHHHHHH
Confidence 344566666667777777665433 3799999999998543 26778888888877653
No 158
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=21.60 E-value=1.8e+02 Score=22.65 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=37.1
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEECCeEeccC---CCCCCCCCceeeec
Q 006461 48 ETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFGDMVLKND---LSAVRNDSPLLLTR 107 (644)
Q Consensus 48 ltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd---~tgI~~dStLHLvR 107 (644)
++|+.+. +....||.+|.+++ +++...-.+..+|..+..+ .+-+++++.|-++.
T Consensus 5 vNg~~~~--~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 5 FNDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp ESSCEEC--CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred ECCEEEE--cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 3788764 46678999998875 5665555567778776532 24588888888763
No 159
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=21.22 E-value=1.1e+02 Score=30.25 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=22.4
Q ss_pred ccccceeec-cCChhHHHHHHHHHHHhhH
Q 006461 592 ACVSFVKLA-DLGEDEWTLFLEKFQELLY 619 (644)
Q Consensus 592 ~~~~~~~~~-~~~~~~w~~~~~~~~~~l~ 619 (644)
+.+-||++. +++++|=...-..+|-+|.
T Consensus 75 ~lMmFV~v~g~~Se~Ete~it~lWQtsL~ 103 (195)
T 2kgl_A 75 TLMMFVTVSGNPTEKETEEITSLWQGSLF 103 (195)
T ss_dssp CCEEEEESSSCSCHHHHHHHHHHHHHHGG
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 578899998 8999887667777777765
No 160
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=21.13 E-value=1.6e+02 Score=25.07 Aligned_cols=62 Identities=5% Similarity=0.093 Sum_probs=39.7
Q ss_pred CCCceEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCcEEEECCeEeccC---CCCCCCCCceeeec
Q 006461 37 PAGRRRVFVQTETGCVLGMDLDRS-DNAHTVKRRLQLALNVPTDESSLTFGDMVLKND---LSAVRNDSPLLLTR 107 (644)
Q Consensus 37 ~sd~~qIfVKTltGkt~~~eVd~s-dTV~~VKqkIqekeGIP~eqQRLIFgGr~LeDd---~tgI~~dStLHLvR 107 (644)
+...|+|+| +|+.+.+ +.. .||.+|.+++ +++++.-.+..+|..+..+ .+.+++++.|-++.
T Consensus 17 ~~~~M~I~v---NGe~~el--~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 17 IGGRHMLQL---NGKDVKW--KKDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp -----CEEE---TTEEECC--SSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CCcceEEEE---CCEEEEC--CCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 444577766 7886654 565 7999987764 6765555677788887543 24688888887763
No 161
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=20.95 E-value=2e+02 Score=27.82 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=35.6
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEE
Q 006461 42 RVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTF 85 (644)
Q Consensus 42 qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIF 85 (644)
.|.|=..+|.+.++.|++++|+.+|-+.|.++.+++.+..--+|
T Consensus 36 ~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 36 VVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred EEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 35555778999999999999999999999999998765543333
No 162
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=20.40 E-value=1.8e+02 Score=29.33 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=38.7
Q ss_pred eEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCcEEEEC-------CeEeccCCC
Q 006461 41 RRVFVQTETGCVLGMDLDRSDNAHTVKRRLQLALNVPTDESSLTFG-------DMVLKNDLS 95 (644)
Q Consensus 41 ~qIfVKTltGkt~~~eVd~sdTV~~VKqkIqekeGIP~eqQRLIFg-------Gr~LeDd~t 95 (644)
.-|.|=..+|...+|.|++++|+.+|=+.+.++.++..+.-..+|. .|.|+|...
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~ 70 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHEL 70 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSB
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchh
Confidence 3466667899999999999999999999988887766555566666 567777663
No 163
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2
Probab=20.23 E-value=63 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=27.3
Q ss_pred HHHHHcCCCCccccCccCeEEEEEeCCCceEEEEecCCCCC
Q 006461 155 VKAIKMGVDPIPVNGGLGGAYYFRNSRFENVAIVKPTDEEP 195 (644)
Q Consensus 155 ~~ai~~Gi~P~~i~~GSgGSYf~~n~~Gk~vaVFKP~DEEP 195 (644)
.+..+.|+.........+...|++|++|..+.|+-+..+++
T Consensus 82 ~~l~~~G~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 122 (141)
T 1npb_A 82 QRLEQAGVTIWKQNKSEGASFYFLDPDGHKLELHVGSLAAR 122 (141)
T ss_dssp HHHHHTTCCEEECCCSSSEEEEEECTTCCEEEEEECCHHHH
T ss_pred HHHHHCCCeEeccCCCceeEEEEECCCCCEEEEEECchhhh
Confidence 34445687544333333456788899999999998766554
Done!