BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006464
(644 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa]
gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa]
Length = 646
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/640 (78%), Positives = 558/640 (87%), Gaps = 1/640 (0%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++TIVWFRRDLRIEDNPALAAAARDG VFPV+ WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MDRSKTIVWFRRDLRIEDNPALAAAARDGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+LGQSLKSLGAELVL KT ST+AALL+CI I AT+VVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLGQSLKSLGAELVLIKTHSTVAALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
LGISVQSYNGDLLYEPWEIYDERGHAFTTF+AYWD+CL MQMEP S LPPWRLV AAGT+
Sbjct: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLVPAAGTV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CS+E+LGLEDE+EKSSN+LLGRGWSPGWSNADK LTEF EQHL+ Y ++R K+G ST
Sbjct: 181 MKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVG-TST 239
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQC+ +KQ+LWAKEEN GKESVT FLR++GLREYSRYLCFNF
Sbjct: 240 SLLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNF 299
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LL NLKYFPW+ + +FKAWRQGRTGYPLVDAGMRELWATGWIHN+IRVIVSS
Sbjct: 300 PFTHERSLLRNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSS 359
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVKVLLLPWRWGMKYFWDTLLDADLE DILGWQYISGSLPD HELERLD+PEIQGSKFD
Sbjct: 360 FAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPEIQGSKFD 419
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVR+WLPELARMP EWIHHPWDA VLKAAGVELG+NYPKPIID+DL RERL +A
Sbjct: 420 PEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLARERLMEA 479
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWEMEAA A ++NGTNEVV DN+D + AIP+VVL++K TCPT SSNDQ+VP+ Q
Sbjct: 480 IFKMWEMEAAARASNTNGTNEVVVDNTDDTENLAIPKVVLKDKVTCPTNSSNDQRVPTNQ 539
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISF 600
N KN RKR K +EEER PD+L++ N G + +D CSTAESS+AK+Q T++ SF
Sbjct: 540 NSKNIPAYRKRSKYMEEERPQPDKLHNDGNVVGTTRKDEDLCSTAESSSAKKQATSSCSF 599
Query: 601 SVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDG 640
SVP S SEGK LQE SSD+ +P Q QI+ EQ+SS DG
Sbjct: 600 SVPQYCSSSEGKPLQESESSDLRQPLQAQIEMEQSSSKDG 639
>gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis]
gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis]
Length = 640
Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/641 (75%), Positives = 539/641 (84%), Gaps = 4/641 (0%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M N+TIVWFRRDLRIEDNPALAAAARDG + PV+ WCP+EEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MSSNKTIVWFRRDLRIEDNPALAAAARDGCILPVFIWCPQEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+LG SLKSLGAEL+L KT STLAALL+C++ I ATKVVFN LYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLGHSLKSLGAELLLIKTHSTLAALLDCVNVIGATKVVFNRLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
LGIS+QSYNGDLLYEPWEIYDE GHAF TFD YWDKCL MQMEP S LPPWRLV AA T+
Sbjct: 121 LGISIQSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEPVSHLPPWRLVPAAETV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ CS+E+LGLEDE+EKSSN+LLGR WSPGWSNADK L EFVEQHL+ Y K R ++GGNST
Sbjct: 181 NSCSVEELGLEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEVGGNST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVF C+ MKQ+LWAKEEN G+ESVT FL+++GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLKSIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P+THER LSNL+ FPW+A+ +FKAWRQGRTGYPLVDAGMRELWATGWIHN+IRVIVSS
Sbjct: 301 PYTHERSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPWRWGMKYFWDTLLDAD+E DILGWQYISG LPDGHELERLDSPEIQGSKFD
Sbjct: 361 FAVKALLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGHELERLDSPEIQGSKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+GEYVRQWLPELARMPTEWIHHPWDAP VL+AAGVELG NYPKPI++LDL RERLT+A
Sbjct: 421 ADGEYVRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYPKPIVELDLARERLTEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IF+MWE A A S TNEVV DN+D AIP VVL+EK+ CPTISSNDQKVP+ Q
Sbjct: 481 IFRMWETAA--RASTSGETNEVVVDNTDGTGNLAIPNVVLKEKTPCPTISSNDQKVPTTQ 538
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISF 600
N K+ RKR K +EEER D+L++ N G DD CSTAESSA K+Q T+ ISF
Sbjct: 539 NPKSTPVHRKRSKYMEEERPQLDKLHN-HNVEGTYRIDDDLCSTAESSALKKQATSKISF 597
Query: 601 SVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGA 641
SVP + SE K+L E SSD+ + WQ QID E SS D A
Sbjct: 598 SVPQ-YCSSESKSLHEGESSDLKQSWQVQIDMEHGSSKDVA 637
>gi|359477655|ref|XP_002285169.2| PREDICTED: cryptochrome-2-like [Vitis vinifera]
gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/640 (73%), Positives = 540/640 (84%), Gaps = 1/640 (0%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+RT+VWFRRDLR++DNPALA AA++GSV PV+ WCPKEEGQFYPGRVSRWWLKQSL +L
Sbjct: 5 SRTVVWFRRDLRVDDNPALATAAKEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMHLK 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSL+SLGA+L+L K EST+ ALLECI AI ATK+V+NHLYDP+SLVRDHSIK+KL+ELG+
Sbjct: 65 QSLRSLGADLLLIKAESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKLMELGM 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
SVQSYNGDLLY+PW+IYD++G+AFTTF+AYW+KCL MQME S+LPPWRLV AAG ++ C
Sbjct: 125 SVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPWRLVPAAGKVNNC 184
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
SIE+LGLEDESEKSSNALLGRGWSPGWSNADK LTEF+EQHL Y K R K+ GNSTSLL
Sbjct: 185 SIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKRLKVEGNSTSLL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYLHFGELSVRKV + MKQ+LW KE N +ESV FLRA+GLREYSRYLCFNFP T
Sbjct: 245 SPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCFNFPST 304
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
HERPLLSNLK+FPWHA +FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV
Sbjct: 305 HERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 364
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLLPW+WGMKYFWDTLLDADLE DILGWQYISGSLPDGHEL+RLDSPEIQGS +DPEG
Sbjct: 365 KFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGSNYDPEG 424
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EYVR WLPELAR+PTEWIHHPWDAP VLK+AGVELG NYPKPII++DL RERLT+AIF
Sbjct: 425 EYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERLTEAIFM 484
Query: 484 MWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGK 543
MWE +AA +SNGTNE V DNSD I+ +I V ++EK+ CPT SS+DQ+VP+FQN K
Sbjct: 485 MWEKDAATKVANSNGTNEEVVDNSDSIENLSIANVSVKEKTPCPTSSSHDQRVPTFQNSK 544
Query: 544 NNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVP 603
+ L +RKR K +E+E+ + L++ + G S A +D STAESS+AK+Q T+ SFSVP
Sbjct: 545 SGLLNRKRAKCIEDEKLSQNNLHNYDHGCGTSRADEDLRSTAESSSAKKQATSRTSFSVP 604
Query: 604 H-SFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAM 642
S SEG LQEY S + +PW EQI E+ SS DG M
Sbjct: 605 QSCSSSSEGNPLQEYESPGLKQPWPEQIVWEKTSSKDGTM 644
>gi|356576533|ref|XP_003556385.1| PREDICTED: cryptochrome-2-like [Glycine max]
Length = 634
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/644 (72%), Positives = 527/644 (81%), Gaps = 12/644 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST+ AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+Y E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ C +E+LGLE+ESEK SNALLGR WSPGW NADK LTEFVEQHLL Y K R K+GG+ST
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQ MKQILW E N G+ESV FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PEIQG KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGVKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVRQWLPELARMPTEWIHHPWDAP VL+AAGVELG NYPKPIID+DL RERLT+A
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE EAA A S +EVV DNS+ ++ +VV+ K+ C TIS+NDQKVP+ Q
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSNSLENLDTRKVVVLGKAPCSTISANDQKVPALQ 540
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ--TTTNI 598
+ KN P+RKRPK++ EE Q D + + G S D CSTA+SS+ K+Q +T++
Sbjct: 541 DSKNEPPTRKRPKHMVEEGQNQDNSQNHNKDTGMSSIDQDICSTADSSSCKKQCASTSSY 600
Query: 599 SFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAM 642
SFSVP S SS++ PWQ+Q D EQ+SS DGAM
Sbjct: 601 SFSVPQQCS----------SSSNLKWPWQDQTDMEQSSSKDGAM 634
>gi|401782500|dbj|BAM36553.1| cryptochrome 2 [Fragaria x ananassa]
Length = 646
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/643 (72%), Positives = 531/643 (82%), Gaps = 3/643 (0%)
Query: 1 MGG-NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
MG N+TIVWFRRDLRIEDNPALAAA RDG+VFPVY WCPK+EG FYPGRVSRWWLKQSL
Sbjct: 1 MGSSNKTIVWFRRDLRIEDNPALAAAVRDGAVFPVYIWCPKDEGHFYPGRVSRWWLKQSL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
++L QSLKSLGA+L L KT+ST++A+L+CI AI ATKVVFNHLYDPVSLVRDH+IK KLV
Sbjct: 61 AHLDQSLKSLGAQLALIKTDSTVSAILDCIQAIGATKVVFNHLYDPVSLVRDHNIKGKLV 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
ELGISVQSYN DLL+EPWEIYD +G FTTF YWDKCL M+ E + LPPW+L+QAAGT
Sbjct: 121 ELGISVQSYNADLLHEPWEIYDAKGQTFTTFKEYWDKCLNMERELVTFLPPWKLLQAAGT 180
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ SIE+LGLE+E+EKSSNALLGR W+PGWS ADK LTEF + HLL Y KNR KLGGNS
Sbjct: 181 VAKYSIEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKNRTKLGGNS 240
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLSPYLHFGE+SVRKVFQ MKQIL+AKE N G+ESVT FLRA+GLRE+SRY+CFN
Sbjct: 241 TSLLSPYLHFGEVSVRKVFQVARMKQILFAKEGNSLGEESVTLFLRAIGLREFSRYICFN 300
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FPFTHE+ LLSNL++FPW AD G FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS
Sbjct: 301 FPFTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 360
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SFAVKVLLLPW+WGMKYFWDTL+DADLE DILGWQYISGSLPDGHELERLDSPE+QGSKF
Sbjct: 361 SFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELERLDSPEVQGSKF 420
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+GEYVR WLPELAR+PTEWIHHPWD P NVL+ +GVELG+NYP+PII++DL RERLT+
Sbjct: 421 DPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLRVSGVELGVNYPRPIIEIDLARERLTE 480
Query: 480 AIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSF 539
AIFKMWE EAA A + NGTNEVV DNSD I+ IP+V+LR + C T SSNDQKVPS
Sbjct: 481 AIFKMWEKEAAAKAANLNGTNEVVVDNSDGIENLPIPKVILRNNTPCATYSSNDQKVPSC 540
Query: 540 QNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNIS 599
N + N K+ +ER PD ++ S A +D STAESS +K+QTT+ S
Sbjct: 541 HNSEGN--QLKKRSRCTQERPLPDNAHNTNPNEATSRAIEDRSSTAESSMSKKQTTSTTS 598
Query: 600 FSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAM 642
FSVP S S S+ E S ++ + WQE+ID E NSS DGA+
Sbjct: 599 FSVPQSCSSSKDNPFMESESCEMKQSWQERIDMEHNSSKDGAL 641
>gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum]
gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum]
Length = 629
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/641 (72%), Positives = 534/641 (83%), Gaps = 15/641 (2%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAARDGSVFPV+ WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLGA+LVL KT+STL ALLEC++AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGAKLVLIKTDSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
LGISV+SYNGDLLYEPWE+YDE+GHAFTTFD +W++CL QMEP S++PPW+L+ A G +
Sbjct: 121 LGISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ CSIEDLGLE+E EK SNALLGR WSPGW NA+K LTEF+++ LL Y KNRQK+GG+ST
Sbjct: 181 ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQ +KQI W E N GKESVT FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LL +L +FPW+AD NFK WRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 301 PFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LLLPW+WGMKYFWDTLLDADLECDILGWQYISG LPDGHELERLD PEI G+KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGAKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVRQWLPELARMPTEWIHHPW+AP +VL+A+GVELG NYP PIID+DL RE+LTQA
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDLAREKLTQA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE++AA A S +EVV DN ++ IP+V+L++K C TIS+NDQKVP+
Sbjct: 481 IFKMWEIQAASKASGSEARDEVVVDNENQ----DIPKVILKDKGPCVTISANDQKVPALP 536
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ-TTTNIS 599
+ KN LP RKR K +EE+ + + + + ++ S + CSTA+SSA K+Q +T+ +
Sbjct: 537 DPKNELPVRKRKKGMEEKGKEQESSVNNEKDSKVSSPDQETCSTADSSACKKQCSTSTYT 596
Query: 600 FSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDG 640
FSVP S SS++ WQEQID EQ+S DG
Sbjct: 597 FSVPQQCS----------SSSNLKWSWQEQIDMEQSSGKDG 627
>gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca]
gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca]
Length = 645
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/639 (72%), Positives = 529/639 (82%), Gaps = 3/639 (0%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+TIVWFRRDLRIEDNPALAAAARDG+VFPVY WCPK+EG FYPGRVSRWWLKQSL++L
Sbjct: 5 NKTIVWFRRDLRIEDNPALAAAARDGAVFPVYIWCPKDEGHFYPGRVSRWWLKQSLAHLD 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLKSLGA+L L KT+ST++ALL+CI AI ATKVVFNHLYDPVSLVRDH+IK KLVELGI
Sbjct: 65 QSLKSLGAQLALIKTDSTVSALLDCIQAIGATKVVFNHLYDPVSLVRDHNIKGKLVELGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
SVQSYN DLL+EPWE+YD +G FTTF YWDKCL M+ E + LPPW+L+QA G +
Sbjct: 125 SVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLNMERELVTFLPPWKLLQATGMVAKY 184
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+E+LGLE+E+EKSSNALLGR W+PGWS ADK LTEF + HLL Y KNR KLGGNSTSLL
Sbjct: 185 SLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKNRTKLGGNSTSLL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYLHFGE+SVRKVFQ MKQIL+AKE N G+ESVT FLRA+GLRE+SRY+CFNFPFT
Sbjct: 245 SPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRAIGLREFSRYICFNFPFT 304
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
HE+ LLSNL++FPW AD G FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV
Sbjct: 305 HEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 364
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
KVLLLPW+WGMKYFWDTL+DADLE DILGWQYISGSLPDGHELERLDSPE+QGSKFDP+G
Sbjct: 365 KVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELERLDSPEVQGSKFDPDG 424
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EYVR WLPELAR+PTEWIHHPWD P NVLK +GVELG+NYP+PII++DL RERLT+AIFK
Sbjct: 425 EYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRPIIEIDLARERLTEAIFK 484
Query: 484 MWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGK 543
MWE+EAA A + NGTNEVV DNSD I+ IP+V+LR + C T SSNDQKVPS N +
Sbjct: 485 MWEIEAAAKAANLNGTNEVVVDNSDGIENFPIPKVILRNNTPCATYSSNDQKVPSCHNSE 544
Query: 544 NNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVP 603
N R R +ER PD ++ S +D STAESS +K+QTT+ SFSVP
Sbjct: 545 GNQLKRSR---CTQERPLPDNGHNTNPNEATSRTIEDRSSTAESSMSKKQTTSTTSFSVP 601
Query: 604 HSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAM 642
S S S+ E S ++ + WQE+ID EQ+SS DGA+
Sbjct: 602 QSCSSSKDNPFMESESCEMKQSWQERIDMEQHSSKDGAL 640
>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
Length = 634
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/644 (71%), Positives = 525/644 (81%), Gaps = 12/644 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST+ AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+Y E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ C +E+LGLE+ESEK SNALLGR WSPGW NADK LTEFVEQHLL Y K R K+GG+ST
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQ MKQILW E N G+ESV FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHE ERLD+PEIQG KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHEPERLDNPEIQGVKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVRQWLPELARMPTEWIHHPWDAP VL+AAGVELG NYPKPIID+DL RERL +A
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLIEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE EAA A S +EVV DNS+ ++ +VV+ K+ C TIS+NDQKVP+ Q
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSNSLENLDTRKVVVLGKAPCSTISANDQKVPALQ 540
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ--TTTNI 598
+ KN P+RKRPK++ EE Q D + + G S D CSTA+SS+ K+Q +T++
Sbjct: 541 DSKNEPPTRKRPKHMVEEGQNQDNSQNHNKDTGMSSIDQDICSTADSSSCKKQCASTSSY 600
Query: 599 SFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAM 642
SFSVP S SS++ PWQ+Q D EQ+SS DGAM
Sbjct: 601 SFSVPQQCS----------SSSNLKWPWQDQTDMEQSSSKDGAM 634
>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
Length = 634
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/644 (71%), Positives = 522/644 (81%), Gaps = 12/644 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+ E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G I
Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKI 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ CS+E+LGLE+ESEK SNALLGR WSPGW NADK L EFVE HLL Y K R K+GG ST
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELS RKVFQ MKQILW E N G+ES FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PEIQG+KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVRQWLPELARMPTEWIHHPWDAP VL+AAGVELG NYPKPIID+DL RERLT+A
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE EAA A S +EVV DNS ++ +VV+ K+ C TIS+NDQKVP+ Q
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTVENLDTQKVVVLGKAPCATISANDQKVPALQ 540
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ--TTTNI 598
+ KN P+RKRPK++ EE Q D + + G S D CSTA+SS+ K+Q +T++
Sbjct: 541 DSKNEPPTRKRPKHMIEEGQNQDHSQNHNKDTGLSSIDQDICSTADSSSCKKQCASTSSY 600
Query: 599 SFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAM 642
SFSVP S SS++ PWQE+ID EQ+SS DGAM
Sbjct: 601 SFSVPQQCS----------SSSNLKWPWQEKIDMEQSSSKDGAM 634
>gi|351734424|ref|NP_001235220.1| cryptochrome 2 [Glycine max]
gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
Length = 634
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/644 (71%), Positives = 521/644 (80%), Gaps = 12/644 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPAL AAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+ E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G I
Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKI 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ CS+E+LGLE+ESEK SNALLGR WSPGW NADK L EFVE HLL Y K R K+GG ST
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELS RKVFQ MKQILW E N G+ES FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PEIQG+KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVRQWLPELARMPTEWIHHPWDAP VL+AAGVELG NYPKPIID+DL RERLT+A
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE EAA A S +EVV DNS ++ +VV+ K+ C TIS+NDQKVP+ Q
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTVENLDTQKVVVLGKAPCATISANDQKVPALQ 540
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ--TTTNI 598
+ KN P+RKRPK++ EE Q D + + G S D CSTA+SS+ K+Q +T++
Sbjct: 541 DSKNEPPTRKRPKHMIEEGQNQDHSQNHNKDTGLSSIDQDICSTADSSSCKKQCASTSSY 600
Query: 599 SFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDGAM 642
SFSVP S SS++ PWQE+ID EQ+SS DGAM
Sbjct: 601 SFSVPQQCS----------SSSNLKWPWQEKIDMEQSSSKDGAM 634
>gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera]
Length = 641
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/614 (73%), Positives = 522/614 (85%), Gaps = 1/614 (0%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+RT+VWFRRDLR++DNPALA AA++GSV PV+ WCPKEEGQFYPGRVSRWWLKQSL +L
Sbjct: 5 SRTVVWFRRDLRVDDNPALATAAKEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLMHLK 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSL+SLGA+L+L K EST+ ALLECI AI ATK+V+NHLYDP+SLVRDHSIK+KL+ELG+
Sbjct: 65 QSLRSLGADLLLIKAESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKLMELGM 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
SVQSYNGDLLY+PW+IYD++G+AFTTF+AYW+KCL QME S+LPPWRLV AAG ++ C
Sbjct: 125 SVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSXQMEFVSLLPPWRLVPAAGKVNNC 184
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
SIE+LGLEDESEKSSNALLGRGWSPGWSNADK LTEF+EQHL Y K R K+ GNSTSLL
Sbjct: 185 SIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKXRLKVEGNSTSLL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYLHFGELSVRKV + MKQ+LW KE N +ESV FLRA+GLREYSRYLCFNFP T
Sbjct: 245 SPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCFNFPST 304
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
HERPLLSNLK+FPWHA +FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV
Sbjct: 305 HERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 364
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLLPW+WGMKYFWDTLLDADLE DILGWQYISGSLPDGHEL+RLDSPEIQGS +DPEG
Sbjct: 365 KFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGSNYDPEG 424
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EYVR WLPELAR+PTEWIHHPWDAP VLK+AGVELG NYPKPII++DL RERLT+AIF
Sbjct: 425 EYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERLTEAIFM 484
Query: 484 MWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGK 543
MWE +AA +SNGTNE V DNSD I+ I V ++EK+ CPT SS+DQ+VP+FQN K
Sbjct: 485 MWEKDAAXKVANSNGTNEEVVDNSDXIENLXIANVXVKEKTPCPTSSSHDQRVPTFQNSK 544
Query: 544 NNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVP 603
+ L +RKR K +E+E+ + L++ + G S A +D STAESS+AK+Q T+ SFSVP
Sbjct: 545 SGLLNRKRAKCIEDEKLSQNNLHNYDHGCGTSRADEDLRSTAESSSAKKQATSRTSFSVP 604
Query: 604 H-SFSLSEGKALQE 616
S S+G LQE
Sbjct: 605 QSCSSSSKGNPLQE 618
>gi|343403537|dbj|BAK61591.1| cryptochrome2a [Glycine soja]
gi|343403539|dbj|BAK61592.1| cryptochrome2a [Glycine soja]
gi|343403541|dbj|BAK61593.1| cryptochrome2a [Glycine soja]
gi|343403543|dbj|BAK61594.1| cryptochrome2a [Glycine soja]
gi|343403545|dbj|BAK61595.1| cryptochrome2a [Glycine soja]
gi|343403547|dbj|BAK61596.1| cryptochrome2a [Glycine soja]
gi|343403549|dbj|BAK61597.1| cryptochrome2a [Glycine soja]
Length = 631
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/641 (71%), Positives = 518/641 (80%), Gaps = 12/641 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPAL AAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+ E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G I
Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKI 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ CS+E+LGLE+ESEK SNALLGR WSPGW NADK L EFVE HLL Y K R K+GG ST
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELS RKVFQ MKQILW E N G+ES FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PEIQG+KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVRQWLPELARMPTEWIHHPWDAP VL+AAGVELG NYPKPIID+DL RERLT+A
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE EAA A S +EVV DNS ++ +VV+ K+ C TIS+NDQKVP+ Q
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTVENLDTQKVVVLGKAPCATISANDQKVPALQ 540
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ--TTTNI 598
+ KN P+RKRPK++ EE Q D + + G S D CSTA+SS+ K+Q +T++
Sbjct: 541 DSKNEPPTRKRPKHMIEEGQNQDHSQNHNKDTGLSSIDQDICSTADSSSCKKQCASTSSY 600
Query: 599 SFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSND 639
SFSVP S SS++ PWQE+ID EQ+SS D
Sbjct: 601 SFSVPQQCS----------SSSNLKWPWQEKIDMEQSSSKD 631
>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
Length = 642
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/642 (71%), Positives = 519/642 (80%), Gaps = 12/642 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPAL AAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+ E G AFTTF+A+W KCL +QM+ S++PPW+L+ A G I
Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQMDIVSVVPPWQLIPAEGKI 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ CS+E+LGLE+ESEK SNALLGR WSPGW NAD+ L EFVE HLL Y K R K+GG ST
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELS RKVFQ MKQILW E N G+ES FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PEIQG+KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEYVRQWLPELARMPTEWIHHPWDAP VL+AAGVELG NYPKPIID+DL RERLT+A
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE EAA A S +EVV DNS ++ +VV+ K+ C TIS+NDQKVP+ Q
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTVENLDTQKVVVLGKAPCATISANDQKVPALQ 540
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ--TTTNI 598
+ KN P+RKRPK++ EE Q D + + G S D CSTA+SS+ K+Q +T++
Sbjct: 541 DSKNEPPTRKRPKHMIEEGQNQDHSQNHNKDTGLSSIDQDICSTADSSSCKKQCASTSSY 600
Query: 599 SFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSNDG 640
SFSVP S SS++ PWQE+ID EQ+SS DG
Sbjct: 601 SFSVPQQCS----------SSSNLKWPWQEKIDMEQSSSKDG 632
>gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris]
Length = 641
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/640 (71%), Positives = 527/640 (82%), Gaps = 8/640 (1%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
++TIVWFRRDLRIEDNPALAAAAR+GSVFPV+ W PKEEGQFYPGRVSRWWLKQSL +L
Sbjct: 5 SKTIVWFRRDLRIEDNPALAAAARNGSVFPVFIWSPKEEGQFYPGRVSRWWLKQSLIHLE 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLKSLGAELVL K +STL+ALL+CI A+ ATKVV+NHLYDPVSLVRDH+IK+KL ELGI
Sbjct: 65 QSLKSLGAELVLIKAQSTLSALLDCIEAVGATKVVYNHLYDPVSLVRDHNIKQKLGELGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
SVQSYNGDLL EPWE+YD+ G FTTFDAYW+K L++Q EP S LPPW+L+ AAG++ C
Sbjct: 125 SVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLRLQKEPVSHLPPWKLIPAAGSVKMC 184
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+E+LGLE+ESEKSSNALLG+GW+PGWSNADK LTEFVE LL Y K+R ++GGNSTSLL
Sbjct: 185 SVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVENQLLAYSKDRLRVGGNSTSLL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYLHFGE+SVRKVF + +KQILW KE N G ES + +LRA+GLREYSRY+CFNFPFT
Sbjct: 245 SPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGDESASLYLRAIGLREYSRYICFNFPFT 304
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
HER LL+NLK+FPW+AD FKAWRQGRTGYPLVDAGMRELWATGWIHN+IRVIV+SF V
Sbjct: 305 HERSLLNNLKFFPWNADQARFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVASFFV 364
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLLPW+WGMKYFWDTLLDADLE DI+GWQYISGSLPDGHELERLD+PE+QG +DPEG
Sbjct: 365 KFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLDNPEVQGFNYDPEG 424
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EYVR WLPELARMP EWIHHPWDAP VLKAAGVELG+NYP PIID+D+ R+RL QAIF
Sbjct: 425 EYVRHWLPELARMPAEWIHHPWDAPLTVLKAAGVELGMNYPNPIIDVDVARDRLMQAIFI 484
Query: 484 MWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGK 543
M E EAA NA D+NGTNEVVFDNS+ + P+VV + K CP+ SS DQ+VPS Q G
Sbjct: 485 MREKEAAANAADANGTNEVVFDNSENVGDSVNPKVV-KGKVPCPSSSSYDQRVPSMQKGS 543
Query: 544 NNLPSRKRPKNVEEERQYPDELYSC--KNEAGNSGAHDDFCSTAESSAAKRQ-TTTNISF 600
N +KRP VEEE+++ D SC K E S A DD CSTAESS+ K+Q TT+ SF
Sbjct: 544 TN---KKRPNPVEEEKKFKDNWLSCKIKTEGKISKADDDLCSTAESSSMKKQMTTSRNSF 600
Query: 601 SVPHSFSLS-EGKALQEYRSSDVNRPWQEQIDREQNSSND 639
SVP + S+S + K+ SS V +E+ID E NS +
Sbjct: 601 SVPQAISMSYDIKSFDGEASSHVKLQNEEEIDMEINSCKN 640
>gi|350536405|ref|NP_001234245.1| cryptochrome 2 [Solanum lycopersicum]
gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum]
gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum]
Length = 635
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/632 (70%), Positives = 518/632 (81%), Gaps = 8/632 (1%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+TIVWFRRDLRIEDNPALAAAAR+GSV PV+ WCPKEEGQFYPGRVSRWWLKQSL +L Q
Sbjct: 6 KTIVWFRRDLRIEDNPALAAAARNGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLIHLKQ 65
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SLKSLGAELVL K +STL+AL EC+ A+ ATKVV+NHLYDPVSLVRDH+IK+KL +LGIS
Sbjct: 66 SLKSLGAELVLMKAQSTLSALTECVDAVGATKVVYNHLYDPVSLVRDHNIKQKLGDLGIS 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQSYNGDLL EPWE+YD+ G FTTFDAYW+K L +Q EP S LPPWRL QAAG++ CS
Sbjct: 126 VQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLSIQNEPVSQLPPWRLTQAAGSVKMCS 185
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E+LGLE+ESEKSSNALLG+GW+PGWSNADK LTEFVE +LL Y K+R ++GGNSTSLLS
Sbjct: 186 VEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYSKDRLRVGGNSTSLLS 245
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYLHFGE+SVRKVF + +KQILW KE N GK+S T +LRA+GLREYSRY+CFNFPFTH
Sbjct: 246 PYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGKDSATIYLRAIGLREYSRYICFNFPFTH 305
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ER LL+NL++FPW+AD +FKAWRQGRTGYPLVDAGMRELWATGW+HN+IRVIVSSF VK
Sbjct: 306 ERSLLNNLRFFPWNADQAHFKAWRQGRTGYPLVDAGMRELWATGWVHNKIRVIVSSFFVK 365
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LLLPW+WGMKYFWDTLLDADLE DI+GWQYISGSLPDGHELERLD+PE+QG +DPEGE
Sbjct: 366 FLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLDNPEVQGFNYDPEGE 425
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR WLPELARMP EWIHHPWDAP NVLKAAGVELG+NYP PIID+D+ R+RL QAI M
Sbjct: 426 YVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNPIIDVDVARDRLMQAIIIM 485
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRI-QTPAIPQ-VVLREKSTCPTISSNDQKVPSFQNG 542
E EAA N +NGT EVVFDNS+ + + +IP+ V++ K CP+ SS DQ+VPS QN
Sbjct: 486 REKEAAVNTSHANGTVEVVFDNSENVGDSASIPKDDVVKGKEPCPSSSSYDQRVPSMQNV 545
Query: 543 KNNLPSRKRPKNVEEERQYPDELYSCKNE-AGNSGAHDDFCSTAESSAAKRQ-TTTNISF 600
RKRPK EE ++ D S KNE S D CSTAESS+ K+Q T + SF
Sbjct: 546 GT---YRKRPKPEEETKKLNDNKLSYKNERIKMSNVDGDLCSTAESSSMKKQMTVSRNSF 602
Query: 601 SVPHSFSLS-EGKALQEYRSSDVNRPWQEQID 631
SVP + ++S + K+ + SS V +E+ID
Sbjct: 603 SVPRTITMSHDRKSFDDEASSHVKLQKEEEID 634
>gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum]
Length = 597
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/603 (70%), Positives = 489/603 (81%), Gaps = 6/603 (0%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAARDGSVFPV+ WCPKEEGQFYPGRVSRWW+KQSL
Sbjct: 1 MGMNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLV 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLGA LV+ KT+STL ALLEC++A++ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGAGLVIIKTDSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G+SVQSYNGDLLYEPWEI+DE GHAFTTFD +W+ CL MQM+ S +PP +L+ A G +
Sbjct: 121 QGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ SIE LGLEDE EKSSN+ LGR WSPGWS +DK L EF+E +LL Y NR LGG+ST
Sbjct: 181 EKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPY+HFGELSVRKVFQ KQILW E N G+ES T FLRA+G REYSRYLCF+F
Sbjct: 241 SLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLCFSF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT ERPLL NLK+FPW+ D NFKAWRQGRTGYPLVDAGMRELWATGWIHN++RVIVSS
Sbjct: 301 PFTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LL+PW+WGMKYFWDTLLDADLE DILGWQYISGSLPDGH+LERLD PE+ G K+D
Sbjct: 361 FAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLGRKYD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEY+RQWLPELARMP EWIHHPWDAP VL A+GVELG NYPKPIID+DL RE+LTQA
Sbjct: 421 PAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQLTQA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE EAA A S+ + V D ++++ IP+V L++K S+NDQ VP Q
Sbjct: 481 IFKMWETEAATKA--SSSQDRQVVDENEKL---LIPKVFLKDKVPRGATSANDQTVPILQ 535
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISF 600
N K++ P KR K EE + PD+ + + S + CSTAESS +KRQ ++ SF
Sbjct: 536 NLKSDDPPNKRQKCTAEEDRKPDKSRNRSDHTEVSCIDQEDCSTAESS-SKRQCSSTSSF 594
Query: 601 SVP 603
SVP
Sbjct: 595 SVP 597
>gi|357439517|ref|XP_003590036.1| Cryptochrome 2B [Medicago truncatula]
gi|355479084|gb|AES60287.1| Cryptochrome 2B [Medicago truncatula]
Length = 600
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/604 (71%), Positives = 501/604 (82%), Gaps = 9/604 (1%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
NRTIVWFRRDLRIEDNPALAAAARDGSVFPV+ CPKEEGQFYPGRVSRWWLKQSL +L
Sbjct: 2 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVFICCPKEEGQFYPGRVSRWWLKQSLYHLD 61
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLKSLGA LV+ KT+STL ALLEC++A++A KVVFNHLYDPVSLVRDH+IKEKLVELGI
Sbjct: 62 QSLKSLGAGLVMIKTDSTLKALLECVNAVQAKKVVFNHLYDPVSLVRDHNIKEKLVELGI 121
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
SVQSYNGDLL+EPW+IYDE GHAFTTFD +W +CLQMQM+ S +PP +L+ A G ++
Sbjct: 122 SVQSYNGDLLHEPWDIYDESGHAFTTFDPFWSRCLQMQMKTYSTIPPCQLIPAQGKVEKH 181
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
SIE LGLEDE E SSNALL R WSPGWS +DK LTEFVE HL+ Y KNR LG +STSLL
Sbjct: 182 SIEQLGLEDELETSSNALLSRAWSPGWSKSDKALTEFVENHLIHYSKNRLNLGVDSTSLL 241
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPY+HFGELSVRKVFQ + KQILW E N G+ES TFFLRA+G REYSRYLCF+FPFT
Sbjct: 242 SPYIHFGELSVRKVFQLVRTKQILWKNEGNIVGEESATFFLRAIGFREYSRYLCFSFPFT 301
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
ERPLL NLK+FPW+ D FKAWR GRTGYPLVDAGMRELWATGWIHN++RVIVSSFAV
Sbjct: 302 VERPLLGNLKFFPWNTDPSKFKAWRLGRTGYPLVDAGMRELWATGWIHNKMRVIVSSFAV 361
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K+LL+PW+WGMKYFWDTLLDADLE DILGWQYISGSLPDGHELERLD PEIQG+K+DPEG
Sbjct: 362 KMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDPEG 421
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+RQWLPELAR+PTEWIHHPW+AP VLKA+G+ELG NYPKPII++DL RE+LTQAIFK
Sbjct: 422 EYIRQWLPELARIPTEWIHHPWNAPLTVLKASGIELGQNYPKPIIEIDLAREQLTQAIFK 481
Query: 484 MWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKS-TCPTISSNDQKVPSFQNG 542
MWE EAA A S +EVV D+S+ + +IP+V L++K+ T SSNDQKVP QN
Sbjct: 482 MWEDEAASKASTSENKHEVV-DDSENL---SIPKVFLKDKAPRGATSSSNDQKVPILQNP 537
Query: 543 K-NNLPSRKRPKNVEEERQYPDEL--YSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNIS 599
K ++ P+RK+ K +++E + D L S + + G S + CSTAESS+ ++ ++T S
Sbjct: 538 KIDDPPNRKKQKCMDKEDREQDSLSNLSKRTDTGVSCVDQEVCSTAESSSKRQSSST-CS 596
Query: 600 FSVP 603
F VP
Sbjct: 597 FYVP 600
>gi|359806729|ref|NP_001241551.1| cryptochrome-2-like [Glycine max]
gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max]
Length = 600
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/588 (72%), Positives = 484/588 (82%), Gaps = 7/588 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAA--RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQS 58
MG N+TIVWFRRDLRIEDNPALAAAA +DGSVFPVY WCPKEEGQFYPGRVSRWWLKQS
Sbjct: 1 MGMNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQS 60
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L++L +SLKSLGAEL+L KT+STL ALLEC++AI+ATKVVFNHLYDPVSLVRDH+IKEKL
Sbjct: 61 LAHLDKSLKSLGAELMLIKTDSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKL 120
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
VELGISV+SYNGDLL+EPW IYDE GHAFTTFD +W++CL MQM+ S++PP +L+ A G
Sbjct: 121 VELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKAFSLIPP-QLILAEG 179
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ CSIE LGLEDESEKSSNALLGR W PGW+ DK LTEFVEQHLL Y KNR K+GG+
Sbjct: 180 KVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHLLHYSKNRLKVGGD 239
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPY+HFGELSVRKVFQ KQILWA E N G+ES T FLRA+GLREYSRYLCF
Sbjct: 240 STSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRYLCF 299
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFP T E+PLL NL +FPW D NFKAWRQGRTGYPLVDAGMRELWATGWIHN+IRVIV
Sbjct: 300 NFPSTIEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIV 359
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK+LL+PWRWGMKYFWDTLLDADLE DILGWQYISG LPDGH+LERLD P I G+K
Sbjct: 360 SSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAIHGAK 419
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDPEGEYVRQWLPELARMP EWIHHPW+AP VL+A+GVELG NYPKPIID+D RE+LT
Sbjct: 420 FDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQAREQLT 479
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AIFKMWE EAA S +EVV D ++ AIP+V L++K + T SSNDQKVP+
Sbjct: 480 EAIFKMWENEAASKGSGSEERHEVV----DESESLAIPKVFLKDKVSHITSSSNDQKVPT 535
Query: 539 FQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAE 586
N + + P+RKRPK E Q + + + G S D STAE
Sbjct: 536 LDNPQIDPPNRKRPKCSAEVEQKQNNSRNLSKDTGVSSIDQDVSSTAE 583
>gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum]
gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum]
Length = 598
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/586 (71%), Positives = 474/586 (80%), Gaps = 4/586 (0%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAARDGSVFPV+ WCPKEEGQFYPGRVSRWW+KQSL
Sbjct: 1 MGMNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLV 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLGA LV+ KT+STL ALLEC++A++ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGAGLVIIKTDSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G+SVQSYNGDLLYEPWEI+DE GHAFTTFD +W+ CL MQM+ S +PP +L+ A G +
Sbjct: 121 QGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ SIE LGLEDE EKSSN+ LGR WSPGWS +DK L EF+E +LL Y NR LGG+ST
Sbjct: 181 EKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPY+HFGELSVRKVFQ KQILW E N G+ES T FLRA+G REYSRYLCF+F
Sbjct: 241 SLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLCFSF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT ERPLL NLK+FPW+ D NFKAWRQGRTGYPLVDAGMRELWATGWIHN++RVIVSS
Sbjct: 301 PFTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK+LL+PW+WGMKYFWDTLLDADLE DILGWQYISGSLPDGH+LERLD PE+ G K+D
Sbjct: 361 FAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLGRKYD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEY+RQWLPELARMP EWIHHPWDAP VL A+GVELG NYPKPIID+DL RE+LTQA
Sbjct: 421 PAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQLTQA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
I KMWE EAA A S +EVV +N + IP+V L++K S+NDQ VP Q
Sbjct: 481 ILKMWETEAATEASSSQDRHEVVDENEKLL----IPKVFLKDKVPRGATSANDQTVPILQ 536
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAE 586
N K++ P KR K EE + PD+ + + S + CSTAE
Sbjct: 537 NLKSDDPPNKRQKCTAEEDRKPDKSRNRSDHTEVSCIDQEDCSTAE 582
>gi|15219720|ref|NP_171935.1| cryptochrome 2 [Arabidopsis thaliana]
gi|30678870|ref|NP_849588.1| cryptochrome 2 [Arabidopsis thaliana]
gi|3913379|sp|Q96524.2|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light
photoreceptor
gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana]
gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana]
gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana]
gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana]
gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana]
gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana]
gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana]
gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana]
gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana]
gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana]
gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana]
gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana]
gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana]
gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana]
gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana]
gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana]
gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana]
gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana]
gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana]
gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407880|gb|AEM06547.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407916|gb|AEM06565.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407944|gb|AEM06579.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407982|gb|AEM06598.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407992|gb|AEM06603.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408026|gb|AEM06620.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408040|gb|AEM06627.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408054|gb|AEM06634.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408110|gb|AEM06662.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408120|gb|AEM06667.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408130|gb|AEM06672.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408156|gb|AEM06685.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408222|gb|AEM06718.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 612
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/571 (66%), Positives = 464/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/619 (63%), Positives = 478/619 (77%), Gaps = 30/619 (4%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHQGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG+EL L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVELGI
Sbjct: 65 QSLKALGSELTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVELGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG- 182
SVQS+NGDLLYEPWEIY E+G FT+F +YW KCL M +E + PPWRL+ ++
Sbjct: 125 SVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLIPITAAVEAV 184
Query: 183 --CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+++EK SNALL R WSPGWSNADK+L EF+++ L+ Y KN K+ GN+T
Sbjct: 185 WACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSNKVVGNAT 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLH+GE+SVR+VFQC MKQI+WA+++N EG+ES FL+ +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P IQG+KFD
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYVKPIVDIDTARELLTKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
I + E + M +E+V D+ ++ + +E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFGALEGNTV-----KETGLCPSVSSNDQQVPSAV 535
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAES---SAAKRQTTTN 597
+ KR K+VEEE + + S D+ +A ++T
Sbjct: 536 RYNGS----KRVKHVEEEER----------DMKKSRGFDEVMREERDLFSTAESSSSSTT 581
Query: 598 ISFSVPHSFSL-SEGKALQ 615
+ F V HS SL SEGK L+
Sbjct: 582 VRFLVSHSCSLVSEGKNLE 600
>gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana]
Length = 612
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/571 (66%), Positives = 464/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana]
gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana]
gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana]
Length = 612
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/571 (66%), Positives = 465/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FA+K LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D+ RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>gi|388330326|gb|AFK29441.1| cryptochrome 2 [Arabidopsis halleri subsp. gemmifera]
Length = 610
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/571 (66%), Positives = 463/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 63 QSLKALGSDLTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F +YW KCL M +E + PPWRL+ AA +
Sbjct: 123 SVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLMPITAAAEAV 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 243 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGAAPDEIVADSFEALEANTI-----KEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 534 RYNGSKRVKPGEEEERDMKKSRGFDERELFS 564
>gi|388330328|gb|AFK29442.1| cryptochrome 2 [Arabidopsis halleri subsp. halleri]
Length = 610
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/571 (66%), Positives = 463/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 63 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F +YW KCL M +E + PPWRL+ AA I
Sbjct: 123 SVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 243 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGAAPDEIVADSFEGLEANTI-----KEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 534 RYNGSKRVKPGEEEERDMKKSRGFDERELFS 564
>gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/571 (66%), Positives = 465/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 63 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 123 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 243 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FA+K LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D+ RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIARELLAKA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 534 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 564
>gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and
cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs
gb|W43661 and gb|Z25638 come from this gene [Arabidopsis
thaliana]
gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/571 (66%), Positives = 464/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 63 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 123 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 243 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 534 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 564
>gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana]
gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana]
gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana]
gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana]
gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana]
gi|343407876|gb|AEM06545.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407912|gb|AEM06563.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407950|gb|AEM06582.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408064|gb|AEM06639.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408220|gb|AEM06717.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 612
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/571 (66%), Positives = 464/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLGKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGASPDEIVADSLEALEANTI-----KEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRLKPEEEEERDMKKSRGFDERELFS 566
>gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/571 (66%), Positives = 464/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 63 QSLKALGSDLTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 123 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 243 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLGKA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGASPDEIVADSLEALEANTI-----KEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 534 RYNGSKRLKPEEEEERDMKKSRGFDERELFS 564
>gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana]
gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana]
gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana]
gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana]
gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana]
gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana]
gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana]
gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana]
gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana]
Length = 612
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/571 (66%), Positives = 463/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SV SYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/571 (66%), Positives = 463/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 63 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SV SYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 123 SVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 243 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 534 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 564
>gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus]
Length = 618
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/537 (70%), Positives = 449/537 (83%), Gaps = 13/537 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLT 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG+E L KT +T++A+L+C+ A ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSEPTLIKTHNTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV--QAAGTID 181
SVQSYNGDLLYEPWEIY E+G FT F++YW KCL M +E I PPWRL+ AAGT+
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVESVVIPPPWRLIPLTAAGTVW 184
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+LTEF+E+ L+ Y KN +K+ GNSTS
Sbjct: 185 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVVGNSTS 244
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGE+SVR+VFQC MKQI+WA+++N +G ES FLR +GLR+YSRY+CFNFP
Sbjct: 245 LLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGVESAVLFLRGIGLRDYSRYICFNFP 304
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSF
Sbjct: 305 FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 364
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
AVK LLLPW+WGMKYFWDTLLDADLECDI+GWQYISGSLPDGHEL+RLD+P IQG+K+DP
Sbjct: 365 AVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDP 424
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+AI
Sbjct: 425 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAI 484
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+ E + A D E+V D+ + ++ ++E CP SSNDQ+VPS
Sbjct: 485 SRTREAQIMIGAPD-----EIVADSFEALEAAN----TVKEHGYCP--SSNDQQVPS 530
>gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea]
Length = 619
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/536 (69%), Positives = 450/536 (83%), Gaps = 12/536 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L Q
Sbjct: 6 KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLTQ 65
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SLK+LG+EL L KT +T++A+L+C+ A ATKVVFNHLYDPVSLVRDH++KEKLVE GI+
Sbjct: 66 SLKALGSELTLIKTHNTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLVERGIA 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV--QAAGTIDG 182
VQSYNGDLLYEPWEIY E+G FT F++YW KCL M +E + PPWRL+ AA T+
Sbjct: 126 VQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLIPLTAAETVWA 185
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
CS+E+LGLE+E+EK SNALL R WSPGWSNADK+LTEF+E+ L+ Y KN +K+ GNSTSL
Sbjct: 186 CSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVVGNSTSL 245
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSPYLHFGE+SVR+VFQC MKQI+WA+++N +G+ES FLR +GLR+YSRY+CFNFPF
Sbjct: 246 LSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYICFNFPF 305
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
THE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSFA
Sbjct: 306 THEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFA 365
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLLPW+WGMKYFWDTLLDADLECDI+GWQYISGSLPDGHEL+RLD+P IQG+K+DPE
Sbjct: 366 VKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDPE 425
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+AI
Sbjct: 426 GEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIS 485
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+ E + M +E+V D+ + ++ ++E CP SSNDQ+VPS
Sbjct: 486 RTREAQ----IMIGAAPDEIVADSFEALEAAN----TVKEHGLCP--SSNDQQVPS 531
>gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/619 (63%), Positives = 479/619 (77%), Gaps = 30/619 (4%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG+EL L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVELGI
Sbjct: 65 QSLKALGSELTLIKTHNTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTVKEKLVELGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQS+NGDLLYEPWEIY E+G FT F +YW KCL M +E + PPWRL+ AA +
Sbjct: 125 SVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLMPISTAAEAV 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLH+GE+S+R++FQC MKQI+WA+++N EG ES FL+ +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW D+ FKAWRQGRTGYPLVDAGMRELWATGW+HNR+RVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRLRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P IQG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
I + E + M +E+V D+ + ++ + +E P++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVVDSFEALEGNTV-----KEPGLYPSVSSNDQQVPSAV 535
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAES---SAAKRQTTTN 597
+ KR K+VEEE + + S D+ +A ++T
Sbjct: 536 RYNGS----KRVKHVEEEER----------DMKKSRGFDEVMREERDLFSTAESSSSSTT 581
Query: 598 ISFSVPHSFSL-SEGKALQ 615
+ F V HS SL SEGK+L+
Sbjct: 582 VRFLVSHSCSLVSEGKSLE 600
>gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/619 (63%), Positives = 476/619 (76%), Gaps = 30/619 (4%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG+EL L KT +T++A+L+CI ATKVVF+HLYDPVSLVRDH++KEKLVELGI
Sbjct: 65 QSLKALGSELTLIKTHNTVSAILDCIRVTGATKVVFDHLYDPVSLVRDHTVKEKLVELGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL---VQAAGTI 180
SVQS+NGDLLYEPWEIY E+G FT F +YW KCL M +E + PPWRL AA +
Sbjct: 125 SVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIESVMLPPPWRLRPITAAADAV 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+++EK SNALL R WSPGWSNADK+L EF+++ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLH+GE+SVR+VFQC MKQI+WA+++N EG+ES FL+ +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW D+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P IQG+ FD
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGANFD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPEL R+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+A
Sbjct: 425 PEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
I + E + M +E+V D+ ++ + +E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFGALEGNTV-----KETGLCPSVSSNDQQVPSAV 535
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAES---SAAKRQTTTN 597
+ KR K+VEEE + + S D+ +A ++T
Sbjct: 536 RYNGS----KRVKHVEEEER----------DMKKSRGFDEVMREERDLFSTAESSSSSTT 581
Query: 598 ISFSVPHSFSL-SEGKALQ 615
+ F V HS SL SEGK L+
Sbjct: 582 VRFLVSHSCSLVSEGKNLE 600
>gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 612
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/571 (66%), Positives = 462/571 (80%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SV SYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C IE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
lyrata]
gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/564 (66%), Positives = 457/564 (81%), Gaps = 15/564 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTFIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F +YW KCL M +E + PPWRL+ AA +
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLMPITAAAEAV 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D++ RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIETARELLARA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFEALEANTI-----KEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQY 561
+ K P + +++++ R +
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGF 559
>gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana]
Length = 612
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/571 (66%), Positives = 462/571 (80%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L +T +T++A+L+CI TKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIQTHNTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTL DADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSVV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>gi|388330322|gb|AFK29439.1| cryptochrome 2 [Arabidopsis kamchatica]
Length = 610
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/571 (66%), Positives = 459/571 (80%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK LG++L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH+IKEKLVE GI
Sbjct: 63 QSLKVLGSDLTFIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTIKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F +YW KCL M +E + PPWRL+ AA +
Sbjct: 123 SVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLMPITAAAEAV 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLL PYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFN
Sbjct: 243 SLLPPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNS 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGAAPDEIVADSFEALEANTI-----KEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + ++V++ R + + EL+S
Sbjct: 534 RYNGSKRVKPGEEEERDVKKSRGFDERELFS 564
>gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana]
Length = 612
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/571 (66%), Positives = 461/571 (80%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L +T +T++A+L+CI TKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIQTHNTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LLLPW+WGMKYFWDTL DADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FGVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSVV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>gi|307141810|gb|ADN34696.1| cryptochrome 2a [Brassica napus]
gi|327082215|gb|AEA29690.1| cryptochrome 2a [Brassica napus]
Length = 621
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/536 (69%), Positives = 448/536 (83%), Gaps = 12/536 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L Q
Sbjct: 6 KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLTQ 65
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SLK+LG+EL L KT +T++A+L+C+ A ATKVVFNHLYDPVSLVRDH++KEKLVE GI+
Sbjct: 66 SLKALGSELTLIKTHNTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLVERGIA 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV--QAAGTIDG 182
VQSYNGDLLYEPWEIY E+G FT F++YW KCL M +E + PPWRL+ AA T+
Sbjct: 126 VQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLIPLTAAETVWA 185
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
CS+E+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN + + GNSTSL
Sbjct: 186 CSLEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKTVVGNSTSL 245
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSPYLHFGE+SVR+VFQC MKQI+WA+++N +G+ES FLR +GLR+YSRY+CFNFPF
Sbjct: 246 LSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYICFNFPF 305
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
THE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSFA
Sbjct: 306 THEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFA 365
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLLPW+WGMKYFWDTLLDADLECDI+GWQYISGSLPDGHEL+RLD+P IQG+K+DPE
Sbjct: 366 VKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDPE 425
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEY+RQWLPELAR+PTEWIHHPWDAP +LKA+GVELG NY KPI+D+D RE LT+AI
Sbjct: 426 GEYIRQWLPELARLPTEWIHHPWDAPLTILKASGVELGTNYAKPIVDIDTARELLTKAIS 485
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+ E + M +E+V D+ + ++ ++E CP SSNDQ+VPS
Sbjct: 486 RTREAQ----IMIGAAPDEIVADSFEALEAAN----TVKEHGLCP--SSNDQQVPS 531
>gi|315439454|gb|ADU19845.1| cryptochrome 2b [Brassica napus]
gi|327082233|gb|AEA29691.1| cryptochrome 2b [Brassica napus]
Length = 575
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/544 (69%), Positives = 450/544 (82%), Gaps = 16/544 (2%)
Query: 1 MGGNR-TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M NR TIVWFRRDLRIEDNPALAAAAR+GSVFPV+ WCP+EEGQF+PGR SRWW+KQSL
Sbjct: 1 MATNRKTIVWFRRDLRIEDNPALAAAAREGSVFPVFIWCPEEEGQFHPGRASRWWMKQSL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
++L QSLKSLG+ L KT ST++A+L+C+ + ATKVVFNHLYDPVSLVRDH++KEKLV
Sbjct: 61 AHLNQSLKSLGSHLTFIKTHSTVSAILDCVRSTGATKVVFNHLYDPVSLVRDHNVKEKLV 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL--VQAA 177
E GISVQ YNGDLLYEPWEI E G FT+F YW KCL M +E + PPWRL + AA
Sbjct: 121 ERGISVQGYNGDLLYEPWEINSENGKPFTSFAPYWKKCLDMSVESVMLPPPWRLMPLTAA 180
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ CSIE+LGLE+E+EK SNALL R WSPGWSNADK+LTEF+E+ L+ Y KN +K+ G
Sbjct: 181 EGVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIERQLIDYAKNSKKVVG 240
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
NSTS+LSPYLHFGE+SVR+VFQC+ MK+I+WA+++N EG+ES FFLR +G REYSRY+C
Sbjct: 241 NSTSMLSPYLHFGEISVRRVFQCVRMKKIIWARDKNSEGEESADFFLRGIGQREYSRYIC 300
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FNFPFTHE+ LLS+L++FPW AD+G FKAW QGRTGYPLVDAGMRELWATGW+HNRIRVI
Sbjct: 301 FNFPFTHEQSLLSHLRFFPWDADVGKFKAWSQGRTGYPLVDAGMRELWATGWMHNRIRVI 360
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
VSSFAVK LLLPW+WGMKYFWDTLLDADLECDI+GWQYISGSLPDGHEL+RLD+P IQG+
Sbjct: 361 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGA 420
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
K+DPEGEY+RQWLPELARMPTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 421 KYDPEGEYIRQWLPELARMPTEWIHHPWDAPSTVLKASGVELGANYAKPIVDIDTARELL 480
Query: 478 TQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQ---TPAIPQVVLREKSTCPTISSNDQ 534
T+AI + E + M +E+V D+ + ++ T +P ++ CP+ SSNDQ
Sbjct: 481 TKAISRTREAQ----IMIGAAPDEIVADSYEALEGNNTVKVPGLL------CPSASSNDQ 530
Query: 535 KVPS 538
+VPS
Sbjct: 531 RVPS 534
>gi|388330324|gb|AFK29440.1| cryptochrome 2 [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/564 (66%), Positives = 456/564 (80%), Gaps = 15/564 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 3 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 63 QSLKALGSDLTFIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F +YW KCL M +E + PPWRL+ AA +
Sbjct: 123 SVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLMPITAAAEAV 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y K+ +K+ GNST
Sbjct: 183 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKSSKKVVGNST 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 243 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 303 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGW YISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 363 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWLYISGSIPDGHELDRLDNPALQGAKYD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D++ RE L +A
Sbjct: 423 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIETARELLARA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 483 ISRTREAQ----IMIGAAPDEIVADSFEALEANTI-----KEPGLCPSVSSNDQQVPSAV 533
Query: 539 -FQNGKNNLPSRKRPKNVEEERQY 561
+ K P + +++++ R +
Sbjct: 534 RYNGSKRVKPEEEEERDMKKSRGF 557
>gi|304571332|dbj|BAJ15784.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571336|dbj|BAJ15786.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571338|dbj|BAJ15787.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571340|dbj|BAJ15788.1| cryptochrome2, partial [Cardamine nipponica]
Length = 590
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/612 (64%), Positives = 477/612 (77%), Gaps = 27/612 (4%)
Query: 13 DLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAE 72
DLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWWLKQSLS+L QSLK+LG+E
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALGSE 60
Query: 73 LVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDL 132
L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE+GISVQS+NGDL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 133 LYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTIDGCSIEDLG 189
LYEPWEIY E+G FT+F +YW KCL+M +E + PPWRL+ AA + CSIE+LG
Sbjct: 121 LYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACSIEELG 180
Query: 190 LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHF 249
LE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTSLLSPYLH+
Sbjct: 181 LENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHY 240
Query: 250 GELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309
GE+SVR+VFQC MKQI+WAK N EG ES FL+ +GLREYSRY+CFNFPFTHE+ LL
Sbjct: 241 GEISVRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYICFNFPFTHEQSLL 298
Query: 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLP 369
S+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSFAVK LLLP
Sbjct: 299 SHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKFLLLP 358
Query: 370 WRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
W+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P IQG+KFDPEG+Y+RQW
Sbjct: 359 WKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQW 418
Query: 430 LPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489
LPELAR+P+EWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+AI + E +
Sbjct: 419 LPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTREAQ- 477
Query: 490 ADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSR 549
M +E+V D+ ++ + +E CP++SSNDQ+VPS +
Sbjct: 478 ---IMIGAAPDEIVADSFTALEGNTV-----KETGLCPSVSSNDQQVPSAVRYNGS---- 525
Query: 550 KRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSL- 608
KR K VEEE + + C+ + D STA+SS ++T + F V HS SL
Sbjct: 526 KRVKQVEEEER---DKKKCRGLDEVTREERDLFSTADSS-----SSTTVRFLVSHSCSLV 577
Query: 609 SEGKALQEYRSS 620
SEGK L+ + S
Sbjct: 578 SEGKNLEGIQDS 589
>gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa]
gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/616 (67%), Positives = 464/616 (75%), Gaps = 53/616 (8%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++TIVWFRRDLRIEDNPALAA+ARDG VFPV+ WCPKE GQFYPGRVSRWWLKQS +
Sbjct: 1 MSSSKTIVWFRRDLRIEDNPALAASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQSFA 59
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
LGQSL+ T+ ALL+ I I AT V FNHLYDPVSLVRDH+IKEKLVE
Sbjct: 60 QLGQSLE----------ISCTVGALLDSIETIGATTVAFNHLYDPVSLVRDHNIKEKLVE 109
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
LGI VQSYNGDLLYEPWEIYDERG+AFTTF+AY DKC MQMEP S LPPWRLV AAGTI
Sbjct: 110 LGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEPVSHLPPWRLVPAAGTI 169
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CS+E+LGLEDE+EKSSN+LLGRGWSPGW NA HL+ + K+R ++G S
Sbjct: 170 VMCSVEELGLEDEAEKSSNSLLGRGWSPGWGNA----------HLVGHAKSRLRVGSFS- 218
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVF C+ MKQ+LW+KEEN GKESVT FLR++GLRE SRYLCFNF
Sbjct: 219 SLLSPYLHFGELSVRKVFWCVQMKQLLWSKEENSVGKESVTQFLRSIGLRECSRYLCFNF 278
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LLSNLKYFPW+A+ +FKAWRQGRTGYPLVD GMRELWA GWIHNRIR IVSS
Sbjct: 279 PFTHERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIGWIHNRIRAIVSS 338
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVKVLLLPWRWG+ DILGWQYISGSLPD HELERLD+PEIQGSKFD
Sbjct: 339 FAVKVLLLPWRWGLN-------------DILGWQYISGSLPDAHELERLDNPEIQGSKFD 385
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY L RMPTEWIHHP DAP LK A VELG+ RE L +A
Sbjct: 386 PEGEY-------LTRMPTEWIHHPGDAPITALKVAVVELGI----------FAREHLAKA 428
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
IFKMWE+EAA A +S+GT EVV DN+D + AIP+VVL+EK+ CP SSNDQ+VP+ Q
Sbjct: 429 IFKMWEVEAAARASNSSGTVEVVLDNTDDTKNLAIPKVVLKEKAPCPANSSNDQRVPTNQ 488
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISF 600
N KN RKR K +EEER P +L+S N S ++ CS A+SSA+K+Q T+ SF
Sbjct: 489 NYKNIPAHRKRSKFIEEERPQPYKLHSDDNVVRTSRKDEELCS-AQSSASKKQATSRCSF 547
Query: 601 SVPHSFSLSEGKALQE 616
SVP S SE K QE
Sbjct: 548 SVPRCCSSSECKPSQE 563
>gi|304571328|dbj|BAJ15782.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571330|dbj|BAJ15783.1| cryptochrome2, partial [Cardamine nipponica]
Length = 590
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/612 (64%), Positives = 477/612 (77%), Gaps = 27/612 (4%)
Query: 13 DLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAE 72
DLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWWLKQSLS+L QSL++LG+E
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALGSE 60
Query: 73 LVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDL 132
L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE+GISVQS+NGDL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 133 LYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTIDGCSIEDLG 189
LYEPWEIY E+G FT+F +YW KCL+M +E + PPWRL+ AA + CSIE+LG
Sbjct: 121 LYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACSIEELG 180
Query: 190 LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHF 249
LE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTSLLSPYLH+
Sbjct: 181 LENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHY 240
Query: 250 GELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309
GE+SVR+VFQC MKQI+WAK N EG ES FL+ +GLREYSRY+CFNFPFTHE+ LL
Sbjct: 241 GEISVRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYICFNFPFTHEQSLL 298
Query: 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLP 369
S+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSFAVK LLLP
Sbjct: 299 SHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKFLLLP 358
Query: 370 WRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
W+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P IQG+KFDPEG+Y+RQW
Sbjct: 359 WKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQW 418
Query: 430 LPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489
LPELAR+P+EWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+AI + E +
Sbjct: 419 LPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTREAQ- 477
Query: 490 ADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSR 549
M +E+V D+ ++ + +E CP++SSNDQ+VPS +
Sbjct: 478 ---IMIGAAPDEIVADSFTALEGNTV-----KETGLCPSVSSNDQQVPSAVRYNGS---- 525
Query: 550 KRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSL- 608
KR K VEEE + + C+ + D STA+SS ++T + F V HS SL
Sbjct: 526 KRVKQVEEEER---DKKKCRGLDEVTREERDLFSTADSS-----SSTTVRFLVSHSCSLV 577
Query: 609 SEGKALQEYRSS 620
SEGK L+ + S
Sbjct: 578 SEGKNLEGIQDS 589
>gi|304571334|dbj|BAJ15785.1| cryptochrome2, partial [Cardamine nipponica]
Length = 590
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/612 (64%), Positives = 475/612 (77%), Gaps = 27/612 (4%)
Query: 13 DLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAE 72
DLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWWLKQSLS+L QSLK+LG+E
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALGSE 60
Query: 73 LVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDL 132
L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE+GISVQS+NGDL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 133 LYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG---CSIEDLG 189
LYEPWEIY E+G FT+F +YW KCL+M +E + PPWRL+ + CSIE+LG
Sbjct: 121 LYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAATEAVWACSIEELG 180
Query: 190 LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHF 249
LE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTSLLSPYLH+
Sbjct: 181 LENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHY 240
Query: 250 GELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309
GE+SVR+VFQC MKQI+WAK N EG ES FL+ +GLREYSRY+CFNFPFTHE+ LL
Sbjct: 241 GEISVRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYICFNFPFTHEQSLL 298
Query: 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLP 369
S+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSFAVK LLLP
Sbjct: 299 SHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKFLLLP 358
Query: 370 WRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
W+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P IQG+KFDPEG+Y+RQW
Sbjct: 359 WKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQW 418
Query: 430 LPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489
LPELAR+P+EWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+AI + E +
Sbjct: 419 LPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTREAQ- 477
Query: 490 ADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSR 549
M +E+V D+ ++ + +E CP++SSNDQ+VPS +
Sbjct: 478 ---IMIGAAPDEIVADSFTALEGNTV-----KETGLCPSVSSNDQQVPSAVRYNGS---- 525
Query: 550 KRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSL- 608
KR K VEEE + + C+ + D STA+SS ++T + F V HS SL
Sbjct: 526 KRVKQVEEEER---DKKKCRGLDEVTREERDLFSTADSS-----SSTTVRFLVSHSCSLV 577
Query: 609 SEGKALQEYRSS 620
SEGK L+ + S
Sbjct: 578 SEGKNLEGIQDS 589
>gi|304571342|dbj|BAJ15789.1| cryptochrome2, partial [Cardamine alpina]
Length = 591
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/612 (64%), Positives = 476/612 (77%), Gaps = 26/612 (4%)
Query: 13 DLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAE 72
DLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSLS+L QSLK+LG+E
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALGSE 60
Query: 73 LVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDL 132
L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE+GISVQS+NGDL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 133 LYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTIDGCSIEDLG 189
LYEPWEIY E+G T+F +YW KCL+M +E + PPWRL+ AA + CSIE+LG
Sbjct: 121 LYEPWEIYCEKGKPLTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACSIEELG 180
Query: 190 LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHF 249
LE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTSLLSPYLHF
Sbjct: 181 LENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHF 240
Query: 250 GELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309
GE+S+R+VFQC MKQI+WAK N EG ES FL+ +GLREYSRYLCFNFPFTHE+ LL
Sbjct: 241 GEISIRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYLCFNFPFTHEQSLL 298
Query: 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLP 369
S+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSFAVK LLLP
Sbjct: 299 SHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLP 358
Query: 370 WRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
W+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P IQG+KFDPEG+Y+RQW
Sbjct: 359 WKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQW 418
Query: 430 LPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489
LPELAR+P+EWIHHPWDAP VLKA+GVELG NY KPI+D+D RE LT+AI + E +
Sbjct: 419 LPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTREAQ- 477
Query: 490 ADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSR 549
M +E+V D+ ++ + +E P++SSNDQ+VPS +
Sbjct: 478 ---IMIGVAPDEIVADSFTALEGNTV-----KETGLYPSVSSNDQQVPSAVRYNGS---- 525
Query: 550 KRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSL- 608
KR K VEEE + + C+ + D STA+SS+ ++T + F V HS SL
Sbjct: 526 KRVKQVEEEER---DKKKCRGLDEVTREERDLFSTADSSS----SSTTVRFLVSHSCSLV 578
Query: 609 SEGKALQEYRSS 620
SEGK L+ + S
Sbjct: 579 SEGKNLEGIQDS 590
>gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group]
Length = 651
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/612 (61%), Positives = 458/612 (74%), Gaps = 16/612 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFRRDLRI+DNPALAAAARDG V PV+ WCP +EGQFYPGR SRWWLKQSL +
Sbjct: 3 GSERTVVWFRRDLRIDDNPALAAAARDGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L QSL+SLG LVL + ESTL ALL CI ++ AT++V+NHLYDPVSLVRD IK++L L
Sbjct: 63 LSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG--T 179
GIS+QS+NGDLLYEPWEIYD+ G AFTTF+ YW+KC+++ ++ + L PW+LV A G +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLES 182
Query: 180 IDGCSIEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ CS++DLGLE + E+SSNALL R WSPGW NA+K+L EFV LL Y K+ K+ G
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLHFGE+SVRKV+Q + M+QI W E E +ES+ FF+R++GLREYSRYLCF
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LL NLK++PW D FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI+
Sbjct: 303 NFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVII 362
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LL+PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PE+QG K
Sbjct: 363 SSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQK 422
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DP+G YVR W+PELARMPTEWIHHPWDAP +L+ AGVELG NYPKPI+DL + RE L
Sbjct: 423 YDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLD 482
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+I MW+++ A+ + +G EVV DN I+T IP+VVLRE S C DQ+VP
Sbjct: 483 DSISTMWQLDTAEKLAELDG--EVVEDNLSNIKTFDIPKVVLRETSPCAL--PIDQRVPH 538
Query: 539 FQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNI 598
+ +NL S K K D + S K EA + S A S +++++
Sbjct: 539 ASSKDHNLKS-KVLKASNRSSICVDMIRSSKMEATS--------SVANSPVSRKRSFCET 589
Query: 599 SFSVPHSFSLSE 610
+F VP S +E
Sbjct: 590 AFHVPSYSSSAE 601
>gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group]
gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group]
gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group]
Length = 651
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/612 (61%), Positives = 458/612 (74%), Gaps = 16/612 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFRRDLRI+DNPALA+AARDG+V PV+ WCP +EGQFYPGR SRWWLKQSL +
Sbjct: 3 GSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L QSL+SLG LVL + ESTL ALL CI ++ AT++V+NHLYDPVSLVRD IK++L L
Sbjct: 63 LSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG--T 179
GIS+QS+NGDLLYEPWEIYD+ G AFTTF+ YW+KC+++ ++ + L PW+LV G +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLES 182
Query: 180 IDGCSIEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ CS++DLGLE + E+SSNALL R WSPGW NA+K+L EFV LL Y K+ K+ G
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLHFGE+SVRKV+Q + M+QI W E E +ES+ FF+R++GLREYSRYLCF
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LL NLK++PW D FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI+
Sbjct: 303 NFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVII 362
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LL+PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PE+QG K
Sbjct: 363 SSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQK 422
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DP+G YVR W+PELARMPTEWIHHPWDAP +L+ AGVELG NYPKPI+DL + RE L
Sbjct: 423 YDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLD 482
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+I MW+++ A+ + +G EVV DN I+T IP+VVLRE S C DQ+VP
Sbjct: 483 DSISTMWQLDTAEKLAELDG--EVVEDNLSNIKTFDIPKVVLRETSPCAL--PIDQRVPH 538
Query: 539 FQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNI 598
+ +NL S K K D + S K EA + S A S +++++
Sbjct: 539 ASSKDHNLKS-KVLKASNRSSICVDMIRSSKMEATS--------SVANSPVSRKRSFCET 589
Query: 599 SFSVPHSFSLSE 610
+F VP S +E
Sbjct: 590 AFHVPSYSSSAE 601
>gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group]
Length = 651
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/612 (61%), Positives = 457/612 (74%), Gaps = 16/612 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFRRDLRI+DNPALAAAARDG V PV+ WCP +EGQFYPGR SRWWLKQSL +
Sbjct: 3 GSERTVVWFRRDLRIDDNPALAAAARDGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L QSL+SLG LVL + ESTL ALL CI ++ AT++V+NHLYDPVSLVRD IK++L L
Sbjct: 63 LSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG--T 179
GIS+QS+NGDLLYEPWEIYD+ G AFTTF+ YW+KC+++ ++ + L PW+LV A G +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLES 182
Query: 180 IDGCSIEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ CS++DLGLE + E+SSNALL R WSPGW NA+K+L EFV LL Y K+ K+ G
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLHFGE+SVRKV+Q + M+QI W E E +ES+ FF+R++GLREYSRYLCF
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFT E+ LL NLK++PW D FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI+
Sbjct: 303 NFPFTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVII 362
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LL+PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PE+QG K
Sbjct: 363 SSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQK 422
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DP+G YVR W+PELARMPTEWIHHPWDAP +L+ AGVELG NYPKPI+DL + RE L
Sbjct: 423 YDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLD 482
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+I MW+++ A+ + +G EVV DN I+T IP+VVLRE S C DQ+VP
Sbjct: 483 DSISTMWQLDTAEKLAELDG--EVVEDNLSNIKTFDIPKVVLRETSPCAL--PIDQRVPH 538
Query: 539 FQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNI 598
+ +NL S K K D + S K EA + S A S +++++
Sbjct: 539 ASSKDHNLKS-KVLKASNRSSICVDMIRSSKMEATS--------SVANSPVSRKRSFCET 589
Query: 599 SFSVPHSFSLSE 610
+F VP S +E
Sbjct: 590 AFHVPSYSSSAE 601
>gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group]
Length = 665
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/626 (59%), Positives = 458/626 (73%), Gaps = 30/626 (4%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFRRDLRI+DNPALA+AARDG+V PV+ WCP +EGQFYPGR SRWWLKQSL +
Sbjct: 3 GSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L QSL+SLG LVL + ESTL ALL CI ++ AT++V+NHLYDPVSLVRD IK++L L
Sbjct: 63 LSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG--T 179
GIS+QS+NGDLLYEPWEIYD+ G AFTTF+ YW+KC+++ ++ + L PW+LV G +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPGLES 182
Query: 180 IDGCSIEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ CS++DLGLE + E+SSNALL R WSPGW NA+K+L EFV LL Y K+ K+ G
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLHFGE+SVRKV+Q + M+QI W E E +ES+ FF+R++GLREYSRYLCF
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLCF 302
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LL NLK++PW D FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI+
Sbjct: 303 NFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVII 362
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI---- 414
SSFAVK LL+PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PEI
Sbjct: 363 SSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIMENV 422
Query: 415 ----------QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
QG K+DP+G YVR W+PELARMPTEWIHHPWDAP +L+ AGVELG NYP
Sbjct: 423 IATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYP 482
Query: 465 KPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKS 524
KPI+DL + RE L +I MW+++ A+ + +G EVV DN I+T IP+VVLRE S
Sbjct: 483 KPIVDLHIARECLDDSISTMWQLDTAEKLAELDG--EVVEDNLSNIKTFDIPKVVLRETS 540
Query: 525 TCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCST 584
C DQ+VP + +NL S K K D + S K EA + S
Sbjct: 541 PCAL--PIDQRVPHASSKDHNLKS-KVLKASNRSSICVDMIRSSKMEATS--------SV 589
Query: 585 AESSAAKRQTTTNISFSVPHSFSLSE 610
A S +++++ +F VP S +E
Sbjct: 590 ANSPVSRKRSFCETAFHVPSYSSSAE 615
>gi|357150246|ref|XP_003575393.1| PREDICTED: cryptochrome-2-like [Brachypodium distachyon]
Length = 637
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/600 (61%), Positives = 456/600 (76%), Gaps = 11/600 (1%)
Query: 1 MGGN-RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
MGG+ RTIVWFRRDLRI+DNPALAAAARDGSV P++ WCP +EGQFYPGR SRWWLK+SL
Sbjct: 1 MGGSERTIVWFRRDLRIDDNPALAAAARDGSVLPIFIWCPADEGQFYPGRCSRWWLKESL 60
Query: 60 SYLGQSLKSLGAELVLFKTE-STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
++LG+SL++LG L L + E S+LAALL+C+ +I AT+VV+NHLYDPVSLVRD ++K +L
Sbjct: 61 AHLGKSLEALGCPLHLIRAEESSLAALLQCVHSIGATRVVYNHLYDPVSLVRDDNVKNEL 120
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
LGIS +S+NGDLLY+PWE+YD+ GHAFTTF+ YW++CL++ +E + L PWRLV G
Sbjct: 121 SVLGISFESFNGDLLYQPWEVYDDNGHAFTTFNLYWEQCLKLPIEVSPSLAPWRLVPVPG 180
Query: 179 --TIDGCSIEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
+ CSI+DLGLE + E+SSNALL R WSPGW NA+K L EFV Q L Y K+ K+
Sbjct: 181 IENLQSCSIDDLGLESSKDEESSNALLSRAWSPGWRNAEKTLEEFVCQGLQDYSKHGMKV 240
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
G +TSLLSPYLH+GELSVRK++Q + M+QI W E E ES+ FL+++GLREYSRY
Sbjct: 241 AGATTSLLSPYLHYGELSVRKIYQLVRMQQIKWENEGKSEAGESINLFLQSVGLREYSRY 300
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
LCFNFPFTHER LL NLK++PW D FK+WRQG TGYPLVDAGMRELWATGW HNRIR
Sbjct: 301 LCFNFPFTHERSLLGNLKHYPWQVDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
VIVSSFAVK LL+PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PE+Q
Sbjct: 361 VIVSSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G K+DP+GEYVR W+PELARMPTEWIHHPWDAP ++L+ AGVELG NYPKPI++L RE
Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHHPWDAPSSILQVAGVELGFNYPKPIVELHTARE 480
Query: 476 RLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQK 535
L AI MW+++ A+ + +G EVV DN I++ IP+VVL+E S P+ DQ+
Sbjct: 481 CLDDAISTMWQLDTAEKLAELDG--EVVEDNLSHIKSFDIPKVVLKELS--PSAPPIDQR 536
Query: 536 VPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTT 595
VPS +G+N+ K K E+ + L S K + S CS + ++ Q T
Sbjct: 537 VPS-SSGRNHELQPKASK-TEDTGSIVNSLISRKRYSSGSAFDVPSCSCSVEVRSQNQDT 594
>gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa]
Length = 484
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/488 (73%), Positives = 415/488 (85%), Gaps = 4/488 (0%)
Query: 46 YPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDP 105
YPGRVSRWWLKQSLS+L QSLKSLGA LV+ KT+STL ALLEC++A++A KVVFNHLYDP
Sbjct: 1 YPGRVSRWWLKQSLSHLDQSLKSLGAGLVMIKTDSTLKALLECVNAVQAEKVVFNHLYDP 60
Query: 106 VSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA 165
VSLVRDH+IKEKLVELGISVQSYNGDLL+EPW IYDE GHAFTTFD +W++CLQMQM+
Sbjct: 61 VSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDPFWNRCLQMQMKTY 120
Query: 166 SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
S +PP +L+ A G ++ SIE LGLE+E E SSNALL R WSPGWS +DK LTEFVE +L
Sbjct: 121 SPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSKSDKALTEFVENNL 180
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
+ Y K+R LG +STSLLSPY+HFGELSVRKVFQ KQILW E N G+ES TFFL+
Sbjct: 181 IHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEGNIVGEESATFFLK 240
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
A+G REYSRYLCF+FPFT ERPLL NLK+FPW+ D FKAWR GRTGYPLVDAGMRELW
Sbjct: 241 AIGFREYSRYLCFSFPFTVERPLLGNLKFFPWNTDPSMFKAWRLGRTGYPLVDAGMRELW 300
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
ATGWIHN++RVIVSSFAVK+LL+PW+WGMKYFWDTLLDADLE DILGWQYISGSLPDGHE
Sbjct: 301 ATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHE 360
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
LERLD PEIQG+K+D EGEYVRQWLPELAR+PTEWIHHPW+APP VL+A+GVELG NYPK
Sbjct: 361 LERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPK 420
Query: 466 PIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKST 525
PIID+DL RE+LTQAIFKMWE EAA + S +EVV D+S+ + +IP+V L++K+
Sbjct: 421 PIIDIDLAREQLTQAIFKMWEDEAASKSSTSENKHEVV-DDSENL---SIPKVFLKDKAP 476
Query: 526 CPTISSND 533
SS++
Sbjct: 477 RGATSSSN 484
>gi|730324|sp|P40115.1|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light
photoreceptor
gi|414196|emb|CAA50898.1| photolyase [Sinapis alba]
Length = 501
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/492 (70%), Positives = 410/492 (83%), Gaps = 2/492 (0%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLR 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG+EL L KT ST++A+L+C+ A ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL--VQAAGTID 181
SVQSYNGDL P +R + KCL M +E + PPWRL + AA T+
Sbjct: 125 SVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLMPLSAAETVW 184
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
CS+E+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTS
Sbjct: 185 ACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTS 244
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGE+SVR+VFQC MKQI+WA+++N EG+ES FLR +GLR+YSR +CFNFP
Sbjct: 245 LLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRIICFNFP 304
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSF
Sbjct: 305 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 364
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
AVK LLLPW+WGMKYFWDTLLDADLECDI+GWQYISGSLPDGHEL+RLD+P IQG+K+DP
Sbjct: 365 AVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDP 424
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+ +D RE LT+AI
Sbjct: 425 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVIDTARELLTKAI 484
Query: 482 FKMWEMEAADNA 493
+ E + A
Sbjct: 485 SRTREAQIMIGA 496
>gi|413953893|gb|AFW86542.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 654
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/612 (59%), Positives = 455/612 (74%), Gaps = 20/612 (3%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G +T+VWFRRDLRI+DNPALAAAA+ GSV P++ WCP + GQ+YPGR SRWWLKQSL +
Sbjct: 3 GPEKTVVWFRRDLRIQDNPALAAAAKGGSVLPIFIWCPSDYGQYYPGRCSRWWLKQSLVH 62
Query: 62 LGQSLKSLGAELVLFKTE-STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
LG+SL+ LG LVL + E STLAALLEC+ +I AT+VV+N LYDP+SLV D+ IK +L
Sbjct: 63 LGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKNELPA 122
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG-- 178
GIS+QS+NGDLLYEPW++YDE G AFTTF+ YW+KC+ + +E + L P RLV A G
Sbjct: 123 HGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYLAPTRLVAAPGLA 182
Query: 179 TIDGCSIEDLGLEDESE-KSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ CSI+DLGLE + +SSNALL R WSPGW NA+ +L EFV LL Y ++ K+GG
Sbjct: 183 NVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVSYGLLEYSEHGMKVGG 242
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
++TSLLSPYLHFGELSVR ++Q + M+Q+ W E E +ESV FLR++G REYSRYLC
Sbjct: 243 STTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKSEAEESVRLFLRSIGFREYSRYLC 302
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FN+PFTHER L NLK++PW D G FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI
Sbjct: 303 FNYPFTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 362
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
VSSFAVK L +PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PE+QG
Sbjct: 363 VSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 422
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
K+DP+GEYVR W+PELARMPTEWIH PW AP ++L+ AGVELG NYPKPI++L + RE L
Sbjct: 423 KYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQVAGVELGFNYPKPIVELHMARECL 482
Query: 478 TQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVP 537
AI MW+++ A + +G EVV DN + I+ IP+VVL +K + P+ SS + +V
Sbjct: 483 DDAISTMWQLDTAAKLAELDG--EVVDDNLNNIRNFDIPKVVLNKKLS-PSTSSMEHRVL 539
Query: 538 SFQNGKNNLPSRKRPKNVEEERQYPDELYS--CKNEAGNSGAHDDFCSTAESSAAKRQTT 595
S NGK+ + +P V+ LY +++ N DD CSTA +++++
Sbjct: 540 S-TNGKDE---KSQPTEVK-------ALYKQIIRDDMMNDSNMDDTCSTANLKVTRKRSS 588
Query: 596 TNISFSVPHSFS 607
++ +F+VP S
Sbjct: 589 SDSAFNVPSCSS 600
>gi|413953894|gb|AFW86543.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 632
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/612 (59%), Positives = 455/612 (74%), Gaps = 20/612 (3%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G +T+VWFRRDLRI+DNPALAAAA+ GSV P++ WCP + GQ+YPGR SRWWLKQSL +
Sbjct: 3 GPEKTVVWFRRDLRIQDNPALAAAAKGGSVLPIFIWCPSDYGQYYPGRCSRWWLKQSLVH 62
Query: 62 LGQSLKSLGAELVLFKTE-STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
LG+SL+ LG LVL + E STLAALLEC+ +I AT+VV+N LYDP+SLV D+ IK +L
Sbjct: 63 LGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKNELPA 122
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG-- 178
GIS+QS+NGDLLYEPW++YDE G AFTTF+ YW+KC+ + +E + L P RLV A G
Sbjct: 123 HGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYLAPTRLVAAPGLA 182
Query: 179 TIDGCSIEDLGLEDESE-KSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ CSI+DLGLE + +SSNALL R WSPGW NA+ +L EFV LL Y ++ K+GG
Sbjct: 183 NVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVSYGLLEYSEHGMKVGG 242
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
++TSLLSPYLHFGELSVR ++Q + M+Q+ W E E +ESV FLR++G REYSRYLC
Sbjct: 243 STTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKSEAEESVRLFLRSIGFREYSRYLC 302
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FN+PFTHER L NLK++PW D G FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI
Sbjct: 303 FNYPFTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 362
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
VSSFAVK L +PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PE+QG
Sbjct: 363 VSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 422
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
K+DP+GEYVR W+PELARMPTEWIH PW AP ++L+ AGVELG NYPKPI++L + RE L
Sbjct: 423 KYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQVAGVELGFNYPKPIVELHMARECL 482
Query: 478 TQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVP 537
AI MW+++ A + +G EVV DN + I+ IP+VVL +K + P+ SS + +V
Sbjct: 483 DDAISTMWQLDTAAKLAELDG--EVVDDNLNNIRNFDIPKVVLNKKLS-PSTSSMEHRVL 539
Query: 538 SFQNGKNNLPSRKRPKNVEEERQYPDELYS--CKNEAGNSGAHDDFCSTAESSAAKRQTT 595
S NGK+ + +P V+ LY +++ N DD CSTA +++++
Sbjct: 540 S-TNGKDE---KSQPTEVK-------ALYKQIIRDDMMNDSNMDDTCSTANLKVTRKRSS 588
Query: 596 TNISFSVPHSFS 607
++ +F+VP S
Sbjct: 589 SDSAFNVPSCSS 600
>gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 656
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/615 (59%), Positives = 461/615 (74%), Gaps = 16/615 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFR+DLRI+DNPALAAAARDG+V PV+ WCP EEG+FYPGR SRWWLK+SL++
Sbjct: 3 GSERTVVWFRKDLRIDDNPALAAAARDGAVLPVFIWCPAEEGRFYPGRCSRWWLKESLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L +SL++LG LVL + ++TL ALL+C+ +I+AT+VV+NHLYDP+SLVRD IK +L+ L
Sbjct: 63 LAKSLEALGCPLVLIRAQTTLDALLQCVHSIRATRVVYNHLYDPISLVRDDKIKNELLGL 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GIS+QS+NGDLLYEPWEIYDE G AFTTF+ YW+KC+++ +E + L PWRLV +G +
Sbjct: 123 GISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEISPSLAPWRLVPVSGIEN 182
Query: 182 GC--SIEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
C SI++LGLE + E+SSNALL R WSPGW NA+K L +FV LL Y K+ K+ G
Sbjct: 183 LCTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKVAGT 242
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLH+GE+SVRK++Q + M+QI E N E ESV FLR++GLREYSRYLCF
Sbjct: 243 TTSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRYLCF 302
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHER LL NLK++PW AD FK+WRQG TGYPLVDAGMRELWATGW HNRIRVIV
Sbjct: 303 NFPFTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIV 362
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LL+PW WGMKYFWD LLDAD+E DILGWQYISG LPDGHEL RLD+PE+QG K
Sbjct: 363 SSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQK 422
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DP+GEYVR W+PELARMP EWIHHPWDAP ++L+ AGVELG NYP PI++L + RE L
Sbjct: 423 YDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLD 482
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
AI MW+++ A+ + +G EVV DN I++ +P+VVL+E S P+ DQKVP+
Sbjct: 483 DAISTMWQLDTAEKLAELDG--EVVEDNLSHIKSFDLPKVVLKELS--PSAPHCDQKVPT 538
Query: 539 FQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNI 598
+G+N K + ++ D + + K E D S S +++++++
Sbjct: 539 -DDGRNLELQPKELTGLNKQTICVDVIKASKME--------DTGSIVNSPISRKRSSSGS 589
Query: 599 SFSVPHSFSLSEGKA 613
F VP S E ++
Sbjct: 590 VFDVPSCSSSVEVRS 604
>gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum]
Length = 650
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/607 (59%), Positives = 456/607 (75%), Gaps = 20/607 (3%)
Query: 1 MGGN-RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
MGG+ RT+VWFRRDLRI+DNPALAAAARDG+V PV+ WCP EEG+FY GR SRWWLK+SL
Sbjct: 1 MGGSERTVVWFRRDLRIDDNPALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
++L +SL++LG LVL + ++TLAALL+C+ +I AT+VV+NHLYDP+SLVRD IK +L+
Sbjct: 61 AHLARSLQALGCPLVLIRAQTTLAALLQCVDSIGATRVVYNHLYDPISLVRDDKIKNELL 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
LGIS+QS+NGDLLYEPWE+YDE G AFTTF YW+KC+++ ++ + L PWRLV +G
Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGI 180
Query: 180 IDGCS--IEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+ CS I++LGLE + E+SSNALL R WSPGW NA+K L +FV LL Y K+R K+
Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
G +TSLLSPYLH+GE+SVRK++Q + ++QI W E ESV FL ++GLREYSRYL
Sbjct: 241 GTTTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRYL 300
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
CFNFPFTHER LL NLK++PW AD FK+WRQG TGYPLVDAGMRELWATGW HNRIRV
Sbjct: 301 CFNFPFTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IVSSFAVK L +PW WGMKYFWD LLDAD+E DILGWQYISGSLPDGHEL RLD+PE+QG
Sbjct: 361 IVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQG 420
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
K+DP+GEYVR W+PELARMP EWIHHPWDAP ++L+ AGVELG NYP PI++L RE
Sbjct: 421 QKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTAREC 480
Query: 477 LTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKV 536
L AI MW+++ A+ + +G EVV DN I++ +P+VVL+E S D+KV
Sbjct: 481 LDDAISTMWQLDTAEKLAELDG--EVVEDNLSHIKSFDVPKVVLKELS-----PHCDRKV 533
Query: 537 PSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTT 596
P+ +G+N K K ++ D + + K E D S A S +++++++
Sbjct: 534 PT-DDGRNLELQPKELKGTNKQTICVDVIKASKME--------DTGSIANSPISRKRSSS 584
Query: 597 NISFSVP 603
F+VP
Sbjct: 585 GSVFNVP 591
>gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
Length = 654
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/606 (59%), Positives = 448/606 (73%), Gaps = 16/606 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G +T+VWFRRDLRI DNPALAAAA++GSV P++ WCP + Q+YPGR SRWWLKQSL++
Sbjct: 3 GSGKTVVWFRRDLRIHDNPALAAAAKEGSVLPLFIWCPADYEQYYPGRCSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTE-STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
LG+SL+ LG LVL + E STLA LLEC+ I AT+VV+N LYDP+SLV D IK +L
Sbjct: 63 LGKSLELLGCPLVLIRAEDSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKNELSA 122
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG-- 178
GISVQS+NGDLLYEPW++YDE G AFT+F+ YW+KC+ + +E + L P RLV A G
Sbjct: 123 HGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPGLA 182
Query: 179 TIDGCSIEDLGLEDESE-KSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ CSI+DLGLE + +SSNALL R WSPGW NA+ +L EF+ LL Y K+ K+GG
Sbjct: 183 NVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKVGG 242
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
+TSLLSPYLHFGELSVRKV+Q + M + W E E +ESV FLR++G REYSRYLC
Sbjct: 243 TTTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRYLC 302
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FNFPFTHER L NLK++PW D FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI
Sbjct: 303 FNFPFTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVI 362
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
VSSFAVK L +PW WGMKYFWD LLDADLE DILGWQYISGSLPDGHEL RLD+PE+QG
Sbjct: 363 VSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQ 422
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
K+DP+GEYVR W+PELARMPTEWIH PW AP ++L+ AGVELG NYPKPI++L + RE L
Sbjct: 423 KYDPDGEYVRTWIPELARMPTEWIHCPWSAPNSILQVAGVELGFNYPKPIVELHMARECL 482
Query: 478 TQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVP 537
AI MW+++ A +G EVV DN + I++ IP+VVL++K + P+ SS +++V
Sbjct: 483 DDAISTMWQLDTAAKLAALDG--EVVDDNLNNIRSFDIPKVVLKKKLS-PSTSSMNKRVL 539
Query: 538 SFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTN 597
S NGKN + +P V+ + +++ N+ DD STA ++++ ++
Sbjct: 540 S-TNGKNE---KSQPTEVKAPYK-----QIIRDDMINASNMDDTGSTANLQVTRKRSRSD 590
Query: 598 ISFSVP 603
+F+VP
Sbjct: 591 SAFNVP 596
>gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum]
Length = 650
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/607 (58%), Positives = 451/607 (74%), Gaps = 20/607 (3%)
Query: 1 MGGN-RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
MGG+ RT+VWFRRDLRI+DNPALAAAARDG+V PV+ WCP EEG+FY GR SRWWLK+SL
Sbjct: 1 MGGSERTVVWFRRDLRIDDNPALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
++L +SL++LG LVL + ++TLAALL+C+ +I AT+VV+ HLYDP+SLVRD IK +L+
Sbjct: 61 AHLARSLQALGCPLVLIRAQTTLAALLQCVDSIGATRVVYIHLYDPISLVRDDKIKNELL 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
LGIS+QS+NGDLLYEPWE+YDE G FTTF YW+KC+++ ++ + L PWRLV +G
Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGI 180
Query: 180 IDGCS--IEDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+ CS I++LGLE + E+SSNALL R WSPGW NA+K L +FV LL Y K+R K+
Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
G +TSL SPYLH+GE+SVRK++Q + ++QI W E ES FL ++GLREYSRYL
Sbjct: 241 GTTTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRYL 300
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
CFNFPFT ER LL NLK++PW AD FK+WRQG TGYPLVDAGMRELWATGW HNRIRV
Sbjct: 301 CFNFPFTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IVSSFAVK L +PW WGMKYFWD LLDAD+E DILGWQYISGSLPDGHEL RLD+PE+QG
Sbjct: 361 IVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQG 420
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
K+DP+GEYVR W+PELARMP EWIHHPWDAP ++L+ AGVELG NYP PI++L RE
Sbjct: 421 QKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTAREC 480
Query: 477 LTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKV 536
L AI MW+++ A+ + +G EVV DN I++ +P+VVL+E S D+KV
Sbjct: 481 LDDAISTMWQLDTAEKLAELDG--EVVEDNLSHIKSFDVPKVVLKELS-----PHCDRKV 533
Query: 537 PSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTT 596
P+ +G+N K K ++ D + + K E D S A S +++++++
Sbjct: 534 PT-DDGRNLELQPKELKGTNKQTICVDVIKASKME--------DTGSIANSPISRKRSSS 584
Query: 597 NISFSVP 603
F+VP
Sbjct: 585 GSVFNVP 591
>gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea subsp. diptera]
gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea subsp. diptera]
Length = 696
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/555 (62%), Positives = 424/555 (76%), Gaps = 16/555 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
RTIVWFRRDLR+EDNPAL AAAR G V PV+ W P+E+GQF+PGRVSRWWLKQSL +L
Sbjct: 4 RTIVWFRRDLRVEDNPALVAAARAGIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDS 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SLKSLG+ L++ K+ TL LL+ + + AT+V +NHLYDPVSLVRDH +K+ L I
Sbjct: 64 SLKSLGSPLIMRKSPDTLTVLLDIVQQVGATQVFYNHLYDPVSLVRDHRVKQGLSIHNIP 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQ-AAGTIDG 182
V ++NGDLLYEPWE+YD+ G AFTTFD +WDKC+ M EP A +L P RLV G I
Sbjct: 124 VHTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLLSPRRLVGLPPGRISV 183
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
I+DLGLE+E E+SSNALLGR W+PGWS+A+K L F++ L Y +R K +TS
Sbjct: 184 GRIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDYATHRIKADNANTSQ 243
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+SVRK+F KQILWA+E ++ G++SV FLRA+G REYSRYL FNFPF
Sbjct: 244 LSPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMFLRAIGFREYSRYLSFNFPF 303
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
THER LL+NLK FPW D +FK+WRQGRTGYPLVDAGMRELWATGW+HNRIRV+VSSF
Sbjct: 304 THERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWATGWLHNRIRVVVSSFC 363
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK L LPWRWGMKYFWDTLLDADLECD+LGWQYISGSLPDGHEL+R+++P+I+G KFDPE
Sbjct: 364 VKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELDRMENPQIEGYKFDPE 423
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR+WLPEL+R+PTEWIHHPWDAP NVL+AAGVELG NYP PI+D+ R++L Q++
Sbjct: 424 GEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPIVDISSARDQLQQSLA 483
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPA---------IPQVVLR-EKSTCPTISS- 531
+MWE EAA A +NG+ E + + ++TP + +VV+R ++ C T SS
Sbjct: 484 EMWEREAASKAALANGSEEGL---GETVETPGSCGPGVKMDVHRVVIRSSRAACSTASSR 540
Query: 532 NDQKVPSFQNGKNNL 546
DQ VP + L
Sbjct: 541 RDQLVPCMPTEDHKL 555
>gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris]
gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris]
Length = 699
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/636 (56%), Positives = 445/636 (69%), Gaps = 33/636 (5%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M TIVW RRDLR+EDNPAL AA R G+V PV+ W P+EE QF+PGRVSRWWLKQSL
Sbjct: 1 MAKPCTIVWLRRDLRLEDNPALCAAGRIGNVVPVFIWSPEEERQFHPGRVSRWWLKQSLI 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+S G LV+ K+ TL L E I A AT+V +NHLYDP+SLVRDH +K+ L +
Sbjct: 61 QLDVSLRSFGVPLVMRKSTDTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQGLTQ 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGT 179
GI VQS+NGDLLYEPWE+ ++ G FT+F++YW KCL M EP S +LPP RL AG+
Sbjct: 121 SGIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTSIAGS 180
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
I + E+LGLEDE+EKSSNALL R W+PGWSNAD+ L F+ LL Y +NR K+ G +
Sbjct: 181 IPTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKIDGPT 240
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLSP++HFGE+SVRKV+ + Q+LWAK+ + G+ES+ FF+R++G REYSRYL FN
Sbjct: 241 TSLLSPHMHFGEVSVRKVYHSVRRLQLLWAKDGSKLGEESIYFFMRSIGFREYSRYLSFN 300
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FPFTHER LLSNLK FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+HNR+RVIVS
Sbjct: 301 FPFTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRVRVIVS 360
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK L LPWRWGMKYFWDTLLDADLE D+LGWQYISGSLPDGHEL+R+D+P+ +G K
Sbjct: 361 SFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDNPQTEGYKH 420
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP GEYVR+WLPEL R+PTEWIHHPWDAPP VL+AAGVELG NYP+PI+++ RERL Q
Sbjct: 421 DPVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVEVAAARERLRQ 480
Query: 480 AIFKMWEMEAADNAMDSNGTNEVVFDNSD-RIQTPAIPQVVLREKSTCPTISSN---DQK 535
A+ +MWE EAA A E + +N + ++ TP + + + T+S + DQ+
Sbjct: 481 AVAQMWEQEAALKAAGVATDAEALDENLEVKVVTPPLVSTHSLKTAVAGTLSRSSLRDQR 540
Query: 536 VP------SFQNG----KNNLPSRKRPKNVEE--ERQYPDELYS----CKNEAGNSG--- 576
VP S +NG +N P + P E +S C N++ N
Sbjct: 541 VPTCGKQLSMENGVPHEGDNSPDIAMSPQQDNLLATTAPPEAHSTAEKCDNKSMNCDQTP 600
Query: 577 ---------AHDDFCSTAESSAAKRQTTTNISFSVP 603
A D STAESS++ +Q + VP
Sbjct: 601 EPKHNVPPPAVSDGNSTAESSSSPKQVNDELRNGVP 636
>gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens]
gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
Length = 727
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/548 (61%), Positives = 413/548 (75%), Gaps = 14/548 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFRRDLR+EDNPAL AAAR G+V PV+ W P E+GQF+PGRVSRWWLKQSL++L S
Sbjct: 5 TIVWFRRDLRLEDNPALIAAARAGTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLELS 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
LK LG+ L+L K+ TL+ LLE A AT+V +NHLYDPVSLVRDH +K+ L + GI V
Sbjct: 65 LKKLGSPLILRKSPDTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQRGIVV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCS 184
++NGDLLYEPWE+YDE G AFT ++A+W KC+ M EP A +LPP RL G I GC+
Sbjct: 125 HTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLPPRRLTGPIGKIVGCN 184
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS---TS 241
E+LGLEDE EKSSNALL R W PGW A+K L F+ L+ Y ++RQK G S TS
Sbjct: 185 AEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGASGTPTS 244
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSP+LHFGELSVRK+F + +QI WA+E N G+ SV FLRA+G REYSRYL F+FP
Sbjct: 245 LLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRYLSFHFP 304
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FTHER LL+NLK FPW AD G FKAWRQGRTGYPLVDAGMRELWATGW HNRIRV+V+SF
Sbjct: 305 FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRIRVVVASF 364
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+VK L LPWRWGMKYFWD LLDADLECD+LGWQYISGSLPDGHEL+R+++PE++G +FDP
Sbjct: 365 SVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEVEGYRFDP 424
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+G+YVR+W+PELAR+P EW+HHPWDAPP+ L+AAGVELG NYP+PI+++ RERL ++
Sbjct: 425 DGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARERLQASL 484
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDN----------SDRIQTPAIPQVVLREKSTCPTISS 531
+MWE +AA A +NG E + + +R+ P + + R+ S
Sbjct: 485 AEMWERDAAMKAALANGLEEGLGETVEVAGTGGPEHERMDVPRVMVHMQRDADMSCNSSR 544
Query: 532 NDQKVPSF 539
DQ VP
Sbjct: 545 RDQLVPEI 552
>gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens]
Length = 727
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/548 (61%), Positives = 412/548 (75%), Gaps = 14/548 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFRRDLR+EDNPAL AAAR G+V PV+ W P E+GQF+PGRVSRWWLKQSL++L S
Sbjct: 5 TIVWFRRDLRLEDNPALIAAARAGTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLELS 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
LK LG+ L+L K+ L+ LLE A AT+V +NHLYDPVSLVRDH +K+ L + GI V
Sbjct: 65 LKKLGSPLILRKSPDMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQRGIVV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCS 184
++NGDLLYEPWE+YDE G AFT ++A+W KC+ M EP A +LPP RL G I GC+
Sbjct: 125 HTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLPPRRLTGPIGKIVGCN 184
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS---TS 241
E+LGLEDE EKSSNALL R W PGW A+K L F+ L+ Y ++RQK G S TS
Sbjct: 185 AEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGASGTPTS 244
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSP+LHFGELSVRK+F + +QI WA+E N G+ SV FLRA+G REYSRYL F+FP
Sbjct: 245 LLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRYLSFHFP 304
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FTHER LL+NLK FPW AD G FKAWRQGRTGYPLVDAGMRELWATGW HNRIRV+V+SF
Sbjct: 305 FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRIRVVVASF 364
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+VK L LPWRWGMKYFWD LLDADLECD+LGWQYISGSLPDGHEL+R+++PE++G +FDP
Sbjct: 365 SVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEVEGYRFDP 424
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+G+YVR+W+PELAR+P EW+HHPWDAPP+ L+AAGVELG NYP+PI+++ RERL ++
Sbjct: 425 DGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARERLQASL 484
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDN----------SDRIQTPAIPQVVLREKSTCPTISS 531
+MWE +AA A +NG E + + +R+ P + + R+ S
Sbjct: 485 AEMWERDAAMKAALANGLEEGLGETVEVAGTGGPEHERMDVPRVMVHMQRDADMSCNSSR 544
Query: 532 NDQKVPSF 539
DQ VP
Sbjct: 545 RDQLVPEI 552
>gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 679
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/608 (58%), Positives = 427/608 (70%), Gaps = 22/608 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFRRDLRIEDNPAL AA R G V PV+ W P+EEGQF PGRVSRWWLKQSL +L +S
Sbjct: 10 TIVWFRRDLRIEDNPALVAAVRAGPVLPVFIWSPEEEGQFLPGRVSRWWLKQSLVHLNES 69
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LGA LV+ + + LAALLE A AT+V +NHLYDPVSLVRDH +K+ L + GI V
Sbjct: 70 LTILGAPLVMRRASNVLAALLEIKKATGATQVFYNHLYDPVSLVRDHRVKQGLSQAGIIV 129
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCS 184
S+N DLLYEPWE+ D+ G AFTTF +W KC+ M EP A ILPP R+++ G CS
Sbjct: 130 NSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPPKRILKFPGPSLSCS 189
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
IEDL LEDE EK SNALL R W PGW+NAD+ L F+ L+ Y NRQK+ +TSLLS
Sbjct: 190 IEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAANRQKVDSATTSLLS 249
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LH+GE+SVRK+F + MKQ+LW KE E +ESV FLR++G REYSRYL FNFPFTH
Sbjct: 250 PHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFREYSRYLSFNFPFTH 309
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ER LL NLK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+HN+IRVIVSSF VK
Sbjct: 310 ERSLLYNLKFFPWRVDESYFKAWRQGRTGYPLVDAGMRELWATGWLHNQIRVIVSSFCVK 369
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L LPWRWGMKYFWDTLLDADLE D+LGWQYISGSLPDGHEL+R+D+P+I+G KFDP GE
Sbjct: 370 FLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRIDNPQIEGYKFDPYGE 429
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PTEWIHHPWDAPP+VL+AAG+ELG NYP+PI+++ RERL QA+ +M
Sbjct: 430 YVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYPRPIVEIAAARERLEQALAEM 489
Query: 485 WEMEAADNAMDSNGTNEVVFD-------------NSDRIQTPAIPQVVLR--EKSTCPTI 529
W EAAD A +NG E + D N D + P +++R P +
Sbjct: 490 WANEAADKATLANGLEEGLGDTVEVQGMRNGFPANMDIDRGPGEKALLVRSPHDQMVPNV 549
Query: 530 SSNDQKVPSFQNGKNNLPS------RKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCS 583
+ Q G N S R+ P N + +DD S
Sbjct: 550 GVRRSTTGAVQGGAANQGSALQAVLREVPANGHVQAVQAQSQRMAAPPMAMQNGYDDTHS 609
Query: 584 TAESSAAK 591
TAES++A+
Sbjct: 610 TAESTSAR 617
>gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 637
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/542 (62%), Positives = 412/542 (76%), Gaps = 14/542 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFRRDLR+EDNPAL AA R G+V P++ W P+EEGQF PGRVSRWWLKQSL L QS
Sbjct: 4 TIVWFRRDLRVEDNPALVAAVRAGTVVPLFIWTPEEEGQFLPGRVSRWWLKQSLIQLHQS 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L SLG+ L++ + +S ++ L + I AT+V FNHLYDPVSLVRDH +K++L++ G++V
Sbjct: 64 LTSLGSPLIMRRAQSAISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQELLQAGVTV 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCS 184
++N DLLYEPWEI DE+G FTTF +W C+ M +EP A +LPP R+ + G
Sbjct: 124 TTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKWPGIAATSP 183
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
IEDL LE+ESEK SN LL R W+PGW+NAD+ L FV L+ Y NRQK+ +TSLLS
Sbjct: 184 IEDLELENESEKGSNDLLARAWAPGWANADRALEAFVSGPLMEYASNRQKVDSATTSLLS 243
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LH+GELSVRKVF + MKQ+LW KE N + +ESV FLR++GLREYSRYLCFNFPFTH
Sbjct: 244 PHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREYSRYLCFNFPFTH 303
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ER LLSNLK+FPW D G FK WRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSF VK
Sbjct: 304 ERSLLSNLKFFPWRNDEGYFKVWRQGRTGYPLVDAGMRELWATGWLHNRIRVIVSSFFVK 363
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L LPWRWGMKYFWDTLLDADLE D+LGWQYISGSLPDGHEL R+D+P+++G ++DP GE
Sbjct: 364 FLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELYRIDNPQLEGYRYDPCGE 423
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+P+EWIHHPWDAPPNVL+AAG+ELG NYP+PI+++ RERL QA+ +M
Sbjct: 424 YVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRPIVEVAAARERLEQALAEM 483
Query: 485 WEMEAA------DNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSNDQKVP 537
E EAA + ++ G DN D + P+ P L ++ S +DQ VP
Sbjct: 484 MEKEAAATRAAFEGSLQGVGLEPSQADNMDIDRGPSDAPGRNLSDR------SPHDQMVP 537
Query: 538 SF 539
S
Sbjct: 538 SM 539
>gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 718
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/556 (62%), Positives = 417/556 (75%), Gaps = 17/556 (3%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + T+VWFRRDLR+EDNPALAAAAR G+V PV+ W P EEGQF PGRVSRWWLKQSL
Sbjct: 1 MAKSCTVVWFRRDLRLEDNPALAAAARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSLI 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+SLG LV+ T++ALLE + A++VV+NHLYDPVSLVRDH +K+ LV+
Sbjct: 61 QLDISLRSLGVSLVMINANDTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQSLVQ 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQA-AG 178
GI VQS+NGDLLYEPWE+ D+ G FT F++YW KCL M EP S +LPP RL A AG
Sbjct: 121 NGIQVQSFNGDLLYEPWEVLDDHGKPFTYFESYWAKCLTMPFEPESPLLPPRRLTAAPAG 180
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ + ++LGLEDE++KSSNALL R W+PGWSNADK L F+ L Y +NR ++ G
Sbjct: 181 IVHSLTPDELGLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSRNRHEIDGP 240
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSP+LHFGE+SVRKVF + Q+LWAK+ + G+ES+ +F+R++G REYSRYLCF
Sbjct: 241 TTSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFREYSRYLCF 300
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHER LLSNLK FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+HNR+RVIV
Sbjct: 301 NFPFTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGWLHNRVRVIV 360
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSF VK L LPWRWGMKYFWDTLLDADLE DILGWQYISGSLPDGHEL+R+D+P+ +G K
Sbjct: 361 SSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMDNPQTEGYK 420
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
DP GEYVR+WLPEL R+PTEWIHHPWDAPP VL+AAGVELG NYP+P++++ RERL
Sbjct: 421 HDPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVEVAAARERLR 480
Query: 479 QAIFKMWEMEAADNAMDSNGTNEV-VFDNSDRI--------QTPAIPQVVLREKS----- 524
A+ MWE EAA A G E V D+ ++ Q IP+ + + +
Sbjct: 481 DAVTHMWEQEAALKAAGDKGIEEASVGDSIAKVNCQPEVAAQPCKIPKASVSQATNGDME 540
Query: 525 -TCPTISSNDQKVPSF 539
+ S DQ VP+F
Sbjct: 541 VSSAGSSRRDQMVPTF 556
>gi|343403557|dbj|BAK61601.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/413 (79%), Positives = 365/413 (88%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST+ AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+Y E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ C +E+LGLE+ESEK SNALLGR WSPGW NADK LTEFVEQHLL Y K R K+GG+ST
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQ MKQILW E N +G+ESV FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSDGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PE
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPE 413
>gi|343403555|dbj|BAK61600.1| cryptochrome2c [Glycine soja]
gi|343403559|dbj|BAK61602.1| cryptochrome2c [Glycine soja]
gi|343403563|dbj|BAK61604.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/413 (79%), Positives = 364/413 (88%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST+ AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+Y E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ C +E+LGLE+ESEK SNALLGR WSPGW NADK LTEFVEQHLL Y K R K+GG+ST
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQ MKQILW E N G+ESV FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LL +LK+FPW+ D FK WRQGRTG+PLVDAGMRELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PE
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPE 413
>gi|343403561|dbj|BAK61603.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/413 (79%), Positives = 364/413 (88%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAA++GSV PVY WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLG+ LVL KT ST+ AL+EC+ AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GISVQSYNGDLLYEPWE+Y E G AFTTF+A+W KCL MQM+ S++PPW+L+ A G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ C +E+LGLE+ESEK SNALLGR WSPGW NADK LTEFVEQHLL Y K R K+GG+ST
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQ MKQILW E N G+ESV FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LL +LK+FPW+ D FK WRQGRTG+PLVDAG+RELWATGWIHNRIRVIVSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGVRELWATGWIHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
FAVK+LLLPW+WGMKYFWDTLLDADLE DILGWQYISG LPDGHELERLD+PE
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPE 413
>gi|340007733|gb|AEK26572.1| cryptochrome 1.2 [Populus tremula]
Length = 681
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/547 (60%), Positives = 411/547 (75%), Gaps = 12/547 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG LV ++ +++ LLE I + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTSLVTKRSTDSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D +G FTTF +WD+CL M +P A +LPP R++ +G
Sbjct: 123 GIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRII--SGDA 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C E L EDESEK SNALL R WSPGWSNAD+ LT F+ L+ Y KNR+K +T
Sbjct: 181 SRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+V+S
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVAS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPDG E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------N 532
+ +MW+ EAA A NGT E + D+S+ A PQ + E++ P ++
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPI-AFPQDINMEENHEPVRNNPPATNRRYE 539
Query: 533 DQKVPSF 539
DQ VPS
Sbjct: 540 DQMVPSM 546
>gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis]
Length = 655
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/548 (60%), Positives = 416/548 (75%), Gaps = 8/548 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M N +IVWFRRDLR+EDNPALAA R G+V +Y W P+EEGQ+YPGRVSRWWLKQSL+
Sbjct: 1 MSTNCSIVWFRRDLRVEDNPALAAGVRAGAVIVLYIWSPEEEGQYYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L SL++LGA L+ ++ ++++A+L+ + A AT++ +NHLYDP+SLVRDH +K+ L
Sbjct: 61 HLDSSLRNLGARLITKRSTNSISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQDLSS 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGT 179
GI V+S+N DLLYEPWE+ DE GHAF+TF YW+KCL M +P A +LPP R+V AG
Sbjct: 121 RGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRIV--AGE 178
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ C +DL LEDESEK+SNALL R WSPGWS+ADK LT F+ LL Y NRQK +
Sbjct: 179 VSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKADSAT 238
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLSP+LHFGELSV+KVF L ++Q+LWA E N G++SV FL+++GLREYSRYL FN
Sbjct: 239 TSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFN 298
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP +HE+PLLS+L YFPW D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VS
Sbjct: 299 FPSSHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 358
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VKVL LPWRWGMKYFWDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KF
Sbjct: 359 SFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKF 418
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP GEYVR+WLPELAR+PTEWIHHPWDAP VL+AAGVELG NYP PI+++ +ERL +
Sbjct: 419 DPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQE 478
Query: 480 AIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQV-----VLREKSTCPTISSNDQ 534
+ +MW+ EA A NGT E + ++ + Q+ +R + S +DQ
Sbjct: 479 GLSEMWQREADARASLENGTEEGLGESLENANASLPDQMDVDREPVRNNTDLAARSQDDQ 538
Query: 535 KVPSFQNG 542
VPS N
Sbjct: 539 LVPSISNA 546
>gi|340007731|gb|AEK26571.1| cryptochrome 1.1 [Populus tremula]
Length = 681
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/549 (59%), Positives = 412/549 (75%), Gaps = 12/549 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL+Y
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAY 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG LV ++ +++ LLE + + AT+++FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTSLVTKRSTDSVSTLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEILTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D +G FTTFD +W++CL M +P A +LPP R++ +G +
Sbjct: 123 GITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRII--SGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C L EDESEK SNALL R WSPGWSNAD+ LT F+ L+ Y NR+K +T
Sbjct: 181 SRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV F++++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFIKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P+THERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWA GW+H+RIRV+V+S
Sbjct: 301 PYTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVAS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDCREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------N 532
+ +MW+ EAA A NGT E + D+S+ A P+ +L E++ P ++
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPI-AFPEDILMEENHEPVRNNPPATNRRYE 539
Query: 533 DQKVPSFQN 541
DQ VPS +
Sbjct: 540 DQMVPSMTS 548
>gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa]
gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/547 (60%), Positives = 410/547 (74%), Gaps = 12/547 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG LV ++ +++ LLE I + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTSLVTKRSTDSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D +G FTTF +WD+CL M +P A +LPP R++ +G
Sbjct: 123 GIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRII--SGDA 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C E L EDE EK SNALL R WSPGWSNAD+ LT F+ L+ Y KNR+K +T
Sbjct: 181 SRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+V+S
Sbjct: 301 PYSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVAS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPDG E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------N 532
+ +MW+ EAA A NGT E + D+S+ A PQ + E++ P ++
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPI-AFPQDINMEENHEPVRNNPPATNRRYE 539
Query: 533 DQKVPSF 539
DQ VPS
Sbjct: 540 DQMVPSM 546
>gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/625 (57%), Positives = 448/625 (71%), Gaps = 44/625 (7%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L Q
Sbjct: 6 KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SLK+LG+EL L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVELGIS
Sbjct: 66 SLKALGSELTLIKTHNTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTVKEKLVELGIS 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTID 181
VQS+NGDLLYEPWEIY E+G FT F +YW KCL M +E + PPWRL+ AA +
Sbjct: 126 VQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLMPISTAAEAVW 185
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLH+GE+SVR++FQC MKQI+WA+++N EG ES FL+ +GLREY
Sbjct: 246 LLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLREY-----LGIY 300
Query: 302 FTHERPLLSNL-----KYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW--IHNRI 354
+ R L SNL + AD+ F+ + R + L G R A G+ +HNR+
Sbjct: 301 VSISRLLTSNLCGVIFVFSLGMADVDKFQGL-ETRQDW-LSVGGCRNERALGYGCMHNRL 358
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
RVIVSSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL+RLD+P I
Sbjct: 359 RVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAI 418
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG+K+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D R
Sbjct: 419 QGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPILDIDTAR 478
Query: 475 ERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQ 534
E LT+AI + E + M +E+V D+ + ++ + +E P++SSNDQ
Sbjct: 479 ELLTKAISRTREAQ----IMIGAAPDEIVADSFEALEGNTV-----KEPGLYPSVSSNDQ 529
Query: 535 KVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAES---SAAK 591
+VPS + KR K+VEEE + + S D+ +A
Sbjct: 530 QVPSAVRYNGS----KRVKHVEEEER----------DMKKSRGFDEVMREERDLFSTAES 575
Query: 592 RQTTTNISFSVPHSFSL-SEGKALQ 615
++T + F V HS SL SEGK+L+
Sbjct: 576 SSSSTTVRFLVSHSCSLVSEGKSLE 600
>gi|343403553|dbj|BAK61599.1| cryptochrome2b [Glycine soja]
Length = 507
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/468 (71%), Positives = 378/468 (80%), Gaps = 5/468 (1%)
Query: 106 VSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA 165
VSLVRDH+IKEKLVELGISV+SYNGDLL+EPW IYDE GHAFTTFD +W++CL MQM+
Sbjct: 1 VSLVRDHNIKEKLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKAF 60
Query: 166 SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
S++PP +L+ A G + CSIE LGLEDESEKSSNALLGR W PGW+ DK LTEFVEQHL
Sbjct: 61 SLIPP-QLILAEGKVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHL 119
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
L Y KNR K+GG+STSLLSPY+HFGELSVRKVFQ KQILWA E N G+ES T FLR
Sbjct: 120 LHYSKNRLKVGGDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLR 179
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
A+GLREYSRYLCFNFP T E+PLL NL +FPW D NFKAWRQGRTGYPLVDAGMRELW
Sbjct: 180 AIGLREYSRYLCFNFPSTIEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELW 239
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
ATGWIHN+IRVIVSSFAVK+LL+PWRWGMKYFWDTLLDADLE DILGWQYISG LPDGH+
Sbjct: 240 ATGWIHNKIRVIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHK 299
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
LERLD P I G+KFDPEGEYVRQWLPELARMP EWIHHPW+AP VL+A+GVELG NYPK
Sbjct: 300 LERLDDPAIHGAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPK 359
Query: 466 PIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKST 525
PIID+D RE+LT+AIFKMWE EAA S NEVV D ++ AIP+V L++K +
Sbjct: 360 PIIDIDQAREQLTEAIFKMWENEAASKGSGSEERNEVV----DESESLAIPKVFLKDKVS 415
Query: 526 CPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAG 573
T SSNDQKVP+ N + + P+RKRPK E Q + + + G
Sbjct: 416 HITSSSNDQKVPTLDNPQIDPPNRKRPKCSAEVEQKQNNSRNLSKDTG 463
>gi|343403551|dbj|BAK61598.1| cryptochrome2b [Glycine soja]
Length = 507
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/468 (71%), Positives = 378/468 (80%), Gaps = 5/468 (1%)
Query: 106 VSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA 165
VSLVRDH+IKEKLVELGISV+SYNGDLL+EPW IYDE GHAFTTFD +W++CL MQ++
Sbjct: 1 VSLVRDHNIKEKLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQIKAF 60
Query: 166 SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
S++PP +L+ A G + CSIE LGLEDESEKSSNALLGR W PGW+ DK LTEFVEQHL
Sbjct: 61 SLIPP-QLILAEGKVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHL 119
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
L Y KNR K+GG+STSLLSPY+HFGELSVRKVFQ KQILWA E N G+ES T FLR
Sbjct: 120 LHYSKNRLKVGGDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLR 179
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
A+GLREYSRYLCFNFP T E+PLL NL +FPW D NFKAWRQGRTGYPLVDAGMRELW
Sbjct: 180 AIGLREYSRYLCFNFPSTIEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELW 239
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
ATGWIHN+IRVIVSSFAVK+LL+PWRWGMKYFWDTLLDADLE DILGWQYISG LPDGH+
Sbjct: 240 ATGWIHNKIRVIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHK 299
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
LERLD P I G+KFDPEGEYVRQWLPELARMP EWIHHPW+AP VL+A+GVELG NYPK
Sbjct: 300 LERLDDPAIHGAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPK 359
Query: 466 PIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKST 525
PIID+D RE+LT+AIFKMWE EAA S NEVV D ++ AIP+V L++K +
Sbjct: 360 PIIDIDQAREQLTEAIFKMWENEAASKGSGSEERNEVV----DESESLAIPKVFLKDKVS 415
Query: 526 CPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAG 573
T SSNDQKVP+ N + + P+RKRPK E Q + + + G
Sbjct: 416 HITSSSNDQKVPTLDNPQIDPPNRKRPKCSAEVEQKQNNSRNLSKDTG 463
>gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa]
gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/547 (59%), Positives = 410/547 (74%), Gaps = 12/547 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG LV ++ ++++LLE + + AT+++FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEILTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D +G FTTFD +W++CL M +P A +LPP R++ +G +
Sbjct: 123 GITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRII--SGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C L EDESEK SNALL R WSPGWSNAD+ LT F+ L+ Y NR+K +T
Sbjct: 181 SRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV F++++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P THERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWA GW+H+RIRV+V+S
Sbjct: 301 PCTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVAS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------N 532
+ +MW+ EAA A NGT E + D+S+ A P+ + E++ P ++
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPF-AFPEDIHMEENHEPVRNNPPATNRRYE 539
Query: 533 DQKVPSF 539
DQ VPS
Sbjct: 540 DQMVPSM 546
>gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera]
Length = 681
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/546 (60%), Positives = 407/546 (74%), Gaps = 10/546 (1%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V PV+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ ++ +++LLE + + AT + FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTPLITKRSTDCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V S+N DLLYEPW++ D +GH+FTTF A+WD+CL M +P A +LPP R+ G +
Sbjct: 123 GIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI--NPGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + + EDESEK SNALL R W+PGWSNADK LT F+ L+ Y KN +K +T
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR-------IQTPAIPQVVLREKSTCPTISSND 533
+ +MW+ AA A NGT E + D+ +Q IP+ V +T D
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGDSESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYED 540
Query: 534 QKVPSF 539
Q VPS
Sbjct: 541 QMVPSM 546
>gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia]
Length = 681
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/546 (60%), Positives = 407/546 (74%), Gaps = 10/546 (1%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V PV+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ ++ +++LLE + + AT + FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V S+N DLLYEPW++ D +GH+FTTF A+WD+CL M +P A +LPP R+ G +
Sbjct: 123 GIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI--NPGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + + EDESEK SNALL R W+PGWSNADK LT F+ L+ Y KN +K +T
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR-------IQTPAIPQVVLREKSTCPTISSND 533
+ +MW+ AA A NGT E + D+ +Q IP+ V +T D
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGDSESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYED 540
Query: 534 QKVPSF 539
Q VPS
Sbjct: 541 QMVPSM 546
>gi|225459298|ref|XP_002285792.1| PREDICTED: cryptochrome-1 [Vitis vinifera]
Length = 681
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/546 (60%), Positives = 407/546 (74%), Gaps = 10/546 (1%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V PV+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ ++ +++LLE + + AT + FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V S+N DLLYEPW++ D +GH+FTTF A+WD+CL M +P A +LPP R+ G +
Sbjct: 123 GIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI--NPGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + + EDESEK SNALL R W+PGWSNADK LT F+ L+ Y KN +K +T
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR-------IQTPAIPQVVLREKSTCPTISSND 533
+ +MW+ AA A NGT E + D+ +Q IP+ V +T D
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGDSESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYED 540
Query: 534 QKVPSF 539
Q VPS
Sbjct: 541 QMVPSM 546
>gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera]
Length = 691
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/546 (60%), Positives = 407/546 (74%), Gaps = 10/546 (1%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V PV+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ ++ +++LLE + + AT + FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V S+N DLLYEPW++ D +GH+FTTF A+WD+CL M +P A +LPP R+ G +
Sbjct: 123 GIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRI--NPGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + + EDESEK SNALL R W+PGWSNADK LT F+ L+ Y KN +K +T
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRYL FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR-------IQTPAIPQVVLREKSTCPTISSND 533
+ +MW+ AA A NGT E + D+ +Q IP+ V +T D
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGDSESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYED 540
Query: 534 QKVPSF 539
Q VPS
Sbjct: 541 QMVPSM 546
>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris]
Length = 681
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/549 (61%), Positives = 408/549 (74%), Gaps = 15/549 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GSGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGHYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SLKSLG LV ++ ++++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLKSLGTSLVTKRSTDSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRAKEVLTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GISV+S+N DLLYEPWE+ DE G FTTF A+W+KCL M +P A +LPP R++ G
Sbjct: 123 GISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRII--PGDA 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CS + L EDESEK SNALL R WSPGWSNADK LT FV LL Y +NR+K +T
Sbjct: 181 SRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +L+YFPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ G K D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFVGYKCD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D + RL QA
Sbjct: 421 PHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVRLEQA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSN-------- 532
+ +MW+ EAA A NG E D++D A PQ + E P ++N
Sbjct: 481 LSQMWQHEAASRAAVENGMEEGHGDSAD--SPIAFPQAMHMEMDHEPVRNNNPVIVTVRR 538
Query: 533 --DQKVPSF 539
DQ VPS
Sbjct: 539 YEDQMVPSM 547
>gi|351722683|ref|NP_001235205.1| cryptochrome 1 [Glycine max]
gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max]
gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max]
Length = 681
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/547 (60%), Positives = 413/547 (75%), Gaps = 12/547 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLRIEDNPAL A R G+V V+ W P+EEGQ+YPGRVSRWWLK SL++
Sbjct: 3 GGGGSIVWFRRDLRIEDNPALTAGVRAGAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL++LG L+ ++ TL++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LHSSLRNLGTPLITKRSTDTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPWE+ D G FTTF A+W++CL M +P S +LPP R++ G
Sbjct: 123 GITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRII--PGDA 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDE EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +T
Sbjct: 181 SRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSP+LHFGELSV+KVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 241 SLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG E++R+D+P+ +G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------N 532
+ +MW+ EAA A NGT E + D+S+ + A PQ + E++ P ++
Sbjct: 481 LSEMWQQEAASRAAMENGTEEGLGDSSESVPA-AFPQDMQMEETHEPVRNNPLPVARRYQ 539
Query: 533 DQKVPSF 539
DQ VPS
Sbjct: 540 DQMVPSI 546
>gi|357489649|ref|XP_003615112.1| Cryptochrome [Medicago truncatula]
gi|357489651|ref|XP_003615113.1| Cryptochrome [Medicago truncatula]
gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula]
gi|355516447|gb|AES98070.1| Cryptochrome [Medicago truncatula]
gi|355516448|gb|AES98071.1| Cryptochrome [Medicago truncatula]
Length = 679
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/586 (57%), Positives = 430/586 (73%), Gaps = 28/586 (4%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEGQ+YPGRVSRWWLK SL++
Sbjct: 5 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAH 64
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL++LG LV ++ ++++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 65 LDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQ 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ DE G FTTFD++W++CL M +P A +LPP R++ G +
Sbjct: 125 GITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRII--PGDV 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L ED+ EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +T
Sbjct: 183 SKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SV+KVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 243 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 303 PYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G K D
Sbjct: 363 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D RL +A
Sbjct: 423 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTP-AIPQVVLREKSTCP--------TISS 531
+ +MW++EAA A NGT E + D+++ TP A PQ + E+ P T
Sbjct: 483 LIQMWQLEAASRAAAENGTEEGLGDSAE--STPIAFPQDIQMEERHEPIRNNAPHGTRRY 540
Query: 532 NDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
DQ VPS + SR R VEEE E S +N AG+S A
Sbjct: 541 QDQMVPSMTS------SRVR---VEEE-----ETSSVRNSAGDSRA 572
>gi|359806517|ref|NP_001241002.1| cryptochrome-1-like [Glycine max]
gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max]
gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max]
Length = 682
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/547 (59%), Positives = 411/547 (75%), Gaps = 12/547 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLRIEDNPAL A R G+V V+ W P+EEGQ+YPGRVSRWWLK SL++
Sbjct: 4 GGCSSIVWFRRDLRIEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAH 63
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL++LG L+ ++ TL++L E + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 64 LDSSLRNLGTPLITKRSTDTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 123
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D G FTTF A+W++CL M +P S +LPP R++ G
Sbjct: 124 GITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRII--PGDA 181
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDE EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +T
Sbjct: 182 SRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 241
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSP+LHFGELSV+KVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 242 SLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 302 PYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG E++R+D+P+ +G KFD
Sbjct: 362 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 422 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLEA 481
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------N 532
+ KMW+ EAA A NGT E + D+S+ + A PQ E++ P ++
Sbjct: 482 LSKMWQQEAASRAAMENGTEEGLGDSSESVPA-AFPQDTRMEETHEPVRNNPLPIARRYQ 540
Query: 533 DQKVPSF 539
DQ VPS
Sbjct: 541 DQMVPSI 547
>gi|350539503|ref|NP_001234667.1| cryptochrome 1 [Solanum lycopersicum]
gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum]
gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum]
Length = 679
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/548 (60%), Positives = 410/548 (74%), Gaps = 14/548 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ + P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SLKSLG L+ ++ ++++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTKEILTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GISV+S+N DLLYEPWE+ D+ G FTTF A+W+KCL M +P A +LPP R++ +G
Sbjct: 123 GISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRII--SGDA 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C ++L EDESEK SNALL R WSPGWSNADK LT FV LL Y +NR+K +T
Sbjct: 181 SRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +L+YFPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG EL+R+D+P+ G K D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFVGYKCD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D + RL QA
Sbjct: 421 PHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVRLEQA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------- 531
+ +MW+ +AA A NG E D++D A PQ + E P ++
Sbjct: 481 LSQMWQNDAAARAAIENGMEEGHGDSAD--SPIAFPQAMHMEMDHEPVRNNPVIVTVRRY 538
Query: 532 NDQKVPSF 539
DQ VPS
Sbjct: 539 EDQMVPSM 546
>gi|363807588|ref|NP_001242152.1| cryptochrome-1-like [Glycine max]
gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max]
gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max]
Length = 681
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/597 (56%), Positives = 427/597 (71%), Gaps = 25/597 (4%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEGQ+YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVISVFIWAPEEEGQYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL++LG+ L+ ++ +++++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRNLGSPLITKRSTNSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D G FTTF A+W++CL M +P A +LPP R++ G +
Sbjct: 123 GITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRII--PGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDE EK+SNALL R WSPGWSNADK LT FV L+ Y KNR+K +T
Sbjct: 181 PRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SV+KVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 241 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL++LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG EL+R+D+P+ +G K D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFEGYKCD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAEVRLQEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCP--------TISSN 532
+ +MW+ EAA A NGT E + D+++ A PQ + E+ P T
Sbjct: 481 LIQMWQQEAASRAAMENGTEEGLGDSAESAPI-AFPQDIQMEERPEPVRNNLPHGTRRYQ 539
Query: 533 DQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSA 589
DQ VPS + VEEE D +N A +S A T + A
Sbjct: 540 DQMVPSITSSH---------VRVEEEETSSD----LRNSAADSRAEVPINVTTQQIA 583
>gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum]
gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum]
gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum]
Length = 682
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/584 (57%), Positives = 423/584 (72%), Gaps = 26/584 (4%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
G +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEGQ+YPGRVSRWWLK SLS L
Sbjct: 4 GGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLSQL 63
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL++LG LV ++ ++++LLE + + AT++ FNHLYDP+SLVRDH KE L G
Sbjct: 64 DSSLRNLGTPLVTKRSTDSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQG 123
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTID 181
I+V+SYN DLLYEPW++ DE G FTTFD++W++CL M +P A +LPP R++ G +
Sbjct: 124 ITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRII--PGDVS 181
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
C + L EDE EKSSNALL R WSPGWSNA+K LT F+ L+ Y NR+K +TS
Sbjct: 182 RCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKADSATTS 241
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+LHFGE+SV+KVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P
Sbjct: 242 FLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 301
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 302 YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G K DP
Sbjct: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDP 421
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D RL +A+
Sbjct: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEAL 481
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCP--------TISSND 533
+MW++EAA NGT E + D+++ A PQ + E+ P T D
Sbjct: 482 IQMWQLEAASRTAAENGTEEGLGDSTESAPI-AFPQDIQMEERHEPVRNNPPHGTRRYQD 540
Query: 534 QKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
Q VPS SR R VE+E E S +N AG+S A
Sbjct: 541 QMVPSMTY------SRVR---VEDE-----ETSSVRNSAGDSRA 570
>gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa]
Length = 676
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/586 (57%), Positives = 427/586 (72%), Gaps = 28/586 (4%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEGQ+YPGRVSRWWLK SL++
Sbjct: 5 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAH 64
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL++LG LV ++ ++++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 65 LDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQ 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ DE G FTTFD++W++CL M +P A LPP R++ G +
Sbjct: 125 GITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPPLPPKRII--PGDV 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L ED+ EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +T
Sbjct: 183 SKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SV+KV + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 243 SFLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERP L +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 303 PYSHERPPLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G K D
Sbjct: 363 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D RL +A
Sbjct: 423 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTP-AIPQVVLREKSTCP--------TISS 531
+ +MW++EAA A NGT E + D+++ TP A PQ + E+ P T
Sbjct: 483 LIQMWQLEAASRAAAENGTEEGLGDSAE--STPIAFPQDIQMEERHEPIRNNAPHGTRRY 540
Query: 532 NDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
DQ VPS + SR R VEEE E S +N AG+S A
Sbjct: 541 QDQMVPSMTS------SRVR---VEEE-----ETSSVRNSAGDSRA 572
>gi|359807220|ref|NP_001240855.1| cryptochrome-1-like [Glycine max]
gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max]
gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max]
Length = 681
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/597 (56%), Positives = 423/597 (70%), Gaps = 25/597 (4%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEGQ+YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVCVFIWAPEEEGQYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L L++LG+ L+ ++ +++++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSYLRNLGSPLITKRSTNSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKAKEVLTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D G FTTF A+W++CL M +P A +LPP R++ G +
Sbjct: 123 GITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRII--PGDV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDESEK+SNALL R WSPGWSNADK L FV L+ Y KNR+K +T
Sbjct: 181 SRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SV+KVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 241 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ G K D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFVGYKCD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D RL +A
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAEVRLQEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCP--------TISSN 532
+ +MW EAA A NGT E + D+S+ A PQ + E+ P T
Sbjct: 481 LIQMWRQEAASRAAMENGTEEGLGDSSESAPI-AFPQDIQMEERPEPVRNNPPHGTRRYQ 539
Query: 533 DQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSA 589
DQ VPS + VEEE D +N A +S A T + +A
Sbjct: 540 DQMVPSITSSH---------VRVEEEETSSD----LRNSAADSRAEVPINVTTQQNA 583
>gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum]
Length = 682
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/584 (57%), Positives = 422/584 (72%), Gaps = 26/584 (4%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
G +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEGQ+YPGRVSRWWLK SLS L
Sbjct: 4 GGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLSQL 63
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL++LG LV ++ ++++LLE + + AT++ FNHLYDP+SLVRDH KE L G
Sbjct: 64 DSSLRNLGTPLVTKRSTDSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQG 123
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTID 181
I+V+SYN DLLYEPW++ DE G FTTFD++W++CL M +P A +LPP R++ G +
Sbjct: 124 ITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRII--PGDVS 181
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
C + L EDE EKSSNALL R WSPGWSNA+K LT F+ L+ Y NR+K +TS
Sbjct: 182 RCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKADSATTS 241
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+LHF E+SV+KVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P
Sbjct: 242 FLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 301
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 302 YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G K DP
Sbjct: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDP 421
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+++D RL +A+
Sbjct: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEAL 481
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCP--------TISSND 533
+MW++EAA NGT E + D+++ A PQ + E+ P T D
Sbjct: 482 IQMWQLEAASRTAAENGTEEGLGDSTESAPI-AFPQDIQMEERHEPVRNNPPHGTRRYQD 540
Query: 534 QKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
Q VPS SR R VE+E E S +N AG+S A
Sbjct: 541 QMVPSMTY------SRVR---VEDE-----ETSSVRNSAGDSRA 570
>gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus]
gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus]
Length = 680
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/582 (56%), Positives = 422/582 (72%), Gaps = 20/582 (3%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAAA R G V V+ W P+EEG + PGRVSRWWLK SL+
Sbjct: 8 GGGCSIVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQ 67
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ ++ ++A+LLE + + A+++ FNHLYDP+SLVRDH K+ L
Sbjct: 68 LDSSLRSLGTCLITKRSTDSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G +
Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDV 185
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDESEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +T
Sbjct: 186 SKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 245
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF L +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 246 SFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 305
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 306 PYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 365
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFD
Sbjct: 366 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 425
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL +A
Sbjct: 426 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEA 485
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQK 535
+ +MW++EAA A NG+ E + D+++ ++ P P+ + E++ P DQ
Sbjct: 486 LSQMWQLEAASRAAIENGSEEGLGDSTEFVEAPIEFPRDITMEETEPTRLNPVRRYEDQM 545
Query: 536 VPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
VPS S RP+ +E S +N G+S A
Sbjct: 546 VPSITT------SLIRPEEDQESS------LSLRNSGGDSRA 575
>gi|219888079|gb|ACL54414.1| unknown [Zea mays]
gi|414586950|tpg|DAA37521.1| TPA: hypothetical protein ZEAMMB73_248176 [Zea mays]
gi|414586951|tpg|DAA37522.1| TPA: hypothetical protein ZEAMMB73_248176 [Zea mays]
Length = 688
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/593 (56%), Positives = 419/593 (70%), Gaps = 18/593 (3%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
R +VWFRRDLR+EDNPALAAAAR G V P Y W P+EEG +YPGRVSRWW+ QSL++L
Sbjct: 2 RIVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLNHLD 61
Query: 64 QSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL+ LGA +LV ++ ALL+ + AT V FNHLYDP+SLVRD +KE L G
Sbjct: 62 ASLRRLGAGKLVTRRSADAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKEMLAAEG 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTID 181
I VQS+N DLLYEPWE+ D+ G FT FD +W++CL M +P A +LPP R+ +G +
Sbjct: 122 IVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRI--NSGDLS 179
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
C EDL EDESE+ SNALL R W+PGW NADK LT F+ L Y NR+K STS
Sbjct: 180 MCPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTS 239
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSP+LHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN P
Sbjct: 240 LLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHP 299
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+HERPLL++L++FPW D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+V+SF
Sbjct: 300 SSHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASF 359
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+GSLPDG EL+R+D+P+ +G KFDP
Sbjct: 360 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFEGYKFDP 419
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+W+PELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL A+
Sbjct: 420 HGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGRLQAAL 479
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
+MW++EAA A +NGT E + D+S+ + + V R+ + ++ VP
Sbjct: 480 SEMWQLEAASRATMNNGTEEGLGDSSEVLFPQELQMEVDRQPAPAEAAANVHVHVP---- 535
Query: 542 GKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQT 594
+P+R+R ++ P S N AG + D + +E + Q
Sbjct: 536 ----MPARRR-----GDQMVPTMTTSSLNRAGTEVSADLVVANSEEEDTRAQV 579
>gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor]
Length = 679
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/508 (62%), Positives = 393/508 (77%), Gaps = 3/508 (0%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V P++ W P+EEG +YPGRVSRWWLKQSLS+
Sbjct: 5 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVLPLFIWAPEEEGHYYPGRVSRWWLKQSLSH 64
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG LV ++ ++++LLE I A ++ FNHLYDP+SLVRDH KE L
Sbjct: 65 LDISLRSLGTSLVTRRSTDSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDHRAKEVLTAE 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
G++V+S+N DLLYEPWE++D+ G FTTF +W++CL M +P A +LPP R++ +G +
Sbjct: 125 GVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLPPKRII--SGDL 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C+ + L EDESEK SNALL R WSPGWSNADK LT F LL Y KNR+K +T
Sbjct: 183 SRCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNRRKADSATT 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRK+F +KQ+LWA E N G+ES+ FL+++GLREYSRY+ FN
Sbjct: 243 SFLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLKSIGLREYSRYMSFNH 302
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LKYFPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 303 PYSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 362
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ G K D
Sbjct: 363 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGCELDRIDNPQFDGYKCD 422
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+ P +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 423 PNGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGSNYPLPIVGIDTAKARLQEA 482
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSD 508
+ +MW+ E A A NG E + ++S+
Sbjct: 483 LSQMWQHETASRAAIENGVEEGLGESSE 510
>gi|449437020|ref|XP_004136290.1| PREDICTED: cryptochrome-1-like [Cucumis sativus]
gi|449496973|ref|XP_004160278.1| PREDICTED: cryptochrome-1-like [Cucumis sativus]
Length = 681
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/558 (59%), Positives = 415/558 (74%), Gaps = 6/558 (1%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLRIEDNPAL AA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRIEDNPALTAAVRAGAVVVVFIWAPEEEGHYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ ++ +T++ALL+ A A+ + FNHLYDP+SL+RDH +KE L
Sbjct: 63 LDSSLRSLGTYLLTKRSTNTISALLDVFKATGASHLFFNHLYDPLSLIRDHRVKEVLSAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI V+SYN DLLYEPW++ D G+ FTTF +W++CL M +P A +LPP R++ +G
Sbjct: 123 GIRVRSYNADLLYEPWDVKDANGNPFTTFAGFWERCLSMPCDPEAPLLPPKRII--SGDA 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDESEK SNALL R WSPGWSNADK LT F+ LL Y KNR+K +T
Sbjct: 181 SRCPCDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLLEYSKNRRKADSATT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKVF + MKQ+LWA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRMKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNH 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPD E +R+D+P+++G KFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFD 420
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPEL+R+PTEWIHHPW+AP +VL+AAGVELG NYP PI+ LD + RL +A
Sbjct: 421 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGVELGSNYPLPIVGLDAAKARLEEA 480
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQ 540
+ +MW+ EAA A NGT E + D+S+ I A PQ + ++ N V ++
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESIPI-AFPQDIAMDEEDIEPARMNAHTVRCYE 539
Query: 541 NGKNNLPSRKRPKNVEEE 558
+ +PS +E+E
Sbjct: 540 D--QMVPSMTSSVRLEDE 555
>gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa]
Length = 704
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/604 (54%), Positives = 422/604 (69%), Gaps = 40/604 (6%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAAA R G V V+ W P+EEG + PGRVSRWWLK SL+
Sbjct: 8 GGGCSIVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQ 67
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ ++ ++A+LLE + + A+++ FNHLYDP+SLVRDH K+ L
Sbjct: 68 LDSSLRSLGTCLITKRSTDSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQA---- 176
GI+V+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++
Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGLLLH 187
Query: 177 ------------------AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLT 218
AG + C + L EDESEK SNALL R WSPGWSNADK LT
Sbjct: 188 HTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALT 247
Query: 219 EFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE 278
F+ L+ Y KNR+K +TS LSP+LHFGE+SVRKVF L +KQ+ WA E N G+E
Sbjct: 248 TFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEE 307
Query: 279 SVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVD 338
SV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAWRQGRTGYPLVD
Sbjct: 308 SVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVD 367
Query: 339 AGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISG 398
AGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G
Sbjct: 368 AGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITG 427
Query: 399 SLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE 458
+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+E
Sbjct: 428 TLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIE 487
Query: 459 LGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQ 517
LG NYP+PI+ LD + RL +A+ +MW++EAA A NG+ E + D+++ ++ P P+
Sbjct: 488 LGSNYPRPIVGLDEAKARLHEALSQMWQLEAASRAAIENGSEEGLGDSTEFVEAPIEFPR 547
Query: 518 VVLREKS----TCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAG 573
+ E++ P DQ VPS S RP+ +E S +N G
Sbjct: 548 DITMEETEPTRLNPVRRYEDQMVPSITT------SLIRPEEDQESS------LSLRNSGG 595
Query: 574 NSGA 577
+S A
Sbjct: 596 DSRA 599
>gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 684
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/599 (54%), Positives = 427/599 (71%), Gaps = 22/599 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V V+ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 77
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 78 RSLGTCLITKRSTDSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 137
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 138 SFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVT 195
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LSP
Sbjct: 196 DPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 255
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 256 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 315
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 316 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 375
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 376 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 435
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL +A+ +MW
Sbjct: 436 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMW 495
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 496 QLEAASRAAIENGSEEGLGDSAEVEEAPIDFPRDITMEETEPARLNPIRRYEDQMVPSIT 555
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAH--DDFCSTAESSAAKRQTTTN 597
S RP+ EE + +N G+S A + +T ++ + + +N
Sbjct: 556 T------SLIRPEEDEESS------LNLRNSVGDSRAEVPRNLVNTNQAQQPRAEPASN 602
>gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 674
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/599 (54%), Positives = 427/599 (71%), Gaps = 22/599 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V V+ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 77
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++ +LLE + + A+++ FNHLYDP+SLVRDH K L GI+V+
Sbjct: 78 RSLGTCLITKRSTDSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQGIAVR 137
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 138 SFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVS 195
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LSP
Sbjct: 196 DPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 255
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 256 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 315
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 316 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 375
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 376 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 435
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL +A+ +MW
Sbjct: 436 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMW 495
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 496 QLEAASRAAIENGSEEGLGDSAEVEEAPIDFPRDITMEETEPARLNPIRRYEDQMVPSIT 555
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAH--DDFCSTAESSAAKRQTTTN 597
+ S RP+ EE + +N G+S A + +T ++ + + +N
Sbjct: 556 S------SLLRPEEDEESS------LNLRNSVGDSRAEVPRNLVNTNQAQQPRAEPASN 602
>gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 660
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/599 (54%), Positives = 427/599 (71%), Gaps = 22/599 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V V+ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 77
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++ +LLE + + A+++ FNHLYDP+SLVRDH K L GI+V+
Sbjct: 78 RSLGTCLITKRSTDSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQGIAVR 137
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 138 SFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVT 195
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LSP
Sbjct: 196 DPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 255
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 256 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 315
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 316 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 375
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 376 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 435
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL +A+ +MW
Sbjct: 436 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMW 495
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 496 QLEAASRAAIENGSEEGLGDSAEVEEAPIDFPRDITMEETEPARLNPIRRYEDQMVPSIT 555
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAH--DDFCSTAESSAAKRQTTTN 597
+ S RP+ EE + +N G+S A + +T ++ + + +N
Sbjct: 556 S------SLLRPEEDEESS------LNLRNSVGDSRAEVPRNLVNTNQAQQPRAEPASN 602
>gi|304571302|dbj|BAJ15769.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571304|dbj|BAJ15770.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571308|dbj|BAJ15772.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571310|dbj|BAJ15773.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571312|dbj|BAJ15774.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571322|dbj|BAJ15779.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571324|dbj|BAJ15780.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/558 (56%), Positives = 413/558 (74%), Gaps = 14/558 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L S
Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V
Sbjct: 62 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 122 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCV 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L EDESEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LS
Sbjct: 180 SDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+ HFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++H
Sbjct: 240 PHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSH 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK
Sbjct: 300 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
VL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GE
Sbjct: 360 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP+P++ LD + RL +A+ +M
Sbjct: 420 YVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQM 479
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQKVPSF 539
W++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 480 WQLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEETEPTRLNPIRRYEDQMVPSI 539
Query: 540 QNGKNNLPSRKRPKNVEE 557
+ S RP+ EE
Sbjct: 540 TS------SLIRPEEDEE 551
>gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
lyrata]
gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
lyrata]
Length = 690
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/578 (55%), Positives = 422/578 (73%), Gaps = 20/578 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L S
Sbjct: 14 NIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 73
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V
Sbjct: 74 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 133
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 134 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCV 191
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L ED+SE+ SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LS
Sbjct: 192 SDPLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 251
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++H
Sbjct: 252 PHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSH 311
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK
Sbjct: 312 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 371
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
VL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GE
Sbjct: 372 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 431
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL +A+ +M
Sbjct: 432 YVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQM 491
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSF 539
W++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 492 WQLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSI 551
Query: 540 QNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 552 TS------SLIRPEEDEESS------LNLRNSVGDSRA 577
>gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
Length = 681
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/577 (55%), Positives = 420/577 (72%), Gaps = 20/577 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 493 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSIT 552
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 553 S------SLIRPEEDEESS------LNLRNSVGDSRA 577
>gi|18413170|ref|NP_567341.1| cryptochrome-1 [Arabidopsis thaliana]
gi|332278156|sp|Q43125.2|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light
photoreceptor; AltName: Full=Protein BLUE LIGHT
UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL
4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2
gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana]
gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana]
Length = 681
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/577 (55%), Positives = 420/577 (72%), Gaps = 20/577 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 493 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSIT 552
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 553 S------SLIRPEEDEESS------LNLRNSVGDSRA 577
>gi|304571316|dbj|BAJ15776.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/558 (56%), Positives = 413/558 (74%), Gaps = 14/558 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L S
Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V
Sbjct: 62 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 122 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVPKCV 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L EDESEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LS
Sbjct: 180 SDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+ HFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++H
Sbjct: 240 PHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSH 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK
Sbjct: 300 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
VL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GE
Sbjct: 360 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP+P++ LD + RL +A+ +M
Sbjct: 420 YVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQM 479
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQKVPSF 539
W++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 480 WQLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEETEPTRLNPIRRYEDQMVPSI 539
Query: 540 QNGKNNLPSRKRPKNVEE 557
+ S RP+ EE
Sbjct: 540 TS------SLIRPEEDEE 551
>gi|304571314|dbj|BAJ15775.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/558 (56%), Positives = 412/558 (73%), Gaps = 14/558 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L S
Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V
Sbjct: 62 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 122 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCV 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L EDESEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LS
Sbjct: 180 SDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+ HFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++H
Sbjct: 240 PHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSH 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK
Sbjct: 300 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
VL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GE
Sbjct: 360 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP+P++ LD + RL +A+ +M
Sbjct: 420 YVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQM 479
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREK----STCPTISSNDQKVPSF 539
W++EAA A NG+ E + D+++ + P P+ + E+ P DQ VPS
Sbjct: 480 WQLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEEIEPTRLNPIRRYEDQMVPSI 539
Query: 540 QNGKNNLPSRKRPKNVEE 557
+ S RP+ EE
Sbjct: 540 TS------SLIRPEEDEE 551
>gi|304571306|dbj|BAJ15771.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/558 (56%), Positives = 413/558 (74%), Gaps = 14/558 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L S
Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V
Sbjct: 62 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 122 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCV 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L EDESEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LS
Sbjct: 180 SDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+ HFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++H
Sbjct: 240 PHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSH 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPLL +LK+FPW D FKAWRQGRTGYPLVDAGM+ELWATGW+H+RIRV+VSSF VK
Sbjct: 300 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWLHDRIRVVVSSFFVK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
VL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GE
Sbjct: 360 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP+P++ LD + RL +A+ +M
Sbjct: 420 YVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQM 479
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQKVPSF 539
W++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 480 WQLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEETEPTRLNPIRRYEDQMVPSI 539
Query: 540 QNGKNNLPSRKRPKNVEE 557
+ S RP+ EE
Sbjct: 540 TS------SLIRPEEDEE 551
>gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana]
Length = 681
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/577 (55%), Positives = 420/577 (72%), Gaps = 20/577 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 493 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSIT 552
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 553 S------SLIRPEEDEESS------LNLRNSVGDSRA 577
>gi|738308|prf||1924377A blue light photoreceptor
Length = 681
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/577 (55%), Positives = 420/577 (72%), Gaps = 20/577 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLY+PWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 493 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSIT 552
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 553 S------SLIRPEEDEESS------LNLRNSVGDSRA 577
>gi|304571318|dbj|BAJ15777.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571320|dbj|BAJ15778.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/558 (56%), Positives = 412/558 (73%), Gaps = 14/558 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L S
Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V
Sbjct: 62 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 122 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCV 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L EDESEK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LS
Sbjct: 180 SDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+ HFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++H
Sbjct: 240 PHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSH 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK
Sbjct: 300 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
VL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GE
Sbjct: 360 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PTEWIHHPW+ P +VL+AAG+ELG NYP+P++ LD + RL +A+ +M
Sbjct: 420 YVRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQM 479
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKST----CPTISSNDQKVPSF 539
W++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 480 WQLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEETEPTRLNPIRRYEDQMVPSI 539
Query: 540 QNGKNNLPSRKRPKNVEE 557
+ S RP+ EE
Sbjct: 540 TS------SLIRPEEDEE 551
>gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris]
gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris]
Length = 487
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/484 (63%), Positives = 381/484 (78%), Gaps = 3/484 (0%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M + TIVW RRDLR++DNPAL A++ G +V PV+ W P+EEGQF GR+SRWWLKQSL
Sbjct: 1 MTTSTTIVWLRRDLRLDDNPALKEASKIGNAVVPVFVWVPEEEGQFQQGRMSRWWLKQSL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L QSL SLG+ L++ ++ S+L AL++ + +A++V FNHLYDP+SLVRD +KE L+
Sbjct: 61 KQLAQSLDSLGSPLIIRRSSSSLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGLL 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWR-LVQAA 177
+ GI V+++N DLLYEPW++ D G AFTTF+ +WDKCL M EP A +LPP R L+ A
Sbjct: 121 QTGIHVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCLNMPEEPHAPLLPPTRSLLAFA 180
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G + GC++EDL LE+ SEK SNALL R W+PGW NA+K L FVE+HLL+Y N+ + G
Sbjct: 181 GHLPGCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMVDG 240
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
++TS LSP+LHFGELSVRKVF + +K + W KE +G++SV FLR++GLR+YSRY+C
Sbjct: 241 STTSFLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRYIC 300
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FNFPFTHER +L N + FPW D G FKAWRQGRTGYPLVDAGMR++WATGW+HNRIRVI
Sbjct: 301 FNFPFTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRIRVI 360
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
VSSF VKVL LPW WGMKYFWD LLDADLE DILGWQYISG LPDGHELER+D +I+G
Sbjct: 361 VSSFFVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQIEGY 420
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
K+DP GEYVR+WLPEL+R+PTEWIHHPWDAPP L+AAGVELG NYP+P+++ RL
Sbjct: 421 KYDPRGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAAWSRL 480
Query: 478 TQAI 481
A+
Sbjct: 481 QTAL 484
>gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
(SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
N=1)
Length = 716
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/577 (55%), Positives = 420/577 (72%), Gaps = 20/577 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 493 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSIT 552
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 553 S------SLIRPEEDEESS------LNLRNSVGDSRA 577
>gi|304571326|dbj|BAJ15781.1| cryptochrome1, partial [Cardamine alpina]
Length = 681
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/558 (56%), Positives = 413/558 (74%), Gaps = 14/558 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L S
Sbjct: 2 SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V
Sbjct: 62 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
+S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 122 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCV 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L EDE EK SNALL R WSPGWSNADK LT F+ L+ Y KNR+K +TS LS
Sbjct: 180 SDPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++H
Sbjct: 240 PHLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSH 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK
Sbjct: 300 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
VL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GE
Sbjct: 360 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+WLPEL+R+PTEWIHHPW+AP +VL+AAG+ELG NYP+P++ LD + RL +A+ +M
Sbjct: 420 YVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQM 479
Query: 485 WEMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKS----TCPTISSNDQKVPSF 539
W++EAA A NG+ E + D+++ + P P+ + E++ P DQ VPS
Sbjct: 480 WQLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEETEPTRLNPIRRYEDQMVPSI 539
Query: 540 QNGKNNLPSRKRPKNVEE 557
+ S RP+ EE
Sbjct: 540 TS------SLIRPEEDEE 551
>gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
Length = 694
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/552 (60%), Positives = 406/552 (73%), Gaps = 15/552 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL
Sbjct: 14 AATRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLK 73
Query: 61 YLGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L SL+ LGA LV ++ T+AALLE + + AT + FNHLYDP+SLVRDH +K+ L
Sbjct: 74 HLDASLRRLGASRLVTRRSTDTVAALLELVRSTGATHLFFNHLYDPLSLVRDHRVKQVLA 133
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
GISVQS+N DLLYEPWE+ D+ G FT F ++W+KCL M PA +LPP R+ +G
Sbjct: 134 AEGISVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWNKCLCMVDPPAPMLPPKRI--NSGD 191
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ CS +DL ED+SE+ SNALL R WSPGW NADK T F+ L+ Y NR+K +
Sbjct: 192 LTRCSSDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKADSAN 251
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLSPYLHFGELSVRKVF + MKQ+ W+ E N +G+E + FLR++GLREYSRYL FN
Sbjct: 252 TSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLFLRSIGLREYSRYLAFN 311
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P +HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VS
Sbjct: 312 HPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 371
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KF
Sbjct: 372 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKF 431
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL
Sbjct: 432 DPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQD 491
Query: 480 AIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQ-----VVLREKSTCPTISS--- 531
A+ +MWE+EAA A NG E + D+SD A PQ V R S P +
Sbjct: 492 ALSEMWELEAASRAEIENGMEEGLGDSSDEPPI-AFPQELQHMEVDRATSHTPATAGPAR 550
Query: 532 --NDQKVPSFQN 541
DQ VPS +
Sbjct: 551 RRADQMVPSITS 562
>gi|401782498|dbj|BAM36552.1| cryptochrome1 [Fragaria x ananassa]
Length = 673
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/626 (53%), Positives = 432/626 (69%), Gaps = 43/626 (6%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G ++VWFRRDLR+EDNPAL A R G V ++ W P+EEG FYPGRVSRWWLK SL++
Sbjct: 4 GSGCSVVWFRRDLRVEDNPALLAGVRAGGVVALFIWAPEEEGPFYPGRVSRWWLKHSLAH 63
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ K+ ++++LLE A AT++ FNHLYDP+SLVRDH KE L
Sbjct: 64 LDSSLRSLGTPLITKKSTDSVSSLLEVCLATGATQLFFNHLYDPISLVRDHRAKEVLSAN 123
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D G FTTFDA+W++CL M +P A +LPP R++ +G
Sbjct: 124 GITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPPKRII--SGDA 181
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDESEK SNALL R WSPGWS+ADK +T F+ L+ Y NR+K N+T
Sbjct: 182 SRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNRRKADSNTT 241
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 242 SLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW + FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 302 PYSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG++PDG E +R+D+P+ +G K D
Sbjct: 362 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDNPQFEGYKCD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ ++ + RL +A
Sbjct: 422 PHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIEAAKSRLQEA 481
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVV--------LREKSTCPTISSN 532
+ +MW+ E A NGT E + ++S+ A P+ + +R PT
Sbjct: 482 LTEMWQHE---RAAAENGTEEGLGESSESTSI-AFPEDIQMEDSHEQVRNNPPPPTRRYE 537
Query: 533 DQKVPSF---------QNGKNNLPSRKR-PKNVEEERQYPDELYSCKNEAGNSGAHDDFC 582
DQ VPS + +LPSR P NV +++ + N+ G H++
Sbjct: 538 DQMVPSITTSLVRVEEEESSLDLPSRAEVPTNVTGDQE---PMRDTMNQEGFQPNHNNTP 594
Query: 583 ---------------STAESSAAKRQ 593
STAESS++ R+
Sbjct: 595 PQPNTTLTLQYVVEDSTAESSSSTRR 620
>gi|339777723|gb|AEK05699.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777725|gb|AEK05700.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777757|gb|AEK05716.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/520 (59%), Positives = 388/520 (74%), Gaps = 12/520 (2%)
Query: 29 GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLEC 88
G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++ +++ LLE
Sbjct: 2 GAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLEV 61
Query: 89 ISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFT 148
I + AT++ FNHLYDP+SLVRDH KE L GI+V+S+N DLLYEPW++ D +G FT
Sbjct: 62 IKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFT 121
Query: 149 TFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWS 207
TF +WD+CL M +P A +LPP R++ +G C E L EDE EK SNALL R WS
Sbjct: 122 TFATFWDRCLSMPFDPEAPLLPPKRII--SGDASRCPSEMLVFEDELEKGSNALLARAWS 179
Query: 208 PGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQIL 267
PGWSNAD+ LT F+ L+ Y KNR+K +TS LSP+LHFGE+SVRKVF + +KQ+L
Sbjct: 180 PGWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVL 239
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRYL FN P++HERPLL +LK+FPW D G FKAW
Sbjct: 240 WANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAW 299
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+V+SF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 300 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLE 359
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPDG E +R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIHHPW+A
Sbjct: 360 SDALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 419
Query: 448 PPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNS 507
P +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NGT E + D+S
Sbjct: 420 PESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSS 479
Query: 508 DRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSF 539
+ A PQ + E++ P ++ DQ VPS
Sbjct: 480 ESAPI-AFPQDINMEENHEPVRNNPPATNRRYEDQMVPSM 518
>gi|339777743|gb|AEK05709.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/520 (59%), Positives = 388/520 (74%), Gaps = 12/520 (2%)
Query: 29 GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLEC 88
G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++ +++ LLE
Sbjct: 2 GAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLEV 61
Query: 89 ISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFT 148
I + AT++ FNHLYDP+SLVRDH KE L GI+V+S+N DLLYEPW++ D +G FT
Sbjct: 62 IKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFT 121
Query: 149 TFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWS 207
TF +WD+CL M +P A +LPP R++ +G C E L EDE EK SNALL R WS
Sbjct: 122 TFATFWDRCLSMPFDPEAPLLPPKRII--SGDASRCPSEMLVFEDELEKGSNALLARAWS 179
Query: 208 PGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQIL 267
PGWSNAD+ LT F+ L+ Y KNR+K +TS LSP+LHFGE+SVRKVF + +KQ+L
Sbjct: 180 PGWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVL 239
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRYL FN P++HERPLL +LK+FPW D G FKAW
Sbjct: 240 WANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAW 299
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+V+SF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 300 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLE 359
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPDG E +R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIHHPW+A
Sbjct: 360 SDALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 419
Query: 448 PPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNS 507
P +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NGT E + D+S
Sbjct: 420 PESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSS 479
Query: 508 DRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSF 539
+ A PQ + E++ P ++ DQ VPS
Sbjct: 480 ESAPI-AFPQDINMEENHEPVRNNPPATNRRYEDQMVPSM 518
>gi|339777721|gb|AEK05698.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777727|gb|AEK05701.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777729|gb|AEK05702.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777731|gb|AEK05703.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777733|gb|AEK05704.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777735|gb|AEK05705.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777737|gb|AEK05706.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777739|gb|AEK05707.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777745|gb|AEK05710.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777747|gb|AEK05711.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777749|gb|AEK05712.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777751|gb|AEK05713.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777753|gb|AEK05714.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777755|gb|AEK05715.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777759|gb|AEK05717.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777761|gb|AEK05718.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777763|gb|AEK05719.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777765|gb|AEK05720.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/520 (59%), Positives = 388/520 (74%), Gaps = 12/520 (2%)
Query: 29 GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLEC 88
G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++ +++ LLE
Sbjct: 2 GAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLEV 61
Query: 89 ISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFT 148
I + AT++ FNHLYDP+SLVRDH KE L GI+V+S+N DLLYEPW++ D +G FT
Sbjct: 62 IKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFT 121
Query: 149 TFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWS 207
TF +WD+CL M +P A +LPP R++ +G C E L EDE EK SNALL R WS
Sbjct: 122 TFATFWDRCLSMPFDPEAPLLPPKRII--SGDASRCPSEMLVFEDELEKGSNALLARAWS 179
Query: 208 PGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQIL 267
PGWSNAD+ LT F+ L+ Y KNR+K +TS LSP+LHFGE+SVRKVF + +KQ+L
Sbjct: 180 PGWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVL 239
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRYL FN P++HERPLL +LK+FPW D G FKAW
Sbjct: 240 WANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAW 299
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+V+SF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 300 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLE 359
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPDG E +R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIHHPW+A
Sbjct: 360 SDALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 419
Query: 448 PPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNS 507
P +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NGT E + D+S
Sbjct: 420 PESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSS 479
Query: 508 DRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSF 539
+ A PQ + E++ P ++ DQ VPS
Sbjct: 480 ESAPI-AFPQDINMEENHEPVRNNPPATNRRYEDQMVPSM 518
>gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca]
Length = 673
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/626 (53%), Positives = 432/626 (69%), Gaps = 43/626 (6%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G ++VWFRRDLR+EDNPAL A R G V ++ W P+EEG +YPGRVSRWWLK SL++
Sbjct: 4 GSGCSVVWFRRDLRVEDNPALLAGVRAGGVVALFIWAPEEEGPYYPGRVSRWWLKHSLAH 63
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG L+ K+ ++++LLE A AT++ FNHLYDP+SLVRDH KE L
Sbjct: 64 LDSSLRSLGTPLITKKSTDSVSSLLEVCLATGATQLFFNHLYDPISLVRDHRAKEVLSAN 123
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S+N DLLYEPW++ D G FTTFDA+W++CL M +P A +LPP R++ +G
Sbjct: 124 GITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPPKRII--SGDA 181
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDESEK SNALL R WSPGWS+ADK +T F+ L+ Y NR+K N+T
Sbjct: 182 SRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNRRKADSNTT 241
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN
Sbjct: 242 SLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW + FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 302 PYSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG++PDG E +R+D+P+ +G K D
Sbjct: 362 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDNPQFEGYKCD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ ++ + RL +A
Sbjct: 422 PHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIEAAKSRLQEA 481
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVV--------LREKSTCPTISSN 532
+ +MW+ E A NGT E + ++S+ A P+ + +R PT
Sbjct: 482 LTEMWQHE---RAAAENGTEEGLGESSESTSI-AFPEDIQMEDSHEQVRNNPPPPTRRYE 537
Query: 533 DQKVPSF---------QNGKNNLPSRKR-PKNVEEERQYPDELYSCKNEAGNSGAHDDFC 582
DQ VPS + +LPSR P NV +++ + N+ G H++
Sbjct: 538 DQMVPSITTSLVRVEEEESSLDLPSRAEVPTNVTGDQE---PMRDTMNQEGFQPNHNNTP 594
Query: 583 ---------------STAESSAAKRQ 593
STAESS++ R+
Sbjct: 595 PQPNTTLTLQYVVEDSTAESSSSTRR 620
>gi|339777741|gb|AEK05708.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/520 (59%), Positives = 388/520 (74%), Gaps = 12/520 (2%)
Query: 29 GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLEC 88
G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++ +++ LLE
Sbjct: 2 GAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLEV 61
Query: 89 ISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFT 148
I + AT++ FNHLYDP+SLVRDH KE L GI+V+S+N DLLYEPW++ D +G FT
Sbjct: 62 IKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFT 121
Query: 149 TFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWS 207
TF +WD+CL M +P A +LPP R++ +G C E L EDE EK SNALL R WS
Sbjct: 122 TFATFWDRCLXMPFDPEAPLLPPKRII--SGDASRCPSEMLVFEDELEKGSNALLARAWS 179
Query: 208 PGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQIL 267
PGWSNAD+ LT F+ L+ Y KNR+K +TS LSP+LHFGE+SVRKVF + +KQ+L
Sbjct: 180 PGWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVL 239
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRYL FN P++HERPLL +LK+FPW D G FKAW
Sbjct: 240 WANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAW 299
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+V+SF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 300 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLE 359
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPDG E +R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIHHPW+A
Sbjct: 360 SDALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 419
Query: 448 PPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNS 507
P +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NGT E + D+S
Sbjct: 420 PESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSS 479
Query: 508 DRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSF 539
+ A PQ + E++ P ++ DQ VPS
Sbjct: 480 ESAPI-AFPQDINMEENHEPVRNNPPATNRRYEDQMVPSM 518
>gi|339777705|gb|AEK05690.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/531 (57%), Positives = 390/531 (73%), Gaps = 12/531 (2%)
Query: 20 PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79
PALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEI 139
++++LLE + + AT+++FNHLYDP+SLVRDH KE +S+N DLLYEPW++
Sbjct: 61 DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 140 YDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSS 198
D +G FTTFD +W++CL M +P A +LPP R++ +G + C L EDESEK S
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRII--SGDVSRCPSVTLVFEDESEKGS 178
Query: 199 NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVF 258
NALL R WSPGWSNAD+ LT F+ L+ Y NR+K +TS LSP+LHFGE+SVRKVF
Sbjct: 179 NALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVF 238
Query: 259 QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWH 318
+ +KQ+LWA E N G+ESV F++++GLREYSRYL FN P THERPLL +LK+FPW
Sbjct: 239 HLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWV 298
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D G FKAWRQGRTGYPLVDAGMRELWA GW+H+RIRV+V+SF VKVL LPWRWGMKYFW
Sbjct: 299 VDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFW 358
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
DTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPELAR+PT
Sbjct: 359 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT 418
Query: 439 EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNG 498
EWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NG
Sbjct: 419 EWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENG 478
Query: 499 TNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSFQN 541
T E + D+S+ A P+ + E++ P ++ DQ VPS +
Sbjct: 479 TEEGLGDSSESAPF-AFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTS 528
>gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
Length = 556
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/528 (58%), Positives = 401/528 (75%), Gaps = 4/528 (0%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN 532
++EAA A NG+ E + D+++ + P P+ + E++ ++ N
Sbjct: 493 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPN 540
>gi|339777709|gb|AEK05692.1| cryptochrome 1 protein 1 [Populus balsamifera]
gi|339777717|gb|AEK05696.1| cryptochrome 1 protein 1 [Populus balsamifera]
gi|339777719|gb|AEK05697.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/531 (57%), Positives = 390/531 (73%), Gaps = 12/531 (2%)
Query: 20 PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79
PALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEI 139
++++LLE + + AT+++FNHLYDP+SLVRDH KE +S+N DLLYEPW++
Sbjct: 61 DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 140 YDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSS 198
D +G FTTFD +W++CL M +P A +LPP R++ +G + C L EDESEK S
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRII--SGDVSRCPSVTLVFEDESEKGS 178
Query: 199 NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVF 258
NALL R WSPGWSNAD+ LT F+ L+ Y NR+K +TS LSP+LHFGE+SVRKVF
Sbjct: 179 NALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVF 238
Query: 259 QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWH 318
+ +KQ+LWA E N G+ESV F++++GLREYSRYL FN P THERPLL +LK+FPW
Sbjct: 239 HLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWV 298
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D G FKAWRQGRTGYPLVDAGMRELWA GW+H+RIRV+V+SF VKVL LPWRWGMKYFW
Sbjct: 299 VDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFW 358
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
DTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPELAR+PT
Sbjct: 359 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT 418
Query: 439 EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNG 498
EWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NG
Sbjct: 419 EWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENG 478
Query: 499 TNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSFQN 541
T E + D+S+ A P+ + E++ P ++ DQ VPS +
Sbjct: 479 TEEGLGDSSESAPF-AFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTS 528
>gi|339777715|gb|AEK05695.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/531 (57%), Positives = 390/531 (73%), Gaps = 12/531 (2%)
Query: 20 PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79
PALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEI 139
++++LLE + + +T+++FNHLYDP+SLVRDH KE +S+N DLLYEPW++
Sbjct: 61 DSVSSLLEVVKSTGSTQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 140 YDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSS 198
D +G FTTFD +W++CL M +P A +LPP R++ +G + C L EDESEK S
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRII--SGDVSRCPSVTLVFEDESEKGS 178
Query: 199 NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVF 258
NALL R WSPGWSNAD+ LT F+ L+ Y NR+K +TS LSP+LHFGE+SVRKVF
Sbjct: 179 NALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVF 238
Query: 259 QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWH 318
+ +KQ+LWA E N G+ESV F++++GLREYSRYL FN P THERPLL +LK+FPW
Sbjct: 239 HLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWV 298
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D G FKAWRQGRTGYPLVDAGMRELWA GW+H+RIRV+V+SF VKVL LPWRWGMKYFW
Sbjct: 299 VDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFW 358
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
DTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPELAR+PT
Sbjct: 359 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT 418
Query: 439 EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNG 498
EWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NG
Sbjct: 419 EWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENG 478
Query: 499 TNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSFQN 541
T E + D+S+ A P+ + E++ P ++ DQ VPS +
Sbjct: 479 TEEGLGDSSESAPF-AFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTS 528
>gi|339777711|gb|AEK05693.1| cryptochrome 1 protein 1 [Populus balsamifera]
gi|339777713|gb|AEK05694.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/531 (57%), Positives = 389/531 (73%), Gaps = 12/531 (2%)
Query: 20 PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79
PALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEI 139
++++LLE + + T+++FNHLYDP+SLVRDH KE +S+N DLLYEPW++
Sbjct: 61 DSVSSLLEVVKSTGXTQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 140 YDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSS 198
D +G FTTFD +W++CL M +P A +LPP R++ +G + C L EDESEK S
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRII--SGDVSRCPSVTLVFEDESEKGS 178
Query: 199 NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVF 258
NALL R WSPGWSNAD+ LT F+ L+ Y NR+K +TS LSP+LHFGE+SVRKVF
Sbjct: 179 NALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVF 238
Query: 259 QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWH 318
+ +KQ+LWA E N G+ESV F++++GLREYSRYL FN P THERPLL +LK+FPW
Sbjct: 239 HLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWV 298
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D G FKAWRQGRTGYPLVDAGMRELWA GW+H+RIRV+V+SF VKVL LPWRWGMKYFW
Sbjct: 299 VDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFW 358
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
DTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPELAR+PT
Sbjct: 359 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT 418
Query: 439 EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNG 498
EWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A NG
Sbjct: 419 EWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENG 478
Query: 499 TNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSFQN 541
T E + D+S+ A P+ + E++ P ++ DQ VPS +
Sbjct: 479 TEEGLGDSSESAPF-AFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTS 528
>gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum]
Length = 700
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/547 (60%), Positives = 404/547 (73%), Gaps = 10/547 (1%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
RT+VWFRRDLR+EDNPALAAAAR G V P Y W PKE+G +YPGRVSRWWL QSL +L
Sbjct: 17 TRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPKEDGPYYPGRVSRWWLSQSLKHL 76
Query: 63 GQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL+ LGA LV ++ T+AALLE + + AT + FNHLYDP+SLVRDH +K+ L
Sbjct: 77 DASLRRLGATRLVTRRSTDTVAALLELVRSTGATHLFFNHLYDPLSLVRDHRVKQVLGAE 136
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GI+VQS+N DLLYEPWE+ D+ G FT F +W+ CL M PA +LPP R + +
Sbjct: 137 GITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVDPPAPMLPPKR-INSGELSR 195
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
CS +DL EDESE+ SNALL R WSPGW NADK T F+ L+ Y NR+K +TS
Sbjct: 196 CCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKADSANTS 255
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGELSVRKVF + MKQ+ W+ E N +G+E + FLR++GLREYSR L FN P
Sbjct: 256 LLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSLFLRSIGLREYSRRLAFNHP 315
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 316 CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 375
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFDP
Sbjct: 376 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDP 435
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL A+
Sbjct: 436 YGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGSNYPLPIVELDEAKSRLQDAL 495
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLREKSTCPTISS-----NDQ 534
+MWE+EAA A NG E + D+SD I P Q + +++T T ++ DQ
Sbjct: 496 SEMWELEAASRAEIENGMEEGLGDSSDEPPIAFPQELQHMEVDRATIHTPATAGRRRADQ 555
Query: 535 KVPSFQN 541
VPS +
Sbjct: 556 MVPSITS 562
>gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum]
Length = 375
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/375 (80%), Positives = 338/375 (90%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG NRTIVWFRRDLRIEDNPALAAAARDGSVFPV+ WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MGSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L QSLKSLGA+LVL KT+STL ALLEC++AI+ATKVVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLDQSLKSLGAKLVLIKTDSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
LGISV+SYNGDLLYEPWE+YDE+GHAFTTFD +W++CL QMEP S++PPW+L+ A G +
Sbjct: 121 LGISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKV 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ CSIEDLGLE+E EK SNALLGR WSPGW NA+K LTEF+++ LL Y KNRQK+GG+ST
Sbjct: 181 ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVFQ +KQI W E N GKESVT FLRA+GLREYSRYLCFNF
Sbjct: 241 SLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNF 300
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHER LL +L +FPW+AD NFK WRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 301 PFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360
Query: 361 FAVKVLLLPWRWGMK 375
FAVK+LLLPW+WGMK
Sbjct: 361 FAVKMLLLPWKWGMK 375
>gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group]
Length = 700
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 412/552 (74%), Gaps = 14/552 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +L
Sbjct: 19 RTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 78
Query: 64 QSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL+ LGA +LV ++ + ALL+ + AT++ FNHLYDP+SLVRDH +KE + G
Sbjct: 79 ASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEG 138
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTID 181
I VQS+N DLLYEPWE+ D+ G +FT F +W++CL M +PA+ +LPP R+ +G +
Sbjct: 139 IIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRI--NSGDLS 196
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
C +DL ED+SE+ SNALL R WSPGW NADK LT F+ L+ Y NR+K STS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN P
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 317 CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 376
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KFDP
Sbjct: 377 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDP 436
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI+ LD RL +A+
Sbjct: 437 HGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEAL 496
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQV-VLRE--KSTCPTISS----N 532
+MW++EAA A NG E + D+S+ I+ P Q+ V RE + T +++
Sbjct: 497 SEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRRE 556
Query: 533 DQKVPSFQNGKN 544
DQ VP+ + N
Sbjct: 557 DQMVPTMTSSLN 568
>gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group]
gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group]
gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group]
Length = 700
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 412/552 (74%), Gaps = 14/552 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +L
Sbjct: 19 RTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 78
Query: 64 QSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL+ LGA +LV ++ + ALL+ + AT++ FNHLYDP+SLVRDH +KE + G
Sbjct: 79 ASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEG 138
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTID 181
I VQS+N DLLYEPWE+ D+ G +FT F +W++CL M +PA+ +LPP R+ +G +
Sbjct: 139 IIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRI--NSGDLS 196
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
C +DL ED+SE+ SNALL R WSPGW NADK LT F+ L+ Y NR+K STS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN P
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 317 CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 376
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KFDP
Sbjct: 377 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDP 436
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI+ LD RL +A+
Sbjct: 437 HGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEAL 496
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQV-VLRE--KSTCPTISS----N 532
+MW++EAA A NG E + D+S+ I+ P Q+ V RE + T +++
Sbjct: 497 SEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRRE 556
Query: 533 DQKVPSFQNGKN 544
DQ VP+ + N
Sbjct: 557 DQMVPTMTSSLN 568
>gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group]
gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group]
Length = 693
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 412/552 (74%), Gaps = 14/552 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +L
Sbjct: 12 RTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 71
Query: 64 QSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL+ LGA +LV ++ + ALL+ + AT++ FNHLYDP+SLVRDH +KE + G
Sbjct: 72 ASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEG 131
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTID 181
I VQS+N DLLYEPWE+ D+ G +FT F +W++CL M +PA+ +LPP R+ +G +
Sbjct: 132 IIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRI--NSGDLS 189
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
C +DL ED+SE+ SNALL R WSPGW NADK LT F+ L+ Y NR+K STS
Sbjct: 190 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 249
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN P
Sbjct: 250 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 309
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 310 CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 369
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KFDP
Sbjct: 370 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDP 429
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI+ LD RL +A+
Sbjct: 430 HGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEAL 489
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQV-VLRE--KSTCPTISS----N 532
+MW++EAA A NG E + D+S+ I+ P Q+ V RE + T +++
Sbjct: 490 SEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRRE 549
Query: 533 DQKVPSFQNGKN 544
DQ VP+ + N
Sbjct: 550 DQMVPTMTSSLN 561
>gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum]
Length = 698
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/548 (60%), Positives = 402/548 (73%), Gaps = 12/548 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +L
Sbjct: 15 TRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHL 74
Query: 63 GQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL+ LGA LV ++ T+AALLE + + AT + FNHLYDP+SLVRDH +K+ L
Sbjct: 75 DASLRRLGATRLVTRRSTDTVAALLELVRSTGATHLFFNHLYDPLSLVRDHRVKQVLGAE 134
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GI+VQS+N DLLYEPWE+ D+ G FT F +W+ CL M PA +LPP R + +
Sbjct: 135 GITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVDPPAPMLPPKR-INSGELSR 193
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
CS +DL EDESE+ SNALL R WSPGW NADK T F+ L+ Y NR+K +TS
Sbjct: 194 CCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKADSANTS 253
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGELSVRKVF + MKQ+ W+ E N +G+E + FLR++GLREYSRYL FN P
Sbjct: 254 LLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSLFLRSIGLREYSRYLAFNHP 313
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 314 CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 373
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFDP
Sbjct: 374 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDP 433
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL A+
Sbjct: 434 CGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDAL 493
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------ND 533
+MWE+EAA A NG E + D+SD A PQ + + TI + D
Sbjct: 494 SEMWELEAASRAEIENGMEEGLGDSSDEPPI-AFPQELQHMEVDRATIHTPAMAGRRRAD 552
Query: 534 QKVPSFQN 541
Q VPS +
Sbjct: 553 QMVPSITS 560
>gi|339777707|gb|AEK05691.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/531 (57%), Positives = 389/531 (73%), Gaps = 12/531 (2%)
Query: 20 PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79
PALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++L SL+SLG LV ++
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEI 139
++++LLE + + AT+++FNHLYDP+SLVRDH KE +S+N DLLYEPW++
Sbjct: 61 DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 140 YDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSS 198
D +G FTTFD +W++CL M +P A +LPP R++ +G + C L EDESEK S
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRII--SGDVSRCPSVTLVFEDESEKGS 178
Query: 199 NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVF 258
NALL R WSPGWSNAD+ LT F+ L+ Y NR+K +TS LSP+LHFGE+SVRKVF
Sbjct: 179 NALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVF 238
Query: 259 QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWH 318
+ +KQ+LWA E N G+ESV F++++GLREYSRYL FN P THERPLL +LK+FPW
Sbjct: 239 HLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWV 298
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D G FKAWRQGRTGYPLVDAGMRELWA GW+H+RIRV+V+SF VKVL LPWRWGMKYFW
Sbjct: 299 VDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFW 358
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
DTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPELAR+PT
Sbjct: 359 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT 418
Query: 439 EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNG 498
EWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+ +MW+ EAA A G
Sbjct: 419 EWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIEIG 478
Query: 499 TNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQKVPSFQN 541
T E + D+S+ A P+ + E++ P ++ DQ VPS +
Sbjct: 479 TEEGLGDSSESAPF-AFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTS 528
>gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/496 (61%), Positives = 385/496 (77%), Gaps = 3/496 (0%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNE 501
++EAA A NG+ E
Sbjct: 493 QLEAASRAAIENGSEE 508
>gi|350537989|ref|NP_001234577.1| cryptochrome 1b [Solanum lycopersicum]
gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum]
gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum]
Length = 583
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/518 (59%), Positives = 388/518 (74%), Gaps = 3/518 (0%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
G +IVWFRRDLR+EDNPALAAA R GSV V+ W P+EEG + PGRVSRWW+K+SL++L
Sbjct: 4 GGCSIVWFRRDLRLEDNPALAAAVRAGSVIAVFIWAPEEEGYYCPGRVSRWWIKKSLAHL 63
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SLK LG L+ ++ ++++LL+ + + AT+V FNHLYDP+SLVRD+ KE L G
Sbjct: 64 DSSLKKLGTSLITKRSNDSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCAKETLSAEG 123
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTID 181
+SV S+N DLLYEPWE+ D+ F+TF +W+KCL M +P A +LPP R++ +G
Sbjct: 124 VSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLPPKRII--SGDAS 181
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
C ++L E E EK SNALL R WSPGWSNADK LT F+ L+ Y KNR K +TS
Sbjct: 182 RCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKADSATTS 241
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP LHFGE+SVRKVF + KQ LWA E N G+ESV FL+++GLRE+SRY+ F P
Sbjct: 242 FLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLKSIGLREFSRYMSFYHP 301
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
++HERPLL LKYFPW D G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 302 YSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+VKVL LPW WGMKYFWDTLLDADLE D LGWQ+I+G+LPDG E +D+P+ +G KFDP
Sbjct: 362 SVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGCEFLGIDNPQFEGYKFDP 421
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI+++ +ERL +A+
Sbjct: 422 NGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPFPIVEIVAAKERLEEAL 481
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVV 519
+MW++EAA + NG E D++D A PQ +
Sbjct: 482 SQMWQLEAAARSAIENGMEEGHGDSTDEFVPIAFPQAM 519
>gi|357149707|ref|XP_003575205.1| PREDICTED: cryptochrome-1-like [Brachypodium distachyon]
Length = 706
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 327/548 (59%), Positives = 402/548 (73%), Gaps = 15/548 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +L
Sbjct: 19 RTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 78
Query: 64 QSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL+ LGA LV ++ T+AALL+ + + AT + FNHLYDP+SLVRDH +KE L G
Sbjct: 79 ASLRRLGASRLVTRRSTDTVAALLDLVRSTGATHLFFNHLYDPLSLVRDHRVKELLAGEG 138
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I+VQS+N DLLYEPWE+ D+ FT F +W+KCL M A +LPP R+ +G +
Sbjct: 139 ITVQSFNSDLLYEPWEVLDDDCCPFTMFTPFWEKCLCMADPAAPLLPPKRI--HSGDLSR 196
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
C +DL EDESE+ SNALL R WSPGW NADK F+ L+ Y N +K +TSL
Sbjct: 197 CPSDDLIFEDESERGSNALLARAWSPGWQNADKAFAAFLNGPLMDYSVNSKKADSANTSL 256
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSPYLHFGELSVRKVF + MKQ+ W+ E N +G+E + FLR++GLREYSRYL FN P
Sbjct: 257 LSPYLHFGELSVRKVFHQVRMKQLTWSNESNLDGEEGCSLFLRSIGLREYSRYLTFNHPC 316
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 317 SHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 376
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFDP
Sbjct: 377 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPY 436
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL +A+
Sbjct: 437 GEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQEALS 496
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSD--------RIQTPAIPQVVLREKSTCPTISSN-- 532
+MWE+EAA A NG E + D+SD +Q + + ++R PT +
Sbjct: 497 EMWELEAASRAEMENGMEEGLGDSSDVPLIAFPQELQQMEVDREMVRGTIHIPTPAGRRR 556
Query: 533 -DQKVPSF 539
DQ VPS
Sbjct: 557 ADQMVPSM 564
>gi|357163871|ref|XP_003579874.1| PREDICTED: cryptochrome-1-like [Brachypodium distachyon]
Length = 712
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 326/558 (58%), Positives = 410/558 (73%), Gaps = 16/558 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
G +++VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G ++PGRVSRWWL QSL
Sbjct: 13 AGMKSVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLK 72
Query: 61 YLGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L SL+ LGA +LV ++ + ALL+ + AT + FNHLYDP+SLVRDH +KE L
Sbjct: 73 HLEASLQRLGAGKLVTRRSADAVVALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLT 132
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAG 178
GI VQS+N DLLY+PWE+ D+ GH FT F +W++CL M +P A +LPP R+ +G
Sbjct: 133 AEGIIVQSFNADLLYDPWEVVDDEGHPFTMFMPFWNRCLSMPYDPPAPLLPPKRI--NSG 190
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ C +DL ED+SE+ SNALL R WSPGW NADK LT F+ L+ Y NR+K
Sbjct: 191 DLLMCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLVDYSVNRKKADSA 250
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRY+CF
Sbjct: 251 NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYICF 310
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
N P +HE+PLL++L++FPW + NFK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 311 NHPCSHEKPLLAHLRFFPWVVNECNFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 370
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPD EL+ +D+P+++G K
Sbjct: 371 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYK 430
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PII+LD + RL
Sbjct: 431 FDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIIELDAAKSRLQ 490
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPT-ISSN----- 532
+A+ +MW++EAA A G E + D+S+ + PQ + E P +++N
Sbjct: 491 EALSEMWQLEAASRAAMDTGMEEGLGDSSE-VPPIEFPQDLQMEVHWEPARVTANVLTTA 549
Query: 533 ----DQKVPSFQNGKNNL 546
DQ VP+ + N +
Sbjct: 550 RRRQDQMVPTMTSSLNRV 567
>gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group]
Length = 710
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 399/552 (72%), Gaps = 12/552 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
G RT+VWFRRDLR+EDNPALAAAAR G V PVY W P+E+G +YPGRVSRWWL QSL
Sbjct: 16 AGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLK 75
Query: 61 YLGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L SL+ LGA LV ++ + AL+E + +I AT + FNHLYDP+SLVRDH +K L
Sbjct: 76 HLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLT 135
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
GI+VQS+N DLLYEPWE+ D+ G FT F +WD+CL M A +LPP R+
Sbjct: 136 AEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAPGELP 195
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
C ++L EDESE+ SNALL R WSPGW NADK L F+ L+ Y NR+K S
Sbjct: 196 ARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSAS 255
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLSPYLHFGELSVRKVF + MKQ++W+ E N G ES FLR++GLREYSRYL FN
Sbjct: 256 TSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTFN 315
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P + E+PLL++L++FPW D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VS
Sbjct: 316 HPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 375
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KF
Sbjct: 376 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKF 435
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL
Sbjct: 436 DPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAKTRLQD 495
Query: 480 AIFKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQVVLREKSTCPTISS------ 531
A+ +MWE+EAA A NG E + D+SD I P Q+ + PT+
Sbjct: 496 ALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDRAPAQPTVHGPTTAGR 555
Query: 532 --NDQKVPSFQN 541
DQ VPS +
Sbjct: 556 RREDQMVPSMTS 567
>gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group]
gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group]
gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group]
Length = 718
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 399/552 (72%), Gaps = 12/552 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
G RT+VWFRRDLR+EDNPALAAAAR G V PVY W P+E+G +YPGRVSRWWL QSL
Sbjct: 16 AGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLK 75
Query: 61 YLGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L SL+ LGA LV ++ + AL+E + +I AT + FNHLYDP+SLVRDH +K L
Sbjct: 76 HLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLT 135
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
GI+VQS+N DLLYEPWE+ D+ G FT F +WD+CL M A +LPP R+
Sbjct: 136 AEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAPGELP 195
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
C ++L EDESE+ SNALL R WSPGW NADK L F+ L+ Y NR+K S
Sbjct: 196 ARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSAS 255
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLSPYLHFGELSVRKVF + MKQ++W+ E N G ES FLR++GLREYSRYL FN
Sbjct: 256 TSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTFN 315
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P + E+PLL++L++FPW D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VS
Sbjct: 316 HPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 375
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KF
Sbjct: 376 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKF 435
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL
Sbjct: 436 DPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAKTRLQD 495
Query: 480 AIFKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQVVLREKSTCPTISS------ 531
A+ +MWE+EAA A NG E + D+SD I P Q+ + PT+
Sbjct: 496 ALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDRAPAQPTVHGPTTAGR 555
Query: 532 --NDQKVPSFQN 541
DQ VPS +
Sbjct: 556 RREDQMVPSMTS 567
>gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor]
Length = 690
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 322/542 (59%), Positives = 398/542 (73%), Gaps = 15/542 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
R++VWFRRDLR+EDNPALAAAAR G V P Y W P+EEG +YPGRVSRWW+ QSL L
Sbjct: 16 RSVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKRLD 75
Query: 64 QSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL+ LGA +LV ++ + ALL+ + AT V FNHLYDP+SLVRDH +KE L G
Sbjct: 76 ASLRRLGAGKLVTRRSADAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAEG 135
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I VQS+N DLLYEPWE+ D+ G FT F A+W++CL MQ +P + L P + + + G +
Sbjct: 136 IVVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINS-GDLSM 194
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
C EDL ED+SE+ SNALL R W+PGW NADK LT F+ L Y NR+K STSL
Sbjct: 195 CPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSL 254
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN P
Sbjct: 255 LSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS 314
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+HERPLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 315 SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 374
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+GSLPD EL+R+D+P+ +G KFDP
Sbjct: 375 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKFDPH 434
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR+W+PEL R+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL +A+
Sbjct: 435 GEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQEALS 494
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNS------------DRIQTPAIPQVVLREKSTCPTIS 530
+MW++EAA A +NG E + D+S DR + V RE PT++
Sbjct: 495 EMWQLEAASRATMNNGMEEGLGDSSEVPFPEELQMEVDRATANVVMTVRRREDQMVPTMT 554
Query: 531 SN 532
S+
Sbjct: 555 SS 556
>gi|413937401|gb|AFW71952.1| cryptochrome 1 [Zea mays]
Length = 707
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 330/549 (60%), Positives = 402/549 (73%), Gaps = 14/549 (2%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G R +VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +
Sbjct: 15 GARAVVWFRRDLRVEDNPALAAAARAAGEVVPAYVWAPEEDGAYYPGRVSRWWLSQSLKH 74
Query: 62 LGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+ LGA LV ++ +AALL+ + AT + FNHLYDP+SLVRD+ +KE+L
Sbjct: 75 LDASLRRLGAARLVTRRSNDAVAALLDLVRCTGATHLFFNHLYDPLSLVRDYRVKEQLAA 134
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI VQS+N DLLYEPWE+ DE FT F +W++CL M A +LPP R+ +G +
Sbjct: 135 EGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPPKRI--NSGDL 192
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C ++L EDESE+ SNALL R WSPGW NADK LT F+ L+ Y NR+K ST
Sbjct: 193 SRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVNRKKADSAST 252
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVF + MKQ++W+ + N G+ES T FLR++GLREYSRYL FN
Sbjct: 253 SLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSRYLTFNH 312
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P +HE+PLLS+L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 313 PCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSS 372
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFD
Sbjct: 373 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFD 432
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP+PI++LD RL A
Sbjct: 433 PHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAANSRLQDA 492
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLREKSTCPTISS------- 531
+ +MWE+EAA A NG E + D++D I P ++ + + P I +
Sbjct: 493 LSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVDRQPVQPAIHAPGVTGRR 552
Query: 532 -NDQKVPSF 539
DQ VPS
Sbjct: 553 REDQMVPSM 561
>gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
Length = 712
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 324/558 (58%), Positives = 404/558 (72%), Gaps = 16/558 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
G + +VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G ++PGRVSRWWL QSL
Sbjct: 13 AGMKCVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLK 72
Query: 61 YLGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L SL LGA +LV ++ ++AALL+ + AT + FNHLYDP+SLVRDH +KE L
Sbjct: 73 HLEASLHRLGAGKLVTRRSADSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLT 132
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAG 178
GI VQS+N DLLY+PWE+ D+ G F F +W++CL M +P A +LPP R+ +G
Sbjct: 133 SEGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRI--NSG 190
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ C +DL EDESE+ SNALL R WSPGW NADK L+ F+ L+ Y NR+K
Sbjct: 191 DLSMCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSA 250
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYLCF
Sbjct: 251 NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCF 310
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
N P +HE+PLL++L++FPW D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 311 NHPCSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 370
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPD EL+ +D+P+++G K
Sbjct: 371 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYK 430
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI++LD + RL
Sbjct: 431 FDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQ 490
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLRE-----KSTCPTISSN- 532
+A+ +MW++EAA A G E + D+S+ + PQ + E P + +
Sbjct: 491 EALSEMWQLEAASRAAMDTGMEEGLGDSSE-VPPIEFPQDLQMEVHWEPARVAPNVLTTA 549
Query: 533 ----DQKVPSFQNGKNNL 546
DQ VP+ N +
Sbjct: 550 QRRQDQMVPTMTTSLNRV 567
>gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor]
Length = 691
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 321/542 (59%), Positives = 398/542 (73%), Gaps = 15/542 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
R++VWFRRDLR+EDNPALAAAAR G V P Y W P+EEG +YPGRVSRWW+ QSL +L
Sbjct: 17 RSVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKHLD 76
Query: 64 QSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL+ LGA +LV ++ + ALL+ + AT V FNHLYDP+SLVRDH +KE L G
Sbjct: 77 ASLRRLGAGKLVTRRSADAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAEG 136
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I VQS+N DLLYEPWE+ D+ FT F A+W++CL MQ +P + L P + + + G +
Sbjct: 137 IVVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINS-GDLSM 195
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
C EDL ED+SE+ SNALL R W+PGW NADK LT F+ L Y NR+K STSL
Sbjct: 196 CPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSL 255
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN P
Sbjct: 256 LSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS 315
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+HERPLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 316 SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 375
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+GSLPD EL+R+D+P+ +G KFDP
Sbjct: 376 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKFDPH 435
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR+W+PEL R+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL +A+
Sbjct: 436 GEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQEALS 495
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNS------------DRIQTPAIPQVVLREKSTCPTIS 530
+MW++EAA A +NG E + D+S DR + V RE PT++
Sbjct: 496 EMWQLEAASRATMNNGMEEGLGDSSEVPFPEELQMEVDRATANVVMTVRRREDQMVPTMT 555
Query: 531 SN 532
S+
Sbjct: 556 SS 557
>gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
Length = 494
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/492 (62%), Positives = 381/492 (77%), Gaps = 7/492 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG + TIVWFRRDLR+EDNPALAAA++ G+V P++ WC +EEG+F PGRVSRWWLKQSL
Sbjct: 1 MGSSTTIVWFRRDLRVEDNPALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLM 60
Query: 61 YLGQSLKSLGAELVLFKTE-STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L SL LG L++ K+ S+L ALL+ KAT+V +NHLYDPVSL+RDH +K L
Sbjct: 61 HLNSSLAKLGCPLLMQKSRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGLS 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAA- 177
+ GI+VQ++N DLLYEPWE++D RG+ +T F +W + L M EP +LPP RL A
Sbjct: 121 QYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPAE 180
Query: 178 ---GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
G + G E+LGLED+ EKSSNA+L R W+PGWSNA+K L F+ L Y NR K
Sbjct: 181 PGLGHL-GLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNRGK 239
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ G +TS+LSP+LH+GELS+RKVF + KQ+LW + + S + FLRA+G REYSR
Sbjct: 240 VDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSR 299
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
YLCF+FPFTHER LL +L++FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+HNRI
Sbjct: 300 YLCFHFPFTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRI 359
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
RVIVSSF VK L LPWRWGMKYFWDTLLDADLE DILGWQYISGSLPDGHEL+R++ P +
Sbjct: 360 RVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPHV 419
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
+G +FDP+G YVR+WLPEL+R+PTEWIH PW+APP+VL AAG+ELG NYP+P++++ R
Sbjct: 420 EGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAAR 479
Query: 475 ERLTQAIFKMWE 486
ERL + + MWE
Sbjct: 480 ERLQRGLRDMWE 491
>gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
Length = 494
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/492 (62%), Positives = 381/492 (77%), Gaps = 7/492 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
MG + TIVWFRRDLR+EDNPALAAA++ G+V P++ WC +EEG+F PGRVSRWWLKQSL
Sbjct: 1 MGSSTTIVWFRRDLRVEDNPALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLM 60
Query: 61 YLGQSLKSLGAELVLFKTE-STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L SL LG L++ K+ S+L ALL+ KAT+V +NHLYDPVSL+RDH +K L
Sbjct: 61 HLNSSLTKLGCPLLMQKSRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGLS 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAA- 177
+ GI+VQ++N DLLYEPWE++D RG+ +T F +W + L M EP +LPP RL A
Sbjct: 121 QYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPAE 180
Query: 178 ---GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
G + G E+LGLED+ EKSSNA+L R W+PGWSNA+K L F+ L Y NR K
Sbjct: 181 PGLGHL-GLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNRGK 239
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ G +TS+LSP+LH+GELS+RKVF + KQ+LW + + S + FLRA+G REYSR
Sbjct: 240 VDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSR 299
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
YLCF+FPFTHER LL +L++FPW D G FKAWRQGRTGYPLVDAGMRELWATGW+HNRI
Sbjct: 300 YLCFHFPFTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRI 359
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
RVIVSSF VK L LPWRWGMKYFWDTLLDADLE DILGWQYISGSLPDGHEL+R++ P I
Sbjct: 360 RVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPHI 419
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
+G +FDP+G YVR+WLPEL+R+PTEWIH PW+APP+VL AAG+ELG NYP+P++++ R
Sbjct: 420 EGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAAR 479
Query: 475 ERLTQAIFKMWE 486
ERL + + MWE
Sbjct: 480 ERLQRGLRDMWE 491
>gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays]
gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays]
Length = 699
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 328/549 (59%), Positives = 403/549 (73%), Gaps = 14/549 (2%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G R +VWFRRDLR+EDNPALAAA R G V P Y W P+E+G +YPGRVSRWWL QSL +
Sbjct: 15 GARAVVWFRRDLRVEDNPALAAAPRAAGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKH 74
Query: 62 LGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+ LGA LV ++ + AL++ + + AT + FNHLYDP+SLVRDH +KE+L
Sbjct: 75 LDASLRRLGACRLVTRRSSDAVVALIDLVRSTGATHLFFNHLYDPLSLVRDHRVKEQLAA 134
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI VQS+N DLLYEPWE+ DE FT F +W++CL M A +LPP R+ +G +
Sbjct: 135 EGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPPKRI--NSGDL 192
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C ++L EDESE+ SNALL R WSPGW NADK LT F+ L+ Y NR+K ST
Sbjct: 193 SRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVNRKKADSAST 252
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVF + MKQ++W+ + N G+ES T FLR++GLREYSRYL FN
Sbjct: 253 SLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSRYLTFNH 312
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P +HE+PLLS+L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 313 PCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSS 372
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFD
Sbjct: 373 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFD 432
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD + RL A
Sbjct: 433 PHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAKGRLQAA 492
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLREKSTCPTISS------- 531
+ +MW++EAA A +NGT E + D+SD I P ++ + + P I +
Sbjct: 493 LSEMWQLEAASRATMNNGTEEGLGDSSDEPPIDFPQELRMEVDRQPVQPAIHAPGVTGRR 552
Query: 532 -NDQKVPSF 539
DQ VPS
Sbjct: 553 REDQMVPSM 561
>gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
(SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
N=1) [Arabidopsis thaliana]
Length = 702
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 314/577 (54%), Positives = 410/577 (71%), Gaps = 34/577 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE++ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVA--------------WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 298
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 299 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 358
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 359 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 418
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 419 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 478
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 479 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSIT 538
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 539 S------SLIRPEEDEESS------LNLRNSVGDSRA 563
>gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group]
Length = 697
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/545 (59%), Positives = 405/545 (74%), Gaps = 14/545 (2%)
Query: 12 RDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLG 70
RDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +L SL+ LG
Sbjct: 23 RDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRLG 82
Query: 71 A-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129
A +LV ++ + ALL+ + AT++ FNHLYDP+SLVRDH +KE + GI VQS+N
Sbjct: 83 AGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQSFN 142
Query: 130 GDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSIEDL 188
DLLYEPWE+ D+ G +FT F +W++CL M +PA+ +LPP R+ +G + C +DL
Sbjct: 143 ADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRI--NSGDLSMCPSDDL 200
Query: 189 GLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLH 248
ED+SE+ SNALL R WSPGW NADK LT F+ L+ Y NR+K STSLLSPYLH
Sbjct: 201 IFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYLH 260
Query: 249 FGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPL 308
FGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN P +HE+PL
Sbjct: 261 FGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSHEKPL 320
Query: 309 LSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLL 368
L++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL L
Sbjct: 321 LAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 380
Query: 369 PWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQ 428
PWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KFDP GEYVR+
Sbjct: 381 PWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRR 440
Query: 429 WLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEME 488
WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI+ LD RL +A+ +MW++E
Sbjct: 441 WLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMWQLE 500
Query: 489 AADNAMDSNGTNEVVFDNSD--RIQTPAIPQV-VLRE--KSTCPTISS----NDQKVPSF 539
AA A NG E + D+S+ I+ P Q+ V RE + T +++ DQ VP+
Sbjct: 501 AASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQMVPTM 560
Query: 540 QNGKN 544
+ N
Sbjct: 561 TSSLN 565
>gi|413922771|gb|AFW62703.1| cryptochrome 2 [Zea mays]
Length = 707
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 329/552 (59%), Positives = 405/552 (73%), Gaps = 15/552 (2%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +
Sbjct: 15 GVRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKH 74
Query: 62 LGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+ LGA LV ++ + AL++ + + AT + FN LYDP+SLVRDH +KE+L
Sbjct: 75 LDASLRRLGACRLVTRRSSDAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSA 134
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI+VQS+N DLLYEPWE+ D+ G FT F +W++CL M A +LPP R+ +G +
Sbjct: 135 EGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRI--NSGDL 192
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C ++L EDESEK SNALL R WSPGW NADK LT F++ L+ Y N +K ST
Sbjct: 193 SRCPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKKADSAST 252
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVF + MKQ++W+ + + G+ES T FLRA+GLREYSRYL FN
Sbjct: 253 SLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRYLTFNH 312
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + E+PLLS+L++FPW D +FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 313 PCSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSS 372
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFD
Sbjct: 373 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFD 432
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP+PI++LD RL A
Sbjct: 433 PHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAANSRLQGA 492
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLREKSTCPTI--------- 529
+ +MWE+EAA A NG E + D++D I P ++ + + P I
Sbjct: 493 LSEMWELEAASCAAIENGMEEGLGDSTDEPPIDFPQELRMEVDRQPAQPAIIHTPVVAGW 552
Query: 530 SSNDQKVPSFQN 541
DQ+VPS +
Sbjct: 553 RREDQRVPSMTS 564
>gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
Length = 489
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 296/487 (60%), Positives = 378/487 (77%), Gaps = 6/487 (1%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPALAAA AR GS V PV+ WCP+EEGQF PGRVSRWWLKQSL L
Sbjct: 5 LVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLIQLSS 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LGA L++ +T TL ALL+ A++V +NHLYDPVSL+RDH +K+ L + GIS
Sbjct: 65 SLERLGAPLLVRRTAGTLDALLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLADHGIS 124
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI-DGC 183
V+++ GDLLYEPWEIYD++G FTTF A+W K L M+ A +LPP +L+ G + C
Sbjct: 125 VKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMRDPEAPLLPPRQLLSLPGYLCQSC 184
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
SI+ LGLE+E+EKSSNALL R W+PGW DK T+F+ +L+Y R+++ +TS L
Sbjct: 185 SIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQYSIRRKQIDSVTTSQL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S+RK+F + M+Q + + ES+ FLRA+GLREYSRYL FNFPFT
Sbjct: 245 SPHLHFGEISIRKIFYSIRMQQF---RSKEAVDVESMNMFLRALGLREYSRYLSFNFPFT 301
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
H+R LL+NLK+FPW AD G FK+WRQGRTGYPLVDAGMR+LWATGW+H +IRV+VSSF V
Sbjct: 302 HKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVVVSSFLV 361
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L +PW WGMKYFW+TLLDAD+E D+LGWQYISG LPDGHEL+R ++P+++G K DP+G
Sbjct: 362 KFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGYKLDPKG 421
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EYVR+WLPEL+R+P +WIHHPWDAP +L+AAGVELG NYP+PI+++ R QA+ +
Sbjct: 422 EYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQQQALDE 481
Query: 484 MWEMEAA 490
MW+ A
Sbjct: 482 MWKKSAT 488
>gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group]
gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group]
Length = 719
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 331/561 (59%), Positives = 399/561 (71%), Gaps = 21/561 (3%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
G RT+VWFRRDLR+EDNPALAAAAR G V PVY W P+E+G +YPGRVSRWWL QSL
Sbjct: 16 AGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLK 75
Query: 61 YLGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLY---------DPVSLVR 110
+L SL+ LGA LV ++ + AL+E + +I AT + FNHLY DP+SLVR
Sbjct: 76 HLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYGSIDPEFQIDPLSLVR 135
Query: 111 DHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP 170
DH +K L GI+VQS+N DLLYEPWE+ D+ G FT F +WD+CL M A +LPP
Sbjct: 136 DHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPP 195
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
R+ C ++L EDESE+ SNALL R WSPGW NADK L F+ L+ Y
Sbjct: 196 KRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSV 255
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
NR+K STSLLSPYLHFGELSVRKVF + MKQ++W+ E N G ES FLR++GLR
Sbjct: 256 NRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLR 315
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
EYSRYL FN P + E+PLL++L++FPW D FK WRQGRTGYPLVDAGMRELWATGW+
Sbjct: 316 EYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWL 375
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D
Sbjct: 376 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 435
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
+P+++G KFDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++L
Sbjct: 436 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVEL 495
Query: 471 DLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQVVLREKSTCPT 528
D + RL A+ +MWE+EAA A NG E + D+SD I P Q+ + PT
Sbjct: 496 DAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDRAPAQPT 555
Query: 529 ISS--------NDQKVPSFQN 541
+ DQ VPS +
Sbjct: 556 VHGPTTAGRRREDQMVPSMTS 576
>gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays]
gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays]
Length = 643
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 329/552 (59%), Positives = 405/552 (73%), Gaps = 15/552 (2%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFRRDLR+EDNPALAAAAR G V P Y W P+E+G +YPGRVSRWWL QSL +
Sbjct: 15 GVRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKH 74
Query: 62 LGQSLKSLGA-ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+ LGA LV ++ + AL++ + + AT + FN LYDP+SLVRDH +KE+L
Sbjct: 75 LDASLRRLGACRLVTRRSSDAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSA 134
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI+VQS+N DLLYEPWE+ D+ G FT F +W++CL M A +LPP R+ +G +
Sbjct: 135 EGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRI--NSGDL 192
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C ++L EDESEK SNALL R WSPGW NADK LT F++ L+ Y N +K ST
Sbjct: 193 SRCPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKKADSAST 252
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVF + MKQ++W+ + + G+ES T FLRA+GLREYSRYL FN
Sbjct: 253 SLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRYLTFNH 312
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + E+PLLS+L++FPW D +FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 313 PCSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSS 372
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFD
Sbjct: 373 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFD 432
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP+PI++LD RL A
Sbjct: 433 PHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAANSRLQGA 492
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLREKSTCPTI--------- 529
+ +MWE+EAA A NG E + D++D I P ++ + + P I
Sbjct: 493 LSEMWELEAASCAAIENGMEEGLGDSTDEPPIDFPQELRMEVDRQPAQPAIIHTPVVAGW 552
Query: 530 SSNDQKVPSFQN 541
DQ+VPS +
Sbjct: 553 RREDQRVPSMTS 564
>gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis]
gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis]
Length = 660
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 314/547 (57%), Positives = 388/547 (70%), Gaps = 29/547 (5%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
GG +IVWFRRDLR+EDNPALAA R G+V V+ W P+EEG +YPGRVSRWWLKQSL++
Sbjct: 3 GGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L SL+SLG LV ++ ++++LLE + + AT++ FNHLYDP+SLVRDH KE L
Sbjct: 63 LDSSLRSLGTVLVSKRSTDSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRAKEVLTAQ 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTI 180
GI+V+S P CL M +P A +LPP R++ +G I
Sbjct: 123 GIAVRSLTRICYMNPGX-----------------XCLSMPYDPEAPLLPPKRII--SGDI 163
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + L EDESEK SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +T
Sbjct: 164 SRCPSDTLIFEDESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 223
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+SVRKV + +KQ+LWA E N G+ESV FL+++GLREYSRYL FN
Sbjct: 224 SFLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 283
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P++HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 284 PYSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 343
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG E +R+D+P+ +G KFD
Sbjct: 344 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 403
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A
Sbjct: 404 PHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLQEA 463
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVV--------LREKSTCPTISSN 532
+ +MW+ EAA A NGT E + D+S+ A PQ + +R P
Sbjct: 464 LSEMWQHEAASRAAIENGTEEGLGDSSESAPI-AFPQDIQMEENLEPIRNNPPIPIRRYE 522
Query: 533 DQKVPSF 539
DQ VPS
Sbjct: 523 DQMVPSM 529
>gi|343407874|gb|AEM06544.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407878|gb|AEM06546.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407882|gb|AEM06548.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407886|gb|AEM06550.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407888|gb|AEM06551.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407890|gb|AEM06552.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407892|gb|AEM06553.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407894|gb|AEM06554.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407896|gb|AEM06555.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407898|gb|AEM06556.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407900|gb|AEM06557.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407902|gb|AEM06558.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407906|gb|AEM06560.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407908|gb|AEM06561.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407910|gb|AEM06562.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407918|gb|AEM06566.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407920|gb|AEM06567.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407922|gb|AEM06568.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407924|gb|AEM06569.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407926|gb|AEM06570.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407928|gb|AEM06571.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407930|gb|AEM06572.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407932|gb|AEM06573.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407934|gb|AEM06574.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407936|gb|AEM06575.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407938|gb|AEM06576.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407940|gb|AEM06577.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407942|gb|AEM06578.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407946|gb|AEM06580.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407948|gb|AEM06581.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407952|gb|AEM06583.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407956|gb|AEM06585.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407958|gb|AEM06586.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407960|gb|AEM06587.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407962|gb|AEM06588.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407964|gb|AEM06589.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407970|gb|AEM06592.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407972|gb|AEM06593.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407974|gb|AEM06594.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407978|gb|AEM06596.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407980|gb|AEM06597.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407984|gb|AEM06599.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407986|gb|AEM06600.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407988|gb|AEM06601.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407990|gb|AEM06602.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407994|gb|AEM06604.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407998|gb|AEM06606.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408002|gb|AEM06608.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408006|gb|AEM06610.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408008|gb|AEM06611.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408010|gb|AEM06612.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408012|gb|AEM06613.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408014|gb|AEM06614.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408016|gb|AEM06615.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408020|gb|AEM06617.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408022|gb|AEM06618.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408024|gb|AEM06619.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408028|gb|AEM06621.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408030|gb|AEM06622.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408032|gb|AEM06623.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408034|gb|AEM06624.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408036|gb|AEM06625.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408038|gb|AEM06626.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408042|gb|AEM06628.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408044|gb|AEM06629.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408046|gb|AEM06630.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408048|gb|AEM06631.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408050|gb|AEM06632.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408052|gb|AEM06633.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408058|gb|AEM06636.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408060|gb|AEM06637.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408062|gb|AEM06638.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408066|gb|AEM06640.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408068|gb|AEM06641.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408070|gb|AEM06642.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408074|gb|AEM06644.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408076|gb|AEM06645.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408080|gb|AEM06647.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408082|gb|AEM06648.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408084|gb|AEM06649.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408086|gb|AEM06650.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408088|gb|AEM06651.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408090|gb|AEM06652.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408092|gb|AEM06653.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408094|gb|AEM06654.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408096|gb|AEM06655.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408098|gb|AEM06656.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408100|gb|AEM06657.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408102|gb|AEM06658.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408104|gb|AEM06659.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408106|gb|AEM06660.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408108|gb|AEM06661.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408112|gb|AEM06663.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408114|gb|AEM06664.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408116|gb|AEM06665.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408118|gb|AEM06666.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408122|gb|AEM06668.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408124|gb|AEM06669.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408126|gb|AEM06670.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408128|gb|AEM06671.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408132|gb|AEM06673.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408138|gb|AEM06676.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408140|gb|AEM06677.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408142|gb|AEM06678.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408144|gb|AEM06679.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408146|gb|AEM06680.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408150|gb|AEM06682.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408152|gb|AEM06683.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408154|gb|AEM06684.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408160|gb|AEM06687.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408162|gb|AEM06688.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408164|gb|AEM06689.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408166|gb|AEM06690.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408168|gb|AEM06691.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408170|gb|AEM06692.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408172|gb|AEM06693.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408174|gb|AEM06694.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408176|gb|AEM06695.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408178|gb|AEM06696.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408180|gb|AEM06697.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408182|gb|AEM06698.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408184|gb|AEM06699.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408186|gb|AEM06700.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408188|gb|AEM06701.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408190|gb|AEM06702.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408192|gb|AEM06703.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408194|gb|AEM06704.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408196|gb|AEM06705.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408198|gb|AEM06706.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408200|gb|AEM06707.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408202|gb|AEM06708.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408204|gb|AEM06709.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408208|gb|AEM06711.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408210|gb|AEM06712.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408212|gb|AEM06713.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408216|gb|AEM06715.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408218|gb|AEM06716.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408224|gb|AEM06719.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408226|gb|AEM06720.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408228|gb|AEM06721.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408230|gb|AEM06722.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408232|gb|AEM06723.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408234|gb|AEM06724.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408236|gb|AEM06725.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408238|gb|AEM06726.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408240|gb|AEM06727.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408242|gb|AEM06728.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408244|gb|AEM06729.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408246|gb|AEM06730.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180911|gb|AFT63426.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180913|gb|AFT63427.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180919|gb|AFT63430.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180921|gb|AFT63431.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180927|gb|AFT63434.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180929|gb|AFT63435.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180931|gb|AFT63436.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180933|gb|AFT63437.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180935|gb|AFT63438.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180937|gb|AFT63439.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180939|gb|AFT63440.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180941|gb|AFT63441.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180943|gb|AFT63442.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180965|gb|AFT63453.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180967|gb|AFT63454.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180969|gb|AFT63455.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180971|gb|AFT63456.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180973|gb|AFT63457.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180975|gb|AFT63458.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180977|gb|AFT63459.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180979|gb|AFT63460.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180981|gb|AFT63461.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180983|gb|AFT63462.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180985|gb|AFT63463.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180987|gb|AFT63464.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180989|gb|AFT63465.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180991|gb|AFT63466.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180993|gb|AFT63467.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180995|gb|AFT63468.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180997|gb|AFT63469.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180999|gb|AFT63470.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181001|gb|AFT63471.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181003|gb|AFT63472.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181005|gb|AFT63473.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181007|gb|AFT63474.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181009|gb|AFT63475.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181011|gb|AFT63476.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181013|gb|AFT63477.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181015|gb|AFT63478.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181017|gb|AFT63479.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181019|gb|AFT63480.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181021|gb|AFT63481.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181023|gb|AFT63482.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181025|gb|AFT63483.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181027|gb|AFT63484.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181029|gb|AFT63485.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181031|gb|AFT63486.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181033|gb|AFT63487.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181035|gb|AFT63488.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181041|gb|AFT63491.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181043|gb|AFT63492.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181045|gb|AFT63493.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181047|gb|AFT63494.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181049|gb|AFT63495.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181051|gb|AFT63496.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181053|gb|AFT63497.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/439 (66%), Positives = 351/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLA 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 AV--RYNGSKRVKPEEEEE 428
>gi|343407904|gb|AEM06559.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/439 (66%), Positives = 351/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVLGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLA 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 AV--RYNGSKRVKPEEEEE 428
>gi|343408004|gb|AEM06609.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180945|gb|AFT63443.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180947|gb|AFT63444.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180949|gb|AFT63445.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180951|gb|AFT63446.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180953|gb|AFT63447.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180955|gb|AFT63448.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180957|gb|AFT63449.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180959|gb|AFT63450.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180961|gb|AFT63451.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180963|gb|AFT63452.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/439 (66%), Positives = 351/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLA 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 AVH--YNGSKRVKPEEEEE 428
>gi|407180909|gb|AFT63425.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/439 (66%), Positives = 351/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLG 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGASPDEIVADSLEALEANTI-----KEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 AV--RYNGSKRLKPEEEEE 428
>gi|343408072|gb|AEM06643.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/439 (66%), Positives = 351/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLQFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLA 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 --AVRYNGSKRVKPEEEEE 428
>gi|343407884|gb|AEM06549.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407914|gb|AEM06564.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407954|gb|AEM06584.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407966|gb|AEM06590.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407968|gb|AEM06591.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407976|gb|AEM06595.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407996|gb|AEM06605.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408000|gb|AEM06607.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408078|gb|AEM06646.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408134|gb|AEM06674.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408136|gb|AEM06675.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408158|gb|AEM06686.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408206|gb|AEM06710.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180907|gb|AFT63424.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180915|gb|AFT63428.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180917|gb|AFT63429.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180923|gb|AFT63432.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180925|gb|AFT63433.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181037|gb|AFT63489.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181039|gb|AFT63490.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/439 (66%), Positives = 351/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLG 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + ++ I +E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGASPDEIVADSLEALEANTI-----KEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 AV--RYNGSKRLKPEEEEE 428
>gi|343408018|gb|AEM06616.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408148|gb|AEM06681.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/440 (66%), Positives = 349/440 (79%), Gaps = 16/440 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSTESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLA 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEEE 558
+ KR K EEE
Sbjct: 412 AVRYSGS----KRVKPEEEE 427
>gi|343408214|gb|AEM06714.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 293/439 (66%), Positives = 350/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLA 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + A+ +E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTNKEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 AV--RYNGSKRVKPEEEEE 428
>gi|343408056|gb|AEM06635.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 292/439 (66%), Positives = 350/439 (79%), Gaps = 14/439 (3%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAG 178
GISVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAE 60
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GN
Sbjct: 61 AIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGN 120
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CF
Sbjct: 121 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 180
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIV
Sbjct: 181 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 240
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+ LD+P +QG+K
Sbjct: 241 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDCLDNPALQGAK 300
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L
Sbjct: 301 YDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLA 360
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS 538
+AI + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 361 KAISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPS 411
Query: 539 FQNGKNNLPSRKRPKNVEE 557
+ N R +P+ EE
Sbjct: 412 AV--RYNGSKRVKPEEEEE 428
>gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
Length = 539
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 262/442 (59%), Positives = 338/442 (76%), Gaps = 4/442 (0%)
Query: 50 VSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLV 109
+SRWWLKQSL L SL+ LGA L++ + TL ALL+ A++V +NHLYDPVSL+
Sbjct: 1 MSRWWLKQSLIQLSSSLERLGAPLLVKRVAGTLDALLQIAHDTGASQVFYNHLYDPVSLI 60
Query: 110 RDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP 169
RDH +K+ L + GISV ++ GDLLYEPWEIYD++G AFTTF A+W K L M+ A +LP
Sbjct: 61 RDHRVKQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMRDPEAPLLP 120
Query: 170 PWRLVQAAGTI-DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRY 228
P +L+ G + CSI+ LGLE+E+EKSSNALL R W+PGW DK T+F+ +L+Y
Sbjct: 121 PRQLLSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQY 180
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG 288
R+++ +TS LSP+LHFGE+S+RK+F + M+Q + +FE S+ FLRA+G
Sbjct: 181 SIRRKQIDSVTTSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFE---SMNMFLRALG 237
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
LREYSRYL FNFPFTH+R LL+NLK+FPW AD G FK+WRQGRTGYPLVDAGMR+LWATG
Sbjct: 238 LREYSRYLSFNFPFTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATG 297
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
W+H +IRV+VSSF VK L +PW WGMKYFW+TLLDAD+E D+LGWQYISG LPDGHEL+R
Sbjct: 298 WLHCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDR 357
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
++P+ +G K DP+GEYVR+WLPEL+R+P +WIHHPWDAP +L+AAGVELG NYP+PI+
Sbjct: 358 WENPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIV 417
Query: 469 DLDLGRERLTQAIFKMWEMEAA 490
++ R QA+ +MW+ A
Sbjct: 418 EVAAAYYRQQQALDEMWKKSAT 439
>gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula]
Length = 576
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/444 (60%), Positives = 332/444 (74%), Gaps = 12/444 (2%)
Query: 105 PVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP 164
P+SLVRDH KE L GI+V+S+N DLLYEPW++ D +G FTTF +WD+CL M +P
Sbjct: 1 PLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDP 60
Query: 165 -ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ 223
A +LPP R++ +G C E L EDESEK SNALL R WSPGWSNAD+ LT F+
Sbjct: 61 EAPLLPPKRII--SGDASRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFING 118
Query: 224 HLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
L+ Y KNR+K +TS LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV F
Sbjct: 119 PLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLF 178
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
L+++GLREYSRYL FN P++HERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRE
Sbjct: 179 LKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRE 238
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
LWATGW+H+RIRV+V+SF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPDG
Sbjct: 239 LWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDG 298
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNY 463
E +R+D+P+ +G KFDP GEYVR+WLPELAR+PT+WIHHPW+AP +VL+AAG+ELG NY
Sbjct: 299 REFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNY 358
Query: 464 PKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREK 523
P PI+ +D + RL +A+ +MW+ EAA A NGT E + D+S+ A PQ + E+
Sbjct: 359 PLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSSESAPI-AFPQDINMEE 417
Query: 524 STCPTISS--------NDQKVPSF 539
+ P ++ DQ VPS
Sbjct: 418 NHEPVRNNPPATNRRYEDQMVPSM 441
>gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata]
Length = 450
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/413 (62%), Positives = 324/413 (78%), Gaps = 16/413 (3%)
Query: 162 MEPASILPPWRLV---QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLT 218
+E + PPWRL+ A + CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L
Sbjct: 1 IESVMLPPPWRLMPITAVAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILN 60
Query: 219 EFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE 278
EF+E+ L+ Y KN +K+ GNSTSLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+E
Sbjct: 61 EFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEE 120
Query: 279 SVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVD 338
S FLR +GLREYSRY+CFNFPFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVD
Sbjct: 121 SADLFLRGIGLREYSRYICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVD 180
Query: 339 AGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISG 398
AGMRELWATGW+HNRIRVIVSSFAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISG
Sbjct: 181 AGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISG 240
Query: 399 SLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE 458
S+PDGHEL+RLD+P +QG+K+DPEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVE
Sbjct: 241 SIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVE 300
Query: 459 LGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQV 518
LG NY KPI+D+D RE L +AI + E + M +E+V D+ + ++ I
Sbjct: 301 LGTNYAKPIVDIDTARELLAKAISRTREAQ----IMIGVAPDEIVADSFEALEANTI--- 353
Query: 519 VLREKSTCPTISSNDQKVPS---FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+E CP++SSNDQ+VPS + K P + +++++ + + + +L+S
Sbjct: 354 --KEPGLCPSVSSNDQQVPSAVHYNGSKRVKPGEEEERDMKKSKGFDERDLFS 404
>gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
Length = 559
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 293/560 (52%), Positives = 383/560 (68%), Gaps = 28/560 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFRRDLR+EDNPAL AAA G V P++ WCP EEG+F PGR SRWWLKQSL +L S
Sbjct: 9 LVWFRRDLRVEDNPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSLIHLDAS 68
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLY-DPVSLVRDHSIKEKLVELGIS 124
L S G L+L K TL+ L+ A +T++ NHLY DP+++ RD +K++L+E GI
Sbjct: 69 LASYGCSLLLQKGNDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVKQRLLEYGIF 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP------ASILPPWR----LV 174
V ++N D L+EPWEIYDE+GHAFTTF +W++ L+ + EP + L P+R L+
Sbjct: 129 VHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARLFPYREYLDLI 188
Query: 175 QAAGTIDG-CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
AG + CSIE+L LEDESEKSSN LL R WSPG +A+ L F+ L Y +R+
Sbjct: 189 SFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVGPLNDYTTSRE 248
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
NSTS LSPYLHFGELS+RK++ C+ KQ +E+ F + + FLRA+GLREYS
Sbjct: 249 T-ADNSTSHLSPYLHFGELSIRKLYNCIRSKQR--DEEQLFCPRRNAHLFLRAIGLREYS 305
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
RY+ F+FPFT E+ LL N FPW D +FKAW+ G+TGYPLVDA MRELW+TGW+H +
Sbjct: 306 RYISFHFPFTQEQSLLKN---FPWRNDEIHFKAWKLGKTGYPLVDAAMRELWSTGWLHCK 362
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+RV+ SSF +K L LPW WG+KYFWDTLLDADLE DILGW+Y+SG L DGHEL+R+ P
Sbjct: 363 LRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHELDRVLDPH 422
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
+G K DP+GEYVR+WLPEL+R+P +WIHHP+ AP + L+AAGVELG NYPKPI+D+++
Sbjct: 423 EEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPKPIVDMEVA 482
Query: 474 RERLTQAIFKMWEMEAADNAMDS-NGTNEVVFDNSDRIQTPA--IPQVVLREKSTCPTIS 530
+ RL+QA+ M E + + A + G +E + + PA Q+V S T +
Sbjct: 483 KYRLSQAVKSMREKNSVEQAARTEEGQDETNPRPNSQHNFPAAFCDQLV---PSILTTSA 539
Query: 531 SNDQKVPSFQNGKN---NLP 547
S+ Q S GK+ NLP
Sbjct: 540 SHTQFSGSVTRGKHITSNLP 559
>gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
Length = 559
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/560 (52%), Positives = 382/560 (68%), Gaps = 28/560 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFRRDLR+EDNPAL AAA G V P++ WCP EEG+F PGR SRWWLKQSL +L S
Sbjct: 9 LVWFRRDLRVEDNPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSLIHLDAS 68
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLY-DPVSLVRDHSIKEKLVELGIS 124
L S G L+L K TL+ L+ A +T++ NHLY DP+++ RD +K++L+E GI
Sbjct: 69 LASYGCSLLLQKGNDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVKQRLLEYGIF 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP------ASILPPWR----LV 174
V ++N D L+EPWEIYDE+GHAFTTF +W++ L+ + EP + + P+R ++
Sbjct: 129 VHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARIFPYREYLDVI 188
Query: 175 QAAGTIDG-CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
AG + CSIE+L LEDESEKSSN LL R WSPG +A+ L F+ L Y +R+
Sbjct: 189 SFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVAPLNDYTTSRE 248
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
NSTS LSPYLHFGELS+RK++ C+ KQ +E+ F + + FLRA+GLREYS
Sbjct: 249 T-TDNSTSHLSPYLHFGELSIRKLYNCIRSKQR--DEEQLFCPRRNAHLFLRAIGLREYS 305
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
RY+ F+FPFT E+ LL N FPW D +FKAW+ G+TGYPLVDA MRELW+TGW+H +
Sbjct: 306 RYISFHFPFTQEQSLLKN---FPWSNDEIHFKAWKLGKTGYPLVDAAMRELWSTGWLHCK 362
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+RV+ SSF +K L LPW WG+KYFWDTLLDADLE DILGW+Y+SG L DGHEL+R+ P
Sbjct: 363 LRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHELDRVLDPH 422
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
+G K D +GEYVR+WLPEL+R+P +WIHHP+ AP + L+AAGVELG NYPKPI+D+++
Sbjct: 423 EEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPKPIVDMEVA 482
Query: 474 RERLTQAIFKMWEMEAADNAMDS-NGTNEVVFDNSDRIQTPA--IPQVVLREKSTCPTIS 530
+ RL+QA+ M E A + A + G +E + R PA Q+V S T +
Sbjct: 483 KYRLSQAVKSMREKNAVEQAARTEEGQDETNPRPNSRHNFPAAFCDQLV---PSILTTSA 539
Query: 531 SNDQKVPSFQNGKN---NLP 547
S+ Q S GK+ NLP
Sbjct: 540 SHTQFSGSVTRGKHITSNLP 559
>gi|343403484|dbj|BAK61556.1| cryptochrome1c, partial [Glycine soja]
gi|343403487|dbj|BAK61558.1| cryptochrome1c, partial [Glycine soja]
gi|343403490|dbj|BAK61560.1| cryptochrome1c, partial [Glycine soja]
gi|343403493|dbj|BAK61562.1| cryptochrome1c, partial [Glycine soja]
gi|343403505|dbj|BAK61570.1| cryptochrome1c, partial [Glycine soja]
Length = 547
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/493 (55%), Positives = 340/493 (68%), Gaps = 25/493 (5%)
Query: 106 VSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP- 164
+SLVRDH KE L GI+V+S+N DLLYEPW++ D G FTTF A+W++CL M +P
Sbjct: 1 LSLVRDHKAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQ 60
Query: 165 ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
A +LPP R++ G + C + L EDESEK+SNALL R WSPGWSNADK L FV
Sbjct: 61 APLLPPKRII--PGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGA 118
Query: 225 LLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFL 284
L+ Y KNR+K +TS LSP+LHFGE+SV+KVF + +KQ+ WA E N G+ESV FL
Sbjct: 119 LIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFL 178
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+++GLREYSRY+ FN P++HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMREL
Sbjct: 179 KSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMREL 238
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
WATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG
Sbjct: 239 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 298
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
E +R+D+P+ G K DP GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP
Sbjct: 299 EFDRIDNPQFVGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 358
Query: 465 KPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKS 524
PI+ +D RL +A+ +MW EAA A NGT E + D+S+ A PQ + E+
Sbjct: 359 LPIVGIDAAEVRLQEALIQMWRQEAASRAAMENGTEEGLGDSSESAPI-AFPQDIQMEER 417
Query: 525 TCP--------TISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSG 576
P T DQ VPS + VEEE D +N A +S
Sbjct: 418 PEPVRNNPPHGTRRYQDQMVPSITSSH---------VRVEEEETSSD----LRNSAADSR 464
Query: 577 AHDDFCSTAESSA 589
A T + +A
Sbjct: 465 AEVPINVTTQQNA 477
>gi|343403478|dbj|BAK61552.1| cryptochrome1c, partial [Glycine soja]
gi|343403481|dbj|BAK61554.1| cryptochrome1c, partial [Glycine soja]
gi|343403496|dbj|BAK61564.1| cryptochrome1c, partial [Glycine soja]
gi|343403499|dbj|BAK61566.1| cryptochrome1c, partial [Glycine soja]
gi|343403502|dbj|BAK61568.1| cryptochrome1c, partial [Glycine soja]
gi|343403508|dbj|BAK61572.1| cryptochrome1c, partial [Glycine soja]
gi|343403511|dbj|BAK61574.1| cryptochrome1c, partial [Glycine soja]
gi|343403514|dbj|BAK61576.1| cryptochrome1c, partial [Glycine soja]
Length = 547
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/493 (55%), Positives = 339/493 (68%), Gaps = 25/493 (5%)
Query: 106 VSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP- 164
+SLVRDH KE L GI+V+S+N DLLYEPW++ D G FTTF A+W++CL M +P
Sbjct: 1 LSLVRDHKAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQ 60
Query: 165 ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
A +LPP R++ G + C + L EDESEK+SNALL R WSPGWSNADK L FV
Sbjct: 61 APLLPPKRII--PGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGA 118
Query: 225 LLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFL 284
L+ Y KNR+K +TS LSP+LHFGE+SV+KVF + +KQ+ WA E N G+ESV FL
Sbjct: 119 LIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFL 178
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+++GLREYSRY+ FN P++HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMREL
Sbjct: 179 KSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMREL 238
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
WATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG
Sbjct: 239 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 298
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
E +R+D+P+ G K DP GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP
Sbjct: 299 EFDRIDNPQFVGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 358
Query: 465 KPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKS 524
PI+ +D RL +A+ +MW EAA A NGT E + D+S+ A PQ + E
Sbjct: 359 LPIVGIDAAEVRLQEALIQMWRQEAASRAAMENGTEEGLGDSSESAPI-AFPQDIQMEDR 417
Query: 525 TCP--------TISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSG 576
P T DQ VPS + VEEE D +N A +S
Sbjct: 418 PEPVRNNPPHGTRRYQDQMVPSITSSH---------VRVEEEETSSD----LRNSAADSR 464
Query: 577 AHDDFCSTAESSA 589
A T + +A
Sbjct: 465 AEVPINVTTQQNA 477
>gi|343403517|dbj|BAK61578.1| cryptochrome1d [Glycine soja]
gi|343403520|dbj|BAK61580.1| cryptochrome1d [Glycine soja]
gi|343403523|dbj|BAK61582.1| cryptochrome1d [Glycine soja]
gi|343403526|dbj|BAK61584.1| cryptochrome1d [Glycine soja]
gi|343403529|dbj|BAK61586.1| cryptochrome1d [Glycine soja]
gi|343403532|dbj|BAK61588.1| cryptochrome1d [Glycine soja]
gi|343403535|dbj|BAK61590.1| cryptochrome1d [Glycine soja]
Length = 486
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/491 (56%), Positives = 341/491 (69%), Gaps = 25/491 (5%)
Query: 108 LVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-AS 166
LVRDH KE L GI+V+S+N DLLYEPW++ D G FTTF A+W++CL M +P A
Sbjct: 1 LVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAP 60
Query: 167 ILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
+LPP R++ G + C + L EDE EK+SNALL R WSPGWSNADK LT FV L+
Sbjct: 61 LLPPKRII--PGDVSRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALI 118
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
Y KNR+K +TS LSP+LHFGE+SV+KVF + +KQ+ WA E N G+ESV FL++
Sbjct: 119 EYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKS 178
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+GLREYSRY+ FN P++HERPLL++LK+FPW + G FKAWRQGRTGYPLVDAGMRELWA
Sbjct: 179 IGLREYSRYISFNHPYSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWA 238
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISG+LPDG EL
Sbjct: 239 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREL 298
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
+R+D+P+ +G K DP GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP P
Sbjct: 299 DRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLP 358
Query: 467 IIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTC 526
I+ +D RL +A+ +MW+ EAA A NGT E + D+++ A PQ + E+
Sbjct: 359 IVGIDAAEVRLQEALIQMWQQEAASRAAMENGTEEGLGDSAESAPI-AFPQDIQMEERPE 417
Query: 527 P--------TISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAH 578
P T DQ VPS + VEEE D +N A +S A
Sbjct: 418 PVRNNLPHGTRRYQDQMVPSITSSH---------VRVEEEETSSD----LRNSAADSRAE 464
Query: 579 DDFCSTAESSA 589
T + A
Sbjct: 465 VPINVTTQQIA 475
>gi|413937403|gb|AFW71954.1| hypothetical protein ZEAMMB73_074626 [Zea mays]
Length = 600
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/446 (60%), Positives = 328/446 (73%), Gaps = 12/446 (2%)
Query: 104 DPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163
DP+SLVRD+ +KE+L GI VQS+N DLLYEPWE+ DE FT F +W++CL M
Sbjct: 19 DPLSLVRDYRVKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDP 78
Query: 164 PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ 223
A +LPP R+ +G + C ++L EDESE+ SNALL R WSPGW NADK LT F+
Sbjct: 79 AAPLLPPKRI--NSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNG 136
Query: 224 HLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
L+ Y NR+K STSLLSPYLHFGELSVRKVF + MKQ++W+ + N G+ES T F
Sbjct: 137 PLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLF 196
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
LR++GLREYSRYL FN P +HE+PLLS+L++FPW + FK WRQGRTGYPLVDAGMRE
Sbjct: 197 LRSIGLREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRE 256
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
LWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG
Sbjct: 257 LWATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 316
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNY 463
EL+R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NY
Sbjct: 317 RELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNY 376
Query: 464 PKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLR 521
P+PI++LD RL A+ +MWE+EAA A NG E + D++D I P ++ +
Sbjct: 377 PRPIVELDAANSRLQDALSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVD 436
Query: 522 EKSTCPTISS--------NDQKVPSF 539
+ P I + DQ VPS
Sbjct: 437 RQPVQPAIHAPGVTGRRREDQMVPSM 462
>gi|413937402|gb|AFW71953.1| hypothetical protein ZEAMMB73_074626 [Zea mays]
Length = 608
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/446 (60%), Positives = 328/446 (73%), Gaps = 12/446 (2%)
Query: 104 DPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163
DP+SLVRD+ +KE+L GI VQS+N DLLYEPWE+ DE FT F +W++CL M
Sbjct: 19 DPLSLVRDYRVKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDP 78
Query: 164 PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ 223
A +LPP R+ +G + C ++L EDESE+ SNALL R WSPGW NADK LT F+
Sbjct: 79 AAPLLPPKRI--NSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNG 136
Query: 224 HLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
L+ Y NR+K STSLLSPYLHFGELSVRKVF + MKQ++W+ + N G+ES T F
Sbjct: 137 PLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLF 196
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
LR++GLREYSRYL FN P +HE+PLLS+L++FPW + FK WRQGRTGYPLVDAGMRE
Sbjct: 197 LRSIGLREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRE 256
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
LWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG
Sbjct: 257 LWATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 316
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNY 463
EL+R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NY
Sbjct: 317 RELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNY 376
Query: 464 PKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLR 521
P+PI++LD RL A+ +MWE+EAA A NG E + D++D I P ++ +
Sbjct: 377 PRPIVELDAANSRLQDALSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVD 436
Query: 522 EKSTCPTISS--------NDQKVPSF 539
+ P I + DQ VPS
Sbjct: 437 RQPVQPAIHAPGVTGRRREDQMVPSM 462
>gi|410717580|gb|AFV79166.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAVRSQDDQLVPSISN 407
>gi|410717422|gb|AFV79087.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717424|gb|AFV79088.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717426|gb|AFV79089.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717432|gb|AFV79092.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717434|gb|AFV79093.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717436|gb|AFV79094.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717438|gb|AFV79095.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717440|gb|AFV79096.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717442|gb|AFV79097.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717444|gb|AFV79098.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717446|gb|AFV79099.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717448|gb|AFV79100.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717450|gb|AFV79101.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717452|gb|AFV79102.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717456|gb|AFV79104.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717460|gb|AFV79106.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717462|gb|AFV79107.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717464|gb|AFV79108.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717466|gb|AFV79109.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717470|gb|AFV79111.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717472|gb|AFV79112.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717474|gb|AFV79113.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717476|gb|AFV79114.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717478|gb|AFV79115.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717480|gb|AFV79116.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717482|gb|AFV79117.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717484|gb|AFV79118.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717486|gb|AFV79119.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717488|gb|AFV79120.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717490|gb|AFV79121.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717492|gb|AFV79122.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717494|gb|AFV79123.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717498|gb|AFV79125.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717500|gb|AFV79126.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717502|gb|AFV79127.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717504|gb|AFV79128.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717506|gb|AFV79129.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717508|gb|AFV79130.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717512|gb|AFV79132.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717516|gb|AFV79134.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717518|gb|AFV79135.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717522|gb|AFV79137.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717526|gb|AFV79139.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717528|gb|AFV79140.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717530|gb|AFV79141.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717532|gb|AFV79142.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717534|gb|AFV79143.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717536|gb|AFV79144.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717538|gb|AFV79145.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717542|gb|AFV79147.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717544|gb|AFV79148.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717546|gb|AFV79149.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717548|gb|AFV79150.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717550|gb|AFV79151.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717552|gb|AFV79152.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717554|gb|AFV79153.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717556|gb|AFV79154.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717558|gb|AFV79155.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717560|gb|AFV79156.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717562|gb|AFV79157.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717564|gb|AFV79158.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717566|gb|AFV79159.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717568|gb|AFV79160.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717570|gb|AFV79161.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717574|gb|AFV79163.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717576|gb|AFV79164.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717578|gb|AFV79165.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717582|gb|AFV79167.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717584|gb|AFV79168.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717588|gb|AFV79170.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717590|gb|AFV79171.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717592|gb|AFV79172.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717594|gb|AFV79173.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717596|gb|AFV79174.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717598|gb|AFV79175.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717600|gb|AFV79176.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717602|gb|AFV79177.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717604|gb|AFV79178.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717606|gb|AFV79179.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717608|gb|AFV79180.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717612|gb|AFV79182.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717614|gb|AFV79183.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717616|gb|AFV79184.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717618|gb|AFV79185.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717620|gb|AFV79186.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717622|gb|AFV79187.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717624|gb|AFV79188.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717626|gb|AFV79189.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717628|gb|AFV79190.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717630|gb|AFV79191.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717632|gb|AFV79192.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717634|gb|AFV79193.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717636|gb|AFV79194.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717638|gb|AFV79195.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717640|gb|AFV79196.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717642|gb|AFV79197.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717644|gb|AFV79198.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717646|gb|AFV79199.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717648|gb|AFV79200.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717650|gb|AFV79201.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717652|gb|AFV79202.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717654|gb|AFV79203.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410717572|gb|AFV79162.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410717428|gb|AFV79090.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717510|gb|AFV79131.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717514|gb|AFV79133.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410717420|gb|AFV79086.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717458|gb|AFV79105.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717468|gb|AFV79110.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717520|gb|AFV79136.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410717496|gb|AFV79124.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
+ DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 VNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410717430|gb|AFV79091.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717454|gb|AFV79103.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
+ DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 VNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHIVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410718356|gb|AFV79555.1| cryptochrome 1, partial [Pinus pinaster]
Length = 572
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/409 (62%), Positives = 310/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
+ DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 VNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++QILWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQILWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPCSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410717540|gb|AFV79146.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/409 (62%), Positives = 309/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTTFINGPLLXXXLNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|410717586|gb|AFV79169.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/409 (62%), Positives = 309/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
+ ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 XHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|224032111|gb|ACN35131.1| unknown [Zea mays]
gi|413953891|gb|AFW86540.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 495
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 256/451 (56%), Positives = 323/451 (71%), Gaps = 19/451 (4%)
Query: 158 LQMQMEPASILPPWRLVQAAG--TIDGCSIEDLGLEDESE-KSSNALLGRGWSPGWSNAD 214
+ + +E + L P RLV A G + CSI+DLGLE + +SSNALL R WSPGW NA+
Sbjct: 1 MSLPIEISQYLAPTRLVAAPGLANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAE 60
Query: 215 KVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF 274
+L EFV LL Y ++ K+GG++TSLLSPYLHFGELSVR ++Q + M+Q+ W E
Sbjct: 61 NMLEEFVSYGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKS 120
Query: 275 EGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGY 334
E +ESV FLR++G REYSRYLCFN+PFTHER L NLK++PW D G FK+WRQG TGY
Sbjct: 121 EAEESVRLFLRSIGFREYSRYLCFNYPFTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGY 180
Query: 335 PLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQ 394
PLVDAGMRELWATGW HNRIRVIVSSFAVK L +PW WGMKYFWD LLDADLE DILGWQ
Sbjct: 181 PLVDAGMRELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQ 240
Query: 395 YISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKA 454
YISGSLPDGHEL RLD+PE+QG K+DP+GEYVR W+PELARMPTEWIH PW AP ++L+
Sbjct: 241 YISGSLPDGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQV 300
Query: 455 AGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPA 514
AGVELG NYPKPI++L + RE L AI MW+++ A + +G EVV DN + I+
Sbjct: 301 AGVELGFNYPKPIVELHMARECLDDAISTMWQLDTAAKLAELDG--EVVDDNLNNIRNFD 358
Query: 515 IPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYS--CKNEA 572
IP+VVL +K P+ SS + +V S NGK+ + +P V+ LY +++
Sbjct: 359 IPKVVLNKK-LSPSTSSMEHRVLS-TNGKDE---KSQPTEVK-------ALYKQIIRDDM 406
Query: 573 GNSGAHDDFCSTAESSAAKRQTTTNISFSVP 603
N DD CSTA +++++++ +F+VP
Sbjct: 407 MNDSNMDDTCSTANLKVTRKRSSSDSAFNVP 437
>gi|410717610|gb|AFV79181.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/409 (61%), Positives = 308/409 (75%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+ AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSXXQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LHFGELSVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group]
Length = 568
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/433 (60%), Positives = 323/433 (74%), Gaps = 12/433 (2%)
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTI 180
GI VQS+N DLLYEPWE+ D+ G +FT F +W++CL M +PA+ +LPP R+ +G +
Sbjct: 6 GIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRI--NSGDL 63
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C +DL ED+SE+ SNALL R WSPGW N DK LT F+ L+ Y NR+K ST
Sbjct: 64 SMCPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADSAST 123
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL FN
Sbjct: 124 SLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNH 183
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P +HE+PLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 184 PCSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 243
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG EL+R+D+P+++G KFD
Sbjct: 244 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 303
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI+ LD RL +A
Sbjct: 304 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDRANARLQEA 363
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQV-VLRE--KSTCPTISS---- 531
+ +MW++EAA A NG E + D+S+ I+ P Q+ V RE + T +++
Sbjct: 364 LSEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRR 423
Query: 532 NDQKVPSFQNGKN 544
DQ VP+ + N
Sbjct: 424 EDQMVPTMTSSLN 436
>gi|410717524|gb|AFV79138.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/409 (61%), Positives = 306/409 (74%), Gaps = 8/409 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I DE GHAF+TF AYW+KCL M +P A +LPP R+V AG + C +DL LEDESEK+
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIV--AGEVSNCPSDDLKLEDESEKA 58
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
SNALL R WSPGWS+ADK LT F+ LL Y NRQK +TSLLSP+LH SVRKV
Sbjct: 59 SNALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHXXXXSVRKV 118
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW 317
F + ++Q+LWA E N G++SV FL+++GLREYSRYL FNFP +HERPLLS+L YFPW
Sbjct: 119 FHLVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPW 178
Query: 318 HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF 377
D FK+WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYF
Sbjct: 179 RVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 238
Query: 378 WDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
WDTLLDADLECD LGWQYISG LPDG E++R+D+P+ +G KFDP GEYVR+WLPELAR+P
Sbjct: 239 WDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLP 298
Query: 438 TEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSN 497
T+WIHHPWDAP VL++AGVELG NYP PI+++ +ERL A+ +MW+ EAA A N
Sbjct: 299 TQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLEN 358
Query: 498 GTNEVVFD-----NSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQN 541
GT E + + N+ + + + +R+ + S +DQ VPS N
Sbjct: 359 GTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISN 407
>gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 583
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/440 (57%), Positives = 317/440 (72%), Gaps = 14/440 (3%)
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQA 176
L GI VQS+N DLLY+PWE+ D+ G F F +W++CL M +P A +LPP R+
Sbjct: 2 LTSEGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRI--N 59
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+G + C +DL EDESE+ SNALL R WSPGW NADK L+ F+ L+ Y NR+K
Sbjct: 60 SGDLSMCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKAD 119
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+TSLLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYL
Sbjct: 120 SANTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYL 179
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
CFN P +HE+PLL++L++FPW D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV
Sbjct: 180 CFNHPCSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRV 239
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPD EL+ +D+P+++G
Sbjct: 240 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEG 299
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI++LD + R
Sbjct: 300 YKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVR 359
Query: 477 LTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLRE-----KSTCPTISS 531
L +A+ +MW++EAA A G E + D+S+ + PQ + E P + +
Sbjct: 360 LQEALSEMWQLEAASRAAMDTGMEEGLGDSSE-VPPIEFPQDLQMEVHWEPARVAPNVLT 418
Query: 532 N-----DQKVPSFQNGKNNL 546
DQ VP+ N +
Sbjct: 419 TAQRRQDQMVPTMTTSLNRV 438
>gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group]
Length = 433
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/396 (59%), Positives = 283/396 (71%), Gaps = 13/396 (3%)
Query: 215 KVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF 274
K+L EFV LL Y K+ K+ G +TSLLSPYLHFGE+SVRKV+Q + M+QI W E
Sbjct: 1 KMLEEFVSHGLLEYSKHGMKVEGATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTS 60
Query: 275 EGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGY 334
E +ES+ FF+R++GLREYSRYLCFNFPFTHE+ LL NLK++PW D FK+WRQG TGY
Sbjct: 61 EAEESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGY 120
Query: 335 PLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQ 394
PLVDAGMRELWATGW HNRIRVI+SSFAVK LL+PW WGMKYFWD LLDADLE DILGWQ
Sbjct: 121 PLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQ 180
Query: 395 YISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKA 454
YISGSLPDGHEL RLD+PE+QG K+DP+G YVR W+PELARMPTEWIHHPWDAP +L+
Sbjct: 181 YISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEV 240
Query: 455 AGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPA 514
AGVELG NYPKPI+DL + RE L +I MW+++ A+ + +G EVV DN I+T
Sbjct: 241 AGVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEKLAELDG--EVVEDNLSNIKTFD 298
Query: 515 IPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGN 574
IP+VVLRE S C DQ+VP + +NL S K K D + S K EA +
Sbjct: 299 IPKVVLRETSPCAL--PIDQRVPHASSKDHNLKS-KVLKASNRSSICVDMIRSSKMEATS 355
Query: 575 SGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSLSE 610
S A S +++++ +F VP S +E
Sbjct: 356 --------SVANSPVSRKRSFCETAFHVPSYSSSAE 383
>gi|384248949|gb|EIE22432.1| hypothetical protein COCSUDRAFT_1729, partial [Coccomyxa
subellipsoidea C-169]
Length = 469
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/471 (50%), Positives = 311/471 (66%), Gaps = 11/471 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
++WFRRDLR+ DNPAL AA + + PVY W P+EEGQF PGR SRWWL QSL L + L
Sbjct: 1 LLWFRRDLRVSDNPALIAAVQAATTVPVYVWAPEEEGQFQPGRCSRWWLHQSLKALEKDL 60
Query: 67 KSLGAELVLFKTESTLAALLECI-----SAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
++LG +V ++ + AL++ + A + V FNHLYDP+SLVRD+ +K + L
Sbjct: 61 QALGTSMVYRRSPESRIALIQLVEETGAQASPSPAVFFNHLYDPISLVRDNEVKAAMQGL 120
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG-TI 180
+ QS+NGDLLYEPWE+ E G T+F ++W + M P LP + A I
Sbjct: 121 SVHCQSFNGDLLYEPWEVLAEGGRPVTSFASFWSRVQNMPYPPPIPLPVPAAISAVPPEI 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
G ++ LGL E+ SNA L W+PG A +L +FV + L + +R K ST
Sbjct: 181 VGLELDSLGLMSPEEQQSNAQLYHCWAPGGKGAHALLEKFVRERLRTFSAHRSKTDREST 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP++H+GE+S R ++ + L A E +S F+R MG REY+RYL F+F
Sbjct: 241 STLSPHVHYGEISNRHIYYVKRQEAKLGAMAG--EWHDSTADFVRQMGYREYARYLSFHF 298
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKA---WRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
PFTHER LL +L+ PW+ D +FKA WRQGRTGYPLVDAGMR+LW++GW+HNRIRV+
Sbjct: 299 PFTHERSLLEHLRAAPWNFDQRHFKACPAWRQGRTGYPLVDAGMRQLWSSGWVHNRIRVV 358
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LLLPW+WG+K++WD LLDADLEC LGWQYISG L D H + + +
Sbjct: 359 CASFLVKNLLLPWQWGLKHYWDALLDADLECAALGWQYISGCLADAHPFSYMLDHKKESL 418
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
+FDPEG+YVR+WLP LAR+P ++IH PW+AP +VL+ AGVELG NYP PII
Sbjct: 419 RFDPEGKYVRRWLPVLARVPVKYIHRPWEAPEHVLEDAGVELGSNYPYPII 469
>gi|343403430|dbj|BAK61520.1| cryptochrome1a [Glycine soja]
gi|343403433|dbj|BAK61522.1| cryptochrome1a [Glycine soja]
gi|343403439|dbj|BAK61526.1| cryptochrome1a [Glycine soja]
gi|343403442|dbj|BAK61528.1| cryptochrome1a [Glycine soja]
gi|343403445|dbj|BAK61530.1| cryptochrome1a [Glycine soja]
gi|343403448|dbj|BAK61532.1| cryptochrome1a [Glycine soja]
gi|343403454|dbj|BAK61536.1| cryptochrome1a [Glycine soja]
Length = 471
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/365 (62%), Positives = 281/365 (76%), Gaps = 9/365 (2%)
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
C + L EDE EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +TSL
Sbjct: 5 CPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSL 64
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGELSV+KVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN P+
Sbjct: 65 LSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPY 124
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 125 SHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 184
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG E++R+D+P+ +G KFDP
Sbjct: 185 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPN 244
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+
Sbjct: 245 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEALS 304
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQ 534
+MW+ EAA A NGT E + D+S+ + A PQ + E++ P ++ DQ
Sbjct: 305 EMWQQEAASRAAMENGTEEGLGDSSESVPA-AFPQDMQMEETHEPVRNNPLPVARRYQDQ 363
Query: 535 KVPSF 539
VPS
Sbjct: 364 MVPSI 368
>gi|343403451|dbj|BAK61534.1| cryptochrome1a [Glycine soja]
Length = 471
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/365 (62%), Positives = 281/365 (76%), Gaps = 9/365 (2%)
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
C + L EDE EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +TSL
Sbjct: 5 CPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSL 64
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGELSV+KVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN P+
Sbjct: 65 LSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPY 124
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 125 SHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 184
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG E++R+D+P+ +G KFDP
Sbjct: 185 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPN 244
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+
Sbjct: 245 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEALS 304
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQ 534
+MW+ EAA A NGT E + D+S+ + A PQ + E++ P ++ DQ
Sbjct: 305 EMWQQEAASRAAMENGTEEGLGDSSESVPA-AFPQDMQMEETHEPVRNNPLPVARRYQDQ 363
Query: 535 KVPSF 539
VPS
Sbjct: 364 MVPSI 368
>gi|343403436|dbj|BAK61524.1| cryptochrome1a [Glycine soja]
Length = 471
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/365 (62%), Positives = 281/365 (76%), Gaps = 9/365 (2%)
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
C + L EDE EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +TSL
Sbjct: 5 CPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSL 64
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGELSV+KVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN P+
Sbjct: 65 LSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPY 124
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+HERPLL +LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 125 SHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 184
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG E++R+D+P+ +G KFDP
Sbjct: 185 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPN 244
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ +D + RL +A+
Sbjct: 245 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEALS 304
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISS--------NDQ 534
+MW+ EAA A NGT E + D+S+ + A PQ + E++ P ++ DQ
Sbjct: 305 EMWQQEAASRAAMENGTEEGLGDSSESVPA-AFPQDMQMEETHEPVRNNPLPVARRYEDQ 363
Query: 535 KVPSF 539
VPS
Sbjct: 364 MVPSI 368
>gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii]
Length = 1008
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/497 (45%), Positives = 313/497 (62%), Gaps = 6/497 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA PV+ W P+EEGQF PGR SRWW K SL L Q
Sbjct: 8 AVVWFRRDLRVDDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG+ LV+ ++ + AALL+ ++ + A V FNHLYDP+SL+RDH K L G++
Sbjct: 68 ALAALGSRLVIRRSTDSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAAGVA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA-SILPPWRLVQAAGTIDGC 183
+++NGD+LYEPW++ D ++TFD +W+ M + P + P + +
Sbjct: 128 HRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVPAAVPSM 187
Query: 184 SIEDLG--LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ ++ E E SS+ L + W PG A L F+ + L + +R K+ +STS
Sbjct: 188 TVAEVDWFFTPEQEASSDQLKFK-WKPGVGGAISELEHFLAERLTEFEHDRAKVDRDSTS 246
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP++H G +SVR +F + Q W + +S FL+ MG REYSRYL F+FP
Sbjct: 247 RLSPWIHIGSISVRYIFYRVRQCQAEWLAA-GTDRAQSCDDFLQQMGYREYSRYLAFHFP 305
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
F HER LL +L+ PW D FKAWRQG+TGYP+VDA MR+LW++GW HNR RV+ +SF
Sbjct: 306 FIHERSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRVVAASF 365
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LLLPW+WG+K++WD +DADLECD LGWQY+SG + D H + E + +FDP
Sbjct: 366 LVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRFDP 425
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+GEYVR+WLP L+R+PTE+IH PW AP +VL AA VELG NYP PII + + A
Sbjct: 426 DGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITRSDAKANVDYAC 485
Query: 482 FKMWEMEAADNAMDSNG 498
+ + A +S+G
Sbjct: 486 GVLEKSAVAPTGSESSG 502
>gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 1008
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/497 (45%), Positives = 313/497 (62%), Gaps = 6/497 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA PV+ W P+EEGQF PGR SRWW K SL L Q
Sbjct: 8 AVVWFRRDLRVDDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG+ LV+ ++ + AALL+ ++ + A V FNHLYDP+SL+RDH K L G++
Sbjct: 68 ALAALGSRLVIRRSTDSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAAGVA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA-SILPPWRLVQAAGTIDGC 183
+++NGD+LYEPW++ D ++TFD +W+ M + P + P + +
Sbjct: 128 HRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVPAAVPSM 187
Query: 184 SIEDLG--LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ ++ E E SS+ L + W PG A L F+ + L + +R K+ +STS
Sbjct: 188 TVAEVDWFFTPEQEASSDQLKFK-WKPGVGGAISELEHFLAERLTEFEHDRAKVDRDSTS 246
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP++H G +SVR +F + Q W + +S FL+ MG REYSRYL F+FP
Sbjct: 247 RLSPWIHIGSISVRYIFYRVRQCQAEWLAA-GTDRAQSCDDFLQQMGYREYSRYLAFHFP 305
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
F HER LL +L+ PW D FKAWRQG+TGYP+VDA MR+LW++GW HNR RV+ +SF
Sbjct: 306 FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRVVAASF 365
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LLLPW+WG+K++WD +DADLECD LGWQY+SG + D H + E + +FDP
Sbjct: 366 LVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRFDP 425
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+GEYVR+WLP L+R+PTE+IH PW AP +VL AA VELG NYP PII + + A
Sbjct: 426 DGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITRSDAKANVDYAC 485
Query: 482 FKMWEMEAADNAMDSNG 498
+ + A +S+G
Sbjct: 486 GVLEKSAVAPTGSESSG 502
>gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group]
Length = 681
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/387 (59%), Positives = 277/387 (71%), Gaps = 10/387 (2%)
Query: 165 ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
++LPP R+ C ++L EDESE+ SNALL R WSPGW NADK L F+
Sbjct: 181 GALLPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGP 240
Query: 225 LLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFL 284
L+ Y NR+K STSLLSPYLHFGELSVRKVF + MKQ++W+ E N G ES FL
Sbjct: 241 LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFL 300
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
R++GLREYSRYL FN P + E+PLL++L++FPW D FK WRQGRTGYPLVDAGMR+
Sbjct: 301 RSIGLREYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRDS 360
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
ATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLD DLE D LGWQYISGSLPDG
Sbjct: 361 RATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDGDLESDRLGWQYISGSLPDGR 420
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
EL+R+D+P+++G KFDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAG+ELG NYP
Sbjct: 421 ELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP 480
Query: 465 KPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSD--RIQTPAIPQVVLRE 522
PI++LD + RL A+ +MWE+EAA A NG E + D+SD I P Q+ +
Sbjct: 481 LPIVELDAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDR 540
Query: 523 KSTCPTISS--------NDQKVPSFQN 541
PT+ DQ VPS +
Sbjct: 541 APAQPTVHGPTTAGRRREDQMVPSMTS 567
>gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
nagariensis]
gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
nagariensis]
Length = 914
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/473 (47%), Positives = 303/473 (64%), Gaps = 6/473 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA +V PV+ W P+EEGQF PGR SRWW K SL L Q
Sbjct: 16 AVVWFRRDLRVDDNPALEAALNAAATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDLQQ 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG+ L++ ++ + A LL+ + ++A V FNHLYDP+SL+RDH K L G++
Sbjct: 76 ALAALGSRLIIRRSTDSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLAAAGVA 135
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAAGTIDGC 183
+++NGD+LYEPWE+ D ++TFD +W+ M P + P + +
Sbjct: 136 HRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPAFVPSL 195
Query: 184 SIEDLG--LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+ ++ E E SS+ L + W PG A L FV + L + +R K+ +STS
Sbjct: 196 MVSEVDWFFTAEQEASSDQLKFK-WKPGVGGAIAELERFVTERLHVFEHDRAKVDRDSTS 254
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP++H G +SVR +F + Q W + S FL+ +G REYSRYL F+FP
Sbjct: 255 RLSPWIHIGSISVRYIFYRIRQCQAEWLAA-GVDRTRSCDDFLQQVGYREYSRYLSFHFP 313
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
F HER LL +L+ PW D FKAWRQG+TGYP+VDA MR+LW++GW HNR RV+ +SF
Sbjct: 314 FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVVAASF 373
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LLLPW+WG+K++WD +DADLECD LGWQY+SG + D H + E + +FDP
Sbjct: 374 LVKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRFDP 433
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
+GEYVR+WLP L+R+PTE+IH PW APP VL AA VELG NYP PII + R
Sbjct: 434 DGEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDAR 486
>gi|343403456|dbj|BAK61537.1| cryptochrome1b [Glycine soja]
gi|343403459|dbj|BAK61539.1| cryptochrome1b [Glycine soja]
gi|343403462|dbj|BAK61541.1| cryptochrome1b [Glycine soja]
gi|343403465|dbj|BAK61543.1| cryptochrome1b [Glycine soja]
gi|343403468|dbj|BAK61545.1| cryptochrome1b [Glycine soja]
gi|343403471|dbj|BAK61547.1| cryptochrome1b [Glycine soja]
gi|343403474|dbj|BAK61549.1| cryptochrome1b [Glycine soja]
Length = 345
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/347 (59%), Positives = 263/347 (75%), Gaps = 3/347 (0%)
Query: 13 DLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAE 72
DLRIEDNPAL A R G+V V+ W P+EEGQ+YPGRVSRWWLK SL++L SL++LG
Sbjct: 1 DLRIEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTP 60
Query: 73 LVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDL 132
L+ ++ TL++L E + + AT++ FNHLYDP+SLVRDH KE L GI+V+S+N DL
Sbjct: 61 LITKRSTDTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNADL 120
Query: 133 LYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSIEDLGLE 191
LYEPW++ D G FTTF A+W++CL M +P S +LPP R++ G C + L E
Sbjct: 121 LYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRII--PGDASRCPSDTLLFE 178
Query: 192 DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGE 251
DE EK+SNALL R WSPGWSNA+K LT F+ L+ Y KNR+K +TSLLSP+LHFGE
Sbjct: 179 DELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGE 238
Query: 252 LSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSN 311
LSV+KVF + +KQ+LWA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +
Sbjct: 239 LSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGH 298
Query: 312 LKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
LK+FPW + G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 299 LKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 345
>gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula]
Length = 308
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/310 (63%), Positives = 241/310 (77%), Gaps = 3/310 (0%)
Query: 105 PVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP 164
P+SLVRDH KE L GI+V+S+N DLLYEPW++ D +G FTTFD +W++CL M +P
Sbjct: 1 PLSLVRDHRAKEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDP 60
Query: 165 -ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ 223
A +LPP R++ +G + C L EDESEK SNALL R WSPGWSNAD+ LT F+
Sbjct: 61 EAPLLPPKRII--SGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFING 118
Query: 224 HLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
L+ Y NR+K +TS LSP+LHFGE+SVRKVF + +KQ+LWA E N G+ESV F
Sbjct: 119 PLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLF 178
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
++++GLREYSRYL FN P+THERPLL +LK+FPW D G FKAWRQGRTGYPLVDAGMRE
Sbjct: 179 IKSIGLREYSRYLSFNHPYTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRE 238
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
LWA GW+H+RIRV+V+SF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD
Sbjct: 239 LWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDC 298
Query: 404 HELERLDSPE 413
E +R+D+P+
Sbjct: 299 REFDRIDNPQ 308
>gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula]
Length = 234
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/235 (83%), Positives = 216/235 (91%), Gaps = 1/235 (0%)
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
T+ CS+E+LGLEDE+EKSSN+LLGRGWSPGWSNADK LTEF EQHL+ Y ++R K+G
Sbjct: 1 TVMKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVG-T 59
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STSLLSPYLHFGELSVRKVFQC+ +KQ+LWAKEEN GKESVT FLR++GLREYSRYLCF
Sbjct: 60 STSLLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCF 119
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
NFPFTHER LLSNLKYFPW+ + +FKAWRQGRTGYPLVDAGMRELWATGWIHN+IRVIV
Sbjct: 120 NFPFTHERSLLSNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIV 179
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
SSFAVKVLLLPWRWGMKYFWDTLLDADLE DILGWQYISGSLPD HELERLD+PE
Sbjct: 180 SSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPE 234
>gi|223944515|gb|ACN26341.1| unknown [Zea mays]
gi|413937404|gb|AFW71955.1| hypothetical protein ZEAMMB73_074626 [Zea mays]
Length = 470
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/324 (62%), Positives = 246/324 (75%), Gaps = 10/324 (3%)
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
+ Y NR+K STSLLSPYLHFGELSVRKVF + MKQ++W+ + N G+ES T FLR
Sbjct: 1 MDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLR 60
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
++GLREYSRYL FN P +HE+PLLS+L++FPW + FK WRQGRTGYPLVDAGMRELW
Sbjct: 61 SIGLREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELW 120
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
ATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPDG E
Sbjct: 121 ATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE 180
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
L+R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP+
Sbjct: 181 LDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPR 240
Query: 466 PIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDR--IQTPAIPQVVLREK 523
PI++LD RL A+ +MWE+EAA A NG E + D++D I P ++ + +
Sbjct: 241 PIVELDAANSRLQDALSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVDRQ 300
Query: 524 STCPTISS--------NDQKVPSF 539
P I + DQ VPS
Sbjct: 301 PVQPAIHAPGVTGRRREDQMVPSM 324
>gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group]
Length = 298
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/296 (63%), Positives = 235/296 (79%), Gaps = 3/296 (1%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G RT+VWFRRDLRI+DNPALA+AARDG+V PV+ WCP +EGQFYPGR SRWWLKQSL +
Sbjct: 3 GSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPH 62
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L QSL+SLG LVL + ESTL ALL CI ++ AT++V+NHLYDPVSLVRD IK++L L
Sbjct: 63 LSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSAL 122
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG--T 179
GIS+QS+NGDLLYEPWEIYD+ G AFTTF+ YW+KC+++ ++ + L PW+LV G +
Sbjct: 123 GISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLES 182
Query: 180 IDGCSIEDLGLE-DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ CS++DLGLE + E+SSNALL R WSPGW NA+K+L EFV LL Y K+ K+ G
Sbjct: 183 VRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEGA 242
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+TSLLSPYLHFGE+SVRKV+Q + M+QI W E E +ES+ FF+R++GLREYSR
Sbjct: 243 TTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSR 298
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/469 (44%), Positives = 287/469 (61%), Gaps = 13/469 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVW R+DLRIED+PAL AAA+ GSV P+Y W P+EEG + G S+WWL SL L
Sbjct: 5 TIVWMRQDLRIEDHPALDAAAQRGSVIPLYIWSPQEEGHWPLGGASKWWLHHSLKSLEND 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+SLG L++ K +S L L + I A V ++ Y+P ++ RD +K KL E G+
Sbjct: 65 LRSLGLPLIIRKGKS-LDCLRDVIKETNADAVFWSRRYEPYAIKRDIQVKSKLSEEGLLA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G++LYEPW I +++G F F +W CL + A + P + +D I
Sbjct: 124 KSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAKEQPLAPLSAPIGVKGKIVEVDSLHI 183
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
EDL L + S + + W PG A + L+ F+E Y + R + S LSP
Sbjct: 184 EDLKLLPTT--SWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLPGVSRLSP 241
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
YLHFGE+SVR V+ + K+ F+ E +LR +G R+++ +L ++FP T E
Sbjct: 242 YLHFGEISVRMVWDEI-------VKKLGFQEAEP---YLRQLGWRDFAYHLLYHFPKTPE 291
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
PL YFPW + K W++G TGYP VDAGMR+LW TGW+HNR R++V SF VK
Sbjct: 292 EPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFLVKD 351
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LLLPW+ G ++FWDTL+DADL + LGWQ+++GS D R+ +P QG KFDPEG Y
Sbjct: 352 LLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDPEGSY 411
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
VR+W+PE+A +P +WIH PW+AP +VL+ AGV+LG YP PI++ D R
Sbjct: 412 VRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEAR 460
>gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
Length = 462
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 240/318 (75%), Gaps = 11/318 (3%)
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSPYLHFGELSVRKVF + MKQ++W+ E N +ES T FLR++GLREYSRYLCF
Sbjct: 1 NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCF 60
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
N P +HE+PLL++L++FPW D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 61 NHPCSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 120
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYISGSLPD EL+ +D+P+++G K
Sbjct: 121 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYK 180
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP GEYVR+WLPELAR+PTEWIHHPWDAP +VL+AAGVELG NYP PI++LD + RL
Sbjct: 181 FDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQ 240
Query: 479 QAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLRE-----KSTCPTISSN- 532
+A+ +MW++EAA A G E + D+S+ + PQ + E P + +
Sbjct: 241 EALSEMWQLEAASRAAMDTGMEEGLGDSSE-VPPIEFPQDLQMEVHWEPARVAPNVLTTA 299
Query: 533 ----DQKVPSFQNGKNNL 546
DQ VP+ N +
Sbjct: 300 QRRQDQMVPTMTTSLNRV 317
>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 483
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 294/485 (60%), Gaps = 13/485 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+T++WFRRDLR+ DNPALA A DG V PVY P+EEG + PG S WWL SL+ LG+
Sbjct: 2 KTLLWFRRDLRLTDNPALARALEDGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLAALGE 61
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G +LV+ + ++L L I A +V++N LY+P + RD IK++L + GI
Sbjct: 62 DLRARGVDLVI-RQGASLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRDQGIR 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGC 183
QS+N LL+EPW + + G + F +W CL + + P + P P R+ A G
Sbjct: 121 TQSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGV-PVDVTPAPERIQGPAQLPPGE 179
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+++ LGL + + ++ W PG + A L EF+++ + Y + R + + +S L
Sbjct: 180 TLKSLGLLPDIDWAAG--FTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDGSSRL 237
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYLHFGE+ R+ Q+ + + + FLR +G RE++ +L ++FP T
Sbjct: 238 SPYLHFGEIGPRQAAAAC---QVAKDRHGGKAAHQGIDSFLREIGWREFAHHLLYHFPRT 294
Query: 304 HERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ PL + PW D +AW++GRTG PLVDA MR LWATGW+HNR+R+IV+S
Sbjct: 295 SDEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVRMIVASLL 354
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K L W G ++FWDTL+DADL + LGWQ+ +G D R+ +P +QG +FDP
Sbjct: 355 TKNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDPN 414
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
G+Y+RQW+PELA++P ++IH PW+AP +LKAAGV LG NYP+PI+DL R +
Sbjct: 415 GDYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIVDLAESRRQ----AL 470
Query: 483 KMWEM 487
+MWE+
Sbjct: 471 EMWEV 475
>gi|46446306|ref|YP_007671.1| photolyase [Candidatus Protochlamydia amoebophila UWE25]
gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
Length = 471
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/483 (42%), Positives = 293/483 (60%), Gaps = 16/483 (3%)
Query: 4 NRTIVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
N +IVWFR+D R+EDNPAL AA + G V PV+ W E ++ G S+WWL SL L
Sbjct: 3 NPSIVWFRQDFRLEDNPALNAATQKGGPVIPVFNWVFNPEKEWQLGGASQWWLYYSLISL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L LG L++ K E L +LLE A V +N Y+P+ + D IK +L + G
Sbjct: 63 KNDLSELGLSLIIRK-EDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTELQKQG 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTID 181
I S+NG+LL+EPW I +++G F F +W++CL++ +P LP P L + G +
Sbjct: 122 IKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLN-DPEVPLPVPHSLKKFVGQLQ 180
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
SI+ L L + + L WSPG +A +L + + + +Y R + TS
Sbjct: 181 TESIDSLNLLPKIKWDKG--LKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHDGTS 238
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGE+S R ++Q + +EN K +LR +G RE++ +L ++FP
Sbjct: 239 LLSPYLHFGEISPRMIWQAV---------KENSTSK-GAEGYLRQIGWREFAHHLLYHFP 288
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
T ++PL S F W D N KAW++G+TGYP++DAGMR+LW GW+HNR+R+IV SF
Sbjct: 289 ETPQKPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSF 348
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK L++ W G K+FWDTL+DADL + +GWQ+I+G D R+ +P QG KFDP
Sbjct: 349 LVKDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDP 408
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EG YV++W+PEL +P EW+H PW+AP +L+ +G+ELG+NYPKPI++ RE QA
Sbjct: 409 EGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQAY 468
Query: 482 FKM 484
++
Sbjct: 469 SRL 471
>gi|212721834|ref|NP_001132651.1| uncharacterized protein LOC100194126 [Zea mays]
gi|194694998|gb|ACF81583.1| unknown [Zea mays]
Length = 428
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/332 (55%), Positives = 236/332 (71%), Gaps = 13/332 (3%)
Query: 263 MKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLG 322
MKQ++W+ E N +ES T FLR++GLREYSRYL FN P +HERPLL++L++FPW D
Sbjct: 1 MKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPSSHERPLLAHLRFFPWVVDES 60
Query: 323 NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLL 382
FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+V+SF VKVL LPWRWGMKYFWDTLL
Sbjct: 61 YFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLL 120
Query: 383 DADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIH 442
DADLE D LGWQYI+GSLPDG EL+R+D+P+ +G KFDP GEYVR+W+PELAR+PTEWIH
Sbjct: 121 DADLESDALGWQYITGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIH 180
Query: 443 HPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEV 502
HPWDAP +VL+AAG+ELG NYP PI++LD + RL A+ +MW++EAA A +NGT E
Sbjct: 181 HPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGRLQAALSEMWQLEAASRATMNNGTEEG 240
Query: 503 VFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEERQYP 562
+ D+S+ + + V R+ + ++ VP +P+R+R ++ P
Sbjct: 241 LGDSSEVLFPQELQMEVDRQPAPAEAAANVHVHVP--------MPARRR-----GDQMVP 287
Query: 563 DELYSCKNEAGNSGAHDDFCSTAESSAAKRQT 594
S N AG + D + +E + Q
Sbjct: 288 TMTTSSLNRAGTEVSADLVVANSEEEDTRAQV 319
>gi|345872727|ref|ZP_08824656.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
gi|343918048|gb|EGV28819.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
Length = 477
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/480 (41%), Positives = 292/480 (60%), Gaps = 15/480 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFRRDLR++DNPALAAA G V PVY P EE + PG SRWWL +SL L +
Sbjct: 3 AILWFRRDLRLDDNPALAAALASGRPVLPVYIHAPHEEAPWAPGAASRWWLHRSLQSLDR 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ G+ L + + +S LA L ++A A +V +N LYDP RD +I++ + G+
Sbjct: 63 SLQDRGSRLWITRGDS-LAELRRIVAATGAAEVHWNRLYDPRIRDRDAAIEQAIRADGLH 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM--QMEPASILPPWRLVQAAGTIDG 182
+S+NG LL+EPWEI +G + F A+W + ++P + + + + G
Sbjct: 122 CESHNGSLLFEPWEILTAQGQPYRVFSAFWRNATKRLPDIQPTAPTKDIQWTRIEPPLPG 181
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
I+DL L+ E + +A L W+PG A + F++ L RY ++R + TS
Sbjct: 182 LEIKDLALQ--PEIAWDAGLQETWTPGEQAAQDMAAHFLDTRLSRYGEDRDRPDMPGTSR 239
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+S R++ + L ++ E+ E F+R +G RE++ +L ++FP
Sbjct: 240 LSPHLHFGEISPRRLLE-LTRSRVADPSEDPAEP------FIREVGWREFAHHLLYHFPQ 292
Query: 303 THERPLLSNLKYFPWHADL--GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
T PL FPW D +AWRQGRTG P+VDAG+RELW TGW+HNR+R++V+S
Sbjct: 293 TPTEPLNPRFAEFPWKQDETDARLQAWRQGRTGIPVVDAGLRELWDTGWMHNRVRMLVAS 352
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LLLPW+ G +FWDTL+DADL + LGWQ+ +G D R+ +P +QG +FD
Sbjct: 353 FLTKNLLLPWQKGAVWFWDTLVDADLASNTLGWQWTAGCGADAAPYFRVFNPVLQGQRFD 412
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G Y+++W PELAR+P +++H PW AP +L AAGV LG++YP P++DL R++ A
Sbjct: 413 PDGAYIKRWCPELARLPLKFLHQPWTAPTTILTAAGVTLGVDYPHPMVDLATSRQQALAA 472
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 273/480 (56%), Gaps = 9/480 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++VWFR DLR++D PAL AA AR V PVY W P E+G + PG SRWWL SL L +
Sbjct: 35 SLVWFRHDLRLQDQPALVAAVARGEPVIPVYIWSPDEDGDWPPGAASRWWLHHSLHQLNE 94
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ LG+ L++ + + L LL I A V + Y+P ++ RD +K +L + +
Sbjct: 95 QLEELGSRLII-RQGNALTELLSLIDDTGADAVYWTRRYEPAAIQRDSRVKTELRQRNVL 153
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS+NG LL+EPW+I ++G + F A+W CL + P +
Sbjct: 154 AQSFNGQLLFEPWQIETKQGRPYQVFTAFWKTCLTQRTPDEPEPAPSDFLSPRPWPKSAK 213
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ DL L + W PG A + L F+E + Y R + TS LS
Sbjct: 214 LNDLSLRPTIAWDTG--FAERWVPGEKAARQELHRFLESPVFDYVTMRDLPALHGTSRLS 271
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R ++ + ++ + S FL+ +G RE++ +L F+FP T
Sbjct: 272 PHLHFGEISPRTIWHETQRR-----LRQHSQDPTSAETFLKEVGWREFAHHLLFHFPNTP 326
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
PL S FPW D KAW+ G+TGYP+VDAGMRELW TGW+HNR+R+IV+SF VK
Sbjct: 327 REPLRSEFANFPWINDNPRLKAWQTGQTGYPIVDAGMRELWTTGWMHNRVRMIVASFLVK 386
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+PW+ G ++FWDTL+DADL + LGWQ+ +G D R+ +P +Q KFD EG
Sbjct: 387 DLLIPWQKGAEWFWDTLVDADLASNTLGWQWTAGCGADAAPFFRIFNPVLQSQKFDAEGH 446
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y+R+W+PEL +PT+WIH PW A +VL AAGV + YP PI+D D R +A ++
Sbjct: 447 YIRRWVPELKNLPTKWIHAPWTASQSVLTAAGVTMDQAYPLPIVDHDEARHCALEAFRRI 506
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/479 (40%), Positives = 282/479 (58%), Gaps = 9/479 (1%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR+DLR+ DNPAL AA G + PVY + G + G +RWWL SL+ L
Sbjct: 23 LLWFRQDLRLADNPALRAAVESGQPILPVYILDDETPGAWAIGGAARWWLHHSLTALSHD 82
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
LK+LGA L+L + +S + + AT V +N Y+P + RD +IK L + GI
Sbjct: 83 LKALGAPLILRRGDSR-EVIDSLVREAGATAVYWNRCYEPFARKRDEAIKATLKQDGIEA 141
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+N LL+EPW + ++ G F + A+W CL + +P LP + AA SI
Sbjct: 142 RSFNSALLHEPWTVENKSGEPFRVYSAFWRACLA-KGKPDKPLPAPETLVAASAPASDSI 200
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D L ++ + W+PG + A + LT F+++ + RY R + +TS LSP
Sbjct: 201 GDWKLL-PTKPNWAKRFESAWTPGENGAQERLTGFLDEAVNRYKAERDRPDIEATSRLSP 259
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+ R+++ + + A + N + S FL +G RE+S +L ++ E
Sbjct: 260 HLHFGEIGPRQIWHA--TRAAMAAHDLN---EASAEKFLSEVGWREFSHHLLYHNDALPE 314
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
PL FPWH + AW++G TGYP+VDAGMRELWATGW+HNR+R+IV+SF VK
Sbjct: 315 HPLRPEFADFPWHENDKALTAWQRGLTGYPIVDAGMRELWATGWMHNRVRMIVASFLVKD 374
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+PW+ G +FWDTL+DADL + WQ+++G D R+ +P +QG KFDPEG Y
Sbjct: 375 LLIPWQEGEAWFWDTLVDADLANNAASWQWVAGCGADAAPYFRIFNPVLQGEKFDPEGAY 434
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
VR+W+PELA+MP IH PW AP +V++ AGV LG +YP PI+D R+R A ++
Sbjct: 435 VRRWVPELAKMPASHIHKPWLAPDDVMRQAGVTLGKSYPNPIVDHGTARDRALDAFSRI 493
>gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 181/287 (63%), Positives = 217/287 (75%), Gaps = 11/287 (3%)
Query: 263 MKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLG 322
MKQ+ W+ E N +G+E + FLR++GLREYSRYL FN P +HE+PLL++L++FPW +
Sbjct: 1 MKQLTWSNESNRDGEEGCSLFLRSIGLREYSRYLAFNHPCSHEKPLLAHLRFFPWVVNEV 60
Query: 323 NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLL 382
FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLL
Sbjct: 61 YFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 120
Query: 383 DADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIH 442
DADLE D LGWQYISGSLPDG EL+R+D+P+ +G KFDP GEYVR+WLPELAR+PTEWIH
Sbjct: 121 DADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIH 180
Query: 443 HPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEV 502
HPWDAP +VL+AAG+ELG NYP PI++LD + RL A+ +MWE+EAA A NG E
Sbjct: 181 HPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAASRAEIENGMEEG 240
Query: 503 VFDNSDRIQTPAIPQ-----VVLREKSTCPTISS-----NDQKVPSF 539
+ D+SD A PQ V R S P + DQ VPS
Sbjct: 241 LGDSSDEPPI-AFPQELQHMEVDRATSHTPATAGPARRRADQMVPSI 286
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 198/494 (40%), Positives = 274/494 (55%), Gaps = 6/494 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M +VWFR+DLR+ DNPAL+ AAR G V PV+ G + PG SRWWL SL
Sbjct: 1 MRATPILVWFRQDLRLADNPALSDAARSGRPVVPVFVLDDDTPGGWRPGGASRWWLHHSL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ L +SL + G+ LVL + + +A + E + A V++N Y+P + RD +K L
Sbjct: 61 ASLSRSLATAGSPLVLRRGRADVA-IGELVRETGAGTVLWNRCYEPWATERDSRLKADLR 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ V+S+NG LL EP + G + F +W P + P RL
Sbjct: 120 AAGVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPDRLEAPPTA 179
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+E GL + + L + W PG + L F+E Y + R + G +
Sbjct: 180 PASDPLESWGLLPTTPDWAGGLR-QAWQPGEAAVAARLRAFLEGAAADYAEGRDRPGSDG 238
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSPYLHFGE+S R+V+ + E+ ES FLR +G RE+ L ++
Sbjct: 239 TSRLSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAES---FLRELGWREFCYNLLYH 295
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP ERPL + FPW D +W++GRTGYP+VDAGMR+LW TGW+HNR+R+IV
Sbjct: 296 FPKLPERPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRMIVG 355
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LLLPW+ G ++FWDTL+DADL + GWQ+I+G D R+ +P +QG KF
Sbjct: 356 SFLVKHLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQGGKF 415
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G YVR+W+PELA +P IH PW A L+ AG+ LG +YP P I+ GR+R
Sbjct: 416 DPDGRYVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKRGRDRALA 475
Query: 480 AIFKMWEMEAADNA 493
A + + A +A
Sbjct: 476 AFATLRQAGDAADA 489
>gi|392382530|ref|YP_005031727.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
gi|356877495|emb|CCC98335.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
Length = 485
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 269/478 (56%), Gaps = 12/478 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL+AAA DG+ V PVY + PG SRWWL SL LG++
Sbjct: 9 LVWFRSDLRLADNPALSAAAEDGAPVIPVYIREKDAHDPWLPGAASRWWLHGSLERLGKA 68
Query: 66 LKSLGAELVLFKTE--STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L LG+ LVL + S LAAL E A V+ N P ++ RD + E+L G+
Sbjct: 69 LAKLGSPLVLRSGDPASVLAALAEETGA---DTVLCNRRAGPTAIARDRRVGERLSARGV 125
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+V +N LLYEP I + F F +W L M P P +L A +
Sbjct: 126 TVHPHNAALLYEPGTIRTKSDTPFRVFTPFWKALLSMPEPPRPTRAPGKLTPPAKPVSSE 185
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S++D L + + L R W+PG A + L +F++ + Y R + + TS +
Sbjct: 186 SLKDWCLLPSAPDWAGGLRER-WTPGEEAARERLADFLDGPVAAYPAERDRPDHDGTSAM 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L FGE+ R+++ A ++ E FLR +G RE++ +L P
Sbjct: 245 SPHLAFGEIGPRQIWHA-----ARHAADQRHELAAGAEAFLRELGWREFNHHLLREEPGI 299
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ PL + FPW D +AW+ GRTGYP+VDAGMR+LW TGW+HNR+R+IV SF +
Sbjct: 300 PDTPLDTRFARFPWRTDKAGLRAWQSGRTGYPIVDAGMRQLWQTGWMHNRVRMIVGSFLI 359
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G +FWDTL+DAD+ + WQ+++G D R+ +P +QG KFDPEG
Sbjct: 360 KDLLIPWQEGESWFWDTLVDADIANNAGNWQWVAGCGADAAPFFRVFNPILQGEKFDPEG 419
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR+++PEL +P WIH PW+AP L+ AGV+LG +YP+P+ID R+R A
Sbjct: 420 AYVRRYVPELEALPNRWIHKPWEAPDEALRQAGVKLGKDYPRPVIDHGTARDRALAAF 477
>gi|390949735|ref|YP_006413494.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
gi|390426304|gb|AFL73369.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
Length = 495
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 195/483 (40%), Positives = 273/483 (56%), Gaps = 27/483 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T++WFRRDLR++DNPAL A G+ + PVY P EE + PG SRWWL SL L
Sbjct: 5 TLLWFRRDLRLDDNPALIHALTTGAPIVPVYIHAPDEEAPWTPGAASRWWLHGSLLALDA 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ G+ L + + +S L L ++A AT V +N LYDP + RD IK+ L G+
Sbjct: 65 SLQRFGSRLWIARGDS-LTELRRIVAATGATGVSWNRLYDPATRERDTHIKQALRSDGLR 123
Query: 125 VQSYNGDLLYEPWEIYDER------GHAFTTFDAYWDKCLQ----MQMEPASILPPWRLV 174
+S+ LL+EPWEI + G + F A+W C++ ++ +PA P L
Sbjct: 124 CESHRSTLLFEPWEIASQTRSASKTGQPYRVFSAFWRACVRELSGIRPDPA----PESLP 179
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+DG +++DLGL L W+PG S A T F++ + Y R +
Sbjct: 180 AGFAPVDGLTVDDLGLLPTIPWDQG--LRATWTPGESAALARATAFLDARIGAYSVARDR 237
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TS LSP+LHFGE+S R++ + + F+R +G RE+S
Sbjct: 238 PDAPGTSRLSPHLHFGEISPRRLLAMI-------LDRFGDPAADPAESFVRELGWREFSY 290
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+L ++FP T PL FPW + AW++GRTG PLVDAGMRELW TGW+HN
Sbjct: 291 HLLYHFPRTPVEPLDPRFADFPWRTEGVAERLDAWQRGRTGIPLVDAGMRELWHTGWMHN 350
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R++ +S K L LPW+ G ++FWDTL+DADL + GWQ+ +G D R+ +P
Sbjct: 351 RVRMVAASLLTKNLRLPWQVGARWFWDTLVDADLASNTQGWQWTAGCGADAAPYFRVFNP 410
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
QG +FDP+G YVR+W PELAR+P ++IH PW APP +L AA + LG +YP PI+DL
Sbjct: 411 VRQGERFDPDGGYVRRWCPELARLPNQYIHQPWTAPPPILMAADIRLGCHYPLPIVDLAT 470
Query: 473 GRE 475
R+
Sbjct: 471 SRQ 473
>gi|381158412|ref|ZP_09867645.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
gi|380879770|gb|EIC21861.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
Length = 493
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 205/488 (42%), Positives = 276/488 (56%), Gaps = 29/488 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
I+WFRRDLR+ DNPAL AA DG + PVY P EE + PG S WWL SL L
Sbjct: 5 AILWFRRDLRLSDNPALMAAL-DGCERLLPVYLHAPDEEAPWSPGAASNWWLHHSLQALD 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L+ G+ L + + +S LA L I+A A V +N Y+P + RD IK++L GI
Sbjct: 64 ACLRERGSRLFILRGDS-LACLQALITATSARAVFWNRCYEPARIARDSFIKQQLRAQGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-PA-----SILPPWRLVQAA 177
+S+NG LL+EPWEI F F A+W + E PA +LPP A+
Sbjct: 123 RCESHNGGLLFEPWEIKTGADQPFKVFSAFWRRATARLAEIPAPSPTPEVLPPLPEAIAS 182
Query: 178 G-TIDGCSIEDLGLEDES---EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
G T S+ + LE S +A W PG + A L F++Q Y + R+
Sbjct: 183 GRTQLSKSLAEQPLERLDLLPRISWDAAFPTTWQPGAAGAQARLRRFLDQAAHDYAETRE 242
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ G +S LSP+LHFGE+ R+V + A E+ F+R +G RE+S
Sbjct: 243 QPGVEGSSKLSPHLHFGEIGPREVLK---------ATNATVGDHEA---FVRELGWREFS 290
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGWIH 351
+L F+FP T E PL FPW +AW+QG+TG PL+DAGMRELW +GW+H
Sbjct: 291 VHLLFHFPQTAEVPLNPLFADFPWRDPTPPELLRAWQQGQTGIPLIDAGMRELWHSGWMH 350
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+SF K L +PW+ G ++FWDTL+DA+L + GWQ+ +G D R+ +
Sbjct: 351 NRVRMIVASFLTKNLRIPWQTGARWFWDTLVDANLANNTQGWQWTAGCGADAAPYFRIFN 410
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL- 470
P QG +FDPEG YVR W PEL R+P ++H PW AP +L+ +GVELG+ YP+PIIDL
Sbjct: 411 PVRQGERFDPEGVYVRHWCPELTRLPKRYLHAPWTAPVAILQQSGVELGITYPRPIIDLA 470
Query: 471 DLGRERLT 478
D RE L
Sbjct: 471 DTRREALA 478
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 199/482 (41%), Positives = 271/482 (56%), Gaps = 15/482 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFR DLR+ DNPALA AA G F V + + EG G +RWWL +L L S
Sbjct: 10 AIVWFRDDLRLTDNPALARAAESGRPF-VCVYVLEREGTRPLGGAARWWLDGALRSLDAS 68
Query: 66 LKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L G L++ + + T+AAL E + A V +N YD ++ D ++K L E GI
Sbjct: 69 LAGHGGRLLVLEGDERETIAALAE---ELDAGAVYWNRRYDGIARETDGALKRSLKEAGI 125
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP--WRL--VQAAGT 179
+S+NG LL EPWE+ G AF F AYW L+ A + P WR + A+
Sbjct: 126 EAESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSGDVSAPLAEPSTWRFHTLPASLA 185
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
I+ LGL + L W P A ++L F+++ + Y + R + +
Sbjct: 186 RRALKIDALGLLPTRPDWAGGLR-EAWVPTEEAALELLERFLDKKIRGYGEARDRPDRPA 244
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSPYL FG+LS R+V W + A+E + F+ +G RE+ L ++
Sbjct: 245 TSRLSPYLRFGQLSARQV----WHAAMAAAREGGAAVAADIEKFVSELGWREFDTSLLYH 300
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP R PW D F AW +GRTGYPLVDAGMRELW TGW+HNR+R++V+
Sbjct: 301 FPELPTRNYRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMRELWTTGWMHNRVRMVVA 360
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF +K LL+ WR G ++FWDTL+DAD+ + WQ+++G D R+ +P QG KF
Sbjct: 361 SFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAAPYFRIFNPVTQGRKF 420
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DPEG+YVR+W+PELAR+P + IH PW A P VL+AAGV LG YP+PI+D D R+R
Sbjct: 421 DPEGDYVRRWVPELARLPADAIHEPWRAKPIVLEAAGVVLGQTYPEPIVDHDAARQRALG 480
Query: 480 AI 481
A+
Sbjct: 481 AL 482
>gi|407683884|ref|YP_006799058.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245495|gb|AFT74681.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
Length = 474
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 270/480 (56%), Gaps = 20/480 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+I+WFR+DLR++DNPAL AA G + P+Y + PG S+WWL SLS L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLN-- 63
Query: 66 LKSLGAELVLFKTE-STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
K L L +FK + TL L + A A + +N Y+P + RD +IK+ L+E
Sbjct: 64 -KRLNGHLQIFKGDPQTLVPKL--MKAFNAKGIFWNRCYEPWQINRDKTIKKTLIEHDYE 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGC 183
S NG LL+EP ++ + G + F Y+ K CLQ++ PP R+ A D
Sbjct: 121 AHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYADVDNDSD 180
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ L L + +A + + WSPG A L +F+E +Y R N TS L
Sbjct: 181 GLTSLDLL--PSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRL 238
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLREYSRYLCFNFP 301
SP+LHFGE+S Q+ +A ++ F E S+ +L +G RE+S YL F+FP
Sbjct: 239 SPHLHFGEVSPN---------QVWYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFP 289
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ FPW D KAW++G TG P+VDAGMRELW TG++HNR+R+IV SF
Sbjct: 290 TLPNKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSF 349
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LLL W G ++FWDTLLDADL + WQ+++GS D R+ +P +QG KFD
Sbjct: 350 LVKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDK 409
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+G YVR++ PEL ++ ++IH PW+AP +LK AG+ELG YPKPI+DL R+R A
Sbjct: 410 KGNYVRKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAF 469
>gi|344341302|ref|ZP_08772223.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
gi|343798882|gb|EGV16835.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
Length = 481
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 274/473 (57%), Gaps = 13/473 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFRRDLR++DNPAL AA D + PVY P E + PG SRWWL SL+ + Q
Sbjct: 5 VILWFRRDLRLDDNPALQAALIDCDRLVPVYVHDPDSEAPWAPGAASRWWLHGSLASMDQ 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++ G L++ + ++ LA L ++A AT++ +N LYDP + RD IK+ L G+
Sbjct: 65 ALQTFGTGLLIARGDA-LAELRRIVAATGATRIHWNRLYDPTTRDRDGRIKQALRADGLR 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+S+N LL+EPWEI G + F A+W +C + + P L + D
Sbjct: 124 AESHNASLLFEPWEIATGTGEPYRVFTAFWRRCGARLSDVGPLPAPTTLPPPPESPDSLP 183
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E+L L + L W+PG + A + FV+ + Y R TS LS
Sbjct: 184 LENLALLPRIPWDTG--LRETWTPGETAALEQARAFVQGRIQGYASARDLPALAGTSALS 241
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
+LHFGE+ R+V + ++ + + V F+R +G RE++ +L +++P T
Sbjct: 242 SHLHFGEIGPRRVLAMV-------REQWDDPTADPVETFVREIGWREFAHHLIYHYPHTT 294
Query: 305 ERPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ PL PW + + +AW++G TG PLVDAGMR+LW TGW+HNR+R++V+SF
Sbjct: 295 DEPLDRRFAALPWREEDADRLLRAWQRGETGIPLVDAGMRQLWHTGWMHNRVRMVVASFL 354
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K L LPW+ G ++FWDTL+DADL + LGWQ+ +G D R+ +P +QG +FD
Sbjct: 355 TKNLRLPWQAGARWFWDTLVDADLAANSLGWQWSAGCGADAAPYFRIFNPVLQGERFDKS 414
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G YVR+W PELAR+P ++IH PW AP +L+ AG+ LG +YP PI+DL RE
Sbjct: 415 GAYVRRWCPELARLPDKYIHQPWTAPSALLEHAGIRLGRDYPAPIVDLKASRE 467
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 346 bits (887), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 197/478 (41%), Positives = 264/478 (55%), Gaps = 15/478 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T++WFRRDLR+ DNPAL AA R G V VY ++ G + G SRWWL SL L +
Sbjct: 14 TLLWFRRDLRLADNPALTAAVRRGRPVVAVYILDDEDAGDWASGGASRWWLHHSLERLAE 73
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ G+ L+L + + A L IS A V +N Y+P + RD +IK L G
Sbjct: 74 SLRGRGSRLIL-RRGAAAAVLDRLISETGAEAVYWNRCYEPWATARDQAIKASLRLRGHE 132
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGC 183
V+S+N LL EPWEI + G + F +W K L+ +P +LP P R+
Sbjct: 133 VRSFNASLLREPWEIASKVGGPYRVFTPFW-KALRAMGDPGDLLPTPDRIPTLEVAPASD 191
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
I+ L + L W PG + A + L F++ Y K R G N TS L
Sbjct: 192 DIDAWALTPSKPDWAFGLRA-AWKPGEAAARQRLEAFLDGAAPEYAKRRNFPGTNGTSRL 250
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+ R+++ A ++ FL + RE+S +L F+FP
Sbjct: 251 SPHLHFGEIGPRQIWHAASFHHTGMATDQ----------FLSEIAWREFSHHLLFHFPML 300
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
PL F W D G AWR G TGYP+VDAGMRELWATGW+HNR+R+IV+SF V
Sbjct: 301 PTTPLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRVRMIVASFLV 360
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLLPW+ G ++FWDTL+DADL + WQ+++G D R+ +P +QG+KFDP+G
Sbjct: 361 KDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSLQGAKFDPQG 420
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR+W+PE+A +P IH P DA L AG+ LG +YP PIID R+R A
Sbjct: 421 TYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAARDRALTAF 478
>gi|344344031|ref|ZP_08774896.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
gi|343804315|gb|EGV22216.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
Length = 480
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 268/475 (56%), Gaps = 19/475 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR++DNPAL AA R G+ + PVY P EE + PG SRWWL SL L +
Sbjct: 6 IVWFRRDLRLDDNPALEAALRAGARILPVYIHAPDEEAPWAPGAASRWWLHHSLESLDGA 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ GA L + + +S LA L A + +N LYDP + RD IK++L G+
Sbjct: 66 LRARGARLWIGQGKS-LALLRRLAETSGARAIHWNRLYDPATRARDTEIKQQLRAAGLDC 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRL--VQAAGTIDG 182
S+NG LL+EPWE G + F A+W C ++ P I P R+ V+ G G
Sbjct: 125 ASHNGALLFEPWEAATGNGGPYKVFSAFWRHCAPRLAEHPDPIAAPARIPTVELDG---G 181
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++ +LGL S + L W+PG A F+ L Y K R TS
Sbjct: 182 ATVAELGLL--PRLSWDQGLAANWTPGEDGARMAAEHFLAGPLGGYGKLRDHPDRPGTSR 239
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+ R++ + L A E F R +G RE++ +L ++FP
Sbjct: 240 LSPHLHFGEIGPRRLLAL--TRAALPAPPTLGEDA-----FARELGWREFAYHLLYHFPQ 292
Query: 303 THERPLLSNLKYFPWH--ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
T E PL + +PW +D + W++GRTG PLVDAGMRELW TGW+HNR+R++ +S
Sbjct: 293 TPEHPLDARFADYPWREPSDTELLERWQRGRTGIPLVDAGMRELWHTGWMHNRVRMVAAS 352
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
K L LPW+ G ++FWDTL+DADL C+ LGWQ+ +G D R+ +P QG +FD
Sbjct: 353 LLTKNLRLPWQLGARWFWDTLVDADLACNTLGWQWTAGCGADAAPYFRVFNPVRQGERFD 412
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
P G+YVR+W PELAR+P + + PW A L AGV L LNYP P+IDL R
Sbjct: 413 PNGDYVRRWCPELARLPDKVLQQPWTATNTTLARAGVGLDLNYPAPMIDLAQSRR 467
>gi|407687838|ref|YP_006803011.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291218|gb|AFT95530.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 476
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 269/479 (56%), Gaps = 16/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+I+WFR+DLR++DNPAL AA G + P+Y + PG S+WWL SLS L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLN-- 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
K L L +FK + + + + + A + +N Y+P + RD +IK+ L+E
Sbjct: 64 -KRLNGHLQIFKGDPQ-TLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHDYEA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGCS 184
S NG LL+EP ++ + G + F Y+ K CLQ++ PP R+ A D S
Sbjct: 122 HSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYADVDNDSDS 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
L+ + +A + + WSPG A L +F+E +Y R N TS LS
Sbjct: 182 DGLTSLDLLPTINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRLS 241
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLREYSRYLCFNFPF 302
P+LHFGE+S Q+ +A ++ F E S+ +L +G RE+S YL F+FP
Sbjct: 242 PHLHFGEVSPN---------QVWYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFPT 292
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ FPW D KAW++G TG P+VDAGMRELW TG++HNR+R+IV SF
Sbjct: 293 LPNKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 352
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLL W G ++FWDTLLDADL + WQ+++GS D R+ +P +QG KFD +
Sbjct: 353 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 412
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
G YVR++ PEL ++ ++IH PW+AP +LK AG+ELG YPKPI+DL R+R A
Sbjct: 413 GNYVRKYCPELNKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAF 471
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 270/480 (56%), Gaps = 19/480 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+ DNPAL+ A G V PVY + + EG G S+WWL SL+ L +
Sbjct: 7 VIVWFRRDLRLADNPALSEALASGEPVLPVYVFDEEGEGDSPDGAASKWWLHHSLASLDE 66
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SLK LG+ LVL + S +AL+E + A V +N Y+P + RD IK+ LV+ G+
Sbjct: 67 SLKGLGSRLVLLRGSSK-SALVELCREMGARAVFWNRRYEPAVVERDTEIKKSLVDCGVQ 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+S+NG L+ P + ++ G F F +W K +Q + P L G S
Sbjct: 126 ARSFNGSLMQSPLSVANKSGTPFKVFTPFW-KHIQNLSTRTPLAKPDALTTPKSLPKGES 184
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E L + W PG A+K L+ F + +Y K+R S LS
Sbjct: 185 LESFELLPRLSWADG--FNEEWIPGEKGAEKALSLFAKGGAAKYAKDRDTPSVRGVSRLS 242
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S +++ L K K E + LR + RE++ +L F+F T
Sbjct: 243 PHLHFGEISPNQIWHALDRK-----KHEPY---------LRQIAWREFAHHLLFHFKDTP 288
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
PL FPW + G KAW+ G+TGYP+VDAGMRELW TGW+HNR+R+I SSF VK
Sbjct: 289 SEPLRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRVRMIASSFLVK 348
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL PW+ G +FWDTL+DADL + +GWQ+++G D R+ +P QG +FD +G
Sbjct: 349 HLLQPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPITQGERFDGDGT 408
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y R+W+PELAR+P +++ PW+AP +L+ AGV+LG NYP PI+D R+ A +M
Sbjct: 409 YTRRWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKARKAALDAYAEM 468
>gi|406596893|ref|YP_006748023.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
gi|406374214|gb|AFS37469.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
Length = 474
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 269/479 (56%), Gaps = 18/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+I+WFR+DLR++DNPAL AA G + P+Y + PG S+WWL SLS L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLN-- 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
K L L +FK + + + + + A + +N Y+P + RD +IK+ L+E
Sbjct: 64 -KRLNGHLQIFKGDPQ-TLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHEYEA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGCS 184
S NG LL+EP ++ + G + F Y+ K CLQ++ PP R+ A D
Sbjct: 122 HSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYADVDNDSDG 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L L + +A + + WSPG A L +F+E +Y R N TS LS
Sbjct: 182 LTSLDLL--PSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLREYSRYLCFNFPF 302
P+LHFGE+S Q+ +A ++ F E S+ +L +G RE+S YL F+FP
Sbjct: 240 PHLHFGEVSPN---------QVWYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFPT 290
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ FPW D KAW++G TG P+VDAGMRELW TG++HNR+R+IV SF
Sbjct: 291 LPNKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLL W G ++FWDTLLDADL + WQ+++GS D R+ +P +QG KFD +
Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 410
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
G YVR++ PEL ++ ++IH PW+AP +LK AG+ELG YPKPI+DL R+R A
Sbjct: 411 GNYVRKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAF 469
>gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
Length = 350
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 173/311 (55%), Positives = 218/311 (70%), Gaps = 13/311 (4%)
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
THER LL NLK++PW AD FK+WRQG TGYPLVDAGMRELWATGW HNRIRVIVSSFA
Sbjct: 1 THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LL+PW WGMKYFWD LLDAD+E DILGWQYISG LPDGHEL RLD+PE+QG K+DP+
Sbjct: 61 VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR W+PELARMP EWIHHPWDAP ++L+ AGVELG NYP PI++L + RE L AI
Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLDDAIS 180
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNG 542
MW+++ A+ + +G EVV DN I++ +P+VVL+E S P+ DQKVP+ +G
Sbjct: 181 TMWQLDTAEKLAELDG--EVVEDNLSHIKSFDLPKVVLKELS--PSAPHCDQKVPT-DDG 235
Query: 543 KNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSV 602
+N K + ++ D + + K E D S S +++++++ F V
Sbjct: 236 RNLELQPKELTGLNKQTICVDVIKASKME--------DTGSIVNSPISRKRSSSGSVFDV 287
Query: 603 PHSFSLSEGKA 613
P S E ++
Sbjct: 288 PSCSSSVEVRS 298
>gi|381168517|ref|ZP_09877711.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
gi|380682377|emb|CCG42529.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
Length = 482
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 198/497 (39%), Positives = 263/497 (52%), Gaps = 52/497 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVY---TWCPKEEGQFYPGRVSRWWLKQSLSY 61
IVWFRRDLR+ DNPAL AA G + P++ T P+ E G +RWWL SL
Sbjct: 5 AIVWFRRDLRLADNPALVEAAASGQPLIPLFIDETGVPEGEAD---GGATRWWLHHSLLS 61
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
LG+ L + G L+L + E LA L ++A AT+V++N Y P +V+D +IK L
Sbjct: 62 LGRDLAARGVPLLLRRGEP-LAVLEALVAATGATRVLWNRRYTPRGVVQDTTIKAALTRH 120
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-----------------QMEP 164
GI V+S+ LL+EPWEI G F F +W CL + P
Sbjct: 121 GIEVRSFKAGLLFEPWEIATRSGTPFRVFTPFWRSCLAAPPPDRPLPPPAALRPCESVPP 180
Query: 165 ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
L WRL+ A G D W PG + A+ L F++Q
Sbjct: 181 GDDLGSWRLLPTAPDWAGGLNAD------------------WQPGEAGAEARLQIFLDQR 222
Query: 225 LLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFL 284
L Y R G TS LSP+L FGE+S R+ F A + + FL
Sbjct: 223 LKAYAVARDLPGQAGTSRLSPHLAFGEISPRRAFH---------AARDAAGSGNGLDRFL 273
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+G RE+ +L F P E+PL FPW D AW++GRTG+PLVDAGMREL
Sbjct: 274 AELGWREFCAHLLFTVPDLPEQPLRGEFAAFPWRDDPELLVAWQRGRTGFPLVDAGMREL 333
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
W TGW+HNR+R++V+SF VK LLL WR G +F DTL+DADL ++ WQ+++G D
Sbjct: 334 WTTGWMHNRVRMVVASFLVKDLLLSWRLGADWFRDTLVDADLASNVASWQWVAGCGADAA 393
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
R+ +P +QG KFDP+G YVR+W PELA +P W+H P A +L+ AGV LG +YP
Sbjct: 394 PFFRIFNPTLQGEKFDPDGRYVRRWCPELAGLPDRWLHQPGRASDIILRQAGVSLGRSYP 453
Query: 465 KPIIDLDLGRERLTQAI 481
PI+D D+ R R A+
Sbjct: 454 HPIVDHDVARRRALAAM 470
>gi|431931754|ref|YP_007244800.1| deoxyribodipyrimidine photolyase [Thioflavicoccus mobilis 8321]
gi|431830057|gb|AGA91170.1| deoxyribodipyrimidine photolyase [Thioflavicoccus mobilis 8321]
Length = 479
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 179/473 (37%), Positives = 263/473 (55%), Gaps = 10/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ I+W RRDLR+ DNPAL+ A + G + P+Y CP EEG++ G SRWWL SL+ L
Sbjct: 3 DTVILWLRRDLRLADNPALSRALSGAGRLVPLYIHCPAEEGRWRAGAASRWWLHHSLAAL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
++ + G+ L++ + E +L L +A AT++ + Y+P + D + L G
Sbjct: 63 DRAFRERGSRLLIARGEDSLTELRRIATACGATRICWARRYEPATRATDARTELALRADG 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+ S G+LL+EPW++ E + F AYW + + P P L A +
Sbjct: 123 LRCDSVEGNLLFEPWDLATEANGPYRVFSAYWRRAVTRLTLPVIEPAPTALPPAPSDLGA 182
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
S+++LGL + L W+PG A + F++ L Y R + G TS
Sbjct: 183 LSVDELGLLPRVRWDTG--LAHAWTPGEDGAQARASAFIDGPLATYAAKRDRPGVLGTSR 240
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+ R++ + + A + ++R +G RE++ +L +FP
Sbjct: 241 LSPHLHFGEIGPRQLVRMI-------ADRGLVLDEGPAEPYVRELGWREFAYHLIHHFPH 293
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
T + PL FPW D AW++GRTG PL+DAG+RELW TGW+HNR+R+ +S
Sbjct: 294 TTDEPLDERFAAFPWREDETLLAAWQRGRTGIPLIDAGLRELWKTGWMHNRVRMAAASLL 353
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K L PW+ G ++FWDTL+DADL + LGWQ+ +G D R+ +P QG +FDP
Sbjct: 354 TKNLRQPWQAGARWFWDTLVDADLASNTLGWQWTAGCGADAAPYFRIFNPVRQGERFDPT 413
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G+YVR+W PELAR+P +IH PW AP VL AG+ LG +YP+PI+DL R
Sbjct: 414 GDYVRRWCPELARLPARFIHQPWAAPAGVLTDAGIRLGSDYPQPIVDLAASRR 466
>gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
Length = 350
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 173/311 (55%), Positives = 217/311 (69%), Gaps = 13/311 (4%)
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
THER LL NLK++PW AD FK+WRQG TGYPLVDAGMRELWATGW HNRIRVIVSSFA
Sbjct: 1 THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LL+PW WGMKYFWD LLDAD+E DILGWQYISG LPDGHEL RLD+PE+QG K+DP+
Sbjct: 61 VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
GEYVR W+PELARMP EWIHHPWDAP ++L+ AGVELG NYP PI++L RE L AI
Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECLDDAIS 180
Query: 483 KMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNG 542
MW+++ A+ + +G EVV DN I++ +P+VVL+E S P+ DQKVP+ +G
Sbjct: 181 TMWQLDTAEKLAELDG--EVVEDNLSHIKSFDLPKVVLKELS--PSAPHCDQKVPT-DDG 235
Query: 543 KNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSV 602
+N K + ++ D + + K E D S S +++++++ F V
Sbjct: 236 RNLELQPKELTGLNKQTICVDVIKASKME--------DTGSIVNSPISRKRSSSGSVFDV 287
Query: 603 PHSFSLSEGKA 613
P S E ++
Sbjct: 288 PSCSSSVEVRS 298
>gi|344924235|ref|ZP_08777696.1| deoxyribodipyrimidine photo-lyase [Candidatus Odyssella
thessalonicensis L13]
Length = 473
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 274/474 (57%), Gaps = 18/474 (3%)
Query: 5 RTIVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+ IVWFR+DLR+ DNPAL A R + P++ + G + PG SRWWL SL L
Sbjct: 2 KCIVWFRKDLRLTDNPALQEAVRLKAQIIPIF--ILENSGPWQPGGASRWWLHHSLHQLN 59
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+L + + F L LLE I +AT VV+N Y P + D IK +L GI
Sbjct: 60 SALNNS----MHFYQGDPLPILLELIKQTQATAVVWNRRYGPEEIAVDTRIKTELEARGI 115
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGTIDG 182
V+S+N LL+EPWEI + +G F F +W KCL + ++EP +P + + T D
Sbjct: 116 GVKSFNSHLLFEPWEIQNNQGKFFQVFTPFWKKCLARARIEPPLPIPANMQLMSGATFD- 174
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++ LGL ++ L + W+PG A + L F+ + + Y +NR +TSL
Sbjct: 175 --LKKLGLLPTKPDWASGL-RQTWTPGEVGAQQKLANFISR-IAGYKQNRNYPAQQATSL 230
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+L +GE+SVR+++ + + L+ E + FL +G RE+S +L ++ P
Sbjct: 231 LSPHLAWGEISVRQLWHAIHTQIRLYPVLE-----QDALNFLSEIGWREFSYHLLYHVPT 285
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
PL FPW D + W QG+TGYP++DAGMRELW TG++HNR+R+IV+SF
Sbjct: 286 LPTHPLRQQFANFPWQQDENALRKWSQGQTGYPIIDAGMRELWHTGYMHNRVRMIVASFL 345
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLL W+ G +FWDTL+DADL + WQ+++G D R+ +P +QG KFDPE
Sbjct: 346 VKDLLLSWQQGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQGEKFDPE 405
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
GEYV++W+PEL + ++IH PW A LK AG+ELG+ YP P++D + R R
Sbjct: 406 GEYVKRWVPELDLLSADYIHKPWQASAIKLKGAGIELGVTYPFPMVDHEKARHR 459
>gi|407700132|ref|YP_006824919.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
gi|407249279|gb|AFT78464.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
Length = 474
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 271/479 (56%), Gaps = 18/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+I+WFR+DLR++DNPAL AA G + P+Y + PG S+WWL SL+ L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTTPNGREPGGASKWWLHHSLASLN-- 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
K L L +FK + + + +++ A + +N Y+P + RD IK+ L++
Sbjct: 64 -KRLNGHLQIFKGDPR-KLIPKLMASFDAKGIFWNRCYEPWQINRDKGIKKTLIDSDYEA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGCS 184
S+NG LL+EP ++ + G + F Y+ K CLQ++ PP R+ A + +G
Sbjct: 122 HSFNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQIEEPRYPKAPPARITYADVSNEGDD 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L L + + + + W+PG A L +F++ +Y R TS LS
Sbjct: 182 LASLRLLPTIK--WDETIAKTWAPGEDGAADNLADFIQNSARKYKDGRDIPSAKGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLREYSRYLCFNFPF 302
P+LHFGE+S Q+ +A ++ F E S+ +L +G RE+S YL F+FP
Sbjct: 240 PHLHFGEVSPN---------QVWYAIKDKFGNSEDKSIETYLSELGWREFSYYLLFHFPT 290
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ FPW D KAW+ GRTG P+VDAGMRELW TG++HNR+R+IV SF
Sbjct: 291 LPNKNFNDKFDKFPWRTDAKALKAWQTGRTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLL W G ++FWDTLLDADL + WQ+++GS D R+ +P +QG KFD +
Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDSK 410
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
G+YVR++ PEL ++ ++IH PW+AP +LK AG+ELG YPKPI+DL R+R A
Sbjct: 411 GKYVRKYCPELNKLSDKYIHKPWEAPNAILKEAGIELGKEYPKPIVDLKASRQRALDAF 469
>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
Length = 504
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 264/475 (55%), Gaps = 12/475 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAA-----RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
IVWFR DLR+ DNPAL AAA R G+V P+Y + + G RWWL SL
Sbjct: 21 IVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQRWWLHGSLER 80
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L G+ LVL + E A L I+ A V++N Y P RD +IK+ L
Sbjct: 81 LATCCARHGSPLVLRRGEPA-AVLDALIAETGAGCVLWNRRYAPAQTARDAAIKQGLKAR 139
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GI +S+N LL EPW + ++ G +F F +W P P L A
Sbjct: 140 GIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTRAPAALKAPATAPA 199
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G ++E GL + + L R W PG + A L +F++ + Y R + + TS
Sbjct: 200 GDALEGWGLPPTAPDWAAGLRKR-WVPGETAALSHLADFLDGPVGVYATERDRPDRHGTS 258
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+L FGE+ R+V+ E E + FFLR +G RE+ +L + P
Sbjct: 259 TLSPHLAFGEIGPRQVWHAARHA-----AEARPELAAGIDFFLREVGWREFQYHLLHHAP 313
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
ERPL FPW D +AWR+GRTGYP+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 314 ELPERPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGWMHNRVRMIVASF 373
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LLLPW+ G ++FWDTL+DADL + WQ+++G D R+ +P +QG KFDP
Sbjct: 374 LVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFDP 433
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+G+YVR+++PEL R+P WIH PW AP +L+ AG+ LG +YP+PI+D R+R
Sbjct: 434 DGDYVRRYVPELDRLPPRWIHQPWTAPTEILRQAGIRLGADYPRPILDHGAARDR 488
>gi|350562636|ref|ZP_08931469.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349778975|gb|EGZ33324.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 487
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 194/490 (39%), Positives = 274/490 (55%), Gaps = 25/490 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T+VW RRDLR+ D PAL AA G+ V PV+ P+EE + PG S WWL SL+ L +
Sbjct: 4 TLVWLRRDLRLADQPALLAAVERGAPVVPVFVHAPEEEAPWQPGAASNWWLHHSLARLSE 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G+ L+L + TL L E + A V +N LY+P + RD IK +L E G+
Sbjct: 64 ALERRGSRLIL-RRGPTLETLRELVQETGADAVFWNRLYEPAVIRRDRQIKRRLRESGLR 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC- 183
V+S+N LL+EPW I G + F +W C Q ++ + P L
Sbjct: 123 VESFNAALLHEPWCIRSGSGDPYRVFSPFWKSCRQAGIDGTPLPEPEALPAPPTAAARPG 182
Query: 184 --------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
S++ LGL E +A L R W+PG + A + L +F+E RY++ R
Sbjct: 183 AAPWPGSESLDALGLL--PELRWDAGLDRTWTPGEAGAHRRLHDFLENSAERYHRLRDLP 240
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE-SVTFFLRAMGLREYSR 294
G TS LSP+LHFGE+S R++ + L ++ + S FLR +G RE++
Sbjct: 241 GQPGTSRLSPHLHFGEISPRQIVRAL--------RDAGLDPDSGSAEPFLREIGWREFAH 292
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+L F+FP T E PL + FPW + +AW+QGRTG P+VDA MRELW TGW+HNR
Sbjct: 293 HLLFHFPHTTEAPLNPRFEAFPWRESERDLRAWQQGRTGIPIVDASMRELWQTGWMHNRS 352
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+S K L + W G ++FWDTL+DADL + LGWQ+ +GS D R+ +P +
Sbjct: 353 RMIVASLLTKNLRMHWLHGARWFWDTLVDADLASNTLGWQWTAGSGADAAPYFRIFNPVL 412
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG +FDP+G YVR+++PEL R+P IH P +AA L L YP PI+DL R
Sbjct: 413 QGERFDPDGRYVRRYVPELERVPASAIHTPRG---GRGRAADPALALGYPPPIVDLRESR 469
Query: 475 ERLTQAIFKM 484
+ +A ++
Sbjct: 470 QAALEAFRRL 479
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 270/477 (56%), Gaps = 15/477 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DNPAL AAAR G+ + +Y + G++ G SRWWL SL+ L
Sbjct: 5 AVVWFRNDLRLADNPALTAAARSGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTALAH 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L LG L L + + L ++ A V +N LY+P ++ RD IK +L G+
Sbjct: 65 DLARLGVTLTLRRGRAEFV-LENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRARGVM 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+NG LL+EP + +++G F F +W CL + P + LP + + AA +
Sbjct: 124 VESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEA-PDAPLPAPKKLTAAPPPASDA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D L + L W G A + L EF ++ + Y +R + S +S
Sbjct: 183 LADWRLLPTKPDWAGGLR-ETWRAGEHAALERLAEFAKKRVRDYKIDRDFMAREGVSRMS 241
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R++ WA+ G + LR +G RE+ +L P
Sbjct: 242 PHLHFGEVSPRRI----------WAEITEAAGDAGAAY-LREIGWREFCHHLLVANPQMP 290
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ER L + FPW D +AWR+G+TGYPLVDA MRELW TG +HNR R++ +SF VK
Sbjct: 291 ERALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVAASFLVK 350
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+PW+ G ++FWDTL+DADL + GWQ+++G D R+ +P +QG KFDPEG+
Sbjct: 351 HLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEKFDPEGD 410
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
Y+R+++PELAR+ IH PW+AP VL+AAGV LG YP+PI+D R+R +A
Sbjct: 411 YLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKARDRALKAF 467
>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
Length = 501
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 198/485 (40%), Positives = 277/485 (57%), Gaps = 33/485 (6%)
Query: 6 TIVWFRRDLRIEDNPAL-AAAARDGSVFPVYTW-----CPKEEGQ-------FYPGRVSR 52
T++WFR+DLR++DNPAL AA AR G V PVY W P EG PG SR
Sbjct: 4 TLLWFRQDLRLQDNPALHAALARGGPVIPVYVWEESCESPAAEGARANDGWAAQPGAASR 63
Query: 53 WWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
WWL SL L +++ G L+L + + LA L E + A A V +N Y+P + RD
Sbjct: 64 WWLHHSLEALDAAVRERGGRLILRRGDP-LAELQEIVRATGAKGVYWNRRYEPAARARDA 122
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR 172
++ +L G+ V+++N LL EP I +++G F F AYW CL + + LP
Sbjct: 123 RVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCLTLPVAAPRKLP--- 179
Query: 173 LVQAAGTIDGC-----SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
AG I S++ LE + + L + W+PG ++A K +T FV + R
Sbjct: 180 ----AGPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMTRFVAGAIDR 235
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEEN-FEGKESVTFFLRA 286
Y + R G + TS+LS LH+GE+S R+ LW ++E F FL
Sbjct: 236 YDEERDFPGCDGTSMLSAALHWGEISPRQ----LWAAVRGRSRESGVFPPSNGARIFLAE 291
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMREL 344
+G RE++ +L ++FP T E+PL F W D +AW++G+TGYP+VDAGMR+L
Sbjct: 292 LGWREFAYHLLWHFPHTIEQPLRRAFARFSWAEDPEGRRLRAWQRGQTGYPIVDAGMRQL 351
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
W TGW+HNR+R+IV+SF VK L L W G +FWDTL+DADL + LGWQ+ +G D
Sbjct: 352 WQTGWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWSAGCGADAA 411
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
R+ +P +QG KFD +G YVR+W+PELAR+P ++H PW A L AAGV LG NYP
Sbjct: 412 PYFRIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAGVRLGENYP 471
Query: 465 KPIID 469
+P++D
Sbjct: 472 RPVVD 476
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 273/479 (56%), Gaps = 8/479 (1%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDG--SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
R I+WFRRDLR+ DNPAL AA D S+ PVY P E G + PG R WL SL+
Sbjct: 4 RVIIWFRRDLRLADNPALRAALDDDFDSIVPVYIHAPHELGDWAPGAAQRVWLHDSLAAF 63
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+L++LG+ LV+ + ++T L I+ AT V +N LYDP+++ RD +K+ L +
Sbjct: 64 SDALEALGSRLVIRRGDTT-DVLDTLIAESGATSVYWNRLYDPLTIARDKKVKQHLADND 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I S+ LL+EPW + ++G + F +W K ++ + + P L + I
Sbjct: 123 IETASFKAHLLHEPWTVETKQGGPYKVFTPFW-KAIKNRAVDTPLAAPDALPEVWSRIGS 181
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
S+ L L + + + WSPG A + L F+ L Y + R + TS
Sbjct: 182 ESLASLELR--PKIGWDRGIRETWSPGEDGAHERLETFLADALKTYDEARDEPARPGTSY 239
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LH+GE+ R++ +++ L E + FL +G RE++ ++ ++FP
Sbjct: 240 LSPHLHWGEIGPRQIVHR--VEEWLDDHREIKTLRTQADSFLSEIGWREFAHHVLYHFPE 297
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
T + PL + K FPW D K W+QG+TG P+VDAGMRELWATG++HNR+R+ V+SF
Sbjct: 298 TPDEPLDARFKDFPWSGDDDALKRWQQGQTGIPMVDAGMRELWATGYMHNRLRMTVASFL 357
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K L + W+ G ++FW TL+DADL + LGWQ+ +G D R+ +P QG +FD +
Sbjct: 358 TKNLRVAWQHGERWFWGTLVDADLANNTLGWQWAAGCGADAAPFFRIFNPARQGERFDAK 417
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEYVR+W+PELA + IH PW+AP N LKAA + LG +YP+PI+DL R A
Sbjct: 418 GEYVRRWVPELADLDNRHIHEPWNAPANALKAANIVLGDDYPEPIVDLKASRREALAAF 476
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 267/479 (55%), Gaps = 18/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+I+WFR+DLR++DNPAL AA G + P+Y + PG S+WWL SL L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKWWLHHSLKSLN-- 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
K L L +FK + + + + + A+ + +N Y+P + RD +IK+ L++
Sbjct: 64 -KRLNGHLQIFKGDPQ-TLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSLLDSDYEA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYW-DKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
S+NG LL+EP ++ + G + F Y+ + CLQ++ PP R+ A +
Sbjct: 122 HSFNGSLLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEPRYPKAPPARITYADVDDNSDG 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L L + + + W+PG A L++F+E RY R TS LS
Sbjct: 182 LAALALLPTIKWDDT--IAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLREYSRYLCFNFPF 302
P+LHFGE+S Q+ +A ++ F E S+ +L +G RE+S YL F+FP
Sbjct: 240 PHLHFGEVSP---------NQVWYAIKDRFGTSEDKSIETYLSELGWREFSYYLLFHFPT 290
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ FPW D KAW+ G TG P+VDAGMRELW TG++HNR+R+IV SF
Sbjct: 291 LPNKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLL W G ++FWDTLLDADL + WQ+++GS D R+ +P +QG KFD +
Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 410
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
G YVRQ+ PEL + ++IH PW+AP +LK AGVELG +YPKPI+DL R+R A
Sbjct: 411 GGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAF 469
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 197/486 (40%), Positives = 266/486 (54%), Gaps = 23/486 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPALA AA G V + + +G G RWWL +L L
Sbjct: 12 ALVWFRDDLRVTDNPALARAAESGRPL-VCVYVFERDGTRPLGGAVRWWLDGALRSLDAK 70
Query: 66 LKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L + G LV+ + + T+AAL + A V +N YD ++ D ++K L E GI
Sbjct: 71 LAAQGGGLVVLEGDERETIAAL---AGELGAGAVYWNRRYDGLARETDAALKRSLKEAGI 127
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP--WRL--VQAAGT 179
V+S+NG LL+EPWEI G AF F AYW PA + P WR + A
Sbjct: 128 EVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPAKWRFHRLPEALA 187
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
I+ LGL + L W P L F+++ + Y R + +
Sbjct: 188 RRATRIDALGLLPVRPDWAGGLR-EAWEPSEEGGLARLEAFLDKQIRGYGDARDRPDRPA 246
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF----FLRAMGLREYSRY 295
TS LSPYL FG+LS R+V+ A+ EG +V FL +G RE++
Sbjct: 247 TSRLSPYLRFGQLSARQVWHA--------AQAAGREGGAAVAADIEKFLSELGWREFNTS 298
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L ++FP R PW +D F AW +GRTGYPLVDAGMRELWATGW+HNR+R
Sbjct: 299 LLYHFPELPMRNYRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWATGWMHNRVR 358
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ +SF +K LL+ WR G ++FWDTL+DAD+ + WQ+++GS D R+ +P +Q
Sbjct: 359 MVTASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYFRIFNPVMQ 418
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G KFDP+G YVR+W+PELA +P + IH PW A P VL+AAGV LG YP PI+D D R+
Sbjct: 419 GRKFDPDGAYVRRWVPELAGLPADAIHEPWRAKPVVLEAAGVVLGRTYPAPIVDHDAARK 478
Query: 476 RLTQAI 481
R A+
Sbjct: 479 RALGAL 484
>gi|430761658|ref|YP_007217515.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430011282|gb|AGA34034.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 489
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 188/490 (38%), Positives = 268/490 (54%), Gaps = 23/490 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T+VW RRDLR+ D PAL AA G+ V PV+ P+EE + PG S WWL SL+ L +
Sbjct: 4 TLVWLRRDLRLADQPALHAAVERGAPVIPVFVHAPEEETPWQPGAASNWWLHHSLARLSE 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G++L+L + TL L E + A V +N LY+P + RD IK L E G+
Sbjct: 64 ALERRGSQLIL-RRGPTLGTLRELVRDTGADAVFWNRLYEPALIPRDREIKHHLRESGLR 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+N LL+EPW I G+ + F +W C Q ++ + P + + + G
Sbjct: 123 VESFNAALLHEPWCIRSGSGNPYRVFSPFWKSCRQAGIDDTPLPEPQAIPAPSASTAGTQ 182
Query: 185 IEDLGLEDESEKSSNALLGR---------GWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
++ ALL R W+PG + A L +F+E RY+ R
Sbjct: 183 PRAARWPASEPLAALALLPRIRWDAGLAETWTPGEAGALVRLRDFLETSAERYHAMRDLP 242
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES-VTFFLRAMGLREYSR 294
G TS +SP+LHFGE+S R++ + L ++ F+ FL +G RE++
Sbjct: 243 GQPGTSRVSPHLHFGEISPRQIVRAL--------RDAGFDPDSGGADQFLSEIGWREFAH 294
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+L F+FP T PL + FPW + AW+QGRTG P+VDAGMRELW TGW+HNR
Sbjct: 295 HLLFHFPHTTGAPLNPRFEAFPWRESDRDLHAWQQGRTGIPIVDAGMRELWQTGWMHNRT 354
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+S K L + W G ++FWDTL+DADL + LGWQ+ +GS D R+ +P +
Sbjct: 355 RMIVASLLTKNLRMHWLHGARWFWDTLVDADLASNTLGWQWTAGSGADAAPYFRVFNPVL 414
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG +FDP+G YVR+++PEL R+P IH P L A L +YP PI+DL R
Sbjct: 415 QGERFDPDGCYVRRYVPELGRVPASAIHAPRAGRGRSLDPA---LMHDYPSPIVDLRQSR 471
Query: 475 ERLTQAIFKM 484
E +A ++
Sbjct: 472 EAALEAFRRL 481
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 265/479 (55%), Gaps = 18/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+I+WFR+DLR++DNPAL AA G + P+Y + PG S+WWL SL L
Sbjct: 6 SIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKWWLHHSLKSLN-- 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
K L L +FK + + + + + A+ + +N Y+P + RD +IK+ L+
Sbjct: 64 -KRLNGHLQIFKGDPQ-TLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSLLGSDYEA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYW-DKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
S+NG L+EP ++ + G + F Y+ + CLQ++ PP R+ A +D S
Sbjct: 122 HSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEPRYPKAPPARITYA--DVDDNS 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
L + + + W+PG A L++F+E RY R TS LS
Sbjct: 180 DGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLREYSRYLCFNFPF 302
P+LHFGE+S Q+ +A ++ F E S+ +L +G RE+S YL F+FP
Sbjct: 240 PHLHFGEVSP---------NQVWYAIKDRFGTSEDKSIETYLSELGWREFSYYLLFHFPT 290
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ FPW D KAW+ G TG P+VDAGMRELW TG++HNR+R+IV SF
Sbjct: 291 LPNKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LLL W G ++FWDTLLDADL + WQ+++GS D R+ +P +QG KFD +
Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 410
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
G YVRQ+ PEL + ++IH PW+AP +LK AGVELG +YPKPI+DL R+R A
Sbjct: 411 GGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAF 469
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 193/473 (40%), Positives = 257/473 (54%), Gaps = 18/473 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
N +VWFRRDLR+ DNPAL AA V PVY P+EE + PG SRWWL QSLS L
Sbjct: 5 NAALVWFRRDLRLTDNPALIAALTSHADVVPVYLHAPEEEAPWQPGAASRWWLHQSLSQL 64
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
QSL+ G+ L++ + TL +LL A V +N L DP RD I L G
Sbjct: 65 EQSLRERGSRLII-RLGPTLESLLALCQETGAAAVYWNRLVDPAVRRRDAQIVRALESCG 123
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTID 181
I + G LL++P + + F F ++ CL ++ P + P P RL + I
Sbjct: 124 IRPLVFEGGLLFDPARLKTSQDRPFRRFTPFYRACL-LKGLPTDVQPAPPRLPKVPPGI- 181
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ LE L + W PG + A L F L Y R + +TS
Sbjct: 182 -ATVPLAALELMPRIGWYRGLAQTWRPGEAGALARLEAFRSGPLAEYASLRDRPDLPATS 240
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+LHFGE+S ++V + S FLR + RE+S +L ++FP
Sbjct: 241 RLSPHLHFGEISPKQVAASI------------LASGHSGEAFLRELIWREFSHHLLYHFP 288
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+PL FPW AW+QG+TG PLVDAGMRELWATGW+HNRIR++ +SF
Sbjct: 289 KLPGQPLDQRFHAFPWRVAKDALAAWQQGQTGIPLVDAGMRELWATGWMHNRIRMVAASF 348
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+ W+ G ++FWDTL+DADL + WQ+++G D R+ +P +QG KFDP
Sbjct: 349 LVKNLLISWQEGARWFWDTLVDADLANNSQNWQWVAGCGADAAPFFRIFNPVLQGRKFDP 408
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
G Y+R+W+PELA +P IH PW+A P L+ GVELG NYP PI+DL R
Sbjct: 409 LGNYIRRWVPELASLPACLIHAPWEADPTELRRYGVELGRNYPHPILDLATSR 461
>gi|410621442|ref|ZP_11332289.1| deoxyribodipyrimidine photo-lyase [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158957|dbj|GAC27663.1| deoxyribodipyrimidine photo-lyase [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 481
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 193/488 (39%), Positives = 275/488 (56%), Gaps = 18/488 (3%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + IVWFR+DLR+ DNPAL+ A +G++ PV+ G S+WWL SL
Sbjct: 4 MSSKKIIVWFRQDLRLTDNPALSLAVDNGTIIPVFILDDDAPENAALGGASQWWLHHSLL 63
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +SL + +L + LA L+E A A V++N LY+P RD +IK L
Sbjct: 64 SLSKSLNTK----LLIRRGEPLAILIEIAEAFSADSVIWNRLYEPWQRERDENIKTVLKN 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAG- 178
GI+ +S NG LL+EP + + + F Y+ K CL Q I P + A G
Sbjct: 120 RGIAAKSLNGSLLWEPMSVLKKDETPYKVFTPYYRKGCLTRQAPRFPIARPKEIQIADGV 179
Query: 179 --TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
++D + L + E K A W PG A L F+ + Y R
Sbjct: 180 NFSMDALTSLQLIPKTEWYKDIEA----QWQPGEEGAANRLQRFISEAATSYQDARNMPA 235
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
TSLLSP+LHFGE+S + + I A E F+ K+ + +L +G RE+S YL
Sbjct: 236 VKGTSLLSPHLHFGEVSPNQAWYA-----IQGAFENAFDNKD-LDVYLSELGWREFSYYL 289
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
F++P + + +F W + + KAW+ G TG P++DAGMREL+ TG++HNR+R+
Sbjct: 290 LFHWPEIQHKNFNAKFDFFQWRSSPDDLKAWQFGNTGVPMIDAGMRELYQTGYMHNRVRM 349
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+V SF VK LL+ WR G ++FWDTLLDAD+ + GWQ+++GS D R+ +P +QG
Sbjct: 350 VVGSFLVKNLLIDWREGERWFWDTLLDADMASNSAGWQWVAGSGADAAPFFRIFNPILQG 409
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGEYV+++ PEL R+P ++IH PW+APP +LKA GVELG NYP PI+DL L R+R
Sbjct: 410 EKFDKEGEYVKKYCPELKRLPKQFIHKPWEAPPEILKACGVELGKNYPNPIVDLKLSRKR 469
Query: 477 LTQAIFKM 484
A+ ++
Sbjct: 470 ALDALAQL 477
>gi|333893079|ref|YP_004466954.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
Length = 474
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 190/487 (39%), Positives = 275/487 (56%), Gaps = 31/487 (6%)
Query: 8 VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLK 67
+WFR+DLR++DNPAL AA +G + P+Y + G S WWL SL+ L L
Sbjct: 1 MWFRQDLRVKDNPALNAACDEGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDRL- 59
Query: 68 SLGAELVLFKTE--STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L +FK + + + AL+E A +A + +N Y+P + RD +IK++L++
Sbjct: 60 --NGHLKVFKGDPKALIPALME---AYEAKGIYWNRCYEPWQINRDKAIKKQLLDNDYEA 114
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQA-------A 177
S NG LL+EP ++ + G + F Y+ K CL ++ PP R+ A
Sbjct: 115 HSSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVEPPRYPQAPPARITYADVDDSKIT 174
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
C+I+DL L S+ W PG A L F+ QH R YK+ + +
Sbjct: 175 KANHSCNIDDLNLLPSLGWDSD--FKNHWKPGEDGAADNLQYFI-QHAARKYKDARDIPS 231
Query: 238 -NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLREYSR 294
N TS LSP+LHFGE+S Q+ +A ++ FE E S+ +L +G RE+S
Sbjct: 232 MNGTSHLSPHLHFGEVSP---------NQVWYAIKDRFETSEDKSIDTYLSELGWREFSY 282
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
YL ++FP + F W +D + KAW+ G+TG P+VDAGMRELW TG++HNR+
Sbjct: 283 YLLYHFPTIPTKNFNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRV 342
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV SF VK LL+ W+ G ++FWD L+DADL + GWQ+++G+ D R+ +P +
Sbjct: 343 RMIVGSFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLL 402
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG KFD +G+YVR++ PELA +P ++IH PWDAPP + K AGV LG YPKPI+DL R
Sbjct: 403 QGEKFDKQGKYVRKYCPELADLPDKYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASR 462
Query: 475 ERLTQAI 481
+R A
Sbjct: 463 QRALDAF 469
>gi|410615205|ref|ZP_11326231.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
gi|410165289|dbj|GAC40120.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
Length = 484
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 188/486 (38%), Positives = 278/486 (57%), Gaps = 31/486 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVY---TWCPKEEGQFYPGRVSRWWLKQSLSYL 62
T+VWFR+DLR+ DNPAL A+ G V P+Y T CP+ F PG S+WWL QSLS L
Sbjct: 8 TLVWFRQDLRLRDNPALTYASERGLVIPLYISDTDCPE---HFVPGSASKWWLHQSLSSL 64
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL +L K +++ L+E I VV+N Y+P + RD +K L+E G
Sbjct: 65 NDSL---NGQLHCLKGDAS-KLLIEFIQLHDIKSVVWNRSYEPWQIKRDTQLKHALIEAG 120
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTID 181
I+VQS+N LL+EPW++ + + F Y+ + CL + P L I+
Sbjct: 121 INVQSFNSHLLWEPWQVLKKDETPYKVFTPYYRRGCLSKASPRMPVEVPKNL-----QIE 175
Query: 182 GCSIEDLGL---EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
D GL E + + + + + W+PG A L++F+ Y R
Sbjct: 176 YFPESDKGLDSLELMPDINWHGTIEKMWTPGEQGAANHLSDFLPDGAKEYKNKRDFPDLG 235
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE---SVTFFLRAMGLREYSRY 295
+TS LS +LHFGE+S Q+ +A ++ G + +L +G RE+S
Sbjct: 236 ATSKLSAHLHFGEISP---------NQVWYAAIDSLNGNTEDVGLDCYLSELGWREFSHS 286
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L F+FP ++ ++FPW D + KAW+ G+TG P+VDAGMRELW TG +HNR+R
Sbjct: 287 LLFHFPHIPQKNFSPKFEHFPWRTDDNSLKAWQLGQTGIPIVDAGMRELWQTGTMHNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V SF VK LL+ WR G ++FWD LLDADL + WQ+I+G+ D R+ +P Q
Sbjct: 347 MVVGSFLVKNLLIDWRKGERWFWDCLLDADLAANSASWQWIAGTGADAAPYFRIFNPVTQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G +FDP+G+YV+++ PEL+++P ++IH+PWDAP N+L AG++LG NYP+P++DL + R
Sbjct: 407 GQRFDPKGDYVKRYCPELSKLPDKFIHNPWDAPQNILNYAGIKLGDNYPRPLVDLKISRL 466
Query: 476 RLTQAI 481
R A+
Sbjct: 467 RALDAL 472
>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
Length = 479
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 194/482 (40%), Positives = 273/482 (56%), Gaps = 12/482 (2%)
Query: 3 GNRTIVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
G+ T+VW RRDLR+ DNPAL AA R G V VY P+E Q+ PG S W+L SL
Sbjct: 2 GDATLVWLRRDLRLTDNPALDQAARRGGPVIAVYLHAPEETPQYPPGAASHWYLHHSLKA 61
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
LG +L G LVL + + LA L I A A V +N LY+P ++ RD ++K+ L
Sbjct: 62 LGPALAQAGIPLVLRRGPA-LATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRTE 120
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
G+ +S+ LL+EPW + ++ + F +W C + A + P + ++
Sbjct: 121 GLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAVE 180
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G + LGL + + L W G S A L F L RY ++R + TS
Sbjct: 181 GLDLAALGLLPRTPWDTG--LRNTWQAGESAALARLEAFAADRLARYAQDRDRPAEPGTS 238
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP LHFGELS R+V+ Q++ A+E +++ FL +G RE++ +L ++ P
Sbjct: 239 GLSPALHFGELSPRQVWW-----QVMAAREAGVP-EDACETFLSELGWREFAHHLLWSHP 292
Query: 302 FTHERPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+ P+ FPW D G+ AW+ GRTG PLVDAGM ELW TGW+HNR+R++
Sbjct: 293 DLGDAPVDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVTG 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK L LPW+ G ++F DTL+D D + +GWQ+++G D R+ +P QG +F
Sbjct: 353 SFLVKHLRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGERF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G YVR+WLP LA +P ++IH PW AP VL+ AGV LG +YP P+IDL LGRE+
Sbjct: 413 DPQGRYVRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDLRLGREQALS 472
Query: 480 AI 481
A
Sbjct: 473 AF 474
>gi|389695632|ref|ZP_10183274.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
gi|388584438|gb|EIM24733.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
Length = 492
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 194/496 (39%), Positives = 278/496 (56%), Gaps = 20/496 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR D R+ DNPALAAAA GS + + G +RWWL SL LG+S
Sbjct: 9 VLVWFRDDHRLADNPALAAAAATGSQVLCFAVIGGSDDLRPLGGAARWWLHGSLRALGES 68
Query: 66 LKSLGAELVLFKTESTLAALLECIS-AIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ GA L LF E +++E ++ A+ + +N Y + D ++K++L + GI
Sbjct: 69 LEQAGASLALF--EGPAPSVVERVARETGASAIFWNRRYGAAEIALDTAVKKRLTDSGIK 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA-------A 177
S+NG LL+EPW+I ++ G F F Y + ++ A++ PP R+ A
Sbjct: 127 AHSFNGRLLHEPWDIVNQAGRPFQVFTPYLRTVMTRGLK-AALAPPKRIPGGIWPSSLLA 185
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
TI +E+LGLE S + L W PG A K F+ + L Y +NR +
Sbjct: 186 STI---PLEELGLEPSSPDWAGGLR-TAWRPGEEAARKSFRHFLSKGLRGYAENRDRPSL 241
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP+L FGE+S R+++ + Q+ E+ +L + R++S L
Sbjct: 242 IGTSRLSPHLRFGEISPRQIWHAV-TAQV----AEHPSLARDAEKYLSEIVWRDFSHQLL 296
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
P R S FPW D KAWR+GRTGYP+VDAGMR+LW TGW+HNR+R+I
Sbjct: 297 HFHPHLPVRSHSSRFDAFPWIDDPKTLKAWRRGRTGYPIVDAGMRQLWQTGWMHNRVRMI 356
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL WR G +FWDTL+DAD + WQ+++GS PD R+ +P QG
Sbjct: 357 TASFLVKHLLTDWRKGEAWFWDTLVDADPANNAFSWQWVAGSGPDSAPFHRIFNPVTQGE 416
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFDP+G+YVR ++PELA +P+ ++HHPWDAPP VL+ AG+ LG YP+PI+ L RER
Sbjct: 417 KFDPDGDYVRTFVPELAGLPSTFLHHPWDAPPAVLQEAGISLGETYPEPIVVHGLARERA 476
Query: 478 TQAIFKMWEMEAADNA 493
Q + +E+ +++
Sbjct: 477 LQTFRSLRGLESEEHS 492
>gi|389878514|ref|YP_006372079.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
gi|388529298|gb|AFK54495.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
Length = 489
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 261/477 (54%), Gaps = 12/477 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTW---CPKEEGQFYP---GRVSRWWLKQSL 59
IVWFR+DLRI DNPAL A+R GS + VY P + P G +RWWL +SL
Sbjct: 7 IVWFRQDLRIADNPALHRASRSGSRLVCVYVHEDDDPAHDDVPAPRPLGGAARWWLHRSL 66
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L L+++G L+L K + + I A V+ N +YDP RD +I E+L
Sbjct: 67 LALDADLRAIGGRLLLLKGPAA-REIPALARRIGAGAVLINRVYDPEGAARDRAIGERLK 125
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
GI + +N LL+EPW I + G + F +W P + P RL
Sbjct: 126 ADGIHMAGHNALLLHEPWTIETKTGGPYQVFTPFWRAARDKGEIPPPLAAPDRLDLVEDA 185
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+G + L L + + + W+PG + A L F+ + L Y +R + G +
Sbjct: 186 PEGVPLAALDLLPRIDWAGG--IAASWTPGSAGARDRLAGFLNRALTGYKPDRDRPAGET 243
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FGE+ R V+ + + A+ + S FL +G RE+S +L +
Sbjct: 244 TSRLSPHLRFGEIGPRTVWHA--VHHAIEAQGLTGPARASADTFLTELGWREFSYHLLHH 301
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP R L L FPW D AW++GRTGYP+VDAGMR+LW TGW+HNR+R++V+
Sbjct: 302 FPHLPARDLKETLTGFPWREDAAALDAWQRGRTGYPIVDAGMRQLWHTGWMHNRVRMVVA 361
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK L++ W+ G +FWDTL+DAD + WQ+ +G+ D R+ +P +QG +F
Sbjct: 362 SFLVKHLMIWWKPGEAWFWDTLVDADPASNTASWQWSAGTGADAAPYFRIFNPVLQGERF 421
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D +G YVR+W+PELA++P ++H PW AP +VL AG+ G YP PI+D D RER
Sbjct: 422 DGDGAYVRRWVPELAKLPDRYLHKPWTAPASVLATAGIRPGQTYPAPIVDHDQARER 478
>gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
Length = 469
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 267/477 (55%), Gaps = 22/477 (4%)
Query: 6 TIVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T+VW R+DLR+ D PAL AA R G+V PV+ P E+ Q+ PG S WWL SL L +
Sbjct: 5 TLVWLRQDLRLADQPALHAAVERGGAVIPVFIHAPDEDLQWPPGAASNWWLHHSLQSLNE 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G+ LV+ + +L L E ++ AT V +N +Y+P ++RD IK L G+
Sbjct: 65 ALNKAGSPLVV-RAGPSLDTLRELVAETGATAVYWNRVYEPARVLRDQGIKAGLRADGLD 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+N LL EPW++ +G + F +W CLQ +E + P RL
Sbjct: 124 VRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQNPLPAPSRLPAPGKPPRSLM 183
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++DL L + + L W+PG A L F+EQ + Y +R + + TS LS
Sbjct: 184 LDDLELLPPIDWAGG--LRATWTPGERGARDRLERFLEQAIAGYADSRDRPDQDGTSRLS 241
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R+V + L + + +G ES F+R +G R+++ ++ ++FP T
Sbjct: 242 PHLHFGEVSPRQVLRALRDAGV----SLDHKGPES---FVRELGWRDFAHHVLYHFPHTT 294
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
E+PL + FPW + AW+QGRTG P+VDA MR+LW TGW+HNR+R++V SF K
Sbjct: 295 EQPLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVGSFLTK 354
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L L W G ++FWDTL+DADL + LGWQ+ G D R+ +P+ QG ++DP+G
Sbjct: 355 NLRLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQYDPDGR 414
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+VR +LP L + T +IH P AG G YP PI+DL R+ +A
Sbjct: 415 FVRSFLPVLKKTETRYIHAP---------GAGGTPG--YPDPIVDLKASRQAALEAF 460
>gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group]
gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group]
Length = 334
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 169/291 (58%), Positives = 202/291 (69%), Gaps = 13/291 (4%)
Query: 320 DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWD 379
D FK+WRQG TGYPLVDAGMRELWATGW HNRIRVI+SSFAVK LL+PW WGMKYFWD
Sbjct: 25 DEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWD 84
Query: 380 TLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTE 439
LLDADLE DILGWQYISGSLPDGHEL RLD+PE+QG K+DP+G YVR W+PELARMPTE
Sbjct: 85 VLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTE 144
Query: 440 WIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGT 499
WIHHPWDAP +L+ AGVELG NYPKPI+DL + RE L +I MW+++ A+ + +G
Sbjct: 145 WIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEKLAELDG- 203
Query: 500 NEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPSFQNGKNNLPSRKRPKNVEEER 559
EVV DN I+T IP+VVLRE S C DQ+VP + +NL S K K
Sbjct: 204 -EVVEDNLSNIKTFDIPKVVLRETSPCAL--PIDQRVPHASSKDHNLKS-KVLKASNRSS 259
Query: 560 QYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQTTTNISFSVPHSFSLSE 610
D + S K EA + S A S +++++ +F VP S +E
Sbjct: 260 ICVDMIRSSKMEATS--------SVANSPVSRKRSFCETAFHVPSYSSSAE 302
>gi|410633828|ref|ZP_11344468.1| deoxyribodipyrimidine photo-lyase [Glaciecola arctica BSs20135]
gi|410146488|dbj|GAC21335.1| deoxyribodipyrimidine photo-lyase [Glaciecola arctica BSs20135]
Length = 486
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 190/486 (39%), Positives = 279/486 (57%), Gaps = 27/486 (5%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVY---TWCPKEEGQFYPGRVSRWWLKQSLS 60
+ T+VWFR+DLR+ DNPALA AA+ SV PV+ T CP+ PG S+WWL QSL+
Sbjct: 6 DSTLVWFRQDLRLRDNPALAFAAKLDSVIPVFIFDTACPE---HCVPGGASKWWLHQSLN 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL + +L K +++ L+ + ++ +N Y+P + RD +K+ LV
Sbjct: 63 ALNDSLDN---QLHCIKGDAS-KLLIGLMQKHDIKRIAWNRAYEPWQIKRDTQLKQTLVA 118
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRL-VQAAG 178
GI VQS+N LL+EPW++ + + F Y+ + CL + P L ++
Sbjct: 119 AGIEVQSFNSHLLWEPWQVLKKDQTPYKVFTPYYRRGCLSKSSPRMPVAAPKDLQIEYYS 178
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
ID I+ L L E S ++ + W+PG A + L+EF+ Y R
Sbjct: 179 EIDN-GIDSLELM--PEISWHSTIQTMWTPGEKGAAQHLSEFLPDGAKEYKNKRDFPELG 235
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE---SVTFFLRAMGLREYSRY 295
+TS LSP+LHFGE+S QI +A G + +L +G RE+S Y
Sbjct: 236 ATSKLSPHLHFGEISP---------NQIWYAGINALNGNTEDIGLDCYLSELGWREFSHY 286
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L F+FP ++ ++F W D + KAW+ G+TG P+VDAGMRELW TG +HNR+R
Sbjct: 287 LLFHFPHIPQKNFSPKFEHFIWRNDEDSLKAWQLGQTGIPIVDAGMRELWQTGTMHNRVR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V+SF VK LL+ WR G ++FWD LLDADL + WQ+++G+ D R+ +P Q
Sbjct: 347 MVVASFLVKNLLIDWRKGERWFWDCLLDADLAANSASWQWVAGTGADASPYFRIFNPVTQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G +FD G+YV+++ PEL++MP ++IH+PWDAP N+L AGV+LG NYPKP++DL R
Sbjct: 407 GQRFDVHGDYVKRYCPELSKMPDKFIHNPWDAPQNILDYAGVKLGDNYPKPLVDLKASRL 466
Query: 476 RLTQAI 481
R A+
Sbjct: 467 RALDAL 472
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 192/488 (39%), Positives = 266/488 (54%), Gaps = 18/488 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
N IVWFR DLR+ DN ALAAA + G + VY G G +RWWL SL L
Sbjct: 8 NTAIVWFRDDLRLADNEALAAALSTGGPLLCVYILEDGTAGFRPLGGAARWWLHHSLQAL 67
Query: 63 GQSLKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
GQ + + G L LF E+ L AL E A A + + Y + D ++K +
Sbjct: 68 GQDIAAKGGRLDLFCGEARRILPALAE---AAGARIICWTRRYGGPEMAVDAALKAQFKT 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA--- 177
G+ +S+NG LL+EPW+I GH F + YW + P RL A
Sbjct: 125 SGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAPDRLPAAPIPR 184
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G + SIE L L E + L W PG + A + L F+E + Y R +
Sbjct: 185 GALRTTSIEALALLPEKPDWAGGLRA-AWRPGENGAQERLKAFLEGEIASYSLERNRPSA 243
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
++ S LSP+L FGE+ R++F + + W +N K V F L +G RE++ +L
Sbjct: 244 DAVSRLSPHLRFGEIGPRQIFAAV---RTAW---DNAAQKGGVKF-LAELGWREFNYHLS 296
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
F P + + PW AW++G TGYPL+DAGMRELWATG++HNR+R+
Sbjct: 297 FYHPDAARQNIQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWATGYMHNRVRM 356
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+V+SF +K LL+ WR G +FWDTL DAD + + WQ+++GS D R+ +P +QG
Sbjct: 357 VVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPYFRIFNPVLQG 416
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD G+YVR+W+PELA++P +WIH P+ APP +L+ AGVELG NYP+PI+DL GR R
Sbjct: 417 EKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIVDLAEGRAR 476
Query: 477 LTQAIFKM 484
A K+
Sbjct: 477 ALAAFEKV 484
>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
Length = 476
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 181/487 (37%), Positives = 275/487 (56%), Gaps = 17/487 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ I+ F++D R+ DNPAL AA+ G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIMMFQKDFRLYDNPALFEAAQSGEVVPVYV----QDETFSIGSASKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-NTQEEILSLIEQLNITAVYWNSCYDPDRLKSNQKMKIVLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I R+ +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQRIKGGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W+P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--IESIWNPTEEGAYKTCKKFFFSKLASYSEGRDFPNENAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNF 300
+PYL FG++SVR WM L K + ++ V F+R + RE+S YL +++
Sbjct: 235 APYLSFGQISVR------WMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHY 288
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT +PL N ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+S
Sbjct: 289 PFTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVAS 348
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 349 FLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+GEY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 409 KDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCA 468
Query: 481 IFKMWEM 487
M E
Sbjct: 469 YKSMKEF 475
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/484 (36%), Positives = 277/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +TL +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLETLGSTLIIRKG-NTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VNKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
Length = 476
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 273/473 (57%), Gaps = 11/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPVYV----HDETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T+ +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARER 464
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/473 (36%), Positives = 275/473 (58%), Gaps = 11/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T+ +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + +YFPW+ + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARER 464
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 194/482 (40%), Positives = 270/482 (56%), Gaps = 16/482 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DNPAL AAA G+ V PVY G + PG SRWWL SL+ L
Sbjct: 8 VIVWFRQDLRLADNPALQAAAATGAPVIPVYILDDDAPGDWRPGGASRWWLHHSLASLAS 67
Query: 65 SLKSLGAELVLFKTEST--LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L+ LG EL L K E+ L AL+E A V +N LY+P + RD +IK L + G
Sbjct: 68 DLQQLGGELALMKGEAQEQLDALIEQTGA---DTVFWNRLYEPWARKRDEAIKSSLKDRG 124
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+ +S+NG L+ EPW+I + G+ + F +W K L+ PA +Q +G
Sbjct: 125 VRARSFNGSLIVEPWDIATKTGNPYKVFTPFW-KSLKADHTPAEPTGRPDALQLHAH-EG 182
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
D ++ + L W+PG + A L +F++ + Y R G + TS
Sbjct: 183 GLSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSGTSR 242
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+S R+V+ + K+ + +L + RE+S L ++FP
Sbjct: 243 LSPHLHFGEISPRQVWHAV--------KQSDHARTGGADTYLSEIAWREFSYNLLYHFPD 294
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
E S F W KAW++G+TGYP+VDAGMRELWATGW+HNR+R+IV+SF
Sbjct: 295 LPEANFQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFL 354
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K L + WR G +FWDTL+DADL + WQ+ +GS D R+ +P Q KFDP+
Sbjct: 355 IKDLFIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPK 414
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
G+Y+R+W+PELA +P + IH PW A +VL AGV LG YP+PI+D R+R A
Sbjct: 415 GDYLRKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFE 474
Query: 483 KM 484
K+
Sbjct: 475 KI 476
>gi|423551107|ref|ZP_17527434.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
gi|401188440|gb|EJQ95508.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
Length = 476
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 273/473 (57%), Gaps = 11/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPVYV----HDETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T+ +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTILWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARER 464
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 276/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +TL +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/484 (36%), Positives = 276/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K ++ +F K+ ++F +R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKST--ERQCSFFEKQVISF-IRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 AYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKN 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
Length = 484
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 186/466 (39%), Positives = 262/466 (56%), Gaps = 11/466 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+V FRRDLR+ D+PAL+AAA G+ V PVY + G++ G SRWWL QSL LG
Sbjct: 10 ALVLFRRDLRLADHPALSAAAETGAPVLPVYILDDETPGRWRMGGASRWWLYQSLRSLGA 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL E T L E I A V+F Y+P + +K L G+S
Sbjct: 70 DLEARGSRLVLRHGE-TKRVLGELIEETGARSVLFTRGYEPYQRALEGRLKPSLEARGVS 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGC 183
++ + G +L EP I + G F F ++ + L + PA+ LP P +L
Sbjct: 129 LRRFGGQILVEPESIANLAGEPFRVFTPFF-RALSQRGAPATPLPAPQKLAAPDSWPRSD 187
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++ L LE + + W PG + A + LT F+E L Y R + G + TS L
Sbjct: 188 ALASLALEPTRPDWAGGIRA-AWRPGETAARERLTAFIEAALPSYRTRRDEPGIDGTSRL 246
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L FGE+ R+++ + E + +LR +G RE+S +L F+FP
Sbjct: 247 SPHLAFGEIGPRQIWHAVQAAA------EAAGDHAAADAYLREVGWREFSYHLLFHFPHL 300
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
E P FPW D +AW++GRTGYP+VDAGMR+LW TGW+HNR+R+IV+SF +
Sbjct: 301 PEAPFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQLWQTGWMHNRVRMIVASFLI 360
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL PW+ G +FWDTL+DADL + WQ+++GS D R+ +P +QG KFDP G
Sbjct: 361 KHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKFDPRG 420
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+YVR ++PELA++P IH PW A L+ AGV LG +P PI+D
Sbjct: 421 DYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWPHPIVD 466
>gi|328544427|ref|YP_004304536.1| deoxyribodipyrimidine photolyase family protein [Polymorphum gilvum
SL003B-26A1]
gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
SL003B-26A1]
Length = 480
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 193/465 (41%), Positives = 261/465 (56%), Gaps = 14/465 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
T+VWFR+DLRI DNPAL AA GSV PV+ +P G SRWWL SL L +
Sbjct: 3 TLVWFRQDLRIADNPALFEAAARGSVLPVFVLDEGPGDNTHPLGAASRWWLHHSLEALAR 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L L ++L L + E A V +N Y+P ++ RD ++K L+ G+
Sbjct: 63 DLGRL---VLLHGDPQRL--IPELARAAGVGAVHWNRCYEPHAVRRDTALKAALIAAGVE 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+N LL EPWE+ + G F F YW L + PP RL AAG G
Sbjct: 118 VRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPP-RLEIAAGQA-GDR 175
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++D L + + W PG + A + L F+E L Y R + + S LS
Sbjct: 176 LDDWRLRPTAPDWAAGWRDL-WHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSHVSRLS 234
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R+V + + +A + FL +G RE+S +L ++FP
Sbjct: 235 PHLHFGEVSPRQV-----VARTRFAAGRTPGLERDADKFLAEIGWREFSHHLLYHFPRLP 289
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ER S +PW G+ W++G+TGYP+VDAGMRELWATG++HNR+R++ +SF VK
Sbjct: 290 ERNWKSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAASFLVK 349
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L L WR G +F DTL+DADL + GWQ+++GS D R+ SP QG +FDP G
Sbjct: 350 HLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRFDPGGA 409
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
YVR+W PELAR+P + +H P+DAP VLKAAGVELG YP PI+D
Sbjct: 410 YVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVD 454
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 276/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL+ ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K ++ +F K+ ++F +R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKST--ERQCSFFEKQVISF-IRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
RPL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYRPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|423458833|ref|ZP_17435630.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
gi|401145461|gb|EJQ52985.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
Length = 476
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 182/487 (37%), Positives = 271/487 (55%), Gaps = 17/487 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +TL +L I + T V +N YDP L + +K L E GI
Sbjct: 59 KQLEALGSTLIIRKG-NTLEEILSLIEQLGITAVYWNICYDPDRLQCNQKMKIMLEEKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q P I R+ +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQEIPKPISKVQRIKGGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--IESIWEPTEEGAYKACKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNF 300
+PYL FG++SVR WM L K + ++ V F+R RE+S YL +++
Sbjct: 235 APYLSFGQISVR------WMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHY 288
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT +PL + ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+S
Sbjct: 289 PFTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVAS 348
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 349 FLVKHLLIPWQEGAKWFLDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
GEY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 409 KNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCA 468
Query: 481 IFKMWEM 487
M E
Sbjct: 469 YKSMKEF 475
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 177/484 (36%), Positives = 276/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K ++ +F K+ ++F +R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKST--ERQCSFFEKQVISF-IRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 325 bits (832), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 187/481 (38%), Positives = 266/481 (55%), Gaps = 15/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DNPA AA GS + PV+ G + G SRWWL SLS L
Sbjct: 6 VILWFRQDLRLQDNPAYHAALESGSPILPVFILDDDNAGLWKRGAASRWWLYHSLSSLN- 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
KSL L +F+ ++T + E + A A V +N Y+P + RD IK L + I+
Sbjct: 65 --KSLNGTLAIFRGDAT-KIIPELVEAACAHAVFWNRCYEPWRIARDSKIKTALEQSSIA 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTI-DG 182
V+S N LLYEPW + + G + F ++ K CL P + P + +
Sbjct: 122 VKSSNASLLYEPWTVSKDDGTPYKVFTPFFRKGCLGRGEPPVPLGLPHHVPTFFPRLKQS 181
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
I+DL L + W+PG A + L +F++ L Y + R + S
Sbjct: 182 LHIDDLDLLPSIKWDKG--FHDIWTPGEHGARERLGQFLDHGLKGYKEGRNHPDRENVSR 239
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+S R + + A E + + FL +G RE+S L + P
Sbjct: 240 LSPHLHFGEISPRTAWHA-----VRHAMEADPTIETDGDCFLSELGWREFSYSLLYTHPD 294
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+PL FPW + +AW+ G+TGYP+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 295 LPTQPLQHKFAGFPWDKNDKALRAWQMGKTGYPIVDAGMRQLWQTGWMHNRVRMIVASFL 354
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K L+LPW G ++FWDTL+DADL + WQ+++G D R+ +P QG+KFDP+
Sbjct: 355 IKDLMLPWTAGEEWFWDTLVDADLANNAASWQWVAGCGADAAPYFRIFNPVTQGTKFDPD 414
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
G Y+R ++PELA +P ++IH PW AP NVLK AGVE+G YP PI+D R+ A+F
Sbjct: 415 GNYIRTFVPELAALPAKYIHEPWTAPANVLKQAGVEMGKTYPMPIVDHKAARDH-ALAVF 473
Query: 483 K 483
K
Sbjct: 474 K 474
>gi|374623477|ref|ZP_09695986.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
gi|373942587|gb|EHQ53132.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
Length = 485
Score = 325 bits (832), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 187/492 (38%), Positives = 268/492 (54%), Gaps = 33/492 (6%)
Query: 18 DNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLF 76
DNPALA A R G V PVY P+EE + PG SRWWL SL+ +L + G+ L+L
Sbjct: 16 DNPALAHALRSGHPVIPVYIHAPEEEASWSPGAASRWWLHHSLTAFSSALDAAGSRLILR 75
Query: 77 KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEP 136
+ S L LL+ I A +V++N +Y+P + RD IK L + G++V+S+N LL+EP
Sbjct: 76 RGPS-LETLLQLIDETGARQVLWNRVYEPALIERDRRIKAALKDRGLAVESFNSALLFEP 134
Query: 137 WEIYDERGHAFTTFDAYWDKCLQM------QMEPASILPPWRLVQAAGTIDGCSIEDLGL 190
W + ++ G + F +W C M + P SI P R D DL
Sbjct: 135 WTVSNKSGEPYRVFTPFWKACCAMGLPDDVETTPESITAPTRWPDN----DRLEFFDLLP 190
Query: 191 EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFG 250
++ A W PG A + L F+ +L Y +R G TS +SP+LHFG
Sbjct: 191 RIPWDQGMAAC----WQPGEDGAHRALERFLAGAVLTYKTDRDLPGQPGTSRMSPHLHFG 246
Query: 251 ELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLS 310
E+ R++ + + L A+ SV F+R +G RE++ +L F+FP T E+PL
Sbjct: 247 EIGPRQLIRAC---RYLQAQGAGATAGASVETFVREIGWREFAFHLLFHFPHTPEQPLDE 303
Query: 311 NLKYFPWHAD---LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLL 367
FPW + +AWR+GRTG PLVDAGMRELW TGW+HNR+R+IV+S VK L
Sbjct: 304 RFTDFPWRDARDYAADLEAWRRGRTGIPLVDAGMRELWHTGWMHNRVRMIVASLLVKNLR 363
Query: 368 LPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVR 427
+PW+ G ++FWDTL+DADL + LGWQ+ +G D R+ +P +QG +FD GEYVR
Sbjct: 364 IPWQTGARWFWDTLVDADLASNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDGRGEYVR 423
Query: 428 QWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEM 487
+W+PEL +P ++ PW AP ++ YP+P +DL R +A WE
Sbjct: 424 RWVPELKPLPDRYLQAPWTAPAGLVPR-------EYPRPRVDLGESR----KAALAAWEQ 472
Query: 488 EAADNAMDSNGT 499
+ +++GT
Sbjct: 473 LKGASRSEASGT 484
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 325 bits (832), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 173/473 (36%), Positives = 273/473 (57%), Gaps = 11/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T+ +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F ++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYH-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARER 464
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 324 bits (831), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 276/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K + L +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKVMYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|386828473|ref|ZP_10115580.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
gi|386429357|gb|EIJ43185.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
Length = 477
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 184/466 (39%), Positives = 263/466 (56%), Gaps = 21/466 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFRRDLR++DNPAL A DG + P+Y P EEGQ+ G SRWWL SL+ Q
Sbjct: 5 LVWFRRDLRLQDNPALMQAVADGHQIIPIYIHAPTEEGQWQVGSASRWWLHHSLTAFAQQ 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
+ +L F+ ES L+ L + I +A V +N LY+P + RD IK+ L G+ V
Sbjct: 65 WQEKQGQLFCFQGES-LSTLQQVIVQTQAVAVYWNRLYEPAMIQRDSQIKQCLKAQGLMV 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-PASILPPWRLVQAAGTIDGCS 184
+S+N LL+EP ++ +++ + F +W Q+ + P S L V ++ S
Sbjct: 124 KSFNASLLHEPAQVLNKQESPYRVFTPFWKTSQQLAISLPLSQLET-ICVPNNFKLETIS 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ-KLGGNSTSLL 243
I L L + S + W G +A +L ++ EQ ++ Y R S S L
Sbjct: 183 INKLQLLPKITWDSG--FYQTWQVGEVHAQHLLNQWCEQAMMEYATQRDFPANPVSVSHL 240
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYLHFGELS R+VF IL A+ N +LR + RE++ YL ++FP T
Sbjct: 241 SPYLHFGELSPRQVFHA-----ILKAQALNPAITTGGNAYLRQLYWREFAHYLLYHFPHT 295
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
E+ L S FP+ + AW++G TGYP++DAGMRELW TGW+HNR+R++V+SF
Sbjct: 296 PEKALYSQFDNFPYQENTELLMAWQRGETGYPIIDAGMRELWTTGWMHNRVRMLVASFLT 355
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLLPW+ G ++FWDTL+DADL + LGWQ+++G D R+ +P +Q KFDP+G
Sbjct: 356 KNLLLPWQTGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYYRIFNPTLQSVKFDPDG 415
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+Y+R+WLP L + + IH P D N + G YP PI+D
Sbjct: 416 QYIRRWLPVLKYLDNQQIHAPTD---NGQRIQG------YPCPIVD 452
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 276/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K + L +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKVMYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/487 (36%), Positives = 272/487 (55%), Gaps = 17/487 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L+++G+ L++ K + L +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEAVGSTLIIRKG-NILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ P I R+
Sbjct: 118 TCKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQIVPKPISKVQRIKGGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +++ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIRWTTH--MESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNF 300
+PYL FG++SV+ WM L K + ++ V F+R + RE+S YL +++
Sbjct: 235 APYLSFGQISVK------WMYHYLIDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHY 288
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT +PL N ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+S
Sbjct: 289 PFTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVAS 348
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 349 FLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
GEY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 409 KNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCA 468
Query: 481 IFKMWEM 487
M E
Sbjct: 469 YKSMKEF 475
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 277/484 (57%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K ++ +F K+ ++F +R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKST--ERQCSFFEKQVISF-IRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P+++ RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARERALCAYKS 471
Query: 484 MWEM 487
M E+
Sbjct: 472 MKEL 475
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 180/487 (36%), Positives = 273/487 (56%), Gaps = 17/487 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFKATQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L I + T V +N YDP L + ++K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-STEEEILSLIEQLGITAVYWNICYDPDRLQFNQNMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + + +
Sbjct: 118 TCKEFNSHLLLEPWMIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPESL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVTELHLLPTIPWTSH--IESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNF 300
+PYL FG++SVR WM L K + ++ V F+R + RE+S YL +++
Sbjct: 235 APYLSFGQISVR------WMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHY 288
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT +PL N ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+S
Sbjct: 289 PFTVYKPLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVAS 348
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 349 FLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+GEY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 409 KDGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCA 468
Query: 481 IFKMWEM 487
M E
Sbjct: 469 YKSMKEF 475
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDEDFLMGEASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--IESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 267/474 (56%), Gaps = 22/474 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DNPA + A + ++ P+Y + ++ G+ WWL SL LG+
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHETIIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K S L +LE ++ V +N Y+P + RD IK L E GI
Sbjct: 61 SLNQQGLSLVLRKG-SPLEIILELVTQYGLESVYWNRCYEPQVIARDKKIKLALGEKGIK 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+NG+LL+EPW I ++ G F F YW +C Q+ P+ P+ L + I+ S
Sbjct: 120 VHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS----PFMLTKRPRGIEITS 175
Query: 185 IEDLG-LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+DLG + + A W+PG A K L EFV HL Y + R N+TS L
Sbjct: 176 -DDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFPAKNATSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + L + AK E S+ FL +G RE+S YL ++FP
Sbjct: 235 SPHLHFGEISPWVILRALEL-----AKLEQTCDLASLEHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW D W++G TGYP++DAGMRELWATG++HNR+R+IV+SF
Sbjct: 290 DCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 349
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 350 KDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDG 409
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA A+ + LG YPKPIID R +
Sbjct: 410 VYIRQWIPELAQLNSQSIHQPWTDA-----NASSIFLGKKYPKPIIDHQEARTK 458
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ I F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIAMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDEDFLMGEASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--IESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A +ELG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 264/467 (56%), Gaps = 13/467 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGR----VSRWWLKQSLSYL 62
IVWFR DLR+ D+PAL AA+ G+ V + EEG GR SRWWL QSL L
Sbjct: 10 IVWFRDDLRLSDHPALHDAAQSGAPL-VCLYVLDEEGSPQHGRPIGSASRWWLAQSLRSL 68
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL + G L L + + + I+A+ V +N P + + L +G
Sbjct: 69 QGSLTARGQSLTLRRGRPA-RVIADLAQEIRASAVHWNESDIPGEAATEREVTTALDRIG 127
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
++ +S+ DLL P ++ ++ G F +W + L + +P LP + + A I
Sbjct: 128 VASRSFPSDLLVRPEKLRNKEGRGLRVFTPFWKRVLSLG-DPPQPLPAPKALTAGPKIAT 186
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
+ LE ++ L W+PG + A K L +F++ + Y R + ++TS
Sbjct: 187 DDLASWNLEPTRPDWASGLR-ETWTPGEAAAQKRLKDFLDNDIASYASLRDRPDRDATSR 245
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+L FGE+S R+V+ +A SV FL +G RE+SR+L F+ P
Sbjct: 246 LSPHLRFGEISPRQVWHS-----ASFAAAGKPAISSSVAKFLSELGWREFSRHLLFDHPQ 300
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
ER L S+ FPWH+D +AW++G+TGYP+VDAGMRELW TG +HNR+R++V+SF
Sbjct: 301 LAERNLQSSFDAFPWHSDPKALRAWQRGQTGYPIVDAGMRELWHTGIMHNRVRMVVASFL 360
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
VK LL+ WR G K+FWDTL+DAD + WQ+++GS D R+ +P +QG KFDP+
Sbjct: 361 VKHLLIDWRDGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPILQGEKFDPD 420
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
G YV +W+PELAR+P + IH PW+A P L AAGV LG YP+PI+D
Sbjct: 421 GAYVSKWVPELARLPAKLIHQPWEATPMELAAAGVTLGKTYPEPIVD 467
>gi|374292340|ref|YP_005039375.1| deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
gi|357424279|emb|CBS87146.1| Deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
Length = 494
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 195/487 (40%), Positives = 264/487 (54%), Gaps = 20/487 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAA-----RDGSVFPVYTWCPKEEGQFYP------GR 49
M + IVWFR DLR+ DNPAL AAA R V P+Y +EE P G
Sbjct: 1 MSASPIIVWFRNDLRLADNPALTAAAQASAERGAPVIPLYIL--EEETGDPPCDPWPLGG 58
Query: 50 VSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLV 109
RWWL SL L G+ L+L + E A L I+ A V++N Y P
Sbjct: 59 AQRWWLHGSLERLATCCARHGSPLLLRRGEPG-AVLDALIAETGAECVLWNRRYTPAQTA 117
Query: 110 RDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP 169
RD +IKE+L GI +S+N LL EPW + ++ G F F +W P
Sbjct: 118 RDAAIKERLKARGIDARSFNAGLLAEPWTVRNKSGGPFKVFTPFWRHLSATLNPPLPTRA 177
Query: 170 PWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYY 229
P L A G +++ GL + L R W PG + A L +F++ + Y
Sbjct: 178 PSALKAPAKAPAGDALDSWGLLPTKPDWAAGLRKR-WVPGETAALSHLADFLDGPVGAYA 236
Query: 230 KNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGL 289
R + + TS LSPYL FGE+ R+V+ + E + FLR +G
Sbjct: 237 TERDRPDRDGTSALSPYLAFGEIGPRQVWHAARHAA-----DARPELAPGIDSFLREVGW 291
Query: 290 REYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
RE+ +L + P +RPL FPW D AW++GRTGYP+VDAGMR+LW TGW
Sbjct: 292 REFQYHLLHHAPELPDRPLDPRFADFPWREDAAGLLAWQRGRTGYPIVDAGMRQLWETGW 351
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R+IV+SF VK LLLPW+ G ++FWDTL+DADL + WQ+++G D R+
Sbjct: 352 MHNRVRMIVASFLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRV 411
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P +QG KFDPEG+YVR+++PEL R+P WIH PW AP +L+ AGV LG +YP+PIID
Sbjct: 412 FNPVLQGEKFDPEGDYVRRYVPELDRLPPRWIHQPWAAPTELLRQAGVRLGDDYPRPIID 471
Query: 470 LDLGRER 476
+ R+R
Sbjct: 472 HGVARDR 478
>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 476
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 272/473 (57%), Gaps = 11/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T+ +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NTMEEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F ++ Q Q+ I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYH-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARER 464
>gi|374619940|ref|ZP_09692474.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
gi|374303167|gb|EHQ57351.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
Length = 481
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 268/480 (55%), Gaps = 21/480 (4%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+ TIV FR+DLR+ D+PAL AAA+ G+V PV+ + G + G SRWWLKQSL LG
Sbjct: 2 STTIVLFRQDLRLHDHPALTAAAQRGAVIPVFVLDDEACGDWVMGGASRWWLKQSLLNLG 61
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
++ G EL+L + + TL AL++ S A + F+ Y P S + +I + E +
Sbjct: 62 STIAQSGGELILRRGD-TLTALIDIQSQSGADAIYFSRQYQPWSAAMEKAINDAFNEDDV 120
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP----W-RLVQAAG 178
V+ Y G LL+EP + G F F +W L++ + A+ LP W V AA
Sbjct: 121 EVKRYPGTLLHEPGSVLTGSGTGFKVFTPFWRAALKLPV--ATPLPSPAVNWSNAVPAAE 178
Query: 179 TIDGCSI---EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
++ + ED G+ D + + W PG A L F++ + Y + R
Sbjct: 179 DLNSWVLDPAEDAGVPDWAAGWEDI-----WEPGEDGAHNALEAFLDAPVAHYSEGRDLP 233
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
TS LSP+L FGE+S R+V+ +++ E ++ FL +G RE+
Sbjct: 234 ARRYTSRLSPHLKFGEISPRQVWASAQQRKL-----SAPEWTSAIDKFLAEIGWREFCYQ 288
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L F +RP FPW + KAW++G TGYP+VDAGMRELW TG++HNR+R
Sbjct: 289 LIDLFDAMPDRPFKDQFAGFPWDNSEEHLKAWQRGMTGYPIVDAGMRELWQTGFMHNRVR 348
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K LL+ W G ++FWD LLDAD+ + WQ+++GS D R+ +P Q
Sbjct: 349 MIVASFLTKHLLVHWLEGERWFWDCLLDADIASNACSWQWVAGSGADAAPYFRIFNPIAQ 408
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G KFDPEGEYV++W PELA MP +++H PW+AP L +AGVELG YP+PI+D R+
Sbjct: 409 GQKFDPEGEYVKRWCPELADMPKKFVHAPWEAPAMTLASAGVELGKTYPEPIVDHKTARQ 468
>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 478
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 271/483 (56%), Gaps = 11/483 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ + +
Sbjct: 6 KIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAIIDVQK 61
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK+LG+ ++ + T +L I + T V +N YDP L + +K L + GI
Sbjct: 62 QLKALGSTFII-RNGKTQEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGII 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ +N LL EPW I + + F +++ Q Q+ P I + + S
Sbjct: 121 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQSIKWGSSLPASLS 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ +L L +S+ + W P A K +F L Y + R N+ S+L+
Sbjct: 180 VSELHLLPTIPWTSH--IESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 237
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 238 PYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 294
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF VK
Sbjct: 295 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK 354
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD GE
Sbjct: 355 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 414
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y+R+W+PEL +P ++IH PW+AP ++L+ A +ELG YP P++D RER A M
Sbjct: 415 YIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALCAYKSM 474
Query: 485 WEM 487
E+
Sbjct: 475 KEL 477
>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
Length = 476
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 273/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL+ ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKN 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|423562452|ref|ZP_17538728.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
gi|401200617|gb|EJR07502.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
Length = 476
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--IESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWKTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
Length = 476
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 267/476 (56%), Gaps = 17/476 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-NTQEEILSLIEQLGITAVYWNICYDPERLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I R+
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQRIKGGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSKLHLLPTIPWTSH--IESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNF 300
+PYL FG++SVR WM L K + ++ V F+R RE+S YL +++
Sbjct: 235 APYLSFGQISVR------WMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHY 288
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT +PL + ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+S
Sbjct: 289 PFTVYKPLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVAS 348
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 349 FLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+GEY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP PI+D RER
Sbjct: 409 KDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARER 464
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--IESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|407775677|ref|ZP_11122970.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
gi|407281354|gb|EKF06917.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
Length = 492
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 190/491 (38%), Positives = 273/491 (55%), Gaps = 22/491 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
++WFR DLR+ DNPAL AA + DG+V PV+ Q G ++WWL++SL+
Sbjct: 7 AVMWFRNDLRLADNPALLAAVKWAKENDGAVLPVFILDDVISDQL--GGATKWWLEKSLT 64
Query: 61 YLGQSLKSLG-----AELVLFKTESTLAALLECISAIKATKVVF-NHLYDPVSLVRDHSI 114
L +++ LG L LFK + +LE I+ K+ K VF N LYD S RD I
Sbjct: 65 ALNRNIADLGDTKSDRALRLFKGNAK--TVLETIADDKSVKAVFWNRLYDKPSTKRDTEI 122
Query: 115 KEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV 174
K L G++ +S+ +LL+EPW++ F + +W CL++ P L
Sbjct: 123 KAALQNHGLTCESHKANLLFEPWDVKTGSDTDFKVYSPFWRACLKLPTPREPKSAPESLA 182
Query: 175 QAAGTID-GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
G +D +I D L + + L R +SPG A L +F++ L Y R
Sbjct: 183 LFKGEVDEQINIADFDLSPKPVNWAGGLEER-FSPGEQGAKDQLFDFIDDRLTDYADLRD 241
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LSP+L FGE+S +V W +A +GK + + F+ +G RE++
Sbjct: 242 RPDRRVTSELSPHLRFGEISPYQV----WHAANHYADANPGKGK-TASKFIAELGWREFA 296
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ ++ PL K+FPW D +AW++G+TG+P+VDAGMRELW TG++HNR
Sbjct: 297 HHILYHATDLRSVPLQGQFKHFPWSDDAKGLRAWQKGQTGFPIVDAGMRELWHTGYMHNR 356
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV S VK LL+ WR G+ +F DTL+DA + WQ+I G D R+ +P
Sbjct: 357 VRMIVGSILVKHLLIHWRDGLAWFDDTLVDACPANNPFSWQWIGGCGADAAPYFRIFNPV 416
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
+QG KFDP+GEYVRQW+PEL MP ++IH PW+A P +LKAA V LG YP+P+I L G
Sbjct: 417 LQGEKFDPKGEYVRQWVPELRDMPEQYIHKPWEASPLILKAADVTLGKTYPEPLIGLKEG 476
Query: 474 RERLTQAIFKM 484
RER +A M
Sbjct: 477 RERALEAYQDM 487
>gi|423436667|ref|ZP_17413648.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
gi|401122403|gb|EJQ30190.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
Length = 476
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL+ ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + + FPW + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKN 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
Length = 475
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 192/493 (38%), Positives = 268/493 (54%), Gaps = 34/493 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL+AA G V P+Y K +F G SRWWL SL+
Sbjct: 1 MNKPLVIHWFRQDLRLSDNPALSAAVSQGDVLPIYILDDKNANEFAMGGASRWWLHHSLT 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL A L L+K E L LLE I + T VV+N Y+P + RD IK+ L E
Sbjct: 61 ALDASLT---ACLNLYKGEP-LEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTLKE 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILP------PWRL 173
+GI VQSYN LL+EPW+I G A+ F ++ K CL+ +M P LP +
Sbjct: 117 IGIQVQSYNASLLWEPWQIKKPDGTAYKVFTPFYRKGCLKAEM-PRQPLPRPDNQAVYLK 175
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
+DG ++ DE K W G A +F+E+ L Y + R
Sbjct: 176 DDKGQALDGLNLLPTIAWDEPFKDL-------WQIGEDKAQSQFFKFLEEGLASYKEGRN 228
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ LSP++HFGE+S + LW ++ E V F +G RE+S
Sbjct: 229 IPSKPFVTRLSPHIHFGEISPNQ----------LWYGVQSVADNEHVDHFCSELGWREFS 278
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGN-----FKAWRQGRTGYPLVDAGMRELWATG 348
F P L S FPW + + +AW+QG+TG P+VDAGMRELW TG
Sbjct: 279 YSQLFVNPSLPTHNLQSKFDAFPWREEDTSSKDSLLRAWQQGKTGIPMVDAGMRELWQTG 338
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
++HNR+R+IV+SF VK L + W G ++FWDTLLDADL + WQ+++G D R
Sbjct: 339 YMHNRVRMIVASFLVKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFR 398
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
+ +P +QG +FD EG+Y+++++PE++ +P +++ PW+AP VL+ AGV+LG YP+PII
Sbjct: 399 IFNPVVQGQRFDAEGDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPII 458
Query: 469 DLDLGRERLTQAI 481
DL RE +A
Sbjct: 459 DLKASREAALEAF 471
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 195/498 (39%), Positives = 259/498 (52%), Gaps = 29/498 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR D R+ DNPAL A G V VY P PG RWWL +SL L
Sbjct: 23 VVVWFRDDQRLADNPALEYATATGHPVVCVYVHDPAPRNTRPPGAAGRWWLHESLRALNA 82
Query: 65 SLKSLGAEL-VLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+L +LG EL VL +ES A+ AI A KV +N Y D +IK L E GI
Sbjct: 83 ALVALGGELTVLHGSESQ--AIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKERGI 140
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRL--------V 174
+V ++NG LL EPW + G F F AYW + + Q P + P P R+ +
Sbjct: 141 AVFTFNGHLLREPWAVATRDGRPFQVFSAYW-RAARHQYSPEAPQPAPQRINFFPVPDNI 199
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
A ++ S L L+ + ++ L W G L F+ L RY R
Sbjct: 200 GVAARVENLSA--LALQPRTPDWASGLR-ETWQCGEQAGQTQLDAFLANALTRYASGRDV 256
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAK--------EENFEGKESVTFFLRA 286
+TS LSPYL FG LS R+V W + A+ V FL
Sbjct: 257 PAMQATSRLSPYLRFGNLSARQV----WHAALSAARVGRHCGDARRTCTASSGVDKFLDE 312
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+G RE+S YL ++ H+ PW AD + +AW+ GRTGYPLVDAGMRELW
Sbjct: 313 LGWREFSYYLLYHCAPLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWH 372
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TGW+HNR+R++ +SF VK LL+ WR G +FWDTL+DAD + WQ+++GS D
Sbjct: 373 TGWMHNRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPY 432
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
R+ +P +QG KFDP+G YVR+W+PELAR+P+ +H PW A P L +A V LG +YP P
Sbjct: 433 FRIFNPVLQGQKFDPQGAYVRRWVPELARVPSGCVHAPWLAQPAQLASASVRLGQDYPLP 492
Query: 467 IIDLDLGRERLTQAIFKM 484
++ RER +A+ M
Sbjct: 493 VVPHQQARERALKAMEHM 510
>gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula]
Length = 177
Score = 321 bits (823), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 152/177 (85%), Positives = 163/177 (92%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++TIVWFRRDLRIEDNPALAAAARDG VFPV+ WCPKEEGQFYPGRVSRWWLKQSL+
Sbjct: 1 MDRSKTIVWFRRDLRIEDNPALAAAARDGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+LGQSLKSLGAELVL KT ST+ ALL+CI I AT+VVFNHLYDPVSLVRDH+IKEKLVE
Sbjct: 61 HLGQSLKSLGAELVLIKTHSTVVALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKLVE 120
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
LGISVQSYNGDLLYEPWEIYDERG+AFTTF+AYWDKCL MQMEP S LPPWRLV AA
Sbjct: 121 LGISVQSYNGDLLYEPWEIYDERGYAFTTFEAYWDKCLHMQMEPVSHLPPWRLVPAA 177
>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425266|ref|ZP_17402297.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|423506140|ref|ZP_17482730.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449089482|ref|YP_007421923.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112481|gb|EJQ20359.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|402449071|gb|EJV80909.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449023239|gb|AGE78402.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 321 bits (823), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPINRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + ++ ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQSSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDEAFSMGEASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T A+L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEAILSLIEKLDITAVYWNICYDPDRLKSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL E W I + + F +++ Q Q+ P + + +
Sbjct: 118 ICKEFNSHLLLESWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPVSKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--IESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PF
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFA 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ +I+GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|407705549|ref|YP_006829134.1| hypothetical protein MC28_2313 [Bacillus thuringiensis MC28]
gi|407383234|gb|AFU13735.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis MC28]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/486 (36%), Positives = 274/486 (56%), Gaps = 15/486 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+ L++LG+ L++ K TE + +L+E ++ T V +N YDP L + +K L +
Sbjct: 59 KQLEALGSTLIIRKGRTEEEIRSLIE---QLRITAVYWNICYDPDRLQSNQKMKMMLEDK 115
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GI + +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQIIPKPISKVQSIKGGNSLPA 174
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
S+ +L L +S+ + W P A K +F L Y + R N+ S
Sbjct: 175 SLSVSELHLLPTIPWTSH--IESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHS 232
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
+L+PYL FG++SVR ++ L K + + ++ V F+R + RE+S YL +++P
Sbjct: 233 MLAPYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FT +PL + ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+SF
Sbjct: 290 FTVYKPLNKSFEHFPWNNEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469
Query: 482 FKMWEM 487
M E
Sbjct: 470 KSMKEF 475
>gi|402556671|ref|YP_006597942.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
gi|401797881|gb|AFQ11740.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 268/473 (56%), Gaps = 11/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LGA ++ K + T +L I + T V +N Y+P L + +K L + GI
Sbjct: 59 KQLKALGATFIIRKGK-TQEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q P + +
Sbjct: 118 ICKEFNSHLLLEPWMIKKKDNTEYKVFTPFYN-AFQKQAIPKPTSKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L + + + W+P A K +F L Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTYH--MESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFPNQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K +++ ++ V F+R RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER
Sbjct: 412 EYIRKWIPELRDMPNKYIHKPWEAPEHILQKANIQLGNTYPLPVVDHKAARER 464
>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/484 (36%), Positives = 270/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL+ ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + + FPW + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL+ +P ++IH PW+AP ++L+ A ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|410634949|ref|ZP_11345574.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
gi|410145523|dbj|GAC12779.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 195/505 (38%), Positives = 270/505 (53%), Gaps = 41/505 (8%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++I+WFR+DLR+ DNPAL AA +G V PVY F PG S+WWL QSL
Sbjct: 1 MSKAKSIMWFRQDLRLRDNPALCAACANGDVIPVYILDEHNAQSFSPGAASKWWLHQSLL 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
SL + +E + + + L I AT VV+N Y+P + RD +KE+L +
Sbjct: 61 ----SLNASLSEKLHVMRGNPIDVLNNIIEQTGATHVVWNRCYEPWQIHRDKELKEQLKQ 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGT 179
I V+S+NG LL+EPW I ++ G + F ++ K CLQ P R V +A
Sbjct: 117 RNIQVESFNGSLLWEPWTIMNQSGSPYKVFTPFYRKGCLQA--------PSPRSVTSA-P 167
Query: 180 IDGCSIEDLGLEDESEKSSNAL--------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
I + + L DE S N + + W PG A L+EF+ Q + Y +
Sbjct: 168 IQASYVYESAL-DEGIDSLNLMPDIPWYEQMQAHWQPGEEGAGIALSEFLNQSINDYKQA 226
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES---VTFFLRAMG 288
R N TS LSP+LHFGE+S QI +A F G + + FL +G
Sbjct: 227 RDVPSLNGTSHLSPHLHFGEISPH---------QIWYATLHKFNGSMANADMDCFLSEIG 277
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
RE+S YL ++FP + W + +AW++G+TG P+VDAGMRELW TG
Sbjct: 278 WREFSYYLLYHFPTLPSENFNPKFNQYHWRGRNNDLEAWQRGQTGVPIVDAGMRELWQTG 337
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
++HNR+R+IV S+ VK L W G +FWD LLDADL + WQ+++GS D R
Sbjct: 338 YMHNRVRMIVGSYLVKNLKTHWHHGESWFWDCLLDADLAANSASWQWVAGSGADASPFFR 397
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
+ +P QG KFD EGEYVR++ PEL +P ++IH PWDAP +VL A + LG +YP P++
Sbjct: 398 IFNPVTQGEKFDSEGEYVRRYCPELQNLPNKYIHKPWDAPEDVLIEANIRLGQDYPHPLV 457
Query: 469 DLDLGRERLTQAIFKMWEMEAADNA 493
DL R++ A EA NA
Sbjct: 458 DLKESRQQALDA------YEAVKNA 476
>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L + + T V +N YDP L + +K L + G+
Sbjct: 59 KQLEALGSTLIIRKG-STQEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPVSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K EF L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
Length = 477
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 185/482 (38%), Positives = 270/482 (56%), Gaps = 26/482 (5%)
Query: 8 VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLK 67
+WFR+DLR+ DNPAL AA G + PVY + GQ+ G SRWWL +L+ L SLK
Sbjct: 1 MWFRQDLRLADNPALCAACERGEIIPVYILDDQGAGQWKMGGASRWWLHFALADLNASLK 60
Query: 68 SLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQS 127
L +++ ++ L L + A VV+N Y+P + RD +IK L E G+ VQS
Sbjct: 61 QC---LQIYQGDA-LTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESGLDVQS 116
Query: 128 YNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
+NG LL+EPW++ + G + F Y+ + CL + PP L + D ++
Sbjct: 117 FNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPPKTLKVFVDSGDSLELD 176
Query: 187 DLGLE-----DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+L L DES K+ W + A L EFV L Y + R + S
Sbjct: 177 NLNLLPKIAWDESMKAC-------WDISEAAAHARLDEFVMNELQDYREGRNFPAKQNVS 229
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENF-EGKESVTFFLRAMGLREYSRYLCFNF 300
LSPYLHFG++S W + A+ F ++S+ F+ +G RE+S YL +++
Sbjct: 230 RLSPYLHFGQISPNSA----WYRA---AEAGAFINNEQSLDTFMSELGWREFSYYLLYHW 282
Query: 301 PFTHERPLLSNLKYFPWHADLG-NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P L + FPW + + AW+QG+TGYPLVDAGMREL++TG++HNR+R++V
Sbjct: 283 PKLPTENLQTRFDLFPWANNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVVG 342
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ W G ++FWD L+DADL + WQ+I+G D R+ +P Q KF
Sbjct: 343 SFLVKNLLIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEKF 402
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G Y+R+++PEL MP ++IH PW AP VL AGV +G+NYP+P++D+ + R R +
Sbjct: 403 DKQGSYIRRYVPELKDMPEKYIHAPWLAPAEVLAVAGVNIGINYPEPVVDIKVSRARALE 462
Query: 480 AI 481
A
Sbjct: 463 AF 464
>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|384187171|ref|YP_005573067.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675484|ref|YP_006927855.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452199537|ref|YP_007479618.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174613|gb|AFV18918.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452104930|gb|AGG01870.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY +E F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QEETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 ICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
RPL + + FPW+ + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYRPLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
Length = 476
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L I + T V +N YDP L + +K L + G+
Sbjct: 59 KQLEALGSTLIIRKG-STEEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPSSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S Y+ +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF +
Sbjct: 292 AYKPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
Length = 476
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L + + T V +N YDP L + +K L + G+
Sbjct: 59 KQLEALGSTLIIRKG-STQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPVSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K EF L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|194334030|ref|YP_002015890.1| deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
Length = 477
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 189/481 (39%), Positives = 264/481 (54%), Gaps = 17/481 (3%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+EDNPAL AA +G V PVY G + G +R WL SL
Sbjct: 1 MKRKTVICWFRQDLRLEDNPALFVAAEEGYVLPVYILDDSSPGTWQMGSATRCWLHHSLV 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +S +L +F+ E L L KA K+V+N Y+P + RD IK L
Sbjct: 61 SLN---RSFDGKLGIFRGEP-LEILKTLARQHKAEKIVWNRCYEPWRMKRDQGIKATLQA 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGT 179
GI V S+NG LL+EP E+ + + F ++ + + P + LP P R++ A
Sbjct: 117 EGIEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRMLMADTI 176
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ S++DL L S L WS G ++A + L F++Q L Y + R G N
Sbjct: 177 DNSISVQDLNLLPSIPWDSQ--LISHWSVGENSARQSLLRFLDQGLNGYKEGRDFPGQNH 234
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S LSP LHFGELS V W + + + + FL +G RE++ L ++
Sbjct: 235 VSRLSPALHFGELSPNTV----------WYEAKRCGSGQDLDHFLSELGWREFAYTLLYH 284
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
E+ L S FPW + W+QG TGYPLVDAGMRELW TG++HNR+R+I
Sbjct: 285 NHDMPEKNLQSAFDAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRVRMITG 344
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LLL W +G ++F D LLDADL + GWQ+I+G D R+ +P QG KF
Sbjct: 345 SFLVKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVRQGEKF 404
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G Y +++PELA++P +++ +PW+AP N+L+ AG+ LG YP+PI+DL + R R
Sbjct: 405 DPDGTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISRNRALS 464
Query: 480 A 480
A
Sbjct: 465 A 465
>gi|423655980|ref|ZP_17631279.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
gi|401292211|gb|EJR97875.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
Length = 476
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY +E F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QEETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R G N S+L
Sbjct: 177 SVSELQLLPTIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 274/477 (57%), Gaps = 11/477 (2%)
Query: 10 FRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSL 69
F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ + + L++L
Sbjct: 2 FQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQLEAL 57
Query: 70 GAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129
G+ L++ K +T+ +L I + T V +N YDP L + +K L + GI+ + +N
Sbjct: 58 GSTLIIRKG-NTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCKEFN 116
Query: 130 GDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLG 189
LL EPW I + + F +++ Q Q+ I + + S+ +L
Sbjct: 117 SHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASLSVSELH 175
Query: 190 LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHF 249
L +S+ + W P A K +F L+ Y + R N+ S+L+PYL F
Sbjct: 176 LLPTIPWTSH--MESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLAPYLSF 233
Query: 250 GELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309
G++SV+ ++ L K +++ ++ V F+R RE+S YL +++PFT +PL
Sbjct: 234 GQISVKLMYHYLINKS---NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLN 290
Query: 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLP 369
+ +YFPW+ + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF VK LL+P
Sbjct: 291 KSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIP 350
Query: 370 WRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
W+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +GEY+R+W
Sbjct: 351 WQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKW 410
Query: 430 LPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486
+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A M E
Sbjct: 411 VPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 467
>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
A2012]
gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CDC 684]
gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A1055]
gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Kruger B]
gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Vollum]
gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Australia 94]
gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase [Bacillus anthracis str. Ames]
gi|386736907|ref|YP_006210088.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|421510721|ref|ZP_15957609.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|421636758|ref|ZP_16077356.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
gi|384386759|gb|AFH84420.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|401819244|gb|EJT18426.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|403395554|gb|EJY92792.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
Length = 476
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 270/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L + + T V +N YDP L + +K L G+
Sbjct: 59 KQLEALGSTLIIRKG-STQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPVSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K EF L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|376267016|ref|YP_005119728.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|364512816|gb|AEW56215.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
Length = 476
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L I + T V +N YDP L + +K L + G+
Sbjct: 59 KQLEALGSTLIIRKG-STEEEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPSSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S Y+ +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF +
Sbjct: 292 AYKPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 276/483 (57%), Gaps = 11/483 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V P+Y + + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T+ +L I + T V +N YDP L + +K L + GI
Sbjct: 59 RQLEALGSTLIIRKG-NTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + +N LL EPW I + + F +++ Q Q+ I + +
Sbjct: 118 TCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVISKPISKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K +++ ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---NEKQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWE 486
M E
Sbjct: 472 MKE 474
>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
Length = 476
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGSSLPTSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL F ++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFSQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP PI+D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
Length = 476
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 268/473 (56%), Gaps = 11/473 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ I+ F++D R+ DNPAL AA+ G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIMMFQKDFRLYDNPALFEAAQSGEVVPVYV----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LGA ++ K + T +L I + T V +N Y+P L + +K L + GI
Sbjct: 59 KQLKALGATFIIRKGK-TQEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q P + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQAIPKPTSKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W+P A K +F L Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFPNQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + ++ ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQSSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD +G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EY+R+W+PEL +P ++IH PW+AP +L+ A ++LG YP P++D RER
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARER 464
>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 476
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 270/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L + + T V +N YDP L + +K L G+
Sbjct: 59 KQLEALGSTLIIRKG-STQEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPVSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K EF L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 275/476 (57%), Gaps = 15/476 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TI WFR+DLR+ DNPAL AA+ + P+Y ++ G RWWL SLS L
Sbjct: 3 TIFWFRQDLRLSDNPALVEAAKSADHLIPLYI---LDDQLKMLGDAQRWWLHHSLSSLQT 59
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L K T LLE I K K+ +N Y+P D ++ +L L S
Sbjct: 60 ALSKKGTSLIL-KKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPPL--S 116
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+ Y+ LL EP +I ++ G + F +W K + ++P L + I +
Sbjct: 117 VEIYHSTLLTEPQKIKNKSGGYYKIFTPFW-KHINASLQPRKTLAAPKKFSQHRAIKSDN 175
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E L + S W PG NA VL +F++++L Y +R + +STS LS
Sbjct: 176 LETWNLLPKHPDWSQGF--DQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHLS 233
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYLHFGE+S+R+V+ + I +++N + V FLR + RE++ YL ++FP
Sbjct: 234 PYLHFGEISIRQVWTAITQATI---QDKNLQKAADV--FLRQLIWREFAYYLLWHFPQMG 288
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ F W + +AW++G TGYP+VDAGMRELW TG++HNR+R+IV+SF VK
Sbjct: 289 RSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L++ WR G K+FW+TLLDADL + LGWQ+I+G PD R+ +P +Q KFDP+G
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+++W+PELA++P+++IH+P D P N+ +++ V LG++YP PI++ +E +A
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKA 464
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 267/474 (56%), Gaps = 22/474 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DNPA + A + V P+Y + ++ G+ WWL SL LG+
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHYSLIALGK 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K S +LE ++ V +N Y+P + RD IK LVE I
Sbjct: 61 SLNQQGLSLVLRKG-SPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALVEREIK 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS+NG+LL+EPW I ++ G F F YW +C Q+ P+ P+ L + I+ S
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS----PFILTKRPRGIEIAS 175
Query: 185 IEDLG-LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+D+G + + A W PG A K L EF+ HL Y ++R N+TS L
Sbjct: 176 -DDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + L + AK E+ SV FL +G RE+S YL ++FP
Sbjct: 235 SPHLHFGEISPWVILRALEL-----AKLEHTCDLASVEHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW D W++G TGYP++DAGMRELWATG++HNR+R+IV+SF
Sbjct: 290 DCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 349
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 350 KDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDG 409
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA A+ + LG YPKPIID R +
Sbjct: 410 VYIRQWIPELAQLNSQSIHQPWTDA-----DASSIFLGKKYPKPIIDHQEARTK 458
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 267/474 (56%), Gaps = 22/474 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DNPA + A + V P+Y + ++ G+ WWL SL LG+
Sbjct: 5 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHYSLIALGK 61
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K S +LE ++ V +N Y+P + RD IK LVE I
Sbjct: 62 SLNQQGLSLVLRKG-SPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALVEREIK 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS+NG+LL+EPW I ++ G F F YW +C Q+ P+ P+ L + I+ S
Sbjct: 121 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS----PFILTKRPRGIEIAS 176
Query: 185 IEDLG-LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+D+G + + A W PG A K L EF+ HL Y ++R N+TS L
Sbjct: 177 -DDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATSRL 235
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + L + AK E+ SV FL +G RE+S YL ++FP
Sbjct: 236 SPHLHFGEISPWVILRALEL-----AKLEHTCDLASVEHFLSELGWREFSVYLLYHFPKL 290
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW D W++G TGYP++DAGMRELWATG++HNR+R+IV+SF
Sbjct: 291 DCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 350
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 351 KDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDG 410
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA A+ + LG YPKPIID R +
Sbjct: 411 VYIRQWIPELAQLNSQSIHQPWTDA-----DASSIFLGKKYPKPIIDHQEARTK 459
>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|423586430|ref|ZP_17562517.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|401229948|gb|EJR36456.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
Length = 476
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 273/477 (57%), Gaps = 19/477 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY +E F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QEETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA----GT 179
+ +N LL EPW I + + F +++ Q Q+ P P+ VQ+
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK----PFSRVQSIKWGNSL 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
S+ +L L +S+ + W P A K +F L+ Y + R G N
Sbjct: 173 PASLSVSELQLLPTIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNV 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S+L+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL ++
Sbjct: 231 HSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+PFT +PL + ++FPW+ + + W++G+TGYP +DAGMRELW TG++HNR R+ V+
Sbjct: 288 YPFTVYKPLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D GEY+R+W+PEL +P ++I+ PW+AP ++L+ + ++LG YP PI+D RER
Sbjct: 408 DKNGEYIRRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464
>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
Length = 502
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 181/469 (38%), Positives = 259/469 (55%), Gaps = 14/469 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW R+DLR+ DNPAL AAA G V P ++PG + WWL SL L +
Sbjct: 27 VLVWLRQDLRLRDNPALYAAANTGRSVIVVYLLPNRNDDWFPGGAASWWLHHSLDALTTN 86
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L +L+L ++ S + KA V +N Y+P RD +KL + G V
Sbjct: 87 LHKRHHQLIL-RSGSAATEMTRLAEDCKAAAVFWNRCYEPADRERDEKTADKLAQAGYQV 145
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCS 184
+S+ G LL EPW + ++G + F +W K + ++E AS LP P L D
Sbjct: 146 RSFPGSLLIEPWTLSTKQGDPYQVFTPFW-KAARSRVEFASPLPAPESLKTPDQWPDSEE 204
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D L + + W PG A +F++ ++ Y R + TS LS
Sbjct: 205 LADWKLLPTLDWADE--FPERWKPGEDAAHAAWQKFLDDNIAEYGTERDVPSHHGTSRLS 262
Query: 245 PYLHFGELSVRKVF----QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
P+LH+GE+S R+++ + + KQ E+FE ++V +L +G RE+ ++ ++F
Sbjct: 263 PHLHYGEISPRQIYAEAVEKMNRKQT---ATESFE--KNVNVYLSEIGWREFGYHVLYHF 317
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P T E PL F W KAW+QG+TGYP+VDAGMRELW TGW+HNR+R+IV+S
Sbjct: 318 PHTPENPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRTGWMHNRVRMIVAS 377
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K L + W G K+FWDTL+DADL + LGWQ+ SG D R+ +P Q KFD
Sbjct: 378 FLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYFRVFNPTRQSEKFD 437
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P+G Y+R+W PELA +P +++H P DAP +VL AGV LG +YP+PI+D
Sbjct: 438 PKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPIVD 486
>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 476
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L + + T V +N YDP L + +K L + G+
Sbjct: 59 KQLEALGSTLIIRKG-STEEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPVSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF +
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAVKDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP + + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRVQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPIRKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W+P A K +F L+ Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWNPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + + FPW + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL+ +P ++IH PW+AP ++L+ A ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 273/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V P+Y ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPIYI----QDETFSIGSAAKWWLHHAIIDIK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K + +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-NIQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPTSKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A KV +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ W+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP+++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDMPSKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E+
Sbjct: 472 MKEL 475
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 264/474 (55%), Gaps = 22/474 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DNPA + A + V P+Y + ++ G+ WWL SL LG+
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K + +LE ++ V +N Y+P + RD IK L E I
Sbjct: 61 SLNQQGLSLVLRKGDPQ-EIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALGEREIK 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS+NG+LL+EPW I ++ G F F YW +C Q+ P+ P+ L + I+ S
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS----PFMLTKRPRGIEITS 175
Query: 185 IEDLG-LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+DLG + + A W+PG A K L EF+ HL Y + R N+TS L
Sbjct: 176 -DDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNATSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + L + AK E SV FL +G RE+S YL ++FP
Sbjct: 235 SPHLHFGEISPWVILRALEL-----AKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW D W++G TGYP++DAGMRELWATG++HNR+R+IV+SF
Sbjct: 290 DCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 349
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 350 KDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDG 409
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA N + LG YPKPIID R +
Sbjct: 410 IYIRQWIPELAQLNSQSIHQPWTDADAN-----SIFLGKKYPKPIIDHQEARTK 458
>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
Length = 476
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 269/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEATQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K ST +L + + T V +N YDP L + +K L G+
Sbjct: 59 KQLEALGSTLIIRKG-STQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGM 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ I +
Sbjct: 118 ICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPVSL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K EF L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 266/474 (56%), Gaps = 22/474 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++WFR+DLR+ DNPA + A + V P+Y + ++ G+ WWL SL LG+
Sbjct: 4 ALMWFRQDLRLTDNPAFIEACSHHDIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K S ++E ++ V +N Y+P + RD IK L E I
Sbjct: 61 SLNQKGLNLVLRKG-SPQEIIVELVAQHNVESVYWNRSYEPQVIARDKKIKLALGEREIK 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS+NG+LL+EPW I ++ G F F YW +C Q+ P+ P+ L + I+ S
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS----PFMLTKRPRGIEITS 175
Query: 185 IEDLG-LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+DLG + + A W+PG A K L EFV HL Y ++R N+TS L
Sbjct: 176 -DDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRDRDFPAKNATSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + L + AK E SV FL +G RE+S YL ++FP
Sbjct: 235 SPHLHFGEISPWVILRALEL-----AKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW D W++G TGYP++DAGMRELWATG++HNR+R+IV+SF
Sbjct: 290 DCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 349
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 350 KDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDG 409
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA A+ + LG YPKPIID R +
Sbjct: 410 VYIRQWIPELAQLNSQSIHQPWTDA-----DASSIFLGKKYPKPIIDHQEARTK 458
>gi|423641840|ref|ZP_17617458.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
gi|401277790|gb|EJR83729.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
Length = 476
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 272/477 (57%), Gaps = 19/477 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA----GT 179
+ +N LL EPW I + + F +++ Q Q+ P P+ VQ+
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK----PFSRVQSIKWGNSL 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
S+ +L L +S+ + W P A K +F + L+ Y + R G N
Sbjct: 173 PASLSVSELQLLPTIPWTSH--MEVIWDPTEEGAYKTFKKFFSRKLVSYSEGRDFPGQNV 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S+L+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL ++
Sbjct: 231 HSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+PFT +PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+
Sbjct: 288 YPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D GEY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER
Sbjct: 408 DKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464
>gi|421477024|ref|ZP_15924877.1| FAD binding domain of DNA photolyase [Burkholderia multivorans CF2]
gi|400227339|gb|EJO57346.1| FAD binding domain of DNA photolyase [Burkholderia multivorans CF2]
Length = 476
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 177/467 (37%), Positives = 265/467 (56%), Gaps = 17/467 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IV FRRDLR+ D+PAL+AA AR +V PVY P E+ + PG SRWWL SL+ L +
Sbjct: 4 AIVLFRRDLRLSDHPALSAACARHDAVLPVYVHTPDEDAIWSPGAASRWWLHHSLTSLDR 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G L++ +++ T+A + A+ A V + Y+P ++ RD ++K L GI+
Sbjct: 64 ALREQGGRLLVMQSDPTIA-VPALARAVDAQGVYWTRRYEPATIARDAALKSTLRAQGIA 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
SY G L EPW + + G + F +W K L+ ++ LP R + T D +
Sbjct: 123 AHSYPGALWQEPWTLATDAGQPYRVFTPFWRK-LRTRVSDCHPLPAARPRRWMTTDDSTA 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E LGL +A L W PG + A + L +FV++ L Y R TS LS
Sbjct: 182 VEALGLLPRIRW--DAGLADAWRPGEAGAWERLEQFVDEALAEYGDARDAPARLGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
+LH+GE++ ++ + L + + + + FLR +G RE++ +L ++FP T
Sbjct: 240 AHLHYGEITPTQILRTLQER----VARTSGSVRPDLEPFLRELGWREFAHHLLYHFPHTT 295
Query: 305 ERPLLSNLKYFPWHADLG-NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ + F W D G W+QGRTG PLVDAGMR+LW TGW+HNR+R++V+SF
Sbjct: 296 DANFDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFLT 355
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L WR G ++FWDTL+DADL + LGWQ+++G D R+ +P +Q +KFDP+
Sbjct: 356 KNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPDA 415
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
Y+++WLPEL+R+P + +H PW P L A G YP P++DL
Sbjct: 416 AYLKRWLPELSRLPADVLHRPWKH-PAALAACG------YPTPMVDL 455
>gi|423413073|ref|ZP_17390193.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|423431142|ref|ZP_17408146.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
gi|401102633|gb|EJQ10619.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|401118167|gb|EJQ25999.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
Length = 476
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 271/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ LK+LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLKALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L+ Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+ YL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 ATYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
Length = 482
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 175/480 (36%), Positives = 263/480 (54%), Gaps = 15/480 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ I+WFR+DLR+ D PAL AA+RDG V P+Y + G + G SRWWL SLS L
Sbjct: 3 DTVILWFRQDLRLNDLPALQAASRDGRRVLPLYIFDEDSPGDWVMGGASRWWLHHSLSAL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ ++ G +L+ F+ + L + + AT V + Y+P + + + E L
Sbjct: 63 ARDIEDQGGKLI-FRRGKSREVLGDICKSTDATAVYCSRRYEPWASEEEKMLHEDLGNSD 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP--PWRLVQAAGTI 180
I + Y G LL+EP + + G + F +W CL++ +P W + +
Sbjct: 122 IDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLELDRAEPVPVPDVTWSTFTKSDAL 181
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D + + + A W+PG A + L +F+E+ + RY R +
Sbjct: 182 DDWQLR------PTSPNWAASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPAEEVS 235
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LH GELS R+V+ K++ E ++++ F +G RE+S +L F
Sbjct: 236 SRLSPHLHHGELSPRQVWAMCEQKKL-----ETPASEKAIKKFQAEIGWREFSYHLLHFF 290
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P E+ N FPW D + W+QG+TGYP+VDAGMRELWATG +HNRIR++V+S
Sbjct: 291 PEIPEKAFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVAS 350
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL WR G +FWDTL+DAD+ + WQ+++GS D R+ +P QG KFD
Sbjct: 351 FLCKHLLQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKFD 410
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+YVRQW+PE+AR+P +++H PW+A L+ AG++LG +YP+PI+D R+ A
Sbjct: 411 KHGDYVRQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIVDHKEARQAALDA 470
>gi|384084820|ref|ZP_09995995.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 484
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 186/483 (38%), Positives = 272/483 (56%), Gaps = 17/483 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVW RRDLR+ D+PAL A+++G V P+Y E+ G WW SL L +S
Sbjct: 4 TIVWLRRDLRLADHPALWEASQEGVVIPLYILDADEQA----GTAELWWRHHSLQQLQES 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G L+L + L L E I+ A V +N YDP + +D +IK +L GI+V
Sbjct: 60 LARYGLPLIL-RRGKPLQILQEIIAETSARAVFWNRRYDPAGIAQDTAIKAELRSQGIAV 118
Query: 126 QSYNGDLLYEPW-EIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGTIDGC 183
+S+ GD L EPW +DE+ + F +W L + + PA P + + T D
Sbjct: 119 RSFTGDCLVEPWLHHHDEK--PYKVFTPFWKSLLARFSIVPALPEPDFSALPHQLTQDLV 176
Query: 184 SIEDLGLEDESEKSSN--ALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+ E L + N W+PG + A L +F+++ L+ Y + R NS S
Sbjct: 177 T-ETLAEWHLLPQKPNWAKRFSEFWAPGETGAKNRLQQFLDESLVNYSEGRNFPAQNSVS 235
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+L GE+S R+++Q + + ++ E + FLR +G RE+S +L F+FP
Sbjct: 236 RLSPHLSHGEISPRQIWQ-----ETRFHLRQHPELTDEGEHFLRELGWREFSWHLLFHFP 290
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ PL FPW D + W+ G+TGYP+VDAGMRELW +GW+HNR+R+I +SF
Sbjct: 291 QLPDTPLRPEFADFPWQKDTLLLERWQSGQTGYPIVDAGMRELWQSGWMHNRVRMICASF 350
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K LL+ W+ G +FWDTL+DADL + WQ+++GS D R+ +P +QG KFDP
Sbjct: 351 LIKDLLVSWQDGEAWFWDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPVLQGEKFDP 410
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EG+Y+R+W+PEL+ +P +IH PW A ++LK AGV LG NYPK +ID R++
Sbjct: 411 EGKYLRRWIPELSALPDRFIHQPWAADQDLLKKAGVVLGGNYPKRLIDHHEARQQALDIF 470
Query: 482 FKM 484
K+
Sbjct: 471 EKL 473
>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|423379068|ref|ZP_17356352.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|423442112|ref|ZP_17419018.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|423534525|ref|ZP_17510943.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
gi|423540200|ref|ZP_17516591.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|423546432|ref|ZP_17522790.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|423623773|ref|ZP_17599551.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|401173735|gb|EJQ80947.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|401181001|gb|EJQ88155.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|401257696|gb|EJR63893.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|401633514|gb|EJS51291.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|402416068|gb|EJV48387.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|402462942|gb|EJV94645.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
Length = 476
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 178/486 (36%), Positives = 273/486 (56%), Gaps = 15/486 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+ L++LG+ L++ K TE + +L+E ++ T V +N YDP L + +K L
Sbjct: 59 KQLEALGSTLIIRKGRTEEEIRSLIE---QLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GI + +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQIIPKPISKVQSIKWGNSLPA 174
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
S+ +L L +S+ + W P A K +F L+ Y + R N S
Sbjct: 175 SLSVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHS 232
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
+L+PYL FG++SVR ++ L K + + ++ V F+R + RE+S YL +++P
Sbjct: 233 MLAPYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FT +PL + ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+SF
Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469
Query: 482 FKMWEM 487
M E
Sbjct: 470 KSMKEF 475
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 265/474 (55%), Gaps = 22/474 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DNPA + A + V P+Y + ++ G+ WWL SL LG+
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K + +LE ++ V +N Y+P ++ RD IK L E I
Sbjct: 61 SLNQQGLCLVLRKG-APQEIILELVAQYGVESVYWNRCYEPQAIARDKKIKLALGEREIK 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS+NG+LL+EPW I ++ G F F YW +C Q+ P+ P+ L + I S
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS----PFMLTKRPRGIKITS 175
Query: 185 IEDLG-LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+DLG + + A W+PG A K L EF+ HL Y + R N+TS L
Sbjct: 176 -DDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNATSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + L + AK E SV FL +G RE+S YL ++FP
Sbjct: 235 SPHLHFGEISPWVILRALEL-----AKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW D W++G TGYP++DAGMRELWATG++HNR+R+IV+SF
Sbjct: 290 DCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 349
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 350 KDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDG 409
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA A+ + LG YPKPIID R +
Sbjct: 410 VYIRQWIPELAQLNSQSIHQPWTDA-----DASSIFLGKKYPKPIIDHQEARTK 458
>gi|348029287|ref|YP_004871973.1| DNA photolyase [Glaciecola nitratireducens FR1064]
gi|347946630|gb|AEP29980.1| DNA photolyase [Glaciecola nitratireducens FR1064]
Length = 481
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 272/481 (56%), Gaps = 12/481 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+ IVWFR+DLRI DNPAL+ AA +GS+ PV+ + G S+WWL SL
Sbjct: 8 KIIVWFRQDLRITDNPALSLAADNGSIIPVFILDDDAPAEAVLGGASKWWLHHSLL---- 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL + ++ + + L+ L + A VV+N LY+P RD +IK +L + I+
Sbjct: 64 SLSKSLSNKLIIRRGNPLSILSDIAEEFSADTVVWNRLYEPWQRSRDENIKTELKKNNIN 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGC 183
+S NG LL+EP + + + F Y+ K CL Q + P ++ A G ++
Sbjct: 124 AKSLNGSLLWEPMSVLKKDETPYKVFTPYYRKGCLTRQAPRFPLTKPAQMDIAEG-VEFS 182
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ L LE + + W PG A L F+ Y R TSLL
Sbjct: 183 NDALLSLELIPKIEWYKEIEAQWEPGEEGAANRLQRFINDAATSYQDARNLPAVKGTSLL 242
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + I A E F+ K+ + +L +G RE+S YL F++P
Sbjct: 243 SPHLHFGEVSPNQAWYA-----IQGAFENAFDNKD-LDVYLSELGWREFSYYLLFHWPEI 296
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ + +F W + + + KAW+ G TG P++DAGMREL+ TG++HNRIR++V SF V
Sbjct: 297 QHKNFNAKFDHFSWRSSVDDLKAWQFGNTGVPIIDAGMRELYQTGYMHNRIRMVVGSFLV 356
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++FWDTLLDAD+ + GWQ+++GS D R+ +P +QG KFD EG
Sbjct: 357 KNLLIDWREGERWFWDTLLDADMASNSSGWQWVAGSGADAAPYFRVFNPILQGEKFDKEG 416
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EYV+Q+ PEL ++P ++IH PW+AP +LKA G+ELG +YPKPI+DL R+R A +
Sbjct: 417 EYVKQYCPELKKLPKKFIHKPWEAPAEILKACGIELGKDYPKPIVDLKESRKRALDAFAQ 476
Query: 484 M 484
+
Sbjct: 477 L 477
>gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB102]
gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102]
Length = 476
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 179/487 (36%), Positives = 269/487 (55%), Gaps = 17/487 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVIFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVQ 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T +L I + T V +N YDP L + +K L GI
Sbjct: 59 KQLEALGSTLIIRKG-NTQEEILSLIEQLDITAVYWNICYDPDKLQSNQKMKIVLEGKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I R+
Sbjct: 118 VCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISKVQRIKGGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ L W P A K +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIRWTSHIELI--WEPTEEGAYKTCKKFFSSKLAFYCEGRDFPNENAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNF 300
+PYL FG++SV+ WM L K + ++ V F+R RE+S YL +++
Sbjct: 235 APYLSFGQISVK------WMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHY 288
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFT +PL + ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+S
Sbjct: 289 PFTVYKPLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVAS 348
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+PW+ G K+F DTLL AD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 349 FLVKHLLIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+GEY+R+W+PEL MP ++IH PW+AP ++L+ A +++G YP P++D RER A
Sbjct: 409 KDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPVVDHKAARERALCA 468
Query: 481 IFKMWEM 487
M E
Sbjct: 469 YKSMKEF 475
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 194/485 (40%), Positives = 269/485 (55%), Gaps = 17/485 (3%)
Query: 6 TIVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYP-----GRVSRWWLKQSL 59
IVWFR DLR+ D+PAL AAA G + +Y + P G SRWWL QSL
Sbjct: 9 VIVWFRDDLRLSDHPALHQAAASGGPLICIYVFDEDSAQLRSPQARPLGGASRWWLAQSL 68
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHL-YDPVSLVRDHSIKEKL 118
L SL+ GA L+L + + A + E + A+ V +N + P V D + E L
Sbjct: 69 RALAASLEKRGARLILRRGPAA-AIIAELARQVDASAVHWNEIEIAPHRAVAD-DLAEAL 126
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
GI + GDLL P E+ + G F +W + L + +P +LP + + AA
Sbjct: 127 SVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLGLG-DPPKLLPAPKTLSAAQ 185
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
G ++ LE +E L W+PG A LT F++ L Y + R +
Sbjct: 186 GPSGDQLDSWMLE-PTEPDWAGGLRESWTPGEGAAQDNLTAFLDA-LPGYTEGRDRPDCA 243
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS LSP+L FGE+S R+V+ + + A+ G + FL +G RE+ R+L
Sbjct: 244 ATSRLSPHLRFGEISPRQVW---YAARFAAAERPAIAG--DIDKFLSELGWREFCRHLLH 298
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+ P ER L ++ FPW D AW++G TGYP+VDAGMRELW TG +HNR+R++V
Sbjct: 299 DHPDLAERNLQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGVMHNRVRMVV 358
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG K
Sbjct: 359 ASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVFNPILQGEK 418
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP G+YVR+W+PELA +P ++IH PW A P L AAGV LG NYP+PIID +GRER
Sbjct: 419 FDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIIDHRVGRERAL 478
Query: 479 QAIFK 483
A K
Sbjct: 479 AAYAK 483
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 263/499 (52%), Gaps = 30/499 (6%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
N ++ WFR DLR+ D P L AAA+ G+V PV+ W G + G S+WWL SL L
Sbjct: 2 ANASLYWFRHDLRLADLPGLIAAAKAGTVIPVFVWDEALGGDWSLGGASQWWLHHSLQSL 61
Query: 63 GQSLKSLGAELVLFKTEST--LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L LG+ L+L + E++ +A LLE A V + Y P + ++++K
Sbjct: 62 AADLNGLGSRLILRRGETSKVIAKLLE---ETGAQNVFASRQYQPWAADTENAVKAVTES 118
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-----ILPP--WRL 173
G + Y G LL+EP I G F F +W L+ P + P W
Sbjct: 119 AGGDFKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPVPLLTSPDEWPQ 178
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLG--RGWSPGWSNADKVLTEFVEQHLLRYYKN 231
A T C K+ N G WSPG + A L F++ H+ Y
Sbjct: 179 SDALNTWQLCP-----------KTPNWATGWEELWSPGEAGASGALRTFLDSHVDSYGNG 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R +TS LSPYL FGE+S R+++ W Q K+ N + S+ FL +G RE
Sbjct: 228 RDFPAQPNTSRLSPYLKFGEISPRQIW---WTAQN--TKQSNPDEGSSIDKFLSEIGWRE 282
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ +L FP ++ +YFPW + N AW+QG TGYP++DAGMRELW TG++H
Sbjct: 283 FCNHLVAQFPAMPDKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMH 342
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++V+SF K LL+ WR G ++FWD LLDADL + WQ++ GS D R+ +
Sbjct: 343 NRVRMVVASFLTKHLLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFN 402
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P QG KFD G Y R+W+PELA +P ++++ PW+AP LKAAGVELG YP PI+D
Sbjct: 403 PIAQGEKFDKAGMYTRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHR 462
Query: 472 LGRERLTQAIFKMWEMEAA 490
RE +A + ++AA
Sbjct: 463 TARESALEAYATLKNIDAA 481
>gi|423447663|ref|ZP_17424542.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
gi|401130074|gb|EJQ37743.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
Length = 476
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/486 (36%), Positives = 273/486 (56%), Gaps = 15/486 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+ L++LG+ L++ K TE + +L+E ++ T V +N YDP L + +K L
Sbjct: 59 KQLEALGSTLIIRKGRTEEEIRSLIE---QLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GI + +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQIIPKPISKVQSIKWGNSLPA 174
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
S+ +L L +S+ + W P A K +F L+ Y + R N S
Sbjct: 175 SLSVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHS 232
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
+L+PYL FG++SVR ++ L K + + ++ V F+R + RE+S YL +++P
Sbjct: 233 MLAPYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FT +PL + ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+SF
Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+PW+ G K+F DTL+DAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLIDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469
Query: 482 FKMWEM 487
M E
Sbjct: 470 KSMKEF 475
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 264/479 (55%), Gaps = 20/479 (4%)
Query: 4 NRTI-VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
N+TI VW R+D R+ DNPAL AA++G V PVY EE G S+WWL +L+
Sbjct: 2 NKTIIVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDYEESSM--GSASKWWLHHALNDF 59
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
S+K + L++ K L + + A + +N Y+P +L RD ++ E
Sbjct: 60 KTSIKKIEGTLIVQKGNPK-DVLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFFSEQQ 118
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I+++++ G LL+EPW+I E G + F AY+ K Q +++ + ++ ++
Sbjct: 119 INIRTFEGFLLHEPWKITKENGDPYKVFTAYY-KASQKHSVSSAVKKVTSIQASSKPVES 177
Query: 183 CSIEDLGLE-----DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
S+ DL L DE+ KS+ W A V F++ LL Y K R
Sbjct: 178 LSVSDLDLLPSIPWDETIKST-------WEATEKGAIDVFKTFLKNKLLHYEKGRDFPAE 230
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
S LSPYL G+LS R ++ L K K + ++ F+R + R+++ L
Sbjct: 231 ALNSFLSPYLATGQLSARVLYHYLRTKA---EKVGSDAFEQQAEMFIRQLIWRDFAYQLL 287
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++FP T PL K F W +AW+ G+TGYPLVDAGMRELW TG++HNR+R++
Sbjct: 288 YHFPHTTTEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMV 347
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL+ W+ G +F+DTL+DADL + +GWQ+++GS D R+ +P Q
Sbjct: 348 AASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSE 407
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGEY+++WLPEL +P+ +IH PW+AP +VL+ A V L YP PI+D RER
Sbjct: 408 KFDKEGEYIKKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARER 466
>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 476
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V P+Y ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPIYI----QDETFSIGSAAKWWLHHAIIDIK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPTSKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A KV +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++ V+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQIPVKLMYHYLINKS---TERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ W+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E+
Sbjct: 472 MKEL 475
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 264/476 (55%), Gaps = 9/476 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TIVWFR LR+ D+PAL AAA+ G V Y + + G + G +RWWL QSL L
Sbjct: 6 TIVWFRESLRLSDHPALYAAAKSGGPVVCSYIYDQESSGLRHLGAATRWWLAQSLRALQA 65
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK+LGA+L++ + + L+E +A+ V +N + S++ L E+G++
Sbjct: 66 DLKTLGADLIIRRGRAA-QVLVELARETRASAVYWNDVAQAGPRRVASSVEAGLGEIGVA 124
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ + DLL +P + + G F +W + L + P + P RL A + +
Sbjct: 125 SRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPGRLA-AVPNVVSLT 183
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+++L LE + L W G A + L F+E + Y +R + ++TS LS
Sbjct: 184 VDELMLEPTRPDWAGGLRAT-WQAGERAAQQRLGSFLESAVGSYAGDRDRPDIDATSRLS 242
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L FGE+S R+++ +A EE + + FL +G RE+SR+L +N P
Sbjct: 243 PHLRFGEISPRQIWYA-----ARFAAEERPALAKGIDKFLSEIGWREFSRHLLYNNPDLA 297
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
R L + FPW D AW++GRTGYP+VDAGMRELW TG +HNR+R++ +S VK
Sbjct: 298 TRNLQPSFDAFPWTQDDAALAAWQRGRTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVK 357
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LLL WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KFD G
Sbjct: 358 HLLLDWRQGEQWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGS 417
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
YVR+W+PELAR+P IH PW A P L AGV LG +YP PI++ GRER A
Sbjct: 418 YVRRWVPELARLPAGLIHQPWAAKPLELAEAGVTLGRSYPAPIVEHKHGRERALAA 473
>gi|423636149|ref|ZP_17611802.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
gi|401276137|gb|EJR82094.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
Length = 476
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 272/484 (56%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V P+Y ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPIYI----QDETFSIGSAAKWWLHHAIIDIK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKG-NTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P + +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPTSKVQSIKWGSSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A KV +F L Y + R N+ S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++ V+ ++ L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQIPVKLMYHYLINKS---TERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL N ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQRGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ W+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 412 EYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E+
Sbjct: 472 MKEL 475
>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 179/488 (36%), Positives = 274/488 (56%), Gaps = 19/488 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA----GT 179
+ +N LL EPW I + + F +++ Q Q+ P P+ VQ+
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK----PFSRVQSIKWGNSL 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
S+ +L L +S+ + W P A K +F L+ Y + R G N
Sbjct: 173 PASLSVSELQLLPIIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNV 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S+L+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL ++
Sbjct: 231 HSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+PFT +PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+
Sbjct: 288 YPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D GEY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER
Sbjct: 408 DKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALC 467
Query: 480 AIFKMWEM 487
A M E
Sbjct: 468 AYKSMKEF 475
>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 271/477 (56%), Gaps = 19/477 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA----GT 179
+ +N LL EPW I + + F +++ Q Q+ P P+ VQ+
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK----PFSRVQSIKWGNSL 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
S+ +L L +S+ + W P A K +F L+ Y + R G N
Sbjct: 173 PASLSVSELQLLPIIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNV 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S+L+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL ++
Sbjct: 231 HSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+PFT +PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+
Sbjct: 288 YPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D GEY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER
Sbjct: 408 DKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 269/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFPMGSASKWWLHHAIIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K +T + I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLETLGSTLIIRKG-NTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 VCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ +L L +S+ + W P A K +F L+ Y + R N S+L
Sbjct: 177 FVSELHLLPTIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 268/484 (55%), Gaps = 11/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAVKDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASL 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ +L L +S+ + W P A K +F L Y + R N S+L
Sbjct: 177 SVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSML 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 235 APYLSFGQISVKLMFHYLVNKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+PL + + FPW + W++G TGYP +DAGMRELW TG++HNR R+ V+SF V
Sbjct: 292 VSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EY+R+W+PEL+ +P ++IH PW+AP ++L+ A ++LG YP PI+D RER A
Sbjct: 412 EYIRRWVPELSDIPNKYIHKPWEAPVHILQKANIKLGDTYPYPIVDHKAARERALCAYKS 471
Query: 484 MWEM 487
M E
Sbjct: 472 MKEF 475
>gi|423649036|ref|ZP_17624606.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
gi|401284534|gb|EJR90400.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
Length = 476
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 178/488 (36%), Positives = 274/488 (56%), Gaps = 19/488 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ I+ F++D R+ DNPAL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIIMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA----GT 179
+ +N LL EPW I + + F +++ Q Q+ P P+ VQ+
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK----PFSRVQSIKWGNSL 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
S+ +L L +S+ + W P A K +F L+ Y + R G N
Sbjct: 173 PASLSVSELQLLPIIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNV 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S+L+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL ++
Sbjct: 231 HSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+PFT +PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+
Sbjct: 288 YPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D GEY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER
Sbjct: 408 DKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALC 467
Query: 480 AIFKMWEM 487
A M E
Sbjct: 468 AYKSMKEF 475
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 192/494 (38%), Positives = 265/494 (53%), Gaps = 20/494 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M TIV FR DLR+ D+PAL AA+ G V PVY + Y G RWW +SL
Sbjct: 1 MSQPTTIVLFRNDLRLADHPALWYAAQRGPVLPVYL---RHAADSY-GSAWRWWHGESLL 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L G L+L ++ + A L E + A A V +N YD + D +K E
Sbjct: 57 KLQAALAQRGLPLLL-RSGTAKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSLFKE 115
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
LG+ +S+ G+LL EPWE E G + F +W L P + P +A I
Sbjct: 116 LGVEARSFPGNLLVEPWEHLRE-GQPYRVFTPFWKAMLARHRFPQPLAEP-ESYRAPTAI 173
Query: 181 DGCSIEDLGLEDESEKSSNALLG--RGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
EDL + +G R W G A + L +FV++ L Y + R G
Sbjct: 174 PAS--EDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPGKP 231
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
S LSPYL GE+S R+++ W L EE + +V FLR +G RE+S +L +
Sbjct: 232 FVSRLSPYLAHGEISPRQIW---WHLSRL--AEEQGAWRRNVDAFLRELGWREFSWHLLY 286
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP PL + FPW D +AW + RTGYP++DAGMRELW +GW+HNR+R+IV
Sbjct: 287 HFPDLPREPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMHNRVRMIV 346
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK L +PW+ G +FWDTL+DADL + WQ+++G D R+ +P +Q K
Sbjct: 347 ASFLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQAQK 406
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP+G+YVR+WLP+L R+P + IH PW AP VL+ AG+ LG YP+P++D RE
Sbjct: 407 FDPQGDYVRRWLPQLQRLPADHIHAPWQAPAVVLEQAGIALGKEYPRPLVDHHEARE--- 463
Query: 479 QAIFKMWEMEAADN 492
A WE +N
Sbjct: 464 -AALAAWEAIRREN 476
>gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3]
gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3]
Length = 482
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 263/475 (55%), Gaps = 15/475 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ ++WFR+DLRI D PAL AA RDG V P+Y G + PG SRWWL SL+ L
Sbjct: 3 DTVVLWFRQDLRINDLPALQAATRDGQKVLPIYILDEDAPGDWSPGGASRWWLHHSLTAL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
Q + LG L+ F+ TL+ L + A A + + Y+P + + ++ + L
Sbjct: 63 AQDIDHLGGTLI-FRKGKTLSILRDVCEASGARAIYCSRRYEPWAGQEEQTLYKALDSDN 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP--PWRLVQAAGTI 180
IS + + G LL+EP + + G F F +W C + ++ + P W + T+
Sbjct: 122 ISFKRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRNEVPQPAEKPSVAWAEGIQSDTL 181
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D + L + + S N W PG + A L F++ + RY R ++T
Sbjct: 182 DAWKL--LPRDPDWAASWNEF----WQPGENGAQARLHAFLDDTVSRYADERDLPSVDAT 235
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S +S +LH GE+S R+++ K++ E ++ F +G RE+S +L F
Sbjct: 236 SRMSAHLHHGEISPRQIWAMCEQKKL-----EQPHSDTAINKFQAELGWREFSYHLLHFF 290
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P E P N FPW A+ +AW++G+TGYP+VDAGMRELWATG +HNR+R++V+S
Sbjct: 291 PHLPETPFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNRVRMVVAS 350
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL WR G +FWDTL+DADL + WQ+++GS D R+ +P QG KFD
Sbjct: 351 FLCKHLLQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPVTQGEKFD 410
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+G+YVR+W+PE+A + +++H PW+AP VL AGV LG +YP+PI+D R+
Sbjct: 411 KQGDYVRRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREARQ 465
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 262/479 (54%), Gaps = 20/479 (4%)
Query: 4 NRTI-VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
N+TI VW R+D R+ DNPAL AA++G V PVY EE G S+WWL +L+
Sbjct: 2 NKTIIVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDYEESSM--GSASKWWLHHALNDF 59
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
S++ + L++ K L + + A + +N Y+P L RD ++ E
Sbjct: 60 KNSIEKIQGTLIVQKGNPK-DVLQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFFSEQQ 118
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I+++++ G LL+EPW+I E G + F AY+ K Q +++ + ++ ++
Sbjct: 119 INIRTFEGFLLHEPWKITKENGDPYKVFTAYY-KASQKHSVSSAVKKVTSIQASSKPVES 177
Query: 183 CSIEDLGLE-----DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
S+ DL L DE+ KS+ W A V F++ LL Y K R
Sbjct: 178 LSVSDLDLLPSIPWDETIKST-------WEATEKGAIDVFKTFLKNKLLHYEKGRDFPAE 230
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
S LSPY G+LS R ++ L K K + ++ F+R + R+++ L
Sbjct: 231 ALNSFLSPYFATGQLSARVLYHYLRTKA---EKVSSDAFEQQAEMFIRQLIWRDFAYQLL 287
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++FP T PL K F W +AW+ G+TGYPLVDAGMRELW TG++HNR+R+I
Sbjct: 288 YHFPHTTTEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMI 347
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL+ W+ G +F+DTL+DADL + +GWQ+++GS D R+ +P Q
Sbjct: 348 AASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSE 407
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGEY+++WLPEL +P+ +IH PW+AP +VL+ A V L YP PI+D RER
Sbjct: 408 KFDKEGEYIKKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARER 466
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 184/480 (38%), Positives = 260/480 (54%), Gaps = 12/480 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFR DLR+ DN AL AA+ V PVY P + G +WWL SL+ LG+
Sbjct: 12 AIVWFRNDLRVNDNAALLAASSHKQVVPVYILEPAANTRAI-GGARKWWLHHSLAKLGEK 70
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LGA L+L + + L + + A V +N YDP L D S+K+ L I V
Sbjct: 71 LADLGAPLMLMRGDPALL-IAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALRAQDIVV 129
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCS 184
+S+ G LL+EP + + + +W + ++ +E P P RL A +
Sbjct: 130 ESFAGQLLHEPTRVRTGNDTFYKVYSPFW-RAIEGGIEDREPAPAPDRLTALANAPQSET 188
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D GL + L W PG A + L EFV + + Y R G STS LS
Sbjct: 189 LSDWGLLPTKPDWARGLR-ETWKPGEDGAHERLDEFVSERVCGYASLRDVPGVESTSRLS 247
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L GE++ ++ Q L A + + K+ T F + +G RE+S +L N P
Sbjct: 248 PHLANGEITPAQIIQALK------ASDADASPKDR-TVFRKEVGWREFSYHLLVNEPDLP 300
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
++ S FPW D AW++G TGYP+VDAGMRELW TGW+HNR+R++ +SF K
Sbjct: 301 QQNHNSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTASFLTK 360
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L++ WR G ++FWDTL+DAD + WQ+++GS D R+ +P IQG KFDP+G+
Sbjct: 361 HLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPDGD 420
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YVR+++PELA +P+++IH PW AP + L AGV LG YP PI+D R R A K+
Sbjct: 421 YVRRYVPELANLPSKFIHKPWTAPDDALAKAGVHLGETYPMPIVDHQQARNRALAAYEKI 480
>gi|383317844|ref|YP_005378686.1| deoxyribodipyrimidine photolyase [Frateuria aurantia DSM 6220]
gi|379044948|gb|AFC87004.1| deoxyribodipyrimidine photolyase [Frateuria aurantia DSM 6220]
Length = 498
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 184/483 (38%), Positives = 262/483 (54%), Gaps = 12/483 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ D+PAL A R G + VY P +EG G + WWL +L L Q
Sbjct: 17 VVWFRDDLRLADHPALEHARRSGLPLICVYVLQPAQEGMRGLGGAASWWLHGALQALDQD 76
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ G EL+L S L + S + A +V+N Y D IK++ G
Sbjct: 77 LRACGGELLLLAG-SAPDVLGQLASQVDAAGLVWNRRYGQAERAMDAGIKQRFRAEGRLA 135
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTID 181
S+ G +L+EPW + + + F AYW CL+ P + P L +Q
Sbjct: 136 SSHAGSVLHEPWTLRPDGAPPYQVFSAYWRACLRAGEPPLPLPAPADLRFASLQGLSLAS 195
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
S+ +L L + + L W PG + A + L +FVE+ L Y + R G S
Sbjct: 196 RRSLAELDLLPRTPDWAGGLRAH-WVPGEAAAWRQLQQFVEEGLCGYAEGRDFPGQAHCS 254
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSPYL FG LS R++ W A + G++ + FL +G R++ +YL ++
Sbjct: 255 RLSPYLRFGHLSPRQI----WHAMSAAALQHRLPGQD-LDKFLAELGWRDFCQYLHYHHA 309
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
RPL + + PW D KAW++G+TGYPLVDAGMRELW TGW+HNR+R++V+SF
Sbjct: 310 ALESRPLQPSFEAMPWRHDPAALKAWQRGQTGYPLVDAGMRELWTTGWMHNRVRMVVASF 369
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LLL WR G +FWDTL+DAD + WQ+++G D R+ +P +QG KFD
Sbjct: 370 LVKHLLLDWRDGEAWFWDTLVDADPASNPASWQWVAGCGMDAAPYFRIFNPILQGQKFDA 429
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+G YVR WLPELA++P + PW A +AAGV LG++YP+P+++ + RER QA
Sbjct: 430 QGAYVRHWLPELAKLPDRALQQPWTASSAQTRAAGVRLGIDYPEPVVEHAMARERALQAY 489
Query: 482 FKM 484
+M
Sbjct: 490 AQM 492
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 190/492 (38%), Positives = 272/492 (55%), Gaps = 19/492 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP---GRVSRWWLKQSLSYL 62
I+WFR DLR+ DNPAL AA G P+ +E G P G SRWWL +SL+ L
Sbjct: 7 AILWFREDLRLTDNPALNAAVNSGR--PLICVYLRETGAGAPREMGGASRWWLNKSLASL 64
Query: 63 GQSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
G SL+++G +L L E + AL+E A V +N Y D +IK+ L +
Sbjct: 65 GASLEAIGGKLTLRTGPAEKIIPALVE---ETGAAAVFWNRRYGLPERETDAAIKKTLKD 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G+ QS+NG LL EPW++ G + F +W + LQ Q +P + +P + + A +
Sbjct: 122 NGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFW-RALQAQYKPPAFIPSPKKI-AGASA 179
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG-GNS 239
+ +++D GL E S + W PG A K L F++ + Y R G
Sbjct: 180 ETENLKDWGLHPEKPDWSGGIAA-AWEPGEVGAQKRLDAFLDGPVSDYVGTRNLPGVSTG 238
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FGE+ ++++ + + L A++ + ++S FL + RE+S L +
Sbjct: 239 TSRLSPHLRFGEIGPAQIWRAV--RARLEAQQAD---EDSARVFLSEIAWREFSYTLLYY 293
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P SN W D F AW +G+TGYP+VDAGMRELW TGW+HNR+R+IV+
Sbjct: 294 NPALATENYNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIVA 353
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF K LLLPW+ G ++FWDTL+DAD + WQ+ +GS D R+ +P QG KF
Sbjct: 354 SFLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQKF 413
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G YVR W PELA +P +++H P++A LK A V LG +YP+PIID +GR+R
Sbjct: 414 DEDGAYVRHWCPELAGLPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDHPVGRQRALD 473
Query: 480 AIFKMWEMEAAD 491
A M E + A+
Sbjct: 474 AYKAMKEEQTAE 485
>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
Length = 487
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 187/491 (38%), Positives = 265/491 (53%), Gaps = 23/491 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPAL----AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLK 56
M I+WFR DLR+ DNPAL A G+V P++ G S+WWL
Sbjct: 1 MSHPLVIMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLH 60
Query: 57 QSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
QSL+ L S G L LF+ + LA + I+ AT V++N Y+P + RD IK
Sbjct: 61 QSLASLS---ASTGQHLQLFQGDP-LAIIESLINQYDATHVIWNRGYEPWQITRDSHIKA 116
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQME--PASI---LPP 170
L + + V S NG LL+EP ++ + + F Y+ K CL P SI LP
Sbjct: 117 TLKDC-VEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLPW 175
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
+ + + ++++L L + + W PG A L ++E+ RY +
Sbjct: 176 ATRINSTNIFEPLTLDELKLMPSIQWYDT--IAAQWQPGEQGAKDRLATYIEEAAGRYRE 233
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+R TSLLSP+LHFGE+SV V+ + K EN E +L +G R
Sbjct: 234 DRNLPAVKGTSLLSPHLHFGEISVNTVWYAI--KDAFKDDPEN----EHADTYLSELGWR 287
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
E+S YL F+FP S FPW + KAW+ G TG P+VDAGMREL+ TG++
Sbjct: 288 EFSHYLLFHFPHIQTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYM 347
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR+R+IV SF VK LL+ WR G ++FWD LLDAD+ + WQ+++GS D R+
Sbjct: 348 HNRVRMIVGSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIF 407
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
+P +QG KFD +G+YV+ + PEL +P ++IH PW+AP N+L+A + LG NYPKPI+DL
Sbjct: 408 NPILQGEKFDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDL 467
Query: 471 DLGRERLTQAI 481
+ R+R A
Sbjct: 468 KVSRQRALDAF 478
>gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
Length = 476
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 260/467 (55%), Gaps = 17/467 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IV FRRDLR+ D+PAL+AA AR +V PVY P E+ + PG SRWWL SL+ L +
Sbjct: 4 AIVLFRRDLRLSDHPALSAACARHDAVLPVYVHTPDEDAIWSPGAASRWWLHHSLTSLDR 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G L+ +++ T+A + A+ A V + Y+P ++ RD ++K L GI+
Sbjct: 64 ALREQGGRLLAMQSDPTIA-VPALARAVDAQGVYWTRRYEPAAIARDAALKSTLRAQGIA 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
SY G L EPW + + G + F +W K L+ + LP R + T D +
Sbjct: 123 AHSYPGALWQEPWTLATDAGQPYRVFTPFWRK-LRTSLSDCHPLPAARPRRWMTTDDSTA 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E LGL +A L W PG A + L +FV++ L Y R TS LS
Sbjct: 182 VEALGLLPRIRW--DAGLADAWRPGEGGAWERLEQFVDEALAEYGDARDAPARLGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
+LH+GE++ ++ + L + + + + FLR +G RE++ +L ++FP T
Sbjct: 240 AHLHYGEITPTQILRTLQER----VARTSGSVRPDLEPFLRELGWREFAHHLLYHFPHTT 295
Query: 305 ERPLLSNLKYFPWHADLG-NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ + F W D G W+QGRTG PLVDAGMR+LW TGW+HNR+R++V+SF
Sbjct: 296 DANFDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFLT 355
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L WR G ++FWDTL+DADL + LGWQ+++G D R+ +P +Q +KFDP+
Sbjct: 356 KNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPDA 415
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
Y+++WLPEL+R+P + +H PW K + YP P++DL
Sbjct: 416 AYLKRWLPELSRLPADVLHRPW-------KHSAALAACGYPTPMVDL 455
>gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 209
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/209 (71%), Positives = 179/209 (85%)
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHHPW+A
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PPNVLKAAGVELGLNYPKPIIDLDLGRER 476
P +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 263/474 (55%), Gaps = 22/474 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DNPA + A V P+Y + ++ G+ WWL SL LG+
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACFHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K S +LE ++ V +N Y+P + RD IK L E I
Sbjct: 61 SLNQQGLSLVLRKG-SPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALGEREIK 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS+NG+LL+EPW I ++ G F F YW +C Q+ P+ P+ L + I+ S
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPS----PFMLTKRPRGIEITS 175
Query: 185 IEDLG-LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+DLG + + A W+PG A K L EF+ +L Y + R N+TS L
Sbjct: 176 -DDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHNLSGYKRERDFPAKNATSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S + + L + AK E SV FL +G RE+S YL ++FP
Sbjct: 235 SPHLHFGEISPWVILRALEL-----AKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW D W++G TGYP++DAGMRELWATG++HNR+R+IV+SF
Sbjct: 290 DCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 349
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 350 KDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDG 409
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA N + LG YPKPIID R +
Sbjct: 410 IYIRQWIPELAQLNSQSIHQPWTDADAN-----SIFLGKKYPKPIIDHQEARTK 458
>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
Length = 471
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 261/473 (55%), Gaps = 20/473 (4%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DNPA + A + V P+Y + ++ G+ WWL SL LG+
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G LVL K S +LE +S V +N Y+P RD IK L E I
Sbjct: 61 SLNQQGLSLVLRKG-SPQEIILELVSQYGVESVYWNRCYEPPVFARDKKIKLALGEREIK 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS+NG+LL+EPW I ++ G F F YW +C Q+ P+ P L + I+ S
Sbjct: 120 AQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQILNIPS----PLMLTKRPRGIEITS 175
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ + + A W+PG A K L EF+ HL Y ++R N+TS LS
Sbjct: 176 DDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAKNATSRLS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S + + L + ++ E SV FL +G RE+S YL ++FP
Sbjct: 236 PHLHFGEISPWVILRALELTKL-----EQTCDLASVEHFLSELGWREFSVYLLYHFPKLD 290
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ FPW D W++G TGYPL+DAGMRELWATG++HNR+R+IV+SF K
Sbjct: 291 CENFRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNRVRMIVASFLTK 350
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+ WR G ++F DTL+DADL + WQ+++G D R+ +P +Q KFDP+G
Sbjct: 351 DLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDGV 410
Query: 425 YVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+RQW+PELA++ ++ IH PW DA A+ + LG YPKPII+ R +
Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDA-----SASSIFLGNKYPKPIINHQEARTK 458
>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. 'Ames Ancestor']
Length = 469
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 266/478 (55%), Gaps = 11/478 (2%)
Query: 10 FRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSL 69
F++D R+ DNPAL AA+ G V PVY + F G S+WWL ++ + + L++L
Sbjct: 2 FQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQLEAL 57
Query: 70 GAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129
G+ L++ K ST +L + + T V +N YDP L + +K L G+ + +N
Sbjct: 58 GSTLIIRKG-STQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMICKEFN 116
Query: 130 GDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLG 189
LL EPW I + + F +++ Q Q+ I + S+ +L
Sbjct: 117 SHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQVIHKPISKVQSIKGGNSLPVSLSVSELH 175
Query: 190 LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHF 249
L +S+ + W P A K EF L Y + R N+ S+L+PYL F
Sbjct: 176 LLPTIPWTSH--MESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLAPYLSF 233
Query: 250 GELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309
G++SV+ ++ L K + + ++ V F+R + RE+S YL +++PFT +PL
Sbjct: 234 GQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLN 290
Query: 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLP 369
+ ++FPW+ + + W++G TGYP +DAGMRELW TG++HNR R+ V+SF VK LL+P
Sbjct: 291 KSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIP 350
Query: 370 WRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
W+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD GEY+R+W
Sbjct: 351 WQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKW 410
Query: 430 LPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEM 487
+PEL MP ++IH PW+AP ++L+ A ++LG YP P++D RER A M E
Sbjct: 411 VPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKEF 468
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 258/476 (54%), Gaps = 26/476 (5%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DNPA + A + V P+Y + K G WWL SL+ L +
Sbjct: 4 ALVWFRYDLRLNDNPAFIEACSHHQFVIPLYIYDGKNSVS---GEAQDWWLHHSLTSLSE 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL LG L+L K + + + + + + V +N Y+P ++ RD IK L+E GI
Sbjct: 61 SLAQLGLNLILRKGDP-FEIISDLVKKLSVSSVYWNRCYEPAAISRDKKIKAALLERGIE 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTIDGC 183
VQS NG LL+EPW I ++ G F F YW C Q + ++P+ L G
Sbjct: 120 VQSSNGSLLHEPWTIKNKNGDYFKVFTPYWKHCKQHLNIQPSMYL--------ENRPAGI 171
Query: 184 SIEDLGLEDESEKSS---NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
++ L+D + A W+PG + A + L EF+E HL Y KNR N+T
Sbjct: 172 EVQSEVLKDWKLLPAINWAAQFSEYWTPGEAGAQQKLHEFIEHHLNDYKKNRDFPIKNAT 231
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+S + ++ I AK S FL +G RE+S YL ++F
Sbjct: 232 SRLSPHLHFGEISPWTI-----LRAIELAKLNPNCDLSSADHFLSELGWREFSVYLLYHF 286
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P S FPWH D W+ G TGYP++DAGMRELWATG++HNR+R+IV+S
Sbjct: 287 PKLPYENFRSEFDAFPWHNDKELLARWQNGLTGYPIIDAGMRELWATGYMHNRVRMIVAS 346
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR G +F DTL+DADL + WQ+++G D R+ +P +Q KFD
Sbjct: 347 FLTKGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFD 406
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
P+G Y+R W+ EL+ + +++IH PW++ + + L +YPKPII+ R R
Sbjct: 407 PDGHYIRHWVSELSHLQSQYIHAPWESA----DSERIYLTTHYPKPIINHHEARTR 458
>gi|423465178|ref|ZP_17441946.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
gi|402418939|gb|EJV51227.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
Length = 476
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 177/486 (36%), Positives = 272/486 (55%), Gaps = 15/486 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DN AL AA+ G V PVY + F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNLALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+ L++LG+ L++ K TE + +L+E ++ T V +N YDP L + +K L
Sbjct: 59 KQLEALGSTLIIRKGRTEEEIRSLIE---QLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
GI + +N LL EPW I + + F +++ Q Q+ P I +
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQIIPKPISKVQSIKWGNSLPA 174
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
S+ +L L +S+ + W P A K +F L+ Y + R N S
Sbjct: 175 SLSVSELHLLPTIPWTSH--MEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHS 232
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
+L+PYL FG++SVR ++ L K + + ++ V F+R + RE+S YL +++P
Sbjct: 233 MLAPYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP 289
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FT +PL + ++FPW+ + W++G TGYP +DAGMRELW TG++HNR R+ V+SF
Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEY+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP P++D RER A
Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469
Query: 482 FKMWEM 487
M E
Sbjct: 470 KSMKEF 475
>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628269|ref|ZP_17604018.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401270133|gb|EJR76158.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
Length = 476
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 178/488 (36%), Positives = 273/488 (55%), Gaps = 19/488 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
N+ IV F++D R+ DN AL A + G V PVY ++ F G S+WWL ++ +
Sbjct: 3 NKIIVMFQKDFRLYDNLALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVK 58
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L++LG+ L++ K T +L I + T V +N YDP L + +K L + GI
Sbjct: 59 KQLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA----GT 179
+ +N LL EPW I + + F +++ Q Q+ P P+ VQ+
Sbjct: 118 ICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK----PFSRVQSIKWGNSL 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
S+ +L L +S+ + W P A K +F L+ Y + R G N
Sbjct: 173 PASLSVSELQLLPTIPWTSH--MEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNV 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S+L+PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL ++
Sbjct: 231 HSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+PFT +PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+
Sbjct: 288 YPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D GEY+R+W+PEL +P ++IH PW+AP ++L+ + ++LG YP PI+D RER
Sbjct: 408 DKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALC 467
Query: 480 AIFKMWEM 487
A M E
Sbjct: 468 AYKSMKEF 475
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 260/474 (54%), Gaps = 9/474 (1%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFR DLR+ D+PAL AAA+ G+ + + + PG +RWWL QSL LG +
Sbjct: 8 IVWFRDDLRLSDHPALHAAAKTGAPV-ICLYVLDDAAGRAPGGAARWWLAQSLRALGADI 66
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ G L+L K + + E AI AT V +N + + +++ L +LGI
Sbjct: 67 RRRGGSLILRKGPAA-GVIPEVARAIGATAVYWNEVAQAPHQSVEKALEAALAKLGIDSH 125
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
+ GDLL P I ++ G F +W + L + +P LP + ++A I ++E
Sbjct: 126 IFPGDLLVAPSAIRNKEGRGLRVFTPFWRRVLALG-DPPKPLPAPKELRAGPKITSDALE 184
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
LE + L W PG ++A L +F++ Y +R + TS LSP+
Sbjct: 185 SWKLEPSKPDWAGGLR-ESWEPGEASARTRLRDFLKHTAHSYAGDRDRPDRKGTSSLSPH 243
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHER 306
L FGELS R+V+ +A EN V FL +G RE+ R+L + P
Sbjct: 244 LRFGELSPRQVWHA-----ARFAAAENPAIGPGVEKFLSELGWREFCRHLLHDHPDLATV 298
Query: 307 PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVL 366
L +N FPW D AW++GRTGYP+VDAG+RELW TG +HNR+R++V+SF VK L
Sbjct: 299 NLQANFDGFPWKPDKTALAAWQRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHL 358
Query: 367 LLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYV 426
L+ WR G +FWDTL+DAD + WQ+++G D R+ +P++QG KFDP+G YV
Sbjct: 359 LIDWRVGESWFWDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPQLQGEKFDPDGTYV 418
Query: 427 RQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
R+W+PEL MP + IH PW A P L +AGV LG YP+PI+D GRER A
Sbjct: 419 RRWVPELKDMPAKLIHQPWQATPIELASAGVTLGKTYPQPIVDHAKGRERALAA 472
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 183/478 (38%), Positives = 262/478 (54%), Gaps = 9/478 (1%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFR DLR+ D+PAL AAA+ G+ V + + PG +RWWL QSL LG +
Sbjct: 37 IVWFRDDLRLSDHPALHAAAKTGAPV-VCLYVLDDAAGRAPGGAARWWLAQSLRTLGAEI 95
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ G L+L K + + E + A+ V +N + + ++ L +LG+ Q
Sbjct: 96 AARGGSLILRKGPAA-RVVAEVVRESGASAVYWNGIAQAPHQAVERQLEAALAKLGVDSQ 154
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
S+ GDLL P I ++ G F +W + L + +P LP + ++A I ++E
Sbjct: 155 SFLGDLLVPPSAIRNKEGRGLRVFTPFWRRVLALG-DPPKPLPAPKQLRAGPNIASDTLE 213
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
LE + + L W+PG ++A L +F++ Y +R + TS LSP+
Sbjct: 214 SWALEPTTPDWAGGLR-ESWTPGEASARARLRDFLKTIARSYVGDRDRPDREGTSRLSPH 272
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHER 306
L FGELS R+VF +A EN + FL +G RE+ R+L + P
Sbjct: 273 LRFGELSPRQVFHA-----ARFAAAENPALGPGIEKFLSELGWREFCRHLLHDHPGLATE 327
Query: 307 PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVL 366
L +N FPW D AW++G TGYP+VDAG+RELW TG +HNR+R++V+SF VK L
Sbjct: 328 NLQANFDGFPWKGDTKALTAWQRGATGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHL 387
Query: 367 LLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYV 426
L+ WR G +FWDTL+DAD + WQ+++G D R+ +P +QG KFDP+G YV
Sbjct: 388 LIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPILQGEKFDPDGTYV 447
Query: 427 RQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
R+W+PEL +P + IH PW A P L +AGV LG YP+PIID GRER A K+
Sbjct: 448 RRWVPELKDLPAKLIHQPWQATPIELASAGVTLGKTYPQPIIDHAKGRERALAAYAKI 505
>gi|374261679|ref|ZP_09620257.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
gi|363537773|gb|EHL31189.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
Length = 477
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/483 (37%), Positives = 262/483 (54%), Gaps = 34/483 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR DN ALA A + P+Y + Q G WWL SL L +
Sbjct: 4 AIVWFRQDLRCNDNQALAEACNHHQYIIPLYIY-----SQESLGAAQHWWLHHSLLALQK 58
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L K L+ + E I K V +N Y+P S+ RD IK++L G+
Sbjct: 59 ELKKQGLDLCL-KQGQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDELRLKGLQ 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL----QMQMEPASILPPWRLVQAAGTI 180
V S+NG LL EPW + ++ G F F YW +C+ Q ++ + PP T
Sbjct: 118 VYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSSINQRPP------PLTS 171
Query: 181 DGCSIEDLGLEDESEKSSNAL-LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ D L +K + A+ W PG A L F+E HL Y + R +
Sbjct: 172 TSEQLSDWRLL--PQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHPSKTA 229
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK---ESVTFFLRAMGLREYSRYL 296
TS L+P+LHFGE+S +V+ + +E + K S FL +G RE+S YL
Sbjct: 230 TSRLAPHLHFGEISPWQVWNAI--------EEAKLQPKCDLRSADHFLAELGWREFSYYL 281
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++FP + FPW D + K W+ G TG+P+VDAGMRELW TG++HNR+R+
Sbjct: 282 LYHFPELPNKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVRM 341
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L++ WR G +F++TLLDADL + WQ+++G+ D R+ +P +Q
Sbjct: 342 IVASFLIKDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQS 401
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDP+GEY++ W+PEL+++P +WIH PW+APP L + LG +YP P++D L R+
Sbjct: 402 EKFDPQGEYIKMWIPELSQVPRQWIHKPWEAPPQTL---AITLGKDYPYPLVDHALVRKI 458
Query: 477 LTQ 479
Q
Sbjct: 459 ALQ 461
>gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 209
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/209 (71%), Positives = 178/209 (85%)
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPD E +R+D+P +G KFDP GEYVR+WLPEL+R+PT+WIHHPW+A
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PPNVLKAAGVELGLNYPKPIIDLDLGRER 476
P +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209
>gi|398830139|ref|ZP_10588333.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
gi|398215848|gb|EJN02409.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
Length = 489
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 271/484 (55%), Gaps = 13/484 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSY 61
N IV FR DLR+ DN AL AAA+ G V V+ + P G +WWL SL
Sbjct: 14 NPVIVLFRHDLRLADNRALYAAAQTGKPVITVFIRDEETSKSVRPLGGARQWWLHHSLVS 73
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L +SL L +L+L K +T A + + KA V++N YDP + D ++K +L+E
Sbjct: 74 LTRSLAKLDQKLILRKG-ATQAIVRNLLDDTKADMVLWNRRYDPAGIEVDTALKAELLER 132
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTI 180
I+ +S++G LL+EP+++ G + F +W CL EP + +P P +L + I
Sbjct: 133 KITAESFDGHLLHEPYKLKTGAGGYYRVFTPFWRACLNGP-EPRNPVPEPKKLRNWSSDI 191
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
++D L + W+PG A + L++F++ + Y R G +T
Sbjct: 192 TSDELDDWALLPTKPDWAKGF-DENWTPGEEGAREKLSDFLDDRVPSYKNGRDIPGTEAT 250
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L GE++ +++ I K++N + FL+ +G RE+S +L FN
Sbjct: 251 SRLSPHLAHGEITPFQIWHASKSPAI---KDQN----GGLDTFLKEVGWREFSYHLLFNN 303
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P H + F W + +F AW+QG TGYP+VDAGMR+LW TGW+HNR+R+I +S
Sbjct: 304 PKLHTENFNKSFDGFEWSRKVSHFDAWKQGNTGYPIVDAGMRQLWQTGWMHNRVRMIAAS 363
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P IQG KFD
Sbjct: 364 FLIKHLLIDWRKGEEWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFD 423
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G YVRQ++P L +P +++H PW AP LKAA ++LG +YP+PI++ R R +A
Sbjct: 424 PNGRYVRQFIPILKDLPDKYLHKPWTAPAATLKAANIDLGKDYPEPIVEHGTARNRALEA 483
Query: 481 IFKM 484
+M
Sbjct: 484 YSRM 487
>gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 206
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/204 (72%), Positives = 177/204 (86%)
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHHPW+A
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PPNVLKAAGVELGLNYPKPIIDLD 471
P +VL+AAG+ELG NYP+PI+ LD
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLD 204
>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
Length = 475
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 260/481 (54%), Gaps = 15/481 (3%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + I+WFRRDLR++ NPALAAA G V P++ P + PG SRWWL SL
Sbjct: 1 MSASPAILWFRRDLRLDANPALAAAMARGPVIPLFILDPADR----PGAASRWWLHGSLE 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVF-NHLYDPVSLVRDHSIKEKLV 119
LG+SL LGA L+L + + +L ++A + +F N LY+P + RD ++K L
Sbjct: 57 ALGESLARLGAPLILRRGSPS--EILPALTAETDARAIFWNRLYEPHLIGRDKALKSALT 114
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
GI V+S+NG LL EPW++ + G + F +W QM P +
Sbjct: 115 AQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQMPFPAPHPAP--KKCAGLSP 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ + L + L W PG A L F++ ++ Y + R
Sbjct: 173 LPSDDLASWSLRPSKPDWAGGLRAT-WQPGERAAQSRLAAFIDDAMVGYREARDIPAAEG 231
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+LH+GE+S +++ + A + G E+ FLR + R+++ +L F+
Sbjct: 232 TSRLSPHLHWGEVSPHRIWSA-----VEAATAAHPSGAEAGRAFLRELAWRDFAHHLLFH 286
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+P S FPW D F AW +G TGYP+VDAGMR+LW TGW+HNR+R+I +
Sbjct: 287 WPDIARENWKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRVRMIAA 346
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK L++ WR G ++F +TL+DADL + WQ+++GS D R+ +P +QG KF
Sbjct: 347 SFLVKHLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVLQGEKF 406
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G YVR ++PELA++ +IH PW AP L AG+ LG YPKP++D R R
Sbjct: 407 DGDGAYVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHARARALA 466
Query: 480 A 480
A
Sbjct: 467 A 467
>gi|423398956|ref|ZP_17376156.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|423410080|ref|ZP_17387228.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
gi|401645588|gb|EJS63241.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|401650994|gb|EJS68562.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
Length = 476
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 268/483 (55%), Gaps = 11/483 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ + +
Sbjct: 4 KIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDATFSIGSAAKWWLHHAVIDVKK 59
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++LG+ L++ K T +L I + T V +N YDP L + +K L GI+
Sbjct: 60 QLEALGSTLIIRKGR-TEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEGKGIT 118
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ +N LL EPW I + + F +++ Q Q+ P I + S
Sbjct: 119 CKEFNSHLLLEPWIIKKKNNTEYKVFTPFYN-AFQKQVIPKPISRVQSIKWGNSLPASLS 177
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ +L L +S+ + W A K +F L+ Y + R N S+L+
Sbjct: 178 VSELHLLPTIPWTSH--MEAIWDSTEEGAYKAFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYL FG++SV+ +F L K + + ++ V F+R + RE+S YL +++PFT
Sbjct: 236 PYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF VK
Sbjct: 293 YKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD GE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y+R+W+PEL +P ++IH PW+AP ++L+ A ++LG YP PI+D RER A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPKHILQKANIKLGDTYPFPIVDHKAARERALCAYKSM 472
Query: 485 WEM 487
E
Sbjct: 473 KEF 475
>gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2M]
gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2]
gi|421468296|ref|ZP_15916848.1| FAD binding domain of DNA photolyase [Burkholderia multivorans ATCC
BAA-247]
gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2]
gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2M]
gi|400232151|gb|EJO61787.1| FAD binding domain of DNA photolyase [Burkholderia multivorans ATCC
BAA-247]
Length = 476
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 261/467 (55%), Gaps = 17/467 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IV FRRDLR+ D+PAL+AA AR +V PVY P E+ + PG SRWWL SL+ L +
Sbjct: 4 AIVLFRRDLRLSDHPALSAACARHDAVLPVYVHTPDEDAIWSPGAASRWWLHHSLTSLDR 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G L++ + + T+A + A+ A V + Y+P ++ D ++K L G++
Sbjct: 64 ALRQQGGRLLVMQNDPTIA-VPALARAVGAQCVYWTRRYEPAAIACDAALKSALRAQGVA 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QSY G L EPW++ + G + F +W K L+ + LP R + T D +
Sbjct: 123 AQSYPGTLWQEPWKVATDSGQPYRVFTPFWRK-LRTSLSDCHPLPAARPRRWMTTDDSTA 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E +GL +A L W PG + A + L EFV++ L Y R TS LS
Sbjct: 182 VEAIGLLPRVRW--DAGLAEAWRPGEAGAWERLAEFVDEALAEYGDARDAPARMGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
+LH+GE++ ++ + L + A + + FLR +G RE++ +L ++FP T
Sbjct: 240 AHLHYGEITPTQILRTLQER----ASRTTDRDRPDLEPFLRELGWREFAHHLLYHFPHTT 295
Query: 305 ERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ + F W D + W+QGRTG PLVDAGMR+LW TGW+HNR+R++V+SF
Sbjct: 296 DANFDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFLT 355
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L WR G ++FWDTL+DADL + LGWQ+++G D R+ +P +Q +KFDP+
Sbjct: 356 KNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPDA 415
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
Y+++WLPEL+ +P +H PW P L A G YP ++DL
Sbjct: 416 AYLKRWLPELSALPANVLHQPWKH-PAALSACG------YPASMVDL 455
>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
Length = 472
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 180/476 (37%), Positives = 274/476 (57%), Gaps = 15/476 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TI WFR+DLR+ DNPAL AA+ + P+Y ++ RWWL SLS L
Sbjct: 3 TIFWFRQDLRLSDNPALVEAAKSADHLIPLYI---LDDQLKMLVDAQRWWLYHSLSSLQT 59
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L K T LLE I K K+ +N Y+P D ++ +L L S
Sbjct: 60 ALSKKGTSLIL-KKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPPL--S 116
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+ Y+ LL EP +I ++ G + F +W K + ++P L + I +
Sbjct: 117 VEIYHSTLLTEPQKIKNKSGGYYKIFTPFW-KHINASLQPRKTLAAPKKFSQHRAIKSDN 175
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E L + S W PG NA VL +F++++L Y +R + +STS LS
Sbjct: 176 LETWNLLPKHPDWSQGF--DQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHLS 233
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYLHFGE+S+R+V+ + I +++N + V FLR + RE++ YL ++FP
Sbjct: 234 PYLHFGEISIRQVWTAITQATI---QDKNLQKAADV--FLRQLIWREFAYYLLWHFPQMG 288
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ + F W + +AW++ TGYP+VDAGMRELW TG++HNR+R+IV+SF VK
Sbjct: 289 KSNFRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L++ WR G K+FW+TLLDADL + LGWQ+I+G PD R+ +P +Q KFDP+G
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+++W+PELA++P+++IH+P D P N+ +++ V LG++YP PI++ +E +A
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKA 464
>gi|414167272|ref|ZP_11423501.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
gi|410891089|gb|EKS38887.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
Length = 488
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 178/470 (37%), Positives = 259/470 (55%), Gaps = 14/470 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP------GRVSRWWLKQSL 59
IVWFR DLR+ D+PAL AAA + + +E P G SRWWL QSL
Sbjct: 9 VIVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEESTSLRPPRGRAIGSASRWWLAQSL 68
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L SL + G LVL ++ + + + I+A V + P + + L
Sbjct: 69 RSLQASLAARGQTLVL-RSGAAARVISDLAQDIEAASVHWIESDVPSQSAVERDVTAALK 127
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
E+G+ + + GDLL +P + ++ G F +W + L + +P LP + ++
Sbjct: 128 EIGVQARGFPGDLLVKPASLRNKEGRGLRVFTPFWKRVLSLG-DPPQPLPVPKKLKPGPA 186
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ + LE + + L W+PG S A L +F+E + Y R + +
Sbjct: 187 VASDDLASWNLEPKHPDWAGGLRDT-WTPGESAAQTRLHDFLETGIKGYATLRDRPDRDG 245
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FGE+S R+V+ +A + + V FL +G RE+SR+L F+
Sbjct: 246 TSRLSPHLRFGEISPRQVWHA-----ANFAAAQKPDIASDVGKFLSELGWREFSRHLLFD 300
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P E+ L S+ FPW D +AW++GRTGYP+VDAGMRELW TG +HNR+R++V+
Sbjct: 301 LPDLAEKNLQSSFDAFPWRRDAKALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMVVA 360
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G K+FWDTL+DAD + WQ+++GS D R+ +P +QG KF
Sbjct: 361 SFLVKHLLIDWRHGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKF 420
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
DP+G YV +W+PELAR+ + IH PW+A P L AAGV LG NYP+P++D
Sbjct: 421 DPDGAYVSRWVPELARLSAKLIHQPWEATPMELAAAGVTLGENYPEPMVD 470
>gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
Length = 477
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 183/458 (39%), Positives = 259/458 (56%), Gaps = 10/458 (2%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M +VWFRRDLR+ DNPALAAA G V PVY P+EEG + PG SRWW SL
Sbjct: 1 MAQPTALVWFRRDLRLGDNPALAAACALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ L LK + L++ + S AL + AT + +N Y+P + RD +IK++L
Sbjct: 61 AALDSGLKKRNSRLIVRQGPSH-KALGQLAEETSATHIFWNRRYEPAVIKRDQAIKQQLR 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G++V+S N LL+EPWEI G + F +W CL+ + + PP L
Sbjct: 120 AAGLTVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHLPPVNRQ 179
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ + LGL + W+PG + A + F+E+ L +Y++ R +
Sbjct: 180 LQSEPLSTLGLLPKIPWDQE--FYTHWTPGEAGAWRQWECFLEEALGKYHQERDRPDLPG 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+LHFGE+S R++ QI + E +LR +G RE++ +L ++
Sbjct: 238 TSRLSPHLHFGEISPRQI-----AFQIQIQMDRRAELTAGGQAYLRQLGWREFAYHLLYH 292
Query: 300 FPFTHERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
FP T E+PL +FPW D G AW+QGRTG PLVDAGMRELW TGW+HNR+R+I
Sbjct: 293 FPETPEKPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRTGWMHNRVRMIA 352
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+S K L +PW+ G ++FW+TL+DADL + LGWQ+++G D R+ +P +QG K
Sbjct: 353 ASLLTKNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYFRVFNPVLQGKK 412
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456
FDPEG+YV+QW+PEL ++ + IH PW L G
Sbjct: 413 FDPEGKYVQQWIPELRKISKQHIHEPWKEARQPLSTPG 450
>gi|294055436|ref|YP_003549094.1| deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
Length = 476
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 270/481 (56%), Gaps = 12/481 (2%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M IVWFR DLR DN ALAAA +G ++ PV+ EG++ G S+WWL +SL
Sbjct: 1 MSAPLAIVWFRNDLRFSDNAALAAAIAEGNAILPVFIRDQVSEGRWPMGAASKWWLHESL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
QS S G +L+ F+ +LA L + AT + +N Y+ +D IK +L
Sbjct: 61 KRFAQSWNSCGGDLI-FRNGDSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKRELF 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
E G+ V+SYN LL EP I ++ G + + Y+ K ++ + ++P +
Sbjct: 120 EDGLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPYF-KAVKDRPVARPVVPDLTAMAFPDE 178
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ D S + + W P A + + EF+ + RY +R + +
Sbjct: 179 LPQSLALDALDLLPSNQWYRKFESK-WEPSEEGAKQQVDEFLSLRVERYDTDRDRPDLDG 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSPYLHFG++ R++ L ++ L ++ FL+ + RE++ + ++
Sbjct: 238 TSALSPYLHFGQIGPRQLVHELELRADL--------EEQGPFIFLKEIYWREFAYNVLYH 289
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP T E PL + FPW + W++G+TGYP+VDAGMR+LW TGW+HNR+R+IVS
Sbjct: 290 FPRTAESPLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVRMIVS 349
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
S VK LL W+ G ++FWDTL+DADL + LGWQ+ G D R+ +P IQG KF
Sbjct: 350 SLLVKHLLQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQGKKF 409
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DPE YVR+++PEL+R+P ++IH PW+AP VL AG+ELG++YP P+++ +GR+R
Sbjct: 410 DPEALYVRRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQRALS 469
Query: 480 A 480
A
Sbjct: 470 A 470
>gi|387906116|ref|YP_006336453.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
gi|387581008|gb|AFJ89722.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
Length = 505
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 183/489 (37%), Positives = 252/489 (51%), Gaps = 12/489 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR D R+ DNPAL A G V VY + G RWWL +SLS L
Sbjct: 13 VVVWFRDDQRLADNPALTHALDTGHPVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKLDD 72
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L + G L+L + A+ SAI A VV+N Y D SIK L++ GI+
Sbjct: 73 ALAAHGGSLILLRGNEH-EAITGFASAIGAAMVVWNRRYAKAQTGTDASIKRDLIDRGIA 131
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRL----VQAAGT 179
V ++NG LL EPW + G F F AYW + P LP P + V A T
Sbjct: 132 VSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPAHAT 191
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
C++ +L L+ + + L W G A L F+E L Y R +
Sbjct: 192 PHVCTLRELELQPSAPDWAGGLR-ETWQCGEQAASDQLEAFLENSLSDYPTLRDFPAARA 250
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES----VTFFLRAMGLREYSRY 295
TS LSPYL FG +SVR+V+ G +S + FL +G RE+S +
Sbjct: 251 TSRLSPYLRFGNISVRQVWYATLSAADAMRSAHTVRGIDSKDGPLNKFLSEIGWREFSYH 310
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L ++F H+ PW D + + W+ GRTGYPLVDAGMRELW TGW+HNR+R
Sbjct: 311 LLYHFAPLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGWMHNRVR 370
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ +SF K LL+ WR G +FWDTL+DAD + WQ++SGS D R+ +P +Q
Sbjct: 371 MVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVLQ 430
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP G+Y R+W+PELA++ + +H PW A L+ A V LG +YP PI+D R
Sbjct: 431 AQKFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQCARA 490
Query: 476 RLTQAIFKM 484
R +++ ++
Sbjct: 491 RALESVKRL 499
>gi|402771126|ref|YP_006590663.1| DNA photolyase [Methylocystis sp. SC2]
gi|401773146|emb|CCJ06012.1| DNA photolyase, FAD-binding [Methylocystis sp. SC2]
Length = 480
Score = 311 bits (796), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 177/465 (38%), Positives = 260/465 (55%), Gaps = 14/465 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLRI DNPAL AAAR G+ + +Y + G++ G +RWWL SL L Q
Sbjct: 5 AIVWFRNDLRISDNPALLAAARTGAPLVALYILDDESPGEWRTGAAARWWLHHSLRALSQ 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL + G L+L + + + I+ A V +N LY+P ++ RD ++ +L + +
Sbjct: 65 SLAARGVSLILRRGRAPYV-FEQIIAETGAGAVFWNKLYEPWAIRRDAELEAQLRDDAVE 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
++ +L+EP ++ ++G F F +W CL P L A D
Sbjct: 124 THCFHESVLFEPEKLRTKQGENFRIFTPFWRACLAAPPPERPHPAPEFLHAAPLPPDSDD 183
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L ++ + + + W G + A L +F H+ Y R +G S LS
Sbjct: 184 LDAWRLLPQNPDWAIGM-RKVWLVGETAARAELADFARHHVGDYKVERDFMGRVGVSRLS 242
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGELS R+V+ + E G E+ +LR +G RE+ +L +
Sbjct: 243 PHLHFGELSPREVWHAI--------SEPQSIGGEA---YLRELGWREFCHHLLISNWDLP 291
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
ERPL + FP+ D + AWR G+TGYPLVDA MRELW TGW+HNR R++ +SF +K
Sbjct: 292 ERPLDRTFERFPYRDDETSLDAWRNGQTGYPLVDAAMRELWITGWMHNRARLVSASFLIK 351
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+ WR G ++FWDTL+DADL + WQ+++G D R+ +P +QG KFDP+G
Sbjct: 352 HLLIDWRKGERWFWDTLVDADLANNSANWQWVAGCGADAAPYFRIFNPALQGEKFDPDGA 411
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
YVR+++PELA + +IH PW AP +VL+AAGV+LG+ YP PI+D
Sbjct: 412 YVRRYVPELASLDVRYIHRPWAAPEDVLRAAGVKLGVTYPHPIVD 456
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 183/483 (37%), Positives = 262/483 (54%), Gaps = 25/483 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TI WFR+DLR+ D P L AAA G+V PV+ P ++ G S+WWL SL L S
Sbjct: 5 TIFWFRQDLRLTDLPGLCAAAERGAVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSLQAS 64
Query: 66 LKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+++ G EL+L + E L AL+E A+ V + Y P + + ++ E L + GI
Sbjct: 65 IEARGGELILRRGAPEDVLTALIE---ESGASAVYSSRQYQPWATSLETTLHETLTDEGI 121
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM--EPASILPPWRLVQAAGTID 181
+ Y G LL+EP + G + F +W CLQ + EP SI V+ +
Sbjct: 122 DYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPD----VEWHVGVR 177
Query: 182 GCSIEDLGLEDESEKSSNALLGRGW----SPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
S+ED L + SN GW SPG A + L +F+ + Y R
Sbjct: 178 SESVEDWNL-----RPSNPNWADGWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAE 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP+L FGE+S R+++ +AK+ E ES+ FL +G RE+ L
Sbjct: 233 AYTSRLSPHLKFGEISPRQIWHA-----AQYAKQRLPEAAESIDKFLSEIGWREFCYTLL 287
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FP +P + +FPW KAW++G TGYP+VDAGMRELW TG++HNR+R+I
Sbjct: 288 DQFPEMPNKPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMI 347
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
SF K LL WR G +FWD L+DAD+ + WQ+++GS D R+ +P QG
Sbjct: 348 TGSFLTKHLLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGE 407
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFD GEYVR+++PE+A +P ++IH PW+AP ++L+ +G+ LG YP+PI+D R+
Sbjct: 408 KFDKAGEYVRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSA 467
Query: 478 TQA 480
A
Sbjct: 468 LAA 470
>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
Length = 505
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 186/489 (38%), Positives = 259/489 (52%), Gaps = 12/489 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR D R+ DNPAL A G V VY P + G RWWL +SL L
Sbjct: 13 VVVWFRDDQRLGDNPALCHAVASGHPVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKLDD 72
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L++ + + A+ + I A KVV+N Y D SIK+ LV GI+
Sbjct: 73 ALSALGGSLIVLRGDEH-EAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQDLVGRGIA 131
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRL----VQAAGT 179
V ++NG LL+EPW + G + F AYW C P + P R+ V T
Sbjct: 132 VSTFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAFFPVPHNVT 191
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
C++ LGL+ + ++ L W G A + L F+E L Y R ++
Sbjct: 192 PHVCTLRALGLQPTAPDWASGLR-LTWRCGEEAARQRLDAFLEHSLRDYADMRDLPAAHA 250
Query: 240 TSLLSPYLHFGELSVRKVF--QCLWMKQILWAKEENFEGKES--VTFFLRAMGLREYSRY 295
TS LSPYL FG +SVR+V+ + ++ + +S + FL +G RE+S +
Sbjct: 251 TSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEIGWREFSYH 310
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L ++FP H+ PW D + W+ G TGYPLVDAGMRELW TGW+HNR+R
Sbjct: 311 LLYHFPPLHQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAGMRELWHTGWMHNRVR 370
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V+SF K LL+ WR G +FWDTL+DAD + WQ++SGS D R+ +P +Q
Sbjct: 371 MVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVLQ 430
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G KFDP+GEY R W+PEL++M E IH PW A L A V LG YP PI+D R
Sbjct: 431 GQKFDPQGEYTRHWVPELSKMSAEKIHAPWTASAEQLHDACVSLGRTYPFPIVDHQAART 490
Query: 476 RLTQAIFKM 484
R +++ ++
Sbjct: 491 RALESVKRV 499
>gi|407771650|ref|ZP_11119003.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285351|gb|EKF10854.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 494
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 182/498 (36%), Positives = 272/498 (54%), Gaps = 37/498 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
I+WFR DLR+ DNPAL A+ + +G V PV+ + Q G +RWWL+++L+
Sbjct: 10 AIMWFRNDLRLADNPALNASVKWAQQNNGIVLPVFILDRVIDAQL--GGATRWWLEKTLT 67
Query: 61 YLGQSLKSLGAE----LVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
L +SL ++ + L +F++++ + + K + +N LYD S+ RD IK
Sbjct: 68 RLDESLATVAGKKAPCLRVFRSDAR-DVFNQLQTDHKIGALFWNRLYDKASIARDADIKS 126
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
L + I +S+NG LLYEPWE+ G F F +W CL++ +
Sbjct: 127 SLRDQNIECESFNGQLLYEPWEVKTGAGSDFKVFSPFWRACLKLPPP----------AEP 176
Query: 177 AGTIDGCSIEDLGLEDESEKSSNAL----------LGRGWSPGWSNADKVLTEFVEQHLL 226
+ + DL L DE++ + L ++PG A L +F++ L
Sbjct: 177 KKAPESIPLGDLQLSDEADIAGLDLSPKPFDWATGFADRFTPGEQGAMDQLHDFIDGRLS 236
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
Y R + TS LSP+L FGE+S R+V W +A +GK + + F+
Sbjct: 237 DYADLRDRPDHRVTSELSPHLRFGEISPRQV----WHAANHYADAHPGQGK-TASKFMAE 291
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+G RE++ ++ F+ PL FPW D + W++G+TG+P+VDAGMRELW
Sbjct: 292 LGWREFAHHILFHARDLKSVPLQGQFTDFPWDDDPKALERWQRGQTGFPIVDAGMRELWH 351
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TG++HNR+R+IV S VK LL+ WR G+ +F DTL+DA + WQ+I G D
Sbjct: 352 TGYMHNRVRMIVGSVLVKHLLIHWREGLAWFDDTLVDACPANNPFSWQWIGGCGADAAPY 411
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
R+ +P +QG KFDP+G YVRQW+PEL+ MP ++IH PW+A P +LKAAGV+LG +YP+P
Sbjct: 412 FRIFNPVLQGEKFDPDGRYVRQWVPELSDMPAQYIHKPWEASPLILKAAGVDLGQSYPEP 471
Query: 467 IIDLDLGRERLTQAIFKM 484
+I + GRER A M
Sbjct: 472 LIGIKEGRERALAAYQDM 489
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 185/475 (38%), Positives = 268/475 (56%), Gaps = 21/475 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEE-GQFYP-GRVSRWWLKQSLSYLG 63
T+VWFR+DLRI+DNPAL AA+ G V PV+ P ++ G+ +P G SRWWL SL L
Sbjct: 3 TLVWFRQDLRIKDNPALFEAAKSGRVLPVFILEPADKTGETHPLGGASRWWLHHSLKALQ 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVF-NHLYDPVSLVRDHSIKEKLVELG 122
Q L L VL K ++ L+ ++ + VF N Y+P ++ RD +K L + G
Sbjct: 63 QDLPGL----VLLKGDAR--HLIPEVAKRAGVEAVFWNRCYEPYAIERDTDLKSSLKDDG 116
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
V+S+ LLYEPWEI + G + + +W Q++++ A LP + A G
Sbjct: 117 YEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQIEIDDA--LPAPEKLDIADYDGG 174
Query: 183 CSIEDLGLEDESEKSSNALLG--RGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+E L K N G W+PG + A + L F+E+ L Y K R + +
Sbjct: 175 EELESFDL---LPKKPNWAKGWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPDLPNV 231
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+LHFGE+S R+++ Q + + + G + + F L + RE+S L ++F
Sbjct: 232 SRLSPHLHFGEISPRQIWHA---TQDVMDRRSSL-GDDGMKF-LSEIAWREFSHNLLYHF 286
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P S +PW G + W++G+TGYP+VDAGMRELW TG++HNR+R+I +S
Sbjct: 287 PKLPSENWRSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAAS 346
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L L WR G +F DTL+DADL + GWQ+++GS D R+ +P QG KFD
Sbjct: 347 FLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKFD 406
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
P+G Y+RQW+PEL + T ++ P+DAP LK A + LG YPKP++D RE
Sbjct: 407 PDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASARE 461
>gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
Length = 513
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 257/476 (53%), Gaps = 10/476 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+VW RRDLR+ DNPAL AA+ G + VY + G+ G+ WWL SL L
Sbjct: 9 TLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACLWWLYHSLKSLRNQ 68
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L L++ + L + + A + +N Y+P RD+SI+++ V I V
Sbjct: 69 LSQWNIPLIVKSGKDAFTILKKLLDRYNADAIYWNRCYEPFEYNRDYSIEKRFVARKIKV 128
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
++Y +LYEPW++ + +G F F YW++CL + P V G ++
Sbjct: 129 ETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCLSLPQPRKPYDKPKFTVHNQGCVEY-KY 187
Query: 186 EDLG----LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+D G L ++ ++ L W PG A + L F++ L Y + R + ++TS
Sbjct: 188 DDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFMKNSLKVYSEKRDCIWLDATS 247
Query: 242 LLSPYLHFGELSVRKVFQ--CLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
LSPYLHFGE+S ++ C + + +L +G RE++ +L F+
Sbjct: 248 NLSPYLHFGEISPFTIWHTACFMRHSTTRSISVPLHCTKR---YLTELGWREFTCHLLFH 304
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+P E+ SN D AW+ G TGYP+VDAGMR+L G++ NR+R+IV+
Sbjct: 305 YPDLPEKSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGMRQLSQAGFMPNRVRMIVA 364
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF + LL+PW+ G ++FW+ L+DADL + WQ+I+G PD R+ +P IQG KF
Sbjct: 365 SFLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGPDVAPYFRMFNPVIQGEKF 424
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
D EG YVR+W+PE+A++P ++ PW+APP +LK A + LG YP+PI++ + RE
Sbjct: 425 DAEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGKTYPRPIVEHKVARE 480
>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
Length = 505
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 182/489 (37%), Positives = 253/489 (51%), Gaps = 12/489 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR D R+ DNPAL A G V VY + G RWWL +SLS L
Sbjct: 13 VVVWFRDDQRLADNPALTHALDTGHPVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKLDD 72
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L + G L+L + A+ +AI A VV+N Y D SIK L++ GI+
Sbjct: 73 ALAAHGGSLILLRGNEH-EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLIDRGIA 131
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRL----VQAAGT 179
V ++NG LL EPW + G F F AYW + P LP P + V A T
Sbjct: 132 VSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPAHAT 191
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
C++ +L L+ + + L W G A L F+E L Y R +
Sbjct: 192 PHVCTLRELELQPSAPDWAGGLR-ETWQCGEQAASDQLEAFLENSLSDYPTLRDFPAARA 250
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES----VTFFLRAMGLREYSRY 295
TS LSPYL FG +SVR+V+ G +S ++ FL +G RE+S +
Sbjct: 251 TSRLSPYLRFGNISVRQVWYATLSAADAMRSARIVRGVDSKDGPLSKFLSEIGWREFSYH 310
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L ++F H+ PW D + + W+ GRTGYPLVDAGMRELW TGW+HNR+R
Sbjct: 311 LLYHFAPLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGWMHNRVR 370
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ +SF K LL+ WR G +FWDTL+DAD + WQ++SGS D R+ +P +Q
Sbjct: 371 MVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVLQ 430
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP G+Y R+W+PELA++ + +H PW A L+ A V LG +YP PI+D R
Sbjct: 431 AQKFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQCARA 490
Query: 476 RLTQAIFKM 484
R +++ ++
Sbjct: 491 RALESVKRL 499
>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
Length = 499
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 266/480 (55%), Gaps = 12/480 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFRRDLR+ DNPAL AA R G + + P Q PGR SRWWL SL+ L +S
Sbjct: 11 LVWFRRDLRLHDNPALWAAVRSGRPLVCAFIDDPDAVAQLAPGRASRWWLHHSLAALSRS 70
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
++ G +LVL + ++T + L+ +++V +N +P D ++ +L + G+
Sbjct: 71 IRQRGGQLVLRRGDTT-SELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLADRGVKA 129
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCS 184
+ + L+ P + G + F +W CL+ EP++ LP P RL AA T +
Sbjct: 130 RGFASGTLFNPATHLNGSGKPYRVFTPFWKACLRAP-EPSAALPAPDRLPGAAVTASD-N 187
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ED L ++ ++ + W PG A L F+ L Y ++R + + TS LS
Sbjct: 188 LEDWSLRPQAPDWASGF-SQDWEPGEDGALNRLEAFLANELADYPQSRDRPDEDGTSRLS 246
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L +GE+S R ++ + + + +F+G E FL +G R+++ YL +F
Sbjct: 247 PHLAWGEISPRTIWHTV---RDHAERGGSFQGGEK---FLSELGWRDFAIYLAHHFGSLR 300
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ +FPW ++ AW++G+TG P+VDAGMR+LW TGW+HNR+R+I +SF +K
Sbjct: 301 DENFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRVRMITASFLIK 360
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L + WR GM +F DTL+DADL + WQ+++GS D R+ +P QG +FDP+G
Sbjct: 361 HLGVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVTQGERFDPQGL 420
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
YV +W+PEL + + +H PW P N L AAG+ LG YP P+ DL GRE+ A M
Sbjct: 421 YVHRWVPELTGLSGKAVHAPWTRPANELIAAGISLGQTYPAPVTDLKTGREQALDAYQTM 480
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 178/468 (38%), Positives = 259/468 (55%), Gaps = 18/468 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+ D PAL AA G PVY P++EG + G SR WL++SL+ L
Sbjct: 4 AIVWFRRDLRLHDQPALQAALDAGHTPVPVYLHSPEDEGAWAAGAASRSWLQRSLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ L+L + + AAL + I+ A V +N Y+P + RD +K +L E G+
Sbjct: 64 QLRARGSRLILRQGPAE-AALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELREQGLE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+N LL+EPW++ ++G + F +W L PA P L T+D
Sbjct: 123 VHSHNSALLFEPWQLATQQGGPYKVFTPFWRSALSHWQVPALQAAPKTLPPPPATLDSLP 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E LGL E W PG + A + L FV+ L Y R + TS LS
Sbjct: 183 LERLGLAPTLEWDRG--FWEVWQPGEAGAHEALDVFVDGALRDYLDGRDRPDQVGTSRLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++ ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRIVATL-------ERHRRAATAAAIDGYIRQLGWRDFAHHLLHHFPDTP 293
Query: 305 ERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
ER L + F W D AW++GRTG P+VDAG+RELW TGW+HNR+R+IV+S+
Sbjct: 294 ERNLNPRFERFRWATPDPAQLHAWQRGRTGVPIVDAGLRELWHTGWMHNRVRMIVASYLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+G
Sbjct: 354 KHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQKFDPKG 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDL 470
EY+ +W+PELA +P PW AP + +AA YP+ PI+DL
Sbjct: 414 EYIARWVPELAALPLADRFAPWQAPQRLAQAAP-----QYPRQPIVDL 456
>gi|434375590|ref|YP_006610234.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874147|gb|AFQ26314.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 265/486 (54%), Gaps = 17/486 (3%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+ IV F++D R+ DNPAL A + G V PVY ++ F G ++WWL ++ + +
Sbjct: 4 KIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAIIDVQK 59
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK+LG+ ++ + T +L I + T V +N YDP L + +K L + GI
Sbjct: 60 QLKALGSTFII-RNGKTQEEILSLIEQLDITAVYWNICYDPDRLKSNQKMKMMLEDKGII 118
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ +N LL EP I + + F +++ Q Q+ P I + S
Sbjct: 119 CKEFNSHLLLEPGIIKKKDNTEYKVFTPFYN-AFQKQVIPKPIRKVQSIKWGNSLPASLS 177
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ +L L +S+ + W P A K +F L Y + R N+ S+L+
Sbjct: 178 VSELHLLPTIPWTSH--MEAIWDPTEEGAYKAFKKFFSSKLASYSEGRDFPNQNTHSMLA 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNFP 301
PYL FG++SV WM L K + +E V F+R + RE+S YL +++P
Sbjct: 236 PYLSFGQISVS------WMYHYLINKSTERQCSLFEEQVNSFIRQLIWREFSYYLLYHYP 289
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FT +PL + + FPW + + W++G+TGYP +DAGMRELW TG++HNR R+ V+SF
Sbjct: 290 FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+PW+ G K+F DTLLDAD+ + +GWQ+++GS D R+ +P QG KFD
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
GEY+R+W+PEL +P ++IH PW+AP ++L+ ++LG YP P++D RER A
Sbjct: 410 NGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKVNIKLGNAYPLPVVDHKAARERALCAY 469
Query: 482 FKMWEM 487
M E+
Sbjct: 470 KSMKEL 475
>gi|338974956|ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231555|gb|EGP06690.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 488
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 177/470 (37%), Positives = 256/470 (54%), Gaps = 14/470 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP------GRVSRWWLKQSL 59
IVWFR DLR+ D+PAL AAA + + ++ P G SRWWL QSL
Sbjct: 9 VIVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEQSTSLRPPRGRPLGGASRWWLAQSL 68
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L SL + G LVL K + + + I+A V + P + + L
Sbjct: 69 RSLQASLAARGQTLVLRKGAAA-RVISDLAQDIEAASVHWIESDVPSQSAMERDVTVALK 127
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
E+G+ + + GDLL +P + ++ G F +W + L + +P LP + ++
Sbjct: 128 EIGVQARGFRGDLLVKPASLRNKEGRGLRVFTPFWKRILSLG-DPPQPLPAPKKLKPGPA 186
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ + LE + + L W+PG S A L +F+E + Y R + +
Sbjct: 187 VASDDLASWNLEPKHPDWAGGLRDT-WTPGESAAQTRLHDFLETGIKGYATLRDRPDRDG 245
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FGE+S R+V+ +A + V FL +G RE+SR+L F+
Sbjct: 246 TSRLSPHLRFGEISPRQVWHA-----ANFAAAQKPAIASDVGKFLSELGWREFSRHLLFD 300
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P E+ L S+ FPW D +AW++GRTGYP+VDAGMRELW TG +HNR+R++V+
Sbjct: 301 LPDLAEKNLQSSFDAFPWRRDAKALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMVVA 360
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G K+FWDTL+DAD + WQ+++GS D R+ +P +QG KF
Sbjct: 361 SFLVKHLLIDWRHGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKF 420
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
DP+G YV +W+PELAR+ + IH PW+A P L AAGV LG YP+P++D
Sbjct: 421 DPDGAYVSRWVPELARLSAKLIHQPWEATPMELAAAGVTLGKTYPEPMVD 470
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 185/483 (38%), Positives = 246/483 (50%), Gaps = 12/483 (2%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M + TIVWFR DLR+ D+PAL AA R G V ++ G + G SRWWL +SL
Sbjct: 4 MTESATIVWFRNDLRLCDHPALTAAVKRGGPVIALFVLDDAAAGCWKLGGASRWWLAKSL 63
Query: 60 SYLGQSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEK 117
L + GA L+L + TES L L + AT V Y+P + + + +
Sbjct: 64 EALSHDIAQRGARLILRRGDTESILKRL---VDESGATAVYVTRGYEPWAKGLEEKLHKS 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
G+ + + G LL EP ++ G A+ F +W + P ++ P L
Sbjct: 121 FGGSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPFWRVFRKEFSAPKALAAPRHLGPVP 180
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
I I D L S L W PG A L FV + L Y R +L
Sbjct: 181 DAIASDDISDWKLAPTKPDWSGGL-AEAWRPGERGAQLRLKNFVSEGLSNYDDGRDRLNA 239
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP+L FGE+S + A + +V FL+ + RE+S L
Sbjct: 240 EGTSRLSPHLAFGEISPAAC-----WRAAAEASHQTHSSDGAVETFLKELAWREFSYALL 294
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
F FP + PL FPW N KAW++G TGYP+VDAGMRELWATG++HNR R+I
Sbjct: 295 FQFPQMPDEPLRDEFAAFPWAKSSANLKAWQRGLTGYPVVDAGMRELWATGYMHNRARMI 354
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF K LLLPW G +FWDTL+DADL + WQ+++G D R+ +P +QG
Sbjct: 355 AASFLTKHLLLPWTSGEAWFWDTLVDADLANNAANWQWVAGCGADAAPYFRIFNPVLQGE 414
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFDP+G+YVR+W+PEL R+P+ IH PW A LK AGV +G NYP PI+D R R
Sbjct: 415 KFDPDGDYVRRWVPELQRLPSADIHKPWAADATTLKRAGVAIGKNYPFPIVDHKEARARA 474
Query: 478 TQA 480
A
Sbjct: 475 LTA 477
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 186/483 (38%), Positives = 257/483 (53%), Gaps = 13/483 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS----VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
IVWFR +LR+ D+PAL AA G+ ++ + + G G ++WWL SL
Sbjct: 8 VIVWFRDNLRLSDHPALVAAREAGAALVCLYILDDTHTGKGGNRSLGAATQWWLASSLRA 67
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L LK G LVL K ++ A L A V + P R E L E+
Sbjct: 68 LDTDLKKRGQHLVLRKGDAR-AILPRLAKDTGALAVFWIDSEIPAEAARAQDTAEALHEI 126
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR-LVQAAGTI 180
G+ DLL P I ++ G+ F +W K ++ Q +P LP R L ++
Sbjct: 127 GVETHISPSDLLASPPSIRNKEGNGLRVFTPFW-KRVRSQGDPPRPLPAVRKLPPPVASV 185
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++D LE + L W+PG S A + L +F+++ + Y R G +
Sbjct: 186 KSENLKDWKLEPTHPDWAGGLR-ETWTPGESGAHRRLNDFLDEAIKGYAIGRDFPGRDHA 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FGE+S R+VF +A E++ V FL +G RE+ R+L F+
Sbjct: 245 SHLSPHLRFGEISPRQVFHA-----ARFAAEQHPALSRDVEKFLSELGWREFCRHLLFDH 299
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P H R L S+ FPW D +AW+QGRTGYP+VDAGMRELW TG + NR+R++ +S
Sbjct: 300 PDLHRRNLQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGTMQNRVRMVTAS 359
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LLL WR G +FWDTL+DAD + WQ+++G D R+ +P +QG KFD
Sbjct: 360 FLVKHLLLDWREGEAWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPILQGEKFD 419
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YV +W+PELA++P IH PWDA P L AAGV LG YP+PI+D RER A
Sbjct: 420 PDGAYVAKWVPELAKLPPALIHKPWDATPLELAAAGVTLGKTYPEPIVDHKAARERALAA 479
Query: 481 IFK 483
K
Sbjct: 480 YRK 482
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 188/484 (38%), Positives = 262/484 (54%), Gaps = 20/484 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + I WFR+DLR+ DNPAL+AA G V P+Y KE G G ++ WL SL
Sbjct: 1 MSASIVIHWFRQDLRLSDNPALSAACEAGEVIPLYILNDKEYGAREFGGATKNWLYYSLK 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +SLK +L + + I A V +N Y+P + D +K L E
Sbjct: 61 ALNESLKGQ----LLIRRGDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKTDLEE 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILP-PWRL-VQAA 177
GI+ +S+NG LL+EPW++ G + F ++ K CLQ + EP LP P +L +
Sbjct: 117 NGITAKSFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQAE-EPRKPLPVPDQLRIHPL 175
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
T SI++L L ++ + +A + W G A L F E L Y R
Sbjct: 176 NTEGALSIDELNLLED--RPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNFPAL 233
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP+LHFGE+S +++ L + E + F +G RE+S L
Sbjct: 234 THTSRLSPHLHFGEISPNQIWWVL----------GSHEETRDIDHFRSELGWREFSYSLL 283
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FN P + L FPW +D AW++G+TG P+VDAGMRELW TG++HNR+R+I
Sbjct: 284 FNNPSLPKSNLNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMI 343
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V SF VK LLL WR G ++FWD L+DADL + WQ+I+G D R+ +P +QG
Sbjct: 344 VGSFLVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGE 403
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFD G+Y R++LPEL +P +++ PW+AP +VLK AGV LG NYP PI+DL R+
Sbjct: 404 KFDAHGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKKSRDEA 463
Query: 478 TQAI 481
+A
Sbjct: 464 LRAF 467
>gi|374329028|ref|YP_005079212.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
gi|359341816|gb|AEV35190.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
Length = 471
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 188/484 (38%), Positives = 269/484 (55%), Gaps = 20/484 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + I WFR+DLR+ DNPAL+AA G V P+Y KE G G ++ WL SL
Sbjct: 1 MSASIVIHWFRQDLRLSDNPALSAACDVGEVIPLYILNDKEYGARKLGGATKNWLHYSLK 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +SLK +L++ + + + + I A V +N Y+P + D +K L E
Sbjct: 61 ALNESLK---GQLLIMRGDPAVI-INSLIQETGAAGVFWNRCYEPWRVEHDAQLKTDLEE 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILP-PWRLVQAAG 178
GI+ +S+NG LL+EPW++ G + F ++ K CLQ Q EP LP P +L +
Sbjct: 117 NGIAAKSFNGSLLWEPWQVGKRDGSPYKVFTPFYRKGCLQAQ-EPRKPLPVPDQLRIHSF 175
Query: 179 TIDGC-SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ +G +I++L L ++ + +A + W G A F E L Y R
Sbjct: 176 SAEGALAIDELNLLED--RPWSAQVSSHWEHGEKAAQNRFYAFFEDGLSDYKDGRNFPAL 233
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP+LHFGE+S QI WA + E ++ + F +G RE+S L
Sbjct: 234 THTSRLSPHLHFGEISP---------NQIWWALGSHEETRD-IDHFRSELGWREFSYSLL 283
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FN P + L FPW +D AW++G+TG P+VDAGMRELW TG++HNR+R+I
Sbjct: 284 FNNPSLPKSNLNEKFDNFPWLSDDQRLSAWQKGQTGIPIVDAGMRELWQTGYMHNRLRMI 343
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V SF VK LLL WR G ++FWD L+DADL + WQ+I+G D R+ +P +QG
Sbjct: 344 VGSFLVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGE 403
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFD GEY R++LPEL +P +++ PW+AP ++L+ AGV LG NYP PI++L R+
Sbjct: 404 KFDAHGEYTRRFLPELKDLPDKYLFRPWEAPKDILQGAGVTLGENYPLPIVNLKKSRDEA 463
Query: 478 TQAI 481
+A
Sbjct: 464 LRAF 467
>gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24]
Length = 478
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 179/477 (37%), Positives = 266/477 (55%), Gaps = 13/477 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++IVWFR+DLR++DNPAL AA G V P+Y K + GR S+WWL +SL L +
Sbjct: 6 KSIVWFRQDLRLQDNPALEFAASVGEVLPIYIVDEKNAADWRLGRASQWWLNESLRSLNE 65
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
S+ L L++ + L + + I+ + + +N Y+P ++RD +IK ++ + G
Sbjct: 66 SM---NGALCLYRGDP-LGIIEKLITEHSISNIFWNRCYEPWQVLRDKTIKSEVRKFGAK 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC-LQMQMEPASILPPWRLVQAAGTIDGC 183
+S+NG LL EPWEI G + F ++ + L+ ASI ++ + +
Sbjct: 122 ARSFNGFLLNEPWEIAKSDGTPYKVFTPFYKQSRLKGTPREASIDYVSKIRFVSNSKKNR 181
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
I+ L L +E++ S+ + W+PG ++VL F+E+ L Y R + S L
Sbjct: 182 EIDSLNLLNENDWSTE--MASRWTPGERGGEQVLKLFLERGLCNYKIGRDFPDKEAVSRL 239
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYLHFGELS V W K +A EN E + F R + RE+S L FP
Sbjct: 240 SPYLHFGELSPNYV----WHKVNNFAVLENIETQ--AEHFHRELVWREFSYSLIHYFPDL 293
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R L FPW + K WR G TGYPL+DAGMREL +TG++HNR+R+I +SF V
Sbjct: 294 TYRNLNRRFDDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRVRMITASFLV 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++FWD+L+DADL + WQ+++GS D R+ +P Q KFDP+
Sbjct: 354 KNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVTQSKKFDPDA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+Y+R+W+ EL + P ++IH P AP + L+ G++L YP I+DL RE +A
Sbjct: 414 KYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSREAALRA 470
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 172/471 (36%), Positives = 253/471 (53%), Gaps = 8/471 (1%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR DLR+ D+ AL AA G+ + P+Y Q+ G S WWL +SL+ L
Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTGAPILPLYILDDASPKQWKMGGASHWWLDKSLAALAGD 66
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L S G LVL + +S LL I A V F Y+P ++ + +K KL + ++
Sbjct: 67 LASRGGPLVLRRGDSE-TELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKLDDANVAC 125
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ + G LL EP ++ G + + + ++ + S+ P R+ +
Sbjct: 126 RRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPERIATLEKQPKSERL 185
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D L + S W PG + A K L++FV L Y ++R TS LSP
Sbjct: 186 RDWALHPQKPDWSKGFAA-AWQPGEAGARKRLSDFVRTALKSYARDRNCPATPGTSRLSP 244
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L FGE+S + +N + FL+ + RE+S L F+FP E
Sbjct: 245 HLAFGEISPAACWHAAAHAGGKTNGSDN-----AAETFLKELLWREFSAGLLFHFPELPE 299
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
P FPWH + + KAW+ G+TGYP+VDAGMRELWATG++HNR+R+I +SF +K
Sbjct: 300 EPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITASFLIKH 359
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+PW+ G +FWDTL+DADL + WQ+++GS D R+ +P +QG KFDP+G+Y
Sbjct: 360 LLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKFDPDGDY 419
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
VR+W+PELA++P + IH PW A L AGV+LG +YP PI++ R R
Sbjct: 420 VRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLGKSYPNPIVEHGEARAR 470
>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
Length = 488
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 180/477 (37%), Positives = 253/477 (53%), Gaps = 13/477 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++WFRRDLR+ DNPAL A G + PV+ + G S WWL +SL L
Sbjct: 11 VVLWFRRDLRLNDNPALYHAVATGRPILPVF--ILDRDPDRPAGAASLWWLDKSLRALDD 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ G+ L+L + +S L L I A + N L++P + RD I +L G+
Sbjct: 69 SLRERGSRLILRRGDS-LTQLQSLIEDTGADALFMNRLFEPAAFARDAEIAHELKSAGVD 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ +NG LL P + + + F + K L EP R + + S
Sbjct: 128 CRGFNGSLLARPGAVLNGSDAPYKVFTPFM-KALLATAEPPPPTTAPRRIATPDAVQTES 186
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
I+D L S G W+PG + AD L++F+ + L Y K R +TS LS
Sbjct: 187 IDDWRLHPTRSDWSK---GFDWTPGEAGADAALSDFLARGLKTYAKGRDHPALPTTSRLS 243
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LH+GE+S + Q A K F+ +G R++S +L +FP
Sbjct: 244 PHLHWGEISPWRAAQRARGAADAGAVPAGEADK-----FVAELGWRDFSAHLLHHFPTIT 298
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+R + PW D +AW++GRTGYPLVDAGMR+LW TGW+HNR+R++V+SF VK
Sbjct: 299 DRAFRPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMHNRVRMVVASFLVK 358
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+ WR G +FWDTL+DADL ++ WQ+++GS D R+ +P QG KFD G
Sbjct: 359 HLLIDWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFNPITQGEKFDATGG 418
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR+W+PEL R+P W+ PW APP VL+ AGV LG +YP PI+D R R A+
Sbjct: 419 YVRRWVPELRRLPDRWLPSPWTAPPEVLRDAGVRLGKDYPHPILDHAQARARALDAL 475
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 259/475 (54%), Gaps = 19/475 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVW R+D R+ DNPAL AA++G V PVY EE G S+WWL +L+ S+
Sbjct: 6 IVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDDEESSM--GSASKWWLHHALNDFKTSI 63
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ + L++ K + L + I A + +N Y+P +L RD ++ E I+++
Sbjct: 64 EKIEGTLII-KKGNPKDVLQKLIHETNAQDIYWNRRYEPHALKRDKELQAFFSEQQINIR 122
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
++ G LL+EPW+I E G + F AY+ K Q +++ + + +I+ S+
Sbjct: 123 TFEGFLLHEPWKITKENGDPYKVFTAYY-KASQKHAVSSTVKKVTSIHAFSSSIESLSVS 181
Query: 187 DLGLE-----DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
DL L DE+ KS+ W A F++ LL Y K R S
Sbjct: 182 DLDLLPSIPWDETIKST-------WDATEQGAINSFKTFLKNKLLHYEKGRDFPAEAFNS 234
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSPY G+LS R ++ L K K + + F+R + R+++ L ++FP
Sbjct: 235 FLSPYFASGQLSARVLYHYLRNKA---EKVSSNAFEHQTEMFIRQLVWRDFAYQLLYHFP 291
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
T PL K F W +AW+ G+TGYPLVDAGMRELW TG++HNR+R++ +SF
Sbjct: 292 HTTSEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASF 351
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+ W+ G +F+DTL+DADL + +GWQ+I+GS D R+ +P Q KFD
Sbjct: 352 LVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWIAGSGADAAPYFRIFNPTAQSEKFDK 411
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
EGEY+++WLPEL +P+ +IH PW+AP +VL+ A V L YP PI+D RER
Sbjct: 412 EGEYIKKWLPELRDLPSSYIHKPWEAPADVLEKANVTLDKTYPTPIVDHKAARER 466
>gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
Length = 490
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/483 (36%), Positives = 264/483 (54%), Gaps = 22/483 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAA----ARDGSVFPVYT---WCPKEEGQ-----FYPGRVSRW 53
TIVWFR+DLR+ D+PAL AA A G + PVY + P ++ Y G +RW
Sbjct: 3 TIVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAAARW 62
Query: 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHS 113
W SL L + L S G+ L++ + E LA L I KA +VV+N +P + D
Sbjct: 63 WRHHSLRSLAERLASCGSRLIIRQGEP-LAELQRLIHETKANRVVWNRRMEPAARAEDTR 121
Query: 114 IKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL 173
IK L GI+V S+NG+ L+EPW I +++G F F YW + ++ + P L
Sbjct: 122 IKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVAAGLDLPTYPEPDNL 181
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ +I++L L + W PG A +F+ + Y + R
Sbjct: 182 PTVPRALNSLAIDELELLPAIAWDKD--FYNHWQPGEPGAWSRFEDFLPL-IDEYAEARN 238
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
L G S LS +LHFGE+S R++ ++ +L + E + + F+R +G RE+
Sbjct: 239 HLIGTGVSKLSAHLHFGEISPRQI-----VRYLLDTRGSVLEPR-GIEHFVRELGWREFG 292
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
YL +++P T + PL + F W + +AW++G+TG P+VDA MR LW TGW+HNR
Sbjct: 293 AYLAYHYPQTVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMHNR 352
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K LL+ WR G +F DTL+DAD + GWQ+ +G+ D R+ +P
Sbjct: 353 ARMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFNPV 412
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
+Q KFDP+G ++R+W+PELAR+ +++ PW A L AG+ LG YP+PI DL +
Sbjct: 413 LQAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLKVS 472
Query: 474 RER 476
R+R
Sbjct: 473 RQR 475
>gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
Length = 472
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 265/481 (55%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR++DNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHDPIPLYIDAPHEEGEWAPGAASRSWRHRSLAALDD 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ +S L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 64 TLRALGSGLVIRAGDSA-QVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRNLRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA++ P L T++ +
Sbjct: 123 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLPATLETVA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 183 LESLALLPRLDWDHG--FWEHWQPGEAGAHEMLEIFIDGALDGYRENRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + N + ++R +G R++S +L +FP T
Sbjct: 241 PHLHFGEIAPWRIASTL-------EAQRNARNAAEIDGYIRQLGWRDFSYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L + F W AD +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+S
Sbjct: 294 NQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASLLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 354 KHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + L YP+ PII L GR+ A
Sbjct: 414 TYITRWVPELGKLAVKERFAPWLHPLSLAR-----LAPEYPRSPIIGLAEGRDAALAAYA 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 183/482 (37%), Positives = 255/482 (52%), Gaps = 38/482 (7%)
Query: 6 TIVWFRRDLRIEDNPA-LAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DNPA + A + V P+Y + +E G WWL SL+ L
Sbjct: 4 ALVWFRFDLRLNDNPAFIEACSHHQFVIPLYIY---DEKNSVLGGAQAWWLYHSLTSLSN 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G L+L K + L +L+ + + V +N Y+PV++ RD IK L+E GI
Sbjct: 61 SLAQRGLNLILRKGDP-LEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKATLLERGID 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S NG LL+EPW I ++ G F F YW C Q+ +I P L
Sbjct: 120 VHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQL----INIQRPMNLEH--------- 166
Query: 185 IEDLGLEDESEKSSN----------ALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+G+E +SE ++ A W PG A + L EF+E HL Y NR
Sbjct: 167 -RPVGVEVQSELLNDWKLLPTINWAARFSEYWIPGEGGAQQKLKEFIEHHLNGYKNNRDF 225
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
N+TS LSP+LHFGE+S + ++ I AK S FL +G RE+S
Sbjct: 226 PIKNATSRLSPHLHFGEISPWTI-----LRAIELAKLNPNCDLASAEHFLSELGWREFSV 280
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
YL ++FP + FPWH D WR+G TGYP++DAGMRELWATG++HNR+
Sbjct: 281 YLLYHFPKLPSENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRV 340
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+I +SF K LL+ WR G +F DTL+DADL + WQ+++G D R+ +P +
Sbjct: 341 RMIAASFLTKGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVL 400
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q KFD +G Y+R W+PEL+++ ++ IH PW++ + + L YPKPIID R
Sbjct: 401 QSQKFDADGSYIRHWVPELSQLDSQSIHAPWES----VGSERFYLNTKYPKPIIDHHEAR 456
Query: 475 ER 476
R
Sbjct: 457 TR 458
>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
Length = 485
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 186/483 (38%), Positives = 262/483 (54%), Gaps = 19/483 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYP---GRVSRWWLKQSLSY 61
IVWFR DLR+ D+ AL AA G ++ +Y E G+ P G ++WWL SL
Sbjct: 8 AIVWFRDDLRLSDHAALIAARDAGATLICLYVLDDTETGKHGPRSLGAAAQWWLANSLRA 67
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVF---NHLYDPVSLVRDHSIKEKL 118
L LK LG LVL + ++ +L ++ K VF + + + RD + E L
Sbjct: 68 LDTDLKKLGQHLVLRRGDAH--EVLPKLAREANAKAVFWIDSEVSAEAARARD--VAEAL 123
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR-LVQAA 177
E+G+ V DLL P I ++ GH F +W K ++ Q EP L R L
Sbjct: 124 KEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFW-KRVRAQGEPPRPLAAVRKLPPPV 182
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
++ ++ED LE + W+PG + A + L +F++ + Y + R G
Sbjct: 183 VSLKSENLEDWQLEPTRPDWAGGFR-ETWTPGEAGAHRRLHDFLDGAIKGYAEGRDFPGK 241
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
+ S LSP+L FGE+S R+VF +A E + + FL +G RE+ R+L
Sbjct: 242 DHASHLSPHLRFGEISPRQVFHA-----ARFAAERHPALSRDIEKFLSELGWREFCRHLL 296
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
F+ P H L S+ FPW D +AW+QGRTGYP+VDAGMRELW TG + NRIR++
Sbjct: 297 FDHPDLHRHNLQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGAMQNRIRMV 356
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LLL WR G ++FWDTL+DAD + WQ+++G D R+ +P +QG
Sbjct: 357 TASFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPILQGE 416
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFDP+G YV +W+PEL+++P IH PW+A P L AAGV LG YP+PI+D RER
Sbjct: 417 KFDPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTYPEPIVDHKDARERA 476
Query: 478 TQA 480
A
Sbjct: 477 LAA 479
>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|386350987|ref|YP_006049235.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|346719423|gb|AEO49438.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
Length = 478
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 187/487 (38%), Positives = 258/487 (52%), Gaps = 29/487 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLG 63
+VWFR DLR+ DNPAL AA G+ V P Y P G +RWWL +SL+ L
Sbjct: 5 VLVWFRDDLRLADNPALCAALDSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGRSLTSLA 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+S+ G LVL + E+ L+A+ E + A + N LY SL RD + L G+
Sbjct: 65 ESIAQRGGRLVLRRGEA-LSAVPELAAETDAAALFANRLYGMDSL-RDDDLFMVLRVAGL 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASIL------PPWRLVQAA 177
+V+ ++ LL+ P + + G F F +W K L ++P L PP A
Sbjct: 123 TVRLFDSGLLHRPEAVTTKTGRPFRVFTPFW-KTLSATLDPGLPLAAPDSFPPVDDPPPA 181
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
S+ D LE + + L W PG + A L F + Y R +
Sbjct: 182 SD----SLADWSLEPTTPDWAGGLRDT-WQPGEAGAQARLEAFFNGPVADYASGRDRPDK 236
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP+L FGE+S R+V W + + FLR +G RE+ +L
Sbjct: 237 PLTSKLSPHLRFGEISPRQV----------WTAARHHPPGGGMDAFLRELGWREFCHHLL 286
Query: 298 FNFPFTHERPLLSNLKYFPW--HADLG-NFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
F P E PL + FPW ++G AW+ G TGYP+VDAGMRELW TGW+HNR+
Sbjct: 287 FQAPTMAEEPLKAEFLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRV 346
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+I +SF +K LL+PW+ G ++FWDTL+DA + GWQ+++G D R+ +P
Sbjct: 347 RMIAASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVT 406
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG +FDPEG YVR+WLPELA +P+ IH PW+APP +L+ AGV LG YP P+ID R
Sbjct: 407 QGERFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHAR 466
Query: 475 ERLTQAI 481
R +A+
Sbjct: 467 VRALEAL 473
>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
Length = 490
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 182/471 (38%), Positives = 246/471 (52%), Gaps = 16/471 (3%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFY--PGRVSRWWLKQS 58
G I+WFRRDLR+ DNPAL A G V PVY +EG G S WWL +S
Sbjct: 8 GPAPVILWFRRDLRLADNPALNKAHATGRPVVPVYI---HDEGTAVRPAGAASLWWLDKS 64
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L L SL GA L+L + +S L I A V N L++P + RD I L
Sbjct: 65 LRALAGSLAERGATLILRRGDSE-TELRRLIDQTGADTVFLNRLFEPEAWTRDADIAHGL 123
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
G+ + NG LL P + + G + F + K L+ Q EP + R + AA
Sbjct: 124 KTDGVECRGSNGSLLALPGSLLNGSGGPYKVFTPFM-KALRAQAEPPAHTTGPRQLGAAP 182
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
++ ++ GL S G W+PG A L FV L Y R +
Sbjct: 183 GLESDDLDAWGLHPTRPDWSK---GFDWTPGEDGATAALHRFVSGGLADYSNGRDRPAEP 239
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS LSP+LHFGE+S + W+ A E+ F + R++S +L
Sbjct: 240 ATSRLSPHLHFGEISPWRA----WIAARDAADGGKVTSGEADKFIAELI-WRDFSAHLLH 294
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP ++ PW D F AW +G TGYP+VDAGMRELWATG +HNR+R+IV
Sbjct: 295 HFPTLPDKAFRPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELWATGVMHNRVRMIV 354
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K LL+ WR G +FWDTL+DADL + WQ+++GS D R+ +P QG K
Sbjct: 355 ASFLIKDLLIDWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASPYFRIFNPVTQGQK 414
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
FD E YV++W+PELA +P WIH PW+APP +L+ G+ LG YP+PI+D
Sbjct: 415 FDAEARYVKRWIPELAPVPARWIHAPWNAPPEILRDCGIRLGTTYPRPIVD 465
>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
Length = 481
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 257/481 (53%), Gaps = 9/481 (1%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M + +VWFR LR+ D+PAL AAA G+ V Y + + G SRWWL QSL
Sbjct: 1 MSFSPIVVWFRESLRLSDHPALHAAATSGAPVICCYVYDTESAALRPLGGASRWWLAQSL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L L +LG +LV+ + S A+ E + V +N + ++ L
Sbjct: 61 RALQDELDALGVKLVIRRGPSA-KAISELAREASTSAVYWNDVAQTGPRAVAAEVEAALD 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+G+ + + DLL +P E+ + G F +W + L + P + P RL +G
Sbjct: 120 AIGVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLALGDPPKPLPVPVRLSSPSG- 178
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ +++ L LE S + L W G A L +F+E + Y +R + +
Sbjct: 179 VASLTVDKLALEPTSPDWAGGLRTT-WRAGERAAQARLAKFLETTVRGYAADRDRPDIEA 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FGE+S R+++ +A E+ + FL +G RE+SR+L FN
Sbjct: 238 TSRLSPHLRFGEISPRQIWHA-----ARFAAEQQPAFARGIDKFLSELGWREFSRHLLFN 292
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P R L + FPW D +AW++G+TGYP+VDAGMRELW TG +HNR+R++ +
Sbjct: 293 NPDLATRNLQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAA 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
S VK LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KF
Sbjct: 353 SLLVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D G YVR+W+PELAR+P IH PW A P L AGV LG +YP P++D GRER
Sbjct: 413 DSSGTYVRRWVPELARLPAALIHQPWAAKPLELAEAGVVLGRSYPAPVVDHRHGRERALA 472
Query: 480 A 480
A
Sbjct: 473 A 473
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 260/481 (54%), Gaps = 16/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFR+DLRI DNPAL AA G + G G S WWL +SL L Q
Sbjct: 15 VIVWFRKDLRIADNPALRHAADSGRPVVCLYILDETPGVRPMGAASLWWLDKSLKSLAQE 74
Query: 66 LKSLGAELVLFKTESTLAALLEC-ISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ LG LVL K A +L+ I+ AT VV+N LYD S+ RD +IK +L E G+
Sbjct: 75 LEKLGNRLVLRK--GVAADVLDALIAETGATGVVWNRLYDKASVDRDATIKARLKEAGVD 132
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS+N LL EPW + + G + F YW + + ++ ++ P ++++
Sbjct: 133 CQSFNAGLLNEPWTVQNGSGQPYKVFTPYW-RAARQHLDDVTVEPAPKVLRCLDK--AVR 189
Query: 185 IEDLGLEDESEKSSNALLGRG-WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
E L D + G W+PG + A L F+ + Y + R +TS L
Sbjct: 190 SEPLAAWDLHPTRPDWSKGFDLWTPGEAGARARLDAFLSGPITGYGEKRDIPSAPATSRL 249
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+ R+V W+ A+ + E+ F L +G RE++ + F++P
Sbjct: 250 SPHLHFGEIGPRQV----WLAARNAAEAGDIPTAEADKF-LSELGWREFNHSILFHWPQL 304
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R FPW D F+AW +G TGYP+VDAGMRELW TG++HNR+R+IV+SF +
Sbjct: 305 PARNFKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHNRVRMIVASFLI 364
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L++ WR G +FWDTL+DADL ++ WQ+ +GS D R+ +P QG KFDP G
Sbjct: 365 KHLMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNPISQGEKFDPRG 424
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
+YVR+W+PEL +P + IH PW+ P ++ AA Y KPI+D RER +A
Sbjct: 425 DYVRRWVPELKTVPDDVIHKPWERPLHLSPAA----RRIYAKPIVDHAKARERALEAYHS 480
Query: 484 M 484
+
Sbjct: 481 L 481
>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
Length = 503
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 259/480 (53%), Gaps = 9/480 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+VW R+DLR+ DNPAL AA+ G + VY + G+ G+ WWL SL L
Sbjct: 9 TLVWLRQDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACLWWLYHSLKSLRNQ 68
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L L++ + L E + + A + +N Y+P RD SI+EKL ++V
Sbjct: 69 LSQWNIPLIVKSGKDAFTILKELLDSYNADAIYWNRCYEPFEYNRDCSIEEKLKMENVTV 128
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
++Y +L+EPW I +G + +W++CL + +P + G C
Sbjct: 129 ETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCLSLP-QPRKPYDKPKFKNQTGCQSKC-- 185
Query: 186 EDLGLEDESEKSSNAL---LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++ + K S + L W PG A L F++ L Y + Q L N+TS
Sbjct: 186 DEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQCLRLNTTSN 245
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSPYLHFGE+S V+ + + + E ES+ +LR++G REY+ +L F++P
Sbjct: 246 LSPYLHFGEISPFTVWHSV--RHASSSAEPPAVKSESLKQYLRSLGWREYTCHLLFHYPD 303
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
++ S+ + D ++W+QG TGYP+VDAGMR+L G + NR+R+IV+SF
Sbjct: 304 LPQKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLRMIVASFL 363
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K LL+PW+ G ++FW L+DADL + WQ+ +GS P+ R+ +P QG KFD +
Sbjct: 364 IKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGSGPNACPYFRVFNPITQGEKFDAD 423
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
G YVR+W+PELA +P +IH PW+AP VLK A + LG YP+PI+ RE L A F
Sbjct: 424 GYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAARE-LALATF 482
>gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD1]
gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD1]
Length = 554
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 176/470 (37%), Positives = 262/470 (55%), Gaps = 23/470 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IV FRRDLR+ D+PAL+AA AR +V PVY P E+ + PG SRWWL SL+ L +
Sbjct: 82 AIVLFRRDLRLSDHPALSAACARHDAVLPVYVHAPDEDTAWAPGAASRWWLHHSLTSLDR 141
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ GA+L + + + T+A + A+ A V + Y+P ++ D ++K L GI+
Sbjct: 142 ALRQQGAQLHVMEGDPTIAVPM-LARAVGAQAVYWTRRYEPTAIACDTALKTTLRAEGIA 200
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP---PWRLVQAAGTID 181
S+ G L EPW + E G + F +W K L+ + LP P R + A G+I
Sbjct: 201 AHSHPGALWQEPWTLTTEAGQPYRVFTPFWRK-LRTSLSDCHPLPAARPRRWLTADGSI- 258
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
I+ +GL +A L W PG + A + L +FV++ L Y R TS
Sbjct: 259 --PIDAIGLLPPIRW--DAGLAEAWRPGEAGAWERLEQFVDEALAEYGDARDAPARMGTS 314
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS +LHFGE++ ++ + L + + + + FLR +G RE++ +L ++FP
Sbjct: 315 RLSAHLHFGEITPTQMLRTLQER----VARTSDSDRPDLEPFLRELGWREFAHHLLYHFP 370
Query: 302 FTHERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
T + + F W D + W+QGRTG PLVDAGMR+LW TGW+HNR+R+ V+S
Sbjct: 371 HTTDANFDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMAVAS 430
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K L WR G ++FWDTL+DADL + LGWQ+++G D R+ +P +Q ++FD
Sbjct: 431 FLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAARFD 490
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
P+ Y+++WLPEL+ +P + +H PW P L G YP P+IDL
Sbjct: 491 PDAAYLKRWLPELSGLPADVLHRPWKH-PAALAVCG------YPAPMIDL 533
>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
CB15]
gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
Length = 483
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 258/478 (53%), Gaps = 14/478 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ IVWFR+DLRI DNPAL AA+ G V P+Y + G G S WWL +SL L
Sbjct: 15 DAVIVWFRKDLRIADNPALRHAAQSGRPVIPLYI-LDETPGIRPMGGASLWWLDKSLKSL 73
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
SL++LG +LVL K + L + I+ A VV+N LYD S RD +IK L + G
Sbjct: 74 AASLETLGTKLVLRKGVAA-EVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRDRG 132
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+ QS+N LL EPW + + + F YW + + A P LV A
Sbjct: 133 VDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHLVAPARFPAS 192
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
S+ L S W+PG + A L F++ + Y R G +TS
Sbjct: 193 ESLASWNLHPTKPDWSKGF--DLWTPGEAGAHARLDAFLKGPIKGYGDQRDIPGVEATSK 250
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+ R+V W+ A + + E+ F L +G RE++ + +N+P
Sbjct: 251 LSPHLHFGEIGPRQV----WLATRSAADQGDIPLAEADKF-LSEIGWREFNHSILYNWPH 305
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
FPW D G +AW++G+TGYP+VDAGMRELW TG++HNR+R+IV+SF
Sbjct: 306 MPSANFKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIVASFL 365
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K L++ WR G +FWDTLLDADL ++ WQ+ +GS D R+ +P QG KFDP+
Sbjct: 366 IKHLMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEKFDPK 425
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+YVR+W+PEL + + IH PW P + L A L Y +PI+D + R R +A
Sbjct: 426 GDYVRRWVPELRNVSDDVIHKPWTKPLH-LPAGAKRL---YSRPIVDHAMARARALEA 479
>gi|189346874|ref|YP_001943403.1| deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
Length = 473
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 255/481 (53%), Gaps = 17/481 (3%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M N TI WFR+DLR+EDNP+L AA GSV PVY + G F G +RWWL SL
Sbjct: 1 MSDNLTIHWFRQDLRLEDNPSLYYAALKGSVLPVYILDDRNAGDFRMGGANRWWLHHSLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +SL+ L L + L L ++ ATKV +N Y+P + RD +K KL E
Sbjct: 61 SLNRSLQ---GRLTLLMGD-PLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLRE 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGT 179
GI+ +SYNG +L+EPWE++ G + F ++ K P LP P +L +
Sbjct: 117 QGITAESYNGSMLWEPWEVHKSDGTPYKVFTPFYRKGCLSAASPRMPLPLPVKLDCPSPP 176
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ +E LGL L W+ G + A + L F++ L Y + R +
Sbjct: 177 EESLPLEALGLLPRIRWDRQ--LEPHWTIGENGALERLAIFLKHGLPGYREGRDFPARPN 234
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S LSP LHFGE+S + W I + + F + RE+S L ++
Sbjct: 235 VSRLSPSLHFGEISPNQA----WHGAIAAGSGIDLD------HFQSELAWREFSYSLLYH 284
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P E+ L + FPW + W+QG TGYP+VDAGMRELW TG++HNRIR++
Sbjct: 285 NPGLPEKNLQKSFDRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYMHNRIRMVAG 344
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LLL W G +F D L DADL + WQ+I+G D R+ +P QG KF
Sbjct: 345 SFLVKNLLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIFNPVTQGQKF 404
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G Y R++LPELAR+P ++ PW+AP +VL AG+ G YP+PI+DL R + +
Sbjct: 405 DADGSYTRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDLKSSRRQALE 464
Query: 480 A 480
A
Sbjct: 465 A 465
>gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
Length = 483
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 178/471 (37%), Positives = 254/471 (53%), Gaps = 21/471 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I WFRRDLR+ D P L AA G V P + + ++ G SRWWL SL L +
Sbjct: 7 VIYWFRRDLRLTDLPGLHAALASGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQALTK 66
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
S+ G L L + T A L ++ A V + LY+P + + ++ E+L + G +
Sbjct: 67 SVAEQGGNL-LVRRGDTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELAKSGAA 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG----TI 180
+ G L + P E+ + G F F +W C MQ P+ LP ++
Sbjct: 126 LHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHC--MQRLPSMPLPQKTTFTTNSFLQHSL 183
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
G S E L +S + A W+PG + A + L +FV L Y + R +++
Sbjct: 184 TGLSCEQWQLLPDSPNWA-ADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDFPARDAS 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG--KESVTFFLRAMGLREYSRYLCF 298
S LS + H+GE+S R+ WA G ++ FL +G R+++ +L F
Sbjct: 243 SRLSAHFHWGEISPRQA----------WAAVNKAPGSNEKDQHKFLSELGWRDFNHHLLF 292
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP +RP + PW FKAW +GRTGYP+VDAGMRELW TG++HNR+R+I
Sbjct: 293 HFPHIADRPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRVRMIC 352
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K LLLPW+WG ++FWDTL+DADL + GWQ+++G D R+ +P +QG K
Sbjct: 353 ASFLTKHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPMLQGKK 412
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
FD +GEYVR+WLPELA + + PW+APP VL AGV LG +YP PI+D
Sbjct: 413 FDGDGEYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIVD 463
>gi|90415238|ref|ZP_01223172.1| putative photolyase [gamma proteobacterium HTCC2207]
gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
Length = 445
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 175/439 (39%), Positives = 247/439 (56%), Gaps = 16/439 (3%)
Query: 48 GRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVS 107
G SRWWL +L L KSL +L +F ++ LA L E +++ A V +N Y+P S
Sbjct: 15 GGASRWWLHHALQSLD---KSLDGKLNIFSGDA-LAILSELSASMSAKAVYWNRCYEPQS 70
Query: 108 LVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPAS 166
+ RD +IK +L E G+ VQS+NG LL+EPW++ + G + F Y+ + CLQ ++ P
Sbjct: 71 IERDANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLQ-KVAPRQ 129
Query: 167 ILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
LP + + + ++EDL L + L W A L +FV +
Sbjct: 130 PLPVPKTLDLVKADNSLTVEDLSLLPAIDWDKK--LHGDWDISEDGAKDRLDDFVFNGIQ 187
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
Y + R + S LSPY HFG++SV + L E N + FL
Sbjct: 188 DYREGRNFPNKKNVSRLSPYFHFGQMSVNTAWYAANDAAALIDNESNLDT------FLSE 241
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELW 345
+G RE+S YL ++FP L FPW + KAW++G+TGYPLVDAGMREL+
Sbjct: 242 LGWREFSYYLLYHFPKLPTDNLQQRFNVFPWAKNTDAELKAWQKGKTGYPLVDAGMRELY 301
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TG++HNR+R++V SF VK LL+ W G ++FWD L+DADL + WQ+I+G D
Sbjct: 302 GTGYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQWIAGCGADAAP 361
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFD +G+Y+R+ +PELA MP ++IH PW AP +VL AAGVE+G +YP
Sbjct: 362 FFRIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAPWLAPADVLAAAGVEIGTDYPA 421
Query: 466 PIIDLDLGRERLTQAIFKM 484
PIID+ RER A FKM
Sbjct: 422 PIIDIKESRER-ALAAFKM 439
>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris HaA2]
Length = 487
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 186/486 (38%), Positives = 263/486 (54%), Gaps = 17/486 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP------GRVSRWWLKQSL 59
IVWFR DLR+ D+PAL AAA GS ++ Q P G +RWWL QSL
Sbjct: 9 VIVWFRDDLRLSDHPALHAAAASGSPLICIYVHDEQSPQLRPPQARPIGGAARWWLAQSL 68
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHL-YDPVSLVRDHSIKEKL 118
L L+ GA L+L + + A + E + A V +N + P + D + E L
Sbjct: 69 RALAAELEQRGARLILRRGPAA-AIVGELARQVDAAAVHWNEIEIAPHRAIAD-DLAETL 126
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
GI + GDLL P EI + G F +W + L + +P LP +++A
Sbjct: 127 SMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLGLG-DPPKPLPAPAMLRAGP 185
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I LE + + L W+PG A +LT F+++ L Y +R + +
Sbjct: 186 DIASDDPATWQLEPTAPDWAGGLRA-SWTPGERAAHDLLTAFLDR-LPGYAADRDRPDRD 243
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSP+L FGE+S R+++ +A + + FL +G RE+ R+L
Sbjct: 244 ATSLLSPHLRFGEISPRQLWYA-----ARFAAAKRPAIAADIDKFLSELGWREFCRHLLH 298
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+ P ER L S FPW D AW++GRTGYP+VDAGMR+LW TG +HNRIR++V
Sbjct: 299 DHPDLAERNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVV 358
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG K
Sbjct: 359 ASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEK 418
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP G+YVR+W+PE+A +P ++IH PW A AAGV LG NYP PI+D +GR R
Sbjct: 419 FDPAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRARAL 478
Query: 479 QAIFKM 484
A ++
Sbjct: 479 AAYAEL 484
>gi|392953097|ref|ZP_10318651.1| Deoxyribodipyrimidine photo-lyase [Hydrocarboniphaga effusa AP103]
gi|391858612|gb|EIT69141.1| Deoxyribodipyrimidine photo-lyase [Hydrocarboniphaga effusa AP103]
Length = 478
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 256/484 (52%), Gaps = 15/484 (3%)
Query: 8 VWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKE-EGQFYPGRVSRWWLKQSLSYLGQS 65
+WFRRDLR+ DNPALA A V PVY P+ EG + PG SRWWL SL+ L
Sbjct: 1 MWFRRDLRLADNPALAHALGHAERVVPVYILPPEALEGAWTPGAASRWWLHHSLAALDAQ 60
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ GA+LV+ + LA L + A V +N Y+P + D + E L+E G+
Sbjct: 61 LRESGAQLVI-RQGDPLAQLRRLVGETGAEGVFWNRRYEPAWVKSDRRVGEALIEDGVEA 119
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
Q++ +LL EPW + G + + + + + I P R+ A I +
Sbjct: 120 QAFAANLLVEPWALKTGSGGPYRVYTPFSRSARALGLPRQPIPAPRRIPMPAKKIASDDL 179
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
L L L W+PG A L F + L Y R + TSLLSP
Sbjct: 180 ASLKLLPTIVWDGG--LVEAWTPGEDGAHARLDRFCRKALDGYAAGRDRPDQVLTSLLSP 237
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE++ Q L Q A E + R + RE++ ++ +FP T E
Sbjct: 238 HLHFGEITP---VQALARVQRELASESRAGLHGGAEVYERELYWREFAHHVLHHFPKTPE 294
Query: 306 RPLLSNLKYFPW-----HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P+ F W +AD + + W++G+TG P+VDAGMR+LW TGW+HNR+R+IV+S
Sbjct: 295 APMNERFAGFVWRKPREYAD--DLRRWQRGQTGVPIVDAGMRQLWTTGWMHNRVRMIVAS 352
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
+ VK LL+PW+ G ++FW TL+DADL + LGWQ+++G D R+ +P Q KFD
Sbjct: 353 YLVKNLLIPWQEGERWFWGTLVDADLANNTLGWQWVAGCGADAAPYFRIFNPVTQSQKFD 412
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEG Y+R W+PE+ ++P + +H PW A +L+ G LG +YP+P +DL R R +A
Sbjct: 413 PEGRYLRHWVPEIGKLPDKALHAPWLADAGLLRQHGFTLGQHYPRPAVDLGESRARALEA 472
Query: 481 IFKM 484
++
Sbjct: 473 FARI 476
>gi|327342158|gb|AEA50866.1| cry2-2 [Populus tremula]
Length = 226
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 150/226 (66%), Positives = 176/226 (77%)
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
IQGSKFDPEGEYVR+WLPELARMP EWIHHPWDA VLKAAGVELG+NYPKPIID+DL
Sbjct: 1 IQGSKFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLA 60
Query: 474 RERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSND 533
RERL +AIFKMWEMEAA A ++NGTNEVV DN+D + AIP+VVL++K TCPT SSND
Sbjct: 61 RERLMEAIFKMWEMEAAARASNTNGTNEVVVDNTDDTENLAIPKVVLKDKVTCPTNSSND 120
Query: 534 QKVPSFQNGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGAHDDFCSTAESSAAKRQ 593
Q+VP+ QN KN RKR K +EE+R PD+L++ AG S +D CSTAESS+AK+Q
Sbjct: 121 QRVPTNQNSKNIPAYRKRSKYMEEDRPQPDKLHNDDKVAGTSRKDEDLCSTAESSSAKKQ 180
Query: 594 TTTNISFSVPHSFSLSEGKALQEYRSSDVNRPWQEQIDREQNSSND 639
T+ SFSVP S SEGK LQE SSD+ +P Q QI+ EQ+SS D
Sbjct: 181 ATSRCSFSVPQYCSSSEGKPLQECESSDLRQPLQAQIEMEQSSSKD 226
>gi|452823604|gb|EME30613.1| deoxyribodipyrimidine photo-lyase / cryptochrome [Galdieria
sulphuraria]
Length = 1042
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 176/513 (34%), Positives = 270/513 (52%), Gaps = 27/513 (5%)
Query: 6 TIVWFR-RDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
++VWFR DLR++DNPAL AA R + ++ W P G++YP + WWL+ SL L
Sbjct: 108 SLVWFRGHDLRLDDNPALLAALERKTKCYAIFLWSPNSFGRWYPSKPWLWWLRSSLLVLE 167
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L LG +L L + L + I AT + +N Y+P+ L + + +
Sbjct: 168 RELIKLGVKL-LCRNGLAEEELPSVVREIGATVIFWNRAYEPIYLKAEERVISMFSGSTV 226
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM---EPASI-------LPPWRL 173
+ S+ +L EPWE+ ++ F F +Y + +Q+ EP SI LP L
Sbjct: 227 KLVSFKSELFVEPWELQNDHSPFFPDFHSYM-RAWMLQLPPPEPLSISKQYCTSLPYTEL 285
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
G +D S ED+ E+ +S N W PG A + L F+ ++ R
Sbjct: 286 ENQVGQLDLLSKEDI----EAFESKN-----NWKPGCRQAQRTLKAFLSDSFDKFGAARY 336
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LSP+L FGELSV+++F + K++ +E + ++ FL+ + LREY+
Sbjct: 337 RRSLTGTSKLSPHLKFGELSVKRIFYMV-RKRVANNRENWYLYSQAAKAFLKNLCLREYA 395
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + +P + PL S FPW D W G TGYP+VDA +REL +TGWIHN
Sbjct: 396 YHILYYYPNAIDTPLQSVFNLFPWERDYSLLDRWSVGHTGYPMVDAAIRELRSTGWIHNI 455
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R +++SF + LLLPW+ G + + L+D DL + LGWQ+ +G D L L +P
Sbjct: 456 LRFLLASFLTRYLLLPWQLGAHFLYSHLIDGDLAANTLGWQWTAGCNTDSFPLSCLVNPI 515
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G K+D G YVRQW+PELA + ++IH PW AP +VL A + LG YP PI+D+
Sbjct: 516 GMGRKYDSSGTYVRQWIPELASLQDKYIHCPWQAPEDVLANANITLGKTYPFPIVDVSFA 575
Query: 474 RERLTQAIFKMWEM---EAADNAMDSNGTNEVV 503
R R +A+ M ++ + ++ S N+V+
Sbjct: 576 RSRAKEALRIMRQVVDGQHLPKSLSSPTVNDVI 608
>gi|383783458|ref|YP_005468024.1| deoxyribodipyrimidine photo-lyase family protein [Leptospirillum
ferrooxidans C2-3]
gi|383082367|dbj|BAM05894.1| putative deoxyribodipyrimidine photo-lyase family protein
[Leptospirillum ferrooxidans C2-3]
Length = 483
Score = 301 bits (771), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 268/477 (56%), Gaps = 20/477 (4%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTW----CPKEEGQFYPGRVSRWWLKQSL 59
N +IVWFR+DLR++DNPAL +AR G + PVY W +EEG SRWWL +SL
Sbjct: 2 NTSIVWFRKDLRLKDNPALFHSARSGPILPVYIWDETLPEQEEG------ASRWWLHESL 55
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L +SL S G+ LV F ST L+ A K+V+N L +P + D S+K++L+
Sbjct: 56 LSLARSLSSTGSPLV-FARGSTKEVLVHFAKRSNAQKIVWNELTEPWAKTFDLSLKKELL 114
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAG 178
G+ V++Y DLL +P + + G + F +W K L+ ++P++ P P R+
Sbjct: 115 STGLKVETYPPDLLSDPESMMGKNG-PYRVFGQFW-KRLRPALDPSAPFPAPERIFPPEF 172
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
++ + + G + S + W PG A L F+++ L Y KNR +L
Sbjct: 173 SVISEYLPEWGW-NPSRPDWAKEMREKWIPGEEQAHMTLNTFLDERLQSYEKNRDRLDHE 231
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
S+LSP+LH GE++ R++ + K E+ + FL +G RE+SRYL
Sbjct: 232 GYSMLSPFLHAGEITSRQIVRATLDKM-----HEHPGWQNDGEKFLSELGWREFSRYLLI 286
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP P FPW + AW+ G+TGYP++DA MR+LWA G+I NR R+I
Sbjct: 287 HFPKMISEPFQPKFSSFPWKDNPEALLAWKSGKTGYPVIDATMRQLWAIGYIPNRSRMIS 346
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K LL+ W+ G ++F +TL+D DL + + WQ++SG D R+ +P +QG +
Sbjct: 347 ASFLTKDLLISWKEGARWFRETLVDHDLANNTVSWQWVSGMGVDAAPYFRIYNPVLQGER 406
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+DPEG +R+W+PE+ +P +WIH PW+AP +LK AG+ LG YP PI+D R+
Sbjct: 407 YDPEGIAIRKWIPEIKGLPNQWIHRPWEAPEPLLKRAGIILGKTYPAPIVDHSYARQ 463
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 259/478 (54%), Gaps = 14/478 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFR+DLRI D+ ALA A +G + P+Y P+ G G WWL SL L S
Sbjct: 20 ILWFRKDLRISDHAALATAVDEGFRIVPLYIREPEHAGTGPLGAAQAWWLHHSLEALSAS 79
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L +LGA LVL ++ + AAL + I+ A+ V +N YDP + D ++K KL+ GI V
Sbjct: 80 LDALGASLVL-RSGAADAALSDLITETGASAVFWNRRYDPSGISVDKALKAKLIADGIEV 138
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+++ G +L+EP ++ G F + +W K L EP +P + + A
Sbjct: 139 RTFAGQILHEPTKLKTGAGGHFRVYTPFW-KALDGSGEPPEPIPAPKALPAPEHWPKS-- 195
Query: 186 EDLGLEDESEKSSNALLG--RGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
E L D N G W PG A K L +F+ L Y R G S+L
Sbjct: 196 EKLSDWDLLPTKPNWAKGFESEWQPGEDGARKRLADFIASGLKGYRTRRDFPGEAHVSML 255
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L GE+S V+ ++ E+ F + + R++S +L F+FP
Sbjct: 256 SPHLALGEISPASVWHATRGLSDSYSSEDYIH-------FRKELVWRDFSYHLLFHFPDL 308
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ + FPW + WR+G+TGYP++DAGMR+LW TG++HNR+R+IV+SF +
Sbjct: 309 ATKNWNTKFDAFPWRHAPDLLEKWRKGQTGYPIIDAGMRQLWQTGFMHNRVRMIVASFLI 368
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++F DTL+DAD + WQ+++GS D R+ +P QG KFDPEG
Sbjct: 369 KDLLIDWREGERWFRDTLVDADPASNAASWQWVAGSGADAAPFFRIFNPISQGEKFDPEG 428
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR+++PEL MP ++IH P+DAP VLK AGV LG YP+PI+D R+ A
Sbjct: 429 AYVRRFVPELKAMPDKFIHKPFDAPFAVLKEAGVSLGKTYPQPIVDHGKARDAAMAAF 486
>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisA53]
gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisA53]
Length = 483
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 260/480 (54%), Gaps = 17/480 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++VWFR DLR+ D+PAL AAA G V +Y + G G +RWWL QSL L Q
Sbjct: 9 SLVWFRDDLRLSDHPALNAAASSGRPVLCLYVLDEQSPGGRPLGGAARWWLAQSLRSLQQ 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV----E 120
L GA L+L + + A ++ ++ +VV+ Y+ +++ ++ +L +
Sbjct: 69 ILSERGATLMLRRGAA--AQVVAGLARETNAEVVY---YNDIAMAPARTVAAELAATLAD 123
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI+V + GDLL P I + G F +W + L + +PA LP +
Sbjct: 124 HGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLG-DPAKPLPAPTALGPPPAA 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
++D LE + + L W PG + A + LT+F+ + Y +R + T
Sbjct: 183 ASDRLDDWALEPTAPDWAGGLRA-AWQPGEAAAQRALTDFLTTGIAGYAGDRDRPDRPGT 241
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSP+L FGE+ R+++ V FL +G RE+ R+L F+
Sbjct: 242 SLLSPHLRFGEIGPRQIWHAARFAAAARPAIAG-----DVDKFLSELGWREFCRHLLFDH 296
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
R L FPW D +AW++G TGYP+VDAGMR+LW TG +HNR+R++V+S
Sbjct: 297 SDLATRNLQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRVRMVVAS 356
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G ++FWDTL+DAD + WQ+++G D R+ +P +QG KFD
Sbjct: 357 FLVKHLLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPILQGEKFD 416
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+++PELAR+P IH PW A P L +AGV+LG NYP+PII+ GRER A
Sbjct: 417 PDGAYVRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPIIEHRRGRERALAA 476
>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
Length = 477
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 254/473 (53%), Gaps = 16/473 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TIV FRRDLR+ DN ALAAAA G V +Y +G G SRWWL SL+ LG
Sbjct: 9 TIVLFRRDLRMGDNAALAAAAERGVPVVALYILDETTKGLRAMGAASRWWLHHSLAALGD 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ GA L L T A+ + I A A V +N YDP + D +K L E G++
Sbjct: 69 LLRKAGANLFLAHGR-TEDAVAKAIDASGANCVFWNRRYDPSEVAVDARLKAALREKGLT 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
S++G LL+EP + G + F +W I P ++ G + G
Sbjct: 128 ALSFDGALLHEPSLLKTGSGGFYKVFTPFWKAMADKVDVRDPIDTPGQIDGWRGELGGLR 187
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+++L L + L W+PG A L +F+E L Y + R G STS LS
Sbjct: 188 LDELDLLPSKPDWAYGLR-ETWTPGEKGAQARLGQFIEHGLANYERQRDYPGQPSTSRLS 246
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA-MGLREYSRYLCFNFPFT 303
P+L FGE++ ++F L K S T RA +G RE+S +L F+ P
Sbjct: 247 PHLTFGEITPFQIFAAL------------RRSKSSGTSKFRAEIGWREFSYHLLFHNPDL 294
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R W D+ + W++G TGYP+VDAGMRELW TGW+HNR+R+IV+SF +
Sbjct: 295 SGRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMIVASFLI 354
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L++ WR G K+FWDTL+DAD + WQ+++GS D R+ +P +QG KFDP G
Sbjct: 355 KDLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGEKFDPHG 414
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+YVRQ +PE++ +P +IH PW+AP VLK G+ LG YP PI+D RER
Sbjct: 415 DYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARER 467
>gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|337741487|ref|YP_004633215.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
gi|386030503|ref|YP_005951278.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|336095571|gb|AEI03397.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|336099151|gb|AEI06974.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
Length = 487
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 254/485 (52%), Gaps = 10/485 (2%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDGS---VFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
+ IVWFR DLR+ D+ ALAAAA G+ + + + G ++WWL SL
Sbjct: 8 ASSVIVWFRNDLRLSDHAALAAAAGTGAPLICLFILDEAAAQSARRPLGAAAKWWLANSL 67
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L + L+ G L+L + + T L++ KA V + P + L
Sbjct: 68 RTLDRELRKRGQRLILRRGD-TATILVQIAQEAKAKAVFWLDSEIPAEAACARQVITALH 126
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
E+G+ DLL P I ++ GH F +W + + P + +L + +
Sbjct: 127 EIGVETHISRSDLLASPSMIRNKEGHGLRVFTPFWKRVRALGDPPPPLPAMKKLPPSVAS 186
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
++ SIED LE + L R W PG + A K L F++ + Y R L +
Sbjct: 187 VESESIEDWQLEPLHPDWAGGLRAR-WKPGEAGARKKLDAFLDDAIDGYASGRDDLARDQ 245
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS +L FGE+S R+VF +A N V FL +G RE+ R+L F+
Sbjct: 246 TSHLSAHLRFGEISPRQVFHA-----TRFAAAHNPALSHDVEKFLSELGWREFCRHLLFD 300
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P H + L + FPW D AW+QGRTGYP+VDAGMRELW TG +HNR+R++ +
Sbjct: 301 QPDLHRQDLQPSFDNFPWRTDRAALSAWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVAA 360
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G ++FWDTL+DAD + WQ+++G D R+ +P +QG KF
Sbjct: 361 SFLVKHLLIDWREGERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEKF 420
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G YV +W+PELA++P + IH PW+A P L AAG+ LG YP PI+D RER
Sbjct: 421 DPDGAYVMKWVPELAKLPPKLIHQPWEATPMELAAAGITLGKTYPAPIVDHKAARERALA 480
Query: 480 AIFKM 484
A KM
Sbjct: 481 AYRKM 485
>gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
Length = 472
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 264/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ ++ ++ L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 64 ALRALGSGLVI-RSGNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA++ P RL ++ +
Sbjct: 123 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLPASLKTDA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 183 LDTLQLVPGLQWDQG--FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRIASTL-------ETHRTARNGAEIDAYIRQLGWRDFAYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 294 NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 354 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + A YP+ PII L GR+ A
Sbjct: 414 AYITRWVPELGKLAVKERFAPWLHPLSLARFAP-----EYPRNPIIGLAEGRDAALAAYA 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 174/482 (36%), Positives = 257/482 (53%), Gaps = 13/482 (2%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + I WFR+DLR+ DNP+L AAA+ G V P++ G G R WL +L+
Sbjct: 1 MASSIIIHWFRQDLRLADNPSLVAAAQAGDVLPLFILDDDNAGDHKTGAAGRSWLHHALN 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL +L + + + + + + ++ + A+ V +N Y+P + RD +K L
Sbjct: 61 ALNMSLD---GKLCVMRGDP-VDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKTNLTN 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGT 179
I V+S+NG LL+EPW + G + F ++ + CL + P + A
Sbjct: 117 NNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQLVADP 176
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
SI+ L L + + A + W G + A L +FVE L Y R
Sbjct: 177 ESSMSIDALNLLPDHDWG--AKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPARPH 234
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS +LH+GE+S W I + F+ + FL +G RE+S L ++
Sbjct: 235 TSRLSAHLHWGEISPNMA----WYAAIEKRDQAGFD--NDIDVFLSELGWREFSHSLLYH 288
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP + L FPW +D +AW+QG+TGYP++DAGMRELW TG++HNR+R+IV
Sbjct: 289 FPHLPRQNLQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVG 348
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LLL W G +FWD L+DADL + GWQ+I+G D R+ +P QG+KF
Sbjct: 349 SFLVKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKF 408
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G Y R+++PELA +P +++ PW+AP L+AAG+ LG +YP PI+D+ RE
Sbjct: 409 DADGSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSREAALA 468
Query: 480 AI 481
A
Sbjct: 469 AF 470
>gi|407973400|ref|ZP_11154312.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
gi|407431241|gb|EKF43913.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
Length = 489
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 261/476 (54%), Gaps = 21/476 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T+V FR DLR+ DN AL+AAA G V + + EG G RWWL SL L
Sbjct: 17 TLVLFRHDLRLADNLALSAAADCGRPVVAAFILDEESEGMRPLGGARRWWLHHSLCALAG 76
Query: 65 SLKSLGAELVLFK---TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L LGAELVL + E+T+A E +A V +N Y+P ++ D +K L E
Sbjct: 77 RLSDLGAELVLRRGRMAETTVALARETGAAT----VFWNRRYEPAAIHADKKMKAALREN 132
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ--MQMEPASILPPWRLVQAAGT 179
GI+ +S+ G LL+EPW I G + F +W + + EPA P +L G
Sbjct: 133 GIAAESFTGQLLHEPWRIKTGSGGFYRVFTPFWRTLSEGFVPREPADA--PEKLSVFKGD 190
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
++ ++D L + L + W+PG + A K L F++ Y R ++ +
Sbjct: 191 VESDRLDDWQLLPTRPDWAGGLR-KAWTPGETGAHKRLEAFLDGGGKGYETLRDRMASEA 249
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L GE++ +++Q L + N + F + +G RE+ +L F+
Sbjct: 250 TSSLSPHLSHGEITPYQIWQHL--------EHRNDLTPGDLQTFRKELGWREFCWHLLFH 301
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P + S+ FPW+ D G +AW++GRTGYP+VDA MR+LW TGW+HNR R+IV+
Sbjct: 302 NPQLAAKNFNSDFDAFPWNRDDGALQAWQRGRTGYPVVDAAMRQLWQTGWMHNRARMIVA 361
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK L L WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KF
Sbjct: 362 SFLVKDLRLDWREGEQWFWDTLVDADPASNPANWQWVAGSGADAAPYFRIFNPVLQGEKF 421
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
D G+Y+R+++PEL +P++ IH PW A LK AG+ LG YP+P++D RE
Sbjct: 422 DSGGDYIRRYVPELENLPSKGIHKPWKAKGEALKKAGITLGKTYPEPMVDHATARE 477
>gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
8004]
gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 484
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 173/473 (36%), Positives = 258/473 (54%), Gaps = 18/473 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEGQ+ PG SR W +SL+ L
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHDPIPLYIDAPHEEGQWAPGAASRAWRHRSLAALDA 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ G+ L++ + +S L I+ +A V +N Y+P + RD IK L E G+
Sbjct: 76 SLRARGSALLIRQGDSA-QVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLRERGLE 134
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW + ++G + F +W L P ++ P L ++DG
Sbjct: 135 VQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLPASLDGVH 194
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L W PG + A ++L FV+ L Y +NR + TS LS
Sbjct: 195 VDALNLLPTPAWDQG--FWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVGTSQLS 252
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + + ++R +G R+++ +L +FP T
Sbjct: 253 PHLHFGEIAPWRIASTL-------EAQRSARNGADIDGYIRQLGWRDFAYHLLHHFPDTT 305
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D AW++GRTG P+VDAG+R+LW TGW+HNR+R+IV+S
Sbjct: 306 TQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASLLC 365
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 366 KHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 425
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRE 475
Y+ +W+PELA +P + PW P ++ + L YP+ PII L GR+
Sbjct: 426 TYITRWIPELAALPVKERFAPWLHPLSLAR-----LAPTYPRAPIIGLAEGRD 473
>gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
Length = 476
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 182/484 (37%), Positives = 260/484 (53%), Gaps = 32/484 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P EEG++ PG S W +SL+ L
Sbjct: 9 ALVWFRRDLRLQDNPALQAALEAGHEVVPVYIHAPHEEGEWVPGAASDAWRHRSLAALDA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+S G+ LVL +S LA L + I A V +N Y+P + RD IK L E GI
Sbjct: 69 DLRSRGSSLVLRHGDS-LATLQALVEQIGAEAVYWNRKYEPATQPRDAEIKRTLREHGID 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L PA P L A DG +
Sbjct: 128 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLPALTAAPKALT--AHKADGLA 185
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+++L L + S + W PG + A + L+ F + L Y + R TS +S
Sbjct: 186 LDELRLAPTLDWDSG--FWQHWRPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRMS 243
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES------VTFFLRAMGLREYSRYLCF 298
P+LHFGE++ ++ L EG S + +LR +G R+++ +L
Sbjct: 244 PHLHFGEIAPWRIAHAL-------------EGLRSAGTDADIDGYLRQLGWRDFAYHLLH 290
Query: 299 NFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+FP T L FPW + W++G TG P+VDAG+RELW TG++HNR+R+I
Sbjct: 291 HFPKTPTDNLNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMI 350
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+S+ K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q
Sbjct: 351 VASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 410
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRER 476
KFDP+ Y+ +W+PELA +P + PW P +L A YP+ P++DL +GR+
Sbjct: 411 KFDPQARYISRWVPELAALPVKARFAPWQH-PQLLAAHAP----GYPRTPLVDLAVGRDA 465
Query: 477 LTQA 480
QA
Sbjct: 466 ALQA 469
>gi|188992258|ref|YP_001904268.1| photolyase [Xanthomonas campestris pv. campestris str. B100]
gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris]
Length = 520
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 173/473 (36%), Positives = 258/473 (54%), Gaps = 18/473 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEGQ+ PG SR W +SL+ L
Sbjct: 52 AIVWFRRDLRLEDNPALRAALDAGHDPIPLYIDAPHEEGQWAPGAASRAWRHRSLAALDA 111
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ G+ L++ + +S L I+ +A V +N Y+P + RD IK L E G+
Sbjct: 112 SLRARGSALLIRQGDSA-QVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLRERGLE 170
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW + ++G + F +W L P ++ P L ++DG
Sbjct: 171 VQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLPASLDGVH 230
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L W PG + A ++L FV+ L Y +NR + TS LS
Sbjct: 231 VDALNLLPTPAWDQG--FWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVGTSQLS 288
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + + ++R +G R+++ +L +FP T
Sbjct: 289 PHLHFGEIAPWRIASTL-------EAQRSARNGADIDGYIRQLGWRDFAYHLLHHFPDTT 341
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D AW++GRTG P+VDAG+R+LW TGW+HNR+R+IV+S
Sbjct: 342 TQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASLLC 401
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 402 KHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 461
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRE 475
Y+ +W+PELA +P + PW P ++ + L YP+ PII L GR+
Sbjct: 462 TYITRWIPELAALPVKERFAPWLHPLSLAR-----LAPTYPRAPIIGLAEGRD 509
>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
Length = 478
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 178/466 (38%), Positives = 246/466 (52%), Gaps = 10/466 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+W R DLR +DNPA+ AA G+ V +Y G F G RWWL SL +
Sbjct: 5 VILWLREDLRFDDNPAMREAAASGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAFKE 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G L+L + + T + IKA+ V +N Y D IK L ++GI
Sbjct: 65 DLETRGGALILRRGKET-EIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQDMGIK 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
S NG LLYEPWEI + G + + YW K LQ + P + LP + A ++
Sbjct: 124 GISCNGRLLYEPWEIETKSGDPYKVYTPYW-KSLQQKEGPRAALPRTDKLNAPPSLPSTD 182
Query: 185 -IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++D L S + W+PG A L +++ Y R + + TS L
Sbjct: 183 RLDDWNLLPRSPNWAEGF-EPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQDRTSRL 241
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S LW + A E K+ T FL + RE+S L + P
Sbjct: 242 SPHLHFGEISP----VVLW-HSVSDAMEAGDIPKDQGTSFLSEIAWREFSYQLLYYHPTM 296
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
++PL+ F W D AW++GRTGYP+VDAGMR+LW GW+HNR+R+IV SF V
Sbjct: 297 RDQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFLV 356
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLL WR GM++FWD L+DAD + WQ+I+G D R+ +P Q KFDP+G
Sbjct: 357 KDLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFDPDG 416
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Y+R+++PEL +PT +IH P A +LK AG+ LG YP PI+D
Sbjct: 417 AYIRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVD 462
>gi|418515773|ref|ZP_13081952.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
gi|418520050|ref|ZP_13086101.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410704710|gb|EKQ63192.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410707682|gb|EKQ66133.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
Length = 472
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 262/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ + ++ L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 64 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA+I P L ++ +
Sbjct: 123 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLPASLKTDA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 183 LDTLQLVPGLQWDQG--FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRIASTL-------ETHRTARNGAEIDAYIRQLGWRDFAYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 294 NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 354 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + L YP+ PII L GR+ A
Sbjct: 414 AYITRWVPELGKLAVKERFAPWLHPLSLAR-----LAPEYPRTPIIGLAEGRDAALAAYA 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|381170327|ref|ZP_09879485.1| DNA photolyase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|390989717|ref|ZP_10260012.1| DNA photolyase family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555581|emb|CCF66987.1| DNA photolyase family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|380689197|emb|CCG35972.1| DNA photolyase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 472
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 262/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ + ++ L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 64 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA+I P L ++ +
Sbjct: 123 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLPASLKTDA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 183 LDTLQLVPGLQWDQG--FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRIASTL-------ETHRTARNGAEIDAYIRQLGWRDFAYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 294 NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 354 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + L YP+ PII L GR+ A
Sbjct: 414 AYITRWVPELGKLAVKERFAPWLHPLSLAR-----LAPEYPRTPIIGLAEGRDAALAAYA 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|407776584|ref|ZP_11123857.1| DNA photolyase [Nitratireductor pacificus pht-3B]
gi|407301875|gb|EKF20994.1| DNA photolyase [Nitratireductor pacificus pht-3B]
Length = 487
Score = 298 bits (763), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 175/471 (37%), Positives = 249/471 (52%), Gaps = 13/471 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++ FR DLR+ DN ALAAAAR G + V+ EG PG RWWL SL LG+
Sbjct: 15 LILFRHDLRLTDNRALAAAARSGRPLAAVFILDETSEGTRPPGGARRWWLHHSLKALGED 74
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LG L+L + A+ + + A V +N YDP + D +K L + GI
Sbjct: 75 LGRLGIRLILQRGPMADTAM-RLAARLNAGAVYWNRRYDPPGIAADTRMKASLRDAGIEA 133
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCS 184
+S+ G LL+EPW + G + F +W + LQ +EP A P RL A +
Sbjct: 134 ESFEGHLLHEPWRLKTGAGGPYRVFTPFW-RALQQSIEPHAPADRPHRLNAADHDVASDP 192
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L S L + W+PG + A + L F+ Y + R L TS LS
Sbjct: 193 LDQWELLPSKPDWSGGLAAQ-WTPGEAGARERLDAFLAGGGTGYDRRRDVLADAGTSSLS 251
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L GE+S +++ L L A + F + +G RE+ +L F+ P
Sbjct: 252 PHLAHGEISPWQIWSALEAGHELPAGD--------AQTFRKELGWREFCWHLLFHNPDLA 303
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
R + FPW D +AW++G+TGYP+VDA MR+LW TGW+HNR R+IV+SF VK
Sbjct: 304 TRNFNRDFDAFPWQRDDKALRAWQRGQTGYPVVDAAMRQLWQTGWMHNRARMIVASFLVK 363
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L L WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KFDP+G
Sbjct: 364 DLRLDWRSGEEWFWDTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGEKFDPDGA 423
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
YV +++PEL +P +IH PW+A L AG+ LG YP P++D R+
Sbjct: 424 YVHRFVPELRNLPKRYIHKPWNATAAALSEAGIRLGETYPAPMVDHGTARQ 474
>gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
Length = 484
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 262/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ + ++ L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 76 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 134
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA+I P L ++ +
Sbjct: 135 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLPASLKTDA 194
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 195 LDTLQLVPGLQWDQG--FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 252
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++R +G R+++ +L +FP T
Sbjct: 253 PHLHFGEIAPWRIANTL-------ETHRTARNGAEIDAYIRQLGWRDFAYHLLHHFPDTT 305
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 306 NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 365
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 366 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 425
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + L YP+ PII L GR+ A
Sbjct: 426 AYITRWVPELGKLAVKERFAPWLHPLSLAR-----LAPEYPRTPIIGLAEGRDAALAAYA 480
Query: 483 K 483
K
Sbjct: 481 K 481
>gi|78047092|ref|YP_363267.1| photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 500
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 263/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 32 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 91
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ +S L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 92 ALRALGSGLVIRSGDSA-QVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 150
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA++ P RL ++ +
Sbjct: 151 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLPASLKTDA 210
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 211 LDTLQLVPGLQWDQG--FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 268
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L A G E + ++R +G R+++ +L +FP T
Sbjct: 269 PHLHFGEIAPWRI------ASTLEAHRTARNGAE-IDGYIRQLGWRDFAYHLLHHFPDTT 321
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 322 NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 381
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP
Sbjct: 382 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPHA 441
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P + + A YP+ PII L GR+ A
Sbjct: 442 TYITRWVPELGKLAVKERFAPWLHPLALARFAP-----EYPRNPIIGLAEGRDAALAAYA 496
Query: 483 K 483
K
Sbjct: 497 K 497
>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
Length = 479
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 171/471 (36%), Positives = 254/471 (53%), Gaps = 12/471 (2%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M + +VWFR DLR+ DNPAL AA R G + +Y + EG G +RWWL ++L
Sbjct: 1 MPASPALVWFRDDLRLADNPALHAAQRSGRPLVLLYLLDEESEGIRPLGGAARWWLGRAL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ + +++++ G +L+L + ++ + + KA + +N Y + D ++K +L
Sbjct: 61 ASVTEAIEAKGGQLILRRGKAG-EVVPAVAAEAKAGAIYWNRRYGAAEIAVDAALKTELA 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-PASILPPWRLVQAAG 178
+ G+ V+S+NG LL+EPW + + G F F ++ Q + PA + W +
Sbjct: 120 QKGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPFYRNAAQHDIRRPARVGSHWHFAE--- 176
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
T G + D LE + + L W PG L FV+ L Y R +
Sbjct: 177 TPAGDELRDWKLEPTTPDWAGGLR-ESWIPGEDGGRAALAAFVDGGLRSYAAGRDRPDME 235
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSPYL FG LS ++V + A + V F+ + RE+S +L F
Sbjct: 236 HTSRLSPYLRFGHLSPQQVLAA-----VRHAADAGEVRGTDVEKFVSELYWREFSYHLLF 290
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP + F W+ D +AW++G TGYPL+DAGMR+LW TGW+HNR+R++
Sbjct: 291 HFPDLAQVNFNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRMVA 350
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K L+ WR G +FWDTL+DAD + WQ+++GS D R+ +P QG K
Sbjct: 351 ASFLIKHALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQGEK 410
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
FDP+G YVR+++PELA +P IH PW APP VL AGV LG YP PI+D
Sbjct: 411 FDPDGAYVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVD 461
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/447 (38%), Positives = 256/447 (57%), Gaps = 15/447 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TI WFR+DLR+ DNPAL AA+ + P+Y ++ G RWWL SLS L
Sbjct: 3 TIFWFRQDLRLSDNPALVEAAKSADHLIPLYI---LDDQLKMLGDAQRWWLHHSLSSLQT 59
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L K T LLE I K K+ +N Y+P D ++ +L L S
Sbjct: 60 ALSKKGTSLIL-KKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPPL--S 116
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+ Y+ LL EP +I ++ G + F +W K + ++P L + I +
Sbjct: 117 VEIYHSTLLTEPQKIKNKSGGYYKIFTPFW-KHINASLQPRKTLAAPKKFSQHRAIKSDN 175
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E L + S W PG NA VL +F++++L Y +R + +STS LS
Sbjct: 176 LETWNLLPKHPDWSQGF--DQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHLS 233
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYLHFGE+S+R+V+ + I +++N + V FLR + RE++ YL ++FP
Sbjct: 234 PYLHFGEISIRQVWTAITQATI---QDKNLQKAADV--FLRQLIWREFAYYLLWHFPQMG 288
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ + F W + +AW++G TGYP+VDAGMRELW TG++HNR R+IV+SF VK
Sbjct: 289 KSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVK 348
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L++ WR G K+FW+TLLDADL + LGWQ+I+G D R+ +P +Q KFDP+G
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDGT 408
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNV 451
Y+++W+PELA++P+++IH+P D P N+
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNI 435
>gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 484
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 262/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ + ++ L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 76 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 134
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA++ P L ++ +
Sbjct: 135 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLPPLPASLKTDA 194
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 195 LDMLQLVPGVQWDQG--FWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 252
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++R +G R+++ +L +FP T
Sbjct: 253 PHLHFGEIAPWRIASTL-------ETHRTARNGAEIDGYIRQLGWRDFAYHLLHHFPDTT 305
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 306 NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 365
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 366 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 425
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + A YP+ PII L GR+ A
Sbjct: 426 AYITRWVPELGKLAVKERFAPWLHPLSLARVAP-----QYPRAPIIGLAEGRDAALAAYT 480
Query: 483 K 483
K
Sbjct: 481 K 481
>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 478
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 173/472 (36%), Positives = 256/472 (54%), Gaps = 15/472 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTW-CPKEEGQFYP-GRVSRWWLKQSLSYLG 63
TIVWFR+DLR+ DNPAL A R G V PVY P + G +P G SRWWL SL+ L
Sbjct: 3 TIVWFRQDLRVSDNPALHEATRRGPVLPVYILETPDQSGDEHPLGGASRWWLHHSLAALK 62
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L L +F S + E + A V +N Y+P ++ RD ++KE L I
Sbjct: 63 EDLPGL-----VFLRGSARHLIPELVQETGADAVYWNRCYEPHAIERDSALKESLKTDLI 117
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+S+ LL+EPW++ + G + + +W ++ + LP + G
Sbjct: 118 DAKSFKASLLFEPWDVETKTGGPYKVYSPFWKAAQKISV--PDPLPAPAEINFTAYDRGD 175
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++ DL L + W PG + A L EF++ L Y R + + S L
Sbjct: 176 NLSDLELLPTKPNWAEGWEDI-WQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLPNVSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFG++S ++V+ Q A++ + FL + RE+S +L +++P
Sbjct: 235 SPHLHFGDISPKQVWSA---TQHATARKSSLSSDGHK--FLSEIAWREFSYHLLYHYPQL 289
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
E+ +PW + K W+ G TGYP+VDAGMRELW TG++HNR+R++ SF V
Sbjct: 290 PEKNWRPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSFLV 349
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L L W+ G +F DTL+DADL + WQ+++GS D R+ +P QG KFDP+G
Sbjct: 350 KHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFDPDG 409
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+YVR+W+PELA++PT+ + P++AP +VL AGV LG YP PI+D R+
Sbjct: 410 KYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIVDHGKARQ 461
>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
Length = 483
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 182/484 (37%), Positives = 256/484 (52%), Gaps = 10/484 (2%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
G IVWFR DLR+ D+PAL AAA+ G+ V VY + G +RWWL QSL
Sbjct: 6 GSRPVIVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDEVRALGGAARWWLAQSLR 65
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L L++ GA L+L + + A L E A V +N + ++ + L
Sbjct: 66 SLEAELRAAGALLILRRGPAA-AVLAELAQQSDAAAVHWNEIEIAPHRAVADALADALTM 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI+ ++GD L P I + G F +W + L + +P LP ++ A +
Sbjct: 125 AGIAYHRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLSLG-DPPQPLPRPAALRPAPAL 183
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
G + D LE + + L W PG + A L +F+ + L Y + R + T
Sbjct: 184 PGAQLSDWQLEPTAPDWAGGLRAT-WRPGEAAAKTRLADFLAR-LPGYAEGRDYPDRHVT 241
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYL FGE+S R+V+ +A E + FL +G RE+ R+L +
Sbjct: 242 SGLSPYLRFGEISPRQVWYA-----ARFAAAERPAIAPDIDKFLSELGWREFCRHLLADH 296
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L FPW +D G AW++GRTGYP+VDAGM ELW +G +HNR+R++V S
Sbjct: 297 PDLAARNLQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSGVMHNRVRMVVGS 356
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G ++FWDTL+DAD + WQ+++G D R+ +P +Q KFD
Sbjct: 357 FLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFD 416
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+G Y+R+WLPELA +P IH PW A P L AAGVELG NYP+PI+D R+R A
Sbjct: 417 ADGAYIRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIVDHKAARQRALSA 476
Query: 481 IFKM 484
++
Sbjct: 477 YSEL 480
>gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
19865]
gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
19865]
Length = 472
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 263/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR++DNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHAPIPLYIDAPHEEGEWAPGAASRSWRHRSLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ +S L E I A V +N Y+P + RD IK L E GI
Sbjct: 64 ALRALGSGLVIRAGDSA-QVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIKRSLRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL EPW++ ++G + F YW L PA++ P L T+ +
Sbjct: 123 VQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPALPATLKSAA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E LGL + + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 183 LETLGLVPKLDWDQG--FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L N + ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRIASTL-------EANRNARNSAEIDGYIRQLGWRDFAYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L + F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+S
Sbjct: 294 NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASLLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FW+TL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 354 KHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW +P ++ + A YP+ PII L GR+ A
Sbjct: 414 AYITRWVPELGKLAVKERFAPWLSPLSLARFAP-----KYPRTPIIGLAEGRDAALAAYA 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
Length = 475
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 175/482 (36%), Positives = 264/482 (54%), Gaps = 13/482 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+ WFR+DLR+ DNPAL +A D S ++ + + Q G + WL +SL L
Sbjct: 2 NLCWFRQDLRLSDNPALRSALSDNSAIALFI-LEETDTQRPMGSACKAWLHESLIRLQSD 60
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+++G LVL + ++ + + S +K V +N YDP + D ++ E L E G++V
Sbjct: 61 LEAIGVPLVLRRGDAR-DIIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLKEEGVNV 119
Query: 126 QSYNGDLLYEPWEIYDE-RGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+S+ ++L+EPWEI G + F +W L+ + S+ P + +Q+ +D
Sbjct: 120 ESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPAQSLAVPTK-IQSKPQLDQLP 178
Query: 185 IEDLGLEDESEKSSNALLG--RGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++L D S N G W PG + A + EF+E +L Y +NR N TS
Sbjct: 179 FDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGYSQNRDVPSKNHTSC 238
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+L FGE+S +++ + E + +G + FL +G RE+S + F
Sbjct: 239 LSPHLRFGEISPLQIWHGVHAHS---GGEVDKDGYK----FLAEVGWREFSHSILFYADN 291
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ S+ F W D AW+ G+TGYPLVDAGMRELW TG+IHNR+R++V+SF
Sbjct: 292 LSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIHNRVRMVVASFL 351
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K L + WR G +FWDTL+DA + WQ+++GS D R+ +P +Q KFDP+
Sbjct: 352 IKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFNPIMQSEKFDPK 411
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
G Y+R+W+PELA + + IH PW+AP VL+ GV LG NYPKPI+D R++ A
Sbjct: 412 GSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHKTARDKALAAYK 471
Query: 483 KM 484
M
Sbjct: 472 DM 473
>gi|384427365|ref|YP_005636723.1| photolyase [Xanthomonas campestris pv. raphani 756C]
gi|341936466|gb|AEL06605.1| photolyase [Xanthomonas campestris pv. raphani 756C]
Length = 472
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 259/473 (54%), Gaps = 18/473 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEGQ+ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHDPIPLYIDAPHEEGQWAPGAASRAWRHRSLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ G+ L++ + +S L I+ +A V +N Y+P + RD IK L E G+
Sbjct: 64 SLRARGSALLIRQGDSA-QVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLRERGLE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW + ++G + F +W L P ++ P L ++DG
Sbjct: 123 VQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLPASLDGVH 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L W PG + A ++L FV+ L Y +NR + TS LS
Sbjct: 183 VDALNLVPAPAWDRG--FWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L A+ G E + ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRI------ASTLEAQRTARNGAE-IDGYIRQLGWRDFAYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D AW++GRTG P+VDAG+R+LW TGW+HNR+R+IV+S
Sbjct: 294 TQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASLLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 354 KHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRE 475
Y+ +W+PELA + + PW P ++ + L YP+ PII L GR+
Sbjct: 414 TYITRWIPELAALRVKERFAPWLHPLSLAR-----LAPTYPRAPIIGLAEGRD 461
>gi|194365340|ref|YP_002027950.1| deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
R551-3]
gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
R551-3]
Length = 471
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 258/482 (53%), Gaps = 38/482 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P EEG++ PG S W +SL+ L
Sbjct: 4 ALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+S G+ LVL ++ +LA L I A V +N Y+P + RD +IK L E GI
Sbjct: 64 YLRSRGSSLVL-RSGDSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRTLREQGID 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L PA L A + S
Sbjct: 123 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPA-------LQAAPKALTAHS 175
Query: 185 IEDLGLEDESEKSS---NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ LGLE+ + + W PG + A + L+ F + L Y + R TS
Sbjct: 176 VDSLGLEELRLAPTLDWDIGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES------VTFFLRAMGLREYSRY 295
+SP+LHFGE++ ++ L EG S + +LR +G R+++ +
Sbjct: 236 RMSPHLHFGEIAPWRIAHAL-------------EGLRSAGTDADIDGYLRQLGWRDFAYH 282
Query: 296 LCFNFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
L +FP T L FPW W++G TG P+VDAG+RELW TG++HNR+
Sbjct: 283 LLHHFPKTPTENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRV 342
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+S+ K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P
Sbjct: 343 RMIVASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVT 402
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLG 473
Q KFDP+ Y+ +W+PELA +P + PW P +L AA YP+ P++DL +G
Sbjct: 403 QAEKFDPQARYISRWVPELAALPVKARFAPWQHP--LLLAAHAP---GYPRTPLVDLAVG 457
Query: 474 RE 475
R+
Sbjct: 458 RD 459
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 174/482 (36%), Positives = 265/482 (54%), Gaps = 25/482 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DNPAL AA G V PVY P G WWL SL+ L
Sbjct: 9 AILWFRKDLRLDDNPALHAAIEAGGPVIPVYIREPAHLNIGPLGAAQAWWLHHSLAALKA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SLKSL +L+ F + L + + A V N Y+ + D I +L + I+
Sbjct: 69 SLKSLSGDLI-FISGKAEDVLTDLVRKTNAKTVFVNRAYE--RTLFDRGIAIELKKHDIA 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP------ASILPPWRLVQAAG 178
+++++G LL+EP I G+AF F +W+ LQ EP + +P +
Sbjct: 126 IRAFHGQLLHEPKSIRTGAGNAFKVFTPFWN-ALQKVGEPQEPTDAPTKIPSPEHFPLSE 184
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+D ++ L + + +++ GR W+PG + A + L + V++ L Y + R +
Sbjct: 185 NLDHWAL----LPKKPDWAAD--FGRMWTPGEAGAQEKLADVVDRDLQDYKRGRDLPSVH 238
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TSLLSP+L GE+S +++ + + + E V F R + R++ L
Sbjct: 239 ATSLLSPHLAHGEVSPARIWHAV--------RGLPPKASEDVAHFRRELAWRDFCYNLLA 290
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
FP H+R F W D F AW G TGYP+VDAGMR+LW TG++HNR+R+I
Sbjct: 291 EFPKLHDRNWDDRFDGFKWEYDAKEFSAWTMGLTGYPIVDAGMRQLWRTGFMHNRVRMIT 350
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K L++ WR G ++F DTL+DAD + WQ+++GS D R+ +P +QG K
Sbjct: 351 ASFLIKDLMIDWRRGERWFRDTLVDADPANNSANWQWVAGSGADASPFFRIFNPVLQGEK 410
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP+G+YVR+ +PELAR+ +++H P++AP +VL+ AG+ELG YPKPI+D R+R
Sbjct: 411 FDPDGDYVREHVPELARLDRKYVHKPFEAPEHVLEKAGIELGKTYPKPIVDHAFARDRAL 470
Query: 479 QA 480
A
Sbjct: 471 AA 472
>gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
Length = 483
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 180/479 (37%), Positives = 254/479 (53%), Gaps = 10/479 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFR DLR+ D+PAL AAA+ G+ V VY + G RWWL QSL L
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALESE 70
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++LG L+L + T A L E A V +N + ++ + L GI+
Sbjct: 71 LRALGGALIL-RRGPTAAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVAGIAY 129
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ GD L EP I + G F +W + L + +P LP ++ A + +
Sbjct: 130 HRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLG-DPPQPLPRPTTLRPAPAVPTEQL 188
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D LE + + L + W+PG + A L F+ Y + R + TS LSP
Sbjct: 189 SDWQLEPTAPDWAGGLR-QTWTPGEAAAQTRLAAFLAMQP-GYAEGRDYPDRHITSGLSP 246
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L FGE+S R+V+ +A E + FL +G RE+ R+L F+ P
Sbjct: 247 HLRFGEISPRQVWYA-----ARFAAAERPAIAPDIDKFLSEVGWREFCRHLLFDHPDLAS 301
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
R L FPW +D AW++GRTGYP+VDAGMRELW +G +HNR+R++V SF VK
Sbjct: 302 RNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKH 361
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++FWDTL+DAD + WQ+++G D R+ +P +Q KFD G Y
Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAY 421
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
+R+W+PELAR+P + IH PW A P L AAG++LG NYP PI+D GR+R A ++
Sbjct: 422 IRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSAYAEL 480
>gi|384218167|ref|YP_005609333.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
gi|354957066|dbj|BAL09745.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
Length = 447
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 237/438 (54%), Gaps = 8/438 (1%)
Query: 47 PGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPV 106
PG +RWWL QSL LG + G L+L K + + E A V +N +
Sbjct: 15 PGGATRWWLAQSLRALGAETATRGGSLILRKGPAA-KVIPEVARESGAAMVYWNGVAQAP 73
Query: 107 SLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS 166
+ ++ L +LG+ QS+ GDLL P I ++ G F +W + + + +P
Sbjct: 74 HQSVEKQLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPFWRRVVSLG-DPPK 132
Query: 167 ILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
LP R ++ A + G ++E LE + L + W+PG ++A L +F+
Sbjct: 133 PLPAPRELRPAPPLAGDALESWTLEPTKPDWAGGLR-QTWTPGEASARMRLRDFLRHTAR 191
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
Y +R + TS LSP+L FGELS R+V+ +A EN V FL
Sbjct: 192 VYVGDRDRPDREGTSSLSPHLRFGELSPRQVWHA-----ARFAAAENPAIGPGVEKFLSE 246
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+G RE+ R+L + P L +N FPW D AW++GRTGYP+VDAG+RELW
Sbjct: 247 LGWREFCRHLLHDHPSLATENLQTNFDGFPWKGDKKALAAWQRGRTGYPIVDAGLRELWH 306
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TG +HNR+R++V+SF VK LL+ WR G +FWDTL+DAD + WQ+++G D
Sbjct: 307 TGVMHNRVRMVVASFLVKHLLIDWRDGESWFWDTLVDADAGSNPANWQWVAGCGADAAPY 366
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
R+ +P +QG KFDP+G YVR+W+PEL +P + IH PW A P L +AGV LG YP+P
Sbjct: 367 FRVFNPTLQGEKFDPDGAYVRRWVPELKDVPAKLIHQPWQASPIELASAGVTLGKTYPQP 426
Query: 467 IIDLDLGRERLTQAIFKM 484
I+D GRER A K+
Sbjct: 427 IVDHAKGRERALAAYAKI 444
>gi|346724379|ref|YP_004851048.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346649126|gb|AEO41750.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 475
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 259/484 (53%), Gaps = 21/484 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ ++ + L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 64 ALRALGSGLVI-RSGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
VQS N LL+EPW++ ++G + F +W L PA++ P RL ++ +
Sbjct: 123 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLPASLKTDA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN---STS 241
++ L L + W PG + A ++L F++ L Y +NR + TS
Sbjct: 183 LDTLQLVPGLQWDQG--FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRPDRVGTS 240
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+LHFGE++ ++ L + ++R +G R+++ +L +FP
Sbjct: 241 QLSPHLHFGEIAPWRIASTL-------ETHRTARNGAEIDAYIRQLGWRDFAYHLLHHFP 293
Query: 302 FTHERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
T + L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+S
Sbjct: 294 DTTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVAS 353
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFD
Sbjct: 354 FLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFD 413
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQ 479
P Y+ +W+PEL ++ + PW P A YP+ PII L GR+
Sbjct: 414 PHATYITRWVPELGKLAVKERFAPWLHP-----LALARFAPEYPRNPIIGLAEGRDAALA 468
Query: 480 AIFK 483
A K
Sbjct: 469 AYAK 472
>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
Length = 471
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 256/478 (53%), Gaps = 20/478 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++W R DLR+ DNPALAAA +G+V PV+ P E G SRWWL SL+ L
Sbjct: 4 TLLWLRNDLRLADNPALAAAIEEGNVLPVFVLDPAAE----TGGASRWWLHHSLAALEAD 59
Query: 66 LKSLGAELVLFKTESTLAALLECIS-AIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+ G LVL + ++ AA++ ++ I A V ++P D + L E GI
Sbjct: 60 FAARGGRLVLRRGDA--AAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAALQEAGIG 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ L++ P I G + + + C I P RL AAG G
Sbjct: 118 FHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLA-AAGDPGGDR 176
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D GL + L W+PG + A L F+ Y + R G TS LS
Sbjct: 177 LGDWGLLPVKPDWAGGLRA-SWTPGEAGARARLDAFLADGFGEYDRQRDLPGVAGTSGLS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV-TFFLRAMGLREYSRYLCFNFPFT 303
P+LH+GE+++ V W G+++ FL+ + RE++ YL ++ P
Sbjct: 236 PHLHWGEIAIDAV----------WRAAVAAPGRDAARQTFLKELIWREFAAYLLWHTPDL 285
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
RP+ + PW + AW+ GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF V
Sbjct: 286 ATRPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFLV 345
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLLPW+ G ++F D L+DAD + WQ+++GS D R+ +P +QG KFDP+G
Sbjct: 346 KHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPDG 405
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR+++PE+A +P +++H PW+AP VL+ AGV LG +YP+PI+DL GRER A
Sbjct: 406 AYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRERALAAF 463
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 264/478 (55%), Gaps = 10/478 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
N ++WFR+DLR++DN AL +AA + PVY P + G WWL SL+ L
Sbjct: 9 NPILLWFRKDLRLDDNHALQSAATSSRPLIPVYIREPGVTERGPLGGAQEWWLHYSLAAL 68
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+L ++G++L+L E+ L L + + A VV+N YDP + D IK+ L G
Sbjct: 69 QIALDAVGSKLILRHGEA-LTVLEKLVKETGAEAVVWNRRYDPAGVEVDTQIKKALRSKG 127
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I S+ G LL+EP + G+ + T+ +W Q P I P RL+
Sbjct: 128 IEANSFAGQLLHEPTRLRTGTGNHYKTYTPFWRAFEQSGEPPFPIEAPRRLLAPGRWPQS 187
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
S++ L ++ + + W+PG + A L +FV+ L Y R +TSL
Sbjct: 188 DSLDAWSLL-PAKPNWASEFADIWTPGEAAALDKLKDFVDGALNDYAIGRDFPDKPATSL 246
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+L GE+S +++ + G ++V F + + RE+ + F+FP
Sbjct: 247 LSPHLALGEISPARMWHAT-------RGLPDKVGTDNVVRFRKEIIWREFCYHQLFHFPK 299
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
FPW +D K+W++G+TGYP+VDAGMR+LW GW+HNR+R+I +SF
Sbjct: 300 LRTANWNDRYDDFPWLSDAKRLKSWQRGQTGYPIVDAGMRQLWRHGWMHNRVRMIAASFL 359
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K LL+ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG KFDP+
Sbjct: 360 IKDLLIDWREGEAWFRDTLVDADPAANTANWQWVAGSGADASPFFRIFNPVLQGEKFDPD 419
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G YVR ++PEL+++ +++IH P++AP +VLK AG+ELG +YP+PI+D + R+R A
Sbjct: 420 GGYVRTFVPELSKLDSKYIHRPFEAPDDVLKRAGIELGRHYPRPIVDHAMARQRALAA 477
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 177/481 (36%), Positives = 266/481 (55%), Gaps = 23/481 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DN AL AA G V PVY +E+ G WWL SL+ L
Sbjct: 8 AIVWFRKDLRLSDNLALLAAVEHGGPVIPVYV---REKSCGPLGGAQEWWLHHSLACLSA 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G+ LVL ++ L + IS A V +N YDP + D ++K+KL + G++
Sbjct: 65 ALEKTGSRLVLASGDAG-ETLRQLISETGADAVFWNRRYDPAGMATDKALKQKLRDDGLT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGC 183
V+S++G LL+EP + + G + + +W + L+ EP A P L ++
Sbjct: 124 VRSFSGHLLHEPSRLQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPKSLKAPKAWLESE 182
Query: 184 SIEDLGL----EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ D L D ++ S+ W+PG A + L +F++ L Y + R ++
Sbjct: 183 KLSDWKLLPTKPDWAKHFSDI-----WAPGEGGAQEKLDDFIDGALKGYEEGRDFPAKDA 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS+LSP+L GE+S V+ K + ++ F + + RE+ +L F+
Sbjct: 238 TSMLSPHLALGEISPATVWHA--TKGL-----SRHIASNDISRFRKEIVWREFCYHLLFH 290
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP E+ + F W D +FKAW +G TGYP+VDAGMR+LW G +HNR+R+IV+
Sbjct: 291 FPGLDEKNWNESFDAFGWRDDETSFKAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVA 350
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF +K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P +QG KF
Sbjct: 351 SFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKF 410
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G YVR+++PEL ++ ++IH P++AP VLK AG+ELG YP PI+D RER
Sbjct: 411 DADGNYVRRFVPELEKLDRKYIHKPFEAPKEVLKKAGIELGKTYPLPIVDHGKARERALA 470
Query: 480 A 480
A
Sbjct: 471 A 471
>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
JF-5]
Length = 471
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 176/478 (36%), Positives = 257/478 (53%), Gaps = 20/478 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++W R DLR+ DNPALAAA +G+V PV+ P E G SRWWL SL+ L
Sbjct: 4 TLLWLRNDLRLADNPALAAAIEEGNVLPVFVLDPAAE----TGGASRWWLHHSLAALEAD 59
Query: 66 LKSLGAELVLFKTESTLAALLECIS-AIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+ G LVL + ++ AA++ ++ I A V ++P D + L E GI
Sbjct: 60 FTARGGRLVLRRGDA--AAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAALQEAGIG 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ L++ P I G + + + C I P RL AAG G
Sbjct: 118 FHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLA-AAGDPGGDR 176
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D GL + L W+PG + A L F+ Y + R G TS LS
Sbjct: 177 LGDWGLLPVKPDWAGGLRA-SWTPGEAGARARLDAFLADGFGEYDRQRDLPGIAGTSGLS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV-TFFLRAMGLREYSRYLCFNFPFT 303
P+LH+GE+++ V W G+++ FL+ + RE++ YL ++ P
Sbjct: 236 PHLHWGEIAIDAV----------WRAAVAAPGRDAARQTFLKELIWREFAAYLLWHTPDL 285
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
RP+ + PW + AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF V
Sbjct: 286 ATRPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFLV 345
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLLPW+ G ++F D L+DAD + WQ+++GS D R+ +P +QG KFDP+G
Sbjct: 346 KHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPDG 405
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR+++PE+A +P +++H PW+AP VL+ AGV LG +YP+P++DL GRER A
Sbjct: 406 AYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRERALAAF 463
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 181/487 (37%), Positives = 266/487 (54%), Gaps = 35/487 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DN AL AA G V PVY +E+ G WWL SL+ L
Sbjct: 8 VIVWFRKDLRLSDNLALLAAVEHGGPVIPVYI---REKSAGPLGGAQEWWLHHSLAALSS 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ G LVL ++ L + IS A VV+N YDP + D ++K+KL + G++
Sbjct: 65 SLEKAGGRLVLASGDAE-RILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDDGLT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S++G LL+EP + + G + + +W + L+ EP + P + + A
Sbjct: 124 VRSFSGQLLHEPSRLQTKSGGPYRVYTPFW-RALEGSDEPHAPADPPKSLTAPK------ 176
Query: 185 IEDLGLEDESEKSSNALL-----------GRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
+ +SEK SN L W+PG + A L +F++ L Y + R
Sbjct: 177 -----VWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRD 231
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+TSLLSP+L GE+S V+ K + ++ F + + RE+
Sbjct: 232 FPAKPATSLLSPHLAAGEISPAAVWHA--TKGL-----SRHIASNDISRFRKEIVWREFC 284
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L F+FP E+ + F W D +FKAW +G TGYP+VDAGMR+LW G +HNR
Sbjct: 285 YHLLFHFPELGEKNWNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNR 344
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF +K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P
Sbjct: 345 VRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPI 404
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
+QG KFD +G+YVR+++PEL ++ ++IH P++AP + LK AGVELG YP PI+D
Sbjct: 405 LQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKA 464
Query: 474 RERLTQA 480
RER A
Sbjct: 465 RERALAA 471
>gi|338732806|ref|YP_004671279.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
gi|336482189|emb|CCB88788.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
Length = 462
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 175/486 (36%), Positives = 267/486 (54%), Gaps = 33/486 (6%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+T+ WF++DLR+ DN L AA+ GSV P+Y P F G SR WL SL L Q
Sbjct: 2 KTLFWFKQDLRLSDNQGLYEAAKIGSVLPIYILDP---NHFSLGAASRVWLHHSLKSLSQ 58
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL +L +F+ + L + + + + V +N Y+P + ++ IK +L + +
Sbjct: 59 SL---DGKLAVFQG-APLEVIRQLVKKYQIQAVYWNRGYEPWQISQEKEIKIQL-DKEVK 113
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGC 183
VQ ++ LL+EPW+I + F Y+ + CL PP + + +D
Sbjct: 114 VQEWSSFLLWEPWKILKADETPYKVFSPYYKRGCLFAD-------PPRDPLGSPSKLDLI 166
Query: 184 SIEDLGLE-----DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
++ GL+ + N L + W+ G +A K F+ + LL Y R N
Sbjct: 167 PVKHHGLDYLDLLPKVRWDENVL--QHWNIGEKSAWKKFQTFLAEGLLYYKTGRDFPAQN 224
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+ S LSP+LHFGE+S ++ W+ + + + + FL +G RE+S YL +
Sbjct: 225 AVSRLSPHLHFGEISPHQI----------WSVVNSQKQDHNTSSFLSELGWREFSYYLLY 274
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP + S YFPW + + W G+TG+P+VDAGMRELW TG++HNR+R+IV
Sbjct: 275 HFPTLPTQNFQSKFDYFPWKWESPYLQHWCSGKTGFPIVDAGMRELWQTGYMHNRVRMIV 334
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ W+ G+ +F + LLDADL + WQ+++GS D R+ +P QG K
Sbjct: 335 ASFLVKNLLIHWQIGLNWFENHLLDADLASNSASWQWVAGSGADAAPYFRIFNPITQGEK 394
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP GEY R+++PEL ++P +++ PWDAP ++L+ AGV+LG YP+PIIDL RE
Sbjct: 395 FDPHGEYTRRYVPELKKLPDKYLFCPWDAPKSILEKAGVKLGRTYPEPIIDLKQSREEAL 454
Query: 479 QAIFKM 484
QA +M
Sbjct: 455 QAFDQM 460
>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
Length = 475
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 241/480 (50%), Gaps = 18/480 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFR+DLR+ DNPAL A R G V P+Y + G SR WL +SL L Q
Sbjct: 9 VIMWFRQDLRLHDNPALLTATRLGPVIPIYILDDEHAADQRMGAASRCWLHRSLDALNQQ 68
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L L LF+ + L + + V +N Y+P + RD IKEKL LGI+V
Sbjct: 69 LD---GHLQLFRGPAD-TLLEQLVQHYDCRTVTWNRCYEPWRINRDRIIKEKLQGLGITV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT-IDGCS 184
S NG LL+EPW++ + F ++ + + P + AA T
Sbjct: 125 HSDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSVPVRSPLPRPAEIALAAVTPYSALK 184
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ DL L + L W PG + A + F+E+ LL Y + R S LS
Sbjct: 185 LADLELRPNHPWADKVL--HHWQPGEAGAQQRWQTFMEEELLGYGEGRDLPAQPHVSRLS 242
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P +H+GE+SV + LW + G E F R + RE+S F+ P
Sbjct: 243 PAIHWGEISVHQ----------LWHDAQAI-GHEDALAFQRQLAWREFSVTQLFHHPDMD 291
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
L FPWH D W+QG TG P VDAGMRELW TG +HNR+R++V SF VK
Sbjct: 292 RINLDRRFNLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNRVRMVVGSFLVK 351
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L + W G +FWD LLDADL + WQ+I+G D R+ +P QG KFDP G+
Sbjct: 352 NLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPVTQGQKFDPHGD 411
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y R ++PELA++P ++ PW AP +L+ G+ LG YP+P++D+ + R++ A M
Sbjct: 412 YTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVSRQQALDAYAHM 471
>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 484
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 263/481 (54%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGVASRTWRHRSLAALDD 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++ G+ LV+ +S L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 76 ALRARGSGLVIRAGDSA-QVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 134
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS N LL+EPW++ ++G + F +W L PA++ P L + +
Sbjct: 135 AQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPRSLPPLPAALKTDA 194
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L S G PG + A ++L F++ L Y +NR + TS LS
Sbjct: 195 LDTLQLV-PSLNWDQGFWEHG-QPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 252
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L A+ G E + ++R +G R+++ +L +FP T
Sbjct: 253 PHLHFGEIAPWRI------ASTLEARRTARNGAE-IDGYIRQLGWRDFAYHLLHHFPDTT 305
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L + F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 306 NQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 365
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 366 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 425
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + A YP+ PII L GR+ A
Sbjct: 426 TYITRWVPELGKLAVKERFAPWLHPLSLARFAS-----EYPRAPIIGLAEGRDAALAAYA 480
Query: 483 K 483
K
Sbjct: 481 K 481
>gi|365901755|ref|ZP_09439584.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
gi|365417509|emb|CCE12126.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
Length = 480
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 258/475 (54%), Gaps = 9/475 (1%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I WFR LR+ D+PA+ AAA G+ V V+ + + G SRWWL QSL L S
Sbjct: 7 IAWFRESLRLSDHPAVHAAASAGAPVICVFVFDDRSPDVRPLGGASRWWLAQSLRSLQAS 66
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+++G ELVL + + L S A V +N + ++E L LGI
Sbjct: 67 LRAVGGELVL-RRGAPADVLRALASETNAAAVFWNDVAQAPQRAVAAEVEEALAALGIES 125
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ DLL +P + + G F +W + L M PA + P L AG I ++
Sbjct: 126 RSFPDDLLVDPAMLRAKDGRGLRVFTPFWKRVLAMGDPPAPLPAPRSLPPVAG-IASLAV 184
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
EDL LE + L R W PG + A + L F+ Q Y +R + ++TS L+P
Sbjct: 185 EDLQLEPTRPDWAGGLRAR-WQPGEAAAQQRLATFLGQTAKTYAADRDRPDLDATSHLAP 243
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L FGE+ R+V+ +A E+ + FL +G RE+SR L ++ P
Sbjct: 244 HLRFGEIGPRQVWHA-----ARFAASEHPAQAAGIDKFLSELGWREFSRQLLYDRPDLAT 298
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
L ++ FPW D +W++G TGYP+VDAGMR+LW +G +HNR+R++V+SF VK
Sbjct: 299 CNLQTSFDDFPWRDDAPALASWQRGETGYPIVDAGMRQLWHSGTMHNRVRMVVASFLVKH 358
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++FWDTL+DAD + GWQ+++G D R+ +P +QG KFDP+G Y
Sbjct: 359 LLIDWRAGEQWFWDTLVDADPANNPAGWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGAY 418
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
VR+W+P LA++P IH PW A P L +AG+ LG YP PI+D RER A
Sbjct: 419 VRRWVPGLAKLPAPLIHQPWRAAPLELASAGIALGRTYPAPIVDHKRARERALAA 473
>gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 484
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 257/481 (53%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR++DNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 16 AIVWFRRDLRLQDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALED 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ +S L I+ A V +N Y+P + RD IK L E GI
Sbjct: 76 ALRALGSGLVIRAGDSA-QVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 134
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS N LL+EPW++ ++G + F +W L PA+ P L + +
Sbjct: 135 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLPAMLKTDA 194
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L W G + A ++L F++ L Y KNR + TS LS
Sbjct: 195 LDTLQLVPSLNWDQG--FWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVGTSQLS 252
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + ++R +G R+++ +L +FP T
Sbjct: 253 PHLHFGEIAPWRIASAL-------EAQRTARNGAEIDGYIRQLGWRDFAYHLLHHFPDTT 305
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L + F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 306 NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 365
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP
Sbjct: 366 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPHA 425
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++P + PW P ++ + A YP+ PII L GR+ A
Sbjct: 426 TYITRWVPELGKLPVKERFAPWLHPLSLARFAP-----EYPRTPIIGLAEGRDAALAAYS 480
Query: 483 K 483
K
Sbjct: 481 K 481
>gi|357384343|ref|YP_004899067.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
gi|351592980|gb|AEQ51317.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
Length = 466
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 171/472 (36%), Positives = 254/472 (53%), Gaps = 18/472 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T+VW R DLRI DNPALAAA R +G V VY E + G ++ WL +SL+ L
Sbjct: 5 TLVWLRNDLRIADNPALAAALRHEGPVHAVYVLETDRELRGLGG-AAKVWLHESLAALSG 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L + ES + E + KA +V +N YDP D +IK L G
Sbjct: 64 ALAERGVRLSFREGESG-KIIPEMVRETKAERVYWNRRYDPAGRTHDAAIKTALRADGAE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+N LL EPW+I ++G + F +W + I P ++ I +
Sbjct: 123 VASFNASLLVEPWDIATKQGTPYGVFTPFW-----TALREKPIPDPIGRIEKHEAISAPA 177
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D G + + +L R W+ G A +VL++F++ L Y +R + TS +S
Sbjct: 178 L-DFG---KRPAWAGGILER-WAIGEDAAKRVLSDFLDDLLADYPNDRDLPRKDGTSRMS 232
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L FGE+ R+++ + + ++ +K E FL + RE+S +L ++
Sbjct: 233 PHLRFGEIGPRQIWFAV--RHLIDSKPSMASAGEK---FLSEVAWREFSYHLLYHRDDIA 287
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ W +D KAW++G+TG P+VDAGMR+LW TGW+HNR+R++ +S K
Sbjct: 288 RHSMQERFDEIEWRSDSKALKAWQKGQTGIPIVDAGMRQLWQTGWMHNRVRMLTASLLTK 347
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+ WR G +FWDTL+DAD + WQ+++GS D R+ +P QG KFDP G+
Sbjct: 348 NLLIDWRKGENWFWDTLVDADPANNPASWQWVAGSGADAAPYFRIFNPVTQGEKFDPHGD 407
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
YVRQW+PEL+ +P +W+H PW A P +L A ++ G YP PI+DL RER
Sbjct: 408 YVRQWVPELSDVPDKWVHKPWAADPEILNKASLKSGTAYPAPIVDLKASRER 459
>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 484
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 259/481 (53%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y EEG++ PG SR W +SL+ L
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDALHEEGEWTPGAASRTWRHRSLAALDD 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++ G+ LV+ +S L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 76 ALRARGSGLVIRAGDSA-QVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 134
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS N LL+EPW++ ++G + F +W L PA++ P L + +
Sbjct: 135 AQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLPAALKTDA 194
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L S + + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 195 LDTLQLV--SSLNWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 252
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++R +G R+++ YL +FP T
Sbjct: 253 PHLHFGEIAPWRIASTL-------EAHRTARNCAEIDGYIRQLGWRDFAYYLLHHFPDTT 305
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L + F W D AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 306 NQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 365
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 366 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 425
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + A YP+ P+I L GR+ A
Sbjct: 426 TYITRWVPELGKLAVKERFAPWLHPLSLARFAP-----EYPRTPVIGLAEGRDAALAAYA 480
Query: 483 K 483
K
Sbjct: 481 K 481
>gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
Length = 477
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 182/463 (39%), Positives = 255/463 (55%), Gaps = 14/463 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
I+WFRRDLR+ DN ALAAAA G+ V + E+ G +RWWL SL L L
Sbjct: 6 ILWFRRDLRLTDNLALAAAATTGAPL-VALFILDEDDDPPLGGAARWWLHHSLVSLTHDL 64
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ G L L + S A+L + A V ++ +Y+P +L RD I+ L G+ Q
Sbjct: 65 RERGLSLTLRRGPSA-ASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRASGVEAQ 123
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
S++G LL+EP EI +G AF F +W + Q + P + P ++AA +E
Sbjct: 124 SFSGALLFEPGEIRSAQGRAFRVFAPFW-RAAQAIVAPGAPKPAPTRLRAAPAPRSERLE 182
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
D GL + L W PG S A L FVE + Y R ++ S LSP+
Sbjct: 183 DWGLTPREPDWAGGLRD-AWRPGESGARARLDAFVEDGVRDYAAARDFPAKDNVSRLSPH 241
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHER 306
LH+GE+ R+V++ + E + + FLR +G RE+ ++ + P E
Sbjct: 242 LHWGEIGPRQVWRAI---------EGADAPRADIAAFLRELGWREFCHHILLDHPSLPEA 292
Query: 307 PLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
PL + FPW D G F+AW +G TGYP VDAGMR+LW TGW+HNR+R+IV+SF VK
Sbjct: 293 PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVASFLVKH 352
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LLL WR G ++F+DTL+DADL + WQ+ +G D R+ +P +QG K+D +G +
Sbjct: 353 LLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYDADGAF 412
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
VR+++PELAR+ +IH PW AP L+ AGV LG YP II
Sbjct: 413 VRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455
>gi|405377862|ref|ZP_11031797.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
gi|397325650|gb|EJJ29980.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
Length = 484
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 258/479 (53%), Gaps = 24/479 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR++DN AL AA G V P+Y P+E+G G WWL SL L
Sbjct: 10 VIVWFRKDLRLDDNRALYAACASGRPVIPLYIREPQEDGTGPLGAAQAWWLHHSLHALDA 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+LK G +L+L + AL + I A V +N YDP + D +K + + I
Sbjct: 70 ALKKHGGKLILASGHAR-HALADIIRRSGAEAVFWNRRYDPPGIAIDTRLKHEFEKQAIE 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRL---VQAAGTI 180
+S+ G LL+EP + G ++ + +W + L+ EP A + P R Q +
Sbjct: 129 ARSFGGQLLHEPTRLKTTSGTSYRVYTPFW-RALEEGGEPEAPVDVPERFRFPKQFPASE 187
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
S + L L+ KS + W+PG + A + L+ FVE L Y +R G +T
Sbjct: 188 VLASWKLLPLKPNWAKSFPDM----WTPGEAAAQEKLSAFVEDGLSGYSADRDFPGKTAT 243
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK---ESVTFFLRAMGLREYSRYLC 297
SLLSP+L GE+S ++ W E + + + F + + RE+S +L
Sbjct: 244 SLLSPHLALGEISPARI----------WDATEGLSRRIPSDDIVRFRKELAWREFSYHLL 293
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
F+FP + F W D F AW G+TGYP+VDAGMR+LW GW+HNR+R+I
Sbjct: 294 FHFPELARDNWNDSFDGFGWREDEDGFHAWCNGQTGYPIVDAGMRQLWRHGWMHNRVRMI 353
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF +K LL+ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG
Sbjct: 354 TASFLIKDLLVDWRRGEAWFRDTLVDADPASNAASWQWVAGSGADASPFFRIFNPMLQGE 413
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD +G Y+RQ++PEL ++ ++IH P++AP +VL+ AGV LG YP+PI+D R R
Sbjct: 414 KFDADGSYIRQFVPELGKLEDKYIHRPFEAPASVLENAGVTLGKTYPRPIVDHATARRR 472
>gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 472
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 257/481 (53%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR++DNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALED 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ +S L I+ A V +N Y+P + RD IK L E GI
Sbjct: 64 ALRALGSGLVIRAGDSA-QVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS N LL+EPW++ ++G + F +W L PA+ P L + +
Sbjct: 123 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLPAMLKTDA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L W G + A ++L F++ L Y KNR + TS LS
Sbjct: 183 LDTLQLVPSLNWDQG--FWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRIASAL-------EAQRTARNGAEIDGYIRQLGWRDFAYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L + F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 294 NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP
Sbjct: 354 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPHA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++P + PW P ++ + A YP+ PII L GR+ A
Sbjct: 414 TYITRWVPELGKLPVKERFAPWLHPLSLARFAP-----EYPRTPIIGLAEGRDAALAAYS 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|424881257|ref|ZP_18304889.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517620|gb|EIW42352.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 483
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 256/479 (53%), Gaps = 16/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DN AL AA R G + P+Y P+ G G WWL SL L +
Sbjct: 9 VILWFRKDLRLDDNRALDAAHRSGRPIIPLYISEPEASGTGPLGAAQAWWLHHSLEALDR 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ A LVL E+ L L I A V +N YDP + D IK +L + I
Sbjct: 69 SLRERQARLVLASGEA-LEVLCTFIRESGAEAVFWNRRYDPSGISIDAHIKHELEKQAIE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASIL-PPWRLVQAAGTIDGC 183
+S+ G LL+EP + G + + +W + L+ EP L P +L A+
Sbjct: 128 ARSFGGQLLHEPSRLMTGNGTPYRVYTPFW-RALEGGGEPEQPLEAPAKLRIASQLPKSE 186
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++E L ++ W+PG A + L F+E L Y +NR +TSLL
Sbjct: 187 ALESWKLL-PTKPDWAVHFTDLWTPGEDGAHEKLRAFIEDALDGYKENRDYPARPATSLL 245
Query: 244 SPYLHFGELSVRKVFQCL--WMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
SP+L FGE+S +++ K++ A V F + + RE+S +L F+FP
Sbjct: 246 SPHLAFGEISPARIWDATRGLSKRVAAA---------DVVHFRKEIAWREFSYHLLFHFP 296
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
F W D +FK W +G TGYP+VDAGMR+LW GW+HNR+R+IV+SF
Sbjct: 297 RLASNNWNDRFDGFEWRNDDDDFKVWCRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASF 356
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG KFDP
Sbjct: 357 LIKDLMIDWRRGEAWFRDTLVDADTANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDP 416
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+G+YVR ++PEL + ++IH P++AP ++L AG+ LG YPKPI+D R R A
Sbjct: 417 DGDYVRTYVPELRELGVKYIHRPFEAPKSMLDEAGITLGQTYPKPIVDHASARNRALAA 475
>gi|456734211|gb|EMF59033.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
EPM1]
Length = 471
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/468 (37%), Positives = 253/468 (54%), Gaps = 20/468 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P EEG++ PG S W +SL+ L
Sbjct: 4 ALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL ++ +L AL I+ A V +N Y+P + RD +IK L E GI
Sbjct: 64 DLRTRGSSLVL-RSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLREQGID 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L PA P L A +D +
Sbjct: 123 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEAL--APHAVDSLA 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++DL L + + W PG + A + L+ F + L Y + R TS LS
Sbjct: 181 LDDLQLAPTLDWDTG--FWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRLS 238
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + +LR +G R+++ +L +FP T
Sbjct: 239 PHLHFGEIAPWRIAHAL-------EGLRSAGADADIDGYLRQLGWRDFAYHLLHHFPKTP 291
Query: 305 ERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
L FPW AW++G TG P+VDAG+RELW TG++HNR+R+IV+S+
Sbjct: 292 TDNLNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLC 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 352 KHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNY-PKPIIDL 470
Y+ +W+PELA +P + PW P +L AA Y P P++DL
Sbjct: 412 RYISRWVPELAALPVKARFAPWQHP--LLLAAHAP---GYPPTPVVDL 454
>gi|384419903|ref|YP_005629263.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462816|gb|AEQ97095.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 472
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 173/481 (35%), Positives = 258/481 (53%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR++DNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGGASRTWRHRSLAALED 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ +S L + I+ A V +N Y+P + RD IK L E GI
Sbjct: 64 ALRALGSGLVIRAGDSA-QVLDDVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS N LL+EPW++ ++G + F +W L PA+ P L + +
Sbjct: 123 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPGSLPPLPAMLKTDA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L W G + A ++L F++ L Y +NR + TS LS
Sbjct: 183 LDTLQLVPSLNWDQG--FWEHWHAGEAGAHEMLEIFIDGGLSGYRENRDRPDRVGTSQLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + ++R +G R+++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRIASAL-------EAQRTARNGAEIDGYIRQLGWRDFAYHLLHHFPDTT 293
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L + F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 294 NQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGWMHNRVRMIVASFLC 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP
Sbjct: 354 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPHA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++P + PW P ++ + A YP+ PII L GR+ A
Sbjct: 414 TYITRWVPELGKLPVKERFAPWLHPLSLARFAP-----EYPRTPIIGLAEGRDAALAAYS 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 247/476 (51%), Gaps = 10/476 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFRRDLR++DN AL AA G + PVY P G G WWL SL L +
Sbjct: 9 VILWFRRDLRLDDNQALNAAHLSGRPIIPVYINEPAAAGTGPLGAAQAWWLHHSLEALDR 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL ELVL ++ L L I A V +N YDP + D IK++L + I
Sbjct: 69 SLHERQGELVLASGDA-LEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQAIE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+S+ G LL+EP + G + + +W + P +L A+ +
Sbjct: 128 ARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLASQRPASET 187
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L + W+PG A + L+ FVE L Y +NR +TS+LS
Sbjct: 188 LKSWKLLPTKPDWAKGFADL-WTPGEQGARERLSAFVEDELKGYKENRDYPAKPATSMLS 246
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L GE+S +++ N + F + + RE+S +L F+FP
Sbjct: 247 PHLALGEISPARIWDAT-------RGLSNRVPAADIVHFRKEIAWREFSYHLLFHFPRLA 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
F W D G+F+AWR+G TGYP+VDAGMR+LW GW+HNR+R+IV+SF +K
Sbjct: 300 SENWNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG FDP+G+
Sbjct: 360 DLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGETFDPDGD 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
YVR +PEL R+ ++IH P++AP + L AG+ LG YPKPI+D R+R A
Sbjct: 420 YVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHASARDRALAA 475
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/493 (35%), Positives = 256/493 (51%), Gaps = 45/493 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DN AL AA R G + P+Y P G G WWL SL L +
Sbjct: 9 VILWFRKDLRLDDNQALTAAHRSGRPIIPLYIREPAAAGTGPLGAAQAWWLHHSLEALNR 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ L LVL E+ L L I A V +N YDP + D IK +L + I
Sbjct: 69 SLQKLNGRLVLASGEA-LEVLCAFIKESAAEAVFWNRRYDPAGISIDARIKHELEKQAIE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---------------LQMQMEPAS-IL 168
+S+ G LL+EP + G + + +W L++ +P S +L
Sbjct: 128 ARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKLRLASQPKSEVL 187
Query: 169 PPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRY 228
W+L+ G + DL W+PG A + L FVE L Y
Sbjct: 188 GSWKLLPTKPDWAGDFV-DL-----------------WTPGEEGAQQRLHVFVEDALEGY 229
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCL-WMKQILWAKEENFEGKESVTFFLRAM 287
+NR +TS+LSP+L GE+S +++ + Q + A + + F +
Sbjct: 230 KENRDYPARPATSMLSPHLALGEISPARIWDATRGLSQRVPAAD--------IVHFREEI 281
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE+S +L F+FP F W + G+F+AWR+G TGYP+VDAGMR+LW
Sbjct: 282 AWREFSYHLLFHFPRLASANWNDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRH 341
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R+IV+SF +K L++ WR G +F DTL+DAD + WQ+++GS D
Sbjct: 342 GWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFF 401
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P +QG KFDP+G+YVR ++PEL + ++IH P++AP ++L AG+ LG YPKPI
Sbjct: 402 RIFNPVLQGEKFDPDGDYVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPI 461
Query: 468 IDLDLGRERLTQA 480
+D R R A
Sbjct: 462 VDHASARNRALAA 474
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 255/480 (53%), Gaps = 18/480 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFR+DLR++DN ALA AA +G V PVY P E G G WWL SL+ L +S
Sbjct: 8 ILWFRKDLRLDDNAALATAADEGRRVIPVYIREPAEAGTGPLGAAQAWWLHHSLAALARS 67
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ +G+ L L ++ L + I A V +N YDP + D +IK +L E G+ +
Sbjct: 68 LEEIGSRLTL-RSGPAGQVLDQLIDETGAASVYWNRRYDPPGIAIDKAIKARLTEDGLVI 126
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCS 184
+++ G +L+EP + G F + +W K L+ EP P P L D
Sbjct: 127 RTFAGQILHEPTRLTTGSGTNFRVYTPFW-KALESSGEPREPAPAPASLNAPPSWPDSEP 185
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L ++ + A W PG + A + L F+E L Y R +TS+LS
Sbjct: 186 LDSWALL-PTKPNWAAEFSEIWQPGEAGALERLDTFIENGLAGYRSLRDFPARPNTSMLS 244
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGK---ESVTFFLRAMGLREYSRYLCFNFP 301
P+L GE+S ++ W G+ E + F + + R++S +L F+FP
Sbjct: 245 PHLAMGEISPARI----------WHATRGLAGRFASEDIIHFRKEVVWRDFSYHLLFHFP 294
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ S FPW + K W++G TGYP+VDAGMR+LW G++HNR+R+I +SF
Sbjct: 295 DLKSKNWNSKFDAFPWRSAPDLLKKWQRGETGYPIVDAGMRQLWRHGYMHNRVRMIAASF 354
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K L++ WR G ++F DTL+DAD + WQ+++GS D R+ +P QG KFD
Sbjct: 355 LIKDLMIDWREGERWFRDTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQGEKFDV 414
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EG Y+R ++PEL MP +IH P++AP VLK AGV L Y KPI+D R+ A+
Sbjct: 415 EGHYIRTFVPELKAMPDAYIHRPFEAPLTVLKEAGVILDETYAKPIVDHKQARDEALAAL 474
>gi|386718155|ref|YP_006184481.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
D457]
gi|384077717|emb|CCH12306.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
D457]
Length = 471
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/468 (36%), Positives = 253/468 (54%), Gaps = 20/468 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P E+G++ PG S W +SL L
Sbjct: 4 ALVWFRRDLRLQDNPALQAALDAGHDVVPVYLHAPHEDGEWLPGAASDAWRHRSLGALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL ++ +L AL I A V +N Y+P + RD +IK L E GI
Sbjct: 64 DLRTRGSSLVL-RSGDSLPALQLLIGQTGAEAVYWNRKYEPATQARDATIKRTLREQGID 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L P P L A ++DG +
Sbjct: 123 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPTLSAAPKALT--AHSVDGLA 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+++L L + S W PG + A + L+ F + L Y + R TS LS
Sbjct: 181 LDELRLAPTLDWDSG--FWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRLS 238
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + + +LR +G R+++ +L +FP T
Sbjct: 239 PHLHFGEIAPWRIAHAL-------ERLRSAGTDADIDGYLRQLGWRDFAYHLLHHFPKTP 291
Query: 305 ERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
L FPW W++G TG P+VDAG+RELW TG++HNR+R+IV+S+
Sbjct: 292 TDNLNPRFDRFPWATPTAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLC 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 352 KHLRAHWLQGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDL 470
Y+ +W+PELA +P + PW P +L AA YP+ P++DL
Sbjct: 412 RYISRWVPELAALPVKARFAPWQHP--LLLAAHAP---GYPRTPLVDL 454
>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
Length = 480
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/488 (34%), Positives = 264/488 (54%), Gaps = 17/488 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFR+DLR++DNPAL AAA G V V+ + EG G RWWL SL L +
Sbjct: 8 IMWFRQDLRLDDNPALIAAAESGKPVVAVFVFDEASEGIRKLGGAMRWWLHHSLKSLTKD 67
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L +LG +L+L + + + + A VV+N Y D +IK +
Sbjct: 68 LGALGVDLILRRGPGA-EVIFDLAKEVGAENVVWNRRYGDAEQTVDATIKG---DFEGEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+SY G +++EP + G+ + + +W K +M + + P + G + ++
Sbjct: 124 KSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQEIAGFGGDVASDNL 183
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
++ L S+ L + W+PG S A F+ L Y R G + TS LSP
Sbjct: 184 DEWDLLPTKPDWSDGWL-KVWTPGESAAQTRARAFMSDDLDVYDSARDLPGDDRTSRLSP 242
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFE-GKESVTFFLRAMGLREYSRYLCFNFPFTH 304
+L +GE+S +++Q A++ G ++ +++ + RE+S +L +P
Sbjct: 243 HLRWGEISPYRLWQM--------AQDGRLSAGSKARETWVKELVWREFSYHLLQEWPDLA 294
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ FPW +D +AW++G+TGYP+VDAGMR+LW TGW+HNR+R+IV SF VK
Sbjct: 295 NENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIVGSFLVK 354
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LLL WR G +FWDTL+D D + WQ+++G+ D R+ +P +Q KFD +G
Sbjct: 355 HLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEKFDKDGV 414
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y+++W+PELA++P +++ PW+AP VL+ AGV+LG YP+PI+D RER A+ +M
Sbjct: 415 YIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARERALAALQEM 474
Query: 485 WEMEAADN 492
EA D
Sbjct: 475 --REAVDG 480
>gi|347760850|ref|YP_004868411.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
gi|347579820|dbj|BAK84041.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
Length = 466
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/486 (35%), Positives = 247/486 (50%), Gaps = 44/486 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++WFR DLR+ DNPAL AA G V +Y P F G RWWL +L+ L
Sbjct: 7 TVMWFRDDLRLADNPALTDAATQGPVICLYVHDPA----FALGAAERWWLHDALTALDHD 62
Query: 66 LKSLGAELVLFKTESTLAALLECISA-IKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G +L + E + A+++ ++ AT VV+N Y + D IK L +GI
Sbjct: 63 LRARGGQLCIM--EGSAQAVVQWLAQQAGATAVVWNRRYGGPARQVDTDIKTALKVMGID 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+S+ G++L+EPW++ +G F + +W M+ + LPP V ++ S
Sbjct: 121 ARSHPGNMLHEPWQVRTRQGTPFRVYTPWWRAVQAME----APLPP---VSVPASLTFAS 173
Query: 185 IEDLGLEDESEKSSNALL------GRG----WSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ E + S+ LL +G W PG L FV + + Y + R
Sbjct: 174 LPPAVGEQQLAPSALRLLPTRPDWAQGLRDTWQPGEQAGQARLDSFVAKRMAGYARQRDL 233
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+TS LSPYL FG +S R+V+ + E E FL +G R+++
Sbjct: 234 PARPATSALSPYLRFGHVSSRQVWHAV---------AAGKEMDEDGACFLSEVGWRDFAH 284
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
F FP R L PW D +AW+QGRTGYP+VDAGMRELW TGW+HNR+
Sbjct: 285 ATLFEFPEMATRSLRPEYDRMPWRTDPAALQAWQQGRTGYPIVDAGMRELWHTGWMHNRV 344
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K LLL WR G ++F DTL+DAD + WQ+++G D R+ +P +
Sbjct: 345 RMIVASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVL 404
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG KFDP G+YVR+W+PE+A + +H PW P YP PI+DL GR
Sbjct: 405 QGEKFDPAGDYVRRWVPEIAHLTGRDLHTPWKMAPR-----------GYPAPIVDLTAGR 453
Query: 475 ERLTQA 480
R A
Sbjct: 454 TRALAA 459
>gi|192291959|ref|YP_001992564.1| deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
Length = 483
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 254/479 (53%), Gaps = 10/479 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFR DLR+ D+PAL AAA+ G+ V VY + G RWWL QSL L
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALESD 70
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++LG L+L + + A L E A V +N + ++ + L GI+
Sbjct: 71 LRALGGALILRRGPAA-AVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVAGIAY 129
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ GD L EP I + G F +W + L + +P LP ++ A +
Sbjct: 130 HRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLG-DPPQPLPRPTTLRPAPAPPSDQL 188
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D LE + + L + W+PG + A L++F+ L Y R + TS LSP
Sbjct: 189 GDWQLEPTAPDWAGGLR-QTWTPGEAAAQARLSDFLAG-LPGYADGRDYPDRHITSGLSP 246
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L FGE+S R+V+ +A E + FL +G RE+ R+L F+ P
Sbjct: 247 HLRFGEISPRQVWYA-----ARFAAAERPAIAPDIDKFLSELGWREFCRHLLFDHPDLAT 301
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
R L FPW +D AW++GRTGYP+VDAGMRELW +G +HNR+R++V SF VK
Sbjct: 302 RNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKH 361
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++FWDTL+DAD + WQ+++G D R+ +P +Q KFD G Y
Sbjct: 362 LLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAY 421
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
+++W+PELA +P + IH PW A P L AAG+ELG NYP PI+D GR+R A ++
Sbjct: 422 IQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKTGRQRALSAYAEL 480
>gi|386818429|ref|ZP_10105647.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
gi|386423005|gb|EIJ36840.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
Length = 476
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 257/476 (53%), Gaps = 26/476 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVW R+DLR+ DNPAL A + +V ++ P G S+ WL SL L
Sbjct: 4 AIVWLRQDLRLADNPALYHACKTCANVILIFIDDPLPGSVSRLGAASQVWLHHSLQALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ G L L + S L L ++ AT V +N +YDP SL RD IKE L + +
Sbjct: 64 SLQAAGNRLTL-RQGSALPVLQALLAETGATHVYWNRVYDPASLARDKQIKEILKQ-SCT 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+N LL EPWE+ G + F +W L+ ++ + P ++ +
Sbjct: 122 VHSFNASLLNEPWEVLKADGTPYKVFTPFWKAMLKHGIQHLPLPAPEQIPAPTSFPRSLA 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ +LGL + + + W G + A + L +F+ Y R + T+ LS
Sbjct: 182 LNELGLLPRTHWDTGMM--AHWPAGETAAMQKLLDFLPLGGADYKNARNFPAQHGTAQLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R Q ++ + A E+ + + F++ +G RE++ YL ++FP T
Sbjct: 240 PHLHFGEISPR---QAVYHTEAFLA--EHPAAESGLRHFIQEIGWREFAWYLLYHFPHTV 294
Query: 305 ERPLLSNLKYFPWHAD-LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
++ L K+FPW D + N + WR+G+TGYP++DAGMRELW TGW+HNR+R+IV+S
Sbjct: 295 DQALDERFKHFPWAEDYVENLEHWRRGQTGYPIIDAGMRELWQTGWMHNRVRMIVASLLT 354
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+PW+ G +F DTL+DADL ++LGWQ+ +G D R+ +P +Q KFDPEG
Sbjct: 355 KNLLIPWQEGENWFRDTLVDADLASNVLGWQWTAGCGADAAPYFRIFNPILQSQKFDPEG 414
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELG---LNYPKPIIDLDLGRER 476
EY+R+W+PEL + IH P ELG +YP PI+D RER
Sbjct: 415 EYIRRWVPELRARDNKQIHLP------------RELGDGLTDYPLPIVDFKASRER 458
>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
Length = 486
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 180/494 (36%), Positives = 271/494 (54%), Gaps = 24/494 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTW---CPKEEGQFYPGRVSRWWLKQSLSYL 62
+IVWFR+DLR+ DN AL AA++G V PV+ W P Q G +WWL SL+ L
Sbjct: 10 SIVWFRQDLRVADNAALYHAAQEGPVIPVFIWDDAAPLTNSQAI-GAAGKWWLHHSLTAL 68
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ L L +VL +T+ L E KA V +N YD + RD IK +L E G
Sbjct: 69 REQLGDL---VVLRGDPATV--LQELALETKAEAVRWNRAYDEYGIERDKKIKTELRESG 123
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID- 181
+ V+S+ G++L+EPW+I G ++ + YW + ++ + A + P ++ A G +
Sbjct: 124 LMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYW-RAVKARGVAAPLPVPDKIELAVGWVSL 182
Query: 182 GCSIEDLGLEDE--SEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
G DL D +E N W+PG A + L F++Q L Y + R + +
Sbjct: 183 GIEALDLLPRDPNWAEGWENV-----WTPGEQGARERLCVFLDQGLNGYGELRNRPDLPN 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S LSP+L FGE+S +++ M + + E FL + RE+S +L F+
Sbjct: 238 VSRLSPHLRFGEISPTQIWATTQMH-----ADVHPEHATDADKFLSEIVWREFSYHLLFH 292
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP E+ +PW + + +AW++G+TGYP+VDAGMRELW TG++HNR+R+IV+
Sbjct: 293 FPDLPEKNWKVGFDAYPWRENAEDLRAWQRGQTGYPIVDAGMRELWQTGYMHNRVRMIVA 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK L + W+ G +F DTLLDAD+ + WQ++SG+ D R+ +P Q KF
Sbjct: 353 SFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAPYFRIFNPYTQAQKF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G Y+R+W+PEL + + P DA P L+AAGV LG YP P++D R++
Sbjct: 413 DPDGAYIRKWVPELKDLRAPQLFAPQDASPMDLRAAGVRLGETYPLPMVDHQTARKKALD 472
Query: 480 AIFKMWEMEAADNA 493
++ + E A+NA
Sbjct: 473 G-YEAVKAENAENA 485
>gi|402851511|ref|ZP_10899666.1| Deoxyribodipyrimidine photolyase [Rhodovulum sp. PH10]
gi|402498244|gb|EJW10001.1| Deoxyribodipyrimidine photolyase [Rhodovulum sp. PH10]
Length = 493
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 249/479 (51%), Gaps = 6/479 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL +AAR G +E P G +RWWL SL LG+
Sbjct: 13 VLVWFRDDLRVADHPALDSAARKGLPVAALFVLDEESPGLRPLGGAARWWLAGSLRALGE 72
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L G LVL + + E +A AT V +N Y+P + D +++ L G++
Sbjct: 73 GLAQRGVTLVL-RRGGAATVVPEVAAAAGATTVAWNRRYEPAAATIDRTVEAALARQGVA 131
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+++ LL EP + + G F F + L P + LP +Q + +
Sbjct: 132 VETFQASLLAEPEALRTKSGKPFAVFTPFLRAVLAGP-SPRAPLPAPGPMQGVEGLASDA 190
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++D LE + + L W+ G + A L+EFVE L Y R + TS LS
Sbjct: 191 LDDWALEPQRPDWAGGLR-ETWTRGEAAAQARLSEFVEDGLAGYADKRDRPDLPHTSRLS 249
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P L FGELS +VF + + A V F+ + RE+S +L P
Sbjct: 250 PRLRFGELSPFQVFSAAALARE--APPGRRPSDTDVDKFVAELVWREFSWHLLAAHPDIA 307
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ FPW D AW++G TGYP+VDAGMRELW TGW+HNR+R++ +SF VK
Sbjct: 308 TANIQEKFDAFPWRDDPAALSAWQRGETGYPIVDAGMRELWTTGWMHNRVRMVAASFLVK 367
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL WR G ++F DTL+DAD + WQ+++GS D R+ +P +QG KFDP G+
Sbjct: 368 HLLTDWRAGERWFQDTLVDADAASNPASWQWVAGSGADAAPYFRIFNPVLQGRKFDPAGD 427
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
YVRQ++P L +P +H P+ A P L AAGV LG YP P++DL+ GRER A+ +
Sbjct: 428 YVRQFVPALRSLPAPAVHAPFAARPLDLAAAGVTLGKTYPAPVVDLEAGRERALDALAR 486
>gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas
albilineans GPE PC73]
gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein
[Xanthomonas albilineans GPE PC73]
Length = 503
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 170/469 (36%), Positives = 257/469 (54%), Gaps = 20/469 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+ D PAL AA G PVY P++EG + G S WL++SL+ L
Sbjct: 34 AIVWFRRDLRLHDQPALHAALAAGHTPVPVYLHSPEDEGDWAAGAASCAWLQRSLAALDA 93
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ L+L + + AL + I+ A V +N Y+P + RD +K +L LG+
Sbjct: 94 QLRACGSRLILRRGPAE-HALRQVIAECGAVAVYWNRRYEPATQPRDARLKRELRALGLE 152
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+NG LL+EPW++ ++G + F +W L PA + P L + +
Sbjct: 153 VHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLPPPPQALHSLA 212
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ LGL + W PG A + L FV+ L Y R + TS LS
Sbjct: 213 LDALGLMSAHDWDRG--FWECWQPGEQGAHEALDVFVDGALRDYVAGRDRPDQVGTSRLS 270
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++ ++R +G R+++ +L +FP T
Sbjct: 271 PHLHFGEIAPWRIVSAL-------QQHRRAATGTAIDGYIRQLGWRDFAYHLLHHFPHTP 323
Query: 305 ERPLLSNLKYFPWHADLG--NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
ER L + F W A G +AW++GR+G P+VDAG+RELW TGW+HNR+R+IV+S+
Sbjct: 324 ERNLNPRFERFRW-ATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRVRMIVASYL 382
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 383 CKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQKFDPQ 442
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDL 470
G Y+ +W+PELA +P PW P + + A +YP+ PI+DL
Sbjct: 443 GAYIARWVPELAALPVADRFAPWLVPQRLARVAP-----HYPRQPIVDL 486
>gi|190573805|ref|YP_001971650.1| DNA photolyase [Stenotrophomonas maltophilia K279a]
gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
Length = 473
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 177/473 (37%), Positives = 253/473 (53%), Gaps = 30/473 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P EEG++ PG S W +SL+ L
Sbjct: 6 ALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAALDA 65
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL ++ +L AL I+ A V +N Y+P + RD +IK L E GI
Sbjct: 66 DLRTRGSSLVL-RSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLREQGID 124
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L PA P L A +D +
Sbjct: 125 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEAL--APHAVDSLA 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++DL L + + W PG + A + L+ F + L Y + R TS LS
Sbjct: 183 LDDLQLAPTLDWDTG--FWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES------VTFFLRAMGLREYSRYLCF 298
P+LHFGE++ ++ L EG S + +LR +G R+++ +L
Sbjct: 241 PHLHFGEIAPWRIAHAL-------------EGLRSAGTDADIDGYLRQLGWRDFAYHLLH 287
Query: 299 NFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+FP T L FPW AW++G TG P+VDAG+RELW TG++HNR+R+I
Sbjct: 288 HFPKTPTDNLNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMI 347
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+S+ K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q
Sbjct: 348 VASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 407
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
KFDP+ Y+ +W+PELA +P + PW P L A G P P++DL
Sbjct: 408 KFDPQARYISRWVPELAALPVKARFAPWQHP---LLLATHAPGYP-PTPLVDL 456
>gi|335035151|ref|ZP_08528494.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
gi|333793582|gb|EGL64936.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
Length = 479
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 263/481 (54%), Gaps = 23/481 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DN AL AA G V PVY +E+ G WWL SL+ L
Sbjct: 8 VIVWFRKDLRLSDNLALLAAVEHGGPVIPVYI---REKSAGPLGGAQEWWLHHSLAALSS 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ G LVL ++ L + IS A VV+N YDP + D + K+KL + G++
Sbjct: 65 SLEKAGGRLVLASGDAE-RILRDLISETGADTVVWNRRYDPTGMATDKAFKQKLRDDGLT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGC 183
VQS++G LL+EP + + G + + + + L+ EP A P L
Sbjct: 124 VQSFSGQLLHEPSRLQTKSGGPYRVYTPF-RRALEGGEEPHAPADAPKSLKAPEVWPKSE 182
Query: 184 SIEDLGL----EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ D L D ++ S+ W+PG + A L +F++ L Y + R +
Sbjct: 183 KLADWKLLPTKPDWAKDFSDI-----WTPGENGAKDKLDDFIDGALKGYEEGRDFPAKPA 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLS +L GE+S V+ K + ++ F + + RE+ +L F+
Sbjct: 238 TSLLSSHLAAGEISPAAVWHA--TKGL-----SRHIASNDISRFRKEIVWREFCYHLLFH 290
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP E+ + FPW D +FKAW +G TGYP+VDAGMR+LW G +HNR+R+IV+
Sbjct: 291 FPELDEKNWNDSFDAFPWRDDETSFKAWTRGMTGYPIVDAGMRQLWQHGIMHNRVRMIVA 350
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF +K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P +QG KF
Sbjct: 351 SFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKF 410
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G+YVR+++PEL ++ ++IH P++AP +VLK AGVELG YP PI+D RER
Sbjct: 411 DGDGDYVRRFVPELEKLERKYIHKPFEAPKDVLKKAGVELGKTYPLPIVDHGKARERALA 470
Query: 480 A 480
A
Sbjct: 471 A 471
>gi|340356010|ref|ZP_08678676.1| deoxyribodipyrimidine photolyase [Sporosarcina newyorkensis 2681]
gi|339621805|gb|EGQ26346.1| deoxyribodipyrimidine photolyase [Sporosarcina newyorkensis 2681]
Length = 470
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 250/477 (52%), Gaps = 18/477 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFR+DLR+ D+PAL AA G V PV+ P+ + S WWL SL L
Sbjct: 2 GKTIVWFRKDLRLHDHPALVEAAAHGEVVPVFI-LPESRQE-----ASDWWLHHSLLELQ 55
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ +L++ K S + LL A +VFN LYDP S ++ + ++L +
Sbjct: 56 KKFAERQIQLIVRKG-SPVGQLLAVQQDSGAEGIVFNELYDPASRRQEQDVLSAFLDLEV 114
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
V+S+ G LL P I ++ + F +W + Q ++E + LP ++ ++ +
Sbjct: 115 QVRSHQGTLLVPPTLILNKTCEPYKVFTPFWKRLRQERVEQS--LPVPNMLPSSTLL--T 170
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S+ D + S + W PG + A + F Q L Y + R S L
Sbjct: 171 SLPDSKWDLLPGPSWHGKFIHYWRPGEAAAIECWKTFSGQGLSSYKEGRDIPAKPHVSRL 230
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYL G +SVR LW + + F G + FLR + R+++ Y FP
Sbjct: 231 SPYLAAGNISVR----SLWHAAL---HQTEFIGDDQTEAFLRQLAWRDFAHYQLLYFPKM 283
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+RP+ FPW + AW+ GRTGYPLVDAGMRELW TG+IHNR+R++ +SF V
Sbjct: 284 LDRPIRPEFDRFPWQEAGEHLAAWKTGRTGYPLVDAGMRELWETGYIHNRVRMVAASFLV 343
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G +F TL+D D + +GWQ+++GS D R+ +P +QG KFD
Sbjct: 344 KHLLVDWREGQAWFEQTLVDWDAANNAMGWQWVAGSGCDASPYFRIFNPTVQGEKFDGAA 403
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
YV++WLPEL MP +++ P +AP +VL AGV LG NYP PI+D R R +A
Sbjct: 404 GYVKKWLPELESMPEKFVFRPAEAPADVLSTAGVRLGGNYPLPIVDHQAARARALEA 460
>gi|424870229|ref|ZP_18293891.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393165930|gb|EJC65977.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 483
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 172/467 (36%), Positives = 252/467 (53%), Gaps = 14/467 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DN AL AA R G + P+Y P+ G G WWL SL L +
Sbjct: 9 VILWFRKDLRLDDNQALTAAHRSGRPIIPLYISEPETAGTGPLGAAQAWWLHHSLKALDR 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LVL E+ L L I A V +N YDP D IK +L + I
Sbjct: 69 SLRKRQGRLVLASGEA-LEVLCVFIKESGADAVFWNRRYDPSGTSIDIRIKHQLEKQAIE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASIL-PPWRLVQAAGTIDGC 183
V+S+ G LL+EP + G + + +W + L+ EP L P +L +
Sbjct: 128 VRSFGGQLLHEPSRLMTGNGTPYRAYTPFW-RALEGGGEPEPPLEAPAKLRLTSQFPKSE 186
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++E L + W+PG + L FVE L Y +NR +TS+L
Sbjct: 187 TLESWKLLPAKPDWAGDFADL-WTPGEEGGHEKLRAFVEDALDGYKENRDYPARPTTSML 245
Query: 244 SPYLHFGELSVRKVFQCL-WMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
SP+L GE+S +++ + Q + A + + F + + RE+S +L F+FP
Sbjct: 246 SPHLALGEISPARIWDATRGLSQRVPAAD--------IVHFRKEIAWREFSYHLLFHFPR 297
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
F W D G+F+AWR+G TGYP+VDAGMR+LW GW+HNR+R+IV+SF
Sbjct: 298 LASANWNDRFDGFEWRNDSGDFQAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFL 357
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG KFDP+
Sbjct: 358 IKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPD 417
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
G+YVR ++PEL + ++IH P++AP ++L AG+ LG YPKPI+D
Sbjct: 418 GDYVRTYVPELRELGAKYIHRPFEAPTSMLDEAGITLGQTYPKPIVD 464
>gi|352080494|ref|ZP_08951433.1| Deoxyribodipyrimidine photo-lyase [Rhodanobacter sp. 2APBS1]
gi|351683775|gb|EHA66851.1| Deoxyribodipyrimidine photo-lyase [Rhodanobacter sp. 2APBS1]
Length = 470
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 262/478 (54%), Gaps = 20/478 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+V FRRDLR+ DNPA +AA A V PV+ +EG++ G SRWWL SL+ L +
Sbjct: 4 ALVLFRRDLRLADNPAWSAACAEHAQVLPVFI-HSGDEGRWSAGAASRWWLHHSLAALAR 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L A L L + E L L I++ A V +N LY+P ++ RD IK L GI+
Sbjct: 63 QLHDASAGLHLRRGEP-LDILRALIASSGARAVYWNRLYEPAAIARDTRIKSALRADGIA 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+N L EPW I ++ + F YW + L+ +++P LP + DG
Sbjct: 122 VHSHNAALWCEPWAIATQQAAPYKVFTPYW-RNLRPRLQPVEPLPAPHVPGWHELPDGLP 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L L + L W PG + A ++L F + + Y R + TS LS
Sbjct: 181 LAALELLPRIAWAGG--LAARWQPGEAGARELLEIFGDDAIGDYAHARDLPARHGTSRLS 238
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R++ L + A + + + + +LR +G RE++ +L ++FP T
Sbjct: 239 PHLHFGEISPRQIQFELDRR----AHATDAKRRPDLEPYLRELGWREFAHHLLYHFPHTP 294
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
FPW AD + W++GRTG PLVDAGMRELW TGW+HNR+R+IV+SF
Sbjct: 295 TDNFNPRFDDFPWAPADHALLERWQRGRTGIPLVDAGMRELWRTGWMHNRVRMIVASFLT 354
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W+ G ++FWDTL+DADL + LGWQ+++G D R+ +P Q KFDP+G
Sbjct: 355 KNLRQHWQHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPVTQAKKFDPDG 414
Query: 424 EYVRQWLPELARMPTEWIHHPW-DAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+R+WLPELA P +H PW DA ++LK +G YP P+++L R++ A
Sbjct: 415 IYLRRWLPELAEAPLALLHEPWRDA--DLLKRSG------YPAPMVELGQSRQQALDA 464
>gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 484
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 172/481 (35%), Positives = 259/481 (53%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+EDNPAL AA G P+Y P EEG++ PG SR W +SL+ L
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 75
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++LG+ LV+ + ++ L E I+ A V +N Y+P + RD IK L E GI
Sbjct: 76 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 134
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS N LL+EPW++ ++G + F +W PA++ P L ++ +
Sbjct: 135 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLPPLPASLKTDA 194
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + W PG + A ++L F++ L Y +NR + TS LS
Sbjct: 195 LDTLQLVPGVQWDQG--FWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 252
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + ++R +G R+++ +L +FP T
Sbjct: 253 PHLHFGEIAPWRIASTL-------ETHRTARNGAEIDGYVRQLGWRDFAYHLLHHFPDTT 305
Query: 305 ERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ L F W D +AW++GRTG P+VDAGMR+LW TGW+HNR+R+IV+SF
Sbjct: 306 NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 365
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 366 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 425
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQAIF 482
Y+ +W+PEL ++ + PW P ++ + A Y + PII L GR+ A
Sbjct: 426 AYITRWVPELGKLAVKERFAPWLHPLSLARVAP-----QYRRAPIIGLAEGRDAALAAYA 480
Query: 483 K 483
K
Sbjct: 481 K 481
>gi|390449652|ref|ZP_10235256.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
gi|389663847|gb|EIM75362.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
Length = 483
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 169/476 (35%), Positives = 243/476 (51%), Gaps = 11/476 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++ FR DLR+ DN AL AAA G + + + EG G RWWL SL+ L +
Sbjct: 10 VLLLFRHDLRLSDNLALCAAAETGRPIVAAFILDEESEGIRPLGGARRWWLHHSLAALAE 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L G +LVL + AAL +A V +N YDP + D +K L + GI
Sbjct: 70 DLGKHGLKLVLRRGSMARAAL-ALADETRACTVYWNRRYDPAGIAADTDLKAGLRDRGIE 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS+ G LL+EPW + G + F +W L P L + ++ G
Sbjct: 129 AQSFAGHLLHEPWRLKTGSGGPYRVFTPFWRALLDSVHPRPPADRPETLTPSRESVAGDR 188
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ED L + L W PG + A K LT F++ Y R + TS +S
Sbjct: 189 LEDWKLLPTKPDWATGLR-ETWEPGEAGARKRLTAFLDGAGEGYKTRRDLMAEAGTSGIS 247
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L GE++ +++Q L + ++ + F R +G RE+ +L F+ P
Sbjct: 248 PHLAHGEITPFQIWQTL--------ESDSSIADGDLQAFRREIGWREFCWHLLFHNPKLA 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
N FPW D + W++G TGYP+VDA MR+LW TGW+HNR R++V+SF VK
Sbjct: 300 TENFNRNFDAFPWRGDDTALRHWQRGETGYPVVDAAMRQLWQTGWMHNRARMVVASFLVK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L + WR G +FWDTL+DAD + WQ+++GS D R+ +P +QG KFDP G+
Sbjct: 360 HLGIHWREGEAWFWDTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGQKFDPVGD 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
YVR+++PEL +P + +H PW AP AGV+LG YP+P++D RER A
Sbjct: 420 YVRRYVPELDALPDKHLHQPWKAPEEACGKAGVKLGDTYPRPLVDHRAARERALDA 475
>gi|424668223|ref|ZP_18105248.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
gi|401068485|gb|EJP77009.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
Length = 471
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 250/467 (53%), Gaps = 18/467 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P EEG++ PG S W +SL+ L
Sbjct: 4 ALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL ++ +L AL I+ A V +N Y+P + RD +IK L E GI
Sbjct: 64 DLRTRGSSLVL-RSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLREQGID 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L PA P L A D +
Sbjct: 123 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPAPQAVPEALAPHAA--DSLA 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++DL L + + W PG + A + L+ F + L Y + R TS LS
Sbjct: 181 LDDLELAPTLDWDTG--FWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRLS 238
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + +LR +G R+++ +L +FP T
Sbjct: 239 PHLHFGEIAPWRIAHAL-------EGLRSAGTDADIDGYLRQLGWRDFAYHLLHHFPKTP 291
Query: 305 ERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
L FPW AW++G TG P+VDAG+RELW TG++HNR+R+IV+S+
Sbjct: 292 TDNLNPRFDRFPWATPSDAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLC 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 352 KHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
Y+ +W+PELA +P + PW P L A G P P++DL
Sbjct: 412 RYISRWVPELAALPVKARFAPWQHP---LLLATHAPGYP-PTPLVDL 454
>gi|350552515|ref|ZP_08921715.1| DNA photolyase FAD-binding [Thiorhodospira sibirica ATCC 700588]
gi|349794054|gb|EGZ47877.1| DNA photolyase FAD-binding [Thiorhodospira sibirica ATCC 700588]
Length = 480
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 243/444 (54%), Gaps = 11/444 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ + WF RDLR+ D+PAL A G V PVY EE + PG SRWWL SLS L
Sbjct: 2 HSVLCWFSRDLRLADHPALYHALHSGLPVIPVYLHAQHEEAPWAPGAASRWWLHHSLSAL 61
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L+ + + LV+ + +S LA LL + A +VV+N Y+P RD + L + G
Sbjct: 62 MHDLERINSRLVIRQGDS-LAQLLSLVRETGAVQVVWNRRYEPHLQQRDQQVATALQQYG 120
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
++V +N + + P + G + F +W +CLQ + + P L+ + D
Sbjct: 121 VAVHQFNATVWFAPGTLCKADGEPYRVFTPFWKRCLQTGLARPCLPRPASLLAPSHWPD- 179
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
S+E L+ + + L W+PG + A L +F+++ + Y + R T+
Sbjct: 180 -SLELAALDLLPRQPWDQGLKASWTPGEAGAWHRLHDFLKEPVKHYAQGRDYPAQPGTAR 238
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LS +LHFGE+S ++ Q L + G ES F+R +G RE++ ++ +FP
Sbjct: 239 LSAHLHFGEISPGQIHAAC---QPLLDQGAAHSGIES---FIRELGWREFAHHILHHFPR 292
Query: 303 THERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
T + PL FPW D W+QG+TG PLVDAGMRELW TGW+HNR+R+I +SF
Sbjct: 293 TPQLPLYPKFADFPWADCDDPALTRWQQGQTGIPLVDAGMRELWHTGWMHNRVRMICASF 352
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K L + WR G ++FWDTL+DADL + LGWQ+ +G D R+ +P +QG +FDP
Sbjct: 353 LTKNLKIHWRCGARWFWDTLVDADLASNTLGWQWTAGCGADAAPFFRVFNPVLQGQRFDP 412
Query: 422 EGEYVRQWLPELARMPTEWIHHPW 445
+GEYV +++PEL +P ++ H PW
Sbjct: 413 KGEYVTRFVPELRTIPLKYRHQPW 436
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/485 (36%), Positives = 268/485 (55%), Gaps = 23/485 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DN AL AAA G V PVY +E+ GR WWL SL+ L
Sbjct: 8 VIVWFRKDLRLSDNLALLAAADHKGPVIPVYI---REKCCGALGRAQEWWLHHSLTALHA 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+LK G+ LVL ++ L I+ A V +N YDP + D ++K L + G++
Sbjct: 65 ALKKTGSRLVLASGDAE-EVLRRLIAETGADTVFWNRRYDPEGISTDKTLKRALRDEGLT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGC 183
V+S++G LL+EP ++ + G + + +W + L+ EP A P RL
Sbjct: 124 VRSFSGHLLHEPSKLQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPDRLNTPRNWPRSE 182
Query: 184 SIEDLGL----EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
++++ L D + + S+ W+PG A + L++F++ L Y + R ++
Sbjct: 183 TLDEWQLLPKRPDWAREFSDI-----WTPGEDGAREKLSDFIDGALKGYEEGRDLPAKDA 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L GE+S V+ K + ++ F + + RE+ +L F+
Sbjct: 238 TSRLSPHLALGEISPATVWHA--TKGL-----SRHIASNDISRFRKEIVWREFCYHLLFH 290
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP E+ + F W D +F AW +G TGYP+VDAGMR+LW G +HNR+R+IV+
Sbjct: 291 FPELDEKNWNDSFDAFSWRDDDKSFTAWTRGMTGYPIVDAGMRQLWRHGTMHNRVRMIVA 350
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF +K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P +QG KF
Sbjct: 351 SFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKF 410
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G+YVR+++PELAR+ ++IH P++AP VL AG+ LG YP P++D RER
Sbjct: 411 DGDGDYVRRFVPELARLERKYIHKPFEAPKEVLTKAGITLGETYPNPVVDHGRARERALA 470
Query: 480 AIFKM 484
A ++
Sbjct: 471 AYARV 475
>gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisB18]
gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB18]
Length = 483
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 250/466 (53%), Gaps = 11/466 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
++VWFR DLR+ D+PAL A R G+ +E P G +RWWL QSL L
Sbjct: 9 SLVWFRDDLRLSDHPALDDAGRSGAAVVCLYVLDEESAGLRPLGGAARWWLAQSLRSLSA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYD-PVSLVRDHSIKEKLVELGI 123
L + G L+L + + + E A +V +N + + P V D + +L +LG+
Sbjct: 69 DLAARGGVLILRRGPAA-RIVAEVAREAGAVRVSWNDVPNRPARAVAD-DLAARLGDLGV 126
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ Q GDLL P + ++G F +W + L + P + P + + + ++
Sbjct: 127 AAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVLALGDPPQPLTAP-KALCSVPSLASD 185
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+++D LE + L R W PG + A + L F+ + Y R + +TS L
Sbjct: 186 TLDDWKLEPTRPDWAGGLRAR-WQPGEAAAQRGLQHFLHGAIAGYATERDRPDRVATSTL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L FGE+S R+V+ +A E V FL +G RE+ R+L F+ P
Sbjct: 245 SPHLRFGEISPRQVWHA-----ARFAAAERPAIAADVDKFLSELGWREFCRHLLFDNPDL 299
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R L FPW D +AW++GRTGYPLVDAGMREL TG +HNR+R++ +SF V
Sbjct: 300 ATRNLQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGVMHNRVRMVAASFLV 359
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LLL WR G +FWDTL+DAD + WQ+++G D R+ +P +QG +FD EG
Sbjct: 360 KHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRVFNPILQGERFDAEG 419
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+YVR+++PE+A + + IH PW A P L+AAGV LG YP PI+D
Sbjct: 420 DYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIVD 465
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 172/479 (35%), Positives = 249/479 (51%), Gaps = 16/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFRRDLR++DN AL AA G + P+Y P G G WWL SL L +
Sbjct: 33 VILWFRRDLRLDDNQALNAAHLSGRPIIPLYINEPAAAGTGPLGAAQAWWLHHSLEALDR 92
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL LVL ++ L L I A V +N YDP + D IK++L + I
Sbjct: 93 SLHERQGGLVLASGDA-LEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQAIE 151
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+S+ G LL+EP + G + + +W + P +L AA +
Sbjct: 152 ARSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLAAQRPASET 211
Query: 185 IED---LGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ L + + K L W+PG A + L+ FVE L Y +NR +TS
Sbjct: 212 LKSWKLLPTKPDWAKDFTDL----WTPGEQGARERLSAFVEDELKGYKENRDYPAKPATS 267
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
+LSP+L GE+S +++ N + F + + RE+S +L F+FP
Sbjct: 268 MLSPHLALGEISPARIWDAT-------RGLSNRVPAADIVHFRKEIAWREFSYHLLFHFP 320
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
F W D G+F+AWR+G TGYP+VDAGMR+LW GW+HNR+R+IV+SF
Sbjct: 321 RLASENWNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASF 380
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG FDP
Sbjct: 381 LIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGETFDP 440
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+G+YVR +PEL R+ ++IH P++AP + L AG+ LG YPKPI+D R+R A
Sbjct: 441 DGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHASARDRALAA 499
>gi|424910085|ref|ZP_18333462.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846116|gb|EJA98638.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 479
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 176/485 (36%), Positives = 268/485 (55%), Gaps = 23/485 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DN AL AAA G V PVY +E+ GR +WWL SL+ L
Sbjct: 8 VIVWFRKDLRLSDNLALLAAADHKGPVIPVYI---REKCCGALGRAQKWWLHHSLTALHA 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+LK G+ LVL ++ L I+ A V +N YDP + D ++K L + G++
Sbjct: 65 ALKKTGSRLVLASGDAE-EVLRRLIAETGADTVFWNRRYDPEGISTDKTLKRALRDKGLT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGC 183
V+S++G LL+EP ++ + G + + +W + L+ EP A P RL
Sbjct: 124 VRSFSGHLLHEPSKLQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPDRLNAPRNWPRSE 182
Query: 184 SIEDLGL----EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
++++ L D + + S+ W+PG A + L++F++ L Y + R ++
Sbjct: 183 TLDEWQLLPKRPDWAREFSDI-----WTPGEDGAREKLSDFIDGALKGYEEGRDLPAKDA 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L GE+S V+ K + ++ F + + RE+ +L F+
Sbjct: 238 TSRLSPHLALGEISPATVWHA--TKGL-----SRHIASNDISRFRKEIVWREFCYHLLFH 290
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP E+ + F W D +F AW +G TGYP+VDAGMR+LW G +HNR+R+IV+
Sbjct: 291 FPELDEKNWNDSFDAFNWRDDDKSFTAWTRGMTGYPIVDAGMRQLWRHGTMHNRVRMIVA 350
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF +K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P +Q KF
Sbjct: 351 SFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQNEKF 410
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D +G+YVR+++PELAR+ ++IH P++AP VL AG+ LG YP PI+D RER
Sbjct: 411 DGDGDYVRRFVPELARLERKYIHKPFEAPKEVLTKAGITLGETYPNPIVDHGRARERALA 470
Query: 480 AIFKM 484
A ++
Sbjct: 471 AYARV 475
>gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
Length = 478
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 263/479 (54%), Gaps = 22/479 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVW R DLR+ DNPAL AAA G V P+Y + G G S WWL +SL+ L +
Sbjct: 10 IVWLRNDLRLADNPALIAAAATGRPVIPLYI-LDETPGVRPMGDASLWWLDKSLAALDAA 68
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ G+ L+L + + A L E ++ +A VV+N LYD S+ RD ++K L + G++
Sbjct: 69 LRATGSRLILRRGPAR-AVLEEVVADAEAAAVVWNRLYDAASIERDSALKAWLKDEGVAC 127
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYW----DKCLQMQMEPASILPPWRLVQAAGTID 181
+S+N LL EPW + + G + F YW D+ + +EPA P L A
Sbjct: 128 ESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLHDVHVEPA----PKTLAAPAHWPH 183
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G ++ED L S W+PG + A L +F+ + Y R G +TS
Sbjct: 184 GDALEDWTLHPALLDWSTGF--DLWTPGEAGALARLDDFLSGPVQDYGHKRDFPGVEATS 241
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+LHFGE+ R+V W A+ + + V FL +G RE++ + F+ P
Sbjct: 242 RLSPHLHFGEIGPRQV----WAAARHAAEAGDAPAGQ-VEKFLSEIGWREFNHSILFHNP 296
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FPW + F+AW +G+TGYP+VDAGMRELWATG++HNR+R+IV+SF
Sbjct: 297 DLPHTSFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVASF 356
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+ WR G +FWDTL+DADL ++ WQ+++G D R+ +P QG KFDP
Sbjct: 357 LVKHLLIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKFDP 416
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G YVR+W+PELA++P IH PW A P+ G YP+PI+ RER +A
Sbjct: 417 AGAYVRRWVPELAKLPDALIHEPWKASPD----PGAAAARIYPEPIVGHPAARERALEA 471
>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
Length = 492
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 249/475 (52%), Gaps = 9/475 (1%)
Query: 7 IVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW R DLR++DNPALA AA + + P+ + +G G +WWL SL S
Sbjct: 20 VVWLRDDLRLDDNPALALAAETNRPIVPLVVLDEESDGVRALGGAHKWWLHHSLESFASS 79
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G+ L L + ++ +L+ I A+ + FN YD S D +I E L + +SV
Sbjct: 80 LRGKGSRLTLRRGKAK-DQVLDVIEKTGASALFFNRRYDQASRAVDDAIGEALGDQ-VSV 137
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ + +LL++P + G + F +W K + I PP L Q +
Sbjct: 138 ERFTANLLHDPENVETTSGGYYKVFTPFWRKVSESGPR-DPIDPPDGLKQPDTFPQSDDL 196
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
ED L S + W+PG A F + L Y+K R++ + TS +SP
Sbjct: 197 EDWELLPTKPDWSGGI-ADFWTPGEKAAHDRFETFCDDLLSDYHKGRERPYADDTSRMSP 255
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
YL +GE+S + LW +A E++ FL+ + R+++ +L F+F +
Sbjct: 256 YLRWGEISPYR----LWHTAQAYANRRKTVPDEAIRTFLQELVWRDFNYHLLFHFGPLAD 311
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
+ F W + + KAW+ G TGYP+VDAGMR+LW TGW+HNR+R+IV SF K
Sbjct: 312 KNFNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMIVGSFLTKD 371
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++FWDTL+D D+ + WQ+I G+ D R+ +P Q +FD G Y
Sbjct: 372 LLIDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSERFDKNGAY 431
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+RQ++PEL MP + IH PW A +VL+ AGV+LG YP+P++D R+R A
Sbjct: 432 IRQFVPELKEMPDKHIHAPWKADKDVLEKAGVKLGETYPEPLVDHSEARDRALSA 486
>gi|344207024|ref|YP_004792165.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
gi|343778386|gb|AEM50939.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
Length = 471
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 173/468 (36%), Positives = 250/468 (53%), Gaps = 20/468 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P EEG++ PG S W +SL L
Sbjct: 4 ALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLGALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL ++ +L+ L I A V +N Y+P + RD +IK L E GI
Sbjct: 64 DLRARGSSLVL-RSGDSLSILQLLIEQTGAEAVYWNRKYEPATQPRDATIKRTLREQGID 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L PA P L T+D +
Sbjct: 123 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPQALT--PHTVDSLA 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++DL L + W PG + A + L+ F + L Y + R TS LS
Sbjct: 181 LDDLQLAPTLDWDIG--FWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRLS 238
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + +LR +G R+++ +L +FP T
Sbjct: 239 PHLHFGEIAPWRIAHAL-------EGLRSAGTDADIDGYLRQLGWRDFAYHLLHHFPKTP 291
Query: 305 ERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
L FPW W++G TG P+VDAG+RELW TG++HNR+R+IV+S+
Sbjct: 292 TDNLNPRFDRFPWATPSDAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLC 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 352 KHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDL 470
Y+ +W+PELA +P + PW P +L AA YP+ P++DL
Sbjct: 412 RYISRWVPELAALPVKARFAPWQHP--LLLAAHAP---GYPRTPLVDL 454
>gi|402819360|ref|ZP_10868928.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
gi|402511507|gb|EJW21768.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
Length = 474
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 262/484 (54%), Gaps = 27/484 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I WFR+DLR+ DNPAL AA G +V P++ + P + G + WW +QSL+ L
Sbjct: 5 VIYWFRQDLRLADNPALLHAAHSGKTVIPIFIFDPDDRSL---GMAASWWRQQSLAKLEA 61
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI-KATKVVFNHLYDPVSLVRDHSIKEKLVELG- 122
+LK +G +L + E +L+ +S +A ++V+N YD S+ RD IK+ L G
Sbjct: 62 ALKKIGGKLSFY--EGRPVEVLQKLSDFYEADEIVWNRQYDGYSVSRDKEIKQTLPNSGT 119
Query: 123 --ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I +S+N LL+EPW I ++ G F F YW +C+ A PP L ++ +
Sbjct: 120 GNIECKSFNASLLFEPWLIQNKSGSYFKVFTPYWRQCMAGNAPEAPCPPPTEL-RSHPDV 178
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D I L + L+ W+PG + A + F+E+ L Y + R +T
Sbjct: 179 DPFQIP---LPASPLTADADLIAEEWTPGEAGAYQQFENFIEEGLEIYAEFRDFPDRPAT 235
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYL +GE+S R++ W K E F +++++ FL +G RE+S +L ++
Sbjct: 236 SRLSPYLRWGEISPRQI----WSKIQFVKSHEKF-SEQTISKFLAEIGWREFSHHLIYHV 290
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + L + FPW + W+ G TGYPLVDAGMREL TG++HNR+R+I +S
Sbjct: 291 PEMATQNLQPSFNDFPWLENEEALLQWQAGNTGYPLVDAGMRELRRTGYMHNRVRMITAS 350
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L++ WR G KYFWD LLDA +I GWQ+++GS D R+ +P IQG KFD
Sbjct: 351 FLIKHLMIDWRAGEKYFWDRLLDACPANNITGWQWVAGSGADAAPFFRIFNPIIQGEKFD 410
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGL---NYPKPIIDLDLGRERL 477
P+G Y ++++PEL+ + + + PW +K+ ++L YP PI++ R R
Sbjct: 411 PQGAYTKRFIPELSHLEQKHLFSPWK-----VKSDNMDLDFQEGQYPDPIVEHGYARNRA 465
Query: 478 TQAI 481
A
Sbjct: 466 LDAF 469
>gi|383787192|ref|YP_005471761.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
gi|383110039|gb|AFG35642.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
Length = 446
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 252/438 (57%), Gaps = 10/438 (2%)
Query: 48 GRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVS 107
G +WWL +SL L +SLKSLG +L++ K + + + L IS + A V +N +DP++
Sbjct: 13 GGAKKWWLHKSLLSLIESLKSLGVKLIIRKGKDSSSVLKSLISEVHADSVYWNKRFDPLA 72
Query: 108 LVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI 167
RD +IK++L+ GI+V+ ++G LL+ P + G + F +W K + A +
Sbjct: 73 KSRDENIKKELISSGINVECFDGFLLHNPNSFFTADGKPYGVFTPFWKKFQNEIVVSAPL 132
Query: 168 LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
P RL + +EDL L + + A + WS +A K L F+ L
Sbjct: 133 PVPERLQGVEFDVHLERLEDLNLLPKIKWY--AEMENFWSVSEQDAQKRLNWFISHALDG 190
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y +NR + + TSL+SPYL G +S R++ W + K EG E+ FLR +
Sbjct: 191 YGENRDRPDLDGTSLMSPYLASGLISPRQI----WHSVVNSKKNGVSEGAEA---FLREL 243
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHAD-LGNFKAWRQGRTGYPLVDAGMRELWA 346
RE+S ++ ++ P L FPW D ++ W +G TG P++DAGMR+LW
Sbjct: 244 AWREFSYHVLYHNPDMVNANLKKEFDAFPWRWDKTDDYVKWTKGLTGIPIIDAGMRQLWK 303
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TGW+HNR+R+IV+S+ K LL+ W+ G ++FWDTL+DAD+ ++ GWQ+ +G D
Sbjct: 304 TGWMHNRVRMIVASWLTKNLLIHWKIGEEWFWDTLVDADIANNVQGWQWTAGCGADAAPY 363
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
R+ +P +Q KFDP+G Y+R+W+PELA++P E+IH PW+AP +LK G+ELG +YP P
Sbjct: 364 FRIFNPVLQSKKFDPKGMYIRKWVPELAKLPDEYIHEPWNAPVYLLKMIGLELGKDYPLP 423
Query: 467 IIDLDLGRERLTQAIFKM 484
+ ++ R+R +A K+
Sbjct: 424 MASIEETRKRALEAFEKI 441
>gi|404317161|ref|ZP_10965094.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi CTS-325]
Length = 468
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 169/474 (35%), Positives = 253/474 (53%), Gaps = 30/474 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ +VW R DLRI DNPAL AAA G + VY E + PG +RWWL QSL +
Sbjct: 3 HHALVWLRNDLRINDNPALDAAAETGGHITAVYVHETVAEIR-APGGAARWWLDQSLEAI 61
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ L G EL L +T L + I+ + T++ +N Y P D +K +L E G
Sbjct: 62 RKQLADRGIEL-LIETGDPRDILPQLIAKLAVTELFWNRRYAPAEREFDAKLKSQLKESG 120
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI------LPPWRLVQA 176
V S+ G+LL EPWE+ + F + K L++ P + + P +
Sbjct: 121 TGVTSFPGNLLLEPWELKTASDTPYQVFTPF-AKALRLHNVPRPLSRRQWNVKPTQEAHY 179
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
A + + + GL W+ G A L F+E L Y ++R G
Sbjct: 180 APNVPAWAEKFDGL---------------WNIGEDAARDCLPRFLESTLSTYTEDRDVPG 224
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LSP+L FGE+S R+ + L +E+ + FL + R+++ +
Sbjct: 225 IDGTSRLSPHLRFGEISARQAWYA-----TLAFMDEHHSARAGGEKFLSELIWRDFNYHQ 279
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++ + L W D F+AWR+G+TG+P++DAGMR+LWATGW+HNR+R+
Sbjct: 280 LYHRRDISRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRM 339
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+V+SF K LL+ WR G ++FWDTL+D D+ + WQ+++G D R+ +P +QG
Sbjct: 340 LVASFLTKNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQG 399
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
KFD EG+YVR W+PEL+ + +W+H P++AP +VL +AG+ LG YPKPIIDL
Sbjct: 400 EKFDAEGQYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDL 453
>gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
Length = 442
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 238/438 (54%), Gaps = 8/438 (1%)
Query: 47 PGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPV 106
PG +RWWL QSL LG + + G L+L K + + E A V +N +
Sbjct: 10 PGGAARWWLAQSLRALGAEIAARGGSLILRKGPAA-GVIPEEARESGARAVYWNGIAQAP 68
Query: 107 SLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS 166
+ ++ L +LG+ QS+ GDLL P I ++ G F +W + L + +P
Sbjct: 69 HQAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPFWRRVLSLG-DPPK 127
Query: 167 ILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
LP + ++ I +E L + L R W+PG ++A L +F++
Sbjct: 128 PLPAPKQLRPGPKIVSDRLESWQLAPTKPDWAGGLRER-WTPGEASARARLRDFLKTIAR 186
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
Y +R + TS LSP+L FGELS R+V W A E+ G + FL
Sbjct: 187 GYAGDRDRPDRVGTSGLSPHLRFGELSPRQV----WHAARFAAAEDAALGP-GIEKFLSE 241
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+G RE+ R+L + P L +N FPW +D AW++GRTGYP+VDAG+RELW
Sbjct: 242 LGWREFCRHLLHDHPDLATENLQTNFDGFPWQSDGKVLAAWQRGRTGYPIVDAGLRELWH 301
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TG +HNR+R++V+SF VK LL+ WR G +FWDTL+DAD + WQ+++G D
Sbjct: 302 TGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGADAAPY 361
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
R+ +P++QG KFDP+G YVR+W+PEL +P + IH PW A PN L +AGV LG YP+P
Sbjct: 362 FRVFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAGVTLGKTYPQP 421
Query: 467 IIDLDLGRERLTQAIFKM 484
I+D GRER A K+
Sbjct: 422 IVDHARGRERALSAYAKI 439
>gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
23769]
gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
23769]
Length = 513
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 247/481 (51%), Gaps = 17/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ DNPAL+ A G V ++ P+ + G ++WWL L L
Sbjct: 32 VIVWFRNDLRLSDNPALSHAVASGRPVLCLFVHDPQHAREHALGAAAQWWLDGGLRALHA 91
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L +GA L + ++ LA + + A +VV+N YDP+ D +IK L G+
Sbjct: 92 DLARMGAVLHVACGDA-LALVPRMAAQAGAAEVVWNRRYDPLGRETDTAIKATLKHAGVI 150
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA---GTID 181
S+ +LYEPW + G AF F A+W + + EP LP V AA G +
Sbjct: 151 AHSFAAGVLYEPWTVRTRAGDAFRVFTAWW-RAARASGEPLPPLPAPGHVHAAVSPGAWE 209
Query: 182 GC--SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
GC I+ L L S + L W PG + A L FV+ L Y R + +
Sbjct: 210 GCCVGIDALRLVPVSPDWAGGLR-EAWQPGEAQARDRLHHFVDGGLGGYADARDRPDLPA 268
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP L FG +S R+ + A E + + FL +G R+++ L +
Sbjct: 269 TSRLSPDLRFGHISPRQAWHAAVAAVRGGAAGGMGE--QDLEKFLSELGWRDFAVSLLYA 326
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P + PW D + AW+QGRTGYP+VDAGMR+LW TGW+HNR+R+IV+
Sbjct: 327 QPELVSCNFRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGWMHNRVRMIVA 386
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF K LL WR G +F DTL+DAD+ +++ WQ+++G D R+ +P +Q +F
Sbjct: 387 SFLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRVFNPVLQARRF 446
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G YVR+W+PELA +PT +H PW P + + YP PI+DL GR R
Sbjct: 447 DPDGTYVRRWVPELAGVPTSCVHAPWTCDP------AIRARVAYPSPIVDLQGGRARALA 500
Query: 480 A 480
A
Sbjct: 501 A 501
>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
Length = 486
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 183/486 (37%), Positives = 251/486 (51%), Gaps = 25/486 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V Y + G+ G +RWWL SL L
Sbjct: 10 AVVWFRDDLRVSDHPALVRAAESGRPVIGAYVFDECAGGRPLGG-AARWWLHGSLRALDA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG+ LVL + + +A+ A V +N Y D++++ L GI
Sbjct: 69 ALAALGSRLVLLSGDEA-DTITSFAAALGAGAVYWNRRYALAQRAVDNTVQTALEARGID 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+++N LL+EP ++ + G + F AYW ++ + A + P RL GC
Sbjct: 128 VETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAPRRL-------KGCE 180
Query: 185 IEDLGLEDESEKSSNAL----------LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ + + E + L L W+ G A + L FV+ L Y R +
Sbjct: 181 LPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHRRLRAFVDSRLGGYATGRDR 240
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
G STS LSP++ FG LSVR+V+ + A + + F R +G RE+
Sbjct: 241 PGAASTSRLSPFVRFGNLSVRQVWHA-----AVDAHAHGAATQADLDTFCRELGWREFCY 295
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ FP R L NL PW D AWR+G TGYP VDAGMRELWATGW+HNR
Sbjct: 296 GQLYRFPDLARRNLRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRA 355
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R++ +SF VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P
Sbjct: 356 RMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPIA 415
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG KFDP+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R
Sbjct: 416 QGKKFDPDGAYVRRWVPELAGLPANAIHEPWAAPAARLAAAGVRLGDTYPLPIVAHDAAR 475
Query: 475 ERLTQA 480
+R A
Sbjct: 476 KRALDA 481
>gi|374576149|ref|ZP_09649245.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. WSM471]
gi|374424470|gb|EHR04003.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. WSM471]
Length = 495
Score = 285 bits (728), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 177/481 (36%), Positives = 252/481 (52%), Gaps = 11/481 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCP---KEEGQFYPGRVSRWWLKQSLSYLG 63
IVWFR DLR+ D+PAL AAA+ + C + G +RWWL QSL LG
Sbjct: 20 IVWFRDDLRLSDHPALHAAAKVAAKTGAPVICLYVLDDAAGRTAGAAARWWLAQSLRALG 79
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + G L+L K + + E V +N + + ++ L +LG+
Sbjct: 80 ADIATRGGSLILRKGPAA-RVITEVARESGGRAVYWNGIAQAPHQAVERQLEAALAKLGV 138
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
S+ GDLL P I ++ G F +W + L + P + P L A G +
Sbjct: 139 DSHSFPGDLLVPPAAIRNKEGRGLRVFTPFWRRVLALGDPPKPLPAPKELRPAPG-VASD 197
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++ LE + L W+PG ++A L +F++ Y +R + TS L
Sbjct: 198 PLDTWKLEPGKPDWAGGLR-ETWTPGEASARARLRDFLKHTASGYVGDRDRPDREGTSHL 256
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L FGELS R+V+ +A EN V FL +G RE+ R+L + P
Sbjct: 257 SPHLSFGELSPRQVWHA-----ARFAAAENPAIGPGVDKFLSELGWREFCRHLLHDHPNL 311
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
L +N FPW D AW++GRTGYP+VDAG+RELW TG +HNR+R++V+SF V
Sbjct: 312 ATENLQANFDGFPWKPDAKALAAWQRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLV 371
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P +QG KFDP+G
Sbjct: 372 KHLLIDWRDGESWFWDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPVLQGEKFDPDG 431
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
YVR+W+PEL +P + IH PW A P L +AGV LG +YP+PI+D GR R A K
Sbjct: 432 AYVRRWVPELRDVPAKLIHQPWRATPIELASAGVTLGKSYPQPIVDHAKGRARALAAYAK 491
Query: 484 M 484
+
Sbjct: 492 I 492
>gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
Length = 497
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 251/477 (52%), Gaps = 19/477 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+VW R DLR+ DNPAL AA+ G V +Y + G++ G+ S WWL SL L
Sbjct: 4 TVVWLRYDLRLIDNPALFHAAKRGHVVIIYILDQETPGKWKLGKASLWWLHHSLKSLQND 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L L+L + L L + + +A V +N Y+P ++ RD SI+E L ++V
Sbjct: 64 LLKFNIPLILRRGADPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEEALKVDDVTV 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID---- 181
S+ LLYEPW + + F + YW++CL +P P+ + T+D
Sbjct: 124 GSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSD-QPRK---PYDKPRFNNTLDIKVQ 179
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+++ L + + L PG A + L EF++ L+ Y K ++ + + TS
Sbjct: 180 TDTLDSWHLVSAKKDWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDYRKGKETVWPSKTS 239
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEE---NFEGKESVTFFLRAMGLREYSRYLCF 298
LS +LHFGE+S V+ AKE +S FL +G R++ +L
Sbjct: 240 QLSTHLHFGEISPFVVWHT--------AKESVHLRSVPSDSSQKFLTELGWRDFCFHLLH 291
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P E+ N W D K W+QG+TGYP+VDAGMREL TG I R+R IV
Sbjct: 292 YYPDFPEKSYKLNFDETIWKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIV 351
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K LL+PW+ G ++FWDTL+DADL + WQ I+G D + +P QG +
Sbjct: 352 ASFLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIINPVTQGER 411
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
FD +G YVR+W+PE+A++ ++I PW+AP VLK AG+ LG YPK I++ R+
Sbjct: 412 FDSDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKARD 468
>gi|424890665|ref|ZP_18314264.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393172883|gb|EJC72928.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 482
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 247/480 (51%), Gaps = 19/480 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DN ALAAA G + P+Y P G WWL SL L
Sbjct: 9 VILWFRKDLRLDDNHALAAADLSGRPIIPLYIKEPAAHSGAL-GAAQAWWLHHSLEALDG 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LVL E+ L L IS A V +N YDP D IK +L + I
Sbjct: 68 SLRKRQGRLVLASGEA-LDVLGALISESGAEAVFWNRCYDPSGTAIDIRIKHELQKQAIE 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGC 183
+S+ G LLY+P + G + + +W + L+ EP + P +L AA
Sbjct: 127 ARSFGGQLLYDPSRLMTGGGTPYRVYTPFW-RALEGAGEPERPVEAPAKLRLAAQLPKSE 185
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+E L + G W+PG A + L FVE L Y +NR +TSLL
Sbjct: 186 RLESWKLLPTKPDWARDF-GDLWTPGEQGAREKLRSFVEDGLDGYKENRDYPAKQATSLL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK---ESVTFFLRAMGLREYSRYLCFNF 300
SP+L GE+S ++ W + + F + + RE+S +L F+F
Sbjct: 245 SPHLALGEISPARI----------WDATRGLSKRMPAADILHFRKEIAWREFSYHLLFHF 294
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + F W D +F AWR+G TGYP+VDAGMR+LW GW+HNR+R+IV+S
Sbjct: 295 PRLASDNWNARFDGFKWRNDDDDFAAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVAS 354
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG FD
Sbjct: 355 FLIKDLMVDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGQTFD 414
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+YVR +LPEL + +IH P++AP +VL +AG+ LG YP+PI+D R R A
Sbjct: 415 PRGDYVRTYLPELRELAANYIHRPFEAPESVLDSAGIILGQTYPRPIVDHASARNRALAA 474
>gi|389783153|ref|ZP_10194647.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
gi|388435091|gb|EIL92009.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
Length = 469
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 253/477 (53%), Gaps = 19/477 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+V FRRDLR+ DNPA +AA A V PV+ E G SRWWL +L L +
Sbjct: 4 ALVLFRRDLRLADNPAWSAACAEHAHVLPVFIHADDEACP--AGSASRWWLHHALRALDR 61
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ GA L L + E L L E I A V +N LY+P ++ RD +K L + GI+
Sbjct: 62 DLRDAGAALHLRRGE-LLDVLRELIRRSGAVAVYWNRLYEPAAISRDTQLKSALRQDGIA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+N L EPW I +G + F YW K L+ +++ + LP R+ DG
Sbjct: 121 VHSHNAALWCEPWRIATGQGQPYKVFTPYWRK-LRPELQAVAPLPAPRVPGWRELPDGLP 179
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E L L + + L W PG + A ++L F + + Y + R + TS LS
Sbjct: 180 LEALELLPRIDWAGG--LRAHWQPGQAGARELLEIFADDAINDYARARDLPARHGTSRLS 237
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R++ L + A + + + FLR +G RE++ +L F+FP+T
Sbjct: 238 PHLHFGEISPRQIHFELDRR----AGAIDTRRRPDLEPFLRELGWREFAHHLLFHFPYTP 293
Query: 305 ERPLLSNLKYFPWHAD-LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
F W AD + W++GRTG PLVDAGMRELW TGW+HNR+R+IV+SF
Sbjct: 294 TENFNPRFNEFAWAADDEVAIERWQRGRTGIPLVDAGMRELWHTGWMHNRVRMIVASFLT 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W G ++F DTL+DADL + LGWQ+++G D R+ +P Q KFDP+G
Sbjct: 354 KNLRQHWLHGARWFHDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPLTQAKKFDPDG 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+R WLPEL P +H PW K A + YP P++DL R++ A
Sbjct: 414 AYLRHWLPELGDAPVALLHEPW-------KDAALLRRSGYPAPMVDLGQSRQQALGA 463
>gi|409400169|ref|ZP_11250320.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
gi|409130775|gb|EKN00515.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
Length = 467
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 254/483 (52%), Gaps = 30/483 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+VWFR DLR+ DNPAL AAA G V +Y + G SRWWL SLS LG +
Sbjct: 4 LVWFRNDLRLADNPALHAAAAAGDVILLYILDERAGG------ASRWWLHHSLSALGAEI 57
Query: 67 KSLGAELVLFKTESTLAALLECISA-IKATKVVFNHL---YDPVSLVRDHSIKEKLVELG 122
+ G LVL + ++T E I+ +KA KV H+ Y+P D ++ L L
Sbjct: 58 AARGGRLVLRRGDAT-----EIITGLVKAHKVAAVHVARAYEPAWREADRALDAALKRLD 112
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTID 181
+ + L+ P I + G + + + C + + P ++LP P L+ I+
Sbjct: 113 CGLHRHLSTSLFHPERITTKAGGMYGVYTPFSKACQEAGV-PETLLPVPSALLGP--KIE 169
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+ D GL + + W+PG + A L F+ + Y R G + TS
Sbjct: 170 SEDLADWGLLPIRPDWAGGMRAE-WTPGEAGAKARLEAFLAGPVQDYATARDIPGRHGTS 228
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+ HFGE+S R V W + E V FL+ + RE+S L + P
Sbjct: 229 KLSPHAHFGEISPRYV----------WHRARAAGAGEGVETFLKELLWREFSINLLWQHP 278
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
P+ K FPW + AW+ G+TG P+VDAGMRELW TGW+HNR+R+I +S+
Sbjct: 279 DLRREPIRREFKDFPWETNRDRLTAWQTGKTGIPIVDAGMRELWITGWMHNRVRMICASY 338
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+PW+ G +FWDTL +AD + WQ+++G D R+ +P +QG KFD
Sbjct: 339 LVKHLLIPWQAGEAWFWDTLCEADEAANGASWQWVAGCGADAAPYFRVFNPVLQGQKFDG 398
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+G YVR++LP L R+P ++IH PW+APP +L A GV+LG NYP+P++ GR++ A
Sbjct: 399 DGAYVRRFLPALKRLPDKYIHAPWEAPPEILAACGVKLGSNYPQPLVKPAEGRDKALAAY 458
Query: 482 FKM 484
++
Sbjct: 459 ARL 461
>gi|449017555|dbj|BAM80957.1| probable cryptochrome [Cyanidioschyzon merolae strain 10D]
Length = 1225
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 181/522 (34%), Positives = 268/522 (51%), Gaps = 72/522 (13%)
Query: 6 TIVWFR-RDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
++VW+R DLR+ED PAL AA R G V PV+ W P+E+G + GR +RWWL +S+ L
Sbjct: 8 SVVWYRGHDLRVEDMPALLAAVQRGGPVVPVFIWAPEEDGMWCLGRPARWWLSRSIVALD 67
Query: 64 QSLKSLGAELVLF----KTESTL-----AALLECISAIKATKVVFNHLYDPVSLVRDHSI 114
+ L+ LG E L K+ES LLE + A V +N +YDPV L RD +
Sbjct: 68 RRLRELGCETGLILRRAKSESGGGGGVETTLLEVVKRCGAEAVYWNRVYDPVVLRRDEEV 127
Query: 115 KEKLVELG-ISVQSYNGDLLYEPWEI--YDERGHAF-----TTFDAYWDKCLQMQME--- 163
+ + + ++V+S+ +LL EPWE+ + R +F TF + + M
Sbjct: 128 RRRWSKHHRLAVESFKAELLVEPWEVCATESRPASFGDRPLDTFHEFMSAWMAMPPPPEP 187
Query: 164 ------------------------PASILPPWRLVQAAGTIDGCS--------IEDLGLE 191
P S + P ++Q+ G D + I +LG
Sbjct: 188 LPAPKRIEPLIASQSGDQGPLFAVPESTMQPSDVLQSPGGEDTDTEMGIWWNQIHNLGSL 247
Query: 192 DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRY--YKNRQKLGGNSTSLLSPYLHF 249
+E W PG + L +F+ Y + RQ+L N TS LSPYL F
Sbjct: 248 EEY-----------WRPGVDCVAERLQDFLTSVFPTYGDARRRQRLR-NGTSRLSPYLRF 295
Query: 250 GELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309
GELS R+++ + + + E + + LR + LREY+ ++ F P +RPL+
Sbjct: 296 GELSPRRLYHAV--RASVLQSEPSDAIIRAARTLLRNLCLREYAYHMLFYRPSILDRPLV 353
Query: 310 SNLKYFPW-HADLGNF-KAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLL 367
+FP D+G + W GRTGYPLVDA MREL TGW+H+ +R +V+SF K LL
Sbjct: 354 PEFDHFPCTKEDVGRLLEVWLSGRTGYPLVDAAMRELHHTGWLHSNLRFLVASFFTKYLL 413
Query: 368 LPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVR 427
LPW+ G + + +D DL + + WQ+++G D L L +P + G + DPEGEYVR
Sbjct: 414 LPWQIGARCLFKLFIDGDLASNAICWQWVTGCNYDVFPLNCLVNPVVMGMRVDPEGEYVR 473
Query: 428 QWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
W PEL ++P+ +IH W PP +L A VELG+ YP+P+++
Sbjct: 474 TWCPELQQIPSSYIHAVWKCPPTILHQARVELGVTYPRPVVE 515
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 252/478 (52%), Gaps = 14/478 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DN AL AA R G + P+Y P G G WWL SL L +
Sbjct: 9 VILWFRKDLRLDDNQALTAAHRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLHHSLEALNR 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LVL E+ L L I A V +N YDP + D IK +L + I
Sbjct: 69 SLQKRHGRLVLASGEA-LEVLRAFIKESGAEAVFWNRRYDPAGISIDARIKHELEKQAIE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASIL-PPWRLVQAAGTIDGC 183
+S+ G LL+EP + G + + +W + L+ EP L P L +
Sbjct: 128 ARSFGGQLLHEPSRLMTGNGTPYRVYTPFW-RALEGGDEPEPPLEAPAELRLTSQLPTSE 186
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++E L + + W+PG A + L FVE L Y +NR +TS+L
Sbjct: 187 TLESWKLLPTKPDWAGDFVDL-WTPGEEGAQQRLHAFVEDALEGYKENRDYPARPATSML 245
Query: 244 SPYLHFGELSVRKVFQCL-WMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
SP+L GE+S +++ + Q + A + + F + + RE+S +L F+FP
Sbjct: 246 SPHLALGEISPARIWDATRGLSQRVPAAD--------IVHFRKEIAWREFSYHLLFHFPR 297
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
W D +F+AWR+G TGYP+VDAGMR+LW GW+HNR+R+IV+SF
Sbjct: 298 LASANWNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFL 357
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG KFDP
Sbjct: 358 IKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPN 417
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+YV+ ++PEL + ++IH P++AP ++L AG+ LG YP+PI+D R R A
Sbjct: 418 GDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNRALAA 475
>gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 186
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/186 (72%), Positives = 161/186 (86%)
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHHPW+A
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PPNVLK 453
P +VL+
Sbjct: 181 PESVLQ 186
>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
Length = 484
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/468 (36%), Positives = 253/468 (54%), Gaps = 18/468 (3%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ +VW R DLRI DNPAL AAA G + VY E + PG RWWL QSL +
Sbjct: 19 HHALVWLRNDLRINDNPALDAAAETGGHITAVYVHETVAEIR-APGCAVRWWLDQSLEAI 77
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ L G EL L +T L + I+ + T++ +N Y P D ++K +L E G
Sbjct: 78 RKQLADRGIEL-LIETGDPRDILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLKESG 136
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
V S+ G+LL EPWE+ + F + K L+ P + R T +
Sbjct: 137 TGVTSFPGNLLLEPWELKTASDTPYQVFTPF-AKALRHHHIPRPLSR--RQWDIKPTQET 193
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
C ++ K + L W+ G A LT F+E L Y ++R G + TS
Sbjct: 194 CYSPNV---PAWAKKFDGL----WNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDGTSR 246
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+L FGE+S R+ + L +E+ + FL + R+++ + ++
Sbjct: 247 LSPHLRFGEISARQAWYA-----TLAFMDEHHSARAGGEKFLSELIWRDFNYHQLYHRRD 301
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ L W D F+AWR+G+TG+P++DAGMR+LWATGW+HNR+R++V+SF
Sbjct: 302 ISRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFL 361
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K LL+ WR G ++FWDTL+D D+ + WQ+++G D R+ +P +QG KFD E
Sbjct: 362 TKNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAE 421
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
G+YVR W+PEL+ + +W+H P++AP +VL +AG+ LG YPKPIIDL
Sbjct: 422 GQYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDL 469
>gi|402487390|ref|ZP_10834210.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
gi|401813716|gb|EJT06058.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
Length = 483
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 250/484 (51%), Gaps = 18/484 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DN A+ AA R G + P+Y P+ G G WWL SL L +
Sbjct: 9 VILWFRKDLRLDDNQAVDAAHRSGRPIIPLYLREPEAAGTGALGAAQAWWLHHSLKALDE 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LVL + L L I A V +N YDP + D IK +L + I
Sbjct: 69 SLRKRQGRLVL-SSGGALEVLCALIRESGAEAVFWNRRYDPSGISIDSRIKHELEQQAIE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGC 183
+S+ G LL+EP + G + + +W + L+ EP + P +L+ A+
Sbjct: 128 ARSFGGQLLHEPSLLMTGSGTPYRVYTPFW-RALEGAGEPGRPVEAPAKLLLASQLPKSE 186
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+E L ++ W+PG A + L FVE L Y +NR +TS+L
Sbjct: 187 KLESWNLL-PTKPDWAGDFADLWTPGEEGAQEKLGVFVEDALDGYKQNRDYPAKPATSML 245
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK---ESVTFFLRAMGLREYSRYLCFNF 300
SP+L GE+S ++ W + + F + + RE+S +L F+F
Sbjct: 246 SPHLALGEISPARI----------WDATRGLSSRVPATDIVHFRKEIAWREFSYHLLFHF 295
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P F W D +FKAW +G TGYP+VDAGMR+LW GW+HNR+R+IV S
Sbjct: 296 PRLASANWNDRFDGFEWRNDGDDFKAWCRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVGS 355
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG FD
Sbjct: 356 FLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGETFD 415
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G+YVR +PEL R+ ++IH P++AP +VL AG+ LG YPKPI+D R R A
Sbjct: 416 PDGDYVRAHVPELQRLGAKYIHRPFEAPKSVLDEAGITLGQTYPKPIVDHKSARNRALAA 475
Query: 481 IFKM 484
M
Sbjct: 476 YNAM 479
>gi|389796932|ref|ZP_10199978.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 116-2]
gi|388448025|gb|EIM04016.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 116-2]
Length = 470
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 261/479 (54%), Gaps = 22/479 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+V FRRDLR+ DNPA +AA A V PV+ +EG + G SRWWL SL+ L +
Sbjct: 4 ALVLFRRDLRLADNPAWSAACAEHAQVLPVFI-HSGDEGLWSAGAASRWWLHHSLAALAR 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L GA L L + E L L I++ A V +N LY+P ++ RD IK L GI+
Sbjct: 63 QLHDAGAGLHLRRGEP-LDILRALIASSGARAVYWNRLYEPAAIARDTRIKSALRADGIA 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+N L EPW I ++ + F YW + L+ Q++P LP + DG
Sbjct: 122 VHSHNAALWCEPWAIATQQAAPYKVFTPYW-RNLRPQLQPVEPLPAPHVPGWHELPDGLP 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L L + L W PG + A ++L F + + Y R + TS LS
Sbjct: 181 LAALELLPRIAWAGG--LAARWQPGEAGARELLEIFGDDAIGDYAHARDLPARHGTSRLS 238
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT- 303
P+LHFGE+S R++ L + + + + + +LR +G RE++ +L ++FP T
Sbjct: 239 PHLHFGEISPRQIQFELDRRA----RATDARRRPDLEPYLRELGWREFAHHLLYHFPHTP 294
Query: 304 --HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ P ++ ++ P AD + W++GRTG PLVDAGMRELW TGW+HNR+R+IV+SF
Sbjct: 295 TGNFNPRFNDFRWAP--ADHALLERWQRGRTGIPLVDAGMRELWRTGWMHNRVRMIVASF 352
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K L W+ G ++FWDTL+DADL + LGWQ+++G D R+ +P Q KFDP
Sbjct: 353 LTKHLRQHWQHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPVTQAKKFDP 412
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+G Y+R+WLPELA P +H PW + AG+ YP P+++L R++ A
Sbjct: 413 DGIYLRRWLPELAEAPLALLHEPW-------RDAGLLERSRYPAPMVELGQSRQQALDA 464
>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|385793100|ref|YP_005826076.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
Length = 464
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 257/479 (53%), Gaps = 21/479 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ ++ G S+ WL SL+
Sbjct: 1 MSKKIAIHWFRQDLRLADNPALYQASQADETITIFILDKNQD----IGSASKLWLHHSLN 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL + + F + + L + + I T +N YD S+ RD IK+ L +
Sbjct: 57 SLNSSLDNK----LNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQ 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I+V S+NG LL EPW+ + G + + ++ + ++++ ++I P
Sbjct: 113 HKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKP-NFSYLRKLN 171
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ +++ L L N + + W G S + ++L EF++ + Y R + +ST
Sbjct: 172 NSENLDSLKLLQPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDST 229
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYLHFGE+S ++F + + EE+F ++ + R++S Y + +
Sbjct: 230 SKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQIYYY 280
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P H + + F W D K W++G+TG P+VDAGMRELW TG++HNR+R+IV+S
Sbjct: 281 PELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVAS 340
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q KF+
Sbjct: 341 FLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFE 400
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
EY+R+++PEL +P + I PW+A VLK AG+ LG NYPKPI+DL R+R Q
Sbjct: 401 AY-EYIRKYVPELKLLPNKLIAKPWEASELVLKEAGITLGQNYPKPIVDLKKSRDRALQ 458
>gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
Length = 500
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 179/492 (36%), Positives = 248/492 (50%), Gaps = 10/492 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D PAL A G + VY E G +RWWL SL+ L
Sbjct: 10 AVVWFRDDLRVTDQPALMRAVASGRPLVCVYVDDTGEGAGRALGGAARWWLHGSLATLDA 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G+
Sbjct: 70 ALARHGGRLLLLRGDARRE-IERVVHDTGAAAVYWNRRYAQPQRDADAALKASLKAHGLE 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV----QAAGTI 180
V+S NG LL EPWE+ G F F AYW + + A + P R+ A
Sbjct: 129 VESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVAAPLPAPERIAFHPWPAGVRE 188
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ L L + + L +P + A L FV L Y R + G +T
Sbjct: 189 RALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASLAGYADTRDRPGEPAT 248
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FG +S R+V W A+ FL +G RE+S L ++F
Sbjct: 249 SRLSPFLRFGNVSPRQV----WHAVQGVAQAGGAACAAGAEKFLSELGWREFSHVLLYHF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + PW D +AW++G TGYPLVDAGMRELW TGW+HNR+R++V+S
Sbjct: 305 PALATDNFRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRVRMVVAS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G ++F DTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 365 FLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVAQGRKFD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA + IH PW+A L AAGV LGL+YP PI+D D R R A
Sbjct: 425 PQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHDGARRRALDA 484
Query: 481 IFKMWEMEAADN 492
+ + + AA +
Sbjct: 485 LATLPKPSAAGH 496
>gi|416907322|ref|ZP_11931049.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49]
gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49]
Length = 452
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/446 (35%), Positives = 229/446 (51%), Gaps = 17/446 (3%)
Query: 48 GRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVS 107
G +WWL +SL L SL +LG L++ + A+ +A V +N Y
Sbjct: 2 GGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH-EAIRSLAVETRAAMVFWNRRYSKAQ 60
Query: 108 LVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI 167
D SIK+ L+ GI V ++NG LL EPW + G F F AYW + P
Sbjct: 61 TEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNFFPPCP 120
Query: 168 LP-PWRL----VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVE 222
LP P R+ V + ++ +L L+ + + L W G A L F+E
Sbjct: 121 LPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRA-TWRCGEEAAGHQLEAFIE 179
Query: 223 QHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVF-------QCLWMKQILWAKEENFE 275
Y R +TS LSPYL FG +S R+V+ + ++++ +
Sbjct: 180 NSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVVRIDDAK-- 237
Query: 276 GKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYP 335
ES+ F +G RE+S YL ++ H+ PW D +AW++G+TGYP
Sbjct: 238 -NESLNKFFSELGWREFSYYLLYHCEPLHQFNFRRQFDAMPWRTDAKALRAWQRGKTGYP 296
Query: 336 LVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQY 395
LVDAGMRELW TGW+HNR+R++ +SF K LL+ WR G +FWDTL+DAD + GWQ+
Sbjct: 297 LVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAGWQW 356
Query: 396 ISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAA 455
+SGS D R+ +P +QG KFD GEY R+W+PEL+ +P E +H PW A L+ A
Sbjct: 357 VSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSPWTASAEALREA 416
Query: 456 GVELGLNYPKPIIDLDLGRERLTQAI 481
+ LG +YP PI+D + R R ++
Sbjct: 417 SIALGASYPFPIVDHQVARARALSSV 442
>gi|430003702|emb|CCF19491.1| Deoxyribodipyrimidine photo-lyase [Rhizobium sp.]
Length = 476
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 254/477 (53%), Gaps = 15/477 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+ DN AL+AA G+ V ++ G G WWL SL L Q
Sbjct: 8 VIVWFRRDLRLADNAALSAAVETGAPVIALFIREGSAGGGMPFGAAQAWWLHHSLLALRQ 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G +L+ F E+ L++ A ++ N Y+ RD I +L GI+
Sbjct: 68 ALHDRGGDLLFFTGEAA-TVLVQVAQQTGANQIYLNRSYERDDQDRD--IARRLKAEGIA 124
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGC 183
V +++G LL++P I G F F +W K LQ EP L P + A+ T
Sbjct: 125 VHAFHGQLLHDPSHIRTGGGKPFRVFTPFW-KALQALGEPREPLAAPDAMRGASSTPPSE 183
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ED GL ++ A G W+PG + A L +FVE L Y R + TS L
Sbjct: 184 QLEDWGLL-PTKPDWAAGFGETWTPGEAGARFRLEDFVEHGLREYKSVRDFPARDLTSHL 242
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L GE++ + + A + +T F R + R+++ L FP
Sbjct: 243 SPHLAHGEVTPAQAWHA--------ASGLDNGDPAQITHFRRELAWRDFNYSLLIEFPRL 294
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ F W D ++AWR+G TGYP+VDAGMR+LW G++HNR+R+I +SF +
Sbjct: 295 ATDNWNTAFDGFAWSFDGALYRAWRKGLTGYPIVDAGMRQLWREGYMHNRVRMITASFLI 354
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + WR G ++F +TLLDAD + WQ+++GS D R+ +P +QG KFDP+G
Sbjct: 355 KDLTIDWRKGEEWFRETLLDADPANNAASWQWVAGSGADASPFFRIFNPTLQGEKFDPDG 414
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+YVR+++PEL+ + ++IH P++AP ++L+ AG+ LG +YP+PI+D RER A
Sbjct: 415 DYVRRYVPELSHLDKKYIHRPFEAPDHILQKAGIRLGESYPRPIVDHGSARERALAA 471
>gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
Length = 465
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/486 (34%), Positives = 240/486 (49%), Gaps = 42/486 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TI+WFR DLR+ DNPAL+ AA G V +Y + PG +RWWL +L+ L
Sbjct: 7 TIMWFRDDLRLADNPALSDAAASGPVICLYV----HDPALAPGSAARWWLHGALTALEDD 62
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ G L + + +L A VV+N Y + D IK L ++G+
Sbjct: 63 LRARGGRLCIMAGPA-WQCVLRLARQAGAGAVVWNRRYGGAARQVDARIKLALKDMGVQA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA----------SILPPWRLVQ 175
+S+ G++L+EPW++ +G F + +W M + LPP
Sbjct: 122 RSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGFAALPP----- 176
Query: 176 AAGTIDG-CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
DG S+ LGL+ + L W PG A L F+ L Y + R
Sbjct: 177 --AVEDGLVSLSALGLQPTRPDWAQGLRDT-WQPGEQAAHARLATFMATRLPGYARLRDL 233
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+TS LSP L FG +S R+++ A E + FL +G R+++
Sbjct: 234 PARPATSGLSPCLRFGHISPRQIWH---------AVEAQGDVDADGMCFLSEVGWRDFAH 284
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
F+ P R L PW D +AW+QGRTGYP+VDAGMRELW TGW+HNR+
Sbjct: 285 ATLFDCPDMATRSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMHNRV 344
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K LLL WR G ++F DTL+DAD + WQ+++G D R+ +P +
Sbjct: 345 RMIVASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVL 404
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG KFDPEG+YVR+W+PE+A + +H PW P + YP P++DL GR
Sbjct: 405 QGEKFDPEGDYVRRWVPEIAHLAGRAVHTPWKFP---------HVHRGYPAPVVDLADGR 455
Query: 475 ERLTQA 480
R A
Sbjct: 456 ARALAA 461
>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTE]
gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
tularensis subsp. novicida FTE]
gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
Length = 464
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 257/479 (53%), Gaps = 21/479 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ ++ G S+ WL SL+
Sbjct: 1 MSKKIAIHWFRQDLRLADNPALYQASQADETITIFILDKNQD----IGSASKLWLHHSLN 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL + + F + + L + + I T +N YD S+ RD IK+ L +
Sbjct: 57 SLNSSLDNK----LNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQ 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I+V S+NG LL EPW+ + G + + ++ + ++++ ++I P
Sbjct: 113 HKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKP-NFSYLRKLN 171
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ +++ L L + N + + W G S + ++L EF+ + Y R + +ST
Sbjct: 172 NSENLDSLKLLEPKHSWQNII--KQWQIGESASHQILEEFLNNKVKEYKTARDFMSTDST 229
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYLHFGE+S ++F + + EE+F ++ + R++S Y + +
Sbjct: 230 SKLSPYLHFGEISPSQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQIYYY 280
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P H + + F W D K W++G+TG P+VDAGMRELW TG++HNR+R+IV+S
Sbjct: 281 PELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVAS 340
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q KF+
Sbjct: 341 FLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFE 400
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
EY+R+++PEL +P + I PW+A VL+ AG+ LG NYPKPI+DL R+R Q
Sbjct: 401 AY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQ 458
>gi|408823943|ref|ZP_11208833.1| deoxyribodipyrimidine photo-lyase [Pseudomonas geniculata N1]
Length = 471
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 172/468 (36%), Positives = 250/468 (53%), Gaps = 20/468 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DNPAL AA G V PVY P EEG + PG S W +SL+ L
Sbjct: 4 ALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGGWAPGAASDAWRHRSLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL ++ +L AL I A V +N Y+P + RD +IK L E GI
Sbjct: 64 DLRTRGSSLVL-RSGDSLPALQLLIEQTDAGAVYWNRKYEPATQPRDATIKRMLREQGID 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
QS NG LL+EPW+I ++G + F YW L P+ L AA +D +
Sbjct: 123 AQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPS--LQAAPKALAAHAVDSLA 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++DL L + + W PG + A + L+ F + L Y + R TS LS
Sbjct: 181 LDDLQLAPTLDWDTG--FWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRLS 238
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ ++ L + + +LR +G R+++ +L +FP T
Sbjct: 239 PHLHFGEIAPWRIAHAL-------EGLRSAGTDADIDGYLRQLGWRDFAYHLLHHFPKTP 291
Query: 305 ERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
L FPW W++G TG P+VDAG+RELW TG++HNR+R+IV+S+
Sbjct: 292 TDNLNPRFDRFPWATPSDAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLC 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W G ++FWDTL+DADL + +GWQ+++G+ D R+ +P Q KFDP+
Sbjct: 352 KHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDL 470
Y+ +W+PELA +P + PW P +L A YP+ P++DL
Sbjct: 412 RYISRWVPELAALPVKARFAPWQH-PQLLAAHAP----GYPRTPLVDL 454
>gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549]
Length = 464
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 258/479 (53%), Gaps = 21/479 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ K +G G S+ WL SL+
Sbjct: 1 MSKKIAIHWFRQDLRLADNPALYQASQADETITIFI-LDKNQG---IGGASKLWLHYSLN 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL + + F + + L + + I T +N YD S+ RD IK+ L +
Sbjct: 57 SLNSSLDNK----LNFYSGNPLEIIRKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQ 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I+V S+NG LL EPW+ + G + + ++ + ++++ ++I P
Sbjct: 113 HKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKP-NFSYLRKLN 171
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ +++ L L N + + W G S + ++L EF++ + Y R + +ST
Sbjct: 172 NSENLDSLKLLQPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDST 229
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYLHFGE+S ++F + + EE+F ++ + R++S Y + +
Sbjct: 230 SKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQIYYY 280
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P H + + F W D K W++G+TG P+VDAGMRELW TG++HNR+R+IV+S
Sbjct: 281 PELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVAS 340
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q KF+
Sbjct: 341 FLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFE 400
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
EY+R+++PEL +P + I PW+A VL+ AG+ LG NYPKPI+DL R+R Q
Sbjct: 401 AY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQ 458
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/479 (35%), Positives = 264/479 (55%), Gaps = 21/479 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFR+DLR+ DN AL AA G V P+Y +E+ G WWL SL+ L +
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPLYI---QEKSSGPLGGAQEWWLHHSLASLTVA 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G+ L+L ++ L IS A + +N YDP + D ++K+ L + G++V
Sbjct: 66 LEETGSRLLL-RSGDAEETLRHVISETGADTIFWNRRYDPAGMATDKALKQALSDDGLTV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPPWRLVQAAGTIDGCS 184
+S+ G LL+EP + + G + + +W + L+ EP A P L
Sbjct: 125 RSFAGHLLHEPSRVQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPKSLKSPETWPKSQK 183
Query: 185 IED---LGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++D L ++ + + + + W+PG + A + L +F++ L Y + R ++TS
Sbjct: 184 LDDWKLLPVKPDWARDFSEI----WTPGENAAREKLDDFIDGALKGYEEGRDFPAKDATS 239
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
+L+P+L GE+S V+ K + ++ F + + RE+ +L F+FP
Sbjct: 240 MLAPHLALGEISPAAVWHA--TKGL-----SRHIASNDISRFRKELVWREFCYHLLFHFP 292
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
E+ + F W D +FKAW +G TGYP+VDAGMR+LW G +HNR+R+IV+SF
Sbjct: 293 KLDEKNWNESFDAFGWRQDEKSFKAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVASF 352
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P +QG KFD
Sbjct: 353 LIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDG 412
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+G+YVR+++PEL ++ ++IH P+ AP +L AG+ELG YP+PI+D RER A
Sbjct: 413 DGDYVRRFVPELEKLDRKFIHKPFQAPRELLNKAGIELGKTYPQPIVDHTKARERALAA 471
>gi|388250769|gb|AFK23500.1| cryptochrome 2 apoprotein-like protein, partial [Sorghum bicolor]
Length = 184
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/182 (73%), Positives = 158/182 (86%)
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
SRYL FN P +HERPLL++L++FPW + FK WRQGRTGYPLVDAGMRELWATGW+H+
Sbjct: 2 SRYLSFNHPSSHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHD 61
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+GSLPD EL+R+D+P
Sbjct: 62 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNP 121
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
+ +G KFDP GEYVR+W+PEL R+PTEWIHHPWDAP +VL+AAG+ELG NYP PI++LD
Sbjct: 122 QFEGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDA 181
Query: 473 GR 474
+
Sbjct: 182 AK 183
>gi|381394101|ref|ZP_09919819.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330373|dbj|GAB54952.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 469
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/479 (35%), Positives = 251/479 (52%), Gaps = 21/479 (4%)
Query: 8 VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLK 67
+WFR+DLR++DNPAL AA+ V PVY + G S+WWL +L L +SL
Sbjct: 1 MWFRQDLRVKDNPALIKAAKQSKVLPVYIYDTSVPQNAVLGGASKWWLHHALVALQESLD 60
Query: 68 SLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQS 127
G LVL + LL + + V +N +Y+P ++ RD +IK+ L S
Sbjct: 61 --GNLLVLSGDPQEI--LLSLCTQHNISSVHWNRMYEPWAIARDTAIKKALKASECDALS 116
Query: 128 YNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP--ASILPPWRLVQAAGTIDGC-S 184
NG LL+EP ++ + + F Y+ +P PP + + G
Sbjct: 117 TNGSLLWEPMQVLKKDETPYKVFTPYYKNGCLNAPDPRYPQRKPPLSFMDDMDEVKGYQG 176
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L L + + + W+ A L F++Q + Y +R TS LS
Sbjct: 177 VDSLALLPRV--NWDLHMQEMWNVSEQGAQCKLEYFIKQAIEEYNDDRNVPSVAGTSQLS 234
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEG---KESVTFFLRAMGLREYSRYLCFNFP 301
PY HFG +S Q +A + F G + V +L +G RE+S YL F+F
Sbjct: 235 PYFHFGLISPN---------QAWYAVHDAFNGSRENKGVYVYLSELGWREFSYYLLFHFN 285
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
R + FPW D +AW+QG+TG P+VDAGMREL+ TG++HNR+R+IV+S+
Sbjct: 286 DIQNRNFNTKFDNFPWVQDKEGLRAWQQGKTGVPIVDAGMRELYQTGYMHNRVRMIVASY 345
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+ WR G ++FWD LLDAD + GWQ+++GS D R+ +P +QG KFD
Sbjct: 346 LVKNLLIDWREGERWFWDCLLDADSASNSAGWQWVAGSGADASPYFRIFNPILQGEKFDK 405
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
EG YV+++ PEL+++ +++H PW+A L +A + LG +YPKPI+DL R R A
Sbjct: 406 EGAYVKKYCPELSKLGKKFLHKPWEASEQELLSANIVLGKDYPKPIVDLKKSRVRALDA 464
>gi|440731048|ref|ZP_20911095.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
gi|440375449|gb|ELQ12158.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
Length = 473
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 258/474 (54%), Gaps = 30/474 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+ D+PAL AA G PVY P +EG + G S WL+++L+ L
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWSAGAASLSWLQRALAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ L+L + + L E I A A V +N Y+P + RD +K +L E G+
Sbjct: 64 QLQARGSRLILRQGPAE-TVLRELIQACGAVAVYWNRRYEPATQPRDAKLKRELREQGLD 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V SYN LL+EPW++ ++G + F +W L PA P L +
Sbjct: 123 VHSYNSALLFEPWQLATQQGGPYKVFTPFWRSALSHWQVPALRPAPKTLPPPPPALPSLP 182
Query: 185 IEDLGLEDESEKSSNALLG--RG----WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
++ LGL LG RG W PG + A + L FV+ L Y + R +
Sbjct: 183 LQQLGLAPA--------LGWDRGFWEVWQPGEAGAHEALEVFVDGALRGYVEGRDRPDQV 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSP+LHFGE++ ++ L K+ + ++ ++R +G R+++ +L
Sbjct: 235 GTSRLSPHLHFGEIAPWRIVAAL-------EKQRSAATGAAIDGYIRQLGWRDFAHHLLH 287
Query: 299 NFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+FP T E L F W D +AW++GRTG P+VDAG+RELW TGW+HNR+R+I
Sbjct: 288 HFPATPEHNLNPRFARFRWATPDPAQLQAWQRGRTGVPIVDAGLRELWHTGWMHNRVRMI 347
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+S+ K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q
Sbjct: 348 VASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQ 407
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDL 470
KFDP+G Y+ +W+PELA +P PW +P + +A +YP+ PI+DL
Sbjct: 408 KFDPQGRYIARWVPELAALPVAERFAPWLSPQRLATSAP-----HYPRQPIVDL 456
>gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
Length = 477
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 178/483 (36%), Positives = 263/483 (54%), Gaps = 37/483 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++W R+DLR D+PAL A A V PV+ E + PG +RWWL SL LG+
Sbjct: 8 ALLWLRQDLRTADHPALHAVAGQ-PVLPVFVL--DESDPWAPGGAARWWLHHSLKALGEK 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L +LGA L+L + ++ + E A+ A +V + LY+P + RD I + L G +
Sbjct: 65 LAALGAPLLLLRGKAA-DLIPELADALGAAEVHASRLYEPWARQRDAGIAKALEGQGRRL 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
++G L EP + +G ++ + + L + P I P RL A +G ++
Sbjct: 124 CLHSGATLLEPHRLRTGQGKPYSVYTPFARAVLALGDPPPPIPAPDRLRAAPPPREGLAL 183
Query: 186 EDLGLEDES-EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ L L E A W+PG A L +F Q Y + R G + T+ LS
Sbjct: 184 DALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPGEDRTARLS 243
Query: 245 PYLHFGELSVRKVFQCL-----------WMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
P+LH+GE+S R+ +Q + W+K+ILW RE++
Sbjct: 244 PHLHWGEVSPRQAWQAVAEGGKSGGHITWLKEILW---------------------REFA 282
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ ++ P + PL FPW D +AW++GRTGYP+VDAG+R+LW GW+HNR
Sbjct: 283 YHTLWHRPELPDTPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNR 342
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R++V S VK LL PW+ G +FWDTL+DADL + + WQ+++GS D R+ +P
Sbjct: 343 VRMVVGSLLVKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPI 402
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
+QG KFDPEG YVR ++PELAR+P W+H PW A P +L+AAG+ LG +YP PI+D + G
Sbjct: 403 LQGEKFDPEGRYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDHEGG 462
Query: 474 RER 476
R+R
Sbjct: 463 RKR 465
>gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
Length = 505
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 244/484 (50%), Gaps = 10/484 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D PAL A G + VY E G +RWWL SL+ L
Sbjct: 10 AVVWFRDDLRVTDQPALTRAVASGRPLVCVYLDDTGEGAGRALGGAARWWLHGSLAALDA 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G+
Sbjct: 70 ALARHGGRLLLLRGDAQRE-IERVVHDTGAAAVYWNRRYAQPQRDADAALKATLKARGLE 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV----QAAGTI 180
V+S NG LL EPWE+ G F F AYW + + A + P R+ A
Sbjct: 129 VESSNGSLLNEPWEVMTGAGTPFQIFTAYWRAVRRDRTVAAPLPEPERIAFHPWPAGMRE 188
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ L L + + L +P + A L FV L Y +R + G +T
Sbjct: 189 RALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASLAGYADSRDRPGQPAT 248
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FG +S R+V W A+ FL +G RE+S L ++F
Sbjct: 249 SRLSPFLRFGNVSPRQV----WHAVQGAAQAGGAACAAGAEKFLSELGWREFSHVLLYHF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + PW D +AW++G TGYPLVDAGMRELW TGW+HNR+R++V+S
Sbjct: 305 PALATDNFRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRVRMVVAS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G ++F DTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 365 FLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVTQGRKFD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA + IH PW+A L AAGV L L+YP PI+D D R R A
Sbjct: 425 PQGAYVRRWVPELAGLDAAAIHAPWEASTAQLAAAGVRLALDYPAPIVDHDGARRRALDA 484
Query: 481 IFKM 484
+ +
Sbjct: 485 LATL 488
>gi|456354652|dbj|BAM89097.1| deoxyribodipyrimidine photo-lyase type I [Agromonas oligotrophica
S58]
Length = 437
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/437 (36%), Positives = 237/437 (54%), Gaps = 16/437 (3%)
Query: 48 GRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLY 103
G +RWWL QSL L L +LG ELV+ + + + I A+ A V +N +
Sbjct: 5 GGATRWWLAQSLRALQGELHTLGVELVIRRGPAA-----KVIGALARETNAGAVYWNDVA 59
Query: 104 DPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163
++ L + + + + DLL +P E+ + G F +W + L +
Sbjct: 60 QAEPRAVAADVEVALDAIDVKSRVFADDLLVDPAELRGKEGRGPRVFTPFWKRVLALGDP 119
Query: 164 PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ 223
P + P RL G + +I++LGLE + L W G A + L +F+E
Sbjct: 120 PKPLPIPARLSSPPG-VASLAIDELGLEPTRPDWAGGLRAT-WQAGERAAQERLGKFLET 177
Query: 224 HLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
+ Y +R + ++TS +SP+L FGE+S R+++ +A EE+ + F
Sbjct: 178 AVRSYAADRDRPDIDATSRMSPHLRFGEISPRQIWHA-----ARFAAEEHPAFARGIEKF 232
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
L +G RE+SR+L +N P R L ++ FPW + +AW++GRTGYP+VDAGMRE
Sbjct: 233 LSELGWREFSRHLLYNNPDLATRNLQASFDAFPWAQNDAALQAWQRGRTGYPIVDAGMRE 292
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
LW TG +HNR+R++ +S VK LL+ WR G ++FWDTL+DAD + WQ+++GS D
Sbjct: 293 LWHTGSMHNRVRMVAASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADA 352
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNY 463
R+ +P +QG KFD G YVR+W+PELAR+P IH PW A P L AGV LG +Y
Sbjct: 353 APYFRVFNPVLQGEKFDSNGTYVRRWVPELARLPASLIHQPWAAKPLELAEAGVALGRSY 412
Query: 464 PKPIIDLDLGRERLTQA 480
P PI++ GRER A
Sbjct: 413 PAPIVEHRHGRERALAA 429
>gi|365857119|ref|ZP_09397117.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
gi|363716733|gb|EHM00129.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
Length = 484
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 173/468 (36%), Positives = 260/468 (55%), Gaps = 13/468 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
I+WFR DLR+EDN AL AA+ +G PVY + G++ G RWWL SL L ++L
Sbjct: 13 ILWFRNDLRLEDNAALHAAS-EGKTLPVYVLDDEAAGRWAVGAAGRWWLHHSLKALAEAL 71
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ LG+ L+L + + + + I A V L P + RD +I + L G ++
Sbjct: 72 RRLGSGLLLLRGRAE-TLIPQLAREIGAAAVHAATLAAPWARQRDAAIAKALQAGGRRLE 130
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
++ L+ P + +G ++ + + +++ P I P RL G S++
Sbjct: 131 LHDSSLV-RPDVVVTGQGKPYSVYTPFARAVMKLGDPPPPIPAPRRLDGVKAPTGGISLD 189
Query: 187 DLGL-EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
DL L E A W PG + A L F+ L Y R + G + +S LSP
Sbjct: 190 DLALLPRRPEPDWAAGFSSLWQPGEAGARDQLQRFLNDALAEYPDGRNRPGEDGSSRLSP 249
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LH+GE+S R+V+ + E+ + FL+ + RE+S + ++ P E
Sbjct: 250 HLHWGEISARQVWHAV---------RESEAPASAADTFLKEIIWREFSHNILWHHPGLPE 300
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
PL FP++ ++ +AW++GRTGYP+VDAGMR+LW GW+HNR+R+IV+S VK
Sbjct: 301 APLRPEYTQFPYNRNIEAQRAWQRGRTGYPIVDAGMRQLWRLGWMHNRVRMIVASLFVKH 360
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL PW+ G +FWDTL+DADL + WQ+++GS D R+ +P +QG KFDP+GEY
Sbjct: 361 LLQPWQDGEAWFWDTLVDADLGNNSFNWQWVAGSGADASPFFRIFNPVLQGEKFDPKGEY 420
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
VR ++PELA++P W+H PW+AP VL+ AGV LG YP+PI+D G
Sbjct: 421 VRTFVPELAQLPDRWLHRPWEAPAEVLREAGVTLGETYPEPIVDHATG 468
>gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751949|ref|ZP_16188985.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753807|ref|ZP_16190796.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|421757530|ref|ZP_16194409.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|421759384|ref|ZP_16196217.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674702|ref|ZP_18111618.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086284|gb|EKM86404.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|409086489|gb|EKM86608.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|409091110|gb|EKM91115.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092478|gb|EKM92451.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|417434746|gb|EKT89688.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
Length = 464
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 256/479 (53%), Gaps = 21/479 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL ++ ++ ++ G S+ WL SL+
Sbjct: 1 MSKKIAIHWFRQDLRLADNPALYQVSQADETITIFILDKNQD----IGSASKLWLHHSLN 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL + + F + + L + + I T +N YD S+ RD IK+ L +
Sbjct: 57 SLNSSLDNK----LNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQ 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I+V S+NG LL EPW+ + G + + ++ + ++++ ++I P
Sbjct: 113 HKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKP-NFSYLRKLN 171
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ +++ L L + N + + W G S + ++L EF++ + Y R + +ST
Sbjct: 172 NSENLDSLKLIEPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDST 229
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYLHFGE+S ++F + + EE+F ++ + R++S Y + +
Sbjct: 230 SKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQIYYY 280
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P H + + F W D K W++G+TG P+VDAGMRELW G++HNR+R+IV+S
Sbjct: 281 PELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVAS 340
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q KF+
Sbjct: 341 FLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFE 400
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
EY+R+++PEL +P + I PW+A VL+ AG+ LG NYPKPI+DL R+R Q
Sbjct: 401 AY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQ 458
>gi|268317159|ref|YP_003290878.1| deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
Length = 486
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/475 (34%), Positives = 243/475 (51%), Gaps = 13/475 (2%)
Query: 13 DLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGA 71
DLR+ +NPAL AA R G + P++ W + E PG RWWL SL+ L L+ G+
Sbjct: 12 DLRLAENPALDAALRTGHPIVPLFIWPRRAERFERPGAARRWWLHHSLAALDAELQRRGS 71
Query: 72 ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGD 131
L+L E L++ + + + +N P SI L I + G
Sbjct: 72 RLILRVAEDPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAPVLRRRSIRLIETVGR 131
Query: 132 LLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLE 191
L + ++ + G + F +W Q + PA LPP R+ + D ++E L L
Sbjct: 132 TLLDLEQLRTKSGDVYRVFTPFWKALRQQYIPPAPFLPPARIPAPSSWPDSDTLESLALL 191
Query: 192 DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGE 251
+ +S + W PG + A L F+ L Y + R +L +TS LSPYL GE
Sbjct: 192 PRPDWASETI-ASHWLPGEAAAWSTLRTFLAYGLPHYDRARDRLDQEATSKLSPYLANGE 250
Query: 252 LSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSN 311
+S LW +++ + ++V F R + RE+ YL ++FP T RPL
Sbjct: 251 ISP----HLLW--RVVGEAQRAGVSSKAVEAFRRQLAWREFGYYLLYHFPETTHRPLRPE 304
Query: 312 LKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWR 371
FPW + +AW+ GRTG P++DA MR+LW +GW+HNR R++V+S K L + W
Sbjct: 305 WSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLLVASLLTKNLRIHWL 364
Query: 372 WGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLP 431
G ++FWDTL+DADL + LGWQ+ +G D R+ +P +Q KFDPEG Y+R+WLP
Sbjct: 365 RGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSKKFDPEGRYIRRWLP 424
Query: 432 ELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486
EL R+P IH PW+AP A + + YP PI+ L RE A+++ W+
Sbjct: 425 ELGRLPAPCIHAPWEAP----SCAEMLREIGYPSPIVSLMDSREE-ALALYENWK 474
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/482 (35%), Positives = 243/482 (50%), Gaps = 20/482 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR D+PAL AA G + VY + G SRWWL +LS L
Sbjct: 32 VIVWFREDLRFSDHPALQAATATGHPLICVYVLDDETPALHALGGASRWWLHGALSDLRS 91
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L L+ K S + + A V ++H +D I L + G+S
Sbjct: 92 TLSRHHGTLLTLKG-SAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQGVS 150
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
++ G +L +P ++ + G + F A+W K Q Q P + PP L D S
Sbjct: 151 SEASWGTVLLDPTQVQTKEGRFYQVFTAFW-KAFQSQDVPVPLDPPAHLSFHPLPDDLLS 209
Query: 185 IEDLGLEDES-----EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
L DE+ A L W PG A + L +F+ RY K R ++G
Sbjct: 210 KYRL---DETTLLPTHPDWAAGLRATWEPGEREAHEHLEDFLRHDCARYGKGRDEMGREG 266
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSPYL G +S R+V++ + ++ E FL +G RE+++Y F+
Sbjct: 267 TSRLSPYLASGAISPRQVWEAI---------QKKGAHDEGARIFLSEIGWREFAKYTLFH 317
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P + L PW + AW+QGRTG P+VDAGMR+LW TGW+HNR R+IV
Sbjct: 318 QPRLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMIVG 377
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF K LL+ WR G +F DTL+DAD + + WQ+++G+ D R+ +P QG KF
Sbjct: 378 SFLTKHLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGVKF 437
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G+Y+RQW+PEL ++ + + PW+A L+ AGV G YP+PI+DL GR+R
Sbjct: 438 DPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERAGVTFGKTYPRPIVDLKEGRDRAMA 497
Query: 480 AI 481
A
Sbjct: 498 AF 499
>gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
Length = 500
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 246/484 (50%), Gaps = 10/484 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G + VY + G +RWWL +L+ L
Sbjct: 10 AIVWFRDDLRVTDQPALTRAVASGRPLVCVYVDDTGDGAGRALGGAARWWLHGALAALDA 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G+
Sbjct: 70 ALARHGGRLLLLRGDAQRE-IERVVHDTGAAAVYWNRRYAQPQRDADAALKASLKARGLE 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV----QAAGTI 180
V+S NG LL EPWE+ G F F AYW + ++ A + P R+ AA
Sbjct: 129 VESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRLVAAPLPEPERIAFHPWPAAVRE 188
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
++ L L + + L +P + A L FV + L Y R + G ++T
Sbjct: 189 RALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAGYADTRDRPGESAT 248
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FG +S R+V W A+ FL +G RE+S L ++F
Sbjct: 249 SRLSPFLRFGNVSPRQV----WHAVQGAAQAGGAACAAGAEKFLSELGWREFSHVLLYHF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + PW D +AW++G TGYPLVDAGMRELW TGW+HNR R++V+S
Sbjct: 305 PALATDNFRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRARMVVAS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G ++F DTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 365 FLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVTQGRKFD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA + IH PWDA L AAGV LGL+YP PI+D D R R A
Sbjct: 425 PQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDHDGARRRALDA 484
Query: 481 IFKM 484
+ +
Sbjct: 485 LATL 488
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 171/482 (35%), Positives = 243/482 (50%), Gaps = 20/482 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR D+PAL AA G + VY + G SRWWL +LS L
Sbjct: 13 VIVWFREDLRFSDHPALQAATATGHPLICVYVLDDETPALHALGGASRWWLHGALSDLRS 72
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L L+ K S + + A V ++H +D I L + G+S
Sbjct: 73 TLSRHHGTLLTLKG-SAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQGVS 131
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
++ G +L +P ++ + G + F A+W K Q Q P + PP L D S
Sbjct: 132 SEASWGTVLLDPKQVQTKEGRFYQVFTAFW-KAFQSQDVPVPLDPPAHLSFHPLPDDLLS 190
Query: 185 IEDLGLEDES-----EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
L DE+ A L W PG A + L +F+ RY K R ++G
Sbjct: 191 KYRL---DETTLLPTHPDWAAGLRATWEPGEREAHEHLEDFLRHDCARYGKGRDEMGREG 247
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSPYL G +S R+V++ + ++ E FL +G RE+++Y F+
Sbjct: 248 TSRLSPYLASGAISPRQVWEAI---------QKKGAHDEGARIFLSEIGWREFAKYTLFH 298
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P + L PW + AW+QGRTG P+VDAGMR+LW TGW+HNR R+IV
Sbjct: 299 QPRLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMIVG 358
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF K LL+ WR G +F DTL+DAD + + WQ+++G+ D R+ +P QG KF
Sbjct: 359 SFLTKHLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGVKF 418
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+G+Y+RQW+PEL ++ + + PW+A L+ AGV G YP+PI+DL GR+R
Sbjct: 419 DPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERAGVTFGKTYPRPIVDLKEGRDRAMA 478
Query: 480 AI 481
A
Sbjct: 479 AF 480
>gi|427429184|ref|ZP_18919220.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
gi|425880864|gb|EKV29558.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
Length = 481
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 238/482 (49%), Gaps = 26/482 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYT------WCPKEEGQFYPGRVSRWWLKQS 58
IV FR DLR+ D+ AL+AA G+ V P+Y E + G V RWWL S
Sbjct: 10 VIVLFRDDLRLADHRALSAAVGTGAPVIPLYVVDTAHGLGAGETARPLGGAV-RWWLHYS 68
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L L + L++LG+ L+L + + + + A +V+ N P + L
Sbjct: 69 LESLSEGLRALGSRLIL-RAGRPHEVVPQVAAETGAARVLLNETVVPTHRESARRMAAAL 127
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
+ G+ + D L P E+ G + + +W Q +P ++ PP RL
Sbjct: 128 EDQGVEAVTLRPDALVWPSELKTGTGGHYKVYTPFWKALKQAVGDPETLPPPERLPAPDH 187
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
D + + L + L W+PG A L F++ L RY R
Sbjct: 188 WPDSTPLAEFRLTPAMPDWAGGLR-ESWTPGEDGAWACLHTFIDGALARYRTGRNLPAEV 246
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSP+L FGE+S R+V+ + E S +L +G RE++RY F
Sbjct: 247 GTSRLSPHLRFGEISARQVWNAV---------RSMAEPNASTDAYLSEIGWREFNRYQLF 297
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+ P H PL + FPW D + +AWR+G TGYP+VDAGMRELW TGW+HNR+R+IV
Sbjct: 298 HNPDLHRTPLRPEFRLFPWREDDADIRAWRKGLTGYPIVDAGMRELWETGWMHNRVRMIV 357
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
SF VK LL PW+ G +FWDTL+DAD + WQ+++G D R+ +P +QG K
Sbjct: 358 GSFLVKDLLAPWQVGEAWFWDTLVDADWGSNPGNWQWVAGCGADAAPFFRVFNPVLQGEK 417
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP G+YVR+W+PEL M IH PW AP + + YP+P++D R R
Sbjct: 418 FDPRGDYVRRWVPELREMDRRVIHKPWQAPLELART-------GYPEPMVDHSHARHRAL 470
Query: 479 QA 480
A
Sbjct: 471 AA 472
>gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
Length = 476
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 243/474 (51%), Gaps = 30/474 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR+ DNPAL AA G V PVY + Q G RW L+Q+L+ L
Sbjct: 8 VIVWFRRDLRLSDNPALLAATAMGQVLPVYI--HENNQQEGGGGAWRWGLQQALAALNAD 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ +L + + L E A+ AT V +N LY P ++ RD +IK+ L+E G+ V
Sbjct: 66 LQ---GKLCCYVGDPA-RLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSLIERGLQV 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+NG LL+EPW++ + F Y+ + +Q P + A T+ ++
Sbjct: 122 RSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPM------DAPPTVTWATL 175
Query: 186 EDLGLEDESEKSSNALLGRG---------WSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+ LLG WS G A F+ L Y + R G
Sbjct: 176 PAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQTRFEHFLSHGLACYDQGRDFPG 235
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L +G LS +V+ L E + SV F + RE++ Y
Sbjct: 236 RDCTSRLSTALQYGLLSPNQVWYGL---------EHAKADEHSVDKFRSELAWREFAYYQ 286
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
F+FP + +FPW D W+ G+TG P+VDAGMRELW TG +HNR+R+
Sbjct: 287 LFHFPSLPHKNFQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNRVRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+V SF VK LLL WR G +F D L+D DL + WQ+++G D R+ +P QG
Sbjct: 347 LVGSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPVTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
KFD G Y R+++PELA +P +++ PW AP ++L+ AGV LG +YP+P++DL
Sbjct: 407 EKFDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVDL 460
>gi|349701797|ref|ZP_08903426.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter europaeus LMG
18494]
Length = 466
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 247/478 (51%), Gaps = 47/478 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TI+WFR DLR+ DNPAL A G V +Y + F G +WWL +LS L
Sbjct: 7 TIMWFRDDLRLGDNPALCDAVSRGRVVCLYV----HDPAFPLGGAEKWWLHGALSALDHD 62
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ G L + + T ++L + A VV+N Y P + D +K L G+
Sbjct: 63 LRAQGGRLCIMAGD-THESVLWLAARTGAGAVVWNRRYGPRARQVDTDVKAALKARGVDA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA-----------SILPPW--- 171
S+ G++L+EPW++ ++G F F +W + +Q + P +++PP
Sbjct: 122 HSHPGNMLHEPWQVRTKQGTPFRVFTPWW-RAVQAKGPPLPPLPAPDQPAFAVVPPEIGD 180
Query: 172 RLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
RLV+ A DL L + L + W PG + A L FV + + Y
Sbjct: 181 RLVRPA---------DLALLPVRPDWAQGLRAQ-WQPGEAAAHARLDAFVAERVHGYATQ 230
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R+ +TS LSPYL FG +S R+V+ A E G + FL +G R+
Sbjct: 231 RELPAQPATSGLSPYLRFGHVSPRQVWH---------AVETLGPGDQDSACFLSEVGWRD 281
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
++ F+FP L PW D +AW++G+TGYP++DAGMRELW TGW+H
Sbjct: 282 FAHATLFDFPGMGTGNLRPEYDNMPWRHDPVALRAWQKGKTGYPIIDAGMRELWHTGWMH 341
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++V+SF K LLL WR G +F DTL+DAD + WQ+++G D R+ +
Sbjct: 342 NRVRMVVASFLTKHLLLDWRVGEAWFADTLVDADAASNPFNWQWVAGCGLDAAPYFRVFN 401
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P QG KFDP G+YVR+W+PE+A +P ++IH PW A P+ A G YP PI+D
Sbjct: 402 PVAQGEKFDPAGDYVRKWVPEIAHLPNKYIHAPWKAGPS---APG-----GYPAPIVD 451
>gi|357417378|ref|YP_004930398.1| deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
gi|355334956|gb|AER56357.1| Deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
Length = 471
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 247/473 (52%), Gaps = 18/473 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DNPAL AA G PVY P EEG++ PG S W +SL L
Sbjct: 4 ALVWFRSDLRLADNPALHAALEAGFDPVPVYIHAPHEEGRWAPGAASNAWRHRSLKALDL 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G+ L++ + +S + L + I +A + +N Y+P + RD +IK+ L + +
Sbjct: 64 ALRQRGSRLLVRRGDSAMV-LQQLIEQSRAQALFWNRKYEPATQPRDAAIKQALKQRHVQ 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S N LL EPW++ G + F A++ + + A P L + G
Sbjct: 123 VRSCNAALLAEPWDVQTRTGEPYKVFTAFYRNVMAGLAQRALQDAPEALPAVPSALKGEG 182
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
I+ LGL + +A W G + A + L FVE L Y R TS LS
Sbjct: 183 IDALGLA--PALNWDAGFWEIWQAGEAGAHQALEVFVEGALRGYLDQRDLPDRIGTSRLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE++ +V L + + F+R + RE++ +L +FP T
Sbjct: 241 PHLHFGEIAPWRVIARL-------QAQRGVSLDRDIDGFIRQLVWREFAHHLLHHFPHTA 293
Query: 305 ERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
++ L F W + G +AW+ GRTG P+VDAGMRELW TG +HNR+R+IV+S+
Sbjct: 294 QQNLNPRFDRFDWASTAPGPLQAWQHGRTGVPIVDAGMRELWQTGMMHNRVRMIVASYLT 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W G ++FW TL+DADL + LGWQ+++G+ D R+ +P Q KFDP+
Sbjct: 354 KHLRVHWLEGARWFWQTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQARKFDPQA 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP-KPIIDLDLGRE 475
Y+ +W+PEL +P PW+ P A +YP +PI+DL GR+
Sbjct: 414 RYITRWVPELEALPVNARFAPWEFPQLCRGRA-----CDYPHQPIVDLAQGRQ 461
>gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
Length = 518
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 241/474 (50%), Gaps = 20/474 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G + V+ + G +RWWL SL+ L
Sbjct: 36 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGDGAGRALGGAARWWLHGSLAGLDA 95
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G++
Sbjct: 96 ALARHGGRLLLLRGDAQRE-IERVVHDTGAEAVYWNRRYAQPQRDADAALKASLKARGVT 154
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW-----DKCLQMQM-EPASI-LPPWRLVQAA 177
V+S NG LL EPWE+ G + F AYW D+ + + + EP I PW
Sbjct: 155 VESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAVPLPEPERIAFHPW-----P 209
Query: 178 GTIDGCSI--EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
+ C++ + L L + L +P + A L F+ L Y R
Sbjct: 210 KAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTASLAGYADARDLP 269
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+TS LSP+L FG LS R+V W A FL +G RE+S
Sbjct: 270 DRPATSRLSPFLRFGNLSPRQV----WHAVQGAANAGGAAVAADADKFLSELGWREFSYT 325
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L ++FP + PW D +AW++GRTGYPLVDAG+RELW TGW+HNR+R
Sbjct: 326 LLYHFPALASDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVR 385
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V+SF +K LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P Q
Sbjct: 386 MVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQ 445
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
G KFDP+G YVR+W+PELA + IH PW+A P L AAGV LG++YP P+++
Sbjct: 446 GQKFDPDGAYVRRWVPELAGLDNASIHAPWEASPLELDAAGVRLGVDYPAPLVE 499
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 166/477 (34%), Positives = 256/477 (53%), Gaps = 15/477 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFR+DLR++DN AL AA G + +Y P+ G G WWL SL L S
Sbjct: 10 ILWFRKDLRLDDNKALNAAHFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDGS 69
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ L+L E+ L L I A V +N YDP + D I+ +L + I V
Sbjct: 70 LRKRRGGLLLASGEA-LGVLRSLIRQSDADAVFWNRRYDPPGISIDAHIEHELEKQAIEV 128
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EP ++ G + + +W + L+ +EP + P +L A+ +
Sbjct: 129 KSFGGQLLHEPSQLMTGSGTPYRVYTPFW-RALERSIEPEPLDIPSKLQLASKLPGSEKL 187
Query: 186 EDLGL-EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
E L + + +SN W+PG A + L F+E L Y +NR +TS+LS
Sbjct: 188 ESWKLLSTQPDWASN--FADLWTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSMLS 245
Query: 245 PYLHFGELSVRKVFQCL-WMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
P+L GE+S +++ + + L A + + F + + R++S +L +FP
Sbjct: 246 PHLALGEISPARIWDATRGLSKHLPAAD--------IVHFRKEIAWRDFSYHLLAHFPRL 297
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
F W + +F AW +G TGYP+VDAGMR+LW GW+HNR+R+I +SF +
Sbjct: 298 ATANWDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLI 357
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG KFDP+G
Sbjct: 358 KDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDG 417
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
++VR +PEL ++ ++IH P++AP +VL AA V LG YP+P++D R+R A
Sbjct: 418 DFVRSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRALAA 474
>gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
Length = 486
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 255/481 (53%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 69 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 187
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 188 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 246
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ L +F
Sbjct: 247 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTLLHHF 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 302 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 362 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 422 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 481
Query: 481 I 481
Sbjct: 482 F 482
>gi|337755263|ref|YP_004647774.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446868|gb|AEI36174.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 468
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/478 (33%), Positives = 258/478 (53%), Gaps = 25/478 (5%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ +E G S+ WL SL+
Sbjct: 1 MSKKIAIHWFRQDLRLADNPALHQASQADETITIFILDENQE----IGGASKLWLHHSLN 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L KSL L F+ + L + + + T +N YD S+ RD IK+ L E
Sbjct: 57 SLN---KSLDNRLHFFRG-NPLKIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFLQE 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPW--RLVQAAG 178
I++ S+NG LL EPW+ + G + + ++ + ++++ ++I P L +
Sbjct: 113 QDINISSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPCFNSLEKLET 172
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
D S++ L E + S ++ + W G + ++L EF++ + Y R + +
Sbjct: 173 AADLSSLKLL----EPKLSWQNIIDQ-WQIGEVASHQILEEFLDSKVKEYKTARDFMSTD 227
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
STS LSPYLHFGE+S ++F + + EE+F ++ + R++S Y +
Sbjct: 228 STSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQIY 278
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P H + + F W D K W+ G TG P+VDAGMRELW TG++HNR+R+IV
Sbjct: 279 YYPELHNKNIDQKFDSFEWDNDPTLLKKWQTGHTGIPIVDAGMRELWQTGYMHNRVRMIV 338
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q K
Sbjct: 339 ASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEK 398
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
F+ EY+R+++PEL +P + I PW+A VL+ AGV+LG NYPKP++DL R++
Sbjct: 399 FEA-FEYIRKYVPELKFLPDKLIAKPWEASELVLQEAGVKLGDNYPKPVVDLKKSRDK 455
>gi|387824331|ref|YP_005823802.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
Length = 464
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 260/481 (54%), Gaps = 25/481 (5%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ ++ G S+ WL SL+
Sbjct: 1 MSKKVAIHWFRQDLRLADNPALYHASQADETITIFILDENQD----IGGASKLWLHHSLN 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +SL + + F + L + + I K T +N YD S+ RD IK+ L E
Sbjct: 57 NLNRSLN----DKLNFYNGNPLEIIKKLIKENKVTDFYWNRCYDKYSINRDTQIKQFLQE 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPW--RLVQAAG 178
I+V S+NG LL EPW+ + G + + ++ + ++++ +I RL++ A
Sbjct: 113 QSINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIKKAVFSRLIKLAS 172
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ +++ L L + N + + W G A ++L +F+ + Y R + +
Sbjct: 173 S---DTLDSLKLLEPKLTWQNII--KQWQVGEKAAAQLLEQFLTTKIKDYKIARDYMSTD 227
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS LSPYLHFGE+S ++F + + EE+F ++ + R++S Y +
Sbjct: 228 ATSTLSPYLHFGEISPNQIFNAVQSLDSIGNNEEHF---------IKELVWRDFSYYQIY 278
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P H + + F W + K W++G+TG P+VDAGMR+LW TG++HNR+R+IV
Sbjct: 279 YYPELHNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVRMIV 338
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q K
Sbjct: 339 ASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEK 398
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
F+ EY+R+++PEL +P + I PW+A VL+ AG+ LG NYP+PI+DL R++
Sbjct: 399 FEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGIILGQNYPRPIVDLKNSRDKAL 457
Query: 479 Q 479
Q
Sbjct: 458 Q 458
>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/475 (33%), Positives = 255/475 (53%), Gaps = 9/475 (1%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW R DLR++DNPALA AA G V P+ + +G G +WWL SL G+
Sbjct: 11 VVWLRDDLRLDDNPALAEAADSGRPVVPLVVLDEESDGVRSLGGTHKWWLHHSLQCFGKD 70
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L GA L+L + +++ +++ + + AT ++ N YD S D +++ L + V
Sbjct: 71 LADKGAPLILRRGKAS-EHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGS-DVEV 128
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
Q + ++L++P ++ + G + + +W K L I PP +L +
Sbjct: 129 QRFTANILHDPDKVRTKTGGWYKVYTPFW-KNLAEDEPRDPIDPPDKLASLDDQPRSDRL 187
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
E+ L S + W G + A + EF ++ L Y R + G ++TS +SP
Sbjct: 188 EEWDLLPTRPDWSGGIAAF-WKVGEAAAHERFEEFSDEWLNDYPDGRDRPGDDATSRMSP 246
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L +GE+S +++ M + + + G +++ F + + R+++ +L NF
Sbjct: 247 HLRWGEISPYRLWH---MAEACANRRKTIPG-DALKTFKKELVWRDFNYHLLHNFGPLAT 302
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
+ FPW + +AW++G TGYP+VDAGMR+LW GW+HNR+R+IV SF K
Sbjct: 303 QNYNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNRVRMIVGSFLTKD 362
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++FWDTL+D D+ + WQ+I GS D R+ +P Q +FD +G+Y
Sbjct: 363 LLIDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPVTQSQRFDGDGDY 422
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+R+++PELA +P + +H PW+A + L AGVELG YPKPI+D R+R A
Sbjct: 423 IRRFVPELADLPDKVLHAPWEADADTLAEAGVELGKTYPKPIVDHGTARKRALDA 477
>gi|421599238|ref|ZP_16042485.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. CCGE-LA001]
gi|404268645|gb|EJZ33078.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. CCGE-LA001]
Length = 397
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 218/398 (54%), Gaps = 7/398 (1%)
Query: 87 ECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHA 146
E + A+ V +N + + ++ L +LG QS+ GDLL P I ++ G
Sbjct: 4 EVVRECGASAVYWNAIAQAPHQAVERQLEAALAKLGTDSQSFPGDLLVPPAAIRNKEGRG 63
Query: 147 FTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGW 206
F +W + L + +P LP + ++ AG I G +E LE + L W
Sbjct: 64 LRVFTPFWRRVLALG-DPPKPLPAPKELRPAGKIAGDRLESWKLEPLKPDWAGGLR-ETW 121
Query: 207 SPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI 266
+PG A L F++ Y +R + + S LSP+L FGELS R+V+
Sbjct: 122 TPGEIAARARLGAFLDHTARLYVGDRDRPDRDGNSRLSPHLRFGELSPRQVWHA-----A 176
Query: 267 LWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA 326
+A E+ + V FL +G RE+ R+L ++ P L +N FPW D A
Sbjct: 177 RFAAAEDPALGQGVEKFLTELGWREFCRHLLYDHPDLATANLQANFDRFPWQPDKKALAA 236
Query: 327 WRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADL 386
WR+GRTGYP+VDAG+RELW TG +HNR+R++V+SF VK LL+ WR G +FWDTL+DAD
Sbjct: 237 WRRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWREGEAWFWDTLVDADA 296
Query: 387 ECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWD 446
+ WQ+++G D R+ +P++QG KFDP+G YVR+W+PEL +P + IH PW
Sbjct: 297 GSNPANWQWVAGCGADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELKDLPAKLIHQPWQ 356
Query: 447 APPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
A P L +AG+ LG YP+PI+D GRER A K+
Sbjct: 357 ATPIELASAGLTLGKTYPQPIVDHARGRERALAAYAKI 394
>gi|424793391|ref|ZP_18219508.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796635|gb|EKU25108.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 473
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 253/474 (53%), Gaps = 30/474 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFRRDLR+ D+PAL AA G PVY P +EG + G S WL+++L+ L
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWAAGAASLSWLQRALAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ L+L + + L E I+ A V +N Y+P + RD +K +L G+
Sbjct: 64 QLQARGSRLILRQGPAE-TVLRELIAECGAVAVYWNRRYEPATQPRDARLKRELRAQGLE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V SYNG LL+EPW++ ++G + F +W L P P L +
Sbjct: 123 VHSYNGALLFEPWQLATQQGGPYKVFTPFWRSALSHWQVPVLRPAPKTLPPPPPALPSLP 182
Query: 185 IEDLGLEDESEKSSNALLG--RG----WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
++ LGL LG RG W PG + A + L FV+ L Y R +
Sbjct: 183 LQQLGLAPA--------LGWDRGFWDVWQPGEAGAHEALEVFVDGALRGYVAGRDRPDQI 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSP+LHFGE++ ++ L + ++ ++R +G R+++ +L
Sbjct: 235 GTSRLSPHLHFGEIAPWRIVAAL-------ENARSAATGAAIDGYIRQLGWRDFAHHLLH 287
Query: 299 NFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+FP T E L F W D +AW++GRTG P+VDAG+RELW TGW+HNR+R+I
Sbjct: 288 HFPATPEHNLNPRFARFRWATPDPAQLQAWQRGRTGVPIVDAGLRELWHTGWMHNRVRMI 347
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+S+ K L + W G ++FWDTL+DADL + LGWQ+++G+ D R+ +P Q
Sbjct: 348 VASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQ 407
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDL 470
KFDP+G Y+ +W+PELA +P PW P + +A +YP+ PI+DL
Sbjct: 408 KFDPQGRYIARWVPELAALPVAERFAPWLTPQRLATSAP-----HYPRQPIVDL 456
>gi|367475309|ref|ZP_09474774.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
gi|365272410|emb|CCD87242.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
Length = 415
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 224/415 (53%), Gaps = 8/415 (1%)
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
++SLGA+LV+ + + L + KA V +N + ++ L E+G++
Sbjct: 1 MQSLGADLVIRRGPAA-TVLSQLARETKAGAVYWNDVAQRGPRAVAERVEAALGEIGVTS 59
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ + DLL +P E+ + G F +W + L + P + P RL G I ++
Sbjct: 60 RVFADDLLVDPAEMRGKDGRGPRVFTPFWKRVLALGDPPKPLPMPVRLPPVPG-IASLAV 118
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
++L LE + L W G A + L +F+ + Y +R + +TS LSP
Sbjct: 119 DELALEPTRPDWAGGLRAT-WQAGERAAQQRLNDFLTSSVGTYAADRDRPDVEATSRLSP 177
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L FGE+S R++F +A EE + + FL +G RE+SR+L +N P
Sbjct: 178 HLRFGEISPRQIFHA-----ARFAAEERPALAKGIDKFLSEVGWREFSRHLLYNNPDLAT 232
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
R L FPW D AW++G+TGYP+VDAGMRELW TG +HNR+R++ +S VK
Sbjct: 233 RNLQPTFDAFPWTQDDAALTAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKH 292
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KFD G Y
Sbjct: 293 LLIDWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDASGSY 352
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
VR+W+PELAR+P IH PW A P L AGV LG +YP P ID GRER A
Sbjct: 353 VRRWVPELARLPASLIHQPWAAKPLELAEAGVTLGRSYPAPTIDHKRGRERALAA 407
>gi|170780895|ref|YP_001709227.1| deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 508
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 175/486 (36%), Positives = 261/486 (53%), Gaps = 19/486 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
TIVW R DLR+ DNPA+ AA G V +E P G +RWWL SLS LG+
Sbjct: 24 TIVWLRDDLRVADNPAMHAAVERGEPIVVLYVLDEESAGIRPLGGAARWWLHMSLSRLGE 83
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LG+ LVL + ++ + + + + A V++N Y + D +IK+ L + G+
Sbjct: 84 SLRGLGSPLVLRRGKAA-DVVDDLVREVGAGAVLWNRRYGGAEIAVDTAIKKDLGDRGLD 142
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGC 183
V+S+ G LL EPW + +++G F + +W K Q + EP P P L
Sbjct: 143 VRSFQGSLLVEPWTVVNKQGEPFRVYTPFW-KTAQDREEPRKPFPAPDALEAPRKAPRSD 201
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++D GL ++ A L PG + + L +FV L Y R + +TS L
Sbjct: 202 DLDDWGLL-PTKPDWAAGLREACDPGEAAGLQRLEDFVHHELEDYAAQRDEPAAMTTSRL 260
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE-SVTFFLRAMGLREYSRYLCFNFPF 302
S YL +GE+S +V+ ++ + + G E + T FL +G RE+S +L ++ P
Sbjct: 261 SAYLRWGEVSPFQVWH-----RVQRTRGKKVGGDEVNATKFLSELGWREFSYHLLYHQPD 315
Query: 303 THERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
R + FPW + AW++G TG PLVDAGMR LW G +HNR+R++V+SF
Sbjct: 316 LATRNFVPRFDAFPWDEPRDDTLGAWQRGETGVPLVDAGMRALWKDGHLHNRVRMVVASF 375
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KFDP
Sbjct: 376 LIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPVLQGQKFDP 435
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL------GL-NYPKPIIDLDLGR 474
GEY+R ++PELA P + +H PW A +++ +A + GL YP PI+DL R
Sbjct: 436 SGEYIRSYVPELAHAPRDVVHEPWKAQGDLVASAEDDADASADGGLAAYPSPIVDLKESR 495
Query: 475 ERLTQA 480
+R A
Sbjct: 496 QRALAA 501
>gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
Length = 534
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 254/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 58 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPL-GGAARWWLHGSLRALGA 116
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 117 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 175
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 176 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 235
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 236 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 294
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 295 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 349
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 350 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 409
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 410 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 469
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 470 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 529
Query: 481 I 481
Sbjct: 530 F 530
>gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
52237]
gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
52237]
Length = 534
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 254/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 58 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 116
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 117 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 175
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 176 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 235
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 236 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 294
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 295 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 349
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 350 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 409
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 410 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 469
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 470 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 529
Query: 481 I 481
Sbjct: 530 F 530
>gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
Length = 500
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 237/477 (49%), Gaps = 8/477 (1%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
+++WFR DLR+ DNPALAA A + ++ P G +RWWL QSL L
Sbjct: 26 SLLWFRDDLRLSDNPALAALAEARTPLAALYVLDEDSPGVRPLGGAARWWLAQSLRALAA 85
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G L+L + + + E + + A V FN DH++ +L+
Sbjct: 86 DLKDRGVPLILRRGPAN-RVVPEVAALLGAATVAFNDRAGAAETRVDHAVAARLLSEDRR 144
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+ LL+ P + G TF ++ L+ + + P L A +G +
Sbjct: 145 VLSFCAHLLHPPGSVEGASGGMPRTFSSFHRAALKARRLDTPLPAPKHLDGVAHPPEGET 204
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E LE + L W+ G + A L F++ L Y + R + N S LS
Sbjct: 205 LESFDLEPTHPDWAGGLRS-AWTAGEAAAQARLAAFMDAGLAGYAEGRDRPDLNHVSRLS 263
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L FGE+S R++ + A E F + RE+S +L P
Sbjct: 264 PHLRFGEISPRQILSA-----VRHAAEAGAVPLVDADKFEAELYWREFSYHLLAEMPDLA 318
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ FPW G KAW +G TGYPLVDAG+R+LW TGW+HNR+R++V+SF K
Sbjct: 319 RSNIQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNRVRMVVASFLTK 378
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+ WR G +FWDTL+DAD + WQ+++GS D R+ +P QG KFDP+G
Sbjct: 379 HLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPVTQGEKFDPDGT 438
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR ++PEL ++P IH PW A + L AG+ LG YP+P++D RER +A
Sbjct: 439 YVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAARERALRAF 495
>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 466
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 168/487 (34%), Positives = 242/487 (49%), Gaps = 41/487 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DNPAL AAA G V +Y W G PG +RWWL SL+ L +
Sbjct: 11 AVVWFRDDLRLADNPALHAAAESGRPVICLYVWDEDSPGLRSPGEAARWWLHHSLTSLEE 70
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
S+ G+ L + +T L E ++ + A V +N Y D +K + G+
Sbjct: 71 SIGRAGSALAI-RTGPAERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAARDTGLV 129
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
S+ +LL+EPW + G AF+ + +W CL + EP LP R ++ ++
Sbjct: 130 ANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACL-ARPEPRRPLPALRRLRPGPSLPSLE 188
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+++L L ++ L W PG A + L+ F+ + L RY R G +TS LS
Sbjct: 189 LDELKLLPVHPDWADGLR-ETWKPGERAAHRELSAFLGEGLARYRAERDVPGIAATSRLS 247
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P L +GELS +V+ A + E FL +G RE++ + F P
Sbjct: 248 PRLRWGELSPFQVWHAT-------AAARDRSTAEGAATFLSELGWREFAYHTYFERPALA 300
Query: 305 ERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ FPW +AW+QGRTG PLVDAGMRELW TG +HNR+R++ +SF
Sbjct: 301 TVNIHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTGVMHNRVRMVAASFLT 360
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +PE+Q KFDP G
Sbjct: 361 KNLLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFRVFNPEVQREKFDPHG 420
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
+YVR+W+PE WD +YP+P++DL R +A
Sbjct: 421 DYVRRWVPE------------WDT-------------ADYPEPLVDLAETR----RAALA 451
Query: 484 MWEMEAA 490
WE A
Sbjct: 452 AWETVKA 458
>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
Length = 477
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 172/483 (35%), Positives = 251/483 (51%), Gaps = 14/483 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW RRDLR+ D PALA AA+ + PVY P E G S WWL SL+ L
Sbjct: 4 ALVWLRRDLRLADQPALARAAQTAERLAPVYIHAPAETRPTV-GAASCWWLHHSLAALDA 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L S G+ L L T + L A V + +P + ++ ++ E L +G+
Sbjct: 63 ELASAGSRLCL-DTGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEALAAIGVR 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI-DGC 183
++ LL +P + + G + F +W + ++ Q++P PP L I +
Sbjct: 122 LEVLADGLLTDPSAVRNRSGTPYRAFTPFW-RSVRAQLDPPRPAPPPALPGLPEAIPEPQ 180
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+E LGL L W PG + A + L F++ Y + R TS L
Sbjct: 181 PLETLGLLPRIRWDEK--LAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQPGTSRL 238
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S+R V+ + A++ +++ FL +G RE++ +L + P
Sbjct: 239 SPHLHFGEISIRAVWHA-----VRDAQQMQPAAADALDTFLAELGWREFAYHLLWQQPEL 293
Query: 304 HERPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
H P+ FPW D AWR+G TG PLVDAGMRELWATGW+HNR+R++V SF
Sbjct: 294 HRTPIDERFSRFPWREDPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNRVRMVVGSF 353
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK L LPW+ G +F DTL+D DL + +GWQ++SG D R+ +P QG +FDP
Sbjct: 354 LVKNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPVRQGERFDP 413
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+G+YVR W+PE+A +P IH PW AP + G+ LG +YP+P++DL R+ A
Sbjct: 414 DGDYVRHWVPEVAGLPKSHIHQPWAAPADARARCGLHLGRDYPEPLVDLATSRKEALAAF 473
Query: 482 FKM 484
+
Sbjct: 474 HAL 476
>gi|53719958|ref|YP_108944.1| DNA photolyase [Burkholderia pseudomallei K96243]
gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
Pakistan 9]
gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
gi|386861077|ref|YP_006274026.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026b]
gi|418380478|ref|ZP_12966443.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354a]
gi|418537248|ref|ZP_13102889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026a]
gi|418540357|ref|ZP_13105904.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258a]
gi|418546604|ref|ZP_13111810.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258b]
gi|418552828|ref|ZP_13117676.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354e]
gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
Pakistan 9]
gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
gi|385350248|gb|EIF56796.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026a]
gi|385362092|gb|EIF67936.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258a]
gi|385364061|gb|EIF69807.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258b]
gi|385372519|gb|EIF77626.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354e]
gi|385377308|gb|EIF81897.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354a]
gi|385658205|gb|AFI65628.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026b]
Length = 486
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 254/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 69 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 187
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 188 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 246
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 247 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 302 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 362 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 422 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 481
Query: 481 I 481
Sbjct: 482 F 482
>gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
Length = 486
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 254/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 69 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDARGIA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 187
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 188 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 246
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 247 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 302 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 362 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 422 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 481
Query: 481 I 481
Sbjct: 482 F 482
>gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3]
gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3]
Length = 479
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 266/480 (55%), Gaps = 21/480 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DN AL AA G V P+Y +E G WWL SL+ L
Sbjct: 8 VIVWFRKDLRLADNLALLAAVEHGGPVIPIYI---RETSSGPLGGAQEWWLHHSLASLSA 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G+ L+L ++ + L I+ A V++N Y+P + D +IKE L + G++
Sbjct: 65 ALEKCGSRLLL-RSGNAEETLRRLIAETGADAVLWNRRYEPTGMATDKAIKEALGDDGLT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+ G LL+EP + + G + + +W + L+ EP + + ++A T
Sbjct: 124 VRSFAGHLLHEPSRVQTKSGGPYRVYTPFW-RALEGSEEPHTPADAPQSLKAPETWSKSE 182
Query: 185 IED----LGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D L ++ + K + + W+PG + A + L +F++ L Y + R ++T
Sbjct: 183 KLDDWKLLPVKPDWAKDFSEI----WTPGENAAREKLDDFIDGALKGYEEGRDFPAKDAT 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLL+P+L GE+S V+ K + ++ F + + RE+ +L F+F
Sbjct: 239 SLLAPHLALGEISPAAVWHA--TKGL-----SRHIASNDISRFRKELVWREFCYHLLFHF 291
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P E+ + F W D +F AW +G TGYP+VDAGMR+LW G +HNR+R+IV+S
Sbjct: 292 PELDEKNWNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVAS 351
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P +QG KFD
Sbjct: 352 FLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFD 411
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
EG+YVR+++PEL R+ ++IH P++AP VLK AG+ELG YP PI+D RER A
Sbjct: 412 AEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYPLPIVDHGKARERALAA 471
>gi|403519410|ref|YP_006653544.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BPC006]
gi|403075053|gb|AFR16633.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BPC006]
Length = 497
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 254/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 21 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 79
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 80 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 138
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 139 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 198
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 199 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 257
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 258 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 312
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 313 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 372
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 373 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 432
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 433 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 492
Query: 481 I 481
Sbjct: 493 F 493
>gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
MSHR346]
gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
MSHR346]
Length = 486
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 254/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERVGGRPLGG-AARWWLHGSLRALGA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 69 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 187
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 188 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 246
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 247 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 302 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 362 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 422 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 481
Query: 481 I 481
Sbjct: 482 F 482
>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 508
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 174/486 (35%), Positives = 258/486 (53%), Gaps = 19/486 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
+IVW R DLR+ DNPAL AA G V +E P G +RWWL SLS L +
Sbjct: 24 SIVWLRDDLRVADNPALHAAVERGEPIVVLYVLDEESDGIRPLGGAARWWLHMSLSRLAE 83
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LG++LVL + ++ + + + I A V++N Y + D +IK+ L + G+
Sbjct: 84 SLRELGSDLVLRRGKAA-DVVDDLVREIGAGAVLWNRRYGGAEIAVDTAIKKDLGDRGLD 142
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGC 183
V+S+ G LL EPW + +++G F + +W K Q + EP LP P L
Sbjct: 143 VRSFQGSLLVEPWTVTNKQGEPFRVYTPFW-KAAQEREEPRKPLPAPKELDAPREAPRSD 201
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
++ GL ++ A L PG + + L +FV L Y R + +TS L
Sbjct: 202 DLDGWGLL-PTKPDWAAGLRESCDPGEAAGLQRLEDFVHHELEDYAAQRDEPAAMTTSRL 260
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE-SVTFFLRAMGLREYSRYLCFNFPF 302
S YL +GE+S +V+ +I + + G E + T FL +G RE+S +L ++ P
Sbjct: 261 SAYLRWGEVSPFQVWH-----RIQRTRGKKVGGDEVNATKFLSELGWREFSYHLLYHQPD 315
Query: 303 THERPLLSNLKYFPWHADLG-NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
R + FPW AW++G TG PLVDAGMR LW G +HNR+R++V+SF
Sbjct: 316 LATRNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKDGHLHNRVRMVVASF 375
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KFDP
Sbjct: 376 LIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPVLQGQKFDP 435
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLN-------YPKPIIDLDLGR 474
GEY+R ++PELA P + +H PW A +++ +A + YP PI+DL R
Sbjct: 436 SGEYIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGGLAAYPAPIVDLKESR 495
Query: 475 ERLTQA 480
+R A
Sbjct: 496 QRALAA 501
>gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 253/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y D++++ L GI+
Sbjct: 69 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAPRAVDNAVQTALDAQGIA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 187
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 188 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 246
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 247 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 302 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 362 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 422 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDA 481
Query: 481 I 481
Sbjct: 482 F 482
>gi|402566030|ref|YP_006615375.1| deoxyribodipyrimidine photo-lyase [Burkholderia cepacia GG4]
gi|402247227|gb|AFQ47681.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cepacia GG4]
Length = 492
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 177/488 (36%), Positives = 240/488 (49%), Gaps = 18/488 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G EG P G +RWWL SL+ L
Sbjct: 10 AIVWFRDDLRVTDQPALTRAVASGRPLVCVFVDDTGEGAGRPLGGAARWWLHGSLAALDA 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + A V +N Y D ++K L G+
Sbjct: 70 ALARHGGRLLLLRGDARRE-IERVAHDTGAAAVYWNRRYAQPQRDADAALKASLKARGLE 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW-----DKCLQMQM-EPASI-LPPWRLVQAA 177
V+S NG LL EPWE+ G F F AYW D+ + + EPA I PW A
Sbjct: 129 VESSNGSLLNEPWEVLTGAGTPFQVFTAYWRAVRRDRTVDAPLPEPARIAFHPW----PA 184
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGW-SPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+ D L W +P + A L F + L Y R +
Sbjct: 185 DVRERALALDALALRPHAPDWAGGLRDAWPTPDEAGAHARLDAFSVESLAGYADTRDRPD 244
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+TS LSP+L FG LS R+V+Q + ++ FL +G RE+S L
Sbjct: 245 QPATSRLSPFLRFGNLSPRQVWQAVQGAAQADGAACAAGAEK----FLSELGWREFSYTL 300
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++FP + PW D +AW++G TGYPLVDAGMRELW TGW+HNR+R+
Sbjct: 301 LYHFPALATDSFRAQFNAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRVRM 360
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+V+SF VK LL+ WR G +F DTL+DAD + WQ+++G D R+ +P +QG
Sbjct: 361 VVASFLVKHLLIDWRAGEAWFHDTLVDADPANNPANWQWVAGCGADAAPYFRIFNPVMQG 420
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDP G YVR+W+PELA + IH PW+A P L AAGV L ++YP P++D R R
Sbjct: 421 RKFDPHGAYVRRWVPELAGLDAATIHAPWEASPVELAAAGVRLDIDYPAPLVDHAGARGR 480
Query: 477 LTQAIFKM 484
A+ +
Sbjct: 481 ALDALAAL 488
>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
Length = 483
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/485 (34%), Positives = 248/485 (51%), Gaps = 29/485 (5%)
Query: 5 RTIVWFRRDLRIEDNPALAAAA----RDGSVFPVYTWCPKEEGQFYPGR-VSRWWLKQSL 59
R ++W +LR+ DNPAL AA +G V P Y K+ +P + + WWL SL
Sbjct: 2 RILLWLSNNLRLSDNPALHAAVDSADANGEVLPAYI---KDTANPWPIQGAAAWWLHHSL 58
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALL-ECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
+ S+K+ G L LF E A L+ E IS K V + ++P + +I +
Sbjct: 59 AAFTNSIKNKGGVLSLF--EGDPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWC 116
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA-A 177
+ I + + G LL P +++G F F Y+ L P + P L + A
Sbjct: 117 KQHNIECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAALATHTIPRAKPIPSNLAKVWA 176
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
S+ L+ + W PG A K L E +E + Y ++R
Sbjct: 177 AKKLPKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDFPAV 236
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
+ TSLLS +L FGE+S R+++Q + +G E FLR + R++S L
Sbjct: 237 DGTSLLSAHLRFGEISPRQIWQQV---------ATQMDG-EQCAPFLRQLMWRDFSYALL 286
Query: 298 FNFPFTHERPLLSNLKYFPWHAD-----LGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
++P ++ + FPW AW+ G TGYP+VDAGMR+LW TGW+HN
Sbjct: 287 HHWPHIPQQAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHN 346
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R+IV+SF K L + W G K+FWDTL+DADL + GWQ+++G D R+ +P
Sbjct: 347 RVRMIVASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNP 406
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLN--YPKPIIDL 470
+QG KFD +GEY++ W+PELA +P ++IH PW AP ++L+ AG+ LG N YP PI+D
Sbjct: 407 VLQGEKFDKQGEYIKTWVPELAALPAKFIHAPWLAPQDILQTAGISLGNNSTYPLPIVDH 466
Query: 471 DLGRE 475
RE
Sbjct: 467 KYARE 471
>gi|389772571|ref|ZP_10192146.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
gi|388429582|gb|EIL86900.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
Length = 471
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 254/477 (53%), Gaps = 17/477 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+V FRRDLR+ DNPA +AA V PVY P E+G + G SRWWL SL+ L +
Sbjct: 4 ALVVFRRDLRLADNPAWSAACAAHAQVIPVYIHAPGEDGPWSIGSASRWWLHHSLAALDR 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ L L + TL L E + A V +N LY+P + RD IK L E G +
Sbjct: 64 RLRAHHVALHL-RQGDTLEVLRELVRRSGADAVYWNRLYEPALIERDTRIKSALREQGTA 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V S+ G L EPW+I ++ + F YW K L+ ++P LP +V + G
Sbjct: 123 VHSHPGTLWCEPWQIATQQDAPYKVFTPYWRK-LRTLLQPVEPLPE-PVVPGWQALSGSL 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
L ++ L W PG A ++L F + + Y R + TS LS
Sbjct: 181 PLSA-LALLPRIGWDSGLAETWQPGEDGAHELLEIFADDAIGDYAHARDLPARHGTSRLS 239
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S R++ L + A+ + + + + +LR +G RE++ +L ++FP T
Sbjct: 240 PHLHFGEISPRQIHFELDRR----ARAIDAKRRPDIEPYLRELGWREFAHHLLYHFPHTP 295
Query: 305 ERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
F W A D + W+ GRTG PLVDAGMRELW TGW+HNR+R+IV+S
Sbjct: 296 TDNFNPRFDGFRWAAADQSLIERWQHGRTGIPLVDAGMRELWHTGWMHNRVRMIVASLLT 355
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L W+ G ++FWDTL+DADL + LGWQ+++G D R+ +P Q KFDP+G
Sbjct: 356 KNLRQHWQHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPVTQAKKFDPDG 415
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+R+WLPELA P +H PW +LK +G YP P+IDL R+R A
Sbjct: 416 TYLRRWLPELAAAPLALLHEPWKD-EALLKRSG------YPAPMIDLGQSRQRALDA 465
>gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
Length = 534
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 183/481 (38%), Positives = 253/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWF DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 58 AVVWFCDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPL-GGAARWWLHGSLRALGA 116
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 117 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 175
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 176 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 235
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 236 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 294
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 295 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 349
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 350 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 409
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 410 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 469
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 470 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYDAARRRALDA 529
Query: 481 I 481
Sbjct: 530 F 530
>gi|387887266|ref|YP_006317565.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386872082|gb|AFJ44089.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 464
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 155/479 (32%), Positives = 257/479 (53%), Gaps = 29/479 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ +E G S+ WL SL+
Sbjct: 1 MSKKIAIHWFRQDLRLADNPALHQASQTDETITIFILDENQE----IGGASKLWLSHSLN 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L KSL +L F + + L + + I T +N YD S+ RD IK+ L E
Sbjct: 57 SLN---KSLDNKLNFF-SGNPLEIIKKLIKENNITDFYWNRCYDKYSINRDTQIKQFLQE 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP----WRLVQA 176
I+ S+NG LL EP + + G + + ++ + ++++ ++I+ P + ++A
Sbjct: 113 QNINASSFNGSLLIEPSQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKLEA 172
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
A +D + + L ++ + W G + ++L EF++ + Y R +
Sbjct: 173 AADLDSLKLLEPKLSWQN-------IIDQWQIGEDASHQILEEFLDNKVKEYKTARDFMS 225
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+STS LSPYLHFGE+S ++F + + E++F ++ + R++S Y
Sbjct: 226 TDSTSKLSPYLHFGEISPNQIFNAVQNLDYIGNNEKHF---------IKELVWRDFSYYQ 276
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+ +P H + + F W + K W+ G+TG P+VDAGMRELW TG++HNR+R+
Sbjct: 277 IYYYPELHNKNINQKFDNFEWDNNPTLLKKWQTGQTGIPIVDAGMRELWQTGYMHNRVRM 336
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L+ W++G ++F+DTL DAD+ + WQ+++G D R+ +P +Q
Sbjct: 337 IVASFLIKNCLIHWKYGERWFFDTLFDADIASNNTNWQWVAGCGLDAAPYFRIFNPVLQS 396
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KF+ EY+R+++PEL +P + I PW+ +L+ AGV LG NYPKP+IDL R+
Sbjct: 397 EKFEA-YEYIRKYVPELKFLPNKLIAKPWETSELILQEAGVMLGDNYPKPVIDLKKSRD 454
>gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
Length = 486
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 183/481 (38%), Positives = 253/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWF DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 10 AVVWFCDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 69 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 187
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 188 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 246
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 247 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 301
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 302 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 361
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 362 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 421
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 422 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYDAARRRALDA 481
Query: 481 I 481
Sbjct: 482 F 482
>gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
Length = 474
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 168/487 (34%), Positives = 237/487 (48%), Gaps = 27/487 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
TIVW R DLR++DNPALA AA G V +E P G ++WWL SL L
Sbjct: 4 TIVWLRDDLRLDDNPALADAAAMGHPLTVVYILDEESPGVRPLGGAAKWWLHHSLVSLAG 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L++ G+ LVL + S + E + AT + +N Y D +K E G+
Sbjct: 64 GLEAAGSRLVL-RRGSAAGIIQELAAETGATHLRWNRRYGGPERSIDAGVKAWAGEQGLD 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
S+ L++EPW + G + F +W CL+ P L AG DG
Sbjct: 123 AASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPHPAGHGDGGP 182
Query: 185 IEDLGLED----ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L+ +A L W+PG + A L +F++ + Y R + G T
Sbjct: 183 PQSDDLDSWALLPRTPDWSAGLAEQWTPGEAGAHSRLKDFLDGPVEEYGTGRDRPGVEGT 242
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFLRAMGLREYSRYLCF 298
S LSP+L FGE+S +++ L E F + V F +G RE+ L +
Sbjct: 243 SRLSPHLRFGEISPFRIWHAL---------RERFPRQAPADVGIFRSELGWREFCWQLLY 293
Query: 299 NFPFTHERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
P R + F W +AW+QGRTGYPLVDAGMR+LW TGW+HNR+R+
Sbjct: 294 ENPELASRNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRMA 353
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL WR G +FWDTL+DAD + WQ+++GS D R+ +P Q
Sbjct: 354 AASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNPVTQSK 413
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFD G Y+R+++PE+A + + IH PW AP EL YP+P++ L RER
Sbjct: 414 KFDAAGRYLREFIPEIANLSEKEIHEPWKAP---------ELAAGYPEPLVGLPESRERA 464
Query: 478 TQAIFKM 484
+ K+
Sbjct: 465 LETYQKL 471
>gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
Length = 497
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 183/481 (38%), Positives = 253/481 (52%), Gaps = 13/481 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWF DLR+ D+PAL AA G V VY + + G+ G +RWWL SL LG
Sbjct: 21 AVVWFCDDLRVSDHPALMRAAESGRPVIGVYVFDERAGGRPLGG-AARWWLHGSLRALGA 79
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +LG L L + + ++ +A+ A V ++ Y + D++++ L GI+
Sbjct: 80 ALAALGGTLALLRGDEH-DTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 138
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTI 180
V+++N LL+EP ++ + G + F AYW ++ + + P RL + AA
Sbjct: 139 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPRRLNGGALPAALAR 198
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ LGLE + L W G A + L FV+ L Y R + G ST
Sbjct: 199 QCVALDALGLEPTGPDWAGGLRD-AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAST 257
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPY+ FG LS R+ LW A + + FL +G RE+ +F
Sbjct: 258 SRLSPYVRFGNLSARQ----LWHAAAD-AYAHGAATQADLDKFLSELGWREFGWTQLHHF 312
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR+R++ +S
Sbjct: 313 PDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCAS 372
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 373 FLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFD 432
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G YVR+W+PELA +P IH PW AP L AAGV LG YP PI+ D R R A
Sbjct: 433 PDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYDAARRRALDA 492
Query: 481 I 481
Sbjct: 493 F 493
>gi|424894750|ref|ZP_18318324.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178977|gb|EJC79016.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 482
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 246/484 (50%), Gaps = 19/484 (3%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
N I+WFR+DLR++DN AL AA G V P+Y G G WWL SL
Sbjct: 5 AANPVILWFRKDLRLDDNQALNAAHLSGRPVIPLYI-SEPAAGAGPLGAAQAWWLHHSLE 63
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++L+ +LVL E+ L L IS A V +N YDP D IK +L +
Sbjct: 64 ALDRALRKRQGQLVLASGEA-LEVLRAFISESGAAAVFWNRRYDPSCTTIDIRIKHELKK 122
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASIL-PPWRLVQAAGT 179
I V+S+ G LL+EP + G + + +W + L+ E A L P +L AA
Sbjct: 123 QAIEVRSFGGQLLHEPSRLMTGSGTPYRVYTPFW-RALEGAGELALPLEAPVKLQLAAQL 181
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+E L + G W+PG L FVE L Y +NR +
Sbjct: 182 PKSERLESWKLLPTKPDWARDF-GDLWTPGEQGGRDKLRAFVEDTLDGYRENRDYPAKQA 240
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK---ESVTFFLRAMGLREYSRYL 296
TS+LSP+L GE+S ++ W + + F + + RE+S +L
Sbjct: 241 TSMLSPHLALGEISPARI----------WDATRGLSKRVPAADIVHFRKEIAWREFSYHL 290
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
F+FP F W +F+AW +G TGYP+VDAGMR+LW GW+HNR+R+
Sbjct: 291 LFHFPRLASSNWNDRFDGFEWRNADEDFEAWCRGLTGYPIVDAGMRQLWRHGWMHNRVRM 350
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG
Sbjct: 351 IVASFLIKDLMVDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQG 410
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
FDP+G+YVR +PEL + ++IH P++AP ++L AG+ LG YP+PI+D R R
Sbjct: 411 QTFDPDGDYVRAHVPELRELAAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNR 470
Query: 477 LTQA 480
A
Sbjct: 471 ALAA 474
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/479 (34%), Positives = 251/479 (52%), Gaps = 17/479 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I+WFR+DLR++DN AL AA G + +Y P+ G G WWL SL L
Sbjct: 9 VILWFRKDLRLDDNKALNAAHFSGRPIISLYIREPEAAGTGPLGAAQAWWLHHSLEALDG 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ L L E+ L L I A V +N YDP + D I+ +L + I
Sbjct: 69 SLRKRRGGLSLASGEA-LEVLRSLIKQSDADAVFWNRRYDPPGISIDARIEHELEKRAIE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+ G LL+EP ++ G + + +W + L+ +E + P +L A+
Sbjct: 128 VKSFGGQLLHEPSQLMTGSGTPYRVYTPFW-RALESSIEAEPLDIPSKLQLASKLPGSEK 186
Query: 185 IEDLGL-EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+E L + + +SN +PG A + L F+E L Y +NR +TS+L
Sbjct: 187 LESWKLLSTQPDWASN--FADLCTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSML 244
Query: 244 SPYLHFGELSVRKVFQCL--WMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
SP+L GE+S +++ K + A + F + + RE+S +L +FP
Sbjct: 245 SPHLALGEISPARIWDATRGLSKHVPAA---------DIVHFRKEIAWREFSYHLLAHFP 295
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
F W +FKAW +G TGYP+VDAGMR+LW GW+HNR+R+I +SF
Sbjct: 296 RLATANWDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASF 355
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K L++ WR G +F DTL+DAD + WQ+++GS D R+ +P +QG KFDP
Sbjct: 356 LIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDP 415
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+G++VR +PEL ++ ++IH P++AP +VL AA V LG YP+P++D R+R A
Sbjct: 416 DGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRALAA 474
>gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD]
gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria
AMMD]
Length = 525
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 247/484 (51%), Gaps = 10/484 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D PAL A G + VY + G +RWWL +L+ L
Sbjct: 35 AVVWFRDDLRVTDQPALTRAVASGRPLVCVYVDDTGDGAGRALGGAARWWLHGALAALDA 94
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G+
Sbjct: 95 ALARHGGHLLLLRGDAQRE-IERIVHDTGAAAVYWNRRYAQPQRDADAALKASLKARGLE 153
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV----QAAGTI 180
V+S NG LL EPWE+ G F F AYW + + A + P R+ AA
Sbjct: 154 VESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVMAPLPEPERIAFHPWPAAVRE 213
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ L L + + L +P + A L FV L Y R + G +T
Sbjct: 214 RALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHASLAGYADTRDRPGEPAT 273
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FG +S R+V+ + ++ FL +G RE+S L ++F
Sbjct: 274 SRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEK----FLSELGWREFSHVLLYHF 329
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + PW D +AW++G TGYPLVDAGMRELW TGW+HNR+R++V+S
Sbjct: 330 PALATDNFRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRVRMVVAS 389
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G ++F DTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 390 FLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVTQGRKFD 449
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+GEYVR+W+PELA + IH PW+A L AAGV LGL+YP PI+D D R R A
Sbjct: 450 PQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHDGARRRALDA 509
Query: 481 IFKM 484
+ +
Sbjct: 510 LATL 513
>gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
Length = 486
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 184/487 (37%), Positives = 249/487 (51%), Gaps = 25/487 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ D+PALA AA G V VY + + G G +RWWL SL L
Sbjct: 10 AVVWFRDDLRVSDHPALARAAESGRPVIGVYVF-DERAGGRALGGAARWWLHGSLRALDA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L LG LVL + + + ++A+ A V +N Y D++++ L ++
Sbjct: 69 ALAGLGGRLVLLRGDEA-DTFVSFVAALGAGAVYWNRRYAFAQRALDNAVQTALDARRVA 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ----------MQMEPASILPPWRLV 174
V+++N LL+EP +I + G + F AYW L+ + LP
Sbjct: 128 VETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPPLAAPRRLNGGALPE---- 183
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
A ++ LGLE + L W G A +L FV+ L Y R +
Sbjct: 184 --ALARRRVELDALGLEPTRPDWAGGLRD-AWRFGEDAAHSLLRAFVDSRLGGYATERDR 240
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
G STS LSPY+ FG LSVR+++Q + A + + FL +G RE+
Sbjct: 241 PGIASTSRLSPYVRFGNLSVRQIWQA-----AVDAHAHRAATQADLDKFLSELGWREFCW 295
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ FP R L L PW D AWR+G TGYP VDAGMRELWATGW+HNR
Sbjct: 296 AQLYRFPDLPRRNLRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMHNRA 355
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R++ +SF VK LL+ WR G +FWDTL+DAD + WQ+++G D R+ +P
Sbjct: 356 RMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVA 415
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG KFDP+G YVR+W+PELA +P IH PW APP L AAGV LG YP P++ D R
Sbjct: 416 QGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVVAHDAAR 475
Query: 475 ERLTQAI 481
R A
Sbjct: 476 RRALDAF 482
>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
Length = 519
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/469 (35%), Positives = 237/469 (50%), Gaps = 10/469 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G + V+ G +RWWL SL+ L
Sbjct: 37 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 96
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G++
Sbjct: 97 ALARHGGRLLLLRGDAQRE-IERVVGDTGAAAVYWNRRYAQQQRDADAALKASLKARGVT 155
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV----QAAGTI 180
V+S NG LL EPWE+ G + F AYW + + A + P R+ A
Sbjct: 156 VESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPERIAFHPWPKAVRD 215
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ L L + + L +P + A L F+ L Y R + +T
Sbjct: 216 RALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTSLAGYADARDRPDRPAT 275
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FG +S R+V W A FL +G RE+S L ++F
Sbjct: 276 SRLSPFLRFGNVSPRQV----WHAVQGAANAGGAAYAAHADKFLSELGWREFSYTLLYHF 331
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + PW D +AW++GRTGYPLVDAG+RELW TGW+HNR+R++V+S
Sbjct: 332 PALATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVAS 391
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G +F DTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 392 FLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKFD 451
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P G YVR+W+PELA + IH PW+A P L+AAGV LG++YP P+++
Sbjct: 452 PGGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGVDYPAPLVE 500
>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
Length = 531
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 164/471 (34%), Positives = 235/471 (49%), Gaps = 14/471 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G + V+ G +RWWL SL+ L
Sbjct: 49 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFIDDTGAGAGPALGGAARWWLHGSLARLDT 108
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G++
Sbjct: 109 ALARHGGRLLLLRGDAQRE-IERVVGDTGAAAVYWNRRYAQPQRDADAALKASLKARGVT 167
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV-----QAAGT 179
V+S NG LL EPWE+ G + F AYW + + A + P R+ QA
Sbjct: 168 VESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPERIAFHPWPQAVRD 227
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGW-SPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ + L W +P + A L F+ L Y R +
Sbjct: 228 RALALDALALRPHAPDWAGG--LRDAWPAPDEAGALARLDTFLTTSLAGYADARDRPDRP 285
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS LSP+L FG +S R+V+ + A FL +G RE+S L +
Sbjct: 286 ATSRLSPFLRFGNVSPRQVWHAVQGA----ANAGGAVYAAHADKFLSELGWREFSYTLLY 341
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP + PW D +AW++GRTGYPLVDAG+RELW TGW+HNR+R++V
Sbjct: 342 HFPALATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVV 401
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K LL+ WR G +F DTL+DAD + WQ+++G D R+ +P QG K
Sbjct: 402 ASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQK 461
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
DP+G YVR+W+PELA + IH PW+A P L+AAGV LG++YP P+++
Sbjct: 462 CDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVE 512
>gi|365880713|ref|ZP_09420069.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
gi|365291224|emb|CCD92600.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
Length = 422
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/423 (37%), Positives = 231/423 (54%), Gaps = 10/423 (2%)
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
+ L L++LG +LV+ + + L + +A V +N + S++ L
Sbjct: 1 MRALRAELQALGTDLVIRRGPAA-KVLGQLARETEAGAVYWNDVAQAGPRGVAASVEAGL 59
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAA 177
++G++ + + DLL +P + + G F +W + L + +PA LP P RL A
Sbjct: 60 GDIGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALG-DPAKPLPTPVRLPPVA 118
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G I I +L LE + L W PG A + L F+E + Y +R +
Sbjct: 119 G-IASLGIHELALEPTRPDWAGGLRTT-WQPGERTAQQRLRGFLESAVSSYAADRDRPDI 176
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
++TS LSP+L FGE+S R+++ +A EE + + FL +G RE+SR+L
Sbjct: 177 DATSRLSPHLRFGEISPRQIWHA-----ARFAAEERPALAKGIDKFLSEVGWREFSRHLL 231
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+N P R L + FPW D AW++G+TGYP+VDAGMRELW TG +HNR+R++
Sbjct: 232 YNNPDLATRNLQPSFDPFPWTQDDAALAAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMV 291
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+S VK LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG
Sbjct: 292 AASLLVKHLLIDWRQGEQWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVFNPVLQGE 351
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFD G YVR+W+PEL+R+P IH PW A P L AGV LG +YP PI+D GRER
Sbjct: 352 KFDANGSYVRRWVPELSRLPAGLIHQPWAAKPLELAEAGVTLGRSYPAPIVDHKHGRERA 411
Query: 478 TQA 480
A
Sbjct: 412 LAA 414
>gi|428173312|gb|EKX42215.1| hypothetical protein GUITHDRAFT_74169 [Guillardia theta CCMP2712]
Length = 523
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 167/491 (34%), Positives = 266/491 (54%), Gaps = 30/491 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DNPAL AA+ G +V PV+ +++ + G +++WL QSL+ L +
Sbjct: 22 VIVWFRQDLRLHDNPALLFAAQSGRNVIPVFVHVEQDDENWLLGGAAKFWLHQSLTKLSE 81
Query: 65 SL-KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
SL + G++L++ TLA LL+ + A+ + FN +Y+P L RD I E L G+
Sbjct: 82 SLERKYGSKLIIRAGSDTLAGLLDVMMETGASTLCFNRVYEPWKLARDAKIVETLTMNGL 141
Query: 124 SVQSYNGDLLYEPWEIYDERG----HAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ SY +L+EP E+ + + F + + + C ++ + PP +L
Sbjct: 142 TCSSYKAVVLFEPLEVVPDSKEGLMYGFGSVGFFLNACDGKEIS-DPLPPPEQLRPPRAW 200
Query: 180 IDGCSIEDLGLEDESEKSSNALL--GRG----WSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
SI DL L + + ++ +G W G A K L EFV + +++ RQ
Sbjct: 201 PGSLSIGDLRLYVMPCRRNGQVVDWAKGMREFWEFGEEGALKALEEFV-RFGCHHFEGRQ 259
Query: 234 KLGGNS--TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
+ + T+++SPY+ FGELS R++F + ++ AK FLR + R+
Sbjct: 260 RFRADRKYTAVISPYVRFGELSPRRIFHEIVVRHRYKAKT-----------FLRRLAWRD 308
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ + + FP + PL + W D +AW++GRTG+PLVDA MR+LW TGW+
Sbjct: 309 LAYWCLWKFPTMADHPLRPQYAHQTWDYDQKQLRAWQRGRTGFPLVDAAMRQLWVTGWMP 368
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
N +R +V+ F ++ + + W G K+F DTL+DAD+ + WQ +G + +
Sbjct: 369 NYMRHVVAGFLIEHMNMHWVDGEKWFHDTLVDADVAINAYMWQ--NGGHSGLDQWNFVMH 426
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII-DL 470
P DPEG+YVR+W+PEL+++P E+IH PW+AP +L ++GV LG NYP II DL
Sbjct: 427 PVFAAKSCDPEGDYVRRWVPELSKLPPEYIHCPWEAPVTLLASSGVALGRNYPHRIIADL 486
Query: 471 DLGRERLTQAI 481
+ R R A+
Sbjct: 487 EGARTRSLAAV 497
>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS 278]
gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 278]
Length = 415
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/415 (36%), Positives = 226/415 (54%), Gaps = 8/415 (1%)
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
++SLG++LV+ + + L + A+ V +N + S++ L +G++
Sbjct: 1 MQSLGSDLVIRRGPAA-QVLGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGVAS 59
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ + DLL +P + + G F +W + L + P + P RL + G ++
Sbjct: 60 RVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPARLPMVP-DVTGLTV 118
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+DL LE + L W G A + L F+E + Y +R + ++TS LSP
Sbjct: 119 DDLRLEPTKPDWAGGLRAT-WQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSP 177
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L FGE++ R+++ +A EE + + FL +G RE+SR+L +N P
Sbjct: 178 HLRFGEITPRQIWHA-----ARFAAEERPAQAKGIDKFLSEIGWREFSRHLLYNNPDLAS 232
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
R L + FPW D AW++GRTGYP+VDAG+RELW TG +HNR+R++ +S VK
Sbjct: 233 RNLQPSFDPFPWVQDDAALAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKH 292
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P +QG KFD G Y
Sbjct: 293 LLIDWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSY 352
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
VR+W+PELAR+P IH PW A P L AGV LG +YP PIID GRER A
Sbjct: 353 VRRWVPELARLPAGVIHQPWAAKPLELAEAGVTLGRSYPTPIIDHKQGRERALAA 407
>gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
11-1]
gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
11-1]
Length = 476
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 261/476 (54%), Gaps = 28/476 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSV-FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR++D+PAL AA G V PVY P EEG + PG S W ++SL+ L +
Sbjct: 4 ALVWFRDDLRLDDHPALRAALDRGLVPVPVYIHAPDEEGAWAPGAASDAWRRRSLAALAE 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G+ L++ S L L + A V++N Y+P RD IK +L + G+
Sbjct: 64 ALAQRGSRLLMLHGPS-LGTLQALAALTGAEAVLWNRRYEPHIEARDTRIKRQLRQAGLH 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEP----ASILPPWRLVQAAGT 179
+S+NG LL+EPWEI ++G + F +W L Q ++ P ++ LP AG
Sbjct: 123 AESFNGSLLFEPWEIETKQGDPYRVFTPFWKNALAQWRLRPLWEASARLPS---PDQAGA 179
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
DG ++ + E+ +A +PG + A L F+ L Y + R ++ +
Sbjct: 180 PDGRHLD--AIVPETRPDWDAGFWDEATPGEAGARARLQAFLAHGLEGYAQARDRMAVDG 237
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS +LHFGE+SV++V + ++ E F L +G RE++ ++ +
Sbjct: 238 TSRLSAHLHFGEVSVQRVAAAVLAAEVPAPDRERF---------LAELGWREFAHHVMHH 288
Query: 300 FPFTHERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P ++ L + F W L AW +GRTG P++DAGMR+LW TGW+HNR+R+IV
Sbjct: 289 YPHVVDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMHNRVRMIV 348
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+S+ K L L WR G ++FWDTL+DADL + GWQ+ +G+ D R+ +P Q K
Sbjct: 349 ASWVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFNPVSQAMK 408
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLG 473
FDP+GEY+ +WLPELA +P PW+ P++L+ L YP+ P +DL G
Sbjct: 409 FDPQGEYIARWLPELAALPLPARFAPWEH-PDLLR----RLAPRYPRQPQVDLAQG 459
>gi|418406735|ref|ZP_12980054.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
gi|358007228|gb|EHJ99551.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
Length = 479
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 263/480 (54%), Gaps = 21/480 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR+DLR+ DN AL AA G V P+Y +E G WW+ SL+ L
Sbjct: 8 VIVWFRKDLRLADNLALLAAVEHGGPVIPLYI---RETSSGPLGGAQEWWVHHSLASLSA 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G+ L+L ++ + L I+ A V++N Y+P + D ++KE L + G++
Sbjct: 65 ALEKCGSRLLL-RSGNAEETLRRLIAETGADAVLWNRRYEPTGMATDKTLKEALGDDGLT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+ G LL+EP + + G + + +W + L+ EP + + ++A T
Sbjct: 124 VRSFAGHLLHEPSRVQTKSGGPYRVYTPFW-RALEGGEEPHTPADAPQSLKAPETWPKSE 182
Query: 185 IEDLGLEDESEKSSNALLGRG----WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
L+D RG W+PG + A + L +F++ L Y + R ++T
Sbjct: 183 ----KLDDWKLLPVKPDWARGFSEIWTPGENAAREKLDDFIDGALKGYEEGRDFPAKDAT 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLL+P+L GE+S V+ K + ++ F + + RE+ +L F+F
Sbjct: 239 SLLAPHLALGEISPAAVWHA--TKGL-----SRHIASNDISRFRKELVWREFCYHLLFHF 291
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P E+ + F W D +F AW +G TGYP+VDAGMR+LW G +HNR+R+IV+S
Sbjct: 292 PELDEKNWNDSFDAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVAS 351
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G K+F DTL+DAD + WQ+++GS D R+ +P +QG KFD
Sbjct: 352 FLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFD 411
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
EG+YVR+++PEL ++ ++IH P++AP VLK AG+ELG YP PI+D RER A
Sbjct: 412 AEGDYVRRFVPELEKLERKYIHKPFEAPKEVLKKAGIELGKTYPLPIVDHGKARERALAA 471
>gi|340777154|ref|ZP_08697097.1| Deoxyribodipyrimidine photo-lyase [Acetobacter aceti NBRC 14818]
Length = 477
Score = 265 bits (677), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 177/482 (36%), Positives = 241/482 (50%), Gaps = 22/482 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + I+WFR D R+ DN AL+AAARDG+ T E Q G WW ++
Sbjct: 1 MSISPAILWFREDFRLADNAALSAAARDGAPVLCITILEPEPQQ---GAAHDWWRDGAIR 57
Query: 61 YLGQSLKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L +L+ L + K E + AL + A A+ V +N YDP D +IK +L
Sbjct: 58 ALDAALQEKDGRLHVLRGKAEDLVPALAK---ACNASAVHWNRRYDPTGRAIDTAIKTQL 114
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA- 177
G S+ G LL+EPW I + F F +W ++ + P L A+
Sbjct: 115 KSTGTEAYSFPGALLHEPWTIRTQADKPFQVFTPFWRTARKLGDPRPPLSAPDTLKFASF 174
Query: 178 ---GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ E+ L S + A W PG A + L FVE L Y + R
Sbjct: 175 PKTDQFHSLTPEEFNLLPTSPDWA-AGFRETWEPGEKAAHEHLALFVEDTLRGYSEERDY 233
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ S LSPYL FG ++ +++ + A +N + FL +G RE++
Sbjct: 234 PAAEACSRLSPYLRFGHVTPAQLWHAVMQAD---ASAQNKDK------FLAELGWREFAW 284
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ F R L PW D KAW+ GRTGYPLVDAGMRELW TGW+HNRI
Sbjct: 285 SILFEQANVATRSLRPEFDALPWRTDPKGLKAWQSGRTGYPLVDAGMRELWHTGWMHNRI 344
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R++V+SF VK LL+ WR G ++F DTL+D D + + WQ+ +G+ D R+ +P +
Sbjct: 345 RMVVASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPFFRIMNPIL 404
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q KFD EGEY+R+W+PEL R+P IH PW A LKA GV LG YP PII+ L R
Sbjct: 405 QSEKFDAEGEYIRRWVPELQRVPASMIHAPWAADQEALKACGVVLGRTYPHPIIEHKLAR 464
Query: 475 ER 476
ER
Sbjct: 465 ER 466
>gi|339021825|ref|ZP_08645812.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
gi|338751178|dbj|GAA09116.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
Length = 490
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 237/471 (50%), Gaps = 15/471 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+V FR D R+ D+PAL+ A G V VY P+ G WWL Q+ + L +
Sbjct: 14 LVLFRDDFRLTDHPALSGACTTGQPVLCVYVHDPETTR----GGAIGWWLAQACTALADA 69
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G L + T + E A V +N YDP +D ++K +L + GISV
Sbjct: 70 LSEKGGTLHHL-SGHTPDVVAEFAQAAGVDTVFWNRRYDPTGKAQDTALKARLEQQGISV 128
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCS 184
QS LL+EPW I G + F A+W K + +P LP P ++ A D +
Sbjct: 129 QSCAARLLHEPWTIRTGAGTPYRVFTAWW-KAARAMGKPGRCLPAPRQITFAPLPADAQA 187
Query: 185 IEDLGLEDESEKSSNALLGRG-WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ L + A W ++A LT FVE +L Y + + ++TS L
Sbjct: 188 LTLRTLPPAPPLPAGANAAEADWPCTEADAQDTLTTFVEDNLAHYIQEHDRPDKDTTSRL 247
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYL G LS R+V+ + A EN E FL +G R+++ F P
Sbjct: 248 SPYLRAGLLSARQVWHAVSTAATTPALAENAEK------FLSELGWRDFAWMQLFYEPDL 301
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R L + PW AW+QG+TGYPLVDAGMR+L+ATGW+HNR+R++V+SF
Sbjct: 302 AWRNLRPEFDHMPWQKSPALLAAWQQGQTGYPLVDAGMRQLYATGWMHNRVRMVVASFLT 361
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL WR G ++F L+DAD + + WQ+ +G+ D R+ +P Q KFDP G
Sbjct: 362 KHLLTDWREGEQWFQARLVDADPAQNAMNWQWCAGTGIDASPWFRIFNPVGQSEKFDPTG 421
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Y+R W+PEL +MP + IH PW A ++ + G G +YP PI+DL L R
Sbjct: 422 AYIRTWVPELRQMPDKLIHTPWKADASLCRQIGFTPGRSYPNPIVDLKLAR 472
>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
Length = 483
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 243/476 (51%), Gaps = 10/476 (2%)
Query: 6 TIVWFRRDLRIEDN-PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TI+WFR+DLR++DN LAA G V P+Y P+E G G WWL SL L Q
Sbjct: 9 TILWFRKDLRLDDNRALLAALQAAGPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVSLDQ 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+S G+ LVL + L I + V +N YDP + D +K L G+
Sbjct: 69 SLQSYGSRLVLRRGPPG-QVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAALRSDGLE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
S+ G LL+EP ++ G F + +W + P + P L A D
Sbjct: 128 ATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEKQGDPPPPVERPKTLHNPAHWPDSDR 187
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ED L + W+PG A L++F++ L Y R TS LS
Sbjct: 188 LEDWQLLPTKPDWAKEF-SEIWTPGEPGAQDKLSQFIDHGLKGYRTQRDFPALPHTSGLS 246
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L GE+S ++ W I + + + F + + RE+S +L F+F
Sbjct: 247 PHLALGEISPARI----WHATIGLGDDVS---TDDYVHFRKELVWREFSYHLLFHFADLA 299
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ FPW + AW++G+TGYP+VDAGMR+LW G +HNR+R+IV+SF +K
Sbjct: 300 SQNWNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVASFLIK 359
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
L++ WR G +F TL+DAD + WQ+++GS D R+ +P Q KFDP+G+
Sbjct: 360 DLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQSEKFDPDGD 419
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+RQ++PELA++P IH P++AP +L+ AG+ LG YP P++D R +A
Sbjct: 420 YIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHKRARAVALEA 475
>gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054]
gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424]
gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
AU 1054]
gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
HI2424]
Length = 519
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 163/471 (34%), Positives = 234/471 (49%), Gaps = 14/471 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G + V+ G +RWWL SL+ L
Sbjct: 37 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 96
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L L+L + ++ + + A V +N Y D ++K L G++
Sbjct: 97 ALARHDGRLLLLRGDAQRE-IERVVGDTGAAAVYWNRRYAQPQRDADAALKASLKARGVT 155
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV-----QAAGT 179
V+S NG LL EPWE+ G + F AYW + + A + P R+ QA
Sbjct: 156 VESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPERIAFHPWPQAVRD 215
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGW-SPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ + L W +P + A L F+ L Y R +
Sbjct: 216 RALALDALALRPHAPDWAGG--LRDAWPAPDEAGALARLDTFLTTSLAGYADARDRPDRP 273
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS LSP+L FG +S R+V+ + A FL +G RE+S L +
Sbjct: 274 ATSRLSPFLRFGNVSPRQVWHAVQGA----ANAGGAVYAAHADKFLSELGWREFSYTLLY 329
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+FP + PW D +AW++GRTGYPLVDAG+RELW TGW+HNR+R++V
Sbjct: 330 HFPALATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVV 389
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K LL+ WR G +F DTL+DAD + WQ+++G D R+ +P QG K
Sbjct: 390 ASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQK 449
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
DP+G YVR+W+PELA + IH PW+A P L+AAGV LG++YP P+++
Sbjct: 450 CDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVE 500
>gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 469
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 254/485 (52%), Gaps = 28/485 (5%)
Query: 1 MGGNRTI-VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M R I +WFR D R+ DN A+ AA + S PV + +E + WW+ +SL
Sbjct: 1 MSDTRPILIWFRHDFRLRDNAAITAAIQ--SRNPVICFYIQESADAKTENAADWWVAESL 58
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L + LK G +L LF+ ++ + E + A K+ +N YD D +K+ +
Sbjct: 59 LALNRQLKEKGGQLHLFEGDAE-KIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIR 117
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAG 178
+G+ VQS+ +LL EPW + +++G F F AYW + +Q M ++LP P V +
Sbjct: 118 AMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYW-RAVQRHMNIQAVLPCPENWVFSTR 176
Query: 179 TIDGC-SIEDLG-LEDESEKSSNAL-LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
I C +D+ L E++ SS + L + G + A + L F+E L Y K R
Sbjct: 177 EIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAHYAKERDFP 236
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TSLLS +L G++S +++ W + E + FL +G RE++
Sbjct: 237 AKDGTSLLSAFLRSGQISSKQI----------WHEVTKNGSGEGTSKFLAELGWREFAWS 286
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ + P ++R L PW N + W++G+TGYP +DAGMR LW TG++ NR+R
Sbjct: 287 VLWEHPDLNQRNLRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ +SF VK LL+ WR G K+F TL+D D C+ WQ+++GS + R+ +P +Q
Sbjct: 347 MVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP+G+Y+R+W+ ELA + T +IH PW A NYP PII + GR+
Sbjct: 407 SQKFDPDGQYIREWVKELADVSTAFIHTPWKADKQ---------PANYPLPIIAHEEGRD 457
Query: 476 RLTQA 480
R +A
Sbjct: 458 RALRA 462
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 162/484 (33%), Positives = 249/484 (51%), Gaps = 24/484 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D+PAL AA G +P G +RWWL+ +L+ L +
Sbjct: 9 AIVWFRDDLRMADHPALHEAAASGWPLICLYILDDVTPALHPLGAAARWWLRGALADLRR 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ G L+ + S L + A V ++H +D+ I+ L E
Sbjct: 69 NLEKQGGTLLTL-SGSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLEEQECE 127
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V + G +L +P + ++G + ++W K LQ P + P RL A I
Sbjct: 128 VHAQWGTVLVDPDTVQTKQGGFYKVCGSFW-KALQTHAVPEPLEAPSRLSFHA--IPASV 184
Query: 185 IEDLGLEDES----EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ D L ++S A + W PG + + L +F++ + Y + R ++ T
Sbjct: 185 LSDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRVAEEGT 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYL G +S R+V+ L +++ + FL +G RE++RY ++
Sbjct: 245 SRLSPYLASGAVSPRQVWAAL---------QKHGAHTDGPRIFLSELGWREFARYTLYHL 295
Query: 301 P---FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
P F + P S + W + KAW++G+TG P+VDAGMR+LW TGW+HNR R+I
Sbjct: 296 PKLPFENLSPKFSGMH---WRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMI 352
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V SF K LL+ W+ G +F DTL+DAD + + WQ+++G+ + R+ +P Q
Sbjct: 353 VGSFLTKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAE 412
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFDP G+Y+RQW+PEL R+ + + PW A L+ AGV LG +YP+PI+DL GR+R
Sbjct: 413 KFDPNGDYIRQWVPELRRLSGKALFEPWAAKDEELEKAGVRLGKSYPRPIVDLKEGRDRA 472
Query: 478 TQAI 481
QA
Sbjct: 473 LQAF 476
>gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
Length = 484
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 246/477 (51%), Gaps = 11/477 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++WFR DLR+ DNPALAAAA G V +Y G G + WWL SL L
Sbjct: 7 AVIWFRDDLRLADNPALAAAAASGRRVLALYVLDEDSPGVRALGGAALWWLAGSLRALKA 66
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L G LVL + E+ + + A A V FN D ++ L G++
Sbjct: 67 ELGQHGVPLVLRRGEAG-RIVPDVARAAGADLVAFNWRAGKAEQAVDEAVARHLSAAGVT 125
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+ G LL+ P + G TF ++ ++ + + LP RL A +
Sbjct: 126 VERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKGR-DIGRTLPVPRL-NGAAPLPCDD 183
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+E+ LE + L W PG + A L F+ L Y + R + S LS
Sbjct: 184 LEEWALEPTQPDWAGGLRTT-WHPGEAAARARLEAFLADGLAGYGEGRDRPDQTHVSRLS 242
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYL FGE+S R+V + L A + + V F + RE+S +L F P
Sbjct: 243 PYLRFGEISPRQV-----LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLFAVPDLA 297
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
R L ++ FPW G+ K W++GRTGYP+VDAGMR+LW TGW+HNR+R+IV+SF K
Sbjct: 298 RRNLQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMIVASFLCK 357
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LLLPW+ G +FWDTL+DADL + WQ+++GS D R+ +P +QG KFDPEG
Sbjct: 358 HLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKFDPEGT 417
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
YVR ++PEL +P IH PW AP + + GV LG +YP+P+++ R+R +A
Sbjct: 418 YVRTYVPELKDVPARLIHQPWSAPLELTR-YGVRLGRDYPEPMVEHGAARDRALRAF 473
>gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 469
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 252/485 (51%), Gaps = 28/485 (5%)
Query: 1 MGGNRTI-VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M R I +WFR D R+ DN A+ AA + S PV + +E + WW+ +SL
Sbjct: 1 MSDTRPILIWFRHDFRLRDNAAITAAIQ--SRNPVICFYIQESADAKTESAADWWVAESL 58
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L + LK G +L LF+ ++ + E + A K+ +N YD D +K+ +
Sbjct: 59 LALNRQLKEKGGQLHLFEGDAE-KIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIR 117
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAG 178
+G+ VQS+ +LL EPW + +++G F F AYW + +Q M ++LP P V +
Sbjct: 118 AMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYW-RAVQRHMNIQAVLPCPENWVFSTR 176
Query: 179 TIDGC-SIEDLG-LEDESEKSSNAL-LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
I C +D+ L E++ SS + L + G + A K L F+E L Y K R
Sbjct: 177 EIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFP 236
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TSLLS +L G++S +++ W + E + FL +G RE++
Sbjct: 237 AKDGTSLLSAFLRSGQISSKQI----------WHEVTKNGSGEGTSKFLEELGWREFAWS 286
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ + P ++ L PW N + W++G+TGYP +DAGMR LW TG++ NR+R
Sbjct: 287 VLWEHPDLNQHNLRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ +SF VK LL+ WR G K+F TL+D D C+ WQ+++GS + R+ +P +Q
Sbjct: 347 MVTASFLVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP+G+Y+R+W+ ELA + T +IH PW A NYP PII + GR
Sbjct: 407 SQKFDPDGQYIREWVKELADVSTAFIHTPWKADKQ---------PANYPLPIIAHEEGRN 457
Query: 476 RLTQA 480
R +A
Sbjct: 458 RALRA 462
>gi|349688251|ref|ZP_08899393.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter oboediens
174Bp2]
Length = 461
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 165/468 (35%), Positives = 230/468 (49%), Gaps = 44/468 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TI+WFR DLR+ DNPAL AA G V +Y P F G +WWL +L+ L
Sbjct: 19 TIMWFRDDLRLMDNPALCDAAARGPVICLYIHDPA----FPLGGAEKWWLHGALTALDHD 74
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
+ G L + +S L + A VV+N Y P + D IK L GI
Sbjct: 75 SGACGGRLWIMAGDSR-ENLSWLVGQTGAEGVVWNRRYGPHARQVDADIKAALKARGIDA 133
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL----VQAAGTID 181
S+ G++L+EPW++ ++G F F +W M + P R V +A
Sbjct: 134 CSHPGNMLHEPWQVRTKQGTPFRVFTPWWRAVQAMGAPLPPLPAPVRTTFAPVPSAVADR 193
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ DL L + L G+ W PG + A L FV + + Y R+ +TS
Sbjct: 194 LVAVPDLALLPVRPDWAGGLRGQ-WQPGEAAAHARLDSFVAEQVHGYATRRELPAQPATS 252
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSPYL FG +S R+++ A + +G + FL +G R++++ F+FP
Sbjct: 253 GLSPYLRFGHVSARQIWH---------AVDATGQGDQDTACFLSEVGWRDFAQSTLFDFP 303
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
L S PW D +AW+ G+TGYP++DAGMRELW TGW+HNR+R+IV+SF
Sbjct: 304 DLGTTNLRSEFNGMPWRHDPAALRAWQAGKTGYPIIDAGMRELWHTGWMHNRVRMIVASF 363
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K LL WR G +F DTL+DAD R+ +P QG KFDP
Sbjct: 364 LTKHLLTDWRAGAAWFADTLVDADAA-----------------PYFRIFNPVSQGEKFDP 406
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
GEYVR+W+PE+AR+P ++IH PW AG YP PI+D
Sbjct: 407 AGEYVRKWVPEIARLPDKYIHAPWK--------AGSVAPAGYPPPIVD 446
>gi|359407531|ref|ZP_09200008.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677570|gb|EHI49914.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 487
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 167/489 (34%), Positives = 251/489 (51%), Gaps = 34/489 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTW-------------CPKEEGQFYPGRVSR 52
TI WFR DLR+ DNPAL +AA+ G V +Y P + GR +R
Sbjct: 4 TIHWFRSDLRLSDNPALTSAAQSGEVICLYILDVIDDRLPSVHIDAPIHQTN-ASGRATR 62
Query: 53 WWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
WL ++L L L+ +L K L L + I+ A KV Y P D
Sbjct: 63 VWLHKALDSLNADLEGH----LLLKRGPALTILRQLIAQTGADKVTMTRRYAPHHSASDL 118
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR 172
I++ L E G++V +G+LL+EP ++ + G + F ++ + P LP
Sbjct: 119 QIEQALSEDGVTVSVISGNLLWEPEQVTKQDGTPYKVFTPFYRRGCLAAAPPRRPLPRPE 178
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV----EQHLLRY 228
+ G ++++L L + + GW+ + A L+ FV + L Y
Sbjct: 179 ISFVELPDGGQTLDELELIPPLPWAEQ--VTSGWTISEAGAQDALSAFVTPDPQTGLGCY 236
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE-SVTFFLRAM 287
R +TS LSPYL FG++S + + +A E +F + ++ F +
Sbjct: 237 ADGRNLPAKPATSRLSPYLKFGQISPHQAW---------YAAEGSFHDSDVNLDMFRSEL 287
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
G RE+S +L + P PL + F W + + +AW+ G+TGYP+VDAGMREL+ T
Sbjct: 288 GWREFSYHLLKSNPELKTTPLQAKFANFDWLDNSEHLRAWQIGQTGYPIVDAGMRELYQT 347
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
G++HNR+R+IV SF VK LLL W G +FWD L DAD + WQ+I+G D
Sbjct: 348 GYMHNRVRMIVGSFLVKNLLLDWHHGEAWFWDCLFDADAASNTASWQWIAGCGADAAPYF 407
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P QG KFDP+G+Y R+++PELA MP++++ +P+DAP VL AGV LG YP+P+
Sbjct: 408 RVFNPITQGQKFDPDGQYTRRFVPELAEMPSKYLFNPFDAPREVLMRAGVRLGATYPRPL 467
Query: 468 IDLDLGRER 476
+D+ R R
Sbjct: 468 VDVKSSRLR 476
>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
Length = 486
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 249/478 (52%), Gaps = 10/478 (2%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M I+ F ++LR D P L + + P++ PK + G S+WWL QS+
Sbjct: 1 MQQQPIILVFYQNLRFHDQPLLLEVLQHTQPIIPIFINDPKVIERL--GEASQWWLYQSI 58
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
Q KS ++ +T ++ L + + A K+ Y + D I E+L
Sbjct: 59 RAFKQQWKSAYNIELILRTGDSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELN 118
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
GI+++ +N LL+EP I +++G++F F +W CL +E P
Sbjct: 119 RDGITIKFFNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEADLPAPDHIFNGYNQP 178
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
I+ + D S+ + L W A L F++ L Y NR + S
Sbjct: 179 INSDDLSDWKW-GHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASPS 237
Query: 240 -TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+S LSPYL +G++S +K+F +++ E + ++ FL+ +G RE+S YL +
Sbjct: 238 FSSQLSPYLRWGQISAKKIF-----NEVIHTMERDPTIQQDGNTFLKEIGWREFSYYLLY 292
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+ P E PL + FP+ +L + W++G TG+P++DAGMR+LW GW+ NR+R+IV
Sbjct: 293 HHPSMQEVPLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIV 352
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K LL+ W++G +F DTL+DAD + WQ+++G D R+ +P QG K
Sbjct: 353 ASFLIKDLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKK 412
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
FD EG+Y+R+++PEL +PT++IH PW+ P + + V +G +YP PI+D + + +
Sbjct: 413 FDSEGKYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIVDHTIQKNK 470
>gi|384412560|ref|YP_005621925.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|335932934|gb|AEH63474.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 467
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 253/485 (52%), Gaps = 28/485 (5%)
Query: 1 MGGNRTI-VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M R I +WFR D R+ DN A+ AA + S PV + +E + WW+ +SL
Sbjct: 1 MSDTRPILIWFRHDFRLRDNAAVTAAIQ--SRNPVICFYIQESADAKTESAADWWVAESL 58
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L + LK G +L LF+ ++ + E + A K+ +N YD D +K+ +
Sbjct: 59 LALNRQLKEKGGQLHLFEGDAE-KIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIR 117
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAG 178
+G+ VQS+ +LL EPW + +++G F F AYW + +Q M ++LP P V +
Sbjct: 118 AMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYW-RAVQRYMNIQAVLPCPENWVFSTR 176
Query: 179 TIDGC-SIEDLG-LEDESEKSSNAL-LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
I C +D+ L E++ SS + L + G + A K L F+E L Y K R
Sbjct: 177 EIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFP 236
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TSLLS +L G++S +++ W + E + FL +G RE++
Sbjct: 237 AKDGTSLLSAFLRSGQISSKQI----------WHEVTKNGSGEGTSKFLAELGWREFAWS 286
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ + P ++ L PW N + W++G+TGYP +DAGMR LW TG++ NR+R
Sbjct: 287 VLWEHPDLNQHNLRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ +SF VK LL+ WR G K+F TL+D D C+ WQ+++GS + R+ +P +Q
Sbjct: 347 MVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP+G+Y+R+W+ ELA + T +IH PW A NYP PII + GR+
Sbjct: 407 SQKFDPDGQYIREWVKELADVSTAFIHTPWKADKQ---------PANYPLPIIAHEEGRD 457
Query: 476 RLTQA 480
R +A
Sbjct: 458 RALRA 462
>gi|357032216|ref|ZP_09094156.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
gi|356414443|gb|EHH68090.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
Length = 481
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 244/482 (50%), Gaps = 30/482 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IV FR DLR+ D+PAL AA G+ V VY + PG SRWWL +L+ L
Sbjct: 11 VIVCFRDDLRMADHPALHEAAASGAPVLCVYVLDDETSDLPPPGAASRWWLHGTLADLRG 70
Query: 65 SLKSLGAELVLFKTESTLAALLECI-----SAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L+ G L+ TL LE I A + ++H +D + L
Sbjct: 71 ALEKRGGTLL------TLGGPLEKILPRLAEETNARCIYWHHRLHEKERQQDERLIRTLN 124
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-----ASILPPWRLV 174
G+ V++ G +L +P I + G + + ++W K LQ Q P S P +R+
Sbjct: 125 HKGVEVRAQWGSVLLDPERIRTKEGGFYRVYTSFW-KALQGQAVPEPLDLPSDFPFFRVA 183
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ D +++ L + L W PG A + LT+F+ + Y + R
Sbjct: 184 PSLMKTD--RLDEAALLPRHPDWAGGLRST-WEPGEREAHEHLTDFLHHEVDHYGRGRDL 240
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TS LSPYL G +S R+V+ + E G E F +G RE++R
Sbjct: 241 MAEEGTSRLSPYLASGAISPRQVWATV--------GEHGLNG-EDARIFRSEIGWREFAR 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
Y ++FP ER L W + +AW++G+TG P+VDA MR+LW TGW+HNR
Sbjct: 292 YTLYHFPQLCERNLNRKFDALSWRRAPEDLRAWQKGQTGIPVVDAAMRQLWQTGWMHNRA 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV SF K LL+ WR G +FWDTL+DAD + + WQ+++G+ D R+ +P
Sbjct: 352 RMIVGSFLTKHLLVDWREGEAWFWDTLVDADRANNTMNWQWVAGTGIDAAPFFRVFNPSR 411
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q KFDP+G+Y+R+W+PELA++ + + PW A L AAGV LG YP PI+DL GR
Sbjct: 412 QAEKFDPDGDYIRRWVPELAKLSGKALVEPWKAQAEDLHAAGVTLGKTYPHPIVDLAEGR 471
Query: 475 ER 476
R
Sbjct: 472 SR 473
>gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|444309630|ref|ZP_21145264.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|443487021|gb|ELT49789.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
Length = 461
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 236/464 (50%), Gaps = 12/464 (2%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+ +VW R DLR+ DNPAL AA + G PG RWWL+QSL L +
Sbjct: 4 KALVWLRNDLRLADNPALHAAFKLGGAITALFVHESNPQLRDPGAAVRWWLEQSLDLLAR 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL EL++ E+ L + + I V +N Y P D IK L + G+
Sbjct: 64 SLNERNIELIVADGEA-LNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKDKGLR 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
V+S+ G+LL EPWEI G ++ F Y K L+ + P R V+
Sbjct: 123 VESFAGNLLVEPWEIKSGNGGSYQVFTPY-AKSLRQHGVSRPLPLPDRSVETTTVKHTPK 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ S K S W G + A L F + + Y +R + + TS LS
Sbjct: 182 QKNYKEAVWSRKMSGL-----WMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSKLS 236
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
+L FGE+S R+V+ ++ G + FL + R++ + + P
Sbjct: 237 AHLRFGEISPRQVWHA--TVSLMDQDHSTVPGGQK---FLSELIWRDFHYHQLYYRPDIA 291
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
E + L W ++ +WR+G+TG P++DAGMR+LWATGW+HNR+R++V+S K
Sbjct: 292 EIDMRDTLANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVASALCK 351
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
+ + WR G K+FWDTL+DAD+ + WQ+++G D R+ +P +QG KFD +G
Sbjct: 352 NMQIDWREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKFDTKGV 411
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
YVR+W+PE+A +P WIH P+ APP VL+ AGV LG YP PI
Sbjct: 412 YVRKWVPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPIF 455
>gi|2370251|emb|CAA04247.1| cryptochrome [Solanum lycopersicum]
Length = 187
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/184 (67%), Positives = 150/184 (81%), Gaps = 2/184 (1%)
Query: 139 IYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLG-LEDESEKS 197
+YD+ G FTTFDAYW+K L +Q EP S LPPWRL QAAG++ CS+E +G LE+ESEKS
Sbjct: 1 VYDDDGKVFTTFDAYWEKSLSIQNEPVSQLPPWRLTQAAGSVKMCSVEGVGDLENESEKS 60
Query: 198 SNALLGRGWSPGWSN-ADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRK 256
SNALLG+GW+PGW ADK LTEFVE +LL Y K+R ++GGNSTSLLSPYLHFGE+SVRK
Sbjct: 61 SNALLGKGWAPGWRPIADKALTEFVESNLLAYSKDRLRVGGNSTSLLSPYLHFGEVSVRK 120
Query: 257 VFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFP 316
VF + +KQILW KE N GK+S T +LRA+GLREYSRY+ NFPFTHER LL+NL++FP
Sbjct: 121 VFNSVRLKQILWTKEGNSVGKDSATIYLRAIGLREYSRYISLNFPFTHERSLLNNLRFFP 180
Query: 317 WHAD 320
+AD
Sbjct: 181 RNAD 184
>gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 464
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/480 (32%), Positives = 256/480 (53%), Gaps = 29/480 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ +E G S+ WL SLS
Sbjct: 1 MPKKIAIHWFRQDLRLADNPALHQASQADETITIFILDENQE----IGGASKLWLHHSLS 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
SL + F + + L + + + T +N YD S+ RD IK+ L E
Sbjct: 57 ----SLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFLQE 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP----WRLVQA 176
I+V S+NG LL EPW+ + G + + ++ + ++++ ++I+ P + ++
Sbjct: 113 QDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKLET 172
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
A +D + + L ++ + W G + ++L EF++ + Y R +
Sbjct: 173 ADELDSLKLLEPKLSWQN-------IIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMS 225
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+STS LSPYLHFGE+S ++F + + EE+F ++ + R++S Y
Sbjct: 226 TDSTSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQ 276
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+ +P H + + F W D K W+ G+TG P+VDAGMRELW TG++HNR+R+
Sbjct: 277 IYYYPELHNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRM 336
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q
Sbjct: 337 IVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQA 396
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KF+ EY+R+++PEL +P + I PW+A VL+ AGV+LG NYP P+IDL R++
Sbjct: 397 EKFEAY-EYIRKYVPELKFLPNKLIAKPWEASELVLQEAGVKLGDNYPTPVIDLKKSRDK 455
>gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 457
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 241/469 (51%), Gaps = 37/469 (7%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + +VW RRDLR+ D+PAL AA+ G V V +C ++ G SRWWL SL+
Sbjct: 1 MTNDPILVWLRRDLRLTDHPALTHAAQQGPV--VLAFCHDDQDGRALGGASRWWLHHSLA 58
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
LG ++ L + E+ + L E A A V +N DP + +++ L
Sbjct: 59 ALGDTVT-----LARGRCEAEIPRLAE---ACGARAVYWNASADPALSATEARVRQAL-- 108
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I +++ GD L+ + G F F +W L + P + P LV A
Sbjct: 109 -KIPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLA--PC 165
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
G + L L + + + W PG + A L +F++ + Y ++R T
Sbjct: 166 PGLPLAALELMPKLDWWRG--MAELWQPGEAGAAARLADFLDGPVETYQRDRDLPAKPGT 223
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSP+L FGE+S R++ W + + FL+ +G RE+SR+L
Sbjct: 224 SLLSPHLAFGEISPRQI----------WHAARALPPGDGIHTFLKELGWREFSRHLLARQ 273
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P PL + FPW D + W+ GRTGYP++DAG+R+LW TGW+HNR+R+IV+S
Sbjct: 274 PDLATIPLRPEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVAS 333
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+PW+ G +FWDTL+DAD + WQ+++GS D R+ +P QG KFD
Sbjct: 334 FLIKDLLIPWQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKFD 393
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P+G YVR W+PELA +P ++H PW + +A G YP P++D
Sbjct: 394 PDGTYVRTWVPELAHLPKAFVHQPW----KMGRAPG------YPPPMVD 432
>gi|378550464|ref|ZP_09825680.1| hypothetical protein CCH26_10260 [Citricoccus sp. CH26A]
Length = 479
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 169/494 (34%), Positives = 239/494 (48%), Gaps = 47/494 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP---GRVSRWWLKQSLSYL 62
TIVWFR DLR+ D+PAL AA G+V ++ ++ P G +RWW +SL L
Sbjct: 13 TIVWFRDDLRVADHPALTAAREAGAVVGLWIREARDAEGRGPRPLGGATRWWAHRSLEVL 72
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L+ LG LV F L S ++A+ V ++ Y P S D +K+ L G
Sbjct: 73 AVELEELGIPLV-FAAGPAAEVLPAVASGLQASAVTWSRRYAPASRALDAHLKDGLRAAG 131
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM-----EPASILPPWRL---- 173
+ V S+ G LL EPWE+ G + F +W + + P PP L
Sbjct: 132 LEVHSHPGSLLVEPWEVSTGSGGHYKVFTPFWKAAADLPVGAPLPAPEPQDPPAGLSGRL 191
Query: 174 --VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
+ GT+ + L L DE + + R W PG A + L E+ + Y
Sbjct: 192 DRLHRDGTV--VPLGQLDLLDEDPRWWEETVARYWEPGCVTAGEALAGL-EETVTGYSTT 248
Query: 232 RQKLGGN-STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
R G + TS LSP L FGELS R++ + L E E ++R + R
Sbjct: 249 RDVPGDDHGTSRLSPRLRFGELSPRQLVHAVTAHPELGVPE-----NEDRRAWVRQLYWR 303
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
E+S +L ++ P PL + FPW D +AW++GRTG PLVDAGMR+LW +GW+
Sbjct: 304 EFSWHLTYHCPPLESGPLRPEFRAFPWEPDDDALRAWQRGRTGVPLVDAGMRQLWQSGWV 363
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR+R++V SF K LL PW G ++FWDTL+DAD + + WQ+++G D R+
Sbjct: 364 HNRVRLVVGSFLAKNLLHPWWDGEQWFWDTLVDADEANNPVSWQWVAGCGADAAPYFRVF 423
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
+PE Q +FDP+G YVR+W+PE VE YP+PI+DL
Sbjct: 424 NPETQRERFDPDGVYVRRWVPE-----------------------AVEPLSGYPEPIVDL 460
Query: 471 DLGRERLTQAIFKM 484
R A +M
Sbjct: 461 KESRRHALDAYEEM 474
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 242/481 (50%), Gaps = 18/481 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D+ AL AA G + +Y + G SRWWL +L+ L +
Sbjct: 13 VIVWFREDLRLSDHLALQAALATGQPLICLYVLDDETPALHSLGGASRWWLHGALADLRR 72
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L L++ K S + + A V ++H +D I L G +
Sbjct: 73 TLGRHQGTLLMLKG-SAEKLVPQLARETGAQSVYWHHRLHQKEREQDERIAIALKTQGAA 131
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ G +L +P ++ + G + F +W K Q Q P + P L + +
Sbjct: 132 AEGSWGTVLLDPAQVQTKEGRFYQVFTTFW-KAFQAQDVPEPLGSPANL--SFYPLSDSL 188
Query: 185 IEDLGLEDESEKSSN----ALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L++ + ++ A L W PG A + L +FV RY K R +L T
Sbjct: 189 LAQYWLDESTLLPTHPDWAAGLRASWEPGEKEAHEHLEDFVRHDCSRYGKGRDELSREGT 248
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYL G +S R+++ L ++ E FL +G RE+++Y F+
Sbjct: 249 SRLSPYLASGAISPRQIWAAL---------QKKGAHDEGARIFLSEIGWREFAKYTLFHQ 299
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
+ L + PW + AW+QGRTG P+VDAGMR+LW TGW+HNR R+IV S
Sbjct: 300 ARLPDTSLGQKFEKMPWRKSEKDLLAWQQGRTGVPIVDAGMRQLWKTGWMHNRARMIVGS 359
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR G +F DTL+DAD + + WQ+++G+ D R+ +P QG KFD
Sbjct: 360 FLTKHLLIDWREGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGVKFD 419
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G+Y+RQW+PEL ++ + + PW+A L+ AG+ LG YP+P++DL GR+R A
Sbjct: 420 PDGDYIRQWVPELKKLSGKDLFEPWNAKEGDLERAGITLGKTYPRPVVDLKEGRDRAMAA 479
Query: 481 I 481
Sbjct: 480 F 480
>gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis]
Length = 157
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/157 (74%), Positives = 140/157 (89%)
Query: 211 SNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAK 270
SNADK+LTEF+E+ L+ Y KN +K+ GNSTSLLSPYLHFGE+SVR+VFQC MKQI+WA+
Sbjct: 1 SNADKLLTEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWAR 60
Query: 271 EENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQG 330
++N +G+ES FLR +GLR+YSRY+CFNFPFTHE+ LLS+L++FPW AD+ FKAWRQG
Sbjct: 61 DKNGQGEESAVLFLRGIGLRDYSRYICFNFPFTHEQSLLSHLRFFPWDADVEKFKAWRQG 120
Query: 331 RTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLL 367
RTGYPLVDAGMRELWATGW+HNRIRVIVSSFAVK LL
Sbjct: 121 RTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLL 157
>gi|424869859|ref|ZP_18293539.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'C75']
gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum]
gi|387220321|gb|EIJ75034.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'C75']
Length = 536
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 165/481 (34%), Positives = 239/481 (49%), Gaps = 26/481 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFR +LR+ DNP L AA G + PV+ P P WW +SL L S
Sbjct: 64 SIVWFRNNLRLSDNPPLREAAERGPLLPVFIGEPSRGAS--PEGARHWWRARSLRCLDHS 121
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LGA L+ + + + L + + +K K++ DP ++ L +
Sbjct: 122 LSRLGAPLLFLRGDPAIL-LPDLATRLKIDKILAMEAIDPDGRRTQSRLQSALSGKPVEF 180
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ D L P + ER + F +W + P + A +DG
Sbjct: 181 HLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLP-------LPAPDRLDGIPF 233
Query: 186 ------EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
ED G E E + A + W PG A + L F+E+ L Y R L ++
Sbjct: 234 PRSETPEDWGWEPEKPDWA-AEMRSFWDPGEEGARRRLNAFLEKRLKNYAVKRDFLDEDT 292
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
+SLLSP+L GE+S+R V+ W+ E+ +E FL +G RE+S +L ++
Sbjct: 293 SSLLSPHLANGEISIRSVW---------WSIRESTAPEEDRAKFLSELGWREFSAHLMWH 343
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P +PL W D + AW++GRTG PLVDAGMR+L G++ NR+R++
Sbjct: 344 HPDLATQPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAG 403
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G ++F D L+D D + WQ+ISG D R+ +P +QG KF
Sbjct: 404 SFLVKNLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKF 463
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DPEG YV+ +LPELAR+P ++H PW AP ++L AG+ Y PI+DL L R+R Q
Sbjct: 464 DPEGRYVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVDLGLSRKRALQ 523
Query: 480 A 480
A
Sbjct: 524 A 524
>gi|393770609|ref|ZP_10359088.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. Rr 2-17]
gi|392723956|gb|EIZ81342.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. Rr 2-17]
Length = 465
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 250/480 (52%), Gaps = 38/480 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVW RRDLR+ + PA A AA G V PVY + G SRWWL SL L ++
Sbjct: 12 TIVWLRRDLRLCNQPAFAEAAGKGPVIPVYVLDDEAARHHAMGGASRWWLHHSLDSLDKA 71
Query: 66 LKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L++ G+ L+L K +E+ LA+L E A + V H Y+P R+ EK V +
Sbjct: 72 LRAKGSRLILRKGRSETVLASLAEETGAREIHAV---HHYEP--WWRN---AEKAVAKAV 123
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+++ ++G+ L P I G F + +W + P PP +L A
Sbjct: 124 TLRLHHGNYLAPPGSITTGAGTPFKIYTPFWRAMREHMPPPQPHDPPAKLDAPAHWPKSD 183
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+++D L S+ + + W PG + A K L FVE+ RY R + +S+L
Sbjct: 184 TLDDWKLL-PSKPDWAGGMKKTWQPGEAGAAKHLDAFVEE-ASRYEAQRNLPSVDGSSML 241
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S +V+ + A E SV FL + R+Y++ + FP
Sbjct: 242 SPHLHFGEISPAQVWHAV-------ADEGG-----SVNTFLGEVAWRDYAQNVILQFPDY 289
Query: 304 HERPLLSNLKYFPW---HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
R FPW A + +AW+QGRTGYP+VDAGMR+LWATGW+HNR+R+I +S
Sbjct: 290 ATRSARDPFGAFPWRTGQAADADLQAWQQGRTGYPIVDAGMRQLWATGWMHNRVRMIAAS 349
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWDTL+DAD + + WQ+++GS D + R+ +P Q KFD
Sbjct: 350 FLIKHLLIDWREGERWFWDTLVDADYGSNAVNWQWVTGSGIDANMFPRIMAPLSQSEKFD 409
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G Y+R+W+PELA++ IH P D + NYP +ID RER A
Sbjct: 410 AAG-YIREWVPELAKLSDAEIHDPSD----------MFRPKNYPPKLIDHREARERALAA 458
>gi|209543430|ref|YP_002275659.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
Length = 463
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 231/468 (49%), Gaps = 32/468 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFR D RI DN AL A + G P ++ PG +RWWL ++ L ++
Sbjct: 9 TIVWFREDFRIADNMALLEAEKRGQ--PTLCIVILDDAHL-PGAAARWWLHGAIRSLDET 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ +G L +F+ + A L E + A V +N YDP D +IK L G++V
Sbjct: 66 LRGMGGALHVFRGAAR-AVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRARGLTV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EPW + G + F A+W + P RLV A S+
Sbjct: 125 RSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPMPDSL 184
Query: 186 ----EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
E GL + L WSPG A L++F+ Y R G +TS
Sbjct: 185 ITRHEQDGLLPRHPDWAGGLRDM-WSPGEEEAGDQLSDFLRHDGAGYATARDFPGDEATS 243
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+L FG +S +V+ K FL +G R+++ L F P
Sbjct: 244 RLSPFLRFGHVSPAQVWHAA-------------TRKACPDKFLMELGWRDFAWSLLFFNP 290
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
R L PW D G AW++G+TGYPLVDAGMRELW TGW+HNR+R++ +SF
Sbjct: 291 DLATRNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVAASF 350
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+ WR G ++F DTL+D D + + WQ+ +G+ D R+ +P +Q KFDP
Sbjct: 351 LVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRKFDP 410
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
G Y+R+W+PELA + + IH PW++ YP PI+D
Sbjct: 411 HGVYIRRWVPELAHLSDDAIHAPWESGAT----------HPYPAPIVD 448
>gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 464
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 155/480 (32%), Positives = 256/480 (53%), Gaps = 29/480 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M I WFR+DLR+ DNPAL A++ ++ +E G S+ WL SLS
Sbjct: 1 MPKKIAIHWFRQDLRLADNPALHQASQADETITIFILDENQE----IGGASKLWLHHSLS 56
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
SL + F + + L + + + T +N YD S+ RD IK+ L E
Sbjct: 57 ----SLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFLQE 112
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP----WRLVQA 176
I+V S+NG LL EPW+ + G + + ++ + ++++ ++I+ P + ++
Sbjct: 113 QDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKLET 172
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
A +D + + L ++ + W G + ++L EF++ + Y R +
Sbjct: 173 ADELDSLKLLEPKLSWQN-------IIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMS 225
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+STS LSPYLHFGE+S ++F + + EE+F ++ + R++S Y
Sbjct: 226 TDSTSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQ 276
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+ +P H + + F W D K W+ G+TG P+VDAGMRELW TG++HNR+R+
Sbjct: 277 IYYYPELHNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRM 336
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q
Sbjct: 337 IVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQA 396
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KF+ EY+R+++PEL +P + + PW+A VL+ +GV+LG NYP P+IDL R++
Sbjct: 397 EKFEAY-EYIRKYVPELKLLPNKLLAKPWEASNLVLQESGVKLGDNYPTPLIDLKKSRDK 455
>gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
Length = 494
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 165/469 (35%), Positives = 239/469 (50%), Gaps = 10/469 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G + V+ G +RWWL SL+ L
Sbjct: 12 AIVWFRDDLRVTDQPALTLAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 71
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G++
Sbjct: 72 ALARHGGRLLLLRGDAQRE-IERLVRDTGAAAVYWNRRYAQPQRDADAALKTSLKARGVA 130
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV----QAAGTI 180
V+S NG LL EPWE+ G + F AYW + + A + P ++V A
Sbjct: 131 VESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRAVAAPLPAPGQIVFHSWPKAVRD 190
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ L L + + L +P + A L F+ L Y R + +T
Sbjct: 191 RALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGYADARDRPDRPAT 250
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FG +S R+V W A FL +G RE+S L ++F
Sbjct: 251 SRLSPFLRFGNVSPRQV----WHAVQGAASAGGAAYAADADKFLSELGWREFSYTLLYHF 306
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + PW D +AW++GRTGYPLVDAG+RELW TGW+HNR+R++V+S
Sbjct: 307 PTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVAS 366
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G +F DTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 367 FLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKFD 426
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P+G YVR+W+PELA + IH PW+A P L+AAG+ LG++YP P+++
Sbjct: 427 PDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPLVE 475
>gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
phenanthrenivorans Sphe3]
Length = 478
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 175/486 (36%), Positives = 240/486 (49%), Gaps = 25/486 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+IVW R DLR++DNPALAAA G + VY EG G SRWWL SL+ L
Sbjct: 8 SIVWLRDDLRLDDNPALAAAVDLGLPLTVVYILDEDSEGVRPLGSASRWWLHHSLASLAS 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ G+ L+L + + L + +A A + +N Y D ++K E GI
Sbjct: 68 SLEASGSRLLLQRGPAE-PILKDLAAATNAGHLFWNRRYGLPERTVDAAVKAWAGENGIE 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-----QMQMEPASILPPWRLVQAAGT 179
SY +LL+EPW I G + F +W CL + + LPP +
Sbjct: 127 ALSYQANLLFEPWTIRTGAGGPYKVFTPFWRACLASGDVRDPLSAPPQLPPPPAGKTGSG 186
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
G ++E L S S L + W PG A + L +F+E Y R G
Sbjct: 187 PAGDALETWRLFPSSPDWSGGL-AKTWEPGEEGARQRLEDFLEGSAQDYGTGRNIPGVEG 245
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FGE+S +V++ + E V F +G RE+ +L +
Sbjct: 246 TSRLSPHLRFGEVSPFRVWREI-------RGRFPREVPADVGIFRSELGWREFCWHLLYT 298
Query: 300 FPFTHERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
P R F W + AW+QGRTGYP VDAGMR+LW TGW+HNR+R+
Sbjct: 299 NPDLATRNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWMHNRVRMAA 358
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL WR G +FWDTL+DAD + WQ+++GS D R+ +P Q K
Sbjct: 359 ASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIFNPVTQSKK 418
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FD G Y+RQ++PELA + + IH PW A A G+ YP+P++DL RER
Sbjct: 419 FDAAGNYLRQYIPELAGLEAKAIHEPWKA------ADGLH---GYPRPLVDLPGSRERAL 469
Query: 479 QAIFKM 484
A K+
Sbjct: 470 AAYQKL 475
>gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1]
gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1]
Length = 476
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 242/479 (50%), Gaps = 46/479 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+IVW R DLR+ DNPAL AA + D + VY +G G S+WWL SL+ L
Sbjct: 9 SIVWLRNDLRLSDNPALTAATSEDRPLVVVYIHDETGDGIRPLGSASKWWLHHSLTALDA 68
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+ LG +L L +T L + + AT V +N Y + D +K L E G++
Sbjct: 69 ALQKLGGQLTLSHGPAT-QVLPALVDELGATSVHWNRRYTAARDI-DAGLKASLREQGLT 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQ-AAGTIDGC 183
V+S+ G+LL EPW I + +G + F YW + + A P ++ AG+
Sbjct: 127 VESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTTTLRWLAGSPASD 186
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
I + L + L W+PG A L FV + L Y++ R + ++TS L
Sbjct: 187 DIAEWNLLPTRPDWAEGLR-ETWTPGEQGARNRLESFVTERLADYHR-RDEPAVDATSGL 244
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L FGE+S +++Q L + + + + +V FL +G RE+S L F+ P
Sbjct: 245 SPHLRFGEISPTQIWQRL---RGTGSTDVPNPARNNVAKFLSEIGWREFSTALLFDNPRL 301
Query: 304 HERPLLSNLKYFPWH------------ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
FPW A + +AWR+GRTG PLVDAGMRELW TG +H
Sbjct: 302 ATDSYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMRELWHTGTMH 361
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++V+SF +K LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +
Sbjct: 362 NRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGADAAPYFRVFN 421
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
P +Q KFDP GEYV +W+PEL NYP+PI+DL
Sbjct: 422 PILQQKKFDPAGEYVARWIPELGTK-------------------------NYPEPIVDL 455
>gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
HTCC2654]
Length = 475
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 247/480 (51%), Gaps = 25/480 (5%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M + I+WFRRDLR+ D+PAL AAA G V P++ +G G ++W L + L
Sbjct: 1 MSASTVILWFRRDLRLSDHPALWAAANAGLVIPLFIRDQSVDGL---GAAAKWRLGEGLR 57
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
G++L+ G +L+L + + L E I AT+V ++ LYDP ++ RD +K L E
Sbjct: 58 VFGEALEDRGLKLILRRGNAR-DVLREVIEETGATEVHWSRLYDPEAIERDTDVKSALKE 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI +S+ G L++EPW + + G + + +W ++ LP L
Sbjct: 117 AGIVAESHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDRDVD--EPLPTPDLTGPESWP 174
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D + D L + + + +L + +PG A L FV Q + Y +R ++T
Sbjct: 175 DSDDLADWALGADMNRGAG-VLAKYCNPGERAATSRLGSFVAQKIDAYKADRDLPAEDAT 233
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFLRAMGLREYSRYLCF 298
S +S YL +GE+S R+ LWA GK +L+ + RE++ +L +
Sbjct: 234 SRMSEYLTYGEISPRQ----------LWAAGARAMDAGKAGAEHYLKEVVWREFAYHLLY 283
Query: 299 NFPFTHERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+FP FPW D L KAW+QGRTG P VDA +RE++ TG++HNR R+
Sbjct: 284 HFPQMLTENWREGWDDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRARM 343
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+S+ K ++ WR G +F D L D D + +GWQ+++G PD R+ +PE QG
Sbjct: 344 IVASYLTKHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQG 403
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRE 475
KFDP+G Y ++W+ E P E ++A P K +E G NYP+ P++ L GRE
Sbjct: 404 EKFDPKGTYQKRWIAEGQTSPPETATDYFEAIPRSWK---MEPGGNYPREPVVGLKEGRE 460
>gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 463
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 230/468 (49%), Gaps = 32/468 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFR D RI DN AL A + G P ++ PG +RWWL ++ L ++
Sbjct: 9 TIVWFREDFRIADNMALLEAEKRGQ--PTLCIVILDDAHL-PGAAARWWLHGAIRSLDET 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ +G L +F+ + A L E + A V +N YDP D +IK L G++V
Sbjct: 66 LRGMGGALHVFRGAAR-AVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRARGLTV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EPW + + F A+W + P RLV A S+
Sbjct: 125 RSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPMPDSL 184
Query: 186 ----EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
E GL + L WSPG A L++F+ Y R G +TS
Sbjct: 185 ITRHEQDGLLPRHPDWAGGLRDM-WSPGEEEAGDQLSDFLRHDGAGYATARDFPGDEATS 243
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+L FG +S +V+ K FL +G R+++ L F P
Sbjct: 244 RLSPFLRFGHVSPAQVWHAA-------------TRKACPDKFLMELGWRDFAWSLLFFNP 290
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
R L PW D G AW++G+TGYPLVDAGMRELW TGW+HNR+R++ +SF
Sbjct: 291 DLATRNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVAASF 350
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+ WR G ++F DTL+D D + + WQ+ +G+ D R+ +P +Q KFDP
Sbjct: 351 LVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRKFDP 410
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
G Y+R+W+PELA + + IH PW++ YP PI+D
Sbjct: 411 HGVYIRRWVPELAHLSDDAIHAPWESGAT----------HPYPAPIVD 448
>gi|381399807|ref|ZP_09924825.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
gi|380772870|gb|EIC06556.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
Length = 448
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/437 (34%), Positives = 226/437 (51%), Gaps = 18/437 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSL 59
M + ++VWFR DLR+ DNPAL AA G + ++ P G +RWWL SL
Sbjct: 1 MPASPSLVWFRDDLRLADNPALRAAVDRGEPIIAVSVLDEQSAGVRPLGGAARWWLHHSL 60
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ LG+ L+ G+ LVL + ++ + + A V +N Y D +K L
Sbjct: 61 AELGERLREKGSGLVLRRGAAS-EVIPSLAREVGAGAVFWNRRYSASEREVDAGLKTSLR 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ V S+ LL+EPW + G + F +W C Q+ P LP R + +
Sbjct: 120 AGGLEVSSFAASLLFEPWTVRTGAGTPYGVFTPFWKACQQLPA-PREPLPEPRELHGVSS 178
Query: 180 IDGCS-IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
++D GL + LL R W+PG A + L F+ + + Y R + G
Sbjct: 179 YPASDDLDDWGLLPTRPDWAGGLLER-WTPGELAARRRLHAFLAEDVADYDHARDEPAGG 237
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS+LSP L +GELS +V+ + V FL +G RE++ + F
Sbjct: 238 ATSMLSPRLRWGELSPFQVWHA------------AMASEARVGGFLSEVGWREFAWHTLF 285
Query: 299 NFPFTHERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+ P + L FPW + +AW++G TG PLVDAGMRELWA+G++HNR+R++
Sbjct: 286 HAPDLATKNLKPAYDAFPWPRLNPSMLRAWQRGETGVPLVDAGMRELWASGFMHNRVRMV 345
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +PE+Q
Sbjct: 346 TASFLVKNLLIDWRRGEEWFWDTLVDADAASNPFNWQWVAGSGADAAPYFRIFNPELQAK 405
Query: 418 KFDPEGEYVRQWLPELA 434
KFDP+G YVR+W P+ A
Sbjct: 406 KFDPDGRYVREWAPDAA 422
>gi|421869192|ref|ZP_16300831.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia H111]
gi|358070832|emb|CCE51709.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia H111]
Length = 492
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/469 (34%), Positives = 238/469 (50%), Gaps = 10/469 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
IVWFR DLR+ D PAL A G + V+ G +RWWL SL+ L
Sbjct: 10 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 69
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G L+L + ++ + + A V +N Y D ++K L G++
Sbjct: 70 ALARHGGRLLLLRGDAQRE-IERLVRDTGAAAVYWNRRYAQPQRDADAALKTSLKARGVT 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV----QAAGTI 180
V+S NG LL EPWE+ + F AYW + + A + P ++V A
Sbjct: 129 VESSNGSLLNEPWEVLTGSDGPYQVFTAYWRAARRDRAVAAPLPAPGQIVFHSWPKAVRD 188
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+++ L L + + L +P + A L F+ L Y R + +T
Sbjct: 189 RALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGYADARDRPDRPAT 248
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSP+L FG +S R+V W A FL +G RE+S L ++F
Sbjct: 249 SRLSPFLRFGNVSPRQV----WHAVQGAASAGGAAYAADADKFLSELGWREFSYTLLYHF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P + PW D +AW++GRTGYPLVDAG+RELW TGW+HNR+R++V+S
Sbjct: 305 PTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVAS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G +F DTL+DAD + WQ+++G D R+ +P QG KFD
Sbjct: 365 FLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKFD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P+G YVR+W+PELA + IH PW+A P L+AAG+ LG++YP P+++
Sbjct: 425 PDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGVDYPAPLVE 473
>gi|71386194|gb|AAZ31072.1| cryptochrome 2B apoprotein [Medicago sativa]
Length = 154
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/152 (77%), Positives = 134/152 (88%), Gaps = 1/152 (0%)
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
AVK+LL+PW+WGMKYFWDTLLDADLE DILGWQYISGSLPDGHELERLD PEIQG+K+D
Sbjct: 1 AVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDS 60
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EGEYVRQWLPELAR+PTEWIHHPW+APP VL+A+GVELG NYPKPIID+DL RE+LTQAI
Sbjct: 61 EGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPKPIIDIDLAREQLTQAI 120
Query: 482 FKMWEMEAADNAMDSNGTNEVVFDNSDRIQTP 513
FKMWE EAA + S +EVV D+S+ + P
Sbjct: 121 FKMWEDEAASKSSTSENKHEVV-DDSENLSIP 151
>gi|399064694|ref|ZP_10747561.1| deoxyribodipyrimidine photolyase [Novosphingobium sp. AP12]
gi|398030435|gb|EJL23848.1| deoxyribodipyrimidine photolyase [Novosphingobium sp. AP12]
Length = 455
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 245/479 (51%), Gaps = 39/479 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
IVW RRDLR+ D PA+A AAR G V PVY C E + G SRWWL SLS L
Sbjct: 5 VIVWLRRDLRLSDQPAIAEAARKGPVIPVYI-CDDETPRHRAMGGASRWWLHHSLSSLDA 63
Query: 65 SLKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+L+ G+ L+L + S LA L E + AT+V H Y+P R+ EK V
Sbjct: 64 ALRDQGSRLILRRGRSDEVLAKLAE---EVGATEVDALHHYEP--WWRN---AEKAVAKH 115
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+++ ++G+ L P + G + + +W + L+ +M P + + A
Sbjct: 116 LTLCLHHGNYLAPPGSVTTGSGGLYKIYTPFW-RALRERMPPPEPQRRPQSIPAPTKWPK 174
Query: 183 CS-IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+ED GL + L G W PG A K L FVE+ Y R G + TS
Sbjct: 175 SDRLEDWGLLPSKPDWAGGLRGM-WEPGEGGARKRLHAFVEE-ASAYEAQRNLPGVDGTS 232
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
+LSP+LHFGE+S +V+ + + SV FL +G R+Y++ + FP
Sbjct: 233 MLSPHLHFGEVSPSQVWHAV------------ADAGGSVGTFLSEVGWRDYAQNVILQFP 280
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ FPW + +AW+ GRTGYP+VDAGMR+LW TGW+HNR+R+I +SF
Sbjct: 281 DYGSKYARDPFGDFPWRTSKADLEAWQLGRTGYPVVDAGMRQLWHTGWMHNRVRMIAASF 340
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K LL+ WR G K+FWDTL+DAD + + WQ+ +GS D R+ +P Q KFD
Sbjct: 341 LIKHLLIDWREGEKWFWDTLVDADYGNNSVNWQWTAGSGIDAQMFVRIMAPLTQSEKFD- 399
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+R+W+PELA + E IH P PP V +YP+ I+ RER A
Sbjct: 400 AASYIREWVPELADLSDEDIHDP---PPAVRPK-------DYPEKRIEHRDARERALSA 448
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 161/483 (33%), Positives = 254/483 (52%), Gaps = 26/483 (5%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTW---CPKEEGQFYPGRVSRWWLKQSL 59
NR IVW RRDLRI D+ ALA AA+ + P++ F P V ++ +SL
Sbjct: 2 NRIIVWHRRDLRIFDHSALAEAAKFADEIIPIFILDDDILLRREDFSPACVG--FMLESL 59
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L S ++G +L++ + + L L + +A + FN Y+P + +RD +++ +
Sbjct: 60 EALALSYANIGGKLIVRRGQ-VLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQSEFE 118
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+LG+ V+++ + + P + + G +T F Y K L + +I P + T
Sbjct: 119 KLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLALS---GNIPTPQPALTRIST 175
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ SI D +K S + +G P K L F+ Q++ Y + R N+
Sbjct: 176 PELPSIPLPKTSDIRKKFSVQPIVQGGEP---KGLKRLRAFLSQNIYHYKELRDFPATNA 232
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TSLLS L FG LS+R VF M+ + A E EG ++ F+ + RE+ + +
Sbjct: 233 TSLLSADLRFGTLSIRHVFHE-SMRLVPQASEPAREGIQT---FISELIWREFYFQILDH 288
Query: 300 FPFTHE---RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP + +P NLK W + F+AW+ G+TGYP+VDA MR L TGW+HNR+R+
Sbjct: 289 FPHVEKHSFKPEFENLK---WENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRM 345
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF K LL+ WRWG YF L+D DL + GWQ+ + + D R+ +P +Q
Sbjct: 346 IVASFLTKDLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQS 405
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWD---APPNVLKAAGVELGLNYPKPIIDLDLG 473
KFDP+GE++R+++PEL +P +IH P + P + + GV LG +YP PI++ +
Sbjct: 406 QKFDPKGEFIRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQ 465
Query: 474 RER 476
RE+
Sbjct: 466 REK 468
>gi|359778384|ref|ZP_09281653.1| deoxyribodipyrimidine photo-lyase [Arthrobacter globiformis NBRC
12137]
gi|359304301|dbj|GAB15482.1| deoxyribodipyrimidine photo-lyase [Arthrobacter globiformis NBRC
12137]
Length = 474
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 172/488 (35%), Positives = 238/488 (48%), Gaps = 29/488 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TIVW R DLR++DNPALAAAA V VY G G +RWWL SLS LG
Sbjct: 4 TIVWLRDDLRLDDNPALAAAAALPDPVTVVYILDEHSPGIRPLGAAARWWLHHSLSALGA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ G+ L+L + + +A+ E + A ++ +N Y D +KE GI
Sbjct: 64 SLEARGSRLLL-RRGAAASAIEELAAETGAGRLFWNRRYGQPERSIDAGVKEWAAGQGIE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQ-AAGTID-- 181
S+ +LL+EPW + G + F +W CL PP L Q AAGT
Sbjct: 123 ATSFQANLLFEPWTVRTGSGGPYKVFTPFWRTCLAGAEPRLPADPPDHLPQPAAGTSGRP 182
Query: 182 --GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
G ++ L S L W+PG A + L +F++ + Y K R G
Sbjct: 183 PAGDRLDSWRLLPRRPDWSGGLAA-AWTPGEDGAHERLEDFLDGPVEDYGKGRDLPGVEG 241
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFLRAMGLREYSRYLC 297
TS LSP+L FGE+S +V+ L E F V F +G RE+ L
Sbjct: 242 TSRLSPHLRFGEISPFRVWHSL---------REQFPRHAPADVGIFRSELGWREFCWQLL 292
Query: 298 FNFPFTHERPLLSNLKYFPWHADL-GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+ P + +F W +AW+QGRTGYPLVDAGMR+LW TGW+HNR+R+
Sbjct: 293 YENPDLATQNYRREFDHFAWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRM 352
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+SF VK +L WR G +FWDTL+DAD + WQ+++GS D R+ +P Q
Sbjct: 353 AAASFLVKNMLADWRVGEAWFWDTLVDADAANNPANWQWVAGSGADASPYFRIFNPVTQS 412
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD G Y+R ++PELA + +H PW P YP+P++ L RER
Sbjct: 413 KKFDAGGSYLRGYVPELADLDDRTVHEPWKNP---------SAAPGYPEPLVGLQESRER 463
Query: 477 LTQAIFKM 484
+ ++
Sbjct: 464 ALETYQRL 471
>gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
A6]
gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
A6]
Length = 475
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 171/488 (35%), Positives = 250/488 (51%), Gaps = 32/488 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLGQ 64
++VW R DLR++DNPAL+ AA G+ V +E P G SRWWL SL+ L
Sbjct: 8 SLVWLRDDLRLDDNPALSEAAHLGAPMTVVYVLDEESPGVRPLGGASRWWLHHSLAALAA 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISA-IKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L++ G+ LVL + ++ A ++ ++A A + +N Y D +KE GI
Sbjct: 68 VLEAKGSRLVLRRGKA--ADVISSLAAQTHAGHLFWNRRYGGPERDIDAGLKEWAAGNGI 125
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQ--MEPASILPPWRLVQAAGTID 181
S+ +LL+EPW I G + + +W CL +P I P L + A +
Sbjct: 126 EASSFQANLLFEPWTIKTGAGGPYKVYSPFWRACLAAGDIRDPLDI--PKDLPEPAASGR 183
Query: 182 GCSIED-LG---LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G D LG L S S L W PG A LT+F++ + Y R G
Sbjct: 184 GLPASDSLGSWKLLPTSPDWSGGL-AETWVPGEKGAVDRLTDFLDGPIEDYGTGRNIPGT 242
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSPYL FGE+S +V++ + + + V F +G RE++ +L
Sbjct: 243 EGTSRLSPYLRFGEVSPFRVWREI-------RRRHPRQVPADVGIFRSELGWREFNWHLL 295
Query: 298 FNFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++ P R + + F W + AW+QGRTGYPLVDAGMR+LW TGW+HNR+R+
Sbjct: 296 YHNPELATRSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRM 355
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+SF VK LL WR G ++FWDTL+DAD + WQ+++GS D R+ +P Q
Sbjct: 356 AAASFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPVTQS 415
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD G+Y+R+++PE+A + + IH PW A P+ YP+P+++L RER
Sbjct: 416 KKFDAGGDYLRRFIPEIAGLEGKAIHEPWTAEPD-----------GYPQPLVELPESRER 464
Query: 477 LTQAIFKM 484
A K+
Sbjct: 465 ALDAYQKL 472
>gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique
HTCC1062]
gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1062]
Length = 473
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 242/473 (51%), Gaps = 29/473 (6%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+ IVW R D RIE N ALA A ++ V +Y + PK + +WWL +SL L
Sbjct: 4 KAIVWIREDFRIEYNEALATATQNHEYVSAIYIYNPKNFDK--KREAQKWWLSKSLENLS 61
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKA---TKVVFNHLYDPVSLVRDHSIKEKLVE 120
LK L L E L LE +S +K V ++ +Y+P + + I++ ++
Sbjct: 62 IDLKKLNITL-----EVQLGDELEVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIK 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I + + G++L E E+ + G + F +W K Q + A P +L++ I
Sbjct: 117 NEIQYKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYISKA----PSKLIRVKSKI 172
Query: 181 DGCSIEDLGL---EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+I + E +K+ + + W P A K L E + + Y R G
Sbjct: 173 KKINIFKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE-SVTFFLRAMGLREYSRYL 296
N TS LSP+L FG++ V + +W K ++ + K+ ++ +G RE+S L
Sbjct: 233 NGTSKLSPFLKFGQIHV----------ETIWKKCQDIKVKKIGYRKYINELGWREFSHSL 282
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP + L + FPW + KAW+ G TGYP+VDAGMREL+ TGW+HNR+R+
Sbjct: 283 INYFPQMLKGNLRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRM 342
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF VK L + W G K+F + L+D + ++ WQ+++G D R+ +P +QG
Sbjct: 343 IVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQG 402
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
KFD +G Y ++W+PEL MP ++++ PW+ + V +G+NYPKPIID
Sbjct: 403 EKFDKDGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIID 455
>gi|444305910|ref|ZP_21141685.1| deoxyribodipyrimidine photo-lyase [Arthrobacter sp. SJCon]
gi|443481714|gb|ELT44634.1| deoxyribodipyrimidine photo-lyase [Arthrobacter sp. SJCon]
Length = 475
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 168/491 (34%), Positives = 235/491 (47%), Gaps = 38/491 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPV-YTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++VW R DLR++DNPALA AA G V Y + EG G +RWWL SL+ L
Sbjct: 8 SLVWLRDDLRLDDNPALAEAAGLGLPMTVLYILDEESEGIRPLGGAARWWLHHSLAALAA 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+S G+ LVL + +S A + + KA + +N Y D +K+ E GI
Sbjct: 68 DLESKGSRLVLRRGKSD-AIVRKLAGQTKAGHIFWNRRYSQPERTIDAGLKDWAGENGIH 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPW--------RLVQA 176
S+ +LL+EPW I G + + +W C M A I P
Sbjct: 127 ASSFQANLLFEPWTIRTGAGGPYKVYSPFWRAC----MASADIRDPLDAPAALPEPAASG 182
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
G ++ L S S L W PG A L +F++ + Y R G
Sbjct: 183 PGVPTSDTLASWKLLPTSPDWSTGL-AETWEPGEKGAADRLADFLDGPVEDYGTGRNIPG 241
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK--ESVTFFLRAMGLREYSR 294
TS LSP+L FGE+S +V++ + GK V F +G RE++
Sbjct: 242 TEGTSRLSPHLRFGEVSPFRVWREI---------RRRHPGKIPADVGIFRSELGWREFNW 292
Query: 295 YLCFNFPFTHERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L ++ P R F W AW+QG+TGYPLVDAGMR+LW TGW+HNR
Sbjct: 293 HLLYHNPDLATRNFRPAFDNFQWGRVSRSELAAWQQGKTGYPLVDAGMRQLWQTGWMHNR 352
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+ +SF VK LL WR G ++FWDTL+DAD + WQ+++GS D R+ +P
Sbjct: 353 VRMAAASFLVKNLLTDWRIGEEWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPV 412
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q KFD +G Y+R ++PEL + + IH PW A + YP P++DL
Sbjct: 413 TQSKKFDADGSYLRAFIPELQGLEGKQIHEPWTAGAD-----------GYPAPLVDLAES 461
Query: 474 RERLTQAIFKM 484
RER A K+
Sbjct: 462 RERALDAYQKL 472
>gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 166
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 142/166 (85%)
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPEL 433
D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166
>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 474
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 248/484 (51%), Gaps = 35/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR+DLR+ D+PAL+AA R G V PV+ ++ G +W L L+ L Q+
Sbjct: 9 LIWFRQDLRLSDHPALSAAVRSGRPVIPVFI---RDSLVDDLGAAPKWRLSLGLAALAQN 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G++LVL ++ L AL I A +V ++ YDP ++ RD IK L ELG++
Sbjct: 66 LEHKGSKLVL-RSGPALDALKALIDETGAREVYWSRAYDPDAIARDTHIKSVLTELGLTA 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EPW + + G F F W Q + P+ P RL +
Sbjct: 125 KSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDV-PSPDPAPERLAAPPLWPASEHL 183
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+D GL + + ++G+ G + A+ L F+E+ L Y R L + TS LS
Sbjct: 184 DDWGLGHAMRRGAG-IVGQHVQAGETAAEARLDAFMER-LDAYPAQRDALADDGTSHLSE 241
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
YL GE+ R V+ + K G FLR + RE++ +L ++ P
Sbjct: 242 YLALGEIGPRTVWHRV--------KGAALIGSIGADAFLRQLVWREFAYHLMYHTPHLLT 293
Query: 306 RPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ FPW+ D+ +AW RTG P+VDAG+RE++ TG +HNR R+IV+S+
Sbjct: 294 QNWRPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNRARMIVASYLT 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L+ W+ GM +F D L+D D + +GWQ+++GS PD R+ +P+ Q KFDP G
Sbjct: 354 KHLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQTQAEKFDPTG 413
Query: 424 EYVRQWL-------PELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
YVR+W+ P+ A E I W+ P+ YP+P++DL +GRER
Sbjct: 414 AYVRRWVAEGQSDPPKTALSYFEAIPRSWNLSPDD----------AYPQPVVDLKVGRER 463
Query: 477 LTQA 480
A
Sbjct: 464 ALAA 467
>gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
Length = 473
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 241/473 (50%), Gaps = 29/473 (6%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+ IVW R D RIE N ALA A ++ V +Y + PK + +WWL +SL L
Sbjct: 4 KAIVWIREDFRIEYNEALATATQNHEYVSAIYIYNPKNFDK--KREAQKWWLSKSLENLS 61
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKA---TKVVFNHLYDPVSLVRDHSIKEKLVE 120
LK L L E L LE +S +K V ++ +Y+P + + I++ ++
Sbjct: 62 IDLKKLNITL-----EVQLGDELEVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIK 116
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I + + G++L E E+ + G + F +W K Q + A P +L++ I
Sbjct: 117 NEIQYKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYISKA----PSKLIRVKSKI 172
Query: 181 DGCSIEDLGL---EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+I + E +K+ + + W P A K L E + + Y R G
Sbjct: 173 KKINIFKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE-SVTFFLRAMGLREYSRYL 296
N TS LSP+L FG++ V + +W K ++ + K+ ++ +G RE+S L
Sbjct: 233 NGTSKLSPFLKFGQIHV----------ETIWKKCQDIKVKKIGYRKYINELGWREFSHSL 282
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP + L + FPW + KAW+ G TGYP+VDAGMREL+ TGW+HNR+R+
Sbjct: 283 INYFPQMLKGNLRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRM 342
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF VK L + W G K+F + L+D + ++ WQ+++G D R+ +P +QG
Sbjct: 343 IVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQG 402
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
KFD G Y ++W+PEL MP ++++ PW+ + V +G+NYPKPI+D
Sbjct: 403 EKFDKAGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVD 455
>gi|341607429|gb|AEK83817.1| At4G08920-like protein [Capsella rubella]
gi|341607431|gb|AEK83818.1| At4G08920-like protein [Capsella rubella]
gi|341607433|gb|AEK83819.1| At4G08920-like protein [Capsella rubella]
gi|341607435|gb|AEK83820.1| At4G08920-like protein [Capsella rubella]
gi|341607437|gb|AEK83821.1| At4G08920-like protein [Capsella rubella]
gi|341607439|gb|AEK83822.1| At4G08920-like protein [Capsella rubella]
gi|341607441|gb|AEK83823.1| At4G08920-like protein [Capsella rubella]
gi|341607443|gb|AEK83824.1| At4G08920-like protein [Capsella rubella]
gi|341607445|gb|AEK83825.1| At4G08920-like protein [Capsella rubella]
gi|341607447|gb|AEK83826.1| At4G08920-like protein [Capsella rubella]
gi|341607449|gb|AEK83827.1| At4G08920-like protein [Capsella rubella]
gi|341607451|gb|AEK83828.1| At4G08920-like protein [Capsella rubella]
gi|341607453|gb|AEK83829.1| At4G08920-like protein [Capsella rubella]
gi|341607455|gb|AEK83830.1| At4G08920-like protein [Capsella rubella]
gi|341607457|gb|AEK83831.1| At4G08920-like protein [Capsella rubella]
gi|341607459|gb|AEK83832.1| At4G08920-like protein [Capsella rubella]
gi|341607461|gb|AEK83833.1| At4G08920-like protein [Capsella rubella]
gi|341607463|gb|AEK83834.1| At4G08920-like protein [Capsella rubella]
gi|341607465|gb|AEK83835.1| At4G08920-like protein [Capsella rubella]
gi|341607477|gb|AEK83841.1| At4G08920-like protein [Capsella rubella]
gi|341607479|gb|AEK83842.1| At4G08920-like protein [Capsella rubella]
gi|341607481|gb|AEK83843.1| At4G08920-like protein [Capsella rubella]
gi|341607483|gb|AEK83844.1| At4G08920-like protein [Capsella rubella]
gi|341607485|gb|AEK83845.1| At4G08920-like protein [Capsella rubella]
gi|341607487|gb|AEK83846.1| At4G08920-like protein [Capsella rubella]
gi|341607489|gb|AEK83847.1| At4G08920-like protein [Capsella rubella]
gi|341607491|gb|AEK83848.1| At4G08920-like protein [Capsella rubella]
gi|341607493|gb|AEK83849.1| At4G08920-like protein [Capsella rubella]
gi|341607495|gb|AEK83850.1| At4G08920-like protein [Capsella rubella]
gi|341607497|gb|AEK83851.1| At4G08920-like protein [Capsella rubella]
gi|341607499|gb|AEK83852.1| At4G08920-like protein [Capsella rubella]
gi|341607501|gb|AEK83853.1| At4G08920-like protein [Capsella rubella]
gi|341607507|gb|AEK83856.1| At4G08920-like protein [Capsella rubella]
gi|341607509|gb|AEK83857.1| At4G08920-like protein [Capsella rubella]
gi|341607511|gb|AEK83858.1| At4G08920-like protein [Capsella rubella]
gi|341607515|gb|AEK83860.1| At4G08920-like protein [Capsella rubella]
gi|341607519|gb|AEK83862.1| At4G08920-like protein [Capsella rubella]
gi|341607521|gb|AEK83863.1| At4G08920-like protein [Capsella rubella]
gi|341607523|gb|AEK83864.1| At4G08920-like protein [Capsella rubella]
gi|341607525|gb|AEK83865.1| At4G08920-like protein [Capsella rubella]
gi|341607527|gb|AEK83866.1| At4G08920-like protein [Capsella rubella]
gi|341607529|gb|AEK83867.1| At4G08920-like protein [Capsella rubella]
gi|341607531|gb|AEK83868.1| At4G08920-like protein [Capsella rubella]
gi|341607533|gb|AEK83869.1| At4G08920-like protein [Capsella rubella]
gi|341607535|gb|AEK83870.1| At4G08920-like protein [Capsella rubella]
gi|341607537|gb|AEK83871.1| At4G08920-like protein [Capsella rubella]
gi|341607539|gb|AEK83872.1| At4G08920-like protein [Capsella rubella]
gi|341607541|gb|AEK83873.1| At4G08920-like protein [Capsella rubella]
gi|341607543|gb|AEK83874.1| At4G08920-like protein [Capsella rubella]
gi|341607545|gb|AEK83875.1| At4G08920-like protein [Capsella rubella]
gi|341607547|gb|AEK83876.1| At4G08920-like protein [Capsella rubella]
gi|341607549|gb|AEK83877.1| At4G08920-like protein [Capsella rubella]
gi|341607551|gb|AEK83878.1| At4G08920-like protein [Capsella rubella]
gi|341607553|gb|AEK83879.1| At4G08920-like protein [Capsella rubella]
gi|341607555|gb|AEK83880.1| At4G08920-like protein [Capsella rubella]
gi|341607557|gb|AEK83881.1| At4G08920-like protein [Capsella rubella]
gi|341607559|gb|AEK83882.1| At4G08920-like protein [Capsella rubella]
gi|341607561|gb|AEK83883.1| At4G08920-like protein [Capsella rubella]
gi|341607563|gb|AEK83884.1| At4G08920-like protein [Capsella rubella]
gi|341607565|gb|AEK83885.1| At4G08920-like protein [Capsella rubella]
gi|341607567|gb|AEK83886.1| At4G08920-like protein [Capsella rubella]
gi|341607569|gb|AEK83887.1| At4G08920-like protein [Capsella rubella]
gi|341607571|gb|AEK83888.1| At4G08920-like protein [Capsella rubella]
gi|341607573|gb|AEK83889.1| At4G08920-like protein [Capsella rubella]
gi|341607575|gb|AEK83890.1| At4G08920-like protein [Capsella rubella]
gi|341607577|gb|AEK83891.1| At4G08920-like protein [Capsella rubella]
gi|341607579|gb|AEK83892.1| At4G08920-like protein [Capsella rubella]
gi|341607581|gb|AEK83893.1| At4G08920-like protein [Capsella rubella]
gi|341607583|gb|AEK83894.1| At4G08920-like protein [Capsella rubella]
gi|341607585|gb|AEK83895.1| At4G08920-like protein [Capsella rubella]
gi|341607587|gb|AEK83896.1| At4G08920-like protein [Capsella rubella]
gi|341607589|gb|AEK83897.1| At4G08920-like protein [Capsella rubella]
gi|341607591|gb|AEK83898.1| At4G08920-like protein [Capsella rubella]
gi|341607593|gb|AEK83899.1| At4G08920-like protein [Capsella rubella]
gi|341607595|gb|AEK83900.1| At4G08920-like protein [Capsella rubella]
gi|341607597|gb|AEK83901.1| At4G08920-like protein [Capsella rubella]
gi|341607599|gb|AEK83902.1| At4G08920-like protein [Capsella rubella]
gi|341607601|gb|AEK83903.1| At4G08920-like protein [Capsella rubella]
gi|341607603|gb|AEK83904.1| At4G08920-like protein [Capsella rubella]
gi|341607605|gb|AEK83905.1| At4G08920-like protein [Capsella rubella]
gi|341607607|gb|AEK83906.1| At4G08920-like protein [Capsella rubella]
gi|341607609|gb|AEK83907.1| At4G08920-like protein [Capsella rubella]
gi|341607611|gb|AEK83908.1| At4G08920-like protein [Capsella rubella]
gi|341607613|gb|AEK83909.1| At4G08920-like protein [Capsella rubella]
gi|341607615|gb|AEK83910.1| At4G08920-like protein [Capsella rubella]
gi|341607617|gb|AEK83911.1| At4G08920-like protein [Capsella rubella]
gi|341607619|gb|AEK83912.1| At4G08920-like protein [Capsella rubella]
gi|341607621|gb|AEK83913.1| At4G08920-like protein [Capsella rubella]
gi|341607623|gb|AEK83914.1| At4G08920-like protein [Capsella rubella]
gi|341607625|gb|AEK83915.1| At4G08920-like protein [Capsella rubella]
Length = 163
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/162 (74%), Positives = 141/162 (87%)
Query: 316 PWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMK 375
PW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMK
Sbjct: 1 PWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMK 60
Query: 376 YFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELAR 435
YFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R
Sbjct: 61 YFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSR 120
Query: 436 MPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
+PT+WIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL
Sbjct: 121 LPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARL 162
>gi|452751360|ref|ZP_21951106.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium JLT2015]
gi|451961510|gb|EMD83920.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium JLT2015]
Length = 468
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 170/486 (34%), Positives = 251/486 (51%), Gaps = 31/486 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TI+WFR DLR+ D A+ AAA DG V PVY G++ G RWWL SL L +S
Sbjct: 3 TIIWFREDLRLSDQAAVRAAAEDGPVVPVYVLDDTSPGKWKMGGAQRWWLHHSLKSLSES 62
Query: 66 LKSLGAELVLFKTEST--LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L+ G L+L K E++ + AL + + + V Y+P ++ + +L EL +
Sbjct: 63 LREKGLRLILLKGEASVKIGALADKLGIERVHAV---QHYEPWWKAQEEKLSNRL-ELCL 118
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ G LL P + + G + + +W + LQ M P + R +QA G
Sbjct: 119 ----HPGRLLAPPGSVTTKSGDPYKIYTPFW-RSLQGIMPPPEPVRRPRTMQAPDEWPGF 173
Query: 184 S-IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++D L + + W+PG A F ++ + Y + R TS
Sbjct: 174 DELDDWNLLPKDPDWAGGF--DFWTPGEHGARSRAHNFADE-VEDYNEGRNLPSRELTSR 230
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LH GE+S V+ + K W ++V FL + R++S + FP
Sbjct: 231 LSPHLHMGEISPADVWHIV-SKNRQW---------QTVEPFLSELAWRDFSTQVIDMFPD 280
Query: 303 ---THERPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
T R N+++ G +AW++GRTGYP+VDAGMRELWATGW+HNR+R+I
Sbjct: 281 YGDTSGRDHFRNMEWTDHREGEGREALRAWQRGRTGYPIVDAGMRELWATGWMHNRVRMI 340
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+ F +K LL+ WR G ++FWDTL+DAD + WQ+ +GS D H R+ +P+ Q
Sbjct: 341 AAQFLIKHLLIDWREGERWFWDTLVDADYGNNSQNWQWSAGSGIDSHPFYRMMNPKTQSP 400
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
K+D +Y+R+W+PEL +P IH PW+A L+AAGV LG YP+PI++ RER
Sbjct: 401 KWD-AADYIREWVPELKDLPDGAIHVPWEADEGALEAAGVTLGDTYPEPIVEHRAARERA 459
Query: 478 TQAIFK 483
A K
Sbjct: 460 LGAYRK 465
>gi|402823473|ref|ZP_10872896.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
gi|402262964|gb|EJU12904.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
Length = 455
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 170/481 (35%), Positives = 242/481 (50%), Gaps = 43/481 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVW RRDLR+ D PA+A AAR G V PVY + G SRWWL SL LG +
Sbjct: 5 VIVWLRRDLRLSDQPAIAEAARKGPVIPVYILDDETPRHRAMGGASRWWLHHSLESLGAA 64
Query: 66 LKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L+ G+ L+L + S LA L E A +V H Y+P R+ EK V +
Sbjct: 65 LQEKGSRLILRRGRSDEVLAKLAEETGA---QEVHALHHYEP--WWRN---AEKAVGKVL 116
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI--- 180
++ ++G+ L P + G + + +W + L+ +M P P R Q
Sbjct: 117 TLCLHHGNYLAPPGSVTTGSGGLYKIYTPFW-RALRERMPPHD---PQRRPQTIAVPSKW 172
Query: 181 -DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ ++ D L + + + W PG A K L FVE+ Y R G
Sbjct: 173 PESDTLPDWKLLPTTPDWAGGMRAM-WEPGEKGARKRLHAFVEE-ASAYEGQRNLPGVEG 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS+LSP+LHFGE+S +V+ + + SV FL +G R+Y++ +
Sbjct: 231 TSMLSPHLHFGEISPAQVWHAV------------ADAGGSVATFLGEIGWRDYAQNVILQ 278
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+P R FPW + +AW+QGRTGYP+VDAGMR+LW TGW+HNR+R+I +
Sbjct: 279 YPDYGGRYARDPFGAFPWRTSTRDLEAWQQGRTGYPIVDAGMRQLWHTGWMHNRVRMIAA 338
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G ++FWDTL+DAD + + WQ+ +GS D + R+ +P Q KF
Sbjct: 339 SFLVKHLLIDWRAGEQWFWDTLVDADYGSNAVNWQWTAGSGVDANMFVRIMAPLTQSEKF 398
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D G Y+R+W+PELA + IH PP+ + G YP +I+ RER
Sbjct: 399 DAAG-YIREWVPELADLSDADIHD----PPSGKRPKG------YPDRLIEHRDARERALS 447
Query: 480 A 480
A
Sbjct: 448 A 448
>gi|357974946|ref|ZP_09138917.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. KC8]
Length = 456
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 242/472 (51%), Gaps = 31/472 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+I+WFR+DLR+ D AL AAA +G V +Y + G + G RWWL SLS L +
Sbjct: 3 SILWFRQDLRLADQRALVAAASEGPVVCLYVLDDERPGPWRIGGAQRWWLHHSLSALADA 62
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L GA+L+L + ++ + +L + A +V Y+P + ++ ++ I +
Sbjct: 63 LVDRGAQLILRRGDA-VEEVLRLACEVGAARVHALRHYEPWWQDAEAALADR-----IDL 116
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCS 184
++G L P + G + F +W + L+ QM P LP P R+ A D +
Sbjct: 117 HLHDGGTLAPPDRVRTGGGGRYRVFTPFW-RALKEQMPPELPLPAPDRIATVADHPDSDA 175
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++D L + + A G W+PG A L F+ ++ Y R +S LS
Sbjct: 176 LDDWALLPTAPDWA-AGFGDYWAPGEEGAKDALRNFLP-NITDYDTARNLPSIAGSSRLS 233
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S V+ AK E + FLR +G R+++ + P
Sbjct: 234 PHLHFGEISPATVWHHA-------AKRARGEAEP----FLREVGWRDFAANVIDILPDYG 282
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
R FPW +F AW +GRTGYP+VDAGMRELWATGW+HNR+R+I +SF K
Sbjct: 283 RRNGREAWDDFPWRDAEADFAAWTKGRTGYPIVDAGMRELWATGWMHNRVRMIAASFLTK 342
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+ WR G ++FWDTL+DA+ + + WQ+I+G+ D + R+ +P +Q KFD
Sbjct: 343 HLLIDWRRGERWFWDTLVDANYANNAVNWQWIAGTGIDSNPFGRIMAPILQSEKFD-AAA 401
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
Y+R+W+PELA++P WIH P AG YP P+I GR R
Sbjct: 402 YIRKWVPELAKVPEPWIHDP--------HEAGCAPK-GYPAPLIGHRAGRAR 444
>gi|421851103|ref|ZP_16284024.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
gi|371458034|dbj|GAB29227.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
Length = 473
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/482 (32%), Positives = 233/482 (48%), Gaps = 39/482 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEG-QFYPGRVSRWWLKQSLSYLGQ 64
+V R D R+ DNPAL AA G PV ++ Q G W + + + L
Sbjct: 10 VLVLLRDDYRVADNPALHAACATGQ--PVLCAYVQDAALQDASGTRIADWAQAACAQLAT 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G L + + L+ + A+ AT V +N YD + D + L + G++
Sbjct: 68 SLHEQGQTLFMLSGPTRLS-VPALAQAVHATDVFWNRRYDAPGIAADTDVHASLKKQGVT 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI---------LPPWRLVQ 175
V S G LL+EPW I + G + F A+W + P + P R +
Sbjct: 127 VHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARNLPEPPPPLPAPDIRGKNYAPARTLT 186
Query: 176 AAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
DG + +G + + L GW+ G A L F+E L Y R +
Sbjct: 187 LP---DGVRLHRVGTQPPA-------LPSGWTSGEKAAHANLHRFIENALADYETQRDRA 236
Query: 236 GG-NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TSLLSPY+ G++SVR+++ I A+ +N FL +G R+++
Sbjct: 237 DAPHGTSLLSPYIRVGQISVRQIWHA-----IRHAEHQNPHLATPAEKFLAELGWRDFAW 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
F P R L + + PW AD + AW+QG+TG+PLVDAGMR+L TGW+HNR+
Sbjct: 292 MQMFTTPDLATRNLRAEFDHMPWRADAADLAAWQQGQTGFPLVDAGMRQLARTGWMHNRV 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R++V+SF K LL WR G ++F+ LLDAD + + WQ+ +G+ D R+ +P
Sbjct: 352 RMVVASFLTKHLLTDWREGERWFYAQLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVG 411
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q K+DP G+Y+R W+PEL + + IH PW + L YP PI+DL LGR
Sbjct: 412 QSEKYDPAGQYIRTWVPELVALDNKTIHTPWKSTQR----------LKYPAPIVDLKLGR 461
Query: 475 ER 476
R
Sbjct: 462 LR 463
>gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
Length = 470
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 247/482 (51%), Gaps = 29/482 (6%)
Query: 7 IVWFRRDLRIEDNPALA---AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
I W R D R+ DN AL+ ++ + VF Y KE+ +F + +WWL ++L
Sbjct: 6 IYWLRNDFRLNDNEALSYLLSSENNDFVFFSYD---KEKYKFRSAQ--KWWLYKTLKIFD 60
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ L +G + ++ + + + L + I K T+V +N ++ P + +++I + L + I
Sbjct: 61 KKLSEIGVKFIV-ENDLEYSFLEKIIKNKKITEVCWNKIFSPEEIAIENNIIKLLEKNNI 119
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI--- 180
+ ++ +LL P + + F F +W + ++ L+++ ++
Sbjct: 120 KYKIFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKNYKYKK--NLIKSKKSLKNN 177
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ IE + +K + W PG A K + F + + Y KNR T
Sbjct: 178 NQSKIETIL----PKKKWYEKFEKYWFPGEDIALKKIKSFNSEKINFYDKNRDFPSIEGT 233
Query: 241 SLLSPYLHFGELSVRKVF-QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S LSP+L FGE+S +K++ +C +K K VT FL +G RE++ +L +
Sbjct: 234 SKLSPHLAFGEISPKKIYDECTKIKN----------KKIGVTKFLNEIGWREFAYHLINH 283
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP ++ L N FPW + W++G TGYP+VDA M++L+ TGW+HNR+R++V
Sbjct: 284 FPIMLKKNLRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVG 343
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK L + W G KYF DTLLD D ++ GWQ+I+G D R+ +P QG KF
Sbjct: 344 SFLVKHLRINWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFRIFNPITQGEKF 403
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP GE+V+ W+P L ++P ++IH PW+ P K L +Y +PI+D + RE +
Sbjct: 404 DPNGEFVKYWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIVDHKIAREAALK 463
Query: 480 AI 481
A
Sbjct: 464 AF 465
>gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis]
Length = 862
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 175/565 (30%), Positives = 262/565 (46%), Gaps = 54/565 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEE-GQFYP---GRVSRWWLKQSLS 60
+VWFRRDLR+ DNPAL +A G V PV+ WC EE GQ + G +++WL +L
Sbjct: 232 VLVWFRRDLRLHDNPALISALEHGVPVIPVFLWCINEETGQNFTLATGGATKYWLHHALL 291
Query: 61 YLGQSL-KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L QSL + G+ ++ S L+ + A ++ N +Y+P RD I E L
Sbjct: 292 KLNQSLIQRFGSHIIFRVARSCEEELVSLVHETGADTIIINAVYEPWLKERDDLISETLR 351
Query: 120 ELGISVQSYNGDLLYEPWEIYDE----RGHAFTTFDAYWDKCLQMQMEPASIL--PPWRL 173
G+ ++ ++ LYEP + E RG + + C + P + P L
Sbjct: 352 RHGVELKKHHSYCLYEPDSVSTEGVGLRG--IGSVSHFMSCCKRNNSAPIGMPLDAPRCL 409
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLG------RGWSPGWSNADKVLTEFVEQHLLR 227
+ ++ L L + L+ W A L F++ +
Sbjct: 410 PAPCNWPESDHLDTLELGKMPHRKDGTLIDWAVTIRESWDFSEDGAYTCLANFLQDGVKH 469
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y K + TS +SPYLHFG++S R V E + K++V FLR +
Sbjct: 470 YEKESGRADKPYTSHISPYLHFGQISPRTVLH------------EAYFTKKNVPKFLRKL 517
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
R+ + +L FP P+ K W +DL + +AW++G TGYPLVDA MRELW T
Sbjct: 518 AWRDLAYWLLILFPDMPSEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLVDAAMRELWLT 577
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+ N R +V+SF V L + W G ++F DTLLDAD+ + + WQ +G +
Sbjct: 578 GWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQ--NGGMSGLDHWN 635
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
+ P DP G YVR+W PELA +P E+IH PW P+ L+ AGV LG NYP I
Sbjct: 636 FVMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKPWKCAPSQLRRAGVILGRNYPHRI 695
Query: 468 I-DLDLGRERLTQAIFKMW--------EMEAADNAM-----------DSNGTNEVVFDNS 507
+ DL+ RE+ + + ++ E+ D ++G +EVV + +
Sbjct: 696 VLDLEERREQSLKDVVEVRKKHLEYLDEVSGCDMVQIPDQLLALTLGHTSGEDEVVRNRT 755
Query: 508 DRIQTPAIPQVVLREKSTCPTISSN 532
P I + + K+ P N
Sbjct: 756 GSFLLPVITRKEFKYKTLQPDTKDN 780
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 161/473 (34%), Positives = 241/473 (50%), Gaps = 19/473 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAA--RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I WFRRDLR+ DN AL AAA G+V PV+ + G + +L SL+ L
Sbjct: 3 IHWFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLTALDG 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+SLG LVL + E L L+ + A V +N Y P ++ RD +IK +L G
Sbjct: 63 ELRSLGLHLVLRRGEP-LTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRAAGYR 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDGC 183
+SY +++E E+ G +T + Y + +++ EP + + V I
Sbjct: 122 AESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVRV----QGVPELTAIPLP 177
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ + L ++ ++ + R ++ G + A L F+ + Y R + TS L
Sbjct: 178 ASDPLPALNDLLPTAPTSVPR-FATGETAARAALEHFIHNAIANYATARDLVAIAGTSRL 236
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SPYL FG LS R QC+ + + G ES ++ + RE+ + ++FP
Sbjct: 237 SPYLRFGVLSPR---QCVVAAR----AAPSGPGPES---WIGELIWREFYIQVLYHFPHA 286
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
W D F AW+QGRTGYP+VDA MR+L GW+HNR R+IV+SF
Sbjct: 287 LRGSFKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIVASFLT 346
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WRWG ++F L+D D + GWQ+ +G+ D R+ +P QG KFDP+G
Sbjct: 347 KDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQKFDPDG 406
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
YVR+++PELA +PT +IH P PP+ AGV++G +Y P++D R R
Sbjct: 407 AYVRRYVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVVDHATQRLR 459
>gi|421852148|ref|ZP_16284838.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371479515|dbj|GAB30041.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 473
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 159/483 (32%), Positives = 233/483 (48%), Gaps = 41/483 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+V R D R+ DNPAL AA G V Y + F G W + + + L
Sbjct: 10 VLVLLRDDYRVADNPALHAACATGQPVLCAYVQDAALQDAF--GTRIADWAQAACAQLAA 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G L + + L+ + A+ AT V +N YD + D + L + G++
Sbjct: 68 SLHEQGQTLFMLSGPTRLS-VPTLAQAVHATDVFWNRRYDAPGIAADTDVHASLKKQGVT 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC----------LQMQMEPASILPPWRLV 174
V S G LL+EPW I + G + F A+W M + P L
Sbjct: 127 VHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARNLPEPPPPLPAPDMRGKNYAPARTLT 186
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
DG + +G + + L GW+ G A L F+E L Y R +
Sbjct: 187 LP----DGMRLHRVGTKPPA-------LPPGWTSGEKAAHANLHRFIENALADYETQRDR 235
Query: 235 LGG-NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TSLLSPY+ G++SVR+++ I A+ +N + FL +G R+++
Sbjct: 236 ADAPHGTSLLSPYIRVGQISVRQIWHA-----IRHAEHQNPHLATAAEKFLAELGWRDFA 290
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
F P R L + + PW AD + AW+QG+TG+PLVDAGMR+L TGW+HNR
Sbjct: 291 WMQMFTTPDLATRNLRAEFDHMPWRADAADLAAWQQGQTGFPLVDAGMRQLARTGWMHNR 350
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R++V+SF K LL WR G ++F+ LLDAD + + WQ+ +G+ D R+ +P
Sbjct: 351 VRMVVASFLTKHLLTDWREGERWFYAQLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPV 410
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q K+DP G+Y+R W+PELA + + IH PW + + L YP PI+DL LG
Sbjct: 411 GQSEKYDPAGQYIRTWVPELAALDNKTIHTPWKSTQH----------LKYPAPIVDLKLG 460
Query: 474 RER 476
R R
Sbjct: 461 RLR 463
>gi|341607467|gb|AEK83836.1| At4G08920-like protein [Capsella rubella]
gi|341607469|gb|AEK83837.1| At4G08920-like protein [Capsella rubella]
gi|341607471|gb|AEK83838.1| At4G08920-like protein [Capsella rubella]
gi|341607503|gb|AEK83854.1| At4G08920-like protein [Capsella rubella]
gi|341607505|gb|AEK83855.1| At4G08920-like protein [Capsella rubella]
Length = 161
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/159 (74%), Positives = 139/159 (87%)
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFW
Sbjct: 2 VDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFW 61
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
DTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT
Sbjct: 62 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPT 121
Query: 439 EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
+WIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL
Sbjct: 122 DWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARL 160
>gi|341607473|gb|AEK83839.1| At4G08920-like protein [Capsella rubella]
gi|341607475|gb|AEK83840.1| At4G08920-like protein [Capsella rubella]
gi|341607513|gb|AEK83859.1| At4G08920-like protein [Capsella rubella]
gi|341607517|gb|AEK83861.1| At4G08920-like protein [Capsella rubella]
Length = 160
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 118/159 (74%), Positives = 139/159 (87%)
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFW
Sbjct: 1 VDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFW 60
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
DTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT
Sbjct: 61 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPT 120
Query: 439 EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
+WIHHPW+AP +VL+AAG+ELG NYP+PI+ LD + RL
Sbjct: 121 DWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARL 159
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/476 (33%), Positives = 237/476 (49%), Gaps = 25/476 (5%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
R + WFRRDLR++DN AL AA V PV+ + + G V +L +SL L
Sbjct: 3 KRILCWFRRDLRLDDNTALLAAYAAAEEVVPVFIFDDAILSRPDTGAVRVAFLLESLRNL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
++L++ G+ L+L + L + ++ A+ V FN +P +L RD ++ L E
Sbjct: 63 DENLRARGSRLLLRRGRPE-HVLAQLVTETAASAVYFNRDVEPFALARDARVRAHL-EGR 120
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+V+ ++ L P + + G +T F Y L + + P A D
Sbjct: 121 CAVEGFDDGGLTAPEAVRTKAGTPYTVFTPYRQAVLAQPIPRPRLAPAMLRTPADVPSDP 180
Query: 183 -CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
S++DLG G ++A L F++ L RY R L + TS
Sbjct: 181 WPSLKDLGFATSVSPPPG---------GETSAQARLQGFIQNGLARYATERDVLSADGTS 231
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENF-EGKESVTFFLRAMGLREYSRYLCFNF 300
LSPYL FG LS R+ + WA E EG + ++ + R++ R + F+F
Sbjct: 232 RLSPYLRFGCLSPRRAY---------WAAREAVPEGSPGMESWIAELIWRDFYRQILFHF 282
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P+ W + F W QG+TG+P+VDA MR+L TGW+HNR R+IV+S
Sbjct: 283 PYVETGAFRRAYDDLAWENNASWFDLWCQGKTGFPIVDAAMRQLLTTGWMHNRARMIVAS 342
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WRWG ++F L+D DL + GWQ+ + + D R+ +P QG KFD
Sbjct: 343 FLTKDLLIDWRWGERHFMKHLVDGDLAANNGGWQWAASTGTDAQPYFRIFNPTAQGKKFD 402
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
P G YVRQ++PEL +P WIH P PP+V +A +G++YP P++ D GR+R
Sbjct: 403 PTGAYVRQYVPELRAVPDRWIHEPSRMPPDVQRAFRCVIGVDYPAPLV--DHGRQR 456
>gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
Length = 522
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 232/483 (48%), Gaps = 41/483 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEG-QFYPGRVSRWWLKQSLSYLGQ 64
+V R D R+ DNPAL AA G PV ++ Q P W + + + L
Sbjct: 59 VLVLLRDDYRVADNPALHAACATGQ--PVLCAYVQDAALQDAPTTRIAGWAQAACAQLAT 116
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL G L++ + L+ + AI AT V +N YD + D + L + G++
Sbjct: 117 SLHKQGQTLLMLSGPTRLS-VPALAQAINATDVFWNRRYDAPGIAADTDVHASLKKQGVT 175
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC----------LQMQMEPASILPPWRLV 174
V S G LL+EPW I + G + F A+W M S +P
Sbjct: 176 VHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARDLPEPPPPLPAPDMHGKSYVP----A 231
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+A +G + +G + GW+ G A L F+E L Y R +
Sbjct: 232 RALNLPEGVRLARVGTQMPPALP-------GWTSGEQCAHTNLHRFIENALEDYETQRDR 284
Query: 235 L-GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TSLLSPY+ G++SVR+++ I A + + FL +G R+++
Sbjct: 285 TDATHGTSLLSPYIRVGQISVRQIWHA-----IRHAAHLHPQLATDAEKFLAELGWRDFA 339
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
F P R L + + PW D + AW+QG+TG+PLVDAGMR+L TGW+HNR
Sbjct: 340 WMQMFTTPDLATRNLRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWMHNR 399
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R++V+SF K LL W+ G ++F+ LLDAD + + WQ+ +G+ D R+ +P
Sbjct: 400 VRMVVASFLTKHLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPV 459
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q K+DP G+Y+R W+PELA + + IH PW + LNYP PI+DL LG
Sbjct: 460 GQSEKYDPLGQYIRTWVPELAALDNKTIHTPWKSAQR----------LNYPPPIVDLKLG 509
Query: 474 RER 476
R R
Sbjct: 510 RLR 512
>gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 162
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/162 (72%), Positives = 138/162 (85%)
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+W
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162
>gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella]
gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella]
gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella]
gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella]
gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella]
gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella]
gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella]
gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella]
gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella]
gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella]
gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella]
gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella]
gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella]
gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella]
gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella]
gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella]
gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella]
gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella]
gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella]
gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella]
gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|341606525|gb|AEK83365.1| At4G08920-like protein [Capsella grandiflora]
gi|341606527|gb|AEK83366.1| At4G08920-like protein [Capsella grandiflora]
gi|341606529|gb|AEK83367.1| At4G08920-like protein [Capsella grandiflora]
gi|341606531|gb|AEK83368.1| At4G08920-like protein [Capsella grandiflora]
gi|341606533|gb|AEK83369.1| At4G08920-like protein [Capsella grandiflora]
gi|341606535|gb|AEK83370.1| At4G08920-like protein [Capsella grandiflora]
gi|341606537|gb|AEK83371.1| At4G08920-like protein [Capsella grandiflora]
gi|341606539|gb|AEK83372.1| At4G08920-like protein [Capsella grandiflora]
gi|341606545|gb|AEK83375.1| At4G08920-like protein [Capsella grandiflora]
gi|341606547|gb|AEK83376.1| At4G08920-like protein [Capsella grandiflora]
gi|341606549|gb|AEK83377.1| At4G08920-like protein [Capsella grandiflora]
gi|341606551|gb|AEK83378.1| At4G08920-like protein [Capsella grandiflora]
gi|341606553|gb|AEK83379.1| At4G08920-like protein [Capsella grandiflora]
gi|341606555|gb|AEK83380.1| At4G08920-like protein [Capsella grandiflora]
gi|341606557|gb|AEK83381.1| At4G08920-like protein [Capsella grandiflora]
gi|341606559|gb|AEK83382.1| At4G08920-like protein [Capsella grandiflora]
gi|341606561|gb|AEK83383.1| At4G08920-like protein [Capsella grandiflora]
gi|341606563|gb|AEK83384.1| At4G08920-like protein [Capsella grandiflora]
gi|341606565|gb|AEK83385.1| At4G08920-like protein [Capsella grandiflora]
gi|341606567|gb|AEK83386.1| At4G08920-like protein [Capsella grandiflora]
gi|341606569|gb|AEK83387.1| At4G08920-like protein [Capsella grandiflora]
gi|341606571|gb|AEK83388.1| At4G08920-like protein [Capsella grandiflora]
gi|341606573|gb|AEK83389.1| At4G08920-like protein [Capsella grandiflora]
gi|341606575|gb|AEK83390.1| At4G08920-like protein [Capsella grandiflora]
gi|341606577|gb|AEK83391.1| At4G08920-like protein [Capsella grandiflora]
gi|341606579|gb|AEK83392.1| At4G08920-like protein [Capsella grandiflora]
gi|341606581|gb|AEK83393.1| At4G08920-like protein [Capsella grandiflora]
gi|341606583|gb|AEK83394.1| At4G08920-like protein [Capsella grandiflora]
gi|341606585|gb|AEK83395.1| At4G08920-like protein [Capsella grandiflora]
gi|341606587|gb|AEK83396.1| At4G08920-like protein [Capsella grandiflora]
gi|341606589|gb|AEK83397.1| At4G08920-like protein [Capsella grandiflora]
gi|341606591|gb|AEK83398.1| At4G08920-like protein [Capsella grandiflora]
gi|341606593|gb|AEK83399.1| At4G08920-like protein [Capsella grandiflora]
gi|341606595|gb|AEK83400.1| At4G08920-like protein [Capsella grandiflora]
gi|341606597|gb|AEK83401.1| At4G08920-like protein [Capsella grandiflora]
gi|341606599|gb|AEK83402.1| At4G08920-like protein [Capsella grandiflora]
gi|341606601|gb|AEK83403.1| At4G08920-like protein [Capsella grandiflora]
gi|341606603|gb|AEK83404.1| At4G08920-like protein [Capsella grandiflora]
gi|341606605|gb|AEK83405.1| At4G08920-like protein [Capsella grandiflora]
gi|341606607|gb|AEK83406.1| At4G08920-like protein [Capsella grandiflora]
gi|341606609|gb|AEK83407.1| At4G08920-like protein [Capsella grandiflora]
gi|341606611|gb|AEK83408.1| At4G08920-like protein [Capsella grandiflora]
gi|341606613|gb|AEK83409.1| At4G08920-like protein [Capsella grandiflora]
gi|341606615|gb|AEK83410.1| At4G08920-like protein [Capsella grandiflora]
gi|341606617|gb|AEK83411.1| At4G08920-like protein [Capsella grandiflora]
gi|341606619|gb|AEK83412.1| At4G08920-like protein [Capsella grandiflora]
gi|341606621|gb|AEK83413.1| At4G08920-like protein [Capsella grandiflora]
gi|341606623|gb|AEK83414.1| At4G08920-like protein [Capsella grandiflora]
gi|341606625|gb|AEK83415.1| At4G08920-like protein [Capsella grandiflora]
gi|341606627|gb|AEK83416.1| At4G08920-like protein [Capsella grandiflora]
gi|341606629|gb|AEK83417.1| At4G08920-like protein [Capsella grandiflora]
gi|341606631|gb|AEK83418.1| At4G08920-like protein [Capsella grandiflora]
gi|341606633|gb|AEK83419.1| At4G08920-like protein [Capsella grandiflora]
gi|341606635|gb|AEK83420.1| At4G08920-like protein [Capsella grandiflora]
gi|341606637|gb|AEK83421.1| At4G08920-like protein [Capsella grandiflora]
gi|341606639|gb|AEK83422.1| At4G08920-like protein [Capsella grandiflora]
gi|341606641|gb|AEK83423.1| At4G08920-like protein [Capsella grandiflora]
gi|341606643|gb|AEK83424.1| At4G08920-like protein [Capsella grandiflora]
gi|341606645|gb|AEK83425.1| At4G08920-like protein [Capsella grandiflora]
gi|341606647|gb|AEK83426.1| At4G08920-like protein [Capsella grandiflora]
gi|341606649|gb|AEK83427.1| At4G08920-like protein [Capsella grandiflora]
gi|341606651|gb|AEK83428.1| At4G08920-like protein [Capsella grandiflora]
gi|341606653|gb|AEK83429.1| At4G08920-like protein [Capsella grandiflora]
gi|341606655|gb|AEK83430.1| At4G08920-like protein [Capsella grandiflora]
gi|341606657|gb|AEK83431.1| At4G08920-like protein [Capsella grandiflora]
gi|341606659|gb|AEK83432.1| At4G08920-like protein [Capsella grandiflora]
gi|341606661|gb|AEK83433.1| At4G08920-like protein [Capsella grandiflora]
gi|341606663|gb|AEK83434.1| At4G08920-like protein [Capsella grandiflora]
gi|341606665|gb|AEK83435.1| At4G08920-like protein [Capsella grandiflora]
gi|397136696|gb|AFO11856.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136698|gb|AFO11857.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136700|gb|AFO11858.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136702|gb|AFO11859.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136704|gb|AFO11860.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136706|gb|AFO11861.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136708|gb|AFO11862.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136710|gb|AFO11863.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136712|gb|AFO11864.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136714|gb|AFO11865.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136716|gb|AFO11866.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136718|gb|AFO11867.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136720|gb|AFO11868.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136722|gb|AFO11869.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136724|gb|AFO11870.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136726|gb|AFO11871.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136728|gb|AFO11872.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136730|gb|AFO11873.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136732|gb|AFO11874.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136734|gb|AFO11875.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136736|gb|AFO11876.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136738|gb|AFO11877.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136740|gb|AFO11878.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136742|gb|AFO11879.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136744|gb|AFO11880.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136746|gb|AFO11881.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136748|gb|AFO11882.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136750|gb|AFO11883.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136752|gb|AFO11884.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136754|gb|AFO11885.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136756|gb|AFO11886.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136758|gb|AFO11887.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136760|gb|AFO11888.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136762|gb|AFO11889.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136764|gb|AFO11890.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136766|gb|AFO11891.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136768|gb|AFO11892.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136770|gb|AFO11893.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136772|gb|AFO11894.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136774|gb|AFO11895.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136776|gb|AFO11896.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136778|gb|AFO11897.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136780|gb|AFO11898.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136782|gb|AFO11899.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136784|gb|AFO11900.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136786|gb|AFO11901.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136788|gb|AFO11902.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136790|gb|AFO11903.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136792|gb|AFO11904.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136794|gb|AFO11905.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136796|gb|AFO11906.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136798|gb|AFO11907.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136800|gb|AFO11908.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136802|gb|AFO11909.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136804|gb|AFO11910.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136806|gb|AFO11911.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136808|gb|AFO11912.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136810|gb|AFO11913.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136812|gb|AFO11914.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136814|gb|AFO11915.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136816|gb|AFO11916.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136818|gb|AFO11917.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136820|gb|AFO11918.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136822|gb|AFO11919.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136824|gb|AFO11920.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136826|gb|AFO11921.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136828|gb|AFO11922.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136830|gb|AFO11923.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136832|gb|AFO11924.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136834|gb|AFO11925.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136836|gb|AFO11926.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136840|gb|AFO11928.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136842|gb|AFO11929.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136844|gb|AFO11930.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136846|gb|AFO11931.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136848|gb|AFO11932.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136850|gb|AFO11933.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136852|gb|AFO11934.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136854|gb|AFO11935.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136856|gb|AFO11936.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136858|gb|AFO11937.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136860|gb|AFO11938.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136862|gb|AFO11939.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136864|gb|AFO11940.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136866|gb|AFO11941.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136868|gb|AFO11942.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136870|gb|AFO11943.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136872|gb|AFO11944.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136874|gb|AFO11945.1| CRY1, partial [Capsella rubella]
gi|397136876|gb|AFO11946.1| CRY1, partial [Capsella rubella]
gi|397136878|gb|AFO11947.1| CRY1, partial [Capsella rubella]
gi|397136880|gb|AFO11948.1| CRY1, partial [Capsella rubella]
gi|397136882|gb|AFO11949.1| CRY1, partial [Capsella rubella]
gi|397136884|gb|AFO11950.1| CRY1, partial [Capsella rubella]
gi|397136886|gb|AFO11951.1| CRY1, partial [Capsella rubella]
gi|397136888|gb|AFO11952.1| CRY1, partial [Capsella rubella]
gi|397136890|gb|AFO11953.1| CRY1, partial [Capsella rubella]
gi|397136892|gb|AFO11954.1| CRY1, partial [Capsella rubella]
gi|397136894|gb|AFO11955.1| CRY1, partial [Capsella rubella]
gi|397136896|gb|AFO11956.1| CRY1, partial [Capsella rubella]
gi|397136898|gb|AFO11957.1| CRY1, partial [Capsella rubella]
gi|397136900|gb|AFO11958.1| CRY1, partial [Capsella rubella]
gi|397136902|gb|AFO11959.1| CRY1, partial [Capsella rubella]
gi|397136904|gb|AFO11960.1| CRY1, partial [Capsella rubella]
gi|397136906|gb|AFO11961.1| CRY1, partial [Capsella rubella]
gi|397136908|gb|AFO11962.1| CRY1, partial [Capsella rubella]
gi|397136910|gb|AFO11963.1| CRY1, partial [Capsella rubella]
gi|397136912|gb|AFO11964.1| CRY1, partial [Capsella rubella]
gi|397136914|gb|AFO11965.1| CRY1, partial [Capsella rubella]
Length = 155
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/153 (75%), Positives = 137/153 (89%)
Query: 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLD 383
FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLD
Sbjct: 3 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62
Query: 384 ADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHH 443
ADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHH
Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122
Query: 444 PWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
PW+AP +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella]
Length = 155
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/153 (75%), Positives = 137/153 (89%)
Query: 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLD 383
FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLD
Sbjct: 3 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62
Query: 384 ADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHH 443
ADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHH
Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122
Query: 444 PWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
PW+AP +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVXLDEAKAR 155
>gi|341606541|gb|AEK83373.1| At4G08920-like protein [Capsella grandiflora]
Length = 155
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/153 (75%), Positives = 137/153 (89%)
Query: 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLD 383
FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLD
Sbjct: 3 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62
Query: 384 ADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHH 443
ADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHH
Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122
Query: 444 PWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
PW+AP +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKXR 155
>gi|405971549|gb|EKC36382.1| Cryptochrome-2 [Crassostrea gigas]
Length = 830
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 165/498 (33%), Positives = 252/498 (50%), Gaps = 38/498 (7%)
Query: 4 NRTIV-WFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEE---GQFYPGRVSRWWLKQS 58
NR +V WFRRDLR+ DNPAL AA+ + V V+ W EE G G ++ WL +
Sbjct: 150 NRPVVYWFRRDLRLYDNPALFEAASMNVPVILVFLWSESEEDPEGVVAAGGATKLWLHHA 209
Query: 59 LSYLGQSLKSLGAELVLF-KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEK 117
L++L +S+ +++ KT+S +L I A ++ N +Y+P RD I +
Sbjct: 210 LNHLDKSISDRYNNRIIYRKTQSCQREILSLIEETGAKALLINDVYEPFLKQRDDKICAE 269
Query: 118 LVELGISVQSYNGDLLYEPWEIYDE----RGHAFTTFDAYWDKCLQMQMEPAS--ILPPW 171
L GI + ++ LL+EP + E RG T + + C Q +P + P
Sbjct: 270 LQRKGIECKKFHSYLLHEPGSVSAESVGMRGVGSVTH--FMECCRQSDAQPIGHPLDYPP 327
Query: 172 RLVQAAGTIDGCSIEDLGLEDESEKSSNALLG------RGWSPGWSNADKVLTEFVEQHL 225
L + S+ DL L + +++ R W G A K L F+ + +
Sbjct: 328 TLPKPDQFPSSSSLHDLELAKMPRRKDGSIIDWAAPIVRQWDFGEEGAWKALELFLSEGV 387
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
+Y K + +T +SPYLHFG++S R V EE K FLR
Sbjct: 388 RKYEKESCRADHLNTCRISPYLHFGQISPRAVL------------EEARHMKSPK--FLR 433
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ R+ S +L +P +P + + W D G+ KAW++GRTG+PLVDA MR+LW
Sbjct: 434 KLAWRDLSYWLLTLWPDLPSQPTRVHYRDQAWSRDPGHLKAWQRGRTGFPLVDAAMRQLW 493
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
GWI+N +R +V+SF + L L W G ++F DTLLDAD+ + + WQ +G + +
Sbjct: 494 LEGWINNYLRHVVASFLISYLRLHWVEGYRWFQDTLLDADVAINAMMWQ--NGGMSGLDQ 551
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
+ P DP+G YVR+W PE+A +P ++IH PW PP++L+ G++LG YP
Sbjct: 552 WNFVMHPVDAALTCDPDGAYVRKWCPEIAALPNDFIHQPWKCPPSILRRCGIKLGETYPY 611
Query: 466 PII-DLDLGRER-LTQAI 481
+I DL+ RE+ LT +
Sbjct: 612 RVISDLEGAREQSLTDVV 629
>gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum
ferrodiazotrophum]
Length = 468
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 247/480 (51%), Gaps = 36/480 (7%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
R+IVWFR +LR+ DN L+ AA++G+V PVY P +P RV + W K+SL L +
Sbjct: 2 RSIVWFRHNLRLSDNRPLSLAAKEGAVLPVYVHDPTL--SLFPDRVRQRWRKRSLWELDR 59
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL+ LG L +F + S+ LL+ + ++A +V + ++ +L + G+S
Sbjct: 60 SLRKLGNRLHVF-SGSSCEILLKVATRVRAERVYAFRGLTGEDRALEERLENELRKAGVS 118
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ D LY P + R + F Y C Q S LP L + S
Sbjct: 119 LHLTGFDTLYPPDLAAEGRSSPWKIFTPYHRFCRQ------SFLPEHPLPAPSRVDSLPS 172
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ LG E+E + + G+ PG + A L EF+E L Y R TS LS
Sbjct: 173 LASLGGEEEVGGAGEVVSFVGFEPGEAGAMHCLREFLENSLAGYASRRDYPAEEGTSRLS 232
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L GE+SVR++ Q L +E + GK+ F L +G RE+S +L F P
Sbjct: 233 PHLASGEISVREIVQRL--------QESDAPGKDREKF-LEELGWREFSAHLLFFHPEML 283
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGM-RELWATGWIHNRIRVIVSSFAV 363
PL W +D F AW++GRTG+PLVDAGM REL TGW+HNR+R++ +SF V
Sbjct: 284 VDPLKKEWATMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAETGWMHNRVRMVAASFLV 343
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L + W+ G ++F + LLD D + WQ+++G D R+ +P +QG ++DP G
Sbjct: 344 KNLGVSWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYFRIFNPVLQGQRYDPHG 403
Query: 424 EYVRQWLPELARMPTEWIHHP--------WDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+YVR++LPEL+ +P E IH P W+ P + YP+PI+DL RE
Sbjct: 404 KYVRRFLPELSALPDEKIHLPRKQSSSADWERPAS---------SQGYPEPIVDLSESRE 454
>gi|341606543|gb|AEK83374.1| At4G08920-like protein [Capsella grandiflora]
gi|397136838|gb|AFO11927.1| CRY1, partial [Capsella bursa-pastoris]
Length = 155
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/153 (75%), Positives = 136/153 (88%)
Query: 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLD 383
FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLD
Sbjct: 3 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62
Query: 384 ADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHH 443
ADLE D LGWQYI+G+LPD E +R+D+P +G KFDP GEYVR+WLPEL+R+PT+WIHH
Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122
Query: 444 PWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
PW+AP +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 155
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/153 (75%), Positives = 136/153 (88%)
Query: 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLD 383
FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLD
Sbjct: 3 FKGWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62
Query: 384 ADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHH 443
ADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHH
Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122
Query: 444 PWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
PW+AP +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 155
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/153 (75%), Positives = 136/153 (88%)
Query: 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLD 383
FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLD
Sbjct: 3 FKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62
Query: 384 ADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHH 443
ADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHH
Sbjct: 63 ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122
Query: 444 PWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
PW+AP +VL+AAG+ELG NYP+PI+ LD + R
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 161
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/161 (72%), Positives = 137/161 (85%)
Query: 268 WAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAW 327
WA E N G+ESV FL+++GLREYSRY+ FN P++HERPLL +LK+FPW D FKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQ 428
D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEYVR+
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRR 161
>gi|410479530|ref|YP_006767167.1| deoxyribodipyrimidine photolyase [Leptospirillum ferriphilum ML-04]
gi|406774782|gb|AFS54207.1| deoxyribodipyrimidine photolyase [Leptospirillum ferriphilum ML-04]
Length = 576
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 239/481 (49%), Gaps = 26/481 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFR +LR+ DNP L AA G + PV+ + G+ P +WW +SL L S
Sbjct: 104 SIVWFRNNLRLLDNPPLREAAERGPLLPVF--VGEHPGKQPPEGARQWWQARSLKRLDHS 161
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L GA L+ + + L + + +KA K++ DP ++ L + +
Sbjct: 162 LSRRGAPLLFLRGDPA-TLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSGKPVEL 220
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ L P ++ ER + F +W + P + A +DG
Sbjct: 221 HLFPAGYLISPADLPAERRSPWKVFTPFWQRAQSHLPPPLP-------LPAPDRLDGIPF 273
Query: 186 ------EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+D G E E+ + + G W PG A + L F+E+ L Y R L ++
Sbjct: 274 PRTETPDDWGWEPENPDWATEMRG-FWDPGEEGAWRRLHAFLEKRLENYRVRRDFLEEDT 332
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
+SLLSP+L GE+S+R V+ WA +E+ + FL +G RE+S +L ++
Sbjct: 333 SSLLSPHLANGEISIRSVW---------WAIKESTAPDKDREKFLSELGWREFSAHLMWH 383
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P L W D + AW++GRTG PLVDAGMR+L G++ NR+R++ +
Sbjct: 384 HPDLASERLHKERPEIRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAA 443
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G ++F D L+D D + WQ+ISG D R+ +P +QG KF
Sbjct: 444 SFLVKNLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKF 503
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DPEG YV+ +LPEL + +IH PW AP +L +AG+ Y PI+DL L R+R Q
Sbjct: 504 DPEGRYVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQ 563
Query: 480 A 480
A
Sbjct: 564 A 564
>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
Length = 469
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 228/431 (52%), Gaps = 21/431 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+VWFR+D R +DNPAL A + S+ PVY PG+ +R W+ +SL L
Sbjct: 8 VVWFRKDFRTDDNPALFEATKIRSIIPVYIIDENNCSIRKPGKAARIWIAESLIDLN--- 64
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE--LGIS 124
KSL L ++ + +T+ L +S KA + +N YDP D I+ ++++ I
Sbjct: 65 KSLDHHLKIY-SGNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQIRTEILKDHPNII 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP---PWRLVQAAGTID 181
++++N LL+EP E+ + G + F A+ +K ++ ++EP +P R + +
Sbjct: 124 IRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPPKIRYCKEINIPE 183
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
S+ + + + + + W +A +L EFV++ L Y+ +R G N TS
Sbjct: 184 LASVTPEKIIKDKDHCFEQGIYKQWKISEQDAHVLLQEFVDKKLDNYHIDRDYPGKNGTS 243
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSPY++FG++S ++ W + + + FL + RE++ + P
Sbjct: 244 TLSPYINFGQISPNRI----WFALVRFLPQS--------IQFLTELLWREFAYNILNTNP 291
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ L YFPW D FK W +G TGYP+VDAG+REL +TG++HNR+R+IV SF
Sbjct: 292 ELGSQNLQQKFDYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGYMHNRVRMIVGSF 351
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K LL+ W++G ++FW+ L+DAD + WQ+I+GS D R+ SP Q KFDP
Sbjct: 352 LTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRIFSPTTQTKKFDP 411
Query: 422 EGEYVRQWLPE 432
+ +Y +WLPE
Sbjct: 412 QLQYSDKWLPE 422
>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
Length = 472
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 240/476 (50%), Gaps = 19/476 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++WFRRDLR+ D+PAL AA G V PV+ G G +W L + L+ +
Sbjct: 8 TLLWFRRDLRLSDHPALTQAAARGPVIPVFIHDDSVAGL---GAAPKWRLGEGLAVFRDA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L GA L+L + + L I AT V + YDP ++ RD +K L + G
Sbjct: 65 LAERGARLILRRGPAR-EVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALADRGTEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
S+ G L++EPWE+ ++G + + YW +++ P L + D ++
Sbjct: 124 CSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLRAPD--LSAPSKWPDSEAL 181
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
ED L + + A++ R +PG A L F Q L Y + R ++TS +S
Sbjct: 182 EDWHLGAGMNRGA-AIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAEDATSDMSQ 240
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
YL GE+S R+++ A EGK F + + RE++ +L ++ P +
Sbjct: 241 YLTLGEISPRQLWHA--------ALRGEAEGKSGAEHFRKEVVWREFAYHLMYHTPRLLD 292
Query: 306 RPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
+ F W D + W+QGRTG VDA MRE++ TG +HNR R++V+S+ K
Sbjct: 293 ENWREGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVVASYLTK 352
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
+L+ WR G K+F D L+D D + +GWQ+++G PD R+ +P+ Q KFD +G
Sbjct: 353 HMLVHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEKFDRDGR 412
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
YV +WL E +R P++ +DA P ++ G+ +YP+P++DL GR R A
Sbjct: 413 YVARWLAECSRSPSDTALSYFDAIP---ESWGLSPEDDYPEPVVDLKEGRRRALAA 465
>gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'5-way CG']
Length = 534
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 239/481 (49%), Gaps = 26/481 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFR +LR+ DNP L AA G + PV+ + G+ P +WW +SL L S
Sbjct: 62 SIVWFRNNLRLLDNPPLREAAERGPLLPVF--VGEHPGKQPPEGARQWWQARSLRRLDHS 119
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L GA L+ + + L + + +KA K++ DP ++ L + +
Sbjct: 120 LSRRGAPLLFLRGDPA-TLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSGKPVEL 178
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ D L P ++ R + F +W + P + A +DG
Sbjct: 179 HLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLP-------LPAPDRLDGIPF 231
Query: 186 ------EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+D G E E+ + + G W PG A + L F+E+ L Y R L ++
Sbjct: 232 PRTETPDDWGWEPENPDWATEMRG-FWDPGEEGAWRRLHAFLEKRLENYRVRRDFLEEDT 290
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
+SLLSP+L GE+S+R V+ WA +E+ + FL +G RE+S +L ++
Sbjct: 291 SSLLSPHLANGEISIRSVW---------WAIKESTAPDKDREKFLSELGWREFSAHLMWH 341
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P L W D + AW++GRTG PLVDAGMR+L G++ NR+R++ +
Sbjct: 342 HPDLASERLHKERPEIRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAA 401
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G ++F D L+D D + WQ+ISG D R+ +P +QG KF
Sbjct: 402 SFLVKNLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKF 461
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DPEG YV+ +LPEL + +IH PW AP +L +AG+ Y PI+DL L R+R Q
Sbjct: 462 DPEGRYVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQ 521
Query: 480 A 480
A
Sbjct: 522 A 522
>gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
Length = 456
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 240/480 (50%), Gaps = 41/480 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++VWFR DLR+ DNPAL AA R+ + +Y + +G G +RWWL SL+ LG+
Sbjct: 5 SVVWFRDDLRLTDNPALRAALDREEPIVALYLLDEESDGVRSIGGAARWWLHGSLASLGE 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ G LVL + + + + A V +N Y V D IKEKL G++
Sbjct: 65 RLEERGGRLVLRRGRAAEVVP-AVVEEVGAGAVFWNRRYGGVEREIDAGIKEKLRGDGVT 123
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA-AGTIDGC 183
V S+ +LLYEPW + + + + + + +Q P +P R V G +DG
Sbjct: 124 VASFAANLLYEPWTVRTQADKPYGVYSPF-ARAVQKLPAPRPPMPEARKVPGFDGHVDG- 181
Query: 184 SIEDLGLED--ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+DL D ++ L W PG L EF++ L Y K R + G +TS
Sbjct: 182 --DDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEFAGGATS 239
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP L +GELS +V W + I A + E +S + FL + RE++ ++ ++ P
Sbjct: 240 NLSPRLRWGELSPYEV----WHETI--AHRGSGEHAQSASGFLSELVWREFAWHVTYHSP 293
Query: 302 FTHERPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
N FPW + + + W+QG+TG +VDAGMR+LW TG +HNR+R++ +S
Sbjct: 294 DIATVNWRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGVMHNRVRMVTAS 353
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWD L+DAD + WQ+++GS D R+ +P+ Q KFD
Sbjct: 354 FLIKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRVFNPDTQRKKFD 413
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P YVR+W PE LG N P+P++DL R+R A
Sbjct: 414 PHDAYVREWAPEY-------------------------LGENPPEPMVDLGETRKRALDA 448
>gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis]
Length = 755
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 169/506 (33%), Positives = 248/506 (49%), Gaps = 49/506 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEG-----QFYPGRVSRWWLKQSL 59
++WFRRDLR+ DNPAL AA G+ V P++ W P+EE G ++WL Q+L
Sbjct: 105 VLLWFRRDLRLCDNPALTAALEVGAPVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQAL 164
Query: 60 SYLGQSLKSLGAELVLFKTE-------STLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
S L SL+ G+ LV ++ S+L L E + A V+ N LY+P RDH
Sbjct: 165 SCLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDH 224
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDER-GHAFTTFDAYWDKCLQMQMEPA---SIL 168
+ L + G+ + ++ L +P+ + E G +++ C + PA +
Sbjct: 225 AAAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLE 284
Query: 169 PPWRLVQAAGTIDGCSIEDLGL------EDESEKSSNALLGRGWSPGWSNADKVLTEFVE 222
PP L A G +E LGL +D + A + + W A L F+
Sbjct: 285 PPTALPVPAHWPRGAPLEALGLARMPRRKDGTTVDWAASIRKSWDFSEEGAHARLEAFLG 344
Query: 223 QHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF 282
+ RY K + +TS +SPYLHFG+LS R V LW + + F+
Sbjct: 345 DGVYRYDKESGRADAPNTSCVSPYLHFGQLSPRWV---LWDAKAARCRPPKFQ------- 394
Query: 283 FLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMR 342
R + R+ + + FP L K W +D + KAW++G TGYPLVDA MR
Sbjct: 395 --RKLAWRDLAYWQLSLFPELPWESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDAAMR 452
Query: 343 ELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYF-----------WDTLLDADLECDIL 391
+LW TGW++N +R +V+SF + L LPW+ G ++F DTL+DAD+ D +
Sbjct: 453 QLWLTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAIDAM 512
Query: 392 GWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNV 451
WQ +G + + P DP+G YVR+W PEL+ +P E IH PW P +V
Sbjct: 513 MWQ--NGGMCGLDHWNFVMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKPWKCPASV 570
Query: 452 LKAAGVELGLNYPKPII-DLDLGRER 476
L+ AGV LG YP+ I+ DL+ R R
Sbjct: 571 LRRAGVVLGQTYPERIVTDLEERRSR 596
>gi|403525553|ref|YP_006660440.1| deoxyribodipyrimidine photolyase [Arthrobacter sp. Rue61a]
gi|403227980|gb|AFR27402.1| putative deoxyribodipyrimidine photolyase [Arthrobacter sp. Rue61a]
Length = 465
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 153/447 (34%), Positives = 222/447 (49%), Gaps = 32/447 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFR DLR+ DNPAL AA DG+ +Y + G G +RWWL SL+ L
Sbjct: 4 SIVWFRDDLRVADNPALRAAVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLTALRGD 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LG L+L + +T L E +AI A + +N Y D IK E G+ V
Sbjct: 64 LDKLGVPLLLRRGPAT-DVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAWAGEAGLHV 122
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC-LQMQMEPASILPPWRLVQAAGTIDGCS 184
S+ LL+EPWE+ + G + F +W Q EP ++ P G + C
Sbjct: 123 SSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPLAV--PEAGHGFTGKLPVCD 180
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ ++ + L W+PG + K L FV L Y + R + + +S LS
Sbjct: 181 QLESWQLLPTKPDWSGGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTDGSSCLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
PYL +GELS +V+ L K+ ES + + +G RE+ + F+ P
Sbjct: 241 PYLRWGELSPFEVWHALGSKR-----------SESASIYASELGWREFCWHQYFHNPQLA 289
Query: 305 ERPLLSNLKYFPW-----------------HADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
L FPW + F+AW+QGRTG+P+VDAG R+LW T
Sbjct: 290 TANLRPEFDRFPWAWPGNNGNGGGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQLWHT 349
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R++ +SF VK L + W+ G ++FWDTL+DAD + WQ+++GS D
Sbjct: 350 GWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADASPFF 409
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELA 434
R+ +PE Q KFDP+G+Y+ W+PE
Sbjct: 410 RIFNPEAQRVKFDPQGKYIAHWIPEFG 436
>gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
Length = 463
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 157/461 (34%), Positives = 230/461 (49%), Gaps = 48/461 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA------------ARDGS------VFPVYTWCPKEEGQFYP 47
++VWFR DLR D+PAL AA + DG+ V ++ + +G
Sbjct: 3 SLVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRPL 62
Query: 48 GRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVS 107
G +WWL SL L L++LG LVL + + +L+ + V +N Y
Sbjct: 63 GGAVKWWLHHSLVALRAKLEALGIPLVL-RRGAAHDVVLDVVETFDVDFVGWNRRYGGPE 121
Query: 108 LVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM----- 162
V D IK E + V SY +LL+EPW I G + F +W CL
Sbjct: 122 RVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACLSEPQPREPL 181
Query: 163 -EPASILPPWRLVQAAGTIDGCSIEDLG----LEDESEKSSNALLGRGWSPGWSNADKVL 217
P+++ PP LV+ AG + +DL L + + S+ + + W+PG A ++L
Sbjct: 182 DAPSALTPPSALVEQAGQ----ASDDLDTWALLPTKPDWSTG--IAKAWTPGEDAAHELL 235
Query: 218 TEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK 277
+F++ ++ Y R + +TS LSP+L FGE+S Q +W GK
Sbjct: 236 ADFLDDAVVHYATQRDEPSKPATSRLSPHLRFGEIS----------PQTIWHAARR-SGK 284
Query: 278 ESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPL 336
+ V FL +G RE++ + ++ P HE L FPW D AW +G TG PL
Sbjct: 285 D-VETFLSEVGWREFAWHTLYDNPDLHEVNLNRKFDAFPWPPLDEDALLAWEKGETGVPL 343
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI 396
VDAGMRELW TG +HNR+R++V+SF K LL+ WR G ++FWDTL+DAD + WQ++
Sbjct: 344 VDAGMRELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNPFNWQWV 403
Query: 397 SGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437
+G D R+ +PE Q KFDP+ YVR+W + R P
Sbjct: 404 AGCGADAAPYFRVFNPETQRKKFDPDERYVRRWGADDGREP 444
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 156/484 (32%), Positives = 257/484 (53%), Gaps = 39/484 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA + S + ++ P + P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNMGLAAARKQSSKIVGLFCLDPNILNSNEVAPARVT--YMLGCLQELK 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+S +G++L++ + E + A+ + A++ T V ++ +P + RD ++++L++ GI
Sbjct: 64 ESYSKIGSQLLIVRGEP-IEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+V +Y LL+ P +I + G +T + +W Q P + + I G
Sbjct: 123 AVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQK--------PKLEVAEKLDRIQGL 174
Query: 184 SIEDLGLEDESEKSS---NALLGRGW------SPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ E++ + E+ S LG W +PG + A + L EF E+ + +Y + R
Sbjct: 175 TAEEIKIAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNF 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFLRAMGLREY 292
TSLLSP L FG + +R V+Q L A + ++ E + ++ + + + RE+
Sbjct: 235 PAVEGTSLLSPALRFGVIGIRTVWQA-----TLEATKNSYSEEVRANIETWQKELAWREF 289
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
++ ++FP P K FPW + +F+AW +G+TGYP+VDA MR+L TGW+HN
Sbjct: 290 YQHALYHFPQLTVEPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHN 349
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R R+IV+SF K L++ W+WG +YF L D DL + GWQ+ + D L R+ +P
Sbjct: 350 RCRMIVASFLTKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKPL-RIFNP 408
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
Q KFDPEGEY+RQWLPEL+ + TE++ P + + +YP+PI+D +L
Sbjct: 409 ASQAKKFDPEGEYIRQWLPELSSIDTEYLVRG-KIPDDERERC------DYPQPIVDHNL 461
Query: 473 GRER 476
R+R
Sbjct: 462 -RQR 464
>gi|444370664|ref|ZP_21170306.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia K56-2Valvano]
gi|443596999|gb|ELT65453.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia K56-2Valvano]
Length = 435
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 218/421 (51%), Gaps = 9/421 (2%)
Query: 53 WWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
WWL SL+ L +L G L+L + ++ + + A V +N Y D
Sbjct: 1 WWLHGSLAGLDAALARHGGRLLLLRGDAQRE-IERLVRDTGAAAVYWNRRYAQPQRDADA 59
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR 172
++K L G++V+S NG LL EPWE+ G + F AYW + + A + P +
Sbjct: 60 ALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRAVAAPLPAPGQ 119
Query: 173 LV----QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRY 228
+V A +++ L L + + L +P + A L F+ L Y
Sbjct: 120 IVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGY 179
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG 288
R + +TS LSP+L FG +S R+V W A FL +G
Sbjct: 180 ADARDRPDRPATSRLSPFLRFGNVSPRQV----WHAVQGAASAGGAAYAADADKFLSELG 235
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
RE+S L ++FP + PW D +AW++GRTGYPLVDAG+RELW TG
Sbjct: 236 WREFSYTLLYHFPTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTG 295
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
W+HNR+R++V+SF +K LL+ WR G +F DTL+DAD + WQ+++G D R
Sbjct: 296 WMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFR 355
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
+ +P QG KFDP+G YVR+W+PELA + IH PW+A P L+AAG+ LG++YP P++
Sbjct: 356 IFNPVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPLV 415
Query: 469 D 469
+
Sbjct: 416 E 416
>gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
Length = 471
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 238/477 (49%), Gaps = 22/477 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFRRDLR+ DNP LA AA G + P++ P+ E G +W L + ++
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ LG+ LVL + LA L ++ A V ++ L++P RD +K L + GI
Sbjct: 65 LEGLGSRLVL-RRGPALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA--GTIDGC 183
S+ G ++EPWE+ +G + + +W K ++ + AS PP RL A +
Sbjct: 124 ASHAGHTIFEPWEVETGQGGFYRVYTPFW-KAVKDRPVAASFPPPARLPSPAEWPVSERL 182
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ DLG + A++ + G + A + LT F+ L RY R + TS L
Sbjct: 183 ASWDLG---RAMNRGAAVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPDAPVTSRL 239
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
S L +GE+S R ++ EG+ FL+ + RE+ +L ++ P
Sbjct: 240 SENLTYGEISARSLWHA--------GMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEI 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R + FPW D + + WR+G TG P VDA MREL+ TG +HNR R+I S+
Sbjct: 292 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL WR G +F D L+D D + LGWQ+++GS PD R+ +P Q KFDPE
Sbjct: 352 KHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y +++L E+AR P +A P ++ G+ YP+P++ L GRER A
Sbjct: 412 AYRQRFLAEIARRPGPEALAFLEAVP---RSWGLRPDRCYPRPVVGLAEGRERALAA 465
>gi|395493322|ref|ZP_10424901.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26617]
Length = 456
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 231/481 (48%), Gaps = 39/481 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
I+W RRDLR+ D PAL AA DG V PVY ++ G SRWWL SL L L
Sbjct: 5 ILWLRRDLRLADQPALLAAINDGPVIPVYILDDDTPEKYAMGGASRWWLHHSLEGLDSDL 64
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ G+ L+L + + + L + AT+V ++P + ++ + L +
Sbjct: 65 REKGSRLILRRGK-CVEVLAQLAEETGATQVHCIRHFEPWWRKAEEAVAKHL-----DLV 118
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
++G+ L P I G + + +W Q PA I P ++ + +
Sbjct: 119 CHDGNYLARPGSITTGSGGQYKIYTPFWRALKQHMPPPAPIHKPAKIPAPSKWPKSDVLA 178
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
D L S W+PG A L F +Q Y R +S LSP+
Sbjct: 179 DWTLLPTKPDWSTGF-SDDWTPGEDAAHNRLNAFKKQ-ADDYDDTRNFPSQEGSSRLSPH 236
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHER 306
LHFGELS +V W + G SV FL +G R+Y++ + +P +
Sbjct: 237 LHFGELSAAQV----------WHAVADVGG--SVDVFLSEIGWRDYAQNVILQYPEYGSK 284
Query: 307 PLLSNLKYFPW------HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PW HADL KAW+QGRTGYP+VDAGMR+LW TGW+HNR+R+I +S
Sbjct: 285 NAREKYDAMPWRSGKDAHADL---KAWQQGRTGYPIVDAGMRQLWKTGWMHNRVRMITAS 341
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWD L+D D + + WQ+ +G+ D + R+ +P +Q KFD
Sbjct: 342 FLIKHLLIDWREGERWFWDCLVDGDYGSNSVNWQWTAGTGIDSNMFVRIMAPLVQSPKFD 401
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G Y+R+W+PELA + + IH P + AG YP II RER QA
Sbjct: 402 -AGAYIREWVPELADVKGDAIHDP--------EEAGCRPKA-YPPKIIGHREARERALQA 451
Query: 481 I 481
+
Sbjct: 452 V 452
>gi|385653609|ref|ZP_10048162.1| deoxyribodipyrimidine photo-lyase [Leucobacter chromiiresistens JG
31]
Length = 465
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 151/439 (34%), Positives = 219/439 (49%), Gaps = 27/439 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSYLG 63
++WFR DLR+ D+ AL+A ARD G V +Y +E + P G ++WWL +SL+ LG
Sbjct: 19 ALIWFRDDLRLADHAALSAGARDEGGVVALYV-LDEESDETRPLGGAAKWWLHESLTRLG 77
Query: 64 QSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
++L G LVL + ES + A+ + + A V +N Y + D IKE+L
Sbjct: 78 EALHERGVPLVLRRGAAESVVPAV---AAEVGADHVYWNRRYGAERHI-DARIKERLHGD 133
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQ--MEPASILPPWRLVQAAGT 179
G+ S+ G LL+EPW + + G + + +W CL M EP I P R + +
Sbjct: 134 GVDAHSFPGGLLFEPWTVETQSGGHYRVYSPFWRACLAMPGPAEPLPIPEPLRGAEPSAA 193
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
D +++D L+ + + + R W PG A L F+ Y R
Sbjct: 194 SD--ALDDWRLQSKHPDWATGIAER-WQPGEDQALARLERFLSSRAGAYAGRRDFPSEEV 250
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
S LSPYL +GE+S R V+ FL +G RE++ + F+
Sbjct: 251 CSELSPYLRWGEISPRTVWH------------RALASGADAGAFLSELGWREFAWHTTFH 298
Query: 300 FPFTHERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
H R L +FPW D +AW++G TGY LVDAGMRELW TG++HNR+R++
Sbjct: 299 NSPLHLRELNPQFAHFPWKDPDEQQLRAWQRGETGYGLVDAGMRELWQTGYMHNRVRMVT 358
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K LL WR G +FWDTL+DAD + WQ+++G D R+ +P Q K
Sbjct: 359 ASFLTKNLLTDWRIGEAWFWDTLVDADTASNPFNWQWVAGCGADAAPYFRIFNPVTQQKK 418
Query: 419 FDPEGEYVRQWLPELARMP 437
FDP+G YV W + P
Sbjct: 419 FDPDGHYVSLWASDSVLFP 437
>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
Length = 474
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 161/488 (32%), Positives = 251/488 (51%), Gaps = 34/488 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLRI DN LAAA + V+ P E P RV+ ++ L
Sbjct: 3 NLILFWHRRDLRISDNVGLAAAFELSPKLVGVFCLDPTILERDDIAPARVT--YMIGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L Q + G++L++ + + +A++A V +N +P S RD + L E
Sbjct: 61 QLQQGYRQAGSQLLILHQDPR-QGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQ---- 175
GI+V +Y LL+ P EI+ + G+ ++ + +W Q + EP + L +
Sbjct: 120 KGIAVYNYWDQLLHAPGEIFTKSGNPYSVYTPFWKNWQGQSKAEPVATLTRVESLTEIEQ 179
Query: 176 ----AAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
AAG D S DLG E+E LL PG A ++L EF ++ + Y++
Sbjct: 180 DNALAAGVTDLPSAIDLGYVWENE-----LLV---PPGEKVAQEILEEFCDRTIGDYHEQ 231
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R G + TS LS L FG + +R+V+Q Q + + E ++S+ + + + RE
Sbjct: 232 RNFPGVDGTSKLSAALKFGVIGIRRVWQA---AQNAYNLSRSDEARQSIQTWQQELAWRE 288
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ ++ + FP + P + FPW + F+AW +G+TGYP+VDA MR+L TGW+H
Sbjct: 289 FYQHAMYFFPELAQGPYRQKFQDFPWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTGWMH 348
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR R+IV+SF K L++ W+WG KYF L D DL + GWQ+ + S D L R+ +
Sbjct: 349 NRCRMIVASFLTKDLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKPL-RIFN 407
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q KFDP+GEY+R+WLPEL+ + TE++ + +G E+ YP PI+D +
Sbjct: 408 PASQAKKFDPDGEYIREWLPELSSVDTEYVVS------GKIPESGREM-CGYPAPIVDHN 460
Query: 472 LGRERLTQ 479
+ R +
Sbjct: 461 QQQRRFKE 468
>gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1]
gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens
TC1]
Length = 465
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 218/450 (48%), Gaps = 38/450 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+IVWFR DLR+ DNPAL AA DG+ +Y + G G +RWWL SL+ L
Sbjct: 4 SIVWFRDDLRVADNPALRAAVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLTALRGD 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LG L+L + +T L E +AI A + +N Y D IK E G+ V
Sbjct: 64 LDKLGVPLLLRRGPAT-DVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAWAGEAGLHV 122
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
S+ LL+EPWE+ + G + F +W +P +A G
Sbjct: 123 SSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPLAVP-----EAGHGFTGKLP 177
Query: 186 EDLGLED----ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
LE ++ + L W+PG + K L FV L Y + R + + +S
Sbjct: 178 VYDQLESWQLLPTKPDWSGGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTDGSS 237
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSPYL +GELS +V+ L K+ ES + + +G RE+ + F+ P
Sbjct: 238 CLSPYLRWGELSPFEVWHALGSKR-----------SESASIYASELGWREFCWHQYFHNP 286
Query: 302 FTHERPLLSNLKYFPW-----------------HADLGNFKAWRQGRTGYPLVDAGMREL 344
L FPW + F+AW+QGRTG+P+VDAG R+L
Sbjct: 287 QLATANLRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQL 346
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
W TGW+HNR+R++ +SF VK L + W+ G ++FWDTL+DAD + WQ+++GS D
Sbjct: 347 WHTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADAS 406
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELA 434
R+ +PE Q KFDP+G Y+ WLP+
Sbjct: 407 PFFRIFNPEAQRVKFDPQGRYIAHWLPDFG 436
>gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299]
gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299]
Length = 450
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 236/479 (49%), Gaps = 46/479 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR+DLR+ DNPAL AAAR G V + WCPKEEG + G +R+WL +L L S
Sbjct: 1 VVWFRQDLRVRDNPALHAAARTGRPVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQAS 60
Query: 66 LKSLGA-----ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL-V 119
L++ A + S+ L + A V N +Y+P + RD + K
Sbjct: 61 LRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFSA 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK---CLQMQMEPASILPPWRLVQA 176
EL + +S+N +LYEPW+ + T DA W+ ++ + + RL +
Sbjct: 121 ELNVRFRSFNAGVLYEPWDARPD-----ATDDACWNSGYGSVRFFLRGCA-----RLGEP 170
Query: 177 AGTIDGCSIEDLGLEDESEKSS-------NALLGRGWSPGWSNADKVLTEFVEQHLLRYY 229
+ + L + S + G G S G SNA K TE
Sbjct: 171 PPPLPPPPTMRVRLPADKRARSYTEHGGVQSNPGNGQSNGQSNAPKASTE---------- 220
Query: 230 KNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGL 289
R + +T+ +SPY+ GELSVR+V+ Q+ K S FLR +
Sbjct: 221 --RFRADVRTTARISPYVRHGELSVREVYHSAKAIQVGSRKSR----ARSAAVFLRRLAW 274
Query: 290 REYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
R+ + + + FP + PL W A + AW+ G+TGYPLVDAGMRELWATG+
Sbjct: 275 RDLAYWSLWRFPRLCDEPLRPQYAT-QWWALPWDPVAWQFGQTGYPLVDAGMRELWATGY 333
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+ N +R +V+ F ++ L + WR G +F DTL+DAD+ WQ +G + +
Sbjct: 334 VPNYVRHVVAGFLIEYLNVDWRHGQLWFHDTLVDADVAIQGFMWQ--NGGHSGMDQWNFV 391
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
P DP+GEYVR+W PEL+ +P E++H PW+AP L AA V LG +YPK I+
Sbjct: 392 MHPVYAAKSADPDGEYVRRWCPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450
>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
Length = 474
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 245/483 (50%), Gaps = 20/483 (4%)
Query: 1 MGGNRTIVWF-RRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQS 58
M R ++W+ RRDLR+ DNPAL AA G + P+Y P++E G ++ L
Sbjct: 1 MADTRPVIWWIRRDLRLRDNPALTAALETGGPIIPLYIHDPQDEAL---GAAPKFRLGLG 57
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L ++L+ G+ L L K ++ L L E I A VV++ LYDP ++ RD IKE+L
Sbjct: 58 LERFAKTLEGHGSRLTLRKGDA-LEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQL 116
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
I+V+S G L++EPW + + G + + +W ++E I P L +
Sbjct: 117 KAADITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVE-GLIDAPANLPKPDA 175
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ D + + + + G G A + L F+E+ + Y +R
Sbjct: 176 WPATDELADYNISAAMRRGAEIVAGYC-RVGDDAALEQLDRFLEERVQTYKADRDFPSRA 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS LS L +GE+S +++ + +GK+ FL+ + RE++ +L +
Sbjct: 235 ATSELSENLAWGEISPHRMWHL--------GAQAMRDGKQGAEHFLKEVVWREFAYHLMY 286
Query: 299 NFPFTHERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+ P R FPW D G W+QG+TGY VDA MREL+ TG +HNR R+I
Sbjct: 287 HSPHILTRNWREEWDGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMI 346
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+SF K L++ W++GM++F D L+D D + +GWQ+++GS PD R+ +P+ Q
Sbjct: 347 VASFLTKHLMIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLE 406
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFDP+G YVR WL E P + + A P + + + +PIIDL GRER
Sbjct: 407 KFDPKGRYVRNWLAEGQSDPPQTATDFFAATPLSWELSAKD---TRARPIIDLKRGRERA 463
Query: 478 TQA 480
+A
Sbjct: 464 LEA 466
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 161/485 (33%), Positives = 242/485 (49%), Gaps = 42/485 (8%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE----EGQFYPGRVSRWWLKQSL 59
N + W RRDLRI DN LAAA R S V +C P RV+ ++ L
Sbjct: 6 NLILFWHRRDLRISDNIGLAAA-RQQSPKVVGIFCLDRNILNRDDVAPARVT--YMIGCL 62
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L + G++L++ + + L + + +AI A V +N +P + RD S+ L
Sbjct: 63 QKLSSRYREAGSQLLIIQDDPILG-IPKLATAINAQAVFWNWDVEPYAKQRDRSVSNALQ 121
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAG 178
+ GI VQ++ +L+ P EI G +T + +W K + + +P LP +
Sbjct: 122 QAGIQVQNFWDQVLHAPDEIRSGTGTPYTVYTPFWKKWNSKPKAQPVETLP----ITYLE 177
Query: 179 TIDGCSIEDLGLEDES---EKSSNAL-LGRGWS------PGWSNADKVLTEFVEQHLLRY 228
+ G + E+ + +++ E AL LG W PG A + L EF ++ + Y
Sbjct: 178 LMTGLTAEEQAIANQAGAMETVPTALSLGFIWENPLVIEPGEDAAQQKLEEFCDRAIYEY 237
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG 288
R N TS LS L FG + +R V+Q QI+ + E S+ + + +
Sbjct: 238 QGQRNFPAINGTSQLSAALKFGAIGIRTVWQA---TQIVMDTCRSEEACTSIRTWQQEIA 294
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
RE+ ++ +NFP + P K FPW D F+AW +G+TGYP++DA MR+L TG
Sbjct: 295 WREFYQHAMYNFPELADGPYRQAFKDFPWENDEKLFQAWCRGKTGYPIIDAAMRQLNQTG 354
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
W+HNR R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D L R
Sbjct: 355 WMHNRCRMIVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL-R 413
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGV----ELGLNYP 464
+ +P Q KFDPEGEY+R W+PEL R+ T+ VL + L+YP
Sbjct: 414 IFNPGSQAQKFDPEGEYIRHWVPELRRVDTK-----------VLLTGNISSLERRLLHYP 462
Query: 465 KPIID 469
PI+D
Sbjct: 463 SPIVD 467
>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
Length = 474
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/483 (32%), Positives = 247/483 (51%), Gaps = 20/483 (4%)
Query: 1 MGGNRTIVWF-RRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQS 58
M R ++W+ RRDLR+ DNPAL AA G + P+Y +EE G ++ L
Sbjct: 1 MADTRPVIWWIRRDLRLRDNPALRAAQEAGGPIIPLYIHDAQEEAL---GAAPKFRLGLG 57
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L ++L+ G+ L++ + ++ L L E I+ A V+++ LYDP + RD IKE L
Sbjct: 58 LERFAKTLEEKGSRLIVRRGDA-LEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEAL 116
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
I +S G LL+EPW + + G + + +W K ++ + P RL
Sbjct: 117 KASDIKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFW-KAVRTRDVAELTAAPSRLAAPES 175
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
G ++ DLG+ D + + A++ + G A L +F+ + + Y +R
Sbjct: 176 WPSGEALADLGM-DAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPARA 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
+TS LS L +GE+S +++ + +G+ FL+ + RE++ +L
Sbjct: 235 ATSELSENLAWGEISPHRMWHL--------GAQAMQDGQPGAEHFLKEVVWREFAYHLMH 286
Query: 299 NFPFTHERPLLSNLKYFPWHADLGN-FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
P R FPW D G+ + W+QG+TGY VDA MREL+ TG +HNR R+I
Sbjct: 287 RSPRILTRNWREEWDGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMI 346
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+SF K L++ W++G+++F D L+D D + +GWQ+++GS PD R+ +P+ Q
Sbjct: 347 VASFLTKHLMIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLE 406
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFDP+G+Y R+WLPE P E ++A P + + + PII L GRER
Sbjct: 407 KFDPKGDYARRWLPEGQANPPETAMAYFEAIP---RRWSLHPDQSRVSPIIGLKEGRERA 463
Query: 478 TQA 480
A
Sbjct: 464 LSA 466
>gi|384261840|ref|YP_005417026.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum
photometricum DSM 122]
gi|378402940|emb|CCG08056.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum
photometricum DSM 122]
Length = 369
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 193/351 (54%), Gaps = 16/351 (4%)
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
++ QS+ G LL++P + G + F +W+ ++ ++P P V A T+
Sbjct: 1 MAFQSHAGLLLHDPERLTTRSGTPYGVFTPFWNTLVKT-VDPGRPEPAPTRVPAPPTLPA 59
Query: 183 CS-IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+ED L + + L W+PG ++A + L F+ L Y R + +TS
Sbjct: 60 SERLEDWALRPSAPDWAAGLRA-AWTPGEASAQERLDAFLAAGLEGYADLRDRPDRPATS 118
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
L+P L +GE+S R+++ M+ G+E FLR +G RE+ + FP
Sbjct: 119 KLAPSLAWGEISPRQIWSACQMR-------PPSPGREG---FLRQLGWREFCYHGLHRFP 168
Query: 302 FTHERPLLSNLKYFPWHA---DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
ERPL + FPW WR+G TGYPLVDAGMR LWATGW+HNR+R++V
Sbjct: 169 DMAERPLKAPFARFPWAGPEESQAALARWRRGLTGYPLVDAGMRALWATGWMHNRVRMVV 228
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G+ +F DTL+DAD + GWQ+++G D R+ +P Q +
Sbjct: 229 ASFLVKHLLVDWRAGLAWFHDTLVDADPANNPAGWQWVAGCGSDAAPYFRIFNPVTQAER 288
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
FDPEG YVR+W+PELAR+P IH PW A L AAGV LG NYP+P +D
Sbjct: 289 FDPEGAYVRRWVPELARLPAPVIHRPWTASALDLAAAGVRLGQNYPRPQVD 339
>gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
Length = 471
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 239/477 (50%), Gaps = 22/477 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFRRDLR+ DNP LA AA G + P++ P+ E G +W L + ++
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ LG+ LVL + LA L ++ A V ++ L++P RD +K L + GI
Sbjct: 65 LEGLGSRLVL-RRGPALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQAGIEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA--GTIDGC 183
S+ G ++EP E+ +G + + +W K ++ + AS PP RL+ A +
Sbjct: 124 ASHAGHTIFEPREVETGQGGFYRVYTPFW-KAVKDRPVAASSPPPARLLSPAEWPVSERL 182
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ DLG + A++ + G + A + LT F+ L RY R + TS L
Sbjct: 183 ACWDLG---RAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRL 239
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
S L +GE+S R ++ EG+ FL+ + RE+ +L ++ P
Sbjct: 240 SENLTYGEISARSLWHA--------GMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEI 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R + FPW D + + WR+G TG P VDA MREL+ TG +HNR R+I S+
Sbjct: 292 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL WR G +F D L+D D + LGWQ+++GS PD R+ +P Q KFDPE
Sbjct: 352 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y +++L E+AR P ++A P ++ G+ YP+P++ L GRER A
Sbjct: 412 AYRQRFLAEIARRPGPEALAFFEAVP---RSWGLRPDRCYPRPVVGLAEGRERALAA 465
>gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
Length = 472
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 237/482 (49%), Gaps = 29/482 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+VWFRRDLR+ D+ AL AA G V PV+ +G G +W L L ++
Sbjct: 7 TLVWFRRDLRLSDHAALTEAASGGPVIPVFIRDALVDGL---GTAPQWRLGLGLKSFAEA 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ G+ L+L ++ + L E ++ A V ++ YDP S+ RD +KE L GI
Sbjct: 64 LEAKGSRLIL-RSGPAVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVKETLKGDGIDA 122
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
QS+ G LL+EPW + +G + + +W K ++ PA++ P L A DG ++
Sbjct: 123 QSFTGHLLFEPWTVETGQGGFYKVYTPFW-KAVRGCDVPAALSSPSDLQAPATWPDGETL 181
Query: 186 EDLGLEDESEKSSNAL-----LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D L + ++ + LG A L F+ + Y R ++ + T
Sbjct: 182 ADWELGKGMRRGADVVRPYVQLGE------QAAQTRLGVFMRDKVADYATTRDEVSKDGT 235
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS L GE+S + + +GK FL+ + RE++ +L ++
Sbjct: 236 SCLSENLSLGEISPAQCWHA--------GCRAIEDGKPGAETFLKELVWREFAYHLMWHT 287
Query: 301 PFTHERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
P + FPW D L KAW+QGRTG P VDA MREL+ TG +HNR R+IV
Sbjct: 288 PRLLDGNWRQEWDGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRARMIV 347
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+S+ K L+ W+ GM +F D L+D D + LGWQ+ +GS PD R+ +P Q K
Sbjct: 348 ASYLTKHLMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVTQREK 407
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP+ YV +W+ E + P++ +DA P A G YP PI+D GRE
Sbjct: 408 FDPDCAYVTRWIAEGRKSPSDTALSYFDAIPESWPMAP---GDAYPDPIVDPKEGREAAL 464
Query: 479 QA 480
A
Sbjct: 465 DA 466
>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
Length = 455
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 235/481 (48%), Gaps = 44/481 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFR+DLR+ D PAL AAA G V PVY + G + G RWWL SL L + L
Sbjct: 6 IVWFRQDLRLHDQPALLAAAEAGPVLPVYILDDETPGDWKMGGAQRWWLHHSLEALAKDL 65
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFN-HLYDPVSLVRDHSIKEKLVELGISV 125
K+LG+ L+L + + +L+ +S + + Y+P ++ ELG +
Sbjct: 66 KALGSRLILRRGRAV--EVLQALSKEAGAEAIHAIRHYEPW-------WRKAEDELGDRL 116
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG---TIDG 182
Y+G+ L P + G F + A+W K LQ M P L + A D
Sbjct: 117 CLYDGNHLARPELVTTGSGKPFRIYSAFW-KGLQGHMPPEHPLEAPDALTAPDRWPASDK 175
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
+ DL L + + S+ W+PG + A + + +FV + Y R +S
Sbjct: 176 LADWDL-LPTKPDWSTG--FDADWTPGEATARERMADFVAK-AAAYDTARNMPSEEGSSR 231
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSP+LHFGE+S R V+ L + K F + + R+++ + P
Sbjct: 232 LSPHLHFGEVSPRAVWHAL-------------DRKAETETFRKELAWRDFTDGVVMAIPD 278
Query: 303 THERPLLSNLKYFPWHADL---GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+R PW + KAWR G TGYP+VDAGMR+LW TGW+HNR+R+I +
Sbjct: 279 YADRNGREAFDKMPWRKGAEAEADLKAWRTGHTGYPIVDAGMRQLWTTGWMHNRVRMITA 338
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF +K LL+ WR G ++FWD L+DAD + + WQ+++G+ D + R+ +P Q KF
Sbjct: 339 SFLIKHLLIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAPLSQSEKF 398
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D G+Y+R+W+PEL + IH P AG +YP II GRER
Sbjct: 399 D-AGDYIREWVPELKDLSDAAIHDP--------DEAGCRPK-DYPAKIIGHREGRERALA 448
Query: 480 A 480
A
Sbjct: 449 A 449
>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
Length = 478
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 238/478 (49%), Gaps = 20/478 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I W RRDLR+ DN AL AA G+ V PV+ + ++E G R+ L L +L Q
Sbjct: 11 VIWWIRRDLRLSDNAALTAAVDSGAPVLPVFIFDSQDEDL---GAAPRFRLGLGLEHLAQ 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ LG+ L+L + S L L + + A V + YDP S RD IKE L G++
Sbjct: 68 RLERLGSRLIL-RRGSALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETLKSQGVA 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
SY+G+LL+EPW + + G + + +W + ++ + P ++ P + +
Sbjct: 127 AHSYSGNLLFEPWTVETKTGGMYRVYTPFW-RAVRGRDVPGLLVAPGTIPAPEQWPNSDQ 185
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ L + + L G A L EF+E + RY R + TS LS
Sbjct: 186 LDTWKLAAAMRRGAPVLAAHC-RVGEEAAQDRLDEFIETGIARYQDLRDLPAVDGTSGLS 244
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
L +GE+S Q +W + E +G FL+ + RE++ +L F+ P
Sbjct: 245 ENLAWGEISP----QRMWHR----GAEAMAQGAAGAETFLKEVVWREFAYHLMFHTPHIL 296
Query: 305 ERPLLSNLKYFPW--HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ + F W + D AW+QGRTGY VDA MREL+ TG +HNR R+IV+SF
Sbjct: 297 TKSWREEWQSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNRARMIVASFL 356
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K +L WR G K+F L+D D + +GWQ+++GS PD R+ +P+ Q KFDP+
Sbjct: 357 TKHMLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPDGQLDKFDPK 416
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G Y QW+ E P + + A P K+ + + P+PI+DL GRER +A
Sbjct: 417 GRYQAQWIAEGNPKPPDTARAFFTACP---KSWQLSADMARPRPILDLKAGRERALEA 471
>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
Length = 458
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 163/493 (33%), Positives = 244/493 (49%), Gaps = 55/493 (11%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR+DLR+ D AL AAA +G V PVY Q+ G SRWWL SL+ L ++
Sbjct: 5 VLLWFRQDLRLSDQAALIAAASEGPVVPVYVLDDDTPRQWVMGGASRWWLHHSLASLDRA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISA-IKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ G+ L L + +S A +L+ ++ A +V H Y+P R+ EK V +
Sbjct: 65 LREKGSRLTLRRGKS--ADVLQALAKECGAGRVHALHHYEP--WWRN---AEKAVAKALD 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
+ ++G LL P + G + + + + + QM PA+ + TID
Sbjct: 118 LCLHDGILLLPPGAVRTGSGGIYKIYTPF-ARAVMEQMPPAAP------NRTPATIDAPE 170
Query: 185 -------IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ D GL + + W+PG A + F+++ + Y R
Sbjct: 171 SWPETDRLSDWGLLPTKPDWAGGF-KKDWTPGEDGARANVAAFIDE-VGDYPTGRNLPSV 228
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP+LH+GE+S V+ + FL+ + R+Y+
Sbjct: 229 EGTSRLSPHLHYGEVSPAYVWHRV------------TASNADAEIFLKELIWRDYTHTQI 276
Query: 298 FNFPFTHERPLLSNLKYFPWHADL----GNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
P + + W DL G+F AW++GRTGYP+VDAGMR+LW TGW+HNR
Sbjct: 277 CEMPAYGSKNARDDFDRMDWR-DLREARGDFVAWKKGRTGYPIVDAGMRQLWTTGWMHNR 335
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+I +SF +K LL+ WR G K+FWDTL+DAD + + WQ+++GS D + R+ +P
Sbjct: 336 VRMIAASFLIKHLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPL 395
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLD 471
Q KFD G+Y+RQW+PELA + E IH P DA P+ +YP II
Sbjct: 396 TQSEKFD-AGDYIRQWVPELAALSNEVIHDPDAHDARPD-----------DYPAKIIGHR 443
Query: 472 LGRERLTQAIFKM 484
GRER A ++
Sbjct: 444 AGRERALAAYRRI 456
>gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 355
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 201/357 (56%), Gaps = 13/357 (3%)
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I+V S+NG LL EPW+ + G + + ++ + ++++ ++I P +
Sbjct: 6 INVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKP-NFSYLRKLNNS 64
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
+++ L L + N + + W G S + ++L EF++ + Y R + +STS
Sbjct: 65 ENLDSLKLIEPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDSTSK 122
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSPYLHFGE+S ++F + + EE+F ++ + R++S Y + +P
Sbjct: 123 LSPYLHFGEISPNQIFNAVQSLDYIGNNEEHF---------IKELVWRDFSYYQIYYYPE 173
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
H + + F W D K W++G+TG P+VDAGMRELW G++HNR+R+IV+SF
Sbjct: 174 LHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVASFL 233
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
+K L+ W++G K+F+DTL DAD + WQ+++G D R+ +P +Q KF+
Sbjct: 234 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 293
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
EY+R+++PEL +P + I PW+A VL+ AG+ LG NYPKPI+DL R+R Q
Sbjct: 294 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQ 349
>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
Length = 481
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 158/491 (32%), Positives = 239/491 (48%), Gaps = 35/491 (7%)
Query: 1 MGGNRTIV-WFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQS 58
M R I+ W RRDLR+ D+P LAAAA G V PV+ +E G + L
Sbjct: 1 MSETRAIIYWLRRDLRLADHPGLAAAAASGRPVVPVFI---HDESVAALGAAPAFRLGLG 57
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L G +L +G+ L+L + S A L I+ A V + Y P ++ RD ++K L
Sbjct: 58 LERFGATLGDMGSRLIL-RRGSAPAVLQALIAETGAGAVWWTREYTPQAITRDSALKTAL 116
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-----PASILPP--W 171
+ GI +S+ G LL+EPW + G + + +W Q ++ PA + PP W
Sbjct: 117 QQAGIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPDPAPARVRPPEAW 176
Query: 172 RLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
+A + D GL + + A++ +PG + A + L F+ + +Y
Sbjct: 177 PGSEA--------LSDWGLGAPMRRGA-AVVATHQAPGEAAALERLDRFIATGIGQYDAC 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R G+ TS LS L GE+ R LW + A E +G + FL+ + R+
Sbjct: 228 RDLPAGDGTSTLSDALSLGEIGPR----TLWHR----AGEAAHKGAQGAETFLKQLVWRD 279
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGW 349
++ +L ++ P + FPW D + F AW +GRTG PLVDA MRE++ TG
Sbjct: 280 FAYHLMYHTPHLLSENWRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGR 339
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR R+I +S+ K L++ W+ GM +F D L D D + +GWQ+++G PD R+
Sbjct: 340 MHNRARMIAASYLTKHLMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRI 399
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+PE Q KFDP+G Y W+ E P +DA P ++ + +YP PI+
Sbjct: 400 FNPETQAKKFDPKGRYRNHWIAEGQAEPPRAALSYFDAVP---RSWNLRPDASYPPPIMA 456
Query: 470 LDLGRERLTQA 480
LD GR R A
Sbjct: 457 LDQGRRRALSA 467
>gi|306019717|gb|ADM78912.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019719|gb|ADM78913.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019721|gb|ADM78914.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019723|gb|ADM78915.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019725|gb|ADM78916.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019727|gb|ADM78917.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019729|gb|ADM78918.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019731|gb|ADM78919.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019733|gb|ADM78920.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019735|gb|ADM78921.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019737|gb|ADM78922.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019739|gb|ADM78923.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019741|gb|ADM78924.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019743|gb|ADM78925.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019745|gb|ADM78926.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019747|gb|ADM78927.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019749|gb|ADM78928.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019751|gb|ADM78929.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019753|gb|ADM78930.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019755|gb|ADM78931.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019757|gb|ADM78932.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019759|gb|ADM78933.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019761|gb|ADM78934.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019763|gb|ADM78935.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019765|gb|ADM78936.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019767|gb|ADM78937.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019769|gb|ADM78938.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019771|gb|ADM78939.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019773|gb|ADM78940.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019775|gb|ADM78941.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019777|gb|ADM78942.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019779|gb|ADM78943.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019781|gb|ADM78944.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019783|gb|ADM78945.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019785|gb|ADM78946.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019787|gb|ADM78947.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019789|gb|ADM78948.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019791|gb|ADM78949.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019793|gb|ADM78950.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019795|gb|ADM78951.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019797|gb|ADM78952.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019799|gb|ADM78953.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019801|gb|ADM78954.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019803|gb|ADM78955.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019805|gb|ADM78956.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019807|gb|ADM78957.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019809|gb|ADM78958.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019811|gb|ADM78959.1| cryptochrome 1-like protein [Picea sitchensis]
Length = 193
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 111/195 (56%), Positives = 145/195 (74%), Gaps = 3/195 (1%)
Query: 52 RWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRD 111
RWWLKQSL++L SL++LGA L+ ++ ++++A+L+ + A AT++ +NHLYDP+SLVRD
Sbjct: 1 RWWLKQSLAHLDSSLRNLGARLITKRSTNSISAILQVVQATGATQLFYNHLYDPLSLVRD 60
Query: 112 HSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-ASILPP 170
H +K+ L GI V+S+N DLLYEPWE+ DE GHAF+TF YW+KCL M +P A +LPP
Sbjct: 61 HKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPP 120
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
R+V AG + C +DL LEDESEK+SNALL R WSPGWS+ADK LT F+ LL Y
Sbjct: 121 KRIV--AGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAI 178
Query: 231 NRQKLGGNSTSLLSP 245
NRQK +TSLLSP
Sbjct: 179 NRQKADSATTSLLSP 193
>gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
Length = 479
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/481 (32%), Positives = 241/481 (50%), Gaps = 27/481 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFRRDLR+ D+PAL+AA R G + PV+ ++ G +W L L +
Sbjct: 11 ILWFRRDLRLSDHPALSAAMRTGRPIVPVFI---LDDAVQALGAAPKWRLGLGLEAFAKG 67
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L +G+ L+L + + L L I A V ++ Y+PVS+ RD IK L GI V
Sbjct: 68 LSQIGSRLIL-RQGAALDVLESLIRDTGAGTVFWSRGYEPVSIARDTRIKSALTGQGIEV 126
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EPW I + G F F W + +Q + P P RL+ G +
Sbjct: 127 RSFAGHLLFEPWTIATKSGQPFRMFTPMW-RAVQGRDVPTPEPGPARLMAPEGWPGSDQL 185
Query: 186 EDLGLEDESEKSSNALLGRGW-SPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
D L + + A + R + PG A L F+ + + +Y + R ++ TS LS
Sbjct: 186 ADWQLGRDMRR--GARIARPFIRPGEVAARDQLDGFLHR-IDQYAEQRDRVDKTGTSDLS 242
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFE--GKESVTFFLRAMGLREYSRYLCFNFPF 302
YL GE+ R ++W + +N G +LR + RE++ +L +++P
Sbjct: 243 EYLSLGEIGPR----------MIWHRVQNAARTGAPGADAYLRQLVWREFAYHLMYHWPH 292
Query: 303 THERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
FPW D +AWRQ RTG PLVDAG+R+++ TG +HNR R+IV+S
Sbjct: 293 LLTDNWKPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVTGRMHNRARMIVAS 352
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
+ K L+ W+ G +F D L D D + +GWQ+++GS PD R+ +P+ Q +FD
Sbjct: 353 YLTKHLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYFRIFNPQTQRVRFD 412
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+ Y+R+W+ E P +DA P ++ G+ YP+P++ L GR R +A
Sbjct: 413 PDEGYIRRWIAEGQARPEATALAYFDAIP---RSWGLSPDDPYPEPVVGLKQGRTRALRA 469
Query: 481 I 481
Sbjct: 470 F 470
>gi|359401211|ref|ZP_09194182.1| deoxyribodipyrimidine photo-lyase [Novosphingobium
pentaromativorans US6-1]
gi|357597460|gb|EHJ59207.1| deoxyribodipyrimidine photo-lyase [Novosphingobium
pentaromativorans US6-1]
Length = 469
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 235/480 (48%), Gaps = 38/480 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR+ D ALAAAA G V PVY + G SRWWL SL+ L +
Sbjct: 17 VIVWFRRDLRLSDQAALAAAAAQGPVLPVYVLDDETPRHRAMGGASRWWLHYSLASLDAT 76
Query: 66 LKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L+ G+ L+L K E LAAL + A ++V H Y+P + S+ ++L
Sbjct: 77 LREKGSRLILRKGKCEDVLAALAQETGA---SEVHALHHYEPWWRNAEKSVGKRL----- 128
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
++ ++G+ L P + G + + +W ++ P P +
Sbjct: 129 TLHLHHGNYLAPPGTVTTGSGSPYKIYTPFWRALIERMPPPEPQRRPQNIASPDSWPASD 188
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+++D GL + + W PG A K L F + H Y R TS L
Sbjct: 189 ALDDWGLLPTQPDWAGGMRDM-WEPGEEGAKKRLRAFAD-HASHYEGQRNLPAVEGTSFL 246
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S +V+ SV FL +G R+Y++ + FP
Sbjct: 247 SPHLHFGEVSPAQVWHA------------TSSAGGSVATFLGEIGWRDYAQNVIVQFPDY 294
Query: 304 HERPLLSNLKYFPWHAD---LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
R +FPW + + +AW+ G TGYP+VDAGMR+LW TGW+HNR+R+I +S
Sbjct: 295 GSRSARDTFDHFPWRSGKEAQEDLRAWQMGMTGYPIVDAGMRQLWHTGWMHNRVRMIAAS 354
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ W+ G ++FWDTL+DAD + + WQ+ +GS D + R+ +P Q KFD
Sbjct: 355 FLIKHLLIDWQEGEQWFWDTLVDADYASNAVNWQWTAGSGVDSNMFVRIMAPLTQSEKFD 414
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y+R+W+PELA +P IH P + G +YP II+ GRER A
Sbjct: 415 -AAAYIREWVPELADLPDAEIHD-----PGPMYRPG-----DYPARIIEHRAGRERALAA 463
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/482 (32%), Positives = 240/482 (49%), Gaps = 42/482 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE----EGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLRI DN LA A R S V +C P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNIGLATA-RQQSAKVVGIFCLDRNILNRDDVAPARVT--YMIGCLQKL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ LG++L++ + + +L + + AI A V +N +P + RD S+ L + G
Sbjct: 63 SSRYRELGSQLLIIQDDPSLG-IPKLAIAINAKAVFWNRDVEPYAKQRDLSVSNALQQAG 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTID 181
I VQ++ +L+ P EI +T + +W K + + +P LP + +
Sbjct: 122 IKVQNFWDQVLHAPDEIRSGTKTPYTIYTPFWKKWNSKPKAQPVETLP----ITYLELMT 177
Query: 182 GCSIEDLGLEDES----EKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKN 231
G + E+ L +E+ + + LG W PG A + L EF ++ + +Y
Sbjct: 178 GLTTEEQELANEAGAIETVPTASSLGFIWENPLVIEPGEDAAQQKLEEFCDRAIYQYQGQ 237
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R N TS LS L FG + +R V+Q QI+ + E S+ + + + RE
Sbjct: 238 RNSPAINGTSQLSAALKFGAIGIRTVWQA---TQIVMDTCHSEEAYTSIRTWQQEIAWRE 294
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ ++ +NFP + P K FPW D F+AW +G+TGYP++DA MR+L TGW+H
Sbjct: 295 FYQHAMYNFPELADGPYRPAFKDFPWDNDEKLFQAWCRGKTGYPIIDAAMRQLNQTGWMH 354
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D L R+ +
Sbjct: 355 NRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLCANNGGWQWSASSGMDPKPL-RIFN 413
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGV----ELGLNYPKPI 467
P Q KFDPEGEY+R W+PEL R+ T+ VL + L+YP PI
Sbjct: 414 PATQAQKFDPEGEYIRHWVPELRRVDTK-----------VLLTGNISSLERRLLHYPSPI 462
Query: 468 ID 469
+D
Sbjct: 463 VD 464
>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
Length = 472
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/483 (32%), Positives = 243/483 (50%), Gaps = 20/483 (4%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M + ++WFRRDLR+ D+ AL AA D V PV+ + E G + L S+
Sbjct: 1 MSKSPILMWFRRDLRLGDHEALTAACDADRPVIPVFIYDELTESM---GAAPKMRLGLSV 57
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ L SL G++L+L + ++ L L E I A V ++ LYDP RD +K L
Sbjct: 58 ADLAASLNEKGSKLILRRGKA-LDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALK 116
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ GI+ +S+ G +L+EPW + + G + + W K ++ PA++ P +
Sbjct: 117 DDGITAESFKGHVLFEPWTVETKIGGFYKVYTPMW-KSVRGNDVPAALPTPGTIPVPDSW 175
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
I D ++ + ++ L + G + A L F+ H+ Y KNR +
Sbjct: 176 PKSDDIADWQMDAAMHRGADTLKSHC-TVGEAAASHRLGAFIANHVANYVKNRDLPAVDG 234
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS L +GE+S RK + W Q L +GK FL+ + RE++ +L ++
Sbjct: 235 TSGLSENLTYGEISPRKCWHSGW--QAL------NDGKGDAETFLKELVWREFAYHLAYH 286
Query: 300 FPFTHERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
P + FPW+ D L KAW+QGRTG VDA MRE++ TG +HNR R+I
Sbjct: 287 TPRITTDNWKEDWDAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMI 346
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+S+ K LL W+ GM +F D L+D D + +GWQ+ +GS PD R+ +P Q
Sbjct: 347 VASYLTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLD 406
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFD + Y+++W+ E + P+ +D P ++ G+ +YP PI+ D+GR R
Sbjct: 407 KFDKDRAYIKKWIAEGTKRPSATALSYYDMIP---ESWGMTAQDSYPDPIVPADVGRSRA 463
Query: 478 TQA 480
A
Sbjct: 464 LDA 466
>gi|365838261|ref|ZP_09379611.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
gi|364560222|gb|EHM38167.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
Length = 476
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 161/487 (33%), Positives = 252/487 (51%), Gaps = 36/487 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLRI DN AL AA +D V VY P++ Q ++ Q+L L
Sbjct: 6 VVWFRNDLRITDNRALHAACQDPLAKVIAVYIATPEQWKQHDMAPRQAAFIHQNLQCLVH 65
Query: 65 SLKSLGAELVLFKTESTLAA-----LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L G + LF +ST L++ +AT + +N Y+ RD ++ E L+
Sbjct: 66 ALA--GKNIPLFYHQSTDFTASAKWLVDFCQKNEATDLFYNRQYELNERRRDDAVAE-LL 122
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ S++ LL P + G + F + + LQ ++ + + R + A T
Sbjct: 123 AGTCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQ-RLTHSDV----RSLPAPKT 177
Query: 180 ID-GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
D C + ++ D ++ +++L + G A + L F +H+ Y + R +
Sbjct: 178 RDQACEMSEIKPFDYPQQGLDSVL---FPTGEEAALQRLRVFCREHVQDYAQQRDIPAVD 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLC 297
TS+LSPYL G LS R QCL ++L + E +ES F +L + RE+ R+L
Sbjct: 235 GTSVLSPYLAVGVLSPR---QCL--NRLLAECPDTLEDRESGAFVWLNELVWREFYRHLL 289
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P +P ++ + W D+ + AW+QG+TGYP+VDA MR+L TGW+HNR+R+
Sbjct: 290 VAYPKLCRHKPFIAWTDHVRWSGDIEHLTAWQQGKTGYPIVDAAMRQLNHTGWMHNRLRM 349
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF VK LL+ WR G YF L+D DL + GWQ+ + S D R+ +P QG
Sbjct: 350 IVASFLVKDLLINWRAGECYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQG 409
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
+FD +G+++R+W+PELA +P IHHP W +K V L+YP+P++D L R
Sbjct: 410 ERFDKKGDFIRRWIPELADVPDSDIHHPHQW-----AMKQCRV---LDYPQPLVDHALAR 461
Query: 475 ERLTQAI 481
++ QA
Sbjct: 462 KQTLQAF 468
>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
Length = 473
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 155/481 (32%), Positives = 242/481 (50%), Gaps = 28/481 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR+ D+PALAAA + G V P++ + + G ++ L +L+ LG +
Sbjct: 8 IVWFRRDLRLSDHPALAAACKTGRPVIPLFIHDNQSDAL---GAAPKFRLGLALACLGDT 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
LK G+ L+L + ++ L L + I A V ++ LYDP ++ RD +K+ L E G+
Sbjct: 65 LKEKGSRLILRRGDA-LDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDALKEDGVEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
S+ G L++EPW + + G + F YW K ++ + + P + D +
Sbjct: 124 CSFAGHLMFEPWTVETKTGGFYKVFTPYW-KSVRGRDVAEPLATPSEIRAPEDWPDSDVL 182
Query: 186 EDLGLEDESEKSSNALLGRGWSP----GWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+D ++ E ++ + + P G + A L F+ + Y ++R G + TS
Sbjct: 183 DDWQMDAEMQRGRDVV-----RPYVRLGEAAAQARLGSFIADIVDGYDESRDMPGEDGTS 237
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS L GE+S + + EGK FL+ + RE++ +L ++ P
Sbjct: 238 GLSENLSLGEISPAHCWHA--------GQRAMQEGKRGAETFLKELAWREFAYHLMYHTP 289
Query: 302 FTHERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
++ + FPW+ D AW+QGRTG P VDA MREL TG +HNR R+IV+
Sbjct: 290 RILDQNWREEWQAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGRMHNRGRMIVA 349
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
S+ K L+ WR G K+F + L+D D + +GWQ+ +GS PD R+ +PE Q +F
Sbjct: 350 SYLTKHLMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRIFNPETQLDRF 409
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D Y R+W+ E P+E +DA P + G +YP PI+DL GR R
Sbjct: 410 DKGRNYTRRWIAEGREKPSEDALEYFDAIP---RRWGRRPDDDYPDPIVDLSEGRARALD 466
Query: 480 A 480
A
Sbjct: 467 A 467
>gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
Length = 483
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 239/475 (50%), Gaps = 19/475 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++W RRD R+ D+P L+AAA G V ++ P E G +W L+Q+L+ +
Sbjct: 8 LLWLRRDFRLSDHPMLSAAAASGRPVLALFILDPLAEAY---GAAPKWRLEQALAAFAPA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L + G LVL + LA L + ++ A V ++ DP ++ RD +K L G+
Sbjct: 65 LAACGVPLVL-RRGPALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTALRAEGLEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S++G LL+ PW + +G + + YW + + P L P ++ + G S+
Sbjct: 124 RSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAPP--LAPVTALRPGPVLRGESL 181
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ LGL + + A++ + G + A L F+ + + Y R L N+TS LS
Sbjct: 182 DALGL-GRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATSELSE 240
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L +GE+S R ++ + EG+ FL+ + RE++ +L F +P
Sbjct: 241 HLAWGEISPRVIWHA--------GAQAMAEGRAGAETFLKELVWREFAWHLMFYYPRLAT 292
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
+ FPW + + WR+G+TG P+VDA MRE++ TG +HNR R+IV+S+ K
Sbjct: 293 ENWRPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTKH 352
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL WR G+ +F D L+D D + +GWQ+++G PD R+ +P Q KFDPEG Y
Sbjct: 353 LLTDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGRY 412
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
R WL E R + + A P ++ G+ G P+IDL GR+R A
Sbjct: 413 RRAWLAEGNRHAPQTAQDFFAAVP---RSWGLVPGAALSAPLIDLAAGRDRALAA 464
>gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
Length = 468
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 232/478 (48%), Gaps = 21/478 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TI W RRD R+ DNPAL AA G+V P++ EG G +W L + ++
Sbjct: 3 TIYWVRRDFRLSDNPALVAACERGAVVPLFICDEVIEGH---GAAPKWRLGLGVEAFAEA 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L ++G++L+L + ++ L L I+ + A V +N LYDP S RD ++K L E G+
Sbjct: 60 LHAVGSKLILRRGDA-LPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAALKEDGVEA 118
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
S+ G +L+EPW + + G + + +W A P D S
Sbjct: 119 ISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAPDTWPASDDLSD 178
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
LG ++ ++ + G A L F+ + Y R L N TSLLS
Sbjct: 179 WHLG---KAMNRGAEVVAPHLNVGEQAAQGRLGAFIGNGIDDYADARDNLAKNGTSLLSE 235
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
L +GE+S R QC Q A +GK FL+ + R+++ +L + P
Sbjct: 236 NLAYGEISAR---QCWHAGQRAMA-----DGKPGAETFLKEVVWRDFAYHLVHHTPRITT 287
Query: 306 RPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ FPW+ D AW+QGRTG +VDA MRE++ TG +HNR R++V+S+
Sbjct: 288 ANWREEWEAFPWNTDPDTPEVTAWKQGRTGMAVVDAAMREMYVTGRMHNRARMLVASYLT 347
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L+ W+ GM +F + L+D D + +GWQ+ +GS PD R+ +PE Q KFD G
Sbjct: 348 KHLMTDWKIGMDWFEECLVDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQAEKFDKAG 407
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK-PIIDLDLGRERLTQA 480
Y +WL E+ P + +DA P +A G++ + YP PI+ GR+R A
Sbjct: 408 RYRMRWLAEITGKPQDTASAYFDAVP---RAWGLDPTMGYPSAPIVTASEGRKRALDA 462
>gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase [Roseobacter denitrificans OCh
114]
gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
denitrificans OCh 114]
Length = 472
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 253/487 (51%), Gaps = 28/487 (5%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M + +VWFRRDLR+ D+PAL AA + G+ V PV+ + E G RW L +
Sbjct: 1 MSTSPVLVWFRRDLRLSDHPALDAAVKSGNPVIPVFIHDDQVETL---GAAPRWRLGLGI 57
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L ++L+ L + L+L + + L L I A V ++ LYDP ++ RD +K L
Sbjct: 58 GHLSETLEGLNSRLILRRGPA-LETLRTLILETGAGAVFWSRLYDPAAVERDTEVKAALK 116
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ GI +S+ G L++EPW + + G + + +W+ ++ A + P R+ A
Sbjct: 117 QDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVD-APLSAPSRIDAPAAW 175
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
++ D + ++ + A++ G + A L F+++ + Y R + +
Sbjct: 176 PGSDTLSDWNMGAAMDRGA-AVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAIDG 234
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS L GE+S QC + L A+EE G E+ FL+ + RE++ +L +
Sbjct: 235 TSGLSENLALGEISPH---QCWYAG--LRAREEEKPGAET---FLKELVWREFAYHLMHH 286
Query: 300 FPFTHERPLLSNLK----YFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
P R L N K FPW+ D + W+QGRTG VDA MRE++ TG +HNR
Sbjct: 287 TP----RILTGNWKEDWDSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNR 342
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+S+ K LL W+ G+K+F D L+D D + +GWQ+ +GS PD R+ +P
Sbjct: 343 GRMIVASYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPV 402
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q KFD +YV++W+ E R PT+ +DA P +A G+ +YP P++ D G
Sbjct: 403 TQLDKFDKNRQYVKRWVAEERRAPTQTALSYFDAIP---RAWGLSADQDYPAPVVAADEG 459
Query: 474 RERLTQA 480
R+R +A
Sbjct: 460 RKRALEA 466
>gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 476
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 249/487 (51%), Gaps = 36/487 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLRI DN AL AA +D V VY P++ Q ++ Q+L L
Sbjct: 6 VVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNLQCLVH 65
Query: 65 SLKSLGAELVLFK---TESTLAA--LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L G + LF T+ T +A L++ + T + +N Y+ RD ++ E L
Sbjct: 66 ALA--GKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTELLA 123
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAG 178
+ + S++ LL P + G + F + + LQ + LP + + A
Sbjct: 124 GV-CGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTREQA- 181
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
C + ++ D S++ +++L + G A + L F +H+ Y + R +
Sbjct: 182 ----CEMSEIKPFDYSQQGLDSVL---FPAGEEAALQRLRVFCREHVQDYAQQRDIPAVD 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLC 297
TS+LSPYL G LS R QCL ++L + E ES F +L + RE+ R+L
Sbjct: 235 GTSVLSPYLAVGVLSPR---QCL--NRLLAECPDTLEDGESGAFVWLNELVWREFYRHLL 289
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
P +P ++ + W D+ + AW+QG TGYP+VDA MR+L TGW+HNR+R+
Sbjct: 290 VAHPKLCRHKPFIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRM 349
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF VK LL+ WR G +YF L+D DL + GWQ+ + S D R+ +P QG
Sbjct: 350 IVASFLVKDLLINWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQG 409
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
+FD +G+++R+WLPELA +P IHHP W +K V L+YP+P++D L R
Sbjct: 410 ERFDKKGDFIRRWLPELADVPDSDIHHPHQW-----AMKQCRV---LDYPQPLVDHALAR 461
Query: 475 ERLTQAI 481
++ QA
Sbjct: 462 KQTLQAF 468
>gi|383645238|ref|ZP_09957644.1| deoxyribodipyrimidine photo-lyase [Sphingomonas elodea ATCC 31461]
Length = 457
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 164/480 (34%), Positives = 244/480 (50%), Gaps = 37/480 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFRRDLR+ D PALAAA G+V PVY + G SRWWL SL+ L
Sbjct: 5 VLLWFRRDLRLADQPALAAALAAGTVIPVYVLDDETAKHRAMGGASRWWLHHSLASLDAD 64
Query: 66 LKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L+ G+ L+L K++ LA L E + A AT H Y+P + ++ ++L
Sbjct: 65 LREKGSRLILRRGKSDEELARLAEEVGA--ATVHCIRH-YEPWWRNAERAVAKRL----- 116
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
++ ++G+ L P + G + F +W + P R+ A
Sbjct: 117 TLCCHDGNYLLPPGAVTSGAGTPYRIFTPFWRSLRDRLPPAPPLRAPARIAAPATWPASD 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+++D L + W PG + A K L F + H RY R +S L
Sbjct: 177 ALDDWKLLPTKPDWAEGFRAE-WEPGEAGAHKRLRRF-KDHAARYDDTRNLPSIEGSSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP-- 301
SP+LHFGE+S +V+ L E+ G+ V +LR +G R++++ L FP
Sbjct: 235 SPHLHFGEVSPAQVWHAL----------EDAGGQ--VEEYLRELGWRDFAQNLICQFPDY 282
Query: 302 -FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
+ RP + + + +AW++G+TGYP+VDAGMR+LWATGW+HNR+R+I +S
Sbjct: 283 AAKNGRPSFDAMAWRSGKEAEADLRAWQRGQTGYPIVDAGMRQLWATGWMHNRVRMIAAS 342
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWDTL+DAD + + WQ++SGS D + R+ +P Q KFD
Sbjct: 343 FLIKHLLIDWREGERWFWDTLVDADYGSNAVNWQWVSGSGVDSSQWSRVMAPLSQSEKFD 402
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G Y+R W+PELA++P IH P + AG +YP+ I GRER A
Sbjct: 403 AAG-YIRHWVPELAKLPDAAIHDP--------EEAGCR-PRDYPRKRISHRDGRERALAA 452
>gi|428314222|ref|YP_007125199.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
gi|428255834|gb|AFZ21793.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
Length = 478
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 236/476 (49%), Gaps = 36/476 (7%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA A V V+ P E P RVS ++ L L
Sbjct: 6 LFWHRRDLRISDNIGLAAARASSQKVVGVFCLDPNILERDDVAPARVS--YMIGCLQSLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q G++L++ + AL + +A+KA + +N +P S RD + + L + GI
Sbjct: 64 QGYTQAGSQLLILH-DDPCKALPDLAAALKAKAIFWNWDVEPYSKQRDRLVSDALTQKGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASIL--------PPWRLV 174
V + LL+ P EI+ + +T + +W Q +M P L
Sbjct: 123 EVHHHWDQLLHAPEEIHSKSQEPYTVYTPFWKNWSNQAKMAPVDTLHQAEGLTPEEQETA 182
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
Q AG I + +DLG ++E LL + PG A L EF + Y + R
Sbjct: 183 QQAGAIALPTAKDLGFVWDNE-----LLTQ---PGEEAAQAKLAEFSTHAITEYEEQRNF 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKE-ENFEGKESVTFFLRAMGLREYS 293
TS LS L FG + +R V W I K + E + S+ + + + RE+
Sbjct: 235 PAIKGTSELSAALKFGAIGIRTV----WAATIAALKNSRSDETQASIQAWQKELAWREFY 290
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ ++FP + P K FPW + F+AW +G+TGYP+VDA MR+L GW+HNR
Sbjct: 291 QHALYHFPELADGPYRDTFKDFPWDNNPQLFQAWCEGKTGYPIVDAAMRQLNTLGWMHNR 350
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K LL+ W+WG KYF L DADL + GWQ+ + S D L R+ +P
Sbjct: 351 CRMIVASFLTKDLLINWQWGEKYFLQKLYDADLSANNGGWQWSASSGMDPKPL-RIFNPA 409
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+R+WLPEL + TE++ D PP A LNYP PI+D
Sbjct: 410 SQAKKFDPEGEYIREWLPELRSVDTEYLISG-DIPPLERHA------LNYPAPIVD 458
>gi|429207044|ref|ZP_19198304.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
gi|428190039|gb|EKX58591.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
Length = 470
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 156/477 (32%), Positives = 237/477 (49%), Gaps = 22/477 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFRRDLR+ DNP LA AA G + P++ P+ E G +W L + ++
Sbjct: 7 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ LG+ LVL + LA L ++ A V ++ L++P RD +K L + GI
Sbjct: 64 LEGLGSRLVL-RRGPALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 122
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG--TIDGC 183
S+ G ++EPWE+ +G + + +W K ++ + AS PP RL A +
Sbjct: 123 ASHAGHTIFEPWEVETGQGGFYRVYTPFW-KAVKDRPVAASSPPPARLPSPAKWPASERL 181
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ DLG + A++ + G + A + L F+ L RY R + TS L
Sbjct: 182 ASWDLG---RAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPLTSRL 238
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
S L +GE+S R ++ EG+ FL+ + RE+ +L ++ P
Sbjct: 239 SENLTYGEISARSLWHA--------GMRARAEGRAGAEKFLQEIAWREFGWHLLYHTPEI 290
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R + FPW D + + WR+G TG P VDA MREL+ TG +HNR R+I S+
Sbjct: 291 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 350
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL WR G +F D L+D D + LGWQ+++GS PD R+ +P Q KFDPE
Sbjct: 351 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 410
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y ++++ E+AR P ++A P ++ G+ YP P++ L GRER A
Sbjct: 411 AYRQRFVAEIARRPGPEALAFFEAVP---RSWGLAPDRCYPGPVVGLAEGRERALAA 464
>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
Length = 474
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 243/478 (50%), Gaps = 21/478 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I W RRDLR+ DNPAL AAA G+ V PVY ++E G ++ L L + GQ
Sbjct: 7 VIWWIRRDLRLCDNPALTAAAESGAPVLPVYILDEQDEAL---GAAPKFRLGLGLDHFGQ 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L G+ L+L + ++ L L + I A V ++ LYDP ++ RD IK+ L E G++
Sbjct: 64 ELAKAGSCLILRRGKA-LRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIKQTLKEQGVA 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGC 183
V+S+ G LL+EPW + + G + + +W ++ S+LP P ++
Sbjct: 123 VKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVD--SLLPAPGKIAAPDNWPASE 180
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ D + + ++ ++ R G + A + L F+E + Y R ++TS L
Sbjct: 181 DLADWRMAAAMRRGAD-VVARYCRVGETAALERLETFLEDSVDAYKARRDYPAEDATSGL 239
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
S L +GE+S +++ Q A E +G E FL+ + RE++ +L +N P
Sbjct: 240 SENLAWGEISPHRMWH-----QGSAAMERGSQGAE---HFLKEIVWREFAYHLMYNSPHI 291
Query: 304 HERPLLSNLKYFPWHADLG-NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ FPW + +AW++G TGY VDA MREL+ TG +HNR R+IV+SF
Sbjct: 292 LTESWREEWQEFPWSQKITPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARMIVASFL 351
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K L+ W+ GM +F DTL+D D + LGWQ+++GS PD R+ +P Q KFDPE
Sbjct: 352 TKHLMTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQLEKFDPE 411
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G Y +W+ E P +DA P + G+ +P++ L GR+R A
Sbjct: 412 GAYTSRWIAEGQDTPPRTALDFFDAAPLSWD---LSAGMAPAEPVVSLQAGRDRALTA 466
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/475 (32%), Positives = 242/475 (50%), Gaps = 34/475 (7%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN L+ A R V ++ P E+ P RV+ +L L L
Sbjct: 6 LFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEKDDVAPARVT--YLIGCLQELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q+ + G++L++ K + + A + ++KA V +N +P + RD + L E GI
Sbjct: 64 QNYQQAGSQLLILKGKPSQAIPI-LAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEKGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWR--------LV 174
+ + + LL+ P +I + + +W Q ++ P L + L
Sbjct: 123 ATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQQISLA 182
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ AG ID + +DLG E N L+ +PG + A + L EF + + Y + R
Sbjct: 183 KEAGIIDLPTAKDLGYLWE-----NPLM---LNPGETAAKERLQEFCKTSINNYQEQRDL 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TS LS L FG + +R V+Q L+ + E +ES+ + + + RE+ +
Sbjct: 235 PAIDGTSRLSAALKFGAIGIRTVWQATLE---LYENSRSDEVRESIQTWQQELAWREFYQ 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ + FP + P + FPW D F+AW +G+TGYP+VDA MR+L TGW+HNR
Sbjct: 292 HCMYFFPELADGPYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRC 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 352 RMIVASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKPL-RIFNPAS 410
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q K+DP+GEY+RQW+PEL + TE++ P + L+ G YP+PI+D
Sbjct: 411 QSQKYDPDGEYIRQWIPELKSLDTEYLVTG-KIPTSELRQCG------YPEPIVD 458
>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
Length = 467
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 234/481 (48%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC+ +K T KV FN RD + K E
Sbjct: 60 VDKTALLQIMF------GEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ A
Sbjct: 114 QEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA--- 165
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D E+L + E + + G A+ L F++ + Y K R + T
Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+SVR ++Q L +EN E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISVRTIWQAL---------QEN-EATEGRAIFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G+TG+PLVDA MR+L TGW+HNR+R++ +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P IQ KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++R+++ ELA +P ++IH P K G+ LG +YP PI+D +ER A
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
Length = 473
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 241/477 (50%), Gaps = 28/477 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++W+RRDLR+ D+PAL+AAA G V PV+ K++ G +W L + L S
Sbjct: 8 LLWYRRDLRLSDHPALSAAANAGRPVIPVFI---KDKSVNALGAAPKWRLGLGVGALADS 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ + + L+L + ++ L AL I A V ++ LYDP S+ RD IKE L GI
Sbjct: 65 LEGVSSRLILREGDA-LEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETLCNDGIEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G +++EPW + + G + + +W+ +EP + P L D ++
Sbjct: 124 KSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEP-PLSAPSDLPAPESWPDSDAL 182
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ GL ++ ++ ++ R G A L F+ + Y R G + TS LS
Sbjct: 183 DGWGLGAAMDRGAD-VVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRDIPGTDGTSNLSE 241
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
L GE+S + + A+ +GK+ FL+ + RE++ +L + P
Sbjct: 242 NLSLGEISPHQCWHA--------AQRALHDGKQGAETFLKELVWREFAYHLMHHTP---- 289
Query: 306 RPLLSNLK----YFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
R L N + FPW+ D KAW+QGRTG P VDA MREL+ TG +HNR R+IV+
Sbjct: 290 RMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGRMIVA 349
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
S+ K L+ WR G K+F L+D D + +GWQ+ +GS PD R+ +PE Q KF
Sbjct: 350 SYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQLDKF 409
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D +Y +W+ E P + +DA P + + +YP+ II LD GRER
Sbjct: 410 DKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSADD---DYPEKIIALDEGRER 463
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 245/477 (51%), Gaps = 31/477 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSL 59
N I W RRDLR+ DN L+ A + S V +C P RV+ ++ L
Sbjct: 3 NIIIFWHRRDLRVSDNIGLSQAYQKSSKL-VGLFCLDSNLLNRDDIAPARVN--YMLGCL 59
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L +S + LG++L++F+ E T + + A+ V +N+ +P S RD +KE L
Sbjct: 60 QHLQKSYQKLGSQLLIFQGEPT-KIIPKVADALNVDCVFWNNDVEPYSKERDKQVKEALE 118
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGH-AFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
E I ++Y LL+ P EI + + + + +W ++ E A I+ +++
Sbjct: 119 EKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKE--EKADIVESIEKLESLS 176
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKNR 232
+ +++DLGL D LG W PG + A + L F + + Y + R
Sbjct: 177 DEEINTVKDLGLIDLPTAKD---LGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQR 233
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
++TS LSP FG + +R+V+Q + + E +E++ + + + RE+
Sbjct: 234 NLPAIDATSKLSPAFKFGIIGIREVWQATVEA---YENTRSDEARENIQTWQQEIAWREF 290
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
++ + FP E P K FPW + +F+AW +G+TGYP+VDA MR+L TGW+HN
Sbjct: 291 YQHCLYFFPELAEGPYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHN 350
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D L R+ +P
Sbjct: 351 RCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL-RIFNP 409
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q K+DP+GEY+R W+PE++ + TE + PP + G YP+PI+D
Sbjct: 410 ASQAQKYDPDGEYIRLWVPEISSLDTECLVTG-KIPPLEAHSCG------YPQPIVD 459
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 234/480 (48%), Gaps = 38/480 (7%)
Query: 9 WFRRDLRIEDNPALAAAARDGSVFPVYTW----CPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
W RRDLR+ D+PAL A + G V PV+ KE + + +L L L +
Sbjct: 7 WIRRDLRLHDHPALEYALQKGRVIPVFILDDRLLQKEASK------RKQFLFSGLRQLDE 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ G++L++ + E LA L I A ++V Y P + RD I +L
Sbjct: 61 DLRKRGSQLIIRRGEP-LAELTRLIQETGAEEIVALEDYSPYARRRDSHIAREL-----P 114
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILPPWRLVQAAGTID 181
+ + G+ +Y P + G +T F + W K L P+ + P R +
Sbjct: 115 LHLFAGETVYPPSLVLKPDGSPYTVFTPFSRAW-KALPFA-SPSVVSLPERFPAVPDKLV 172
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
I + A+ + + PG A + L F+ Y R +L TS
Sbjct: 173 SLPIPE------------AIFLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPGTS 220
Query: 242 LLSPYLHFGELSVR-KVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
LSPY FG LS R VFQ M QI + +E K +L + RE+ + +++
Sbjct: 221 FLSPYFRFGMLSPRWAVFQVRKMIQITSSPDE----KRGYEAWLNELIWREFYISILYHY 276
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P L+ W +AW++G+TGYP+VDA MR+L ATGW+HNR R+IV+S
Sbjct: 277 PHVLAMAFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVAS 336
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ W+ G ++F L+D D + GWQ+ +G D R+ +P +Q +KFD
Sbjct: 337 FLTKDLLINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFD 396
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P+G Y++ W+PEL +PTE+IH PW P ++ + GV +G +YP P++D R R+ +A
Sbjct: 397 PQGRYIKTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGRVLEA 456
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 228/444 (51%), Gaps = 21/444 (4%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR++DN L A + + + V+ + PK + Q P R+ +L L
Sbjct: 3 NLILFWHRRDLRLDDNIGLNEAQQHSNKIVGVFCFDPKLLQSDQVAPARIK--YLLGCLK 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L K G+EL LF + A+ + + A+ V +NH +P RD +++ L
Sbjct: 61 ELAAGYKKAGSEL-LFLQADPVTAIPKLAETLNASAVFWNHDVEPYGRKRDRAVQSALEA 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I V + LL+ P EI + + + +W Q +P + P ++ G
Sbjct: 120 KNIPVHTVWDQLLHAPGEILTKGEDPYKVYTPFWKN---WQKQPKA-EPVGQIRHLTGLT 175
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKNRQK 234
D + + S + N L G W PG + A + L +F ++ +L Y +NR
Sbjct: 176 DSEQAKSATVGKISLPTLNDL-GLTWDNDLPLLPGETAARERLEQFCDRAILDYDQNRNY 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TS+LS L FG +S+R+++Q LW + E ++++T + + + RE+ +
Sbjct: 235 PAIDGTSVLSAALKFGAISIREIWQT---TVTLWEDTRSDEARDNITAWRQELAWREFYQ 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ + FP + P K FPW + +F+AW G+TGYP+VDA MR+L TGW+HNR
Sbjct: 292 HALYFFPELADGPDRDQFKDFPWDNNPDHFQAWCDGKTGYPIVDAAMRQLNTTGWMHNRC 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF TL D DL + GWQ+ + S D L R+ +P
Sbjct: 352 RMIVASFLTKDLIINWQWGEKYFMQTLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPAS 410
Query: 415 QGSKFDPEGEYVRQWLPELARMPT 438
Q KFDP+GEY+R WLPEL + T
Sbjct: 411 QAQKFDPDGEYIRYWLPELNALDT 434
>gi|393721719|ref|ZP_10341646.1| deoxyribodipyrimidine photo-lyase [Sphingomonas echinoides ATCC
14820]
Length = 458
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 229/446 (51%), Gaps = 33/446 (7%)
Query: 18 DNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFK 77
D PALAAA +G++ PVY + + G SRWWL SL+ L L+++G+ L+L +
Sbjct: 18 DQPALAAAIGEGAIVPVYVLDDETPKHYAMGGASRWWLHHSLASLDADLRAVGSRLILRR 77
Query: 78 TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPW 137
+ A L E + A +V ++P + ++ ++L + ++G+ L P
Sbjct: 78 GKCD-AVLAELATETGANRVHCIRHFEPWWRNAERAVAKRL-----DLICHDGNYLAPPG 131
Query: 138 EIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA-AGTIDGCSIEDLGLEDESEK 196
I G + F +W + LQ QM P + LP + A A + + GL
Sbjct: 132 SITTGSGGQYKIFTPFW-RALQQQMPPPAPLPKPSSIPAPAHWPRSERLNEWGLLPTKPD 190
Query: 197 SSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRK 256
S G WSPG + A L F ++H Y + R +S LSPYLHFGE+S +
Sbjct: 191 WSTGF-GADWSPGEAGAHHKLNGF-KRHAATYGETRNLPSVEGSSRLSPYLHFGEVSAAQ 248
Query: 257 VFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFP 316
V+ + SV FL +G R+Y++ + P R L P
Sbjct: 249 VWHAV------------AGAGGSVDTFLGELGWRDYAQTVILQLPDYGSRNGRPTLDTLP 296
Query: 317 WHAD---LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWG 373
W + KAW+ GRTGYP+VDAGMR+LWATGW+HNR+R+I +SF +K LL+ WR G
Sbjct: 297 WRTGPDAAADLKAWQLGRTGYPIVDAGMRQLWATGWMHNRVRMITASFLIKHLLIDWREG 356
Query: 374 MKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPEL 433
++FWD L+DAD + + WQ+ +G+ D + R+ +P +Q KF+ G+Y+RQW+PEL
Sbjct: 357 ERWFWDCLVDADYGSNAVNWQWTAGTGIDANMFVRIMAPLVQSPKFE-AGDYIRQWVPEL 415
Query: 434 ARMPTEWIHHPWDA-------PPNVL 452
A++ E IH P +A PP ++
Sbjct: 416 AQVRGEAIHDPDEAGCRPAAYPPKII 441
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 157/491 (31%), Positives = 240/491 (48%), Gaps = 32/491 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLK---QSLSY 61
IVWFRRDLR+ D+ AL AA G + PVY E+ V L +++
Sbjct: 3 AIVWFRRDLRLHDHAALHAAMLTGDPIIPVYI---VEDSLCLSAAVGDKRLHAHFSAIAA 59
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L +L LG L++ + E L + A K+ FN Y P + RD + E L
Sbjct: 60 LDDALVQLGGRLLIRRGEPQ-QVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLSRH 118
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILPPWRLVQAAG 178
G+ V + +L+EP EI ++ + F Y W + + P W L
Sbjct: 119 GVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDRPFPQPT--EWILFDRLK 176
Query: 179 TIDG---CSIEDLGLEDESEKSSNALLGRGWSP---GWSNADKVLTEFVEQHLLRYYKNR 232
+ ++E G N +G W G A K L +F+++ + Y + R
Sbjct: 177 ELPSEPVPTVEAFG--------RNRPMGTEWEMEQFGERAARKRLQQFLDRDIYTYKEKR 228
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
G N+TS LS L+ G LS+R V+ + +++L + E S+ FL + RE+
Sbjct: 229 DMPGVNATSRLSFALNAGTLSIRTVYHRV--QEVLASARG--EQVTSIEAFLTELIWREF 284
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+ + + P T L + W F W QG TGYP+VDA M++L TGW+HN
Sbjct: 285 YQQVLYFHPHTTNHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHN 344
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R+I +SF K LL+ WRWGM YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 345 RLRMITASFLTKDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNP 404
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
QG KFD +G +V+++LP L +P ++IH PWD P ++ + AG ++G +YP P +D
Sbjct: 405 VTQGEKFDRDGVFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVD-HA 463
Query: 473 GRERLTQAIFK 483
R +L A+F+
Sbjct: 464 QRRKLAMALFQ 474
>gi|390167728|ref|ZP_10219708.1| deoxyribodipyrimidine photo-lyase [Sphingobium indicum B90A]
gi|389589593|gb|EIM67608.1| deoxyribodipyrimidine photo-lyase [Sphingobium indicum B90A]
Length = 458
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/482 (32%), Positives = 242/482 (50%), Gaps = 41/482 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR+DLR+ D ALAAA ++G V P+Y + Q+ G SRWWL SL L
Sbjct: 5 VLLWFRQDLRLGDQAALAAAVQEGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSLDDD 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G+ LVL + + + +++ A +V H Y+P + ++ ++L +
Sbjct: 65 LRKKGSRLVL-RQGNCVDQIVQIAEETGARRVHALHHYEPWWRNAEKALGKRL-----DL 118
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
++G LL P + G+++ + + + + M PA + P R+ G S
Sbjct: 119 CLHDGALLLPPGAVRTGGGNSYRIYTPF-ARAVMHHMPPAEPVRAPSRIDAPGQWPKGDS 177
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ GL + + A R W+PG + A + F+++ Y + R +S LS
Sbjct: 178 LDRWGLLPTAPDWA-AAFSRDWTPGEAGARANVDAFLDE-AADYDRARNLPSREGSSRLS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S +V W + G + T FL+ + R+Y+ + P
Sbjct: 236 PHLHFGEVSPAQV----------WRQVAGAPG--NATTFLKELIWRDYAHTQIWAMPAYG 283
Query: 305 ERPLLSNLKYFPWHADL----GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PW DL G+F AW+ GRTGYP+VDAGMR+LW TGW+HNR+R+I +S
Sbjct: 284 SENARPAFDAMPWR-DLREAGGDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIAAS 342
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWDTL+DA + + WQ+++GS D + R+ +P Q KF+
Sbjct: 343 FLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFE 402
Query: 421 PEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
Y+R+W+PELA + + IH P DA P +YP I GRER
Sbjct: 403 -AAHYIRKWVPELAHLNDDVIHDPEAHDARP-----------ADYPAKCIGHREGRERAL 450
Query: 479 QA 480
A
Sbjct: 451 AA 452
>gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha
proteobacterium H17925_38M03]
Length = 466
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 229/481 (47%), Gaps = 24/481 (4%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+ W R D R N L A + V Y + ++ + +WWL +SLS +
Sbjct: 7 LFWLRDDFRFVKNHGLIEATTKHNQVVVFYLY---KKNIYNDQEAQKWWLSKSLSNFKKK 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L L L + +T S + + K + +N +Y+P L D + I
Sbjct: 64 LNELNIVLEIVETNS-FKIFFDALIKKKDFXIYWNKVYEPDYLKFDEYLLNIFKNNNIYX 122
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+ + G+ L E EI G F F +W + E I R+++
Sbjct: 123 KRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKFFSE--KIPSKERVIKKCKNKTNFFK 180
Query: 186 EDLGLED-ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ +E EK + W P +A K L +F+++ ++ Y + R TS LS
Sbjct: 181 NSISVEKILPEKDWFKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFPSIKGTSKLS 240
Query: 245 PYLHFGELSVRKVF-QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
P++ FG+L V ++ +C+ K K + FL +G RE++ L +FP
Sbjct: 241 PFIKFGQLHVETIWNECIKKKP----------KKIGTSKFLTEIGWREFNHSLINHFPHM 290
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ FPW + W++G TGYP+VDAGMREL++TGW+HNR+R+IV SF V
Sbjct: 291 LKSNYSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNRVRMIVGSFLV 350
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ W++G KYF + LLD ++ GWQ+++G D R+ +P +QG KFD +G
Sbjct: 351 KHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPILQGEKFDKDG 410
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
EYV++W+PEL + ++IH PW+ +LG +YP PI+ + RE+ A K
Sbjct: 411 EYVKKWVPELKNLSKKFIHKPWE-----FNNEKFKLGRDYPYPIVKHEEAREKALNAFKK 465
Query: 484 M 484
+
Sbjct: 466 I 466
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 151/486 (31%), Positives = 229/486 (47%), Gaps = 22/486 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+ W RRDLR DN +L+AAA GSV P + + P P RV+ ++ +SLS L
Sbjct: 5 VHWHRRDLRATDNHSLSAAAETGSVIPAFIFDPAVLEFASPPRVA--FMLESLSELRAWY 62
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ G +LV+ T L A +V +N Y ++ RD ++E L + GI
Sbjct: 63 RERGGDLVV-ATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREALTDAGIEAT 121
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
S + LL+EP I ++G + + +W K + E P + + S E
Sbjct: 122 SVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVSAPDGEQLASVSGDSLPSQE 181
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
LG +D +A G A + L F + RY R ++TS LSP+
Sbjct: 182 ALGFDDPEATIPDA--------GMEAARRRLETFCADPIYRYADQRDDPAADATSGLSPH 233
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHER 306
L +G + +R V++ L + ++ + +S F + R + ++ P T
Sbjct: 234 LKWGTIGIRTVYEALDRAK---SEAPDEAAADSCEEFESQLAWRAFYAHVLDTNPHTVTA 290
Query: 307 PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVL 366
S W D +AW+ G+TGYP+VDAGMR+L A ++HNR+R+IV+SF K L
Sbjct: 291 NYRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTKDL 350
Query: 367 LLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYV 426
+L WR G +F + L D D D+ GWQ+ SG+ D R+ +P QG + DP+ EY+
Sbjct: 351 MLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAEYI 410
Query: 427 RQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486
R ++PELA +P E IH P+ + E YP PI+D RE A M+E
Sbjct: 411 RTYVPELADVPAETIHEWVALEPDERASVAPE----YPDPIVDHAARRE----AALDMFE 462
Query: 487 MEAADN 492
D
Sbjct: 463 AARGDE 468
>gi|433458983|ref|ZP_20416854.1| deoxyribodipyrimidine photolyase [Arthrobacter crystallopoietes
BAB-32]
gi|432192475|gb|ELK49337.1| deoxyribodipyrimidine photolyase [Arthrobacter crystallopoietes
BAB-32]
Length = 475
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 152/489 (31%), Positives = 228/489 (46%), Gaps = 48/489 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++VWFR DLRI DNPAL AA D + +YT + EG G +RWWL +L L
Sbjct: 4 SLVWFRDDLRIRDNPALLAATADSAAAALYTLDEESEGIRPLGAAARWWLHHALEDLRSE 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LG L+L + + L E + + V +N Y D +K++ E GI
Sbjct: 64 LDRLGIPLLLRRGPAA-EVLTEVAAELGVAAVYWNRRYGGAERQVDAEMKQRAAEAGIHA 122
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ LL+EPW I +G + F + ++ + P P +
Sbjct: 123 ESFQASLLHEPWRISTGQGTPYKVFTPFRKALSELGLRPPLGAPEPGQRFGGPLPHSDEL 182
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L + + L W+PG + ++L +FV+ L Y + R + TS LSP
Sbjct: 183 DSWQLVPQRPDWAGGLRD-AWTPGEAAGHELLEDFVDGALADYEQGRDRPAVQGTSRLSP 241
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
YL +G +S +V + + E G +V +L +G RE+ + ++ P +
Sbjct: 242 YLRWGHVSPFQVRAAVLAR-------EAERGSSAVRAYLGELGWREFCWHQLYHHPLLAK 294
Query: 306 RPLLSNLKYFPWHADLG--------------NFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ L FPW AW++GRTG PLVDAG RELWATGW+H
Sbjct: 295 QNLRPEFDAFPWQRPGSGGGDGNDGGASPSVRLLAWQRGRTGVPLVDAGQRELWATGWMH 354
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++ +SF VK L + WR G +FWDTL+DAD + WQ+++GS D R+ +
Sbjct: 355 NRVRMVSASFLVKNLGIDWRLGEHWFWDTLVDADPATNPASWQWVAGSGADAAPFFRIFN 414
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q +KFDPEG YV +W+PE + +YP PI+D+
Sbjct: 415 PLSQQAKFDPEGRYVARWVPEYGQP-------------------------DYPGPIVDVK 449
Query: 472 LGRERLTQA 480
R+ +A
Sbjct: 450 ESRQAALEA 458
>gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
Length = 500
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 242/482 (50%), Gaps = 41/482 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR+DLR+ D AL AA ++G V P+Y + Q+ G SRWWL SL L
Sbjct: 37 VLLWFRQDLRLADQAALGAAVQEGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSLDDD 96
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G+ LVL + + + +++ A +V H Y+P + ++ ++L +
Sbjct: 97 LRKKGSRLVL-RQGNCVDQIVQIAEETGARRVHALHHYEPWWRNAEKALGKRL-----DL 150
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
++G LL P + G+++ + + + + M PA + P R+ G S
Sbjct: 151 CLHDGALLLPPGAVRTGGGNSYRIYTPF-ARAVMDHMPPAEPVRAPSRIDAPGQWPKGDS 209
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++ GL + + A R W+PG + A + F+++ Y + R +S LS
Sbjct: 210 LDRWGLLPTAPDWA-AAFSRDWTPGEAGARANVAAFLDE-AADYDRARNLPSREGSSRLS 267
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S +V W + G + T FL+ + R+Y+ + P
Sbjct: 268 PHLHFGEVSPAQV----------WRQVAGAPG--NATTFLKELIWRDYAHTQIWAMPAYG 315
Query: 305 ERPLLSNLKYFPWHADLG----NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PW DL +F AW+ GRTGYP+VDAGMR+LW TGW+HNR+R+I +S
Sbjct: 316 SENARPAFDAMPWR-DLREAGVDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIAAS 374
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWDTL+DA + + WQ+++GS D + R+ +P Q KF+
Sbjct: 375 FLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFE 434
Query: 421 PEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+Y+R+W+PELA + + IH P DA P +YP ID GRER
Sbjct: 435 -AADYIRKWVPELAHLNDDVIHDPEAHDARP-----------ADYPAKCIDHREGRERAL 482
Query: 479 QA 480
A
Sbjct: 483 AA 484
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 247/485 (50%), Gaps = 47/485 (9%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSL 59
N I W RRDLR+ DN L+ A + S V +C + P R++ ++ L
Sbjct: 45 NSVIFWHRRDLRVSDNIGLSKAYQHSSKL-VGLFCLDTDILNQDNVAPARIT--YMLGCL 101
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L +S + LG +L++F+ T + + A+K V +N+ +P S RD+ + E L
Sbjct: 102 QDLRESYQQLGGQLLIFQGNPT-QIIPQVADALKVDCVFWNNDVEPYSKKRDNQVIEALQ 160
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHA-FTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
E GI Q+Y LL+ P +I + +A + + +W L+ E A+I QA G
Sbjct: 161 ERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKE--EKANI------AQALG 212
Query: 179 TIDGCS------IEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLL 226
++ S +++LG+ D LG W PG + A + L F + +
Sbjct: 213 KLESLSEEEINTVKNLGIIDLPTAKD---LGYSWDAPLILEPGETAAKEQLNYFCDSLIY 269
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFL 284
Y + R G N TS LSP FG + +R+V+Q L A E + E +E++ +
Sbjct: 270 NYQEQRNYPGINGTSTLSPAFKFGVIGIREVWQA-----TLSAYENTYSDEARENIQTWQ 324
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+ + RE+ ++ + FP P K F W + +F+AW +G+TGYP+VDA MR+L
Sbjct: 325 QEIAWREFYQHCMYFFPELATGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQL 384
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
TGW+HNR R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D
Sbjct: 385 NETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPK 444
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
L R+ +P Q K+DP+GEY+R W+PE++ + TE++ PP + G Y
Sbjct: 445 PL-RIFNPASQAQKYDPDGEYIRLWVPEISSLDTEYLVTG-KIPPLEAHSCG------YL 496
Query: 465 KPIID 469
+PI+D
Sbjct: 497 QPIVD 501
>gi|406707087|ref|YP_006757439.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
gi|406652863|gb|AFS48262.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
Length = 447
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 224/441 (50%), Gaps = 24/441 (5%)
Query: 48 GRVSRWWLKQSLSYLGQSLKS-LGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPV 106
G WWL +SL L +S K+ GA L++ + ++ L L + I + +V++N LY P
Sbjct: 26 GEAGHWWLHESLKQLQESYKARFGASLIVLEGKA-LDVLQKLIKKYQIHQVLWNRLYSPE 84
Query: 107 SLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS 166
++ RD IK+ L E G+ V+++NG LL EPWE+ + G F F YW K ++
Sbjct: 85 TIKRDTIIKKALQEQGVDVETFNGHLLNEPWEVQNNSGQYFKVFTPYWRKAFEVYQSKKE 144
Query: 167 ILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
L + + + L + +K S + W+PG A L+ +++ +
Sbjct: 145 KLEKIKSINVLSHQENLIFNFLPKKKWYQKFS-----KYWTPGEKAAQDQLSRYLKTDID 199
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
Y R + + TS LSPYL FGE+S R V + K +N SV +L
Sbjct: 200 IYKDARDRPDLDQTSKLSPYLRFGEISPRTVVLNI-------LKSKNLST--SVLTYLSE 250
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+G RE+S L + P+ + FPW + + W+ G+TG PLVDA MR+++
Sbjct: 251 IGWREFSYSLLYYSKNLSSVPINLKFQNFPWRKSVKDLDLWKSGKTGIPLVDAAMRQIYE 310
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
GW+HNR+R++V SF VK LLL W G +YF +TLLD D + GWQ+I+G D
Sbjct: 311 KGWMHNRLRMVVGSFLVKNLLLNWTLGEQYFQETLLDYDEASNAAGWQWIAGCGADASPY 370
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLN---Y 463
R+ +P +Q +FDP+ +++ Q+LP+L + + P L+ + +N Y
Sbjct: 371 FRVFNPILQSERFDPQAKFILQYLPQL-----QILQKPSSIFQPHLQEQAFQSLVNQNLY 425
Query: 464 PKPIIDLDLGRERLTQAIFKM 484
+P++DL R R +A K+
Sbjct: 426 YEPLVDLKDSRNRALEAYQKI 446
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 247/485 (50%), Gaps = 47/485 (9%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSL 59
N I W RRDLR+ DN L+ A + S V +C + P R++ ++ L
Sbjct: 45 NSVIFWHRRDLRVSDNIGLSKAYQHSSKL-VGLFCLDTDILNQDNVAPARIT--YMLGCL 101
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L +S + LG +L++F+ T + + A+K V +N+ +P S RD+ + E L
Sbjct: 102 QDLRESYQQLGGQLLIFQGNPT-QIIPQVADALKVDCVFWNNDVEPYSKKRDNQVIEALQ 160
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHA-FTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
E GI Q+Y LL+ P +I + +A + + +W L+ E A+I QA G
Sbjct: 161 ERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKE--EKANI------AQALG 212
Query: 179 TIDGCS------IEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLL 226
++ S +++LG+ D LG W PG + A + L F + +
Sbjct: 213 KLESLSEEEINTVKNLGIIDLPTAKD---LGYSWDAPLILEPGETAAKEQLNYFCDSLIY 269
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFL 284
Y + R G N TS LSP FG + +R+V+Q L A E + E +E++ +
Sbjct: 270 NYQEQRNYPGINGTSTLSPAFKFGVIGIREVWQA-----TLSAYENTYSDEARENIQTWQ 324
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+ + RE+ ++ + FP P K F W + +F+AW +G+TGYP+VDA MR+L
Sbjct: 325 QEIAWREFYQHCMYFFPELATGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQL 384
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
TGW+HNR R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D
Sbjct: 385 NETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPK 444
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
L R+ +P Q K+DP+GEY+R W+PE++ + TE++ PP + G Y
Sbjct: 445 PL-RIFNPASQAQKYDPDGEYIRLWVPEISSLDTEYLVTG-KIPPLEAHSCG------YL 496
Query: 465 KPIID 469
+PI+D
Sbjct: 497 QPIVD 501
>gi|347528151|ref|YP_004834898.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
gi|345136832|dbj|BAK66441.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
Length = 458
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 233/479 (48%), Gaps = 35/479 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+W RRDLR+ D AL AA +G V PVY + G SRWWL SL+ L
Sbjct: 5 VILWLRRDLRLGDQAALLAACAEGPVVPVYVLDDETPDHRRMGAASRWWLHGSLASLAGD 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ G+ LVL + + L + A +V H Y+P + +I L +
Sbjct: 65 LRASGSRLVLRRGRAD-EVLPALAREVGARRVHALHHYEPWWRNAERAIARVL-----DL 118
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
++G+ L+ P + G + F +W + P + P ++ + +
Sbjct: 119 VLHDGNYLHPPGLLKSGSGSPYRIFTPFWRALRETMPPPEPMARPDKIPAPSSWPASEHL 178
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+D L S + + R W PG A L F + Y R +S LSP
Sbjct: 179 DDWSLRPSSPDWATGM-ARAWQPGEQGALDRLEAFADS-AGDYDIARNLPSVEGSSRLSP 236
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+S ++W + +G+ +LR + R+Y++ + P
Sbjct: 237 HLHFGEIS----------PSLIWHRIARRDGRTEP--YLRELAWRDYAQTVILQHPRHGS 284
Query: 306 RPLLSNLKYFPWHADL----GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ FPW DL +F+AW++GRTGYP+VDAGMR+LW TGW+HNR+R+I +SF
Sbjct: 285 ANGRAQFDDFPWR-DLREAASDFEAWKRGRTGYPIVDAGMRQLWTTGWMHNRVRMIAASF 343
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
VK LL+ WR G ++FWDTL+DAD + + WQ+++G+ D R+ +P Q +KFD
Sbjct: 344 LVKHLLIDWRHGEQWFWDTLIDADYGNNSVNWQWVAGTGIDSSMFVRIMAPLGQSAKFD- 402
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+Y+R+W+PELA +P +H P + + +G YP IID RER A
Sbjct: 403 AADYIRRWVPELAGLPDGVVHDP---ESHGFRPSG------YPVRIIDHRAARERALSA 452
>gi|334142421|ref|YP_004535629.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. PP1Y]
gi|333940453|emb|CCA93811.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. PP1Y]
Length = 469
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 227/462 (49%), Gaps = 64/462 (13%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR+ D ALAAAA G V PVY + G SRWWL SL+ L +
Sbjct: 17 VIVWFRRDLRLSDQAALAAAAAQGPVLPVYVLDDETPRHRAMGSASRWWLHYSLASLDAT 76
Query: 66 LKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L+ G+ L+L K E LAAL + A ++V H Y+P + S+ ++L
Sbjct: 77 LREKGSRLILRKGKCEDVLAALAQESGA---SEVHALHHYEPWWRNAEKSVGKRL----- 128
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-----------------PAS 166
++ ++G+ L P + G + + +W + L +M PAS
Sbjct: 129 TLHLHHGNYLAPPGTVTTGSGSPYKIYTPFW-RALNERMPPPDPQRRPQNIALPDSWPAS 187
Query: 167 -ILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
L WRL+ G G+ D W PG A K L F + H
Sbjct: 188 DALDDWRLLPTQPDWAG------GMRDM------------WEPGEEGAKKRLRAFAD-HA 228
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
RY R TS LSP+LHFGE+S +V+ SV FL
Sbjct: 229 SRYEGQRNLPAVEGTSFLSPHLHFGEVSPAQVWHA------------TSSAGGSVATFLG 276
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHAD---LGNFKAWRQGRTGYPLVDAGMR 342
+G R+Y++ + FP R ++FPW + + +AW+ G TGYP+VDAGMR
Sbjct: 277 EIGWRDYAQNVIVQFPDYGSRSARDTFEHFPWRSGKEAQEDLRAWQMGMTGYPIVDAGMR 336
Query: 343 ELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPD 402
+LW TGW+HNR+R+I +SF +K LL+ W+ G ++FWDTL+DAD + + WQ+ +GS D
Sbjct: 337 QLWHTGWMHNRVRMIAASFLIKHLLIDWQEGEQWFWDTLVDADYASNAVNWQWTAGSGVD 396
Query: 403 GHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHP 444
+ R+ +P Q KFD Y+R+W+PELA +P IH P
Sbjct: 397 SNMFVRIMAPLTQSEKFD-AAAYIREWVPELADLPDAEIHDP 437
>gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
17029]
gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
ATCC 17029]
Length = 471
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 156/477 (32%), Positives = 235/477 (49%), Gaps = 22/477 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFRRDLR+ DNP LA AA G + P++ P+ E G +W L + Q+
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFAQA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ LG+ LVL + LA L ++ A V ++ L++P RD + L + GI
Sbjct: 65 LEGLGSRLVL-RRGPALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQAGIEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA--GTIDGC 183
+ G ++EP E+ +G + + +W K ++ + AS PP RL A +
Sbjct: 124 ARHAGHTIFEPREVETGQGGFYRVYTPFW-KAVKDRPVAASFPPPARLPSPAEWPVSERL 182
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ DLG + A++ + G + A + L F+ L RY R + TS L
Sbjct: 183 ASWDLG---RAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
S L +GE+S R ++ EG+ FL+ + RE+ +L ++ P
Sbjct: 240 SENLTYGEISARSLWHA--------GMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEI 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R + FPW D + + WR+G TG P VDA MREL+ TG +HNR R+I S+
Sbjct: 292 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL WR G +F D L+D D + LGWQ+++GS PD R+ +P Q KFDPE
Sbjct: 352 KHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y R++L E+AR P ++A P ++ G+ YP+P++ L GRER A
Sbjct: 412 AYRRRFLAEIARRPGPEALAFFEAVP---RSWGLRPDRCYPRPVVGLAEGRERALAA 465
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 246/488 (50%), Gaps = 35/488 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTW-------CPKEEGQFYPGRVSRWWLKQ 57
+VW RRDLR++D+ A A + +V PV+ + P+++ RV W Q
Sbjct: 8 ALVWLRRDLRLDDHAAFYHALKHSEAVLPVFVFDASILAALPRDDR-----RVDFIW--Q 60
Query: 58 SLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEK 117
S + L L LG +L L + + + + A V N Y+P + RD + ++
Sbjct: 61 SAAALKAELNQLGGDL-LIRHGLPQHEIPRLAAELGAEAVFCNRDYEPAARARDAEVAQR 119
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI--LPPWRLVQ 175
L E G++ + +++E E+ G F+ F Y + L+ ++ P + P R +
Sbjct: 120 LAEQGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLK-KLTPFHLQAYPVRRYLD 178
Query: 176 AAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
A + S+ L D S+ L G + A+ + +F + + RY R
Sbjct: 179 ALMPREPQSMPSLA--DIGFLPSD-LASLPVKAGAAGAEALFADFAGR-IERYKAQRDFP 234
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
G S LS +L FG LS+R++ W +G E +L + R++ +
Sbjct: 235 GVKGVSYLSVHLRFGTLSIRRLAAYAWH-----------DGGEGAMTWLSELIWRDFYQQ 283
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ ++ P + P+ D F AWR+GRTGYPLVDA MR+L +G++HNR+R
Sbjct: 284 VLWHRPDAAKHAFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLR 343
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ +SF VK LL+ WRWG +YF + LLD DL + GWQ+ + + D R+ +P Q
Sbjct: 344 MVAASFLVKDLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQ 403
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP+G ++R+++PELA +P + IH PW A P L +AGV LG +YP PI+D + RE
Sbjct: 404 SEKFDPDGRFIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRDYPHPIVDHAVQRE 463
Query: 476 RLTQAIFK 483
L A+FK
Sbjct: 464 -LALALFK 470
>gi|398817002|ref|ZP_10575637.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
gi|398031514|gb|EJL24900.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
Length = 484
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 238/499 (47%), Gaps = 50/499 (10%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR+ D+ AL AA G + PVY G + +++ LG +
Sbjct: 4 IVWFRRDLRLHDHAALHAAMLAGDPIIPVYIVEDSLCRSAAVGDKRLYAHFAAIAALGDA 63
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L LG L L + + L + A K++FN Y P + RD + E L G+ V
Sbjct: 64 LAQLGGRL-LIRHGNPQQVLCQLAQETGADKLLFNRDYAPEARKRDELVSEVLSSQGVVV 122
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAY---------------------WDKCLQMQMEP 164
+ +L+EP EI ++ + F Y +D+ ++ EP
Sbjct: 123 HTCKDLILHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDRPFPQPTRWNLFDRLKELASEP 182
Query: 165 ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
V+A G +G E E E+ G A K L +F+
Sbjct: 183 VPT------VEAFG-----RKRPIGTEWEMEQF-----------GERAAQKRLQQFLNGD 220
Query: 225 LLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFL 284
+ Y + R G N+TS LS L+ G LS+R V+ + Q + A+ E S+ FL
Sbjct: 221 IYTYKEKRDMPGVNATSRLSFALNTGTLSIRTVYHSV---QEVLARARG-EQVTSIEAFL 276
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+ RE+ + + + P T + L + W F W G TGYP+VDA M++L
Sbjct: 277 TELIWREFYQQVLYFHPHTTDHAYLPQFETVAWENRKDLFTRWCHGETGYPIVDAAMKQL 336
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
TGW+HNR+R+I +SF K LL+ WRWGM YF L+D D +I GWQ+ + + D
Sbjct: 337 NETGWMHNRLRMITASFLTKDLLVDWRWGMAYFAQQLVDFDEAANIGGWQWSASTGTDAQ 396
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
R+ +P QG KFDP+G +V+++LP L +P ++IH PWD P + + AG ++G +YP
Sbjct: 397 PYFRIFNPVTQGEKFDPDGAFVKKYLPVLREVPLQYIHKPWDMPEQIQEQAGCKIGFDYP 456
Query: 465 KPIIDLDLGRERLTQAIFK 483
P +D R +L A+F+
Sbjct: 457 IPCVD-HAQRRKLAMALFQ 474
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 160/487 (32%), Positives = 243/487 (49%), Gaps = 37/487 (7%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R V + P E P RV+ ++ ++ L
Sbjct: 6 LFWHRRDLRISDNLGLAAARERSPKVVGFFCLDPGILEADDVAPARVA--YMLGCVAQLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ +++G+EL++ K + + + + S + A V +N +P S RD+++ L E GI
Sbjct: 64 ERYQAVGSELLILKG-NPVEQIPQTASTLGAMAVYWNRDVEPYSRQRDNAVAAALTEKGI 122
Query: 124 SVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+++ D LL+ P ++ G +T + +W + LPP +Q A G
Sbjct: 123 EMRTKTWDQLLHAPGDVLTGAGKPYTVYGPFWRNWQNLVK-----LPPAATLQGAV---G 174
Query: 183 CSIEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
S + GL DE S LG W+ PG A L F + + Y + R
Sbjct: 175 LSDAERGLVDEIALPSAKALGFTWAAPLPLEPGERAARAQLEFFGHKAIEAYDEQRNFPA 234
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
TSLLS L FG + +R+V+Q + + EG+ +V +++ + RE+ +++
Sbjct: 235 VTGTSLLSAALKFGAVGMREVWQT---AMTAYDACNSDEGRTNVQTWMKELAWREFYQHV 291
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
F FP P K FPW D F AW +GRTGYP+VDA MR+L TGW+HNR R+
Sbjct: 292 MFFFPELAHGPYRDAWKDFPWDNDEEKFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRM 351
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF K L++ WRWG KYF L+D DL + GWQ+ + S D L R+ +P Q
Sbjct: 352 IVASFLTKDLIIDWRWGEKYFMQKLVDGDLSANNGGWQWSASSGMDPKPL-RIFNPASQA 410
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD + +Y+RQWLPE+ + T + +P ++ G +Y PI+D +
Sbjct: 411 KKFDADADYIRQWLPEIRHVDTGALVSGKLSPLDL-------EGTDYAAPIVD-----HK 458
Query: 477 LTQAIFK 483
QA+FK
Sbjct: 459 KQQAVFK 465
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 160/488 (32%), Positives = 248/488 (50%), Gaps = 36/488 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R S V V+ P P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVA--YMIGCLQCLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + G++L++ + ++ L + A+ A V +N +P++ RD S++E L E+GI
Sbjct: 64 RDYQRGGSQLLIIQ-DNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQA------ 176
V+++ +L+ P I+ + + YW K +Q + EP L L +A
Sbjct: 123 KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKAAR 182
Query: 177 -AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
AG I + +DLG S +L PG + A L F ++ + Y + R
Sbjct: 183 EAGAIALPTAKDLGFI----WSEPFIL----EPGETAASDRLQLFCDRAIYEYDEGRNFP 234
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMK-QILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TSLLSP L FG + +R LW K Q + A + E ++ + + + + RE+ +
Sbjct: 235 AIDGTSLLSPALRFGAIGIR----TLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQ 290
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
++FP FPW + +F+AW QGRTGYP+VDA MR+L TGW+HNR
Sbjct: 291 QALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRC 350
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ S S D L R+ +P
Sbjct: 351 RMIVASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKPL-RIFNPAS 409
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q K+DPE EY+RQWLPEL + T + ++ YP+PI+D + +
Sbjct: 410 QAQKYDPEAEYIRQWLPELRNLETAHL-------VTGKISSSDRQACGYPQPIVDHNR-Q 461
Query: 475 ERLTQAIF 482
++L ++I+
Sbjct: 462 QKLFKSIY 469
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 249/487 (51%), Gaps = 34/487 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R S V V+ P+ P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEILSGDDIAPVRVA--YMLGCLQCLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + G++L++ + ++ L + A+ A + +N +P+ RD S++E L E+GI
Sbjct: 64 EDYQRGGSQLLIIQ-DNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEVGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQA------ 176
V+++ +L+ P I+ + + YW K +Q + EP L L +A
Sbjct: 123 KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKAAL 182
Query: 177 -AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
AG I + +DLG S +L PG + A L F ++ + Y + R
Sbjct: 183 EAGAIALPTAKDLGFI----WSEPFIL----EPGETAASDRLEIFCDRAIYEYDEGRNFP 234
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TS+LSP L FG + +R ++Q Q + A + E + + + + + RE+ +
Sbjct: 235 AIDGTSVLSPALRFGAIGIRTLWQ---KTQEIMALTRSDEARHHIQTWQQELAWREFYQQ 291
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
++FP FPW + +F+AW QGRTGYP+VDA MR+L TGW+HNR R
Sbjct: 292 ALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCR 351
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L++ W+WG KYF TL+D DL + GWQ+ S S D L R+ +P Q
Sbjct: 352 MIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKPL-RIFNPASQ 410
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
K+DPE EY+RQWLPEL + T + ++G YP+PI+D + ++
Sbjct: 411 TQKYDPEAEYIRQWLPELRNLDTAHL-------VTGKISSGDRQACGYPQPIVDHNR-QQ 462
Query: 476 RLTQAIF 482
+L ++I+
Sbjct: 463 KLFKSIY 469
>gi|411010414|ref|ZP_11386743.1| deoxyribodipyrimidine photolyase [Aeromonas aquariorum AAK1]
Length = 473
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 237/495 (47%), Gaps = 40/495 (8%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A DG V +Y P + Q V + +L + LG+
Sbjct: 3 LVWFRNDLRLADNPALRHGCANDGPVAALYILSPTQWRQHKLAPVRQRFLLAQVDALGRD 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AAL + + T++ N + RD ++ L E G
Sbjct: 63 LAALGIPLHLLRVETFAEVPAALADLCRELGVTQLYANQTIEIDEQRRDQAVTTALAEQG 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILP-------PWR 172
I NG + P + G F F + W K L +P PW+
Sbjct: 123 IGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRVPAPRGEPLPWQ 182
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ +D ++ +L + W G + A + L +F+EQ +L Y + R
Sbjct: 183 PLAERDFVDA-ALGELAADPR------------WPVGEAEASRRLNDFLEQAVLDYGETR 229
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
TS+LSPYL G +S R+ L +Q L + ++ + +L + RE+
Sbjct: 230 DFPAIAGTSVLSPYLAAGIISPRQCVAAL--QQRLGYRPQS--KAQPGFVWLNELIWREF 285
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
R+L P + RP PW D F AW +GRTGYP+VDA MR L ATGW+H
Sbjct: 286 YRHLLVLIPTLSMNRPFKPETSALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMH 345
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +
Sbjct: 346 NRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFN 405
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P QG +FDP+GE++R W+ ELA +P ++H P D L+ G +YP P++D
Sbjct: 406 PTTQGQRFDPQGEFIRTWVSELADLPAAYLHQPHD----WLRLKGRR---DYPAPMVDHA 458
Query: 472 LGRERLTQAIFKMWE 486
+ R R + +F+ E
Sbjct: 459 VARVRAIE-MFRALE 472
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 163/507 (32%), Positives = 246/507 (48%), Gaps = 55/507 (10%)
Query: 6 TIVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLR++DN L A + V V+ + P+ ++ Q P R+ +L L L
Sbjct: 4 VLFWHRRDLRLKDNIGLFQAHQKTAKVLGVFCFDPQLLKKDQVAPARIK--YLLGCLQEL 61
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
++ + +G++L++ + + A+ + AT V +N +P S RD +++ L E G
Sbjct: 62 QENYRRVGSDLLILNADP-VTAISNLAQTLNATGVFWNQDIEPYSRKRDRAVQSALEEQG 120
Query: 123 ISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPW-------- 171
I+VQ++ LL+ P +I DE +T F W K Q + P +
Sbjct: 121 ITVQTFWDQLLHSPGDILTKSDEPYKVYTPFWKNWQK--QDKATPTGEIKSLDGLTSEEH 178
Query: 172 RLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
R G I + DLG E+E +PG S A L F ++ +L Y +N
Sbjct: 179 RKADTVGVIPLPKLNDLGFSWENELPL--------TPGESAARDRLQWFCDRAILDYDQN 230
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF---EGKESVTFFLRAMG 288
R TS+LS L FG + +R+V++ EEN E ++++ + + +
Sbjct: 231 RNYPAIEGTSILSAALKFGAIGIREVWEATNQA------EENTRSDEARDNINAWRQELA 284
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
RE+ ++ + FP + P K FPW + +F+AW G TGYP+VDA MR+L TG
Sbjct: 285 WREFYQHALYFFPELAKGPYREQFKSFPWENNQDHFEAWCNGETGYPIVDAAMRQLNTTG 344
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
W+HNR R+IV+SF K L++ W+WG YF TL D DL + GWQ+ + S D L R
Sbjct: 345 WMHNRCRMIVASFLTKDLIINWQWGEAYFMQTLFDGDLAANNGGWQWSASSGMDPKPL-R 403
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL---GLNYPK 465
+ +P Q KFDP+GEY+R WLPEL + T N+L L GL Y
Sbjct: 404 IFNPASQAQKFDPDGEYIRYWLPELNSIDT----------GNLLTGNISPLEREGLGYTA 453
Query: 466 PIIDLDLGRERLTQAIFKMWEMEAADN 492
PIID + Q FK + DN
Sbjct: 454 PIID-----HKQQQRKFKQLYQQQKDN 475
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 160/488 (32%), Positives = 248/488 (50%), Gaps = 36/488 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R S V V+ P P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVA--YMIGCLQCLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + G++L++ + ++ L + A+ A V +N +P++ RD S++E L E+GI
Sbjct: 64 RDYQRGGSQLLIIQ-DNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQA------ 176
V+++ +L+ P I+ + + YW K +Q + EP L L +A
Sbjct: 123 KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKAAL 182
Query: 177 -AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
AG I + +DLG S +L PG + A L F ++ + Y + R
Sbjct: 183 EAGAIALPTAKDLGFI----WSEPFIL----EPGETAASDRLQLFCDRAIYEYDQGRNFP 234
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMK-QILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TSLLSP L FG + +R LW K Q + A + E ++ + + + + RE+ +
Sbjct: 235 AIDGTSLLSPALRFGAIGIR----TLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQ 290
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
++FP FPW + +F+AW QGRTGYP+VDA MR+L TGW+HNR
Sbjct: 291 QALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRC 350
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ S S D L R+ +P
Sbjct: 351 RMIVASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKPL-RIFNPAS 409
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q K+DPE EY+RQWLPEL + T + ++ YP+PI+D + +
Sbjct: 410 QAQKYDPEAEYIRQWLPELRNLDTAHL-------VTGKISSSDRQACGYPQPIVDHNR-Q 461
Query: 475 ERLTQAIF 482
++L ++I+
Sbjct: 462 QKLFKSIY 469
>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
Length = 473
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/477 (31%), Positives = 231/477 (48%), Gaps = 25/477 (5%)
Query: 7 IVWFRRDLRIEDNPALAAA----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
++WFR+DLR+EDN AL A + + V+ E QF P S + ++++
Sbjct: 5 VMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHL---NEKQFLPDAPSHDYFFSAVAHF 61
Query: 63 GQSLK--SLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+++K +L L+ L C + +++ FN RD IKE + +
Sbjct: 62 IEAVKKQNLTIHLLTGTLTEAFDQLFACYP--EWSQLYFNFDNRGYGRKRDLYIKELVEK 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL-VQAAGT 179
G++V S+ L++P E+ E G + F Y+ K +Q+ P + L + A
Sbjct: 120 KGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQL---PKPVYQKQALDFEKAAH 176
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ G +E +N G A K L FV++ L Y K+R
Sbjct: 177 FNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDLPSIKG 236
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FG++S+RKV WA + FL+ + R++ + F
Sbjct: 237 TSRLSPFLSFGQISIRKV----------WAACQGMPPSTGKATFLKELAWRDFYHMIYFT 286
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P L+ + W D F W+ G+TGYP++DA MR+L TGW+HNR+R+IV+
Sbjct: 287 HPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVA 346
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF K LL+ WR G YF L+D D +I GWQ+ + + D R+ +P QG KF
Sbjct: 347 SFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKF 406
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D EG Y++Q++PELA++P ++IH P+ V LG +YP PI+D + R+R
Sbjct: 407 DKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKR 463
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 160/488 (32%), Positives = 247/488 (50%), Gaps = 36/488 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R S V V+ P P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVA--YMIGCLQCLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + G++L++ + ++ L + A+ A V +N +P+ RD S++E L E+GI
Sbjct: 64 RDYQRGGSQLLIIQ-DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQA------ 176
V+++ +L+ P I+ + + YW K +Q + EP L L +A
Sbjct: 123 KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKAAR 182
Query: 177 -AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
AG I + +DLG S +L PG + A L F ++ + Y + R
Sbjct: 183 EAGAIALPTAKDLGFI----WSEPFIL----EPGETAASDRLQLFCDRAIYEYDQGRNFP 234
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMK-QILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TSLLSP L FG + +R LW K Q + A + E ++ + + + + RE+ +
Sbjct: 235 AIDGTSLLSPALRFGAIGIR----TLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQ 290
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
++FP FPW + +F+AW QGRTGYP+VDA MR+L TGW+HNR
Sbjct: 291 QALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRC 350
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ S S D L R+ +P
Sbjct: 351 RMIVASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKPL-RIFNPAS 409
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q K+DPE EY+RQWLPEL + T + ++ YP+PI+D + +
Sbjct: 410 QAQKYDPEAEYIRQWLPELRNLETAHL-------VTGKISSSDRQACGYPQPIVDHN-QQ 461
Query: 475 ERLTQAIF 482
++L ++I+
Sbjct: 462 QKLFKSIY 469
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 249/487 (51%), Gaps = 34/487 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R S V V+ P+ P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEILSGDDIAPVRVA--YMLGCLQCLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + G++L++ + ++ L + A+ A V +N +P+ RD S++E L E+GI
Sbjct: 64 EDYQRGGSQLLIIQ-DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQA------ 176
V+++ +L+ P I+ + + YW K +Q + EP L L +A
Sbjct: 123 KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKAAL 182
Query: 177 -AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
AG I + +DLG S +L PG + A L F ++ + Y + R
Sbjct: 183 EAGAIALPTAKDLGFI----WSEPFIL----EPGETAASDRLEIFCDRAIYEYDEGRNFP 234
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TS+LSP L FG + +R ++Q Q + A + E + + + + + RE+ +
Sbjct: 235 AIDGTSVLSPALRFGAIGIRTLWQ---KTQEIIALTRSDEARHHIQTWQQELAWREFYQQ 291
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
++FP FPW + +F+AW QGRTGYP+VDA MR+L TGW+HNR R
Sbjct: 292 ALYHFPALAIGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCR 351
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L++ W+WG KYF TL+D DL + GWQ+ S S D L R+ +P Q
Sbjct: 352 MIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKPL-RIFNPASQ 410
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
K+DPE EY+RQWLPEL + T + ++G YP+PI+D + ++
Sbjct: 411 TQKYDPEAEYIRQWLPELRNLDTAHL-------VTGKISSGDRQACGYPQPIVDHNR-QQ 462
Query: 476 RLTQAIF 482
+L ++I+
Sbjct: 463 KLFKSIY 469
>gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
Length = 471
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/477 (32%), Positives = 236/477 (49%), Gaps = 22/477 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFRRDLR+ DNP LA AA G + P++ P+ E G +W L + ++
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ LG+ LVL + LA L ++ A V ++ L++P RD +K L + GI
Sbjct: 65 LEGLGSRLVL-RRGPALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA--GTIDGC 183
S+ G ++EP E+ +G + + +W K ++ + AS PP RL A +
Sbjct: 124 ASHAGHTIFEPREVETGQGGFYRVYTPFW-KAVKDRPVAASSPPPARLPSPAEWPVSERL 182
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+ DLG + A++ + G + A + L F+ L RY R + TS L
Sbjct: 183 ACWDLG---RAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
S L +GE+S R ++ EG+ FL+ + RE+ +L ++ P
Sbjct: 240 SENLTYGEISARSLWHA--------GMRARAEGRAGAEKFLQEIAWREFGWHLLYHTPEI 291
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R + FPW D + + WR+G TG P VDA MREL+ TG +HNR R+I S+
Sbjct: 292 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL WR G +F D L+D D + LGWQ+++GS PD R+ +P Q KFDPE
Sbjct: 352 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y ++++ E+AR P ++A P ++ G+ YP P++ L GRER A
Sbjct: 412 AYRQRFVAEIARRPGPEALAFFEAVP---RSWGLRPDRCYPGPVVGLAEGRERALAA 465
>gi|386042915|ref|YP_005961720.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404409820|ref|YP_006695408.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
gi|345536149|gb|AEO05589.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404229646|emb|CBY51050.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
Length = 467
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 232/481 (48%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC+ +K T KV FN RD + K E
Sbjct: 60 VDKTALLQIMF------GEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ A
Sbjct: 114 QEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA--- 165
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D E+L + E + + G A+ L F++ + Y K R + T
Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+SVR ++Q L +EN E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISVRTIWQAL---------QEN-EATEGRAIFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW+ G+TG+PLVDA MR+L TGW+HNR+R++ +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++R+++ ELA +P ++IH P K G+ LG +YP PI+D +ER A
Sbjct: 396 PTGKFIREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
Length = 476
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/492 (31%), Positives = 232/492 (47%), Gaps = 40/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQF--YPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DNPAL AA + V VY C G+F P R+ ++++ L L
Sbjct: 3 ALVWFRNDLRVRDNPALYKAAEEKQGVLAVYVHCEAYVGRFPIAPARLD--FIRRHLLVL 60
Query: 63 GQSLKSLGAELVLF---KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ L L L L + E AL ++ K FN Y L RDH + + L
Sbjct: 61 VRELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLR 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ V+ + ++ P I G + F A+ K LQ M P L Q G
Sbjct: 121 AQGVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVM-------PLHL-QPLGL 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRG--------WSPGWSNADKVLTEFVEQHLLRYYKN 231
D + + ++ ++ N L G W G A L F+E L Y
Sbjct: 173 PDK-QAQPMPVKPVTQADINRLFGEHSVRDLEHLWPAGEDEACARLDSFIESGLTHYQDK 231
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R TS LSPYL G LS R+ + +L + ++E + ++ + RE
Sbjct: 232 RDFPALQGTSTLSPYLAIGSLSPRQA-----ISSVLCYTQGDWESNAGASCWISELIWRE 286
Query: 292 YSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
+ +++ +FP R + + + FPW D F W QG TG PLVDA MR+L TGW+
Sbjct: 287 FYQHVVVDFPQVCKHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGWM 346
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR+R++V+ F K L + WR G ++F + L+D D + GWQ+ + + D R+
Sbjct: 347 HNRLRMVVAMFLTKNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRVF 406
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
+P Q +FDP+G+++R W+PELA +P ++IH+P A L YP P++DL
Sbjct: 407 NPISQSERFDPQGDFIRSWIPELADVPLKYIHNP--------SADKSFSSLQYPAPMVDL 458
Query: 471 DLGRERLTQAIF 482
R+ T A+F
Sbjct: 459 AESRKS-TIALF 469
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 247/476 (51%), Gaps = 29/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N I W RRDLR+ DN L+ A + S + ++ P + P RV+ ++ L
Sbjct: 3 NIIIFWHRRDLRLSDNIGLSKAYQKSSKLVGLFCLDPNILQRDDIAPARVN--YMLGCLR 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +S + LG +L++F+ + T + E ++K V++N+ +P S RD +KE L E
Sbjct: 61 NLQESYQKLGGQLLIFQGQPT-KIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEALQE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH-AFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
GI+ ++Y LL+ P EI + + + + +W ++ + A+I + +
Sbjct: 120 KGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKE--DKANIAESIEKLDSLSD 177
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSP------GWSNADKVLTEFVEQHLLRYYKNRQ 233
+ +++++GL D LG GW G + A + L F + Y + R
Sbjct: 178 EEINTVKNIGLIDLPTAKD---LGYGWDIPLLLELGETAAKEQLHYFCNSTIYSYQEQRN 234
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LSP FG + +R+V+Q + + E +E++ + + + RE+
Sbjct: 235 FPAIDGTSKLSPAFKFGVIGIREVWQTTIEA---YENTRSDEARENIQTWQQEIAWREFY 291
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP E P + FPW + +F+AW +G+TGYP+VDA MR+L TGW+HNR
Sbjct: 292 QHCLYFFPELAEGPYREEFQDFPWDNNEDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNR 351
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D L R+ +P
Sbjct: 352 CRMIVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL-RIFNPA 410
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q K+DP+GEY+R W+PE++ + TE++ PP + G YP+PI+D
Sbjct: 411 SQAQKYDPDGEYIRLWVPEISSLDTEYLVTG-KIPPLEAHSCG------YPQPIVD 459
>gi|432863497|ref|XP_004070096.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 806
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 234/491 (47%), Gaps = 71/491 (14%)
Query: 6 TIVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPKEEG----QFYPGRVSRWWLKQSLS 60
++WFRRDLR+ DNPAL AA D V P++ W P+EE G S++WL Q+L+
Sbjct: 222 VLLWFRRDLRLCDNPALNAALEMDAPVIPIFIWSPEEEEGPGVTVAAGGASKYWLHQALA 281
Query: 61 YLGQSLKSLGAELVLFKTES----TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
+ SL +G+ L K + +L L + + A ++ N LY+P RD ++
Sbjct: 282 CICTSLNHIGSRLTFLKADGEEKCSLPTLKQLVKETGAKTLLANALYEPWLKERDDMVES 341
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
L + G+ + + L +P+ +
Sbjct: 342 TLQKEGVQCRIFPSYCLRDPYSVST----------------------------------- 366
Query: 177 AGTIDGCSIEDLGL------EDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
G +E LGL +D + A + + W A L F+ + RY K
Sbjct: 367 -----GVPLEALGLARMPRRKDGTTIDWAANIRKSWDFSEDGAHARLDNFLRDGVYRYEK 421
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+ +TS LSPYLHFG+LS R + LW + + F+ K L L
Sbjct: 422 ESGRADAPNTSSLSPYLHFGQLSPRWL---LWDAKGARCRSPKFQRK------LAWRDLA 472
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
+ L + P+ RP L+ W+ D + KAW++G+TGYPLVDA MR+LW TGW+
Sbjct: 473 YWQLTLFPDLPWESIRPPYKALR---WNTDRSHLKAWQRGKTGYPLVDAAMRQLWLTGWM 529
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
+N +R +V+SF + L LPW+ G ++F DTL+DAD+ D + WQ +G + +
Sbjct: 530 NNYMRHVVASFLIAYLHLPWQEGYRWFQDTLVDADVAIDAMMWQ--NGGMCGLDHWNFVM 587
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
P DP G YVR+W PELA +P E IH PW P ++L+ A V G +P+ I+ +
Sbjct: 588 HPVDAALTCDPYGHYVRKWCPELADLPDELIHKPWKCPASMLRRAKVVFGETFPERIV-V 646
Query: 471 DLGRERLTQAI 481
DL ER Q++
Sbjct: 647 DL-EERRNQSL 656
>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
gi|386049515|ref|YP_005967506.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404283027|ref|YP_006683924.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|405757582|ref|YP_006686858.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
gi|346423361|gb|AEO24886.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404232529|emb|CBY53932.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|404235464|emb|CBY56866.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
Length = 467
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 233/481 (48%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC+ +K T KV FN RD + K E
Sbjct: 60 VDKTALLQIMF------GEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ A
Sbjct: 114 QEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA--- 165
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D E+L + E + + G A+ L F++ + Y K R + T
Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+SVR ++Q L +EN E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISVRTIWQAL---------QEN-EATEGRAIFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G+TG+PLVDA MR+L TGW+HNR+R++ +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++R+++ ELA +P ++IH P K G+ LG +YP P+ID +ER A
Sbjct: 396 PTGKFIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLID---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|422408691|ref|ZP_16485652.1| deoxyribodipyrimidine photo-lyase, partial [Listeria monocytogenes
FSL F2-208]
gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
F2-208]
Length = 467
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 232/494 (46%), Gaps = 61/494 (12%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYNACKEDDLLLLFQVNP---AQFITGSPSHQAFFTSVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K T KV FN RD + + E
Sbjct: 60 IDKTAHLQIMF------GEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPA-----SI 167
I VQS++ L+ E+ + F Y+ K ++ ++P S+
Sbjct: 114 QKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKESL 173
Query: 168 LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
P + A T C DL + D E+++N L F++ +
Sbjct: 174 FPKYEEQFAEMT---C---DLPILDSGERAANTRLAN---------------FIKHDIAD 212
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y K R + TS LS YL GE+S+R ++Q L + E E F + +
Sbjct: 213 YDKARDFPELDKTSHLSRYLRTGEISIRTIWQAL----------QETEATEGRATFEKEL 262
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
R++ + +FP P+ N ++ W + FKAW++G TG+PLVDA MR+L T
Sbjct: 263 CWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKET 322
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R+I +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D
Sbjct: 323 GWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYF 382
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFDP GE++R+++ ELA +P ++IH P K G+ LG +YP PI
Sbjct: 383 RIFNPTTQSQKFDPTGEFIRKYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPI 442
Query: 468 IDLDLGRERLTQAI 481
+D +ER AI
Sbjct: 443 VD---HKERRKLAI 453
>gi|407804385|ref|ZP_11151209.1| DNA photolyase [Alcanivorax sp. W11-5]
gi|407021678|gb|EKE33442.1| DNA photolyase [Alcanivorax sp. W11-5]
Length = 488
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 164/508 (32%), Positives = 238/508 (46%), Gaps = 41/508 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYL 62
+VW+R DLR+ D+ ALAAA G V +Y CP E Q P R RW++ SL L
Sbjct: 3 ALVWYRNDLRVHDHQALAAAVSSGLPVRALYLLCPGQWEAHQVAPLR--RWYVLSSLREL 60
Query: 63 GQSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
GQ+L +LG L + AL + + +++ Y L RD ++ + L
Sbjct: 61 GQALAALGIVLDVIDCGDFAGVPQALADYCRRHQVSQLFCTREYPLNELRRDRAVADVLG 120
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILPPWRLVQA 176
LGI++Q ++ +L P + +G +T F Y W L P R +A
Sbjct: 121 GLGIALQGFDDSVLVPPRALKTGQGTPYTVFTPYRRRWQHYLDEHPPAPPARPRKR--EA 178
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
D S+ + S A W PG + A + L FV + L Y R
Sbjct: 179 VAFRDDNSLRKALAALDVPASLQA----HWQPGEAAARRRLQGFVREGLAGYKAQRDFPA 234
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
TSLLS L G LSV++ C M + A+E + E E ++ + R++ R +
Sbjct: 235 QAGTSLLSVALSAGTLSVQR---CYLMAREAMAREADTE--EGALVWIGELAWRDFYRQI 289
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
NFP P K+ W D F+AW +GRTGYPLVDA MR+L TGW+HNR+R
Sbjct: 290 MANFPHLAWGAPFREETKWLQWQRDEQCFQAWCEGRTGYPLVDAAMRQLNQTGWMHNRLR 349
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++ + F K L + WRWG YF LLD D + GWQ+ + + D R+ SP Q
Sbjct: 350 MVTAMFLTKHLFIDWRWGEAYFMRQLLDGDFAANNGGWQWSASTGTDAAPYFRVFSPIRQ 409
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDP+G +++Q++PEL + + +H PW AP L +YP PI+ + RE
Sbjct: 410 SERFDPDGVFIKQYVPELHGLTGKALHQPWLAP---------MLAPDYPSPIVQHEGVRE 460
Query: 476 RLTQAIFKMWEMEAADNAMDSNGTNEVV 503
R+T A A D G+ +V
Sbjct: 461 RVTAAF---------QQARDIGGSTGIV 479
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/478 (31%), Positives = 245/478 (51%), Gaps = 38/478 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI D+ LAAA S V V+ P ++ P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDHKGLAAAREKSSQVVGVFCLDPNILDQDDVAPARVT--YMIGCLQELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + +G++L++ + + + +A+ + A++A V +N +P + RD + E L E+ I
Sbjct: 64 KQYEKVGSQLLILQGQPS-SAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEVNI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHA-FTTFDAYWDK-CLQMQMEPASILPP---------WR 172
V++ LL+ P EI + + + + YW+ + + +P +
Sbjct: 123 GVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLTEKQLK 182
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ + G ID EDLG E+E +L PG A L EF ++ L Y + R
Sbjct: 183 IAKENGIIDLPLAEDLGFVWENE----LIL----EPGEEAAQNRLEEFCDRALFEYDEQR 234
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLRE 291
+ TS LS L FG +S+R V W K + + E + ++ + + + RE
Sbjct: 235 NFPANDGTSQLSAALKFGVISIRTV----WAKTVEAMENTRSDEARNNIKAWQQELAWRE 290
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ + ++FP P + K FPW + +F+AW +G+TGYP+VDA MR+L GW+H
Sbjct: 291 FYQQAMYHFPELANGPYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAMRQLNEIGWMH 350
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR R+IV++F K L++ W+WG KYF L+D DL + GWQ+ + S D L R+ +
Sbjct: 351 NRCRMIVANFLTKDLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSGMDPKPL-RIFN 409
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P Q K+DPEGEY+RQWLPEL+ + TE++ + + E +YP+PI+D
Sbjct: 410 PTTQAQKYDPEGEYIRQWLPELSSLDTEYL------VTGKISSKDRE-ACDYPEPIVD 460
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 227/469 (48%), Gaps = 11/469 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAA--RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I WFRRDLR+ DNPAL A+ DG V P++ G ++ +L L
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L++ G+ LV+ + TL + + AT V +N Y P + RD ++ L +L +
Sbjct: 64 NLRARGSRLVI-RRGRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDLNVE 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCL-QMQMEPASILPPWRLVQAAGTI 180
+++ P ++ G +T + Y W Q + E + P L A +
Sbjct: 123 TSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPAPEAV 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
++ D D S + G + G + + + Y + R L +T
Sbjct: 183 ADQTVPDHA--DLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAEPAT 240
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYL FG ++ R+ + ++L ++ S+ ++ + R++ + +++
Sbjct: 241 SRLSPYLRFGCVAPRQALRA--ALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWHY 298
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P R W D F AW++GRTGYP++DA M +L W+HNR R+IV+S
Sbjct: 299 PHVVRRSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVAS 358
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WRWG +YF L+D D + GWQ+ +G+ D R+ +P QG KFD
Sbjct: 359 FLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFD 418
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P+G YVR++LPELA++P +IH PW P + GV +G +YP PI+D
Sbjct: 419 PKGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVD 467
>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
Length = 477
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 240/481 (49%), Gaps = 39/481 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN AL A D +V VY P++ P +++ +L Q+L L
Sbjct: 6 LVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIA--FLHQNLVEL 63
Query: 63 GQSLKSLGAELVLFKTESTLAA----LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
+L G L+ T +T A LL+ AT + FNH Y+ +RD ++++
Sbjct: 64 QHALAKRGIPLIC-HTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQQS 122
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAA 177
L I +Y+ LL P + ++G + + + L Q+ M P + AA
Sbjct: 123 QHLNIL--TYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGAA 180
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
++ + L + E S + G A L +F + + Y ++R
Sbjct: 181 LAVE--NTHPLFVHQSVETSPQFIAGE------HAALAKLRQFCSERVQDYQRDRDIPAI 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYL 296
N TS LSPYL G LS R QC+ ++L + F+ +ES F +L + RE+ +L
Sbjct: 233 NGTSQLSPYLALGVLSPR---QCV--NRLLAENPQVFDSQESGGFSWLNELIWREFYSHL 287
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP +P + ++ W+ D F AW+ G+TGYP+VDA MR+L TGW+HNR+R
Sbjct: 288 LVAFPRLCRHQPFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLR 347
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF VK LL+ WR G YF L+D L + GWQ+ + + D R+ +P Q
Sbjct: 348 MIVASFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQ 407
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIH--HPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G KFDP+G ++R+WLPEL +P ++IH H W A ++ LNYP PI+D
Sbjct: 408 GKKFDPQGTFIREWLPELRDVPEKFIHEPHTW--------AESHQVSLNYPTPIVDHKQA 459
Query: 474 R 474
R
Sbjct: 460 R 460
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 248/482 (51%), Gaps = 37/482 (7%)
Query: 4 NRTIVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPK------EEGQFYPGRVSRWWLK 56
N TIVW RRDLRI DNPAL A A++G+ ++ + P+ E+ G+V ++
Sbjct: 10 NLTIVWHRRDLRIADNPALDQAIAQNGATIGIFIFDPQILESKAEDQTTGAGQVD--FML 67
Query: 57 QSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
L L + + LG++L+ F + + + + A +V FN +P + RD
Sbjct: 68 GCLQELQAAYQDLGSDLLFFHGDPA-KTIRDIAQTLNAARVFFNQDVEPFARERDRQACA 126
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
L E+G+ V+S+ L+ P I G + + +W + + +P + P +LV
Sbjct: 127 ALAEIGVEVKSFLDLALHAPDAISTNSGTPYKVYTPFWRSWI-AKAKPQPLPSPAKLV-- 183
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWS-------PGWSNADKVLTEFVEQHLLRYY 229
+DG + E +E ++ + L G+S G A++ L +F + + + Y
Sbjct: 184 --GLDGRTSESRSIEAKA-IALPRLADLGFSCDQDIPTAGIKAAEQCLQDFCDTNKIFNY 240
Query: 230 KNRQKLGGN-STSLLSPYLHFGELSVRKVFQC-LWMKQILWAKEENFEGKESVTFFLRAM 287
+ + N TS+LSP+L FG + +R+V+Q + + + + EE K + + + +
Sbjct: 241 QQERNFPANPGTSMLSPHLRFGTIGIRQVWQATVAATEHIRSDEE----KAGLQTWRQEL 296
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ +++ F+FP S ++ F W D F AW +G TGYP+VDA MR+L T
Sbjct: 297 AWREFYQHVLFHFPDLATGAYRSQMQVFEWDDDEAKFAAWCKGETGYPIVDAAMRQLNQT 356
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR R+IV+SF K L++ W+WG +YF + L+D D + GWQ+ + S D L
Sbjct: 357 GWMHNRCRMIVASFLTKDLIINWQWGERYFMEKLVDGDQAANNGGWQWSASSGMDPKPL- 415
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q K+D +GEY+R+W+PELA + T + + P K G YP PI
Sbjct: 416 RIFNPASQARKYDKDGEYIRRWIPELAGLTTAELLSG-NITPQQCKERG------YPMPI 468
Query: 468 ID 469
+D
Sbjct: 469 VD 470
>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
F6854]
gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|386046246|ref|YP_005964578.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
1/2a str. F6854]
gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|345533237|gb|AEO02678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
Length = 467
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 232/481 (48%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC+ +K T KV FN RD + K E
Sbjct: 60 VDKTALLQIMF------GEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ A
Sbjct: 114 QEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA--- 165
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D E+L + E + + G A+ L F++ + Y K R + T
Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+SVR ++Q L +EN E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISVRTIWQAL---------QEN-EATEGRAIFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW+ G+TG+PLVDA MR+L TGW+HNR+R++ +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++R+++ ELA +P ++IH P K G+ LG +YP P+ID +ER A
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLID---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|406658770|ref|ZP_11066910.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
gi|405578985|gb|EKB53099.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
Length = 470
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 231/481 (48%), Gaps = 39/481 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++WFRRDLRI+DN AL A G + V+ PK+ VS+ QSL + +
Sbjct: 3 AVIWFRRDLRIQDNKALKHAIDSGGPLLAVFHLNPKQLRDV--ATVSQSAFIQSLQHFRR 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA-----TKVVFNHLYDPVSLVRDHSIKEKLV 119
+L G L L C ++ T V FN+ RD
Sbjct: 61 TLDEKGIFL-----HVIFGELQYCFEHLQQALPDWTDVYFNYDDAGFGRKRDQEAAHFFR 115
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP----PWRLVQ 175
E GI++ +Y L+ E+ ++ + F Y+ K LQ+ E ++ W V
Sbjct: 116 EKGIAIHAYQDHYLHGSQEVINQASLPYKVFTPYYKKWLQLPKETPIVIDYSQVDWLFVP 175
Query: 176 AAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
A T+D + L K PG A + L F+E+ L Y +R
Sbjct: 176 NAKTVD-SKLNTLFRPLPYHK-----------PGEEAALEQLHLFIEEGLEAYDVSRDYP 223
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TS LS YL GE+++R V+ + +K + +GK F++ + RE+
Sbjct: 224 EYDGTSRLSVYLRTGEINIRTVYAAI-------SKAKASKGK---AVFIKELVWREFYHM 273
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ N P + PL + W D F+ W+ G TGYP+VDA MR+L TGW+HNR+R
Sbjct: 274 IYVNHPHQKQEPLQAQFAAIEWENDQALFEQWKAGTTGYPMVDAAMRQLSQTGWMHNRLR 333
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF VK LL+ WRWG +YF + L+D D +I GWQ+ + + D R+ +P Q
Sbjct: 334 MIVASFLVKDLLIDWRWGEEYFQEALMDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQ 393
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDP+G +++ ++P+L +P +W++ PW P ++ G + +YP PI+ D+ R+
Sbjct: 394 AKRFDPKGHFIKTYVPQLEALPLKWLYEPWKLPLDLQDDLGFKPERDYPLPIVSHDIQRK 453
Query: 476 R 476
+
Sbjct: 454 K 454
>gi|444362622|ref|ZP_21163126.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia BC7]
gi|443596438|gb|ELT64943.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia BC7]
Length = 387
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 8/363 (2%)
Query: 111 DHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP 170
D ++K L G++V+S NG LL EPWE+ G + F AYW + + A + P
Sbjct: 10 DAALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRAVAAPLPAP 69
Query: 171 WRLV----QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
++V A +++ L L + + L +P + A L F+ L
Sbjct: 70 GQIVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLA 129
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
Y R + +TS LSP+L FG +S R+V W A FL
Sbjct: 130 GYADARDRPDRPATSRLSPFLRFGNVSPRQV----WHAVQGAASAGGAAYAADADKFLSE 185
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+G RE+S L ++FP + PW D +AW++GRTGYPLVDAG+RELW
Sbjct: 186 LGWREFSYTLLYHFPTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWT 245
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TGW+HNR+R++V+SF +K LL+ WR G +F DTL+DAD + WQ+++G D
Sbjct: 246 TGWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPY 305
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
R+ +P QG KFDP+G YVR+W+PELA + IH PW+A P L+AAG+ LG++YP P
Sbjct: 306 FRIFNPVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAP 365
Query: 467 IID 469
+++
Sbjct: 366 LVE 368
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 159/478 (33%), Positives = 242/478 (50%), Gaps = 40/478 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLRI DN LAAA R S V +C + P R++ ++ L L
Sbjct: 6 LFWHRRDLRISDNIGLAAA-RQKSSRVVGVFCLDRNLLKRDDIAPARIT--YMIGCLQEL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
Q LG++L++ + + A+ A+K V FN +P + RD +KE L E G
Sbjct: 63 QQKYLQLGSQLLIVQGDPN-QAITALAEALKVQAVFFNLDIEPYAKQRDEKVKEALKEKG 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWR--------L 173
I+V+++ LL P +I + G+ +T + +W Q + PA L + +
Sbjct: 122 IAVETFWDQLLEAPGKIVTQSGNLYTVYSPFWRNWSQQSKQSPAQDLENVKGLTDQEIAI 181
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
+ AGTI+ + +DLG N LL +PG + A + L EF ++ + Y + R
Sbjct: 182 AKKAGTIELPTAKDLGF-----IWDNPLL---LAPGETAAQERLAEFCDRAIYEYKEQRN 233
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFLRAMGLRE 291
+ TS LS L FG + +R V+Q + A E + E +S+ + + + RE
Sbjct: 234 FPAIDGTSRLSAALKFGAIGIRTVWQA-----TIEAGENSRSDEASDSIQAWQQELAWRE 288
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ ++ + FP E N K F W + F+AW +G+TGYP+VDA M++L TGW+H
Sbjct: 289 FYQHCLYFFPELAEGAYRKNFKNFFWENNEEYFQAWCEGKTGYPIVDAAMKQLNETGWMH 348
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR R+IV+SF K LL+ + G KYF L D DL + GWQ+ + S D L R+ +
Sbjct: 349 NRCRMIVASFLTKDLLINPQLGEKYFMQKLYDGDLAANNGGWQWSASSGMDPKPL-RIFN 407
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P Q KFDP+ EY+RQWLPEL+ + TE++ P + G YP+PI+D
Sbjct: 408 PASQSQKFDPQAEYIRQWLPELSSIDTEYLVTG-KIPDSERDRCG------YPRPIVD 458
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 240/479 (50%), Gaps = 41/479 (8%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
I W RRDLRI DN LA A RD V V+ P P RV +L L L
Sbjct: 3 IFWHRRDLRINDNIGLAKAYTRDKKVIGVFCLDPNILNRDDIAPARVK--YLLGCLEALK 60
Query: 64 QSLKSLGAELVLFKT--ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+ LG++L++F E + +L E +KA V +N +P S RD ++ + L E
Sbjct: 61 TKYQKLGSDLLIFHNTPEEIIPSLAE---KLKADAVYWNLDVEPFSRHRDKNVSQALKEK 117
Query: 122 GISVQSYNGDLLYEPWEIYDERGH-AFTTFDAYWDKCLQMQMEPASILPPWRL------- 173
I Q++ LL+ P EI + A+T + +W + + Q + + + P +L
Sbjct: 118 SIETQTFWDQLLHSPGEILSKSNQTAYTVYTPFW-RNWEAQPKSSPVDSPQQLTGLNDLE 176
Query: 174 ---VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
V+ GTI+ S+ DLG +++ SPG +A + L F + + Y
Sbjct: 177 KTIVKELGTINIPSLNDLGFPWDADLPL--------SPGEESALERLEYFCQSLIYNYEC 228
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+R + TS LS L FG +SVR +++ Q + E +E++ + + + R
Sbjct: 229 DRNYPFLDGTSQLSAALKFGAISVRTIWK---KSQAELTNCNSDEARENIIAWQKEIAWR 285
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
E+ ++ + FP E K FPW D F+AW +G+TGYP+VDA MR+L TGW+
Sbjct: 286 EFYQHCLYFFPQLAEGAYREQFKQFPWENDEKKFQAWCEGKTGYPIVDAAMRQLNETGWM 345
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR R+IV+SF K L++ WRWG KYF L D DL + GWQ+ + S D L R+
Sbjct: 346 HNRCRMIVASFLTKDLIIDWRWGEKYFMQKLYDGDLAANNGGWQWSASSGMDPKPL-RIF 404
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q KFDPE EY+R WLPE+ + T+ + +P L+A+ YP PI+D
Sbjct: 405 NPASQAQKFDPEAEYIRTWLPEIRHLDTKDLVTGKISP---LEASSC----GYPLPIVD 456
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 243/475 (51%), Gaps = 34/475 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W R+DLRI DN LA A + S V ++ + E+ P R++ +L L L
Sbjct: 6 LFWHRKDLRISDNIGLAKARQKSSKVVGIFCFDSNILEQNDIAPVRIA--YLIGCLQELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q+ + LG+ L+ + E + + + + + A V +N +P S RD + + L E GI
Sbjct: 64 QTYQKLGSNLLFIQGEPS-HIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-------CLQMQMEPASILPPWRLVQA 176
Q+Y LL+ P EI + G + + +W + +E L L QA
Sbjct: 123 KTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLESLEGLTQTELQQA 182
Query: 177 --AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
ID ++++LG + L+ SPG + A + L F + + Y + R
Sbjct: 183 KNVNIIDLPTVQELGY-----RWDYPLI---LSPGETAAAERLDYFCDAAINEYQEQRNF 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TS LSP L FG + +R V+Q +K + ++ + E +ES+ + + + RE+ +
Sbjct: 235 PAIEGTSQLSPALKFGVIGIRTVWQAT-LKAMENSRSD--EVRESIVTWQKELAWREFYQ 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ + FP E P + + FPW + F+AW +G+TGYP+VDA MR+L TGW+HNR
Sbjct: 292 HCLYFFPELAEGPYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRC 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF TL+D DL + GWQ+ + S D L R+ +P
Sbjct: 352 RMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKPL-RIFNPAS 410
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDP+ +Y+RQWLPEL + TE + +P + L YP+PI++
Sbjct: 411 QAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLDCLSCG-------YPQPIVN 458
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 247/484 (51%), Gaps = 26/484 (5%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAA----ARDGSVFPVYTWCPK--EEGQFYPGRVSRWW 54
+ G +VW RRDLRI+DNPAL+ A G V ++ + P ++G +V +
Sbjct: 15 LSGQIALVWHRRDLRIDDNPALSEAIAQVGDQGKVLGLFIFDPDILDDGVTEGSKVD--F 72
Query: 55 LKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSI 114
+ L L + + LG++L LF + +L AI + + FN +P ++ RD
Sbjct: 73 MLGCLRELQTNYRRLGSDL-LFMYGEPITSLCSLAKAINTSHLFFNQDVEPFAIKRDREA 131
Query: 115 KEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV 174
+ L E+G+ VQS+ L P I + G + + +W + Q + +P + P +L
Sbjct: 132 TQALQEIGVKVQSFVDIGLIAPDAIATQAGEPYKVYTPFW-RNWQSKPKPQPLDAPQKLT 190
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH-LLRYYKNRQ 233
A + + + L E + ++ L G S A +L F + + +LRY R
Sbjct: 191 GLA-SYENLPVIPLPSLRELKFINDITLPES---GESAALALLEAFCDGNGILRYQTERD 246
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L FG + +R+V++ Q L +E+ G +T + + + RE+
Sbjct: 247 FPAHAGTSTLSPHLRFGTVGIRRVWEKAIAAQQLVRSDEDLAG---ITIWQQELAWREFY 303
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+++ F+FP ++ FPW D F+AW G TGYP+VDA MR+L TGW+HNR
Sbjct: 304 QHVLFHFPALATGAYRPQMQSFPWDDDPEKFEAWCAGLTGYPIVDAAMRQLNQTGWMHNR 363
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G +YF LLD DL + GWQ+ + S D L R+ +P
Sbjct: 364 CRMIVASFLTKDLIINWQLGERYFMQKLLDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 422
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q K+DPEGEY+ +WLPEL + T + + PP+ + NYP PI+D ++
Sbjct: 423 SQARKYDPEGEYILRWLPELQGLTTAELLS-GNIPPHQCQRR------NYPLPIVDHNIQ 475
Query: 474 RERL 477
+++
Sbjct: 476 QQKF 479
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 234/475 (49%), Gaps = 34/475 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA + V V+ P E P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNIGLAAACQKSQKVIGVFCLDPDILERDDIAPARVT--YMMGCLQELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q G++L++ + + + A VV+N +P + RD ++++ L E GI
Sbjct: 64 QRYAEAGSQLLILHQNPS-QGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEKGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWR--------LV 174
+V+S+ LL+ P EI G+ + + +W Q + PA L +V
Sbjct: 123 AVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQDVV 182
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ G ++ + ++LG N+L+ PG A + L EF ++ + Y R
Sbjct: 183 KKVGVMELPTAKELGF-----TWDNSLM---LEPGEKAAKQRLEEFCDRAIDDYQHQRNL 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TS LS L FG + +R V+Q Q + + E ++ + + + + RE+ +
Sbjct: 235 PAIDGTSRLSAALKFGAIGIRTVWQA---TQTAIERSRSDETRDGIQTWQQELAWREFYQ 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ + FP P + FPW + F+AW +GRTGYP+VDA MR+L TGW+HNR
Sbjct: 292 HALYFFPELASGPYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAAMRQLNQTGWMHNRC 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG YF L D DL + GWQ+ + S D L R+ +P
Sbjct: 352 RMIVASFLTKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSGMDPKPL-RIFNPAS 410
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q K+DP+GEY+RQWLPEL+ + T+ D + + YP+PI+D
Sbjct: 411 QAQKYDPDGEYIRQWLPELSSLDTK------DLVTGKISSDECS-SCGYPEPIVD 458
>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
Length = 486
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 158/495 (31%), Positives = 245/495 (49%), Gaps = 40/495 (8%)
Query: 6 TIVWFRRDLRIEDN--PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL- 62
I WFRRDLR+ D+ AA A G+V PV+ ++ + G V + +L+ L
Sbjct: 3 VICWFRRDLRLTDHRALYAAAEASAGAVIPVFIL---DDTILHDGYVGAALIAVTLAMLE 59
Query: 63 --GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L+ G+ L++ + LA L +S +A+ V +N Y P ++ RD ++K L E
Sbjct: 60 ALDHDLQQRGSRLIV-RHGQPLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHWLRE 118
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHA-FTTFDAY---WDKCLQMQME---PAS---ILPP 170
G+ S++ +L EP + + + + +Y W + Q E PA + PP
Sbjct: 119 QGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFVAPP 178
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH----LL 226
L ++ S+ DLG E + G + A + L +F ++ +L
Sbjct: 179 SDL----ASLPIPSLADLGFELQQTIPQV---------GETIAQQRLAQFFDRRQKLSVL 225
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
+Y K R+ TS LS L G +S+R QCL L + N E ++ V +L+
Sbjct: 226 KYTKAREVPAEAGTSQLSVDLRMGTISIR---QCLKQAVDLLTEPLNAEQRQGVDTWLKE 282
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+ R+Y L ++ P+ L W D F AW+QG+TGYP+VDAG R+L
Sbjct: 283 LAWRDYYTQLIYHNPYMLNGSLDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQ 342
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSL-PDGHE 405
W+HNR+R+I +SF +K LL+ WRWG +YF L D D + GWQ+ +GS P
Sbjct: 343 MAWMHNRVRMISASFLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQP 402
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q K DP+G+Y+R+++PELA +P +IH PW PP V G +G +YP
Sbjct: 403 YFRIFNPIAQSKKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPA 462
Query: 466 PIIDLDLGRERLTQA 480
P+++ RER A
Sbjct: 463 PLVEHSFARERALAA 477
>gi|404412670|ref|YP_006698257.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
gi|404238369|emb|CBY59770.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
Length = 467
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 231/481 (48%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F + C+ +K T KV FN RD + K E
Sbjct: 60 VDKTALLQIMF------GEPVGCLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ A
Sbjct: 114 QEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA--- 165
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D E+L + E + + G A+ L F++ + Y K R + T
Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+SVR ++Q L +EN E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISVRTIWQAL---------QEN-EATEGRAIFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW+ G+TG+PLVDA MR+L TGW+HNR+R++ +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++R+++ ELA +P ++IH P K G+ LG NYP P+ID +ER A
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKNYPFPLID---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|425735042|ref|ZP_18853358.1| deoxyribodipyrimidine photo-lyase [Brevibacterium casei S18]
gi|425480486|gb|EKU47652.1| deoxyribodipyrimidine photo-lyase [Brevibacterium casei S18]
Length = 497
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 232/459 (50%), Gaps = 42/459 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP---GRVSRWWLKQSLSYL 62
T++WFR DLR+ D+ AL+AA DG V ++ ++E P G +RWW+ +SL+ L
Sbjct: 10 TLLWFRDDLRVSDHGALSAARADGDVVAIWVREVRDEESRGPRPLGAAARWWVHESLTVL 69
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ L SLG L L + + + A V ++ Y P S D + + L E G
Sbjct: 70 ERELDSLGIPL-LVAAGRAAEIIPAAAADLGAGTVRWSRRYAPASRALDEVVTDALGENG 128
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAF-TTFDAYWDKCLQMQMEPASILPPWRLVQA--AGT 179
I+V++ G LL EPW++ A+ F +W+ ++ + +PP + + + A
Sbjct: 129 IAVEASPGALLVEPWQVEPSSASAYYKVFTPFWNAAREVPVASPLPIPPAQTLDSDTAAR 188
Query: 180 IDG---------CSIEDLGL--------EDESEKSSNA--------LLGRGWSPGWSNAD 214
I+ +I+DL L D S + S + W+PG A+
Sbjct: 189 IEQVRESDSHLVATIDDLALLSPAGPAGGDSSTEGSRTSPFPWWKDTIAGHWTPGCVTAE 248
Query: 215 KVLTEFVEQHLLRYYKNRQ-KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEEN 273
+ + + + Y ++R + TS LSP L FGE+S R++ + + A +
Sbjct: 249 EEVDDL-GARVDGYAEDRDIPADRDGTSRLSPRLRFGEVSPRQLLAAVTALTDVGASDRE 307
Query: 274 FEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTG 333
++R + RE++ +L F+ P RP+ FP+ D AW+QGRTG
Sbjct: 308 A--------WVRQLYWREFAWHLTFHVPDLDRRPMRPEFAEFPYEDDPEALAAWQQGRTG 359
Query: 334 YPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGW 393
LVDAGMR+LW TGW+HNR+R++ +S K LLLPW+ G ++FWDTL+DAD + + W
Sbjct: 360 IALVDAGMRQLWQTGWMHNRVRMVTASLLTKNLLLPWQSGEQWFWDTLVDADEANNPVSW 419
Query: 394 QYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPE 432
Q+++G D R+ +PE Q ++FDPE YV +WL E
Sbjct: 420 QWVAGCGADASPFFRVFNPERQRARFDPERVYVTRWLKE 458
>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
Length = 473
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 158/484 (32%), Positives = 235/484 (48%), Gaps = 42/484 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++W+RRDLR+ D+PAL+AAA G V PV+ K++ G +W L + L S
Sbjct: 8 LLWYRRDLRLSDHPALSAAANAGRPVIPVFI---KDKSVDALGAAPKWRLGLGIGALADS 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ + + L+L + ++ L L I A V ++ LYDP S+ RD IKE L GI
Sbjct: 65 LEGVSSRLILREGDA-LEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIKETLCNDGIEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA----SILPPWRLVQAAGTID 181
+S+ G +++EPW + + G + + +W+ +EP S LP + +D
Sbjct: 124 KSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPESWPDSDALD 183
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSP-------GWSNADKVLTEFVEQHLLRYYKNRQK 234
G DLG A + RG G A L F+ + Y + R
Sbjct: 184 GW---DLG----------AAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVADYKQTRDI 230
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
G + TS LS L GE+S + + A+ +GK+ FL+ + RE++
Sbjct: 231 PGTDGTSNLSENLSLGEISPHQCWHA--------AQRALHDGKQGAETFLKELVWREFAY 282
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+L + P FPW+ D KAW+QGRTG P VDA MREL+ TG +HN
Sbjct: 283 HLMHHTPRMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHN 342
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R R+IV+S+ K L+ WR G K+F L+D D + +GWQ+ +GS PD R+ +P
Sbjct: 343 RGRMIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNP 402
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
E Q KFD +Y +W+ E P + +DA P + + +YP+ II LD
Sbjct: 403 ETQLDKFDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSADD---DYPEKIIALDE 459
Query: 473 GRER 476
GRER
Sbjct: 460 GRER 463
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 240/473 (50%), Gaps = 30/473 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
++W RRDLR+ D+ ALA A R + V +C + P RV+ +L L L
Sbjct: 11 LLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVA--YLLGCLQSL 67
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ LG+EL++F+ + + L + + + A V + +P + RD ++ + L E G
Sbjct: 68 QDHYQRLGSELLVFQADP-VQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 126
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+++ + L++ P E+ + G +T + +W Q+ S +P + +Q +
Sbjct: 127 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNW--SQLPKTSPVPTPKDLQG---LTP 181
Query: 183 CSIEDLGLEDESEKSSNALLGRGW------SPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
E L + A LG W +PG A++ L FV L Y +NR
Sbjct: 182 AEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPA 241
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L FG +S R ++Q W + + E + S+ + + + RE+ ++
Sbjct: 242 LDGTSQLSAALKFGVISPRTLWQTTLEA---WEQSRSEEARASIETWQQELAWREFYQHC 298
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++FP + P S + FPW + +F+AW +GRTGYP++DA M +L TGW+HNR R+
Sbjct: 299 LYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRM 358
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L+L W+WG YF TL D DL + GWQ+ + S D L R+ +P Q
Sbjct: 359 IVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPL-RIFNPHTQA 417
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
KFDPEGEY+R WLP+LAR T D L G +NYP+PI+D
Sbjct: 418 QKFDPEGEYIRTWLPQLARFDTG------DLLTGKL-TPGSRRSVNYPEPIVD 463
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 243/487 (49%), Gaps = 29/487 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+IVW RRDLR++DNPALA AA + ++ + P G ++ L L
Sbjct: 5 SIVWHRRDLRLQDNPALAKAAVIPNSETVGIFIFDPDILKSPETGGGKVDFMLGCLKELQ 64
Query: 64 QSLKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
QS + LG+EL+ F + LA L + +K ++ FN +P ++ RD ++ ++L +
Sbjct: 65 QSYRELGSELLCFYGNPKEVLAKLAQ---VLKPQRLFFNQDVEPSAIKRDQAVIQELSAI 121
Query: 122 GISVQSYNGDLLYEPWEIYDER-GHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI V+ + L+ P I + G + + +W + Q +P+ + P +L+
Sbjct: 122 GIEVKGFLDIALHAPQAIATKSTGEPYKVYSPFWKNWI-TQPKPSPLPKPQKLL-GLKNC 179
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVE-QHLLRYYKNRQKLGGNS 239
DG L E S N + + G A K+LTEF + Q L Y K+R +
Sbjct: 180 DGLDAIPLPSLAELGFSHNQTIP---ASGEEIAQKLLTEFCDSQKLYNYKKDRDFPAIDG 236
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQI-------LWAKEENFEGKESVTFFLRAMGLREY 292
TS LSP+L FG + +R + I + N + E + + + + RE+
Sbjct: 237 TSNLSPHLRFGTIGIRDCWAATVAVMIDAEADITSEQDQRNAQKLEGIQTWRQELAWREF 296
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+++ F+FP + ++ F W + F+AW GRTGYP+VDA MR+L TGW+HN
Sbjct: 297 YQHVLFHFPQLSQSAYRPQMQRFAWDQNHEYFQAWSNGRTGYPIVDAAMRQLNQTGWMHN 356
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R R+IV+SF K L+L W+WG YF L+D DL + GWQ+ + S D L R+ +P
Sbjct: 357 RCRMIVASFLTKDLILNWQWGELYFMQKLIDGDLAANNGGWQWSASSGMDTQPL-RIFNP 415
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
Q KFDPEG Y+R+WLPEL + T + + + K+ NYP PI+D +
Sbjct: 416 SSQALKFDPEGTYIRRWLPELVHLTTAELLSGNISNYQLQKS-------NYPAPIVDHAI 468
Query: 473 GRERLTQ 479
+ + +
Sbjct: 469 QQRKFKE 475
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 242/475 (50%), Gaps = 34/475 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W R+DLRI DN LA A ++ S V ++ + E P R++ +L L L
Sbjct: 6 LFWHRKDLRISDNVGLAKARQESSKVVGIFCFDSNILERDDIAPARIA--YLLGCLQELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q+ + LG+ L+ + E + + + + + A V +N +P S RD + + L E GI
Sbjct: 64 QTYQKLGSNLLFIQGEPS-HIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-------CLQMQMEPASILPPWRLVQA 176
Q+Y LL+ P EI + G + + +W + +E L L QA
Sbjct: 123 KTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGLTQTELEQA 182
Query: 177 --AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
ID ++++LG + L+ SPG + A + L F + + Y + R
Sbjct: 183 KTVKIIDLPTVKELGY-----RWDYPLI---LSPGETAAAERLDYFCDAAINEYQEQRNF 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TS LSP L FG + +R V+Q +K + ++ + E +ES+ + + + RE+ +
Sbjct: 235 PAIEGTSQLSPALKFGVIGIRTVWQAT-LKAMENSRSD--EVRESIVTWQKELAWREFYQ 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ + FP E P + + FPW + F+AW G+TGYP+VDA MR+L TGW+HNR
Sbjct: 292 HCLYFFPELAEGPYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWMHNRC 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF TL+D DL + GWQ+ + S D L R+ +P
Sbjct: 352 RMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKPL-RIFNPAS 410
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDP+ +Y+RQWLPEL + TE + +P + L YP+PI++
Sbjct: 411 QAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLDCLSCG-------YPQPIVN 458
>gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
aromaticivorans DSM 12444]
gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
aromaticivorans DSM 12444]
Length = 454
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 167/481 (34%), Positives = 233/481 (48%), Gaps = 37/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFRRDLR+ D AL AAA +G V PVY G SRWWL SL+ L S
Sbjct: 5 VIVWFRRDLRLADQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHHSLAELDAS 64
Query: 66 LKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L+ LG+ L+L K LAA+ +A V + L R+ EK V I
Sbjct: 65 LRKLGSRLILRRGKCHEELAAVRR-----EAGARVVHALQHYEPWWRN---AEKAVAKTI 116
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ + G+ L + G + + +W L+ + P RL A
Sbjct: 117 RLVLHEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPERLEAPAVWPTSD 176
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
+++D L + + W+PG + A++ L +F ++ + RY + R TS L
Sbjct: 177 ALDDWKLLPTAPDWAGGFR-ETWTPGENGAEERLQDFADR-VARYGETRNLPSIEGTSRL 234
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+LHFGE+S +W + N G SV FL +G R+Y++ + FP
Sbjct: 235 SPHLHFGEIS----------PATIWHRVVNAGG--SVDVFLGELGWRDYAQNVIVQFPDY 282
Query: 304 HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
R W D +AW+QGRTGYP+VDAGMRELW TGW+HNR+R+I +SF V
Sbjct: 283 GSRNAREAYDRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIAASFLV 342
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++FWDTL+DAD + + WQ+ +G+ D + R+ +P Q KFD G
Sbjct: 343 KHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDAAG 402
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483
Y+RQW+PELA + IH P PP YP I+ R R A +
Sbjct: 403 -YIRQWVPELAHLSDRDIHDP-AVPPR-----------GYPAKIVSHSEARARALAAHDR 449
Query: 484 M 484
M
Sbjct: 450 M 450
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 240/473 (50%), Gaps = 30/473 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
++W RRDLR+ D+ ALA A R + V +C + P RV+ +L L L
Sbjct: 20 LLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVA--YLLGCLQSL 76
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ LG+EL++F+ + + L + + + A V + +P + RD ++ + L E G
Sbjct: 77 QDHYQRLGSELLVFQADP-VQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+++ + L++ P E+ + G +T + +W Q+ S +P + +Q +
Sbjct: 136 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNW--SQLPKTSPVPTPKDLQG---LTP 190
Query: 183 CSIEDLGLEDESEKSSNALLGRGW------SPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
E L + A LG W +PG A++ L FV L Y +NR
Sbjct: 191 AEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPA 250
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L FG +S R ++Q W + + E + S+ + + + RE+ ++
Sbjct: 251 LDGTSQLSAALKFGVISPRTLWQTTLEA---WEQSRSEEARASIETWQQELAWREFYQHC 307
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++FP + P S + FPW + +F+AW +GRTGYP++DA M +L TGW+HNR R+
Sbjct: 308 LYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRM 367
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L+L W+WG YF TL D DL + GWQ+ + S D L R+ +P Q
Sbjct: 368 IVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPL-RIFNPHTQA 426
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
KFDPEGEY+R WLP+LAR T D L G +NYP+PI+D
Sbjct: 427 QKFDPEGEYIRTWLPQLARFDTG------DLLTGKL-TPGSRRSVNYPEPIVD 472
>gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 143
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/143 (74%), Positives = 127/143 (88%)
Query: 334 YPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGW 393
YPLVDAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGW
Sbjct: 1 YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60
Query: 394 QYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLK 453
QYI+G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHHPW+AP +VL+
Sbjct: 61 QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120
Query: 454 AAGVELGLNYPKPIIDLDLGRER 476
AAG+ELG NYP+PI+ LD + R
Sbjct: 121 AAGIELGSNYPRPIVGLDEAKAR 143
>gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
Length = 464
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 213/437 (48%), Gaps = 13/437 (2%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
++WFR DLR DNPAL++A G V V+ + G G ++WWL L L +L
Sbjct: 10 LMWFRDDLRTADNPALSSALAAGPVIAVFILDQQSPGIRPLGGAAKWWLHHGLKSLRAAL 69
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ LG LVL K + + + E A V +N Y D K L LG +
Sbjct: 70 EDLGIPLVLRKGPAD-SIMTELARQTNAQAVHWNRRYGQPERAVDTRAKTALRGLGREAR 128
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
SY G LL+EPWE+ ++G + F +++ + P P + +A I
Sbjct: 129 SYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRPPLPAPLGQDTFSAAGIPNGLEL 188
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
+ + A L W PG + A L +E Y ++ + + TS LSP
Sbjct: 189 EDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPEHHDRPDLDGTSALSPA 248
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHER 306
L +G L +++ L EN + T R + R++ +L ++ P +R
Sbjct: 249 LRWGHLGAHEMWDALGR-----LAAENPKAGAGATAMRRQLAWRDFCWHLYYHHPQLPDR 303
Query: 307 PLLSNLKYFPW------HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
L ++ +F W + W++GRTG+ LVDAGM++LW TGW+HNR+R++ +S
Sbjct: 304 NLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTGWMHNRVRMVAAS 363
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
VK L + W+ G ++FWDTL+DAD+ + WQ+++GS D R+ +PE+Q KFD
Sbjct: 364 LLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFRVFNPELQAKKFD 423
Query: 421 PEGEYVRQWLPELARMP 437
P+G YV Q+ P LA P
Sbjct: 424 PQGSYVSQFAP-LAAQP 439
>gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
Length = 467
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 234/493 (47%), Gaps = 59/493 (11%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A+++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVSDNKALYHASKEDDLILLFQVNP---AQFITGSPSHQAFFASVAHFQQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++F +EC+ +K KV FN RD + ++ E
Sbjct: 60 LAKTARLQIMF------GDPMECLQQLKEAVPTWNKVFFNRDETGYGASRDAAAQQFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPASI----L 168
I V +++ L+ E+ + F Y+ K L++ ++P +I L
Sbjct: 114 RQIEVHAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEMKEMPLKVTLKPENIRKESL 173
Query: 169 PPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRY 228
P Q A + DL + D E+++NA L F+++ L Y
Sbjct: 174 FPKYEEQFAEIV-----HDLPVSDAGEQAANARLA---------------SFIKEDLTDY 213
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG 288
K R + TS LS YL GE+S+R ++Q L + E E F + +
Sbjct: 214 DKARDFPELDKTSHLSRYLRTGEISIRTIWQAL----------QQTEATEGRATFEKELC 263
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
R++ + +FP P+ N +Y W FK W++G+TG+PLVDA MR+L TG
Sbjct: 264 WRDFYNMIYVSFPDQKNEPIQENYRYIEWENSRAFFKCWQEGQTGFPLVDAAMRQLKETG 323
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
W+HNR+R+I +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D R
Sbjct: 324 WMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFR 383
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
+ +P Q KFDP G+++R+++ ELA +P ++IH P G+ +G +YP PI+
Sbjct: 384 IFNPTTQSEKFDPAGKFIRKYVKELAHIPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIV 443
Query: 469 DLDLGRERLTQAI 481
D +ER AI
Sbjct: 444 D---HKERRKLAI 453
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 240/473 (50%), Gaps = 30/473 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
++W RRDLR+ D+ ALA A R + V +C + P RV+ +L L L
Sbjct: 14 LLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVA--YLLGCLQSL 70
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ LG+EL++F+ + + L + + + A V + +P + RD ++ + L E G
Sbjct: 71 QDHYQRLGSELLVFQADP-VQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 129
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+++ + L++ P E+ + G +T + +W Q+ S +P + +Q +
Sbjct: 130 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNW--SQLPKTSPVPTPKDLQG---LTP 184
Query: 183 CSIEDLGLEDESEKSSNALLGRGW------SPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
E L + A LG W +PG A++ L FV L Y +NR
Sbjct: 185 AEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPA 244
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L FG +S R ++Q W + + E + S+ + + + RE+ ++
Sbjct: 245 LDGTSQLSAALKFGVISPRTLWQTTLEA---WEQSRSEEARASIETWQQELAWREFYQHC 301
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++FP + P S + FPW + +F+AW +GRTGYP++DA M +L TGW+HNR R+
Sbjct: 302 LYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRM 361
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L+L W+WG YF TL D DL + GWQ+ + S D L R+ +P Q
Sbjct: 362 IVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPL-RIFNPHTQA 420
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
KFDPEGEY+R WLP+LAR T D L G +NYP+PI+D
Sbjct: 421 QKFDPEGEYIRTWLPQLARFDTG------DLLTGKL-TPGSRRSVNYPEPIVD 466
>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
Length = 467
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 233/485 (48%), Gaps = 43/485 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P+ QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEEDLILLFQVNPE---QFIKGSPSHQAFFASVAHFQQE 59
Query: 66 L-KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L K+ +++ + L L E I KV FN RD + + + I+
Sbjct: 60 LNKNTHLQIMFGEPIELLKQLKEKIPTW--DKVFFNRDETGYGASRDEAARAFFADKEIT 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPASILPPWRLVQA 176
V SY+ L+ E+ + F Y+ K L++ ++P I
Sbjct: 118 VHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRKESLFPNY 177
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
I+DL D EK++N L FV++ L Y K R
Sbjct: 178 EEQFREL-IQDLPAFDSGEKAANTRLAN---------------FVKEDLADYDKARDVPA 221
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL GE+S+R V+Q L KEE EG+ + F + + R++ +
Sbjct: 222 LDKTSHLSRYLRTGEISIRTVWQAL-------QKEEATEGRAT---FEKELCWRDFYNMI 271
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+FP P+ N ++ W + FK W+ G+TG+PLVDA MR+L TGW+HNR+R+
Sbjct: 272 YVSFPKQKNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRM 331
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q
Sbjct: 332 ITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQS 391
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDP+G ++R+++ EL +P ++IH P K G+ LG +YP PIID +ER
Sbjct: 392 EKFDPDGTFIRKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIID---HKER 448
Query: 477 LTQAI 481
AI
Sbjct: 449 RKLAI 453
>gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
odontolyticus F0309]
gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
odontolyticus F0309]
Length = 475
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 223/453 (49%), Gaps = 38/453 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAA--ARDGSVFPVYTWCPKE-------EGQFYPGRVSRWWLK 56
T++W R DLR+ D+PAL AA A DG V ++ + G G +RWW
Sbjct: 3 TLIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYH 62
Query: 57 QSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
+SL L L LG LV + ++ + + A++ T V + Y P + D +IK+
Sbjct: 63 RSLQQLAPRLADLGIPLVFTRGDAA-NVMRRVVDALQPTVVHWTRRYAPAACRLDAAIKQ 121
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
+L V S+ G LL EPW + G + F + + + S+LP +
Sbjct: 122 ELTSR-TEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPL--TSLLPEPSPIGE 178
Query: 177 AGTIDGC-----------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
G D ++ED+GL DE L + W PG A + L
Sbjct: 179 RGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAI--DSW 236
Query: 226 LRYYKNRQKLGG--NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
L Y R+ L G STS +SP L GELS R Q + A + E + +
Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPR---------QAVAAARTSTASGEDIVAW 287
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
R + RE+S +L + + P+ FP++ D +AWRQGRTG LVDAGMR+
Sbjct: 288 TRQLYWREFSWHLLHHREHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQ 347
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
LW TGW+HNR+R++ +S K +L PW+ G ++FW+TL+DAD + + WQ+++G D
Sbjct: 348 LWQTGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADA 407
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPE-LAR 435
R+ +P++Q ++FDP YVR+W+PE LAR
Sbjct: 408 APYFRIFNPDLQRTRFDPRSRYVRRWIPEGLAR 440
>gi|423197809|ref|ZP_17184392.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
gi|404630927|gb|EKB27571.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
Length = 473
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 160/491 (32%), Positives = 239/491 (48%), Gaps = 32/491 (6%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A D V ++ P + Q V + +L + LG+
Sbjct: 3 LVWFRNDLRLADNPALRHGCANDEPVAALFIISPTQWRQHKLAPVRQRFLLAQVDALGRE 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AAL + T++ N + L RD ++ L E G
Sbjct: 63 LAALGIPLHLLRVETFAEVPAALAGLCRELGVTQLYANQAIEIDELRRDLAVTTALAEQG 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I +NG + P + G F F + L+ E + + A G
Sbjct: 123 IGCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFV------IHRAPAPRG 176
Query: 183 CSIEDLGLEDESEKS-SNALLGR-----GWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
E L + +E+ +A+LG W G + A + L +F+EQ +L Y + R
Sbjct: 177 ---EPLPWQPLAERDFVDAVLGELAADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPA 233
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
TS+LSPYL G +S R+ L +Q L + ++ + +L + RE+ R+L
Sbjct: 234 IAGTSVLSPYLAAGIISPRQCVAAL--QQRLGYRPQS--KAQPGFVWLNELIWREFYRHL 289
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
P + RP PW D F AW +GRTGYP+VDA MR L ATGW+HNR+R
Sbjct: 290 LVLIPTLSMNRPFKPETSALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLR 349
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +P Q
Sbjct: 350 MIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQ 409
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G +FDP+GE++R W+ ELA +P ++H P D L+ G +YP P++D + R
Sbjct: 410 GQRFDPQGEFIRIWVSELADLPAAYLHQPHD----WLRLKGRR---DYPAPMVDHAVARV 462
Query: 476 RLTQAIFKMWE 486
R + +F+ E
Sbjct: 463 RAIE-MFRALE 472
>gi|339503748|ref|YP_004691168.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
gi|338757741|gb|AEI94205.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
Length = 472
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 250/487 (51%), Gaps = 28/487 (5%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M + +VWFRRDLR+ D+PAL AA + G+ V PV+ + E G +W L +
Sbjct: 1 MSTSPVLVWFRRDLRLSDHPALNAAVKSGNPVIPVFIHDDQVETL---GAAPKWRLGLGI 57
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L ++L+ L + L+L + + L L + A V + LYDP ++ RD +K L
Sbjct: 58 DHLSETLEGLNSRLILRRGPA-LETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALK 116
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ GI +S+ G L++EPW + + G + + +W+ ++ A + P ++
Sbjct: 117 QDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVD-APLSAPAKIPAPDAW 175
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
++ D + ++ + A++ G + A L+ F+++ + RY R + +
Sbjct: 176 PSSEALSDWNMGAAMDRGA-AVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDG 234
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS L GE+S + + L A++E G E+ FL+ + RE++ +L +
Sbjct: 235 TSGLSENLALGEISPHQCWHA-----GLRARQEGKPGAET---FLKELVWREFAYHLMHH 286
Query: 300 FPFTHERPLLSNLK----YFPWHADLGN--FKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
P R L N K FPW+ D W+QGRTG VDA MREL+ TG +HNR
Sbjct: 287 TP----RILTDNWKEGWDSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNR 342
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+S+ K LL W+ G+K+F L+D D + +GWQ+ +GS PD R+ +P
Sbjct: 343 GRMIVASYLTKHLLSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPV 402
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q KFD + +YV++W+ + R P+E +DA P +A G+ YP P++ D G
Sbjct: 403 TQLDKFDKDRQYVKRWIAQGRRAPSETALSFYDAIP---RAWGLSGDQEYPAPVVAADEG 459
Query: 474 RERLTQA 480
R+R +A
Sbjct: 460 RKRALEA 466
>gi|423099697|ref|ZP_17087404.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
gi|370793782|gb|EHN61607.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
Length = 467
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 231/489 (47%), Gaps = 51/489 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P+ QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEEDLILLFQVNPE---QFIKGSPSHQAFFASVAHFQQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++F +E + +K KV FN RD + + +
Sbjct: 60 LNRNSHLQIMF------GEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFFAD 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPASILPPWR 172
I+V SY+ L+ E+ + F Y+ K L++ ++P I
Sbjct: 114 KEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRKESL 173
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
I+DL D EK++N L FV++ L Y K R
Sbjct: 174 FPNYEEQFREL-IQDLPAFDSGEKAANTRLAN---------------FVKEDLADYDKAR 217
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ TS LS YL GE+S+R V+Q L KEE EG+ + F + + R++
Sbjct: 218 DVPALDKTSHLSRYLRTGEISIRTVWQAL-------QKEEATEGRAT---FEKELCWRDF 267
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+ +FP P+ N ++ W + FK W+ G+TG+PLVDA MR+L TGW+HN
Sbjct: 268 YNMIYVSFPKQKNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHN 327
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R+I +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P
Sbjct: 328 RLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNP 387
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
Q KFDP+G ++R+++ EL +P ++IH P K G+ LG +YP PIID
Sbjct: 388 TTQSEKFDPDGTFIRKYVKELQDLPNKFIHQPEKMSETEQKEHGLILGKDYPFPIID--- 444
Query: 473 GRERLTQAI 481
+ER AI
Sbjct: 445 HKERRKLAI 453
>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 473
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/493 (32%), Positives = 238/493 (48%), Gaps = 36/493 (7%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR DLR+ DNPAL A A D V ++ P + Q + + +L + LG+
Sbjct: 3 LIWFRNDLRLADNPALRHACAGDEPVAALFILSPSQWRQHKLAPIRQRFLLAQVDVLGRE 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AAL E + T++ N + L RD ++ L E
Sbjct: 63 LAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAALAEQT 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASIL--PPWRLVQAAGTI 180
+ NG + P + G F F + L+ E ++ PP
Sbjct: 123 VGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRPP---------- 172
Query: 181 DGCSIEDLGLEDESEKS-SNALLGR-----GWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
E L + +E+ +A LG W G + A + L +F+EQ +L Y + R
Sbjct: 173 -APRGEPLPWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQAVLDYGETRDF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TS+LSPYL G +S R+ L +Q L + ++ + +L + RE+ R
Sbjct: 232 PAIAGTSVLSPYLAAGIISPRQCVAAL--QQRLGYRPQS--KAQPGFVWLNELIWREFYR 287
Query: 295 YLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L P + RP PW D F AW +GRTGYP+VDA MR L ATGW+HNR
Sbjct: 288 HLLVQIPTLSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +P
Sbjct: 348 LRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPT 407
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE++R W+ ELA +P ++H P D L+ G +YP P++D +
Sbjct: 408 TQGQRFDPQGEFIRTWVSELADLPAAYLHQPHD----WLRLKGRH---DYPAPMVDHAVA 460
Query: 474 RERLTQAIFKMWE 486
R R + +F+ E
Sbjct: 461 RVRAIE-MFRALE 472
>gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
Length = 467
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 234/494 (47%), Gaps = 61/494 (12%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K T KV FN RD + + E
Sbjct: 60 VDKTAHLQIMF------GEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPA-----SI 167
I VQ+++ L+ E+ + F Y+ K +M ++P S+
Sbjct: 114 QKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKMTLKPENIWKESL 173
Query: 168 LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
P + A T C DL + D E+++N L F++ +
Sbjct: 174 FPKYEEQFAEMT---C---DLPILDSGERAANTRLAN---------------FIKHDIAD 212
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y K R + TS LS YL GE+SVR ++Q L +EN E E F + +
Sbjct: 213 YDKARDFPELDKTSHLSRYLRTGEISVRTIWQAL---------QEN-EATEGRAIFEKEL 262
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
R++ + +FP P+ N ++ W + FKAW+ G+TG+PLVDA MR+L T
Sbjct: 263 CWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKET 322
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R++ +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D
Sbjct: 323 GWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYF 382
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFDP G+++R+++ ELA +P ++IH P K G+ LG +YP P+
Sbjct: 383 RIFNPTTQSQKFDPTGKFIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPL 442
Query: 468 IDLDLGRERLTQAI 481
ID +ER AI
Sbjct: 443 ID---HKERRKLAI 453
>gi|260906395|ref|ZP_05914717.1| putative deoxyribodipyrimidine photolyase [Brevibacterium linens
BL2]
Length = 494
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/451 (32%), Positives = 215/451 (47%), Gaps = 37/451 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP---GRVSRWWLKQSLSYL 62
T+VWFR DLR+ D+ AL AA DG V V+ ++ P G SRWW +SL+ L
Sbjct: 9 TLVWFRDDLRVSDHAALTAARADGRVIAVWIREARDSQGLGPRPLGGASRWWAHESLAIL 68
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
Q L LG L LF A + + ++ V ++ Y P S D IK L E G
Sbjct: 69 HQELSDLGIPL-LFAAGEAAAIIPQLTGSLGVGAVRWSRRYAPASRALDSQIKTVLHEQG 127
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM-------EPASILPPWRLVQ 175
++V S+ G LL EPW + G + F +W ++ EP S + LV+
Sbjct: 128 LAVHSHTGSLLVEPWTAAPQGGDHYKVFTPFWKAVSGREVGDVLPTPEPQSPIDR-SLVE 186
Query: 176 AAGTIDGCSIEDLGLEDESEKSSNA-------------LLGRGWSPGWSNADKVLTEFVE 222
+A + D + + + + W PG A L +
Sbjct: 187 SARDCTAVTDLDGLGLLDGTGTGSGHFAAVHGPRWWQDTIACHWLPGTRAAADQLDDLAV 246
Query: 223 QHLLRYYKNRQKL--GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV 280
+ Y + + + NSTS LSP L FGELS R++ A+ +
Sbjct: 247 G--IDGYSSTRDVPSDANSTSRLSPRLRFGELSPRQLLHA--------AQTTRSVTPDDR 296
Query: 281 TFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAG 340
++R + RE+S +L +++P P+ + FP+ D WR G TGYPL+DAG
Sbjct: 297 AAWVRQLYWREFSWHLTYHYPDIDYTPIRREFRNFPYEDDDEALAHWRSGATGYPLIDAG 356
Query: 341 MRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSL 400
M +LW TGW+HNR+R++ +SF K LL W G ++FWD L+DAD + + WQ+++GS
Sbjct: 357 MAQLWETGWMHNRVRMVTASFLTKNLLQHWWCGEQWFWDALVDADEANNPVSWQWVAGSG 416
Query: 401 PDGHELERLDSPEIQGSKFDPEGEYVRQWLP 431
D R+ +PE Q +FDP+G YV WLP
Sbjct: 417 ADAAPYFRVFNPERQRERFDPDGAYVDDWLP 447
>gi|7648568|gb|AAF65584.1|AF139916_5 hypothetical DNA photolyase [Brevibacterium linens]
Length = 487
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 218/453 (48%), Gaps = 35/453 (7%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYP---GRVSRWWLKQS 58
G + T+VWFR DLR+ D+ AL AA DG V V+ ++E P G RWW +S
Sbjct: 5 GEDLTLVWFRDDLRVADHEALTAARADGRVIAVWIRETRDEEGLGPRPLGGACRWWAHES 64
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L+ L + L LG L LF +++ S++ T V + Y S D IK L
Sbjct: 65 LTVLHEELSDLGIPL-LFAAGRAEKIIVQLASSLGVTAVRWTRRYASASRALDGQIKTVL 123
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM-------EPASILPPW 171
+ G +V S+ G LL EPW + + F +W + + S L
Sbjct: 124 NDQGFTVHSHTGALLVEPWTAAPQSSDHYKVFTPFWKAVAGRDVGDVLPKPQAQSPLSQT 183
Query: 172 RLVQAAGTIDGCSIEDLGLEDESEKSSNA------------LLGRGWSPGWSNADKVLTE 219
L +A ++ LGL D +E + + WSPG A+ L +
Sbjct: 184 LLSRAHECPAVMELDGLGLLDGTETGAGEAAAASGPRWWQDTIAGHWSPGLRAAEDQLDD 243
Query: 220 FVEQHLLRYYKNRQKLGGN--STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK 277
++ Y + + + STS LSP L GELS R++ Q A+ + +
Sbjct: 244 L--SAIIDGYTTSKDVPSDAASTSRLSPRLRHGELSPRQLLQA--------ARTTSSLTQ 293
Query: 278 ESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLV 337
+ ++R + RE+S +L +++P P+ FP+ D WR G TGYPL+
Sbjct: 294 DDRAAWIRQLYWREFSWHLTYHYPHIDSAPIRPEFHNFPYEDDDDALTHWRAGTTGYPLI 353
Query: 338 DAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYIS 397
DAGM +LW TGW+HNR+R++ +SF K LL W +G ++FWDTL+DAD + + WQ+++
Sbjct: 354 DAGMAQLWQTGWMHNRVRMVTASFLTKNLLQHWWFGEQWFWDTLVDADEANNPVSWQWVA 413
Query: 398 GSLPDGHELERLDSPEIQGSKFDPEGEYVRQWL 430
GS D R+ +PE Q +FDP+ Y+ WL
Sbjct: 414 GSGADAAPYFRVFNPERQRERFDPDDAYIEDWL 446
>gi|422808697|ref|ZP_16857108.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
gi|378752311|gb|EHY62896.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 467
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 228/481 (47%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K T KV FN RD + E
Sbjct: 60 IDKTAHLQIMF------GEPVECFKQLKDTLPSWDKVYFNRDETGYGAERDEVAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQS++ L+ E+ + F Y+ K + E P+++ I
Sbjct: 114 QKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKTENI 168
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
EDL + E + + G A+ L F++ + Y K R + T
Sbjct: 169 ---WKEDLFPKYEEQFAEMTCDLPILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+S+R ++Q L + E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISIRTIWQAL----------QETEATEGRATFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G TG+PLVDA MR+L TGW+HNR+R+I +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQAQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++R+++ ELA +P ++IH P V K G+ LG +YP P++D +ER A
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum]
Length = 482
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/499 (31%), Positives = 230/499 (46%), Gaps = 78/499 (15%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++WFR DLR+ DN AL AA G V ++ E G +RWW +QSL+ L Q
Sbjct: 23 TLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNALAQD 79
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G L L +T + L L + +S ++ V +N Y D ++K+ L + GI V
Sbjct: 80 LSFYGVPL-LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDQGIEV 138
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTF----DAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
S+ G LL EPWE+ G + F A W+ E V +
Sbjct: 139 HSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVK-----NNVTVPSHLT 193
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G +L + + + L + +PG NA + L +F+E HL Y + R L ++TS
Sbjct: 194 GPEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLE-HLQDYPQARDSLARSATS 252
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS +L FGE+S+ +V WA+ + E FL+ + R+++ + + P
Sbjct: 253 KLSAHLRFGEISIHRV----------WAETAAIDS-EGTELFLKELLWRDFAWHRLYALP 301
Query: 302 FTHERPLLSNLKYFPW-------------------------HADLGNFKAWRQGRTGYPL 336
+ + F W H DL AWR G+TG PL
Sbjct: 302 HMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLA---AWRAGKTGIPL 358
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI 396
VDAGMRELWATG +HNR+R++V+SF K L + WR G ++FW+TL+DAD + WQ+
Sbjct: 359 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 418
Query: 397 SGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456
+GS D R+ +P Q KFDP+ Y+R+W+PE
Sbjct: 419 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYGTP-------------------- 458
Query: 457 VELGLNYPKPIIDLDLGRE 475
+YP PI+DL R+
Sbjct: 459 -----SYPDPIVDLKESRQ 472
>gi|386052851|ref|YP_005970409.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
gi|346645502|gb|AEO38127.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
Length = 467
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 229/481 (47%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F + C+ +K T KV FN RD + K E
Sbjct: 60 VDKTALLQIMF------GEPVGCLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ A
Sbjct: 114 QEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA--- 165
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D E+L + E + + G A+ L F++ + Y K R + T
Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDFPILDSGEKTANTRLANFIKHDIADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+S+R ++Q L + E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISIRTIWQAL----------QETEATEGRATFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW+ G+TG+PLVDA MR+L TGW+HNR+R++ +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++R+++ ELA +P ++IH P K G+ LG +YP P+ID +ER A
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLID---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC
13032]
gi|385142786|emb|CCH23825.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum K051]
Length = 482
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 156/499 (31%), Positives = 231/499 (46%), Gaps = 78/499 (15%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++WFR DLR+ DN AL AA G V ++ E G +RWW +QSL+ L Q
Sbjct: 23 TLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNALAQD 79
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G L L +T + L L + +S ++ V +N Y D ++K+ L + GI V
Sbjct: 80 LSFYGVPL-LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDKGIEV 138
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTF----DAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
S+ G LL EPWE+ G + F A W+ E V +
Sbjct: 139 HSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVK-----NNVPVPSHLT 193
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G +L + + + + L + +PG NA + L +F+E HL Y + R L ++TS
Sbjct: 194 GPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLE-HLQDYPQARDSLARSATS 252
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS +L FGE+S+ +V WA+ + E FL+ + R+++ + + P
Sbjct: 253 KLSAHLRFGEISIHRV----------WAETAAIDS-EGTELFLKELLWRDFAWHRLYALP 301
Query: 302 FTHERPLLSNLKYFPW-------------------------HADLGNFKAWRQGRTGYPL 336
+ + F W H DL AWR G+TG PL
Sbjct: 302 HMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLA---AWRAGKTGIPL 358
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI 396
VDAGMRELWATG +HNR+R++V+SF K L + WR G ++FW+TL+DAD + WQ+
Sbjct: 359 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 418
Query: 397 SGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456
+GS D R+ +P Q KFDP+ Y+R+W+PE
Sbjct: 419 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYGTP-------------------- 458
Query: 457 VELGLNYPKPIIDLDLGRE 475
+YP PI+DL R+
Sbjct: 459 -----SYPDPIVDLKESRQ 472
>gi|417969890|ref|ZP_12610826.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum S9114]
gi|344045994|gb|EGV41663.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum S9114]
Length = 468
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 156/499 (31%), Positives = 230/499 (46%), Gaps = 78/499 (15%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++WFR DLR+ DN AL AA G V ++ E G +RWW +QSL+ L Q
Sbjct: 9 TLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNALAQD 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G L L +T + L L + +S ++ V +N Y D ++K+ L + GI V
Sbjct: 66 LSFYGVPL-LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDQGIEV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTF----DAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
S+ G LL EPWE+ G + F A W+ E V +
Sbjct: 125 HSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVK-----NNVPVPSHLT 179
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G +L + + + L + +PG NA + L +F+E HL Y + R L ++TS
Sbjct: 180 GPEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLE-HLQDYPQARDSLARSATS 238
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS +L FGE+S+ +V WA+ + E FL+ + R+++ + + P
Sbjct: 239 KLSAHLRFGEISIHRV----------WAETAAIDS-EGTELFLKELLWRDFAWHRLYALP 287
Query: 302 FTHERPLLSNLKYFPW-------------------------HADLGNFKAWRQGRTGYPL 336
+ + F W H DL AWR G+TG PL
Sbjct: 288 HMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLLPTKADQFHEDLA---AWRAGKTGIPL 344
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI 396
VDAGMRELWATG +HNR+R++V+SF K L + WR G ++FW+TL+DAD + WQ+
Sbjct: 345 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLIDADPASNAFNWQWA 404
Query: 397 SGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456
+GS D R+ +P Q KFDP+ Y+R+W+PE
Sbjct: 405 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYGTP-------------------- 444
Query: 457 VELGLNYPKPIIDLDLGRE 475
+YP PI+DL R+
Sbjct: 445 -----SYPDPIVDLKESRQ 458
>gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R]
gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 482
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 156/499 (31%), Positives = 230/499 (46%), Gaps = 78/499 (15%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++WFR DLR+ DN AL AA G V ++ E G +RWW +QSL+ L Q
Sbjct: 23 TLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNALAQD 79
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G L L +T + L L + +S ++ V +N Y D ++K+ L + GI V
Sbjct: 80 LSFYGVPL-LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDQGIEV 138
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTF----DAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
S+ G LL EPWE+ G + F A W+ E V +
Sbjct: 139 HSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVK-----NNVTVPSHLT 193
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G +L + + + L + +PG NA + L +F+E HL Y + R L ++TS
Sbjct: 194 GPEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLE-HLQDYPQARDSLARSATS 252
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS +L FGE+S+ +V WA+ + E FL+ + R+++ + + P
Sbjct: 253 KLSAHLRFGEISIHRV----------WAETAAIDS-EGTELFLKELLWRDFAWHRLYALP 301
Query: 302 FTHERPLLSNLKYFPW-------------------------HADLGNFKAWRQGRTGYPL 336
+ + F W H DL AWR G+TG PL
Sbjct: 302 HMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLA---AWRAGKTGIPL 358
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI 396
VDAGMRELWATG +HNR+R++V+SF K L + WR G ++FW+TL+DAD + WQ+
Sbjct: 359 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 418
Query: 397 SGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456
+GS D R+ +P Q KFDP+ Y+R+W+PE
Sbjct: 419 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYGTP-------------------- 458
Query: 457 VELGLNYPKPIIDLDLGRE 475
+YP PI+DL R+
Sbjct: 459 -----SYPDPIVDLKESRQ 472
>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|386007316|ref|YP_005925594.1| phr [Listeria monocytogenes L99]
gi|386025906|ref|YP_005946682.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
gi|336022487|gb|AEH91624.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
Length = 467
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 232/494 (46%), Gaps = 61/494 (12%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K T KV FN RD + + E
Sbjct: 60 IDKTAHVQIMF------GEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPA-----SI 167
I VQS++ L+ E+ + F Y+ K ++ ++P S+
Sbjct: 114 QKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKESL 173
Query: 168 LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
P + A T C DL + D E+++N L F++ +
Sbjct: 174 FPKYEEQFAEMT---C---DLPILDSGERAANTRLAN---------------FIKHDIAD 212
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y K R + TS LS YL GE+S+R V+Q L + + E F + +
Sbjct: 213 YDKARDFPELDKTSHLSRYLRTGEISIRTVWQAL----------QETKATEGRATFEKEL 262
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
R++ + +FP P+ N ++ W + FKAW++G+TG+PLVDA MR+L T
Sbjct: 263 CWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKET 322
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R+I +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D
Sbjct: 323 GWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYF 382
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFDP +++R+++ ELA +P ++IH P K G+ LG +YP P+
Sbjct: 383 RIFNPTTQSQKFDPTAKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPL 442
Query: 468 IDLDLGRERLTQAI 481
ID +ER AI
Sbjct: 443 ID---HKERRKLAI 453
>gi|333899133|ref|YP_004473006.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
gi|333114398|gb|AEF20912.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
Length = 483
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 236/484 (48%), Gaps = 23/484 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQF--YPGRVSRWWLKQSLSYLGQ 64
++WFR DLR+ DN ALAAA + G V+ P + Q P +V +WL+ +L L +
Sbjct: 4 LMWFRTDLRVTDNSALAAAMQAGPTVAVFLLSPGQWQQHDDAPCKVD-FWLR-NLVELSR 61
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
LK L L++ + + AA + ++A+ V N Y RD ++ L EL
Sbjct: 62 ELKRLNVPLLIREADQWSAAPKVIGTLAQELQASAVHVNEEYGVNESRRDEAVSAALDEL 121
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ--MQMEPASILPPWRLVQAAGT 179
G++ S+ LL++P + G F + + C Q P + PP +
Sbjct: 122 GVNFHSHLDRLLFKPGSVLTRTGTYFKVYSQFRGVCYQRLHTALPKLVAPPKAQAKLEMA 181
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
D + G + S+ +A W G A + L F ++ + Y+ NR
Sbjct: 182 ADPIPEQVAGFDTPSQALRDA-----WPAGEDAARERLQRFADEWIEDYHDNRDFPIRPG 236
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE-GKESVTFFLRAMGLREYSRYLCF 298
TS LS YL G LS R QCL L A FE G + ++ + RE+ ++
Sbjct: 237 TSQLSAYLAAGVLSPR---QCL--HAALNANGGEFENGNQGAVTWINELIWREFYAHILV 291
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+P + R + PW + +AW++GRTG P++DA MR+L TGW+HNR+R++
Sbjct: 292 GYPHVSMARAFRPETEALPWRNAAKDLQAWQEGRTGIPIIDAAMRQLLETGWMHNRLRMV 351
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 352 VAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPISQSQ 411
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
+FDP+G ++RQWLPELA + + IH P +A+ G++YPKPI+DL R+R
Sbjct: 412 RFDPDGRFIRQWLPELASLSDKTIHDPHAGSKG--QASLFGGGVDYPKPIVDLRASRQRA 469
Query: 478 TQAI 481
A
Sbjct: 470 LDAF 473
>gi|220905687|ref|YP_002480998.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
Length = 475
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 223/444 (50%), Gaps = 27/444 (6%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R V V+ P E P RV+ ++ SL +L
Sbjct: 6 LFWHRRDLRIADNVGLAAARQRTAKVVGVFCLDPNLLERDDVAPARVA--YMIGSLQHLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q G++L++ + T+A + + +A++A V +N +P S RD +++ L +GI
Sbjct: 64 QQYVQSGSQLLILHQQPTIA-IPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETVGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-------ASILPPWRLVQA 176
VQ++ LL+ P I G A+T F +W + EP A+ L P A
Sbjct: 123 EVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQPKEPPVPSLATATGLTPTEQQAA 182
Query: 177 --AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
G I + +DLG ++ PG + A + L +F ++ + Y + R
Sbjct: 183 DQVGAIALPTAKDLGFIWDTPLPLE--------PGETAAQERLEQFCQRAIYAYQQERNF 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TS LS L FG L +R V+ Q + E ++S+ + + + RE+ +
Sbjct: 235 PATTGTSQLSAALKFGVLGIRTVWAT---TQSALESSRSQEAEDSIQTWQQELAWREFYQ 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ + FP E K FPW F+AW +GRTGYP+VDA MR++ GW+HNR
Sbjct: 292 HALYWFPALAEGAYRQPFKTFPWQNRPDYFQAWCEGRTGYPIVDAAMRQMNTIGWMHNRC 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K LL+ RWG KYF L+D DL + GWQ+ + S D L R+ +P
Sbjct: 352 RMIVASFLTKDLLIDPRWGEKYFMQKLVDGDLAANNGGWQWSASSGMDPKPL-RIFNPAS 410
Query: 415 QGSKFDPEGEYVRQWLPELARMPT 438
Q KFDPE +Y+R+WLPEL + T
Sbjct: 411 QSQKFDPEADYIREWLPELRSVET 434
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 251/483 (51%), Gaps = 34/483 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEE----GQFYPGRVSRWWLKQSLSYL 62
+ W RRDLR+ DN LAAA ++ +V V +C + P RV ++ L L
Sbjct: 6 LFWHRRDLRLTDNLGLAAA-KEQTVKVVGVFCLDRDILTRDDIAPARVK--YMMGCLQEL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALL-ECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
QS +G++L++ T+ T + ++ + S + A V +N +P + RD + L +
Sbjct: 63 SQSYGQIGSQLLI--TQGTPSQVIPQLASTLSAKAVYWNLDVEPYARKRDREVTIALQDK 120
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
I+VQ++ LL+ P + + + + +W + +Q +P +I P + +Q +
Sbjct: 121 DITVQNFWDQLLHPPGAVLTQSEQPYKVYTPFW-RNWSLQDKP-TISPQIKNLQGLTATE 178
Query: 182 GCSIEDLGLEDESEKSSNALLGRGW------SPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
+++ + + SE + LG W +PG + A L EF + +Y + R
Sbjct: 179 LATVDQIYV---SELPTAEDLGYSWETPLLLAPGETAAQARLEEFSHSAIYQYDEQRNFP 235
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
TSLLS L FG +S+R ++Q ++ + + E E + +V + + + RE+ ++
Sbjct: 236 FNQGTSLLSAALKFGVISLRAIWQTT-VEALENCRSE--EARVNVITWQKELAWREFYQH 292
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ FP + P K FPW + +F+AW QG+TGYP+VDA MR+L +TGW+HNR R
Sbjct: 293 CLYFFPELEQGPYRPAFKNFPWDNNPEHFQAWCQGKTGYPIVDAAMRQLQSTGWMHNRCR 352
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L++ WRWG KYF TL D DL + GWQ+ + S D L R+ +P Q
Sbjct: 353 MIVASFLTKDLIIDWRWGEKYFMQTLFDGDLASNNGGWQWSASSGMDPKPL-RIFNPASQ 411
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE-LGLNYPKPIIDLDLGR 474
KFD E EY+RQWLPE++ + TE++ K +E NYP+ I+D + +
Sbjct: 412 AQKFDSEAEYIRQWLPEISSIDTEYL--------VTGKIPELERYRCNYPQQIVDHKIQQ 463
Query: 475 ERL 477
+
Sbjct: 464 RKF 466
>gi|420263503|ref|ZP_14766140.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
gi|394769460|gb|EJF49316.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
Length = 473
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 147/477 (30%), Positives = 229/477 (48%), Gaps = 25/477 (5%)
Query: 7 IVWFRRDLRIEDNPALAAA----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
++WFR+DLR+EDN AL A + + V+ E QF P S + ++++
Sbjct: 5 VMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHL---NEKQFLPDAPSHDYFFSAVAHF 61
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKA--TKVVFNHLYDPVSLVRDHSIKEKLVE 120
++ K L + TL + + A +++ FN RD IKE + +
Sbjct: 62 IEAAKK--QNLTIHLLTGTLTEAFDQLFAHYPEWSQLYFNFDNRGFGRKRDLYIKELVEK 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL-VQAAGT 179
G++V S+ L++P E+ E G + F Y+ K +Q+ P + L + A
Sbjct: 120 KGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQL---PKPVYQKQALDFEKAAH 176
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ G ++ N G A K L FV++ L Y K+R
Sbjct: 177 FNDAPHFKAGTALLAKLLKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDLPSIKG 236
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FG+LS+RKV WA + FL+ + R++ + F
Sbjct: 237 TSRLSPFLSFGQLSIRKV----------WAACQGMPPSTGKATFLKELAWRDFYHMIYFT 286
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P L+ + W D F W+ G+TGYP++DA MR+L TGW+HNR+R+IV+
Sbjct: 287 HPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVA 346
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF K LL+ WR G YF L+D D +I GWQ+ + + D R+ +P QG KF
Sbjct: 347 SFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKF 406
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D EG +++Q++PELA++P ++IH P+ V LG +YP PI+D + R+R
Sbjct: 407 DKEGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKR 463
>gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
Length = 468
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 156/499 (31%), Positives = 231/499 (46%), Gaps = 78/499 (15%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T++WFR DLR+ DN AL AA G V ++ E G +RWW +QSL+ L Q
Sbjct: 9 TLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNALAQD 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G L L +T + L L + +S ++ V +N Y D ++K+ L + GI V
Sbjct: 66 LSFYGVPL-LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRDKGIEV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTF----DAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
S+ G LL EPWE+ G + F A W+ E V +
Sbjct: 125 HSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVK-----NNVPVPSHLT 179
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G +L + + + + L + +PG NA + L +F+E HL Y + R L ++TS
Sbjct: 180 GPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLE-HLQDYPQARDSLARSATS 238
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS +L FGE+S+ +V WA+ + E FL+ + R+++ + + P
Sbjct: 239 KLSAHLRFGEISIHRV----------WAETAAIDS-EGTELFLKELLWRDFAWHRLYALP 287
Query: 302 FTHERPLLSNLKYFPW-------------------------HADLGNFKAWRQGRTGYPL 336
+ + F W H DL AWR G+TG PL
Sbjct: 288 HMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLA---AWRAGKTGIPL 344
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI 396
VDAGMRELWATG +HNR+R++V+SF K L + WR G ++FW+TL+DAD + WQ+
Sbjct: 345 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 404
Query: 397 SGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456
+GS D R+ +P Q KFDP+ Y+R+W+PE
Sbjct: 405 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYGTP-------------------- 444
Query: 457 VELGLNYPKPIIDLDLGRE 475
+YP PI+DL R+
Sbjct: 445 -----SYPDPIVDLKESRQ 458
>gi|422415100|ref|ZP_16492057.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
Length = 467
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 151/485 (31%), Positives = 235/485 (48%), Gaps = 43/485 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A + + ++ P+ QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHAXXEEDLILLFQVNPE---QFIKGSPSHQAFFASVAHFQQE 59
Query: 66 L-KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L K+ +++ + L L E I KV FN RD + + + I+
Sbjct: 60 LNKNTHLQIMFGEPIELLKQLKEKIPTW--DKVFFNRDETGYGASRDEAAQAFFADNEIT 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPASILPPWRLVQA 176
V SY+ L+ E+ + F Y+ K L++ ++P +I +
Sbjct: 118 VHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPENIRKESLFPKY 177
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
I+DL D EK++N L FV++ L Y K R
Sbjct: 178 EEQFREL-IQDLPAFDSGEKAANTRLAN---------------FVKEDLASYDKARDVPA 221
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL GE+S+R V+Q L KEE EG+ + F + + R++ +
Sbjct: 222 LDKTSHLSRYLRTGEISIRTVWQAL-------QKEEATEGRAT---FEKELCWRDFYNMI 271
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+FP P+ N ++ W + FK W++G+TG+PLVDA MR+L TGW+HNR+R+
Sbjct: 272 YVSFPKQKNEPIQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRM 331
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q
Sbjct: 332 ITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQS 391
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDP+G ++R+++ EL +P ++IH P + G+ LG +YP PIID +ER
Sbjct: 392 EKFDPDGTFIRKYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIID---HKER 448
Query: 477 LTQAI 481
AI
Sbjct: 449 RKLAI 453
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 145/470 (30%), Positives = 225/470 (47%), Gaps = 18/470 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+ W RRDLR DN +L+AAA GSV P + + P P RV+ ++ +SLS L
Sbjct: 2 TVHWHRRDLRAADNRSLSAAAETGSVIPAFVFDPAVLEYASPPRVA--FMLESLSELRAW 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
+ G++LV+ T L A V +N Y ++ RD +++E L + G+
Sbjct: 60 YRERGSDLVV-ATGDPRDELPRIAREHDAESVSWNRDYSGLASKRDEAVREALTDAGLEA 118
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
S + LL+EP I ++G + + +W K + E P + + S
Sbjct: 119 TSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVPAPNGEQLASVSGDPLPSQ 178
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
E LG ++ + G A + L F + RY R ++TS LSP
Sbjct: 179 EALGFDEPEANIPDT--------GMEAARRRLETFCADPIYRYADQRDDPAADATSGLSP 230
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L +G + +R V++ + + ++ + +S F + R + ++ P T
Sbjct: 231 HLKWGTIGIRTVYEAVERAK---SEAPDDATADSCEEFESQLAWRAFYAHVLATNPHTVT 287
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
S W D +AW+ G TGYP+VDAGMR+L A ++HNR+R+IV+SF K
Sbjct: 288 TNYRSYENPIQWRTDAAALQAWKDGTTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTKD 347
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LLL WR G +F + L D D D+ GWQ+ SG+ D R+ +P QG + DP+ EY
Sbjct: 348 LLLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAEY 407
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+R ++PEL +P E IH W A +A+ + YP PI+D RE
Sbjct: 408 IRTYVPELEDVPAETIHE-WVALEPDERAS---VAPEYPDPIVDHAERRE 453
>gi|422020244|ref|ZP_16366784.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
gi|414101839|gb|EKT63436.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
Length = 477
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 154/480 (32%), Positives = 238/480 (49%), Gaps = 37/480 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN AL A D +V VY P++ P +++ +L Q+L L
Sbjct: 6 LVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWAAHNVSPRQIA--FLHQNLVEL 63
Query: 63 GQSLKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L G L+ T + ++ LL AT + FNH Y+ +RD ++++
Sbjct: 64 QHTLAKRGIPLICHTTATFADSVKWLLNFAQQQNATGLYFNHQYELNERLRDEQLRQQAQ 123
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAG 178
L I +Y+ LL P + ++G + + + L Q+ M P + AA
Sbjct: 124 HLNIF--TYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFCSFPAPKPRGAAL 181
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
++ + L + E S ++ G A L +F + + Y ++R +
Sbjct: 182 AVE--NTHPLFVHQSVEISPQ------FTAGEHAALAKLRQFCSERVQDYQRDRDIPAID 233
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLC 297
TS LSPYL G LS R QC+ ++L + F+ +ES F +L + RE+ +L
Sbjct: 234 GTSQLSPYLALGVLSPR---QCV--NRLLAENPQVFDSQESGGFSWLNELIWREFYSHLL 288
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP +P + ++ W+ D AW+ G+TGYP+VDA MR+L TGW+HNR+R+
Sbjct: 289 VAFPRLCRHQPFIEWTQHIQWNPDETALTAWKNGQTGYPIVDAAMRQLNQTGWMHNRLRM 348
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF VK LL+ WR G YF L+D L + GWQ+ + + D R+ +P QG
Sbjct: 349 IVASFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQG 408
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIH--HPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
KFDP+G ++R+WLPEL +P +IH H W A ++ LNYP PI+D R
Sbjct: 409 KKFDPQGTFIREWLPELRDVPETFIHEPHTW--------AESHQVSLNYPTPIVDHKQAR 460
>gi|423202670|ref|ZP_17189249.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
gi|404614866|gb|EKB11845.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
Length = 473
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 232/481 (48%), Gaps = 25/481 (5%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A A D V ++ P + Q + + ++ + LG+
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDELGRE 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AAL + + T++ N + RDH++ L E
Sbjct: 63 LAALGIPLHLLRVETFAEAPAALADLCRELGVTQLYANQAIEIDEQRRDHAVTAALAEQA 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+S NG + P + G F F + L+ E + + A T G
Sbjct: 123 VSCHWLNGCCVLPPGRVLTGSGDMFKVFTPFSRAWLKALDEEGFV------IHRAPTPRG 176
Query: 183 CSIEDLGLEDES---EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ L + + E + W G + A + L F+EQ +L Y + R
Sbjct: 177 EPLPWQPLAERAWVDEALGELTVDPHWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAG 236
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS+LSPYL G +S R+ L +Q L + ++ + +L + RE+ R+L
Sbjct: 237 TSVLSPYLAAGIISPRQCVAAL--QQRLGYRPQS--KAQPGFVWLNELIWREFYRHLLVL 292
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
P + RP PW D F AW +GRTGYP+VDA MR L ATGW+HNR+R+IV
Sbjct: 293 IPTLSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIV 352
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +P QG +
Sbjct: 353 ASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQR 412
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP+GE++R W+ ELA +P ++H P D L+ G + +YP P++D + R R
Sbjct: 413 FDPQGEFIRNWVTELADIPAAYVHQPHD----WLRLKGRQ---DYPAPMVDHAVARVRAI 465
Query: 479 Q 479
+
Sbjct: 466 E 466
>gi|339050708|ref|ZP_08647576.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047]
gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047]
Length = 463
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 157/482 (32%), Positives = 236/482 (48%), Gaps = 27/482 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW R DLR++DNPAL AA + V VY PK+ Q + +L+ L
Sbjct: 3 LVWLRNDLRLDDNPALYAACHGTAPVRAVYIATPKQWLQHDESAAKLGFRSAALTDLKSK 62
Query: 66 LKSLGAELVLFKTE--STLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L LG L + S +A LL A T + FN + RD+ + ++L L
Sbjct: 63 LAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLTALN 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I+ + N DLL I + +G + F W K Q+ P A G
Sbjct: 123 INCHTSNADLLICA-PIQNLQGQPYKVFTP-WYKAWLKQLNNQDNTP-----LTAPKAVG 175
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++ E +S A W +A + L +F ++ L Y R N TS
Sbjct: 176 SALNSPNNEHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTST 235
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP- 301
LSPYL G +S R+ CL Q A E+ ++ +ES +LR +G RE+ RYL +FP
Sbjct: 236 LSPYLASGLVSPRR---CLMAIQQT-AFEQGWDWRESA--WLRELGWREFYRYLMISFPH 289
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+H +P + + +PW + AW+ G TG+P++DA MR+L +T W+HNR+R++V+SF
Sbjct: 290 ISHGKPFKTTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASF 349
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K++L+ WR G ++F L+D D + GWQ+ + + D R+ +P Q KFD
Sbjct: 350 LCKLMLIDWREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDA 409
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EG+++R++LPELA + + IH+ P N L+ L YP PIID RER A+
Sbjct: 410 EGKFIRKFLPELAELDNKQIHN----PSNTLRQK-----LGYPDPIIDYKTARERAISAL 460
Query: 482 FK 483
K
Sbjct: 461 NK 462
>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
Length = 473
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 148/482 (30%), Positives = 241/482 (50%), Gaps = 28/482 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+IVW RRDLR+ D+PAL AA A G+V PV+ +E G +W L SL+ L +
Sbjct: 7 SIVWLRRDLRLADHPALCAALAGGGAVIPVFI---HDESVEALGAAPKWRLGLSLASLAR 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L + G+ L+L + + L L ++ A V ++ LYDP S+ RD ++K L E G+
Sbjct: 64 DLAACGSRLIL-RRGAALDVLRALVAETGAGAVHWSRLYDPQSIARDKAVKSALREAGVD 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW----DKCLQMQMEPASILPPWRLVQAAGTI 180
QS+ G +++EPW + + G + + W D+ + + + +P ++ A+ ++
Sbjct: 123 AQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAPKVWPASDSL 182
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D D + + ++ L G + A + L F + + Y R ++T
Sbjct: 183 D-----DWQMGAAMYRGADVCLPYQ-RVGEAAAMERLHAFADGAIAEYQDARNFPAVDAT 236
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS L +GE+S R+ + + G + +L+ + RE++ +L ++
Sbjct: 237 SALSENLTYGEISPRQCWHA--------GQRALHGGAKGAETWLKELVWREFAYHLMYHT 288
Query: 301 PFTHERPLLSNLKYFPWH--ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
P ++ FPW AD AW+QGRTG P VDA MRE++ TG +HNR R+IV
Sbjct: 289 PHILSGNWRTDWDAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIV 348
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+S+ K L+ W+ G+ +F + L D D + +GWQ+ +G PD R+ +PE Q K
Sbjct: 349 ASYLTKHLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLDK 408
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FD G Y R+W+ E R P + A P +A ++ + YP I+DL GR+R
Sbjct: 409 FDRGGAYTRRWIAEGQRTPPATALDYFKAVP---RAWQLDPSMLYPGRIVDLSQGRQRAL 465
Query: 479 QA 480
A
Sbjct: 466 NA 467
>gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB
48]
gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
48]
Length = 484
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 155/494 (31%), Positives = 242/494 (48%), Gaps = 32/494 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TI+WFR DLR++D+ + A GS V PVY + ++ Q G S+WWL +SL L Q
Sbjct: 5 TILWFRSDLRLQDHEGVEATLNSGSPVVPVYIY-DEQLAQRPLGAASKWWLDRSLRSLDQ 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ GA L++ K S LA L I + AT+++ + ++P D + + L GI
Sbjct: 64 SLRARGARLIVLKG-SALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSKAL---GIP 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA----SILPPWRLVQAAGTI 180
V+ +N LL +P +I G+ + F ++ L ++ PW A
Sbjct: 120 VEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRALLARGAARGHARKALATPW--PAPAEWP 177
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWS-------PGWSNADKVLTEFVEQHLLRYYKNRQ 233
+ I+ LGL K + L G WS PG A + L+ F+ L Y +R
Sbjct: 178 ESVDIDALGL-----KPALTLSGHDWSEGFDVWTPGEDGAHQRLSAFLRSGLKGYAPDRD 232
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ + TS LSP+L FGE+S +V + + + + + F + R++S
Sbjct: 233 RPDLDITSRLSPHLRFGEISPHRV-----LHEAEAHAAAHPALSDDLEKFRAELAWRDFS 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ P S PW D +AW++G TGY LVDAGMR+LW TG++HNR
Sbjct: 288 YNILQLQPELDRVNFKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R++ +SF K LL+ WR G ++FWDTL+DAD + WQ+++GS D R+ +P
Sbjct: 348 VRMVCASFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIFNPL 407
Query: 414 IQGSKFDPEGEYVRQWLPELA-RMPTEWIHHPWDAPPNVLKAAGVEL--GLNYPKPIIDL 470
Q KFDP+G Y R+++ ++ H ++ AGV P+ I+D
Sbjct: 408 TQAEKFDPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLIVDH 467
Query: 471 DLGRERLTQAIFKM 484
+ R+R A +M
Sbjct: 468 AVARQRALDAYAQM 481
>gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
Length = 533
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 151/482 (31%), Positives = 226/482 (46%), Gaps = 29/482 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I W RRD RI DN AL+AA G V PV+ E G ++ L + + G
Sbjct: 68 VIYWVRRDFRIGDNAALSAACATGRPVIPVFICDEVVESH---GAAPKFRLGEGVRVFGA 124
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L +G+ LVL + ++ LA L E ++ AT V +N LYDP S RD +K L G+
Sbjct: 125 ALAVVGSRLVLRRGDA-LAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAALKADGVE 183
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-----PASILPPWRLVQAAGT 179
V S+ G LL+EPW + + G + F W + PAS+ P + +
Sbjct: 184 VASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGRDVATPIPAPASVPAP-DVWPTSDR 242
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+D ++ + +++ +G + A L F+E + Y NR G +
Sbjct: 243 LDDWALGAAMVRGRDVLAAHICVGE------AAARTRLETFIEGRVQSYQTNRDLPGVDG 296
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS L +GE+S + W GK F + + RE++ +L +
Sbjct: 297 TSRLSENLTYGEISPAVCWHAGWAAI--------HSGKGQAEIFCKELVWREFAYHLVHH 348
Query: 300 FPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
P +R FPW+ D AW+QGRTG VDA MRE++ +G +HNR R+IV
Sbjct: 349 TPHIVDRNWKEGWDSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMIV 408
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+S+ K L+ W+ G +F D L D D + +GWQ+ +GS PD R+ +P Q K
Sbjct: 409 ASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDK 468
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FD G Y R W+ E + +DA P K G+ YP P++D+ GR+R
Sbjct: 469 FDRAGLYARTWIAEGQGDAPDTALSYFDAIP---KNWGLAATDQYPAPVVDMATGRQRAL 525
Query: 479 QA 480
+A
Sbjct: 526 EA 527
>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
gi|405748953|ref|YP_006672419.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
gi|417316860|ref|ZP_12103492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|424822329|ref|ZP_18247342.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|404218153|emb|CBY69517.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
Length = 467
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 230/481 (47%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K T KV FN RD + + E
Sbjct: 60 IDKTAHLQIMF------GEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ I
Sbjct: 114 QKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKHENI 168
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
S+ E +E +S+ + G A+ L F++ + Y K R + T
Sbjct: 169 RKESLFLKYEEQFAEMTSDLPI---LDIGERAANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+S+R ++Q L + E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISIRTIWQTL----------QETEATEGRATFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G+TG+PLVDA MR+L TGW+HNR+R+I +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+++R+++ ELA +P ++IH P K G+ LG +YP PI+D +ER A
Sbjct: 396 STGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 161/492 (32%), Positives = 239/492 (48%), Gaps = 44/492 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R V V+ P E P RV+ ++ L L
Sbjct: 6 LFWHRRDLRIADNTGLAAAQRQSPKVVGVFCLDPDILERDDIAPARVT--YMLGCLQALQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ G++L++ + + + A+KA V +N +P S RD +I L E GI
Sbjct: 64 ERYIQAGSQLLILHGPPVVV-IADLAEALKAKAVFWNWDVEPYSQKRDRTIINSLTEKGI 122
Query: 124 SVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILP--------PWRL 173
+ N D +L+ P EI+ +T + +W + + +P L +
Sbjct: 123 QFLNQNWDQILHSPEEIFSGAKTPYTVYTPFWKNWSSKPKAKPVETLENAEGLTADEQEI 182
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
+ AG I+ S +DLG E E SPG + A L F + Y + R
Sbjct: 183 AKLAGAIELPSAKDLGFVWEGELVI--------SPGEAAAQARLEAFTNNAITEYQEQRN 234
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKE--SVTFFLRAMGLRE 291
+ TS LS L FG + +R V+Q + A E + G+ S+ + + + RE
Sbjct: 235 FPAVDGTSQLSAALKFGVIGIRTVWQA-----TIEALENSRSGETEASIRTWQQELAWRE 289
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ ++ ++FP E K FPW + +F+AW +GRTG+P+VDA MR+L GW+H
Sbjct: 290 FYQHAMYHFPELAEGAYRETFKNFPWENNQEHFQAWCEGRTGFPIVDAAMRQLNEIGWMH 349
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR R+IV+SF K L + +WG KYF L+D DL + GWQ+ + S D L R+ +
Sbjct: 350 NRCRMIVASFLTKDLQINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL-RIFN 408
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q KFDP+GEY+RQW+ EL + T+++ PP L A G YPKPI+D
Sbjct: 409 PASQAQKFDPDGEYIRQWVSELRSVDTQYLVTG-KIPPLELHAVG------YPKPIVD-- 459
Query: 472 LGRERLTQAIFK 483
+ QA+FK
Sbjct: 460 ---HKTQQALFK 468
>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
Length = 469
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 161/490 (32%), Positives = 247/490 (50%), Gaps = 48/490 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPG---RVSRWWLKQSLSYL 62
+ WFRRDLR++D+ AL AA R ++ + P RV W SL L
Sbjct: 5 ALCWFRRDLRLDDHAALYAALRHSERVVCVFVFDRDILKHLPAQDRRVDFIW--HSLVEL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIK----ATKVVFNHLYDPVSLVRDHSIKEKL 118
+ L +LG++LV+ ++CI A+ A+ V + Y+P + +RD ++ E+L
Sbjct: 63 KEQLCALGSDLVVVSGRP-----VDCIPALAQEHGASTVWASRDYEPAACLRDAAVAERL 117
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQ---MQMEPASILPPWR 172
G +++ +++E E+ +T F Y W K L +Q P++ R
Sbjct: 118 SRHGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLTPFFLQAYPSTRYLN-R 176
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGR-GWSPGWSNADKVLTEFVEQHLLRYYKN 231
L + A T S+ DLG D LGR G G + A V T+F Q + Y +
Sbjct: 177 LARLAET-PLPSLADLGFTDTG-------LGRLGIRAGMAGAAAVFTDF-GQRIEHYQQW 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R S LS +L FG +S+R++ Q W +G T +L + RE
Sbjct: 228 RDFPAAKGVSYLSVHLRFGTISIRQLAQFAWQ-----------QGSAGATTWLSELIWRE 276
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ + L +++P E + + D F AW GRTGYPLVDA MR+L +G++H
Sbjct: 277 FYQQLLWHYPHVVEESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMH 336
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++ +SF VK LL+ WRWG +YF + L+D DL + GWQ+ + + D R+ +
Sbjct: 337 NRLRMVTASFLVKDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFN 396
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q KFDPEG+++R+++PELA + + IH PW A VL G LG +YP+PI+D
Sbjct: 397 PVTQSQKFDPEGKFIRRYVPELAALDNKAIHAPWQA--KVLP-GGFLLGRDYPRPIVD-- 451
Query: 472 LGRERLTQAI 481
E+ TQA+
Sbjct: 452 -HAEQRTQAL 460
>gi|398384297|ref|ZP_10542330.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
gi|397722893|gb|EJK83422.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
Length = 458
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 166/483 (34%), Positives = 243/483 (50%), Gaps = 35/483 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
IVWFR+DLR+ D ALAAAA G V PVY Q+ G +RWWL SL L +S
Sbjct: 5 VIVWFRQDLRLSDQAALAAAAHAGPVIPVYVLDDDGPRQWAMGGAARWWLHHSLRSLDES 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L++ G+ L+L S A +L ++A K V+ L R+ EK V + +
Sbjct: 65 LRARGSRLILRCGRS--ADVLAQVAAETGAKSVYA-LTHYAPWWRN---AEKAVGQRLDL 118
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC-S 184
++G LL + G + + + + L M PA P +QA +
Sbjct: 119 CLHDGTLLLPAGAVRTGGGTPYRIYTPF-ARALMEHMPPAVPQPVPAQIQAPLRWPRSDA 177
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++D L S ++A W+PG A+ L+ F+++ L Y R TS LS
Sbjct: 178 LDDWPLLPRSPDWASAFHA-DWTPGEKGAEAHLSAFMDE-LDEYPDARNLPSREGTSRLS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF-- 302
P+LHFGE+S +V W + N +G + FLR + R+Y+ + P
Sbjct: 236 PHLHFGEISPAQV----------WHQAANAQGDAMI--FLRELIWRDYAHNQIWTMPTYG 283
Query: 303 -THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ +P + + A G+F AW++GRTGYP+VDAGMR+LW TGW+HNR+R+I +SF
Sbjct: 284 SENAQPAFDGMGWRDLEAAKGDFYAWKRGRTGYPIVDAGMRQLWQTGWMHNRVRMIAASF 343
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
+K LL+ WR G ++FWDTL+DAD + + WQ+++GS D + R+ +P Q KFD
Sbjct: 344 LIKHLLIDWRHGARWFWDTLVDADYANNSVNWQWVAGSGVDANLFTRIMAPLSQSEKFD- 402
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
+Y+RQW+PELA++ IH P A +YP I GRER A
Sbjct: 403 AAQYIRQWVPELAQLDDHMIHDP---------DAHAARPADYPAKCIGHREGRERALAAY 453
Query: 482 FKM 484
M
Sbjct: 454 RAM 456
>gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
nitrogenifigens DSM 19370]
Length = 455
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 227/465 (48%), Gaps = 35/465 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW R+DLR+ D A AAA +G V PVY + G SRWWL SL L +
Sbjct: 5 VLVWLRQDLRLADQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKSLDEG 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G+ L+L + + L E + A +V +P R+ E+ V + +
Sbjct: 65 LRQRGSRLILRRGPAH-RELAELAREVGARRVHALAHVEP--WWRN---AERAVAKTLDL 118
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCS 184
+ G L P + G + + +W + L +M +P P R+ A DG
Sbjct: 119 VLHEGQYLAPPGTVLTGSGLPYKIYTPFW-RALSERMPTHRPVPAPGRIDAPASWPDGDR 177
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
++D L + R W+PG A + L F+ + RY + R TS LS
Sbjct: 178 LDDWTLVPTRPDWAAGFRTR-WTPGEVGAHERLDMFIGK-ASRYGEWRNFPSVEGTSRLS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S V+ + + SV+ FL +G R+Y+ + P
Sbjct: 236 PHLHFGEISAATVWHSV------------ADAGGSVSTFLGEVGWRDYAANVLLQMPDYA 283
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
R + FPW D + +AW+ G TGYP+VDAGMRELWATGW+HNR+R+I +SF VK
Sbjct: 284 GRSAREAFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMIAASFLVK 343
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL+ WR G ++FWDTL+DAD + + WQ+ +G+ D + R+ +P Q KFD G
Sbjct: 344 HLLIDWREGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDAAG- 402
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Y+R+W+PEL+ + IH P P YP P+ID
Sbjct: 403 YIRRWVPELSDVADADIHDPRIRP------------RGYPAPLID 435
>gi|341615188|ref|ZP_08702057.1| deoxyribodipyrimidine photo-lyase [Citromicrobium sp. JLT1363]
Length = 470
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 248/489 (50%), Gaps = 38/489 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWC---PKEEGQFYPGRVSRWWLKQSLSYLG 63
IVW RRDLR+ D PAL AAA+ G V PV+ PK + G RWWL SL L
Sbjct: 6 IVWLRRDLRLADQPALHAAAQAGPVVPVFILDDERPKGDDDRTYGGAHRWWLHHSLESLS 65
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ A +VL K +S ++ L ++A V N Y+P + +K+ L + G
Sbjct: 66 RGFGRHNARIVLRKGDS-VSVLAGLAHELEAEAVHANRHYEPWWREAEEELKDALPD-GT 123
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDG 182
+ ++G+ L P G + + ++ L++ M P LP P + Q + +
Sbjct: 124 RLCLHDGNYLMPPGTATTGSGDPYKIYTPFYRAMLEI-MPPRDELPVPSTISQPSDMPES 182
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++ D L S + + W+ G A + L + + H+ Y R + TS
Sbjct: 183 DALADWDLLPTSPNWATQMEDF-WTVGEDAAHERLGWWAD-HVAEYEDGRNLPSVDQTSQ 240
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP- 301
+SP+LH+GE+S ++ L K++ +G ++ F + R+Y++ + + FP
Sbjct: 241 MSPHLHWGEISPVTIWHAL--------KDKRSDGWKT---FESELIWRDYAQNIVYQFPD 289
Query: 302 FTHE--RPLLSNLKYFP----WHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ E R + + K + H +AW+ GRTGYP+VDAGMR+LWA GW+HNR+R
Sbjct: 290 YPRETYRDAIDDTKLWRNPNRGHIIQEELEAWQMGRTGYPIVDAGMRQLWALGWMHNRVR 349
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF +K LL+ WR G ++FWDTL+D D + WQ+++G+ D + R+ +P Q
Sbjct: 350 MIAASFLIKHLLIDWRHGERWFWDTLVDGDYASNGTNWQWVAGTGVDSNMFPRIMAPLKQ 409
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFD G Y+R+W+PELA +P IH P D + + A +YP+ II GRE
Sbjct: 410 SEKFDAAG-YIRKWVPELADLPDGEIHDPTD----LCRPA------DYPEKIISHKEGRE 458
Query: 476 RLTQAIFKM 484
R +A M
Sbjct: 459 RALEAYRAM 467
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 232/482 (48%), Gaps = 51/482 (10%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPK-EEGQFY-PGRVSRWWLKQSLSYL 62
I WFRRDLR+ DN AL AAA V PV+ + G+F P R +L L+ L
Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQ--FLLDCLAAL 60
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L++ G LV+ + + L L + + A+ V +N Y P ++ RD +IK+ L E G
Sbjct: 61 DAELRTFGLHLVVRRGDP-LRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALREAG 119
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGTID 181
S+ +++E E+ G +T + Y + ++ EP ++ RL TI
Sbjct: 120 YEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVTVQDMPRL----ATIP 175
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
E L + + A L R + G + A + L FV L Y + R + TS
Sbjct: 176 LPVSEPLPHLTDLLPDAPATLPR-FPAGEAVALEALERFVRGPLASYAQGRDLMAVAGTS 234
Query: 242 LLSPYLHFGELSVRKVFQCL--------------WMKQILWAKEENFEGKESVTFFLRAM 287
LSPYL G LS R QC+ W+ +++W
Sbjct: 235 RLSPYLRLGVLSPR---QCVAAALAAPPGPGPESWIGELIW------------------- 272
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
R++ + ++FP W D F AW+QG TGYP+VDA MR+L
Sbjct: 273 --RDFYVQVLYHFPHALRGSFKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQRE 330
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR R+IV+SF K LL+ WRWG ++F L+D D + GWQ+ +G+ D
Sbjct: 331 GWMHNRARMIVASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFF 390
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P QG KFDPEG YVR+++PEL +PT +IH P + AGV +G +YP PI
Sbjct: 391 RIFNPVSQGQKFDPEGAYVRRYVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPI 450
Query: 468 ID 469
+D
Sbjct: 451 VD 452
>gi|386743236|ref|YP_006216415.1| deoxyribodipyrimidine photolyase [Providencia stuartii MRSN 2154]
gi|384479929|gb|AFH93724.1| deoxyribodipyrimidine photolyase [Providencia stuartii MRSN 2154]
Length = 483
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 239/481 (49%), Gaps = 37/481 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL++A D V V+T P++ + +L Q+L L
Sbjct: 9 LVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITFLHQNLIALRD 68
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV-- 119
SL L L T L+A +L+ + + FNH Y+ + +H E L+
Sbjct: 69 SLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYE----LNEHRRDEWLIHH 124
Query: 120 -ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAA 177
+ V +++ LL P + +++G + + + + Q+ LP Q
Sbjct: 125 PQRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPA---PQPR 181
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G + +I+DL L + + + + + G S A + L +F + Y ++R
Sbjct: 182 G--EALAIDDLSLPLFAHHAVD--IAPHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSI 237
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYL 296
TSLLSPYL G LS R QCL ++L F+ +S F +L + RE+ +L
Sbjct: 238 EGTSLLSPYLAIGVLSPR---QCL--NRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHL 292
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP +P + + W++ +FKAW+ G+TGYP+VDA MR+L TGW+HNR+R
Sbjct: 293 LVAFPRLCRHQPFIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLR 352
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF VK LL+ WR G +YF L+D L + GWQ+ + + D R+ +P Q
Sbjct: 353 MITASFLVKDLLIDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQ 412
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIH--HPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G KFDP+G ++RQWLPEL +P ++IH H W A + L+YP PI+D
Sbjct: 413 GKKFDPQGAFIRQWLPELQSVPDKYIHTPHEW--------AEANHVTLDYPAPIVDHKQA 464
Query: 474 R 474
R
Sbjct: 465 R 465
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/498 (30%), Positives = 241/498 (48%), Gaps = 43/498 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+ W RRDLR++D+ AL A + G V V+ + V ++ SL L +
Sbjct: 48 VLCWLRRDLRLQDHAALHHALQSGLPVACVFVFDSTILDSLPADDVRVAFILDSLQSLQE 107
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ G+EL+ + L + + A V N Y+P +L RDH++ + L G
Sbjct: 108 QLRQHGSELITVHGDPVQQIPL-LANHLNAQTVYANEDYEPAALTRDHAVSQSLAAQGRV 166
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG-- 182
++ + +++ EI ++ +T F Y L +++P+ I QA G
Sbjct: 167 LKLFKDQVIFARDEILTQQKQPYTVFTPYKRNWL-ARIQPSDI-------QAYDCSQGQW 218
Query: 183 --------CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+++LG +E+ LL GW A +L +F E + Y++ R
Sbjct: 219 APLPAQALPCLKELGFHEEAR---TKLLSPA---GWQGAQTLLQQF-EPRIHAYHERRDF 271
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
S L+P+L FG LS+R+ W E +L + RE+ +
Sbjct: 272 PAKRGVSYLAPHLRFGTLSIRQAVALAWPS-----------DSEGAATWLSELIWREFYQ 320
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
++ P T + K P+ F+AW+ G+TGYP+VDA MR+L +G++HNR+
Sbjct: 321 QFLWHHPETAQESFKPAYKNLPFPNRDDWFQAWKDGQTGYPIVDAAMRQLNQSGYMHNRL 380
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+I +SF VK LL+ WRWG +YF LLD D+ ++ GWQ+ + + D R+ +P
Sbjct: 381 RMISASFLVKDLLIDWRWGEQYFAQKLLDYDMASNVGGWQWAASTGCDAQPYFRIFNPIT 440
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q KFDPEG+++R+++PELA + + IH PW A L LG +YP PI+D D R
Sbjct: 441 QSRKFDPEGQFIRRYVPELASLDKQAIHAPWQAKQLPL---AFRLGQHYPAPIVDHDTQR 497
Query: 475 ERLTQAIFKMW-EMEAAD 491
L A+FK E EAAD
Sbjct: 498 H-LALALFKQAGEQEAAD 514
>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
Length = 467
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 230/481 (47%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K T KV FN RD + + E
Sbjct: 60 IDKTAHLQIMF------GEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ I
Sbjct: 114 QKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKHENI 168
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
S+ E +E +S+ + G A+ L F++ + Y K R + T
Sbjct: 169 RKESLFLKYEEQFAEMTSDLPI---LDIGERAANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+S+R ++Q L + E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISIRTIWQSL----------QETEATEGRATFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G+TG+PLVDA MR+L TGW+HNR+R+I +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+++R+++ ELA +P ++IH P K G+ LG +YP PI+D +ER A
Sbjct: 396 STGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|423208514|ref|ZP_17195068.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|404618359|gb|EKB15279.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
Length = 473
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 228/478 (47%), Gaps = 25/478 (5%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A A D V ++ P + Q + + ++ + LG+
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDELGRE 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG +L L + E+ A L T++ N + L RDH++ L E
Sbjct: 63 LAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAALAEQA 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+S +NG + P + G F F + L+ E + + A T G
Sbjct: 123 VSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKSLDEEGFV------IHRAPTPRG 176
Query: 183 CSIEDLGLEDES---EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ L + + E + W G + A + L F+EQ +L Y + R
Sbjct: 177 EPLPWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAG 236
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS+LSPYL G +S R QC+ + Q + + + L + RE+ R+L
Sbjct: 237 TSVLSPYLAAGIISPR---QCVAVLQQRLGYRPQSKAQPGFVW-LNELIWREFYRHLLVL 292
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
P + RP PW D F AW +GRTGYP+VDA MR L TGW+HNR+R+IV
Sbjct: 293 IPALSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIV 352
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +P QG +
Sbjct: 353 ASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQR 412
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
FDP+GE++R W+ ELA +P ++H P D L+ G + +YP P++D + R R
Sbjct: 413 FDPQGEFIRTWVTELADIPPAYVHQPHD----WLRLKGRQ---DYPVPMVDHAVARVR 463
>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|405751816|ref|YP_006675281.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424713475|ref|YP_007014190.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|404221016|emb|CBY72379.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424012659|emb|CCO63199.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
Length = 467
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 230/481 (47%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKENDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K + KV FN RD + + E
Sbjct: 60 IDKTAHLQIMF------GEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ I
Sbjct: 114 QKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKHENI 168
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
S+ E +E +S+ + G A+ L F++ + Y K R + T
Sbjct: 169 RKESLFLKYEEQFAEMTSDLPI---LDIGERAANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+S+R ++Q L + E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISIRTIWQSL----------QETEATEGRATFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G+TG+PLVDA MR+L TGW+HNR+R+I +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+++R+++ ELA +P ++IH P K G+ LG +YP PI+D +ER A
Sbjct: 396 STGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
H7858]
gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731355|ref|YP_006204851.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|405754672|ref|YP_006678136.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406703371|ref|YP_006753725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
gi|417314672|ref|ZP_12101366.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. H7858]
gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|384390113|gb|AFH79183.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|404223872|emb|CBY75234.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406360401|emb|CBY66674.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
Length = 467
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 230/481 (47%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K + KV FN RD + + E
Sbjct: 60 IDKTAHLQIMF------GEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ I
Sbjct: 114 QKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKHENI 168
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
S+ E +E +S+ + G A+ L F++ + Y K R + T
Sbjct: 169 RKESLFLKYEEQFAEMTSDLPI---LDIGERAANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+S+R ++Q L + E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISIRTIWQTL----------QETEATEGRATFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G+TG+PLVDA MR+L TGW+HNR+R+I +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+++R+++ ELA +P ++IH P K G+ LG +YP PI+D +ER A
Sbjct: 396 STGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404407050|ref|YP_006689765.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404241199|emb|CBY62599.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
Length = 467
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 232/494 (46%), Gaps = 61/494 (12%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K T KV FN RD + + E
Sbjct: 60 IDKNAHVQIMF------GEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------CLQMQMEPA-----SI 167
I VQS++ L+ E+ + F Y+ K ++ ++P S+
Sbjct: 114 QKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIWKESL 173
Query: 168 LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
P + A T C DL + D E+++N L F++ +
Sbjct: 174 FPKYEEQFAEMT---C---DLPILDSGERAANTRLAN---------------FIKHDIAD 212
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y K R + TS LS YL GE+S+R ++Q L + E E F + +
Sbjct: 213 YDKARDFPELDKTSHLSRYLRTGEISIRTIWQEL----------QETEATEGRATFEKEL 262
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
R++ + +FP P+ N ++ W + FKAW++G+TG+PLVDA MR+L T
Sbjct: 263 CWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKET 322
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R+I +SF K LL+ WR+G KYF L+D D +I GWQ+ + + D
Sbjct: 323 GWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYF 382
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFDP +++R+++ ELA +P ++IH P K G+ LG +YP P+
Sbjct: 383 RIFNPTTQSQKFDPTAKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPL 442
Query: 468 IDLDLGRERLTQAI 481
ID +ER AI
Sbjct: 443 ID---HKERRKLAI 453
>gi|408795918|gb|AEB78728.2| DNA photolyase [Acinetobacter sp. Ver3]
Length = 470
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 150/490 (30%), Positives = 242/490 (49%), Gaps = 38/490 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFR+DLR+ DN AL A R G+ V P++ + + + L L
Sbjct: 2 NLIWFRQDLRVRDNTALMEATRHGNTCAVVILSPEQWKLHDDAEIKIDFYLRQLKSLEIE 61
Query: 66 LKSLGAEL---VLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
LK L ++ + + A LL + + T + N L RD ++ L
Sbjct: 62 LKQFNIPLMVEIVPQWDDVPARLLTFANKYQVTVIHANIEIGVNELHRDAQVQTLLESHK 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM----EPASI--LPPWRLVQA 176
++V+ Y+ ++ I ++ + F AY C ++ +P ++ + P L+Q
Sbjct: 122 VTVEYYHDRTIFPLGSIRNKTHQPYQVFGAYKRACYEILNISVPQPLAVPKVQPHELIQR 181
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
T SI D +A + W G S A ++L +FV+++L Y + R
Sbjct: 182 FHTFKIPSIHDF--------YPDAQVKYQWPVGESFALQMLEKFVDENLEPYKQQRDFPN 233
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRAMGLREY 292
++TS LSPYL+ G +S+R QCL I NF +G+++ +L + RE+
Sbjct: 234 IDATSQLSPYLNLGIVSIR---QCL--AAIFSRSNGNFHLYSDGQQT---WLDELLWREF 285
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+++ F+FP + +P N PW AW+ G+TG P+VDAG+R++ TGW+H
Sbjct: 286 YQHILFDFPRLSKYQPFNLNTSNVPWRDAPDELNAWKFGQTGIPIVDAGIRQMLETGWMH 345
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+ F K LL+ WR G ++F L+D DL + GWQ+ + + D R+ +
Sbjct: 346 NRVRMIVAMFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFN 405
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q KFD +G Y+R+W+PELA + + IH P+ PN L LNYPKPI+DL
Sbjct: 406 PISQSQKFDSQGNYIRKWVPELAHLDAKIIHEPYAKNPN--------LKLNYPKPIVDLK 457
Query: 472 LGRERLTQAI 481
+ R+R A
Sbjct: 458 MSRQRALAAF 467
>gi|388257421|ref|ZP_10134600.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
gi|387938588|gb|EIK45140.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
Length = 469
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 234/486 (48%), Gaps = 35/486 (7%)
Query: 8 VWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+W R DLR+ DNPAL AA G+ V VY C R ++++ L L L
Sbjct: 1 MWLRHDLRLRDNPALFKAAELGAGVVAVYIHCDAYVRLHDQSAAQRDFIRRHLHILRNEL 60
Query: 67 KSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L L++ + E LL ++ + FN Y L RD + + L E GI
Sbjct: 61 ARLNITLLVSRVEKPAQIAPELLRLAQSVNGSHCFFNAEYPVNELNRDMAANQLLREQGI 120
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA---GTI 180
+V+ + + P + + +G + F A+ K LQ M P S L P L Q+ I
Sbjct: 121 AVKRCHDRCIVPPGMVRNGQGEPYKVFTAFKKKWLQTVM-PLS-LTPLALPQSQTLDSVI 178
Query: 181 DGCSIE--DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
CS + D + +AL W G A + L +F+ L +Y R
Sbjct: 179 KACSPDAIDQLFSGHDLRDLSAL----WPAGEQEAYRRLDDFIANGLTQYLDQRDYPAIE 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSPY G LS R+ + +L ++ G ++ + RE+ +++
Sbjct: 235 GTSTLSPYFAVGSLSPRQA-----LSAVLAYTYGDWSGNAGAACWISELIWREFYQHVVV 289
Query: 299 NFPFTHERPLL-SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++P +R + ++ + FPW D F+AW +G TG P+VDA MR+L ATGW+HNR+R++
Sbjct: 290 DYPQVCKRKAMQAHTEAFPWQKDTALFEAWCKGMTGIPIVDAAMRQLNATGWMHNRLRMV 349
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+ F K + WRWG +YF L+D D + GWQ+ + + D R+ +P Q
Sbjct: 350 VAMFLTKNCQIDWRWGEQYFMSQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPCSQSE 409
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
+FDP+G+++R+W+ E+A + + IH+P PP + YP+PI+DL R +
Sbjct: 410 RFDPKGDFIRKWVSEVAHLSAKEIHNP---PPLI----------KYPRPIVDLSESR-KA 455
Query: 478 TQAIFK 483
T A+FK
Sbjct: 456 TIALFK 461
>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404280146|ref|YP_006681044.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404285957|ref|YP_006692543.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404226781|emb|CBY48186.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404244886|emb|CBY03111.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 467
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 230/481 (47%), Gaps = 35/481 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLR+ DN AL A ++ + ++ P QF G S S+++ Q
Sbjct: 3 SVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQGFFASVAHFKQE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKLVE 120
+ ++F +EC +K + KV FN RD + + E
Sbjct: 60 IDKTAHLQIMF------GEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFFDE 113
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
I VQ+++ L+ E+ + F Y+ K + E P+++ I
Sbjct: 114 QKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKHENI 168
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
S+ E +E +S+ + G A+ L F++ + Y K R + T
Sbjct: 169 RKESLFLKYEEQFAEMTSDLPI---LDIGERAANTRLANFIKHDVADYDKARDFPELDKT 225
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL GE+S+R ++Q L + E E F + + R++ + +F
Sbjct: 226 SHLSRYLRTGEISIRTIWQTL----------QETEATEGRATFEKELCWRDFYNMIYVSF 275
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
P P+ N ++ W + FKAW++G+TG+PLVDA MR+L TGW+HNR+R+I +S
Sbjct: 276 PNQKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G+++R+++ ELA +P ++IH P K G+ LG +YP PI+D +ER A
Sbjct: 396 STGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVD---HKERRKLA 452
Query: 481 I 481
I
Sbjct: 453 I 453
>gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Acinetobacter sp. ADP1]
gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Acinetobacter sp. ADP1]
Length = 477
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/487 (29%), Positives = 246/487 (50%), Gaps = 28/487 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
++WFR DLR+ D+ AL A + GS P + Q + + + L+ L Q L
Sbjct: 4 LIWFRNDLRLNDHAALWHATQAGSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQEL 63
Query: 67 KSLGAELV--LFKTESTLAALLECISAIKATKVVFNHLYDPVSLV-RDHSIKEKLVELGI 123
++ L+ + +A + IS + V+ ++ ++ + RDH+++E L ++G
Sbjct: 64 NTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKIGK 123
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILP-PWRLVQ----AA 177
++ ++ L+ I ++ + F + C + + ++ P P + Q A
Sbjct: 124 NLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPEIAK 183
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
S++ LG + N W G + A +L +F + + RY+++R
Sbjct: 184 KEAAIPSLKQLGYSQIDQHIQNE-----WPIGETFALNLLEDFTQDKINRYHESRDYPAQ 238
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
+ TS +S YL G LS+R+ Q ++ KQ + F + +L + RE+ + L
Sbjct: 239 DGTSHISAYLTIGILSIRQCIQAIFQKQ----HGQFFLNNKGQEIWLNELLWREFYQQLL 294
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
F+FP + +P + K PW+ + +F+AW QG+TG P+VDAGMR+L ATGW+HNR+R+
Sbjct: 295 FDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRM 354
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I + F K LL+ WR G K+F L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 355 ICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQS 414
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDPEG ++++W+PEL + ++ IH P+ A + LNYPKPIIDL R+
Sbjct: 415 QKFDPEGVFLKKWIPELKHLDSKHIHDPY--------AYQHKTELNYPKPIIDLKATRKN 466
Query: 477 LTQAIFK 483
+ +FK
Sbjct: 467 AIE-VFK 472
>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
Length = 473
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 230/481 (47%), Gaps = 33/481 (6%)
Query: 7 IVWFRRDLRIEDNPALAAA----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
++WFR+DLR+EDN AL A + + V+ K QF P S + ++++
Sbjct: 5 VMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDK---QFLPEAPSHDYFFSAVAHF 61
Query: 63 GQSLK--SLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
++ K +L L+ L C + +++ FN RD IKE + +
Sbjct: 62 IKAAKKQNLTIHLLTGTLTEAFDQLFACYP--EWSQLYFNFDNRGFGRKRDLYIKELVEK 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-----QMEPASILPPWRLVQ 175
GI+V S+ L++P E+ E G + F Y+ K +Q+ Q +
Sbjct: 120 KGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEKSVHFDD 179
Query: 176 AAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
A G ++ LE+ S + G A K L FV++ L Y K+R
Sbjct: 180 APHFKAGTALLAKLLENRKTDFSTIV-------GEDYAHKQLQAFVQKRLAAYEKDRDIP 232
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
TS LSP+L FG++S+RKV WA + FL+ + R++
Sbjct: 233 SIKGTSRLSPFLSFGQISIRKV----------WAACQGMPSSTGKATFLKELAWRDFYHM 282
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ F+ P L+ + W + W+ G+TGYP++DA MR+L TGW+HNR+R
Sbjct: 283 IYFSHPEQKNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTGWMHNRLR 342
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K LL+ WR G YF L+D D +I GWQ+ + + D R+ +P Q
Sbjct: 343 MIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQ 402
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G KFD +G +++Q++PELA++P ++IH P+ V LG +YP PI+D + R+
Sbjct: 403 GKKFDKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARK 462
Query: 476 R 476
R
Sbjct: 463 R 463
>gi|433459950|ref|ZP_20417586.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432192066|gb|ELK48979.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 474
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 238/485 (49%), Gaps = 20/485 (4%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA---ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+ VWFRRDLR++DN ALA A +DG ++ + + R ++ Q+L+
Sbjct: 2 TKRAVWFRRDLRLQDNTALAKALEHTKDGDELLLFFHIHPALNESFTARHDYFF--QTLA 59
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ + GA V F T T A I V FN RD +++ +
Sbjct: 60 SFVEKAEDAGAP-VHFITGDTEDAFENLIETAGIDMVYFNRDETGFGYERDKQVEKYVTS 118
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
L + V Y ++ E+ + G + F Y K Q+ +PA L++ A
Sbjct: 119 LDVDVYHYLDHHIHGADEVKKQDGGFYKVFTPYLKKWKQLP-KPAVQKVDDELLKKAAVD 177
Query: 181 DGCSIED--LGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ S ++ D EK G G + W+ L +F++ + Y + R +
Sbjct: 178 ERASFKEGESAYADLLEKIEADFGGVGEADAWAR----LEQFLDADIYDYDERRDFPAVD 233
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TSL+S YL G +SVR V+ + Q+ + K+ E V ++ + R++ +
Sbjct: 234 GTSLMSRYLRTGAISVRSVYHQI-HDQVDFRKK-----TEGVETYISELAWRDFYNMIYH 287
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P H+ ++ + PW+ D + W++GRTG+P++DA MR+L +GW+HNR+R+ V
Sbjct: 288 FYPNAHDEEVVEKYQGIPWNNDEDVLERWKEGRTGFPIIDAAMRQLNESGWMHNRLRMAV 347
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K LL+ WR G +YF + L+D D +I GWQ+ + + D R+ +P Q +
Sbjct: 348 ASFLTKDLLMDWRKGERYFQEKLVDYDPASNIGGWQWAASTGTDPVPYFRVFNPTRQSER 407
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FDP G ++++WLPEL +P ++IH P P N + A +G +YP+P++D RER
Sbjct: 408 FDPHGRFIKEWLPELRDVPKKYIHEPAKMPENEQEKAKCMIGEDYPEPLVDHKRMRERAI 467
Query: 479 QAIFK 483
Q +FK
Sbjct: 468 Q-LFK 471
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 236/490 (48%), Gaps = 39/490 (7%)
Query: 7 IVWFRRDLRIEDNPALAAA----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLR+ D+ LA A AR VF + P RV+ +L L L
Sbjct: 6 LFWHRRDLRVSDSIGLAQACNTNARVIGVF-CFDRAILTNDSVAPARVT--YLVGCLQSL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ + G++L LF + + + + +KA V ++ +P S RD SI L G
Sbjct: 63 AKDYRRAGSQL-LFVEGNPVVKIPLLATTLKAQAVYWHLDIEPYSQTRDESIATTLKSDG 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI---LPPWRLVQAAGT 179
I V + LL+ P EI +T + +W + + +PA + LPP +L
Sbjct: 122 IEVHTNWDQLLHAPSEIITGNKQPYTVYTPFW-RNWNSRSKPAPVEVKLPPCQL------ 174
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKNRQ 233
D + DL + + LG W PG S A + L EF ++ + Y + R
Sbjct: 175 -DATELTDLAQVPTIDLPTAKDLGFTWENPLKLEPGTSAAARELAEFCDRSICEYDEQRN 233
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLREY 292
TS LS L FG + +R V W I A+ + E + +T + + + RE+
Sbjct: 234 YPALTGTSGLSAALKFGVIGIRTV----WAATIEAMAQTSSDEARAGITTWQQELAWREF 289
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+ ++FP + LK+FPW D F AW +G TGYP+VDA MR+L GW+HN
Sbjct: 290 YQQAMYHFPSLAQGAYRDPLKHFPWQDDQNRFDAWCRGETGYPIVDAAMRQLNEIGWMHN 349
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D L R+ +P
Sbjct: 350 RCRMIVASFLTKDLIINWQWGEKYFMQRLIDGDLSANNGGWQWSASSGMDPKPL-RIFNP 408
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
Q KFDPE +Y+RQW+PEL + T I + PP G YP PI+D +
Sbjct: 409 YTQAQKFDPEADYIRQWVPELKSVETNLILSG-NIPPLTRHQIG------YPLPIVDHSV 461
Query: 473 GRERLTQAIF 482
++RL + ++
Sbjct: 462 -QQRLFKDLY 470
>gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715, partial [Trichoplax
adhaerens]
Length = 384
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 198/382 (51%), Gaps = 8/382 (2%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+VW RRDLR+ DNPAL AA+ G + VY + G+ G+ WWL SL L
Sbjct: 8 TLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGRRKTGQACLWWLYHSLKSLHNQ 67
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L L++ L E + + A + +N Y+P RD SI+EKL ++V
Sbjct: 68 LSQWNIPLIMKSGNDAFTILKELLDSYNADTIYWNRCYEPFEYNRDCSIEEKLKMENVTV 127
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
++Y +L+EPW I +G + +W++CL + +P + G C
Sbjct: 128 ETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCLSLP-QPRKPYDKPKFKNQTGCQSKC-- 184
Query: 186 EDLGLEDESEKSSNAL---LGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++ + K S + L W PG A L F++ L Y + Q L N+TS
Sbjct: 185 DEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQCLRLNTTSN 244
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSPYLHFGE+S V+ + + + E ES+ +LR++G REY+ +L F++P
Sbjct: 245 LSPYLHFGEISPFTVWHSV--RHASSSAEPPAVKSESLKQYLRSLGWREYTCHLLFHYPD 302
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
++ S+ + D ++W+QG TGYP+VDAGMR+L G + NR+R+IV+SF
Sbjct: 303 LPQKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLRMIVASFL 362
Query: 363 VKVLLLPWRWGMKYFWDTLLDA 384
+K LL+PW+ G ++FW L+DA
Sbjct: 363 IKHLLVPWQKGEEWFWSKLIDA 384
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/477 (29%), Positives = 228/477 (47%), Gaps = 25/477 (5%)
Query: 7 IVWFRRDLRIEDNPAL----AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
++WFR+DLR+EDN AL A+ + + V+ K QF P S + ++++
Sbjct: 1 MMWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDK---QFLPDAPSHDYFFSAVAHF 57
Query: 63 GQSLK--SLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
++ K +L L+ L C + +++ FN RD I E + +
Sbjct: 58 IEAAKKQNLTIHLLTGTLTEAFDQLFACYP--EWSQLYFNFDNRGYGRKRDLYITELVEQ 115
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL-VQAAGT 179
GI+V S+ L++P E+ E G + F Y+ K +Q+ P + L + A
Sbjct: 116 KGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQL---PKPVYQKHALDFEKAAH 172
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ G +E N G A K L FV++ L Y K+R
Sbjct: 173 FNDAPHFKAGTMLLAELIKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSIKG 232
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSP+L FG++S+RKV WA + FL+ + R++ + F
Sbjct: 233 TSRLSPFLSFGQISIRKV----------WAACQEMPSSTGKATFLKELAWRDFYHMIYFT 282
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P L+ + W D W+ G+TGYP++DA MR+L TGW+HNR+R+IV+
Sbjct: 283 HPEQKNYELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVA 342
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF K LL+ WR G YF L+D D +I GWQ+ + + D R+ +P QG KF
Sbjct: 343 SFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKF 402
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
D +G +++Q++PELA++P +++H P+ + LG +YP PI+D + R+R
Sbjct: 403 DKDGTFIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDYPLPIVDHNEARKR 459
>gi|388567569|ref|ZP_10154000.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
gi|388265174|gb|EIK90733.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
Length = 496
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 249/491 (50%), Gaps = 40/491 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWC----PKEEGQFYPGRVSRW-WLKQSLSY 61
++WFRRDLR DN AL A R WC +E P R ++++SL
Sbjct: 8 LMWFRRDLRANDNAALHHALRHCRRL----WCVFVFDREILDPLPRADRRVEFIRESLVA 63
Query: 62 LGQSLKSLGAE--------LVLF-KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
L L+ LGAE +VL + + + AL + + A V NH +P +L RD
Sbjct: 64 LDARLRELGAEHGQANTGLIVLHDRAQHAIPALAQRLGA---QAVFANHDDEPAALTRDA 120
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR 172
+ L G+ ++++ +++E E+ + AF F Y + L+ + P L +
Sbjct: 121 QVLGALAHQGVLLRTHKDHVIFERREVLTQAERAFGVFTPYKNAWLKA-LTPFH-LKAYP 178
Query: 173 LVQAAGTI----DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRY 228
+ + AG + +G S L + + +N L G A ++ +F+ Q + RY
Sbjct: 179 ITKHAGALAPLPEGLSRPVPTLAEIGFERTN-LAQLPLPTGEDGAHQLFDDFL-QRIDRY 236
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG 288
+ R S LS +L FG +S+R + A E + +G + +L +
Sbjct: 237 DEARDYPAIKGPSYLSAHLRFGTVSIRALASI--------AHELHAQGNPGASTWLSELI 288
Query: 289 LREYSRYLCFNFPFTHE---RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
R++ + NFP + +P ++Y A FKAW +GRTGYPLVDA M ++
Sbjct: 289 WRDFYHQILSNFPHVAQSAFKPAYDAVRYEHGKAADALFKAWCEGRTGYPLVDAAMAQIN 348
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TG++HNR+R++V+SF VK L + W+WG +YF + L+D DL + GWQ+ S S D
Sbjct: 349 QTGYMHNRLRMVVASFLVKDLGIHWQWGERYFAEHLIDYDLAANNGGWQWASSSGCDAQP 408
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q +FDP+G ++R++LP+LA +P IH PW A P L AAGVE+G++YP
Sbjct: 409 WFRIFNPVTQSERFDPQGRFIRRYLPQLAELPDHAIHAPWKATPVELAAAGVEIGVHYPA 468
Query: 466 PIIDLDLGRER 476
P+++ + R++
Sbjct: 469 PLVNHVVARDK 479
>gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
gi|188023634|gb|EDU61674.1| FAD binding domain of DNA photolyase [Providencia stuartii ATCC
25827]
Length = 483
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 239/481 (49%), Gaps = 37/481 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL++A D V V+T P++ + +L Q+L L
Sbjct: 9 LVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITFLHQNLIALRD 68
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV-- 119
SL L L T L+A +L+ + + FNH Y+ + +H E L+
Sbjct: 69 SLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYE----LNEHRRDEWLIHH 124
Query: 120 -ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAA 177
+ V +++ LL P + +++G + + + + Q+ LP Q
Sbjct: 125 PQRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPA---PQPR 181
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G + +I+DL L + + + + + G S A + L +F + Y ++R
Sbjct: 182 G--EALAIDDLSLPLFAHHAVDIV--PHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSI 237
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYL 296
TSLLSPYL G LS R QCL ++L F+ +S F +L + RE+ +L
Sbjct: 238 EGTSLLSPYLAIGVLSPR---QCL--NRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHL 292
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP +P + + W++ +FKAW+ G+TGYP+VDA MR+L TGW+HNR+R
Sbjct: 293 LVAFPRLCRHQPFIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLR 352
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF VK LL+ WR G +YF L+D L + GWQ+ + + D R+ +P Q
Sbjct: 353 MITASFLVKDLLIDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQ 412
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIH--HPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G KFDP+G ++RQWLPEL +P ++IH H W A + L+YP PI+D
Sbjct: 413 GKKFDPQGAFIRQWLPELQSVPDKYIHTPHEW--------AEANHVTLDYPAPIVDHKQA 464
Query: 474 R 474
R
Sbjct: 465 R 465
>gi|406675941|ref|ZP_11083127.1| hypothetical protein HMPREF1170_01335 [Aeromonas veronii AMC35]
gi|404626164|gb|EKB22974.1| hypothetical protein HMPREF1170_01335 [Aeromonas veronii AMC35]
Length = 473
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 230/485 (47%), Gaps = 39/485 (8%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A A D V ++ P + Q + + ++ + LG+
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDVLGRE 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AAL + T++ N + RDH++ E
Sbjct: 63 LAALGIPLHLLRVETFAEAPAALADLCREQGVTQLYANQAIEIDEQRRDHAVSAAQAEQA 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGH---AFTTFDAYWDKCLQMQMEPASILP-------PWR 172
+S NG + P + G FT F W K L + P PW
Sbjct: 123 VSCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEEGFVIHRAPAPRGEPLPWP 182
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ +D E LG + W G + A + L +F+EQ +L Y + R
Sbjct: 183 PLAERAWVD----ETLGELTTDPR---------WPVGEAEARRRLNDFLEQAVLDYGETR 229
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
TS+LSPYL G +S R+ L +Q L + ++ + +L + RE+
Sbjct: 230 DFPAIAGTSVLSPYLAAGIISPRQCVAAL--QQRLGYRPQS--KAQPGFVWLNELIWREF 285
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
R+L P + RP + PW D F AW +GRTGYP+VDA MR L TGW+H
Sbjct: 286 YRHLLVLIPTLSMNRPFKAETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMH 345
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +
Sbjct: 346 NRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFN 405
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P QG +FDP+GE++R W+ ELA +P ++H P D L+ G + +YP P++D
Sbjct: 406 PTTQGQRFDPQGEFIRTWVTELADIPAAYVHQPHD----WLRLKGRQ---DYPAPMVDHA 458
Query: 472 LGRER 476
+ R R
Sbjct: 459 VARVR 463
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 242/485 (49%), Gaps = 45/485 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPG---RVSRWWLKQSLSYL 62
+ WFRRDLR++D+ AL AA R ++ P RV W SL L
Sbjct: 5 ALCWFRRDLRLDDHAALHAALRHSERVICVFVFDRDILDHLPAQDHRVDFIW--HSLMEL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIK----ATKVVFNHLYDPVSLVRDHSIKEKL 118
+ L++LG++LV+ ++CI A+ A+ V + Y+P + RD ++ E+L
Sbjct: 63 KEHLRALGSDLVVASGRP-----VDCIPALAQEHGASTVWASRDYEPAACQRDAAVAERL 117
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ------MQMEPASILPPWR 172
G +++ +++E E+ G +T F Y + L+ +Q P++ R
Sbjct: 118 SRHGTRLETVKDQVIFEQDEVLTVNGKPYTVFTPYRNAWLKKLIPFFLQAYPSTRYLN-R 176
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGR-GWSPGWSNADKVLTEFVEQHLLRYYKN 231
L + A T S+ DLG D LGR G G + A V +F Q + Y +
Sbjct: 177 LARLAET-PLPSLADLGFTDTG-------LGRLGIRAGMAGAAAVFADF-GQRIEHYQQW 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R S LS +L FG +S+R++ Q W +G T +L + RE
Sbjct: 228 RDFPAAKGVSYLSVHLRFGTISIRQLAQFAWQ-----------QGSAGATTWLNELIWRE 276
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ + L +++P E + + D F AW GRTGYPLVDA MR+L +G++H
Sbjct: 277 FYQQLLWHYPHVVEESFKPEYRQLGFPNDDSLFVAWCAGRTGYPLVDAAMRQLEYSGYMH 336
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++ +SF VK LL+ WRWG +YF + L+D DL + GWQ+ + + D R+ +
Sbjct: 337 NRLRMVTASFLVKDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFN 396
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q KFDPEG+++R+++PELA + + IH PW A VL G LG +YP+PI+D
Sbjct: 397 PVTQSQKFDPEGKFIRRYVPELAALDNKAIHAPWQA--KVLP-GGFLLGRDYPRPIVDHA 453
Query: 472 LGRER 476
R R
Sbjct: 454 EQRTR 458
>gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
Length = 473
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 241/485 (49%), Gaps = 30/485 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSR----WWLKQSLSYL 62
+ W R DLRI+DN AL+AA G ++ P GQ+ + +WL+ +L L
Sbjct: 3 LTWLRSDLRIDDNTALSAATERGPTVALWLVSP---GQWRAHDDADCKVDFWLR-NLRDL 58
Query: 63 GQSLKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
Q+L+ L L++ K ++ A+L+ + V +N Y RD + ++ L
Sbjct: 59 RQALEKLNIPLLIRKIDTWDQAPQAVLDVCQQHQVQSVHWNEEYGINEQRRDAATRKLLE 118
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ + SY LL+ P I G F F + CL+ L QAA
Sbjct: 119 KASVQAHSYLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAALK 178
Query: 180 IDGCSI-EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I I +D+ D EK+ AL W G ++A + L++F+++ + Y K R
Sbjct: 179 IHSDPIPQDI---DGFEKTPRAL-REHWPAGEAHAQQRLSQFLDETIDDYLKTRDLPAMP 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE-GKESVTFFLRAMGLREYSRYLC 297
TS LSPYL G +S R QCL L A + F+ G V ++ + RE+ +++
Sbjct: 235 GTSQLSPYLAAGVISPR---QCL--HGALAANKGEFDSGSTGVQTWVNELLWREFYKHIL 289
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P + R S+ + PW G+ +AW QGRTG+P++DA MR+L TGW+HNR+R+
Sbjct: 290 TGYPQVSRHRAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRM 349
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+ F K LL+ WR G ++F L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 350 IVAMFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPVSQS 409
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+FDPEG ++R WLPEL + + IH P +K+ + G +Y PI+DL R+R
Sbjct: 410 QRFDPEGRFIRHWLPELRDIDEKTIHGP-------MKSTDLFAGNSYHNPIVDLGSSRQR 462
Query: 477 LTQAI 481
+A
Sbjct: 463 ALEAF 467
>gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum
JL354]
Length = 467
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/487 (31%), Positives = 242/487 (49%), Gaps = 37/487 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVW RRDLR+ DNPAL AAA+ G + PV+ + G G SRWWL SL L +S
Sbjct: 6 IVWLRRDLRLADNPALYAAAQAGPIIPVFVLDDERTGDRKYGDASRWWLHHSLESLARSF 65
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
A L+L + +S + L + + A+ + N Y+P +K+ L E G ++
Sbjct: 66 GRHNASLILRRGDS-VNILADLAAKTGASAIHANRHYEPWWRKAQGDLKKALPE-GCDLE 123
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCSI 185
++G+ L G + + + + ++ M P LP P + Q +
Sbjct: 124 LHDGNYLMPLGTATTGSGDPYKIYTPF-SRTMRDLMPPRDDLPAPETISQPGDLPPSDDL 182
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D L + S + + WS G A + L + + H+ Y + R + TS +SP
Sbjct: 183 ADWSLLPTNPDWSTEM-AKFWSIGEDAAHERLDWWAD-HVGEYDEGRNLPSVDQTSQMSP 240
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LH+GE+S +++ + K++ +G + + + R+Y++ + FP E
Sbjct: 241 HLHWGEISPVQIWHRM--------KDKRSDGWRT---YESELIWRDYAQNVLCQFPRYPE 289
Query: 306 ---RPLLSNLKYFP----WHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
R + + K + H +AW+ GRTGYP+VDAGMR+LWA GW+HNR+R+I
Sbjct: 290 ESYRDAIDDAKLWRNPNRGHVIQEELEAWQYGRTGYPIVDAGMRQLWAIGWMHNRVRMIA 349
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF +K LL+ WR G ++FWDTL+DAD + WQ+++G+ D + R+ +P Q K
Sbjct: 350 ASFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFPRIMAPLSQSEK 409
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWD-APPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
FD Y+R+W+PELA +P IH P D PN +YP II RER
Sbjct: 410 FD-AASYIREWVPELADLPDSEIHDPSDKCRPN-----------DYPAKIIGHKEARERA 457
Query: 478 TQAIFKM 484
+A M
Sbjct: 458 LEAYRAM 464
>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
Length = 501
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 236/490 (48%), Gaps = 37/490 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAA--RDGSVFPVYTWCPKEEGQF--YPGRVSRWWLKQSLSY 61
+VW R DLR+ DNPAL AAA R G V VY C +F P R+ + ++ L
Sbjct: 3 ALVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLD--FARRHLHL 59
Query: 62 LGQSLKSLGAELVLFKTEST---LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L L L + + AL + FN Y L RD + + L
Sbjct: 60 LTTELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLL 119
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---- 174
G++V+ + ++ P ++ +E G + F Y K LQ+ AS+LP R V
Sbjct: 120 RAQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQL----ASLLP-LRPVEAPA 174
Query: 175 -QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
QAA S +D+ E ++ + L W G + A L FV Q L Y R
Sbjct: 175 HQAALPCPSASAQDIDHLFEGQELRD--LSTPWPAGEAVARARLQRFVAQDLDHYQTQRD 232
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSPYL G LS R+ + +L ++ V+ ++ + RE+
Sbjct: 233 LPAVAGTSGLSPYLAIGALSPRQA-----LAAVLSRTGGDWNANAGVSTWISELIWREFY 287
Query: 294 RYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
++L ++P R + + + FPW +F WRQGRTG P++DA MR+L ATGW+HN
Sbjct: 288 QHLVVDYPQVCMHRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHN 347
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R++V+ F K L + WRWG +YF + L+D D + GWQ+ + + D R+ +P
Sbjct: 348 RLRMLVAMFLTKNLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNP 407
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
Q +FDP G+++R W+PELA + + IH P AP +G G YP P++DL
Sbjct: 408 ITQSQRFDPRGQFIRLWVPELAGLSDKAIHAPHLAP------SGPPPG--YPAPMVDLGA 459
Query: 473 GRERLTQAIF 482
R + T A+F
Sbjct: 460 SR-KATIALF 468
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 245/498 (49%), Gaps = 42/498 (8%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQ 57
M + + W RRDLRI DN LAAA R V V+ P P RVS ++
Sbjct: 1 MADDLVLFWHRRDLRIRDNLGLAAARKRTPKVVGVFCLDPGILNGDDIAPARVS--YMIG 58
Query: 58 SLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEK 117
SL+ L ++ +S G+EL++ K + A+ SA+ A V +N +P + RD ++
Sbjct: 59 SLAELQENYQSAGSELLILKGKPE-EAIPNLASALGAAAVYWNRDVEPYARERDPNVASA 117
Query: 118 LVELGI-SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP-------ASILP 169
L + I S Y LL P + G + + +W K ++ + +P A+ L
Sbjct: 118 LKDRDIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLS 177
Query: 170 PWR--LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH--L 225
P L AG ID + + LG E E+E LL PG + A L +F + +
Sbjct: 178 PHEKSLANKAGNIDLPTAKALGYEWENE----LLL----QPGEAAALAQLEKFCDDRRVI 229
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
Y + R TS LS L FG L +R V++ +++ + E ++ + +
Sbjct: 230 AEYDQQRDYPSIAGTSTLSAALKFGTLGIRTVWEA---ASDAYSRARSEETHRNIRTWQQ 286
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ + + + FP E P LK FPW D F+AW +G+TGYP+VDA MR+L
Sbjct: 287 ELAWREFYQSVMYTFPNLAEGPYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLN 346
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR R+IV+SF K L++ WRWG KYF L D DL + GWQ+ + S D
Sbjct: 347 QTGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKP 406
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
L R+ +P Q K+DPE EY+R+WLPE+ + T + + + +E G YP
Sbjct: 407 L-RIFNPASQAKKYDPEAEYIREWLPEIRHLDTGALVS------GKIDSNDLE-GTGYPC 458
Query: 466 PIIDLDLGRERLTQAIFK 483
++D + QAIFK
Sbjct: 459 KVVD-----HKEQQAIFK 471
>gi|406706534|ref|YP_006756887.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB5]
gi|406652310|gb|AFS47710.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB5]
Length = 474
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 239/473 (50%), Gaps = 30/473 (6%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFYPGRVSR-WWLKQSLSYL 62
+ IVW R D RI NPAL+ A ++ V +Y + PK F R ++ WW+ +SL
Sbjct: 4 KAIVWIREDFRINLNPALSHACQNHNEVVALYIFNPK---NFINKREAQLWWISKSLESY 60
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKA---TKVVFNHLYDPVSLVRDHSIKEK-L 118
+ L + L + K + +E +S IK + +N +Y+P + I++ L
Sbjct: 61 SKELSNFNINLEIQKGDE-----IEVLSKIKKKDNITLYWNKIYEPEIINLGKKIRDNIL 115
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME--PASILPPWRLVQA 176
++ I+ + + G++L E ++ + F F +W ++ + P+ ++ +
Sbjct: 116 LKNEINFKYFKGNILNEFQDVTKKDQTPFKVFTPFWRVAEEIYLNSVPSKNSKIKKMKKK 175
Query: 177 AGTI-DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
D + +DL +K+ + W + + +L + ++ + Y +R
Sbjct: 176 FNYFKDNINSKDLL----PKKNWYKKFDKYWKISENESQNLLNDLIKNKINNYGTDRDIP 231
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TS LSPY+ G++ V ++ K+ K +N K+ + +G RE+S
Sbjct: 232 SVSGTSKLSPYIKHGQIHVENIY-----KKCSEIKPKNINIKK----YTNELGWREFSHS 282
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L FP + L FPW + KAW+QG TGYP+VDAGMREL+ TGW+HNR+R
Sbjct: 283 LINYFPEMLKGNLRKEFDRFPWVKNDKFLKAWKQGMTGYPIVDAGMRELYETGWMHNRVR 342
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV SF VK L + W+ G K+F + LLD + ++ WQ+++G D R+ +P +Q
Sbjct: 343 MIVGSFLVKHLRIDWKEGEKHFRNCLLDFNEANNVAQWQWVAGCGADAAPYFRIFNPILQ 402
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
G KFD G YV++W+PEL ++P ++IH PW+ A +G NYPKPI+
Sbjct: 403 GEKFDKAGLYVKKWVPELNKVPEKFIHKPWEMDIKYQTALDTIIGKNYPKPIV 455
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 152/476 (31%), Positives = 230/476 (48%), Gaps = 19/476 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++W RRDLR D+ ALAAA R G V PV+ +++ G L L+
Sbjct: 6 LLWIRRDLRTTDHEALAAACKRGGPVIPVFI---RDDSVTGLGAAPALRLDLGLAAFAAR 62
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
LK G+ L+L ++ + L L + A V + LYDP ++ RD +K L E G+
Sbjct: 63 LKEKGSRLIL-RSGNPLEVLRDLAKETGAGAVYWQRLYDPAAIKRDSRVKTALREDGLDA 121
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EPW + +G + + +W + PA + P + D ++
Sbjct: 122 ESFAGHLLFEPWTVETGQGGFYKVYSPFWKAVRGRDVGPA-LSAPSDIPAPDAWPDSEAL 180
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D L + A++ +PG A + L F + Y R TS LS
Sbjct: 181 ADWQLS-APMRRGRAVVAAHVTPGEQAAQQQLALFARDRIADYKDQRDFPDREGTSDLSH 239
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+L GE+S R+ + W A EE G E+ FL+ + RE++ +L ++ P
Sbjct: 240 HLTVGEISPRQCWHAGWR-----ALEEGKPGAET---FLKEVVWREFAYHLMYHSPHILT 291
Query: 306 RPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
R + F W D AW+QGRTG VDA MREL+ TG +HNR R+IV+S+ K
Sbjct: 292 RNWREDWDGFDWREEDDARVLAWKQGRTGVAFVDAAMRELFVTGRMHNRARMIVASYLTK 351
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
+L+ W+ G +F D L+D D + +GWQ+++GS PD R+ +PE Q KFDP+
Sbjct: 352 HMLVHWKIGQAWFEDCLVDWDPASNAMGWQWVAGSGPDAAPYFRIFNPETQAEKFDPKAR 411
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y R+WL E P ++A P + G+ G P+ ++DL GRER A
Sbjct: 412 YRRRWLAEGQSDPGPEALSFYEAAP---LSWGLSPGDAPPRALVDLKAGRERALAA 464
>gi|421464977|ref|ZP_15913666.1| putative deoxyribodipyrimidine photo-lyase [Acinetobacter
radioresistens WC-A-157]
gi|400204906|gb|EJO35889.1| putative deoxyribodipyrimidine photo-lyase [Acinetobacter
radioresistens WC-A-157]
Length = 484
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 145/486 (29%), Positives = 239/486 (49%), Gaps = 37/486 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+VWFR+DLRI D+ AL A + G + T P + Q + + L L + L
Sbjct: 6 LVWFRQDLRIVDHSALWHARQTGPCIALVTLSPVQWQQHDDAMIKIDLYLRQLKVLKEQL 65
Query: 67 KSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEKLVELG 122
K L +++ + LLEC ++ ++ H+ ++ RD ++ L G
Sbjct: 66 KQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQI-HAHIEAGINEQQRDQDCQQLLDTSG 124
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I++ Y L+ I ++ G + F A+ C ++E A L + I
Sbjct: 125 IALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYS-RLEIA-------LPKCYTEITA 176
Query: 183 CSIEDLGLEDESEKSSNAL-----------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
+ L D+ ++++ + + + W ++A +L +F+E H+ Y+
Sbjct: 177 QNPITLPALDQFQQTAPDIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHVQHYHIE 236
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R + TS LS YL+ G LS+R+ Q L+ Q + E +E + +L + RE
Sbjct: 237 RDFPAHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPE----QEGQSIWLDELLWRE 292
Query: 292 YSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
+ +++ + FP + P +N + PW D AW+QG+TG P+VDAGMR+L ATGW+
Sbjct: 293 FYQHILYQFPNVSKYLPFKANAQNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLATGWM 352
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D R+
Sbjct: 353 HNRVRMITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIF 412
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
+P Q KFDPEG+Y+R W+PELA + + IH P++ + L+YPKPI+DL
Sbjct: 413 NPVSQSRKFDPEGQYIRTWIPELAHLDAKTIHAPYE--------SKTVQQLDYPKPIVDL 464
Query: 471 DLGRER 476
R R
Sbjct: 465 KYSRAR 470
>gi|395233419|ref|ZP_10411659.1| deoxyribodipyrimidine photolyase [Enterobacter sp. Ag1]
gi|394732146|gb|EJF31853.1| deoxyribodipyrimidine photolyase [Enterobacter sp. Ag1]
Length = 469
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 232/470 (49%), Gaps = 29/470 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLRI DN AL AA D V + P++ Q ++ + L LG
Sbjct: 5 LVWFRNDLRIHDNYALHAACLNPDAKVIGFFVVTPEQWRQHVMAPKQVEFIFEHLRALGH 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G EL + + + AA ++CI A K + +N+ Y+ RD ++ EK +
Sbjct: 65 ALAGRGIELHI-QQAADFAASIDCIKAFCVEQKVDALFYNYQYEVNERARDAAL-EKALN 122
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
+ ++VQ ++ LL P + + F + ++ E LP V A T
Sbjct: 123 VDVTVQGFDDSLLLAPGSVTTGNHEMYKVFTPFSKAFIRRLQEG---LP--ECVPAPKTR 177
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
C + D ++ + L + G A +L +F Q Y + R T
Sbjct: 178 GECDFNERFAFDMPREAFDREL---FPVGEPEAIGMLRKFCLQPATDYPEQRDFPAIEGT 234
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYL G LS R QCL ++L + EG+ T+ L + RE+ R+L +
Sbjct: 235 SRLSPYLATGVLSPR---QCL--HRLLKEHPKALEGEAGATW-LNELIWREFYRHLMVAY 288
Query: 301 P-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P +P ++ W + +AW+QG+TGYP+VDA MR+L TGW+HNR+R++V+
Sbjct: 289 PKLCRHQPFIAWTDKVRWSGNNAWLEAWQQGKTGYPIVDAAMRQLNQTGWMHNRLRMVVA 348
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +F
Sbjct: 349 SFLVKDLLIDWRQGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 408
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
D EG ++R WLPEL +P + IH PWD A + L+YP+PI+D
Sbjct: 409 DAEGNFIRHWLPELKTVPGKQIHSPWDW------ADKQKQTLDYPRPIVD 452
>gi|346992466|ref|ZP_08860538.1| deoxyribodipyrimidine photo-lyase [Ruegeria sp. TW15]
Length = 477
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 150/487 (30%), Positives = 239/487 (49%), Gaps = 31/487 (6%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
G + I+WFRRDLR+ D PAL AA R G + PV+ + + G +W L L
Sbjct: 4 GHSPIILWFRRDLRLRDYPALTAAVRSGRPIVPVFILDDQVQAL---GAAPKWRLGLGLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
++L +G+ L+L + + L L + I A V ++ YDP ++ RD IK L E
Sbjct: 61 AFAKALDQIGSNLIL-RRGTALRVLKDLIHETGAGAVFWSRAYDPKAINRDKHIKASLNE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM---EPASILPPWRLVQAA 177
GI V+S+ G LL+EPW I + G F F W + EP P R+ +
Sbjct: 120 QGIEVRSFAGHLLFEPWTIATKAGQPFRVFTPMWRSVSGRDVAMPEPT----PARIAKPD 175
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ D L+ + ++ + ++ PG + A L F+E ++ Y + R +L
Sbjct: 176 LWPASDRLSDWNLDRDMQRGAT-IVRPFVRPGEAAALDQLDRFLE-NIDHYQEARDRLDQ 233
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE--GKESVTFFLRAMGLREYSRY 295
TS LS YL GE+ R + W + +N + G FLR + RE++ +
Sbjct: 234 VGTSDLSEYLSLGEIGPRTI----------WHRVQNADRTGSRGGEAFLRQLVWREFAYH 283
Query: 296 LCFNFPFTHERPLLSNLKYFPWHAD--LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
L +++P FPW+ D +AW+ RTG PLVDAG+R+++ TG +HNR
Sbjct: 284 LMYHWPHLLTDNWKPEWDAFPWNTDPDTPEVRAWKLARTGVPLVDAGLRQMYVTGRMHNR 343
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+S+ K L+ W+ G +F + L+D D + +GWQ+++G PD R+ +PE
Sbjct: 344 ARMIVASYLTKHLMTHWKIGADWFAECLIDWDPAANAMGWQWVAGCGPDAAPYFRIFNPE 403
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q +FDP Y+++W+ E P+ + A P ++ G+ +Y P++ L G
Sbjct: 404 TQRERFDPHSTYLKRWIAEGRSDPSPTARAYFSAIP---RSWGLSHEDSYGAPVVGLKEG 460
Query: 474 RERLTQA 480
R R A
Sbjct: 461 RIRALDA 467
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 247/492 (50%), Gaps = 43/492 (8%)
Query: 9 WFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLGQS 65
W RRDLR++DN ALA A + + V ++ P E+ P RV +L L+ L ++
Sbjct: 8 WHRRDLRLQDNVALAEARQQSAKVVGIFCLDPAILEKEDVAPARVK--YLLACLAELAEN 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
+ G++L++F+ + L L + ++K V +N +P + RDH + L ++G +
Sbjct: 66 YQKAGSQLLIFQG-NPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQVGAKI 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASIL--------PPWRLVQA 176
+++ LL+ P +++ + ++ + +W Q + P + L +L +
Sbjct: 125 ETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDAEQKLAKD 184
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
G I ++ DLG +K +G S G L F E + +Y +R
Sbjct: 185 LGAIALPTLADLGFS--WDKPFTVPVGETASLG------QLDRFTENFIEKYDGDRNFPA 236
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L FG + +R V+Q + + E + V + + + RE+ ++
Sbjct: 237 TDGTSRLSAALKFGAIGIRTVWQA---TETALNHCRSKEAEAGVITWQQELAWREFYQHC 293
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
F FP + P K FPW D F+AW G+TGYP++DA MR+L TGW+HNR R+
Sbjct: 294 LFFFPELAQGPYREEFKDFPWENDEEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRM 353
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF K L++ WRWG KYF TL+D DL + GWQ+ + S D L R+ +P Q
Sbjct: 354 IVASFLTKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSASSGMDPKPL-RIFNPYTQA 412
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGL----NYPKPIIDLDL 472
KFDPE +Y+R WLPEL+ + T+ VL + L +YP+PI++ +
Sbjct: 413 QKFDPEADYIRHWLPELSGLDTQ-----------VLLTGQIPRLLCQQHDYPEPIVEHRV 461
Query: 473 GRERLTQAIFKM 484
R+R + ++K+
Sbjct: 462 -RQREFKRLYKL 472
>gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 497
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 152/503 (30%), Positives = 238/503 (47%), Gaps = 33/503 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYL 62
+VW R DLRI DN AL+AA +D +V V+ P E+ P + + +L ++L+ +
Sbjct: 14 LVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAA--FLLENLTSV 71
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L G L + A+ L++ + +AT + +N+ Y+ +RD +K++L
Sbjct: 72 QHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 131
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ + Y+ LL P + G + F + ++ +E + P A
Sbjct: 132 D-SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVP------APD 184
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
G I ++ + + G A + L F + + Y + R
Sbjct: 185 ARGEPIHNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFCREQVQDYDRQRDVPALPG 244
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCF 298
TS LSPYL G +S R+ F L + + E +E F + + RE+ R+L
Sbjct: 245 TSKLSPYLALGIVSPRQCFNRLRAE-----CPDMLERREGGAFTWFNELVWREFYRHLIV 299
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++P RP + ++ W + AW+QG+TGYP+VDA MR+L TGW+HNR+R+I
Sbjct: 300 SWPQLCKHRPFTAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNGTGWMHNRLRMI 359
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG
Sbjct: 360 CASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 419
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDPEG ++R WLPELA +P + IH P W A LNYP PI+D R+
Sbjct: 420 RFDPEGRFIRHWLPELAAVPDKDIHQPHRW--------ADKHHHQLNYPLPIVDHKTARQ 471
Query: 476 RLTQAIFKMWEMEAADNAMDSNG 498
A + ADN + NG
Sbjct: 472 NTLAAFEAAKNIGIADNDREENG 494
>gi|385872663|gb|AFI91183.1| Deoxyribodipyrimidine photolyase [Pectobacterium sp. SCC3193]
Length = 492
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 153/504 (30%), Positives = 236/504 (46%), Gaps = 35/504 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLR+ DN AL AA ++ +V V+ P + Q +L +L+ + Q
Sbjct: 9 VVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLDNLTLVQQ 68
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L G L + A+ L++ + +AT + +NH Y+ +RD +K++L +
Sbjct: 69 ALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQVKDRLTD- 127
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
+ Y+ LL P + G + F + ++ +E ++ P A +
Sbjct: 128 SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVP------APDVR 181
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G I + + + G A + L F + + Y + R TS
Sbjct: 182 GEPINNTVTFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGTS 241
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFNF 300
LSPYL G +S R+ F L + E E +E F + + RE+ R+L ++
Sbjct: 242 KLSPYLALGIVSPRQCFNRLRTE-----CPEMLERREGGAFTWFNELVWREFYRHLIVSW 296
Query: 301 PF-THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P RP + ++ W + AW+QG+TGYP+VDA MR+L TGW+HNR+R+I +
Sbjct: 297 PLLCKHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICA 356
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG +F
Sbjct: 357 SFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 416
Query: 420 DPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
DPEG ++R WLPELA +P + IH P W A LNYP+PI+D R+
Sbjct: 417 DPEGRFIRHWLPELAIVPDKDIHQPHRW--------ADKQHFKLNYPQPIVDHKTARQDT 468
Query: 478 TQAIFKMWEMEAADNAMDSNGTNE 501
A EAA N +N E
Sbjct: 469 LAAF------EAAKNIGMANNDRE 486
>gi|425744699|ref|ZP_18862754.1| putative deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
WC-323]
gi|425490295|gb|EKU56595.1| putative deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
WC-323]
Length = 480
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 154/498 (30%), Positives = 253/498 (50%), Gaps = 37/498 (7%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFY---PGRVSRWWLKQ 57
M ++WFR+DLRI+D+ AL A + G + P E+ Q + P ++ ++L+Q
Sbjct: 1 MSNAYQLLWFRQDLRIQDHAALWHATQAGPTIALVILSP-EQWQLHDDAPIKID-FYLRQ 58
Query: 58 SLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSL-----VRDH 112
L L L SL L L + S + E + + ++ H+Y + L RD
Sbjct: 59 -LQSLKHQLASLNIPL-LVHSISLWKDIPEYFATL-IQQLPIQHVYANIELGVNELKRDQ 115
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA-----SI 167
++++ L + + ++ L+ I ++ + F A+ C Q +++PA I
Sbjct: 116 AVQKLLNQQDKELTLFHDRTLFPVGSIRNQSNLPYQVFGAFKKTCYQ-RLQPALPQCYPI 174
Query: 168 LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
P + + I I+ L LE +K W G + A + L +F+E+ L
Sbjct: 175 PAPQQAITDLKLISSTDIKSLQLE--YQKHIQHPHDHEWQVGEAYALQQLDQFIEEQLSD 232
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGK-ESVTFFLRA 286
Y R TS LS YL+ G +S+R+ Q L+ A++ +F+ + ++ +L
Sbjct: 233 YKIARDFPARAGTSQLSAYLNIGIISIRQCLQALFR-----AQQGHFDIQSDAQQSWLDE 287
Query: 287 MGLREYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P + + PW D + W+QG+TG P+VDAGMR++
Sbjct: 288 LLWREFYQHILFDFPRVSRHLPFKQSTQNIPWRDDPVALQQWQQGQTGIPIVDAGMRQML 347
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
ATGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 348 ATGWMHNRVRMICAMFLSKNLLIDWRKGEQWFMQHLVDGDLAANNGGWQWCASTGTDSVP 407
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+R+WLPELA++ + IH P+ A L L+YP
Sbjct: 408 YFRIFNPVSQSQKFDPEGEYIRKWLPELAQLDKKTIHEPY--------AKKHSLALDYPH 459
Query: 466 PIIDLDLGRERLTQAIFK 483
PI+DL L R R + +FK
Sbjct: 460 PIVDLKLSRARAIE-VFK 476
>gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163]
gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163]
Length = 492
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 153/504 (30%), Positives = 236/504 (46%), Gaps = 35/504 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLR+ DN AL AA ++ +V V+ P + Q +L +L+ + Q
Sbjct: 9 VVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLDNLTLVQQ 68
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L G L + A+ L++ + +AT + +NH Y+ +RD +K++L +
Sbjct: 69 ALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQVKDRLTD- 127
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
+ Y+ LL P + G + F + ++ +E ++ P A +
Sbjct: 128 SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVP------APDVR 181
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G I + + + G A + L F + + Y + R TS
Sbjct: 182 GEPINNTVAFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGTS 241
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFNF 300
LSPYL G +S R+ F L + E E +E F + + RE+ R+L ++
Sbjct: 242 KLSPYLALGIVSPRQCFNRLRTE-----CPEMLERREGGAFTWFNELVWREFYRHLIVSW 296
Query: 301 PF-THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P RP + ++ W + AW+QG+TGYP+VDA MR+L TGW+HNR+R+I +
Sbjct: 297 PLLCKHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICA 356
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG +F
Sbjct: 357 SFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 416
Query: 420 DPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
DPEG ++R WLPELA +P + IH P W A LNYP+PI+D R+
Sbjct: 417 DPEGRFIRHWLPELAIVPDKDIHQPHRW--------ADKQHFKLNYPQPIVDHKTARQDT 468
Query: 478 TQAIFKMWEMEAADNAMDSNGTNE 501
A EAA N +N E
Sbjct: 469 LAAF------EAAKNIGMANNDRE 486
>gi|334703517|ref|ZP_08519383.1| deoxyribodipyrimidine photolyase [Aeromonas caviae Ae398]
Length = 474
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 233/488 (47%), Gaps = 39/488 (7%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A A D V ++ P + Q V + ++ + +G+
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIVSPTQWQQHKLAPVRQRFMLAQVDAMGRE 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AL + +++ N + L RDH++ L E G
Sbjct: 63 LAALGIPLHLLRVETFAEVPTALTALCRELGVSQLYANQAIEIDELRRDHAVSAALGEQG 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQ-----MQMEPASILPP--WR 172
++ +NG + P + G F F + W K L+ + PA P W
Sbjct: 123 MTSHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVIHRAPAPRGEPLPWL 182
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ +D GL + + + W G + A + L F++Q +L Y + R
Sbjct: 183 PLAEREWVDD------GLGELTADTR-------WPVGEAEASRRLHAFLDQAVLDYGETR 229
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
TS+LSPYL G +S R QC+ Q + + + L + RE+
Sbjct: 230 DFPALAGTSVLSPYLAAGIISAR---QCVGALQQRLGYRPQSKAQPGFVW-LNELIWREF 285
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
R+L P + RP PW D F AW +GRTGYP+VDA MR L ATGW+H
Sbjct: 286 YRHLLVLIPSLSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPVVDAAMRCLNATGWMH 345
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +
Sbjct: 346 NRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFN 405
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P QG +FDP+GE++R W+ ELA +P ++H P D L+ G + +YP P++D
Sbjct: 406 PTTQGQRFDPQGEFIRTWVTELADVPAAYLHEPHD----WLRLKGRQ---DYPAPMVDHA 458
Query: 472 LGRERLTQ 479
+ R R +
Sbjct: 459 VARVRAIE 466
>gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 470
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 232/480 (48%), Gaps = 30/480 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI DN AL A+++ + ++ P+ QF G S S++ +
Sbjct: 3 SVMWFRRDLRINDNKALYHASKENDLILLFQVNPE---QFISGSPSHQAFFSSVANFKKE 59
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+ ++F L L+ AI A KV FN RD + + I+
Sbjct: 60 IDKNAHLQIMFGEPIELLKRLK--DAIPAWDKVFFNQDETGYGAKRDKAARAFFEYNNIT 117
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP--ASILPPWRLVQAA-GTID 181
V +Y+ L+ E+ + F Y+ K + E S+L P +++ D
Sbjct: 118 VHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIKKELFPHD 177
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
E L ++D E L G A+ L F+++ L Y K R + TS
Sbjct: 178 EEQFEKL-IQDLPELDLKVL-------GEEAANTRLKNFIKRDLAEYAKARDIPDSDQTS 229
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS YL GE+S+R V+Q L + + E F + + R++ + +FP
Sbjct: 230 HLSRYLRTGEISIRTVWQAL----------QQTKPTEGRAIFEKELCWRDFYNMIYVSFP 279
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
P+ N ++ W + FK W++G+TGYPLVDA MR+L TGW+HNR+R+I +SF
Sbjct: 280 NQKNEPIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASF 339
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K LL+ WR+G KYF L+D D +I GWQ+ + + D R+ +P Q KFDP
Sbjct: 340 LTKDLLIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDP 399
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
G+++R+++ EL+ +P ++IH P + K + LG +YP PI+D +ER AI
Sbjct: 400 SGKFIRKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIVD---HKERRKLAI 456
>gi|402699638|ref|ZP_10847617.1| deoxyribodipyrimidine photolyase [Pseudomonas fragi A22]
Length = 481
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 150/487 (30%), Positives = 230/487 (47%), Gaps = 34/487 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLGQ 64
++W R DLR DN AL+AAA G VY P++ P +V +WL+ +LS L
Sbjct: 3 LIWLRSDLRQNDNTALSAAAERGPTVAVYLISPEQWLAHDDAPCKVD-FWLR-NLSVLSD 60
Query: 65 SLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL+ L L++ + A L+E + V N Y RD ++ L
Sbjct: 61 SLEQLNIPLLIRSAPAWDQAPAVLVELCQQLGIEDVHVNDEYGIHETRRDQAVARALDAK 120
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILP-PWRLVQAA 177
GI + LL++P + + G F F + C L + P P P + A
Sbjct: 121 GIGFHRHLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYERLHTGLPPIVATPRPQAQLTIA 180
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
S+ DE+ ++ W G A + L F ++ + Y + R
Sbjct: 181 RDAIAQSVSGFAPPDETLRAL-------WPAGEDEARQRLARFADEQIHYYKEERDLPAK 233
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE-GKESVTFFLRAMGLREYSRYL 296
TS LSPYL G +S R QCL L + FE G ++ + RE+ +++
Sbjct: 234 PGTSQLSPYLAAGVISPR---QCL--HAALLSNNGEFESGSVGCATWISELIWREFYKHI 288
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+P + R ++ ++ PW AW++GRTG P++DA +R+L ATGW+HNR+R
Sbjct: 289 LVGYPRVSRHRAFRADTEFLPWRDAPQELAAWKEGRTGIPIIDAAIRQLLATGWMHNRLR 348
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V+ F K LL+ WR G ++F L+D DL + GWQ+ S + D R+ +P Q
Sbjct: 349 MVVAMFLTKNLLIDWREGERFFMQHLIDGDLAANNGGWQWSSSTGTDSVPYFRIFNPLSQ 408
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGL-NYPKPIIDLDLGR 474
+FDPEG +++ WLPELA + + IH+P AG G+ +YP+PI+DL R
Sbjct: 409 SERFDPEGRFIKHWLPELATLNKKEIHNP--------AIAGGLFGVADYPRPIVDLKHSR 460
Query: 475 ERLTQAI 481
ER A
Sbjct: 461 ERALSAF 467
>gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
Length = 492
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 213/451 (47%), Gaps = 35/451 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFR DLRI DN ALA AA G V ++ E+ G +RWW +SL+ L +
Sbjct: 25 TIVWFRDDLRIRDNAALAWAADRGPVIGLFI---DEDQPRALGGAARWWRDRSLTLLVDA 81
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L + G L L ++ + L E + A V +N Y RD IK +L E G+ V
Sbjct: 82 LATHGVPL-LRRSGDPVVLLTEVVRETGAAAVTWNRRYHGPLRERDAEIKTQLREQGLEV 140
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
S+ G LL EPWE+ G + + + + E A+ L Q G +
Sbjct: 141 HSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDPMPAQLTGP--DTPV 198
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR--YYKNRQKLGGNSTSLL 243
D G D + A + PG A L +F+++ R Y R ++ TS L
Sbjct: 199 ADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADGRDEMARAVTSGL 258
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L FGE+SV +V++ +I A + F + + R+++ + + P
Sbjct: 259 SPHLRFGEISVHRVWE-----EITAAADAGDIDATDAQVFRKELLWRDFAWHRLYALPDM 313
Query: 304 HERPLLSNLKYFPWHADLGN----------------------FKAWRQGRTGYPLVDAGM 341
+ F W D AWR GRTG PLVDAGM
Sbjct: 314 ATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTGIPLVDAGM 373
Query: 342 RELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLP 401
RELWATG +HNR R++V+SF K L + WR G ++FW+TL+DAD + WQ+ +GS
Sbjct: 374 RELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGD 433
Query: 402 DGHELERLDSPEIQGSKFDPEGEYVRQWLPE 432
D R+ +PE Q KFDP+ Y+R+W+PE
Sbjct: 434 DASPYFRIFNPETQARKFDPDETYIRRWIPE 464
>gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
Length = 476
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 213/451 (47%), Gaps = 35/451 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
TIVWFR DLRI DN ALA AA G V ++ E+ G +RWW +SL+ L +
Sbjct: 9 TIVWFRDDLRIRDNAALAWAADRGPVIGLFI---DEDQPRALGGAARWWRDRSLTLLVDA 65
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L + G L L ++ + L E + A V +N Y RD IK +L E G+ V
Sbjct: 66 LATHGVPL-LRRSGDPVVLLTEVVRETGAAAVTWNRRYHGPLRERDAEIKTQLREQGLEV 124
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
S+ G LL EPWE+ G + + + + E A+ L Q G +
Sbjct: 125 HSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDPMPAQLTGP--DTPV 182
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR--YYKNRQKLGGNSTSLL 243
D G D + A + PG A L +F+++ R Y R ++ TS L
Sbjct: 183 ADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADGRDEMARAVTSGL 242
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFT 303
SP+L FGE+SV +V++ +I A + F + + R+++ + + P
Sbjct: 243 SPHLRFGEISVHRVWE-----EITAAADAGDIDATDAQVFRKELLWRDFAWHRLYALPDM 297
Query: 304 HERPLLSNLKYFPWHADLGN----------------------FKAWRQGRTGYPLVDAGM 341
+ F W D AWR GRTG PLVDAGM
Sbjct: 298 ATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTGIPLVDAGM 357
Query: 342 RELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLP 401
RELWATG +HNR R++V+SF K L + WR G ++FW+TL+DAD + WQ+ +GS
Sbjct: 358 RELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSGD 417
Query: 402 DGHELERLDSPEIQGSKFDPEGEYVRQWLPE 432
D R+ +PE Q KFDP+ Y+R+W+PE
Sbjct: 418 DASPYFRIFNPETQARKFDPDETYIRRWIPE 448
>gi|423205555|ref|ZP_17192111.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
gi|404623830|gb|EKB20679.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
Length = 473
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 231/488 (47%), Gaps = 39/488 (7%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW R DLR+ DNPAL A A D V ++ P + Q + + ++ + LG+
Sbjct: 3 LVWLRNDLRLADNPALRHACAGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDVLGRE 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AAL + T++ N + RDH++ LVE G
Sbjct: 63 LAALGIPLHLLRVETFAEVPAALADLCREQGVTQLYANQAIEIDEQRRDHAVSAALVEQG 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILP-------PWR 172
+ NG + P + G F F + W K L + P PW+
Sbjct: 123 VGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEEGFVIHRAPAPRGEPLPWQ 182
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ +D E LG + W G A + L F+EQ +L Y + R
Sbjct: 183 PLVERAWVD----EALGELTADPR---------WPVGEVEALRRLNIFLEQAVLDYGETR 229
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
TS+LSPYL G +S R+ L +Q L + ++ + +L + RE+
Sbjct: 230 DFPAIAGTSVLSPYLAAGIISPRQCVAAL--QQRLGYRPQS--KAQPGFVWLNELVWREF 285
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
R+L P + RP PW D F AW +GRTGYP+VDA MR L ATGW+H
Sbjct: 286 YRHLLVLIPTLSMNRPFKPETADLPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMH 345
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +
Sbjct: 346 NRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFN 405
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P QG +FDP+GE++R W+ ELA +P ++H P D L+ G + +YP P++D
Sbjct: 406 PTTQGQRFDPQGEFIRIWVTELADIPAAYVHQPHD----WLRLKGRQ---DYPAPMVDHA 458
Query: 472 LGRERLTQ 479
+ R R +
Sbjct: 459 VARVRAIE 466
>gi|86136341|ref|ZP_01054920.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
[Roseobacter sp. MED193]
gi|85827215|gb|EAQ47411.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
[Roseobacter sp. MED193]
Length = 470
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 147/477 (30%), Positives = 231/477 (48%), Gaps = 21/477 (4%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFR+D R+ D+ AL AA+ + V PV E Q Y G +W L +++ +
Sbjct: 8 IIWFRKDFRLADHQALFAASNSERPVIPVVVL--DELTQTY-GAAPKWRLSKAIEHFADR 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L +G+ L+L + + LL A + + YDP ++ RD +K L + G
Sbjct: 65 LNQVGSRLILRRGPAA-QELLALAQETGAGDIWWTRAYDPDAIARDTKVKSTLTDAGFKA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EPW + ++G F + W + + S P + + + +
Sbjct: 124 KSWPGQLLFEPWAVKTKQGGFFKVYSPMWRAVKDLDVAAPSPAPKFLMAPETWPVSD-PL 182
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L+ ++ + L G A+ L +F++ + Y + R N+TS LS
Sbjct: 183 QGWQLDKGMQRGARILSAHA-CVGEVAANTRLAQFLDVAIDGYKERRDYPALNATSGLSE 241
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
L +GE+ V+ + EG+ FL+ + RE++ +L F+ P +
Sbjct: 242 NLAWGEIGPATVWHA--------GLRAHLEGQRGAEHFLKELVWREFAYHLAFHTPKITQ 293
Query: 306 RPLLSNLKYFPW--HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
S FPW H D + W+QGRTG PLVDA MREL+ TG +HNR R+IV+SF
Sbjct: 294 ENWKSQWNDFPWSEHEDEAVLR-WKQGRTGVPLVDAAMRELYVTGHMHNRSRMIVASFLT 352
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K +L WR G K+F D L+D D + +GWQ+++G PD R+ +PE Q KFD E
Sbjct: 353 KHMLKHWRIGQKWFEDCLIDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKFDAEQ 412
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
+Y++++L E A P +DA P +A + YP PI+ L GR R A
Sbjct: 413 QYIQRFLAERAPTPGPEALAFFDACP---RAWALSKDDPYPTPIVGLAEGRHRALTA 466
>gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
Length = 468
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 159/492 (32%), Positives = 226/492 (45%), Gaps = 47/492 (9%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
R ++W R DLR+ DN AL AA G +Y P + P +V + ++L+ L
Sbjct: 2 RQLIWLRSDLRVRDNRALGAAMGAGPTLALYLLSPAQWRTHDDAPCKVD--FRLRNLAEL 59
Query: 63 GQSLKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L SLG L++ + ++ A L +V N Y RD +++ L
Sbjct: 60 SHGLASLGVPLLIRRVDTWDEAPALLTRLCHEQNIVRVHVNDEYGVHESRRDAAVERALQ 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ +Q + LL P + G +F F + C WRL +
Sbjct: 120 AQGVGLQRHLDQLLLAPDSLRTRSGGSFRLFAQFRRAC------------HWRLAVSLPA 167
Query: 180 IDGCSIEDLGLEDESEKSSNALLG---------RGWSPGWSNADKVLTEFVEQHLLRYYK 230
+ G + L AL G R W G A + L EFVE L Y +
Sbjct: 168 VGGLPMAQPPLNVVGNAVPAALEGFATPPESLRRLWPAGEIAAQRRLHEFVENRLAAYAE 227
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL +L + F+ E+ +F + R
Sbjct: 228 ARDFPAEPGTSRLSPYLAAGVLSPR---QCL--HAVL--RTGGFDRPEASAWFDELL-WR 279
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ P + R L + + PW AW+QGRTG+PL+DA MR+L ATGW
Sbjct: 280 EFYKHILAGHPRVSMGRALRTETEALPWRDAPQELAAWQQGRTGFPLIDAAMRQLLATGW 339
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 340 MHNRLRMVVAMFLSKNLLIDWRHGERWFMHHLIDGDLAANNGGWQWCASTGTDAVPYFRL 399
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDPEG ++RQWLPELA + IH AP L+ AG YP PI+D
Sbjct: 400 FNPLAQSRRFDPEGRFIRQWLPELASLDNRDIH----APAGALRPAG------YPPPIVD 449
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 450 LPSSRERALAAF 461
>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
Length = 464
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/478 (30%), Positives = 241/478 (50%), Gaps = 36/478 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+ W RRDLR+ DN AL+ R V PV+ + P RVS ++ +L L +S
Sbjct: 3 VHWHRRDLRVADNRALS---RGSPVLPVFVFDGAVLSHAAPPRVS--FMLSALESLRESY 57
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ G +L++ + + + +A A +VV+N Y ++ RD +++ L + GI +
Sbjct: 58 RERGGDLLVLRGDPR-EEIPRIAAAADADRVVWNRDYSGLAKERDADVRDALSDAGIERR 116
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-----PASILPPWRLVQAAGTID 181
+++ LL+ P I +G ++ + +W K + P I+ P +V+ I+
Sbjct: 117 AFHDALLHTPGSITTNQGDYYSVYTYFWKKWRDGAKDAPFDAPDEIVVPDEVVEEG--IE 174
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ DLG ED + A G A +L+ F E + RY K R STS
Sbjct: 175 IPTLADLGFEDPEAEIPPA--------GTEAARDLLSAFCEDDVYRYDKARDYPARESTS 226
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP+L FG + +R+V++ + E+ + ESV F + RE+ ++ + P
Sbjct: 227 RLSPHLKFGTVGIREVWEATERAK---DAAESEDAAESVEEFQGQLAWREFYAHVLDDTP 283
Query: 302 FTHERPLLSNLKYF----PWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++ N K + W D +AW+ G TGYP+VDAGMR+L W+HNR+R+I
Sbjct: 284 SV----VVENYKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLREEAWVHNRVRMI 339
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
++SF K LL+ WR G ++ L+D D D GWQ+ + + D R+ +P QG
Sbjct: 340 IASFLTKDLLVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPTTQGE 399
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDP+ EY+++++PELA +P + +H + P+ + EL +YP PI+D RE
Sbjct: 400 RFDPDAEYIKRFVPELADVPPKTVHEWTELDPDERR----ELAPDYPDPIVDHSERRE 453
>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
Length = 482
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/485 (31%), Positives = 238/485 (49%), Gaps = 29/485 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLRI DN LAAA R S V +C + P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNIGLAAA-RHLSQKVVGIFCLDFNILQRDDVAPARVA--YMIGCLQEL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ G++L++ + E T + + A++A V +N +P S RD ++ L + G
Sbjct: 63 QRRYLEAGSQLLILQAEPT-QGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQAG 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGTID 181
I V+++ LL+ P EI G +T + +W + + + EP LP L Q G +
Sbjct: 122 IKVENFWDQLLHAPDEIRTGMGTKYTVYTPFWKNWVSKPKAEPVDTLPIMSLEQLTG-LT 180
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKNRQKL 235
E L S LG W+ PG A + L +F ++ + Y K R
Sbjct: 181 AKEQEIAKLSGTIRLPSAKELGFVWNAPLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFP 240
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
+ TS LS L FG + +R V+Q + K + ++ + + + RE+ ++
Sbjct: 241 ALDGTSQLSAALKFGAIGIRTVWQA---TVTVMEKCHTEAARINIQTWQQELAWREFYQH 297
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+NFP K FPW + F+AW +G+TGYP++DA MR++ TGW+HNR R
Sbjct: 298 AMYNFPELANGAYREAFKDFPWDNNQELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNRCR 357
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D L R+ +P Q
Sbjct: 358 MIVASFLTKDLIINWQWGEKYFMQNLIDGDLSANNGGWQWSASSGMDPKPL-RIFNPFTQ 416
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE-LGLNYPKPIIDLDLGR 474
G KFDP+ EY+R+W+PEL WI A K +E + YP+PI+D + +
Sbjct: 417 GQKFDPKSEYIRKWVPEL-----RWID---TASLLAGKITPIERRSIGYPEPIVDHNQQQ 468
Query: 475 ERLTQ 479
R +
Sbjct: 469 RRFKE 473
>gi|334344458|ref|YP_004553010.1| DNA photolyase FAD-binding protein [Sphingobium chlorophenolicum
L-1]
gi|334101080|gb|AEG48504.1| DNA photolyase FAD-binding protein [Sphingobium chlorophenolicum
L-1]
Length = 458
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 241/480 (50%), Gaps = 37/480 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++W R+DLR+ D ALAAA R+G V PVY + Q+ G SRWWL SL+ L S
Sbjct: 5 VLLWLRQDLRLADQAALAAAVREGPVIPVYVLDDQAPRQWKMGGASRWWLHHSLANLDAS 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G+ L+L + +S + L+ + A +V H Y+P R+ EK V + +
Sbjct: 65 LREKGSRLILRQGDS-VEQLVAIAEEVGAGRVHALHHYEP--WWRN---AEKAVAKRLDL 118
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCS 184
++G LL P + G ++ + + + + QM PA+ + P R+ + S
Sbjct: 119 CLHDGGLLLPPGVVRTGGGSSYRIYTPF-ARAVMEQMPPATPVRAPSRIDAPSDWPKSDS 177
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D GL + A W+PG + A + F+++ Y R TS LS
Sbjct: 178 LADWGLLPVKPDWAVAF-SSDWTPGEAGARTNVAAFLDE-AADYDVARNLPSQEGTSRLS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LHFGE+S V+ + + T FL+ + R+Y+ + P
Sbjct: 236 PHLHFGEVSPAYVWHRI------------VGTGDDATTFLKELIWRDYAHTQIWAMPTYG 283
Query: 305 ERPLLSNLKYFPWHADLG----NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PW DL +FKAW+ GRTGYP+VDAGMR+LWATGW+HNR+R+I +S
Sbjct: 284 SENARPAFDAMPWR-DLREAGEDFKAWQSGRTGYPIVDAGMRQLWATGWMHNRVRMIAAS 342
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F +K LL+ WR G ++FWDTL+DA + + WQ+++GS D + R+ +P Q KFD
Sbjct: 343 FLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFD 402
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
G Y+R W+PELA + E IH P A G+ +YP I GRER A
Sbjct: 403 AAG-YIRTWVPELAHLDDEHIHDP--------DAHGIR-PPDYPAKRIGHREGRERALAA 452
>gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
Length = 463
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 232/485 (47%), Gaps = 37/485 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
I+W RRDLR+ DNPAL AA+ G V VY + G SRWWL SL L +SL
Sbjct: 6 ILWLRRDLRMADNPALYHAAKAGPVVCVYVLDDEAPEHHRMGGASRWWLHHSLESLSKSL 65
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ A+L+L + ++ + L +A+ A + N Y+P +K++ I +Q
Sbjct: 66 GTRNAKLILRRGDA-VEELTTVANAVGADTIHANTHYEPWWRKAQKKLKDE-----IDLQ 119
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCSI 185
Y+G L+ + G + + ++ K L+ ++ P +LP P L +
Sbjct: 120 LYDGVYLFPAGHVTTGSGDPYKIYTPFY-KALRQELPPRDVLPEPETLSSPDDWPASDEL 178
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D L S + W G A + L+E+ E H+ Y R + TS LSP
Sbjct: 179 ADWNLLPTKPDWSGGI-ADFWEVGEDAAHERLSEW-EDHVADYEDKRNFPSVDKTSRLSP 236
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+S +V+ L K + +G S F + R+Y+ + +P
Sbjct: 237 HLHFGEISPVQVWHAL--------KHKRSDGWNS---FESELIWRDYAANVICEYPAYAS 285
Query: 306 RPLLSNLKYFPW------HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+ W + K W++G+TGYP+VDAGMR+LW TGW+HNR+R+I +
Sbjct: 286 ENYREDYDKLEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRVRMITA 345
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF +K LL+ WR G ++FWD L+DAD + + WQ+ +G+ D + R+ +P Q KF
Sbjct: 346 SFLIKHLLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLTQSEKF 405
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D Y+R+++PELA + +IH P L YP +I GRER
Sbjct: 406 D-AAAYIREYVPELADLDEPYIHDP---------EEHGRLPKAYPAKMIAHKEGRERAMS 455
Query: 480 AIFKM 484
A M
Sbjct: 456 AYKDM 460
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 153/477 (32%), Positives = 237/477 (49%), Gaps = 35/477 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLRI DN LA A + S V V+ P E P RV+ ++ SL L
Sbjct: 5 VLFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILERDDVAPVRVT--YMIGSLQEL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
Q G++L++ + + + A+ A+ A V +N +P S RD +I L + G
Sbjct: 63 QQRYVQAGSQLLILRGDP-VQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDKG 121
Query: 123 ISVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASIL--------PPWR 172
I ++N D +L+ P EI +T + +W + + +P L
Sbjct: 122 IQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQE 181
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
L Q AG + +DLG +++ +PG + A L EF + + Y + R
Sbjct: 182 LAQKAGVKALPTAKDLGFFWDADLII--------APGEAAAQAKLAEFTAKAITEYQEQR 233
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
G N TS LS L FG + +R V+Q ++ + ++ E E S+ + + + RE+
Sbjct: 234 NFPGVNGTSQLSAALKFGVIGIRTVWQTT-LEALENSRSE--ETTTSIRTWQQELAWREF 290
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
++ +NFP + + K FPW + +F+AW +G+TGYP+VDA MR++ +GW+HN
Sbjct: 291 YQHAMYNFPELADGAYRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHN 350
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R R+IV+SF K LL+ +WG KYF L+D DL + GWQ+ + S D L R+ +P
Sbjct: 351 RCRMIVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL-RIFNP 409
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDP+ EY+RQW+PEL M TE++ P + Y KPI+D
Sbjct: 410 ASQSQKFDPDAEYIRQWVPELRSMDTEYLVTGKITPLE-------RHAVGYVKPIVD 459
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 159/478 (33%), Positives = 222/478 (46%), Gaps = 36/478 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I WFRRDLR+ DNPAL+AAA V PVY P + +L L L
Sbjct: 3 IHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRALDA 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ G L++ E +A LL ++ A+ V +N Y P S RD +I+ L G +
Sbjct: 63 QLQHHGLRLIVRHGEP-VATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALHAAGCA 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAY------WDKCLQMQMEPASILPPWRLVQAAG 178
VQ + + P +I + ++ + Y W ++ A IL P R + +
Sbjct: 122 VQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQPCRDLPVSH 181
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+I DL L + L A +L EF L Y R
Sbjct: 182 -----AIPDL-LAPHPLPPAGEL----------AAQTILDEFTRTSLRTYATQRDLPAVP 225
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSPYL FG ++VR QCL A + G + T+ + + R++ + F
Sbjct: 226 GTSRLSPYLRFGMIAVR---QCL-------AVAQAHPGPGADTW-IAELAWRDFYIQVLF 274
Query: 299 NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+ P W D F AW G TGYP+VDA MR+L GW+HNR R+IV
Sbjct: 275 HHPHVLRGAFKPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIV 334
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF K LL+ WRWG +YF LLD D + GWQ+ + + D R+ +P QG K
Sbjct: 335 ASFLTKDLLIDWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQK 394
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
FDP G+Y+R++LPELA +P IH P + AGV +G +YP P++D RER
Sbjct: 395 FDPHGDYIRRYLPELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRER 452
>gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49725]
gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49725]
Length = 445
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 146/443 (32%), Positives = 220/443 (49%), Gaps = 33/443 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAA-----RDGSVFPVYTWCPKEEGQFYP-----GRVSRWWL 55
+++WFR DLR+ DN AL AA ++GS + E YP G + WW
Sbjct: 3 SLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPA--YPSTRPLGGATHWWR 60
Query: 56 KQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIK 115
++SL L Q L S G +L L T + + A V +N Y D +K
Sbjct: 61 ERSLHALAQELASRGVKL-LRATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDARVK 119
Query: 116 EKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQ 175
L + GI+ S G L EPWE+ + +G+ + F + + Q+ LP L+
Sbjct: 120 ATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPF-AAAARSQLADEEPLPVPELL- 177
Query: 176 AAGTIDGCSIEDLGLEDESEKSS-NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
AG G S +++ A L + W+PG + A + L + L Y + R
Sbjct: 178 -AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQL---DLAHYAEERDI 233
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
N+TSLLSP+L FGE+S R+V+ + A+E + E +S + R+++
Sbjct: 234 PARNATSLLSPHLRFGEVSPREVW-------VAAAEEPDAEKFQSELLW------RDFAW 280
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ ++ P R + F W + K W++G TG PLVDAGMRELW TG++HNR+
Sbjct: 281 HRLYHLPDLATRNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRV 340
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R++V SF K L + WR G ++FWDTL+DAD + WQ+++G D R+ +PE
Sbjct: 341 RMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPET 400
Query: 415 QGSKFDPEGEYVRQWLPELARMP 437
Q +FDP+G Y+RQW P L+ P
Sbjct: 401 QAQRFDPDGAYIRQWAPTLSAPP 423
>gi|338986465|ref|ZP_08633502.1| Deoxyribodipyrimidine photo-lyase [Acidiphilium sp. PM]
gi|338206606|gb|EGO94705.1| Deoxyribodipyrimidine photo-lyase [Acidiphilium sp. PM]
Length = 263
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 162/263 (61%), Gaps = 11/263 (4%)
Query: 220 FVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES 279
F+ Y + R G TS LSP+LH+GE+++ V W G+++
Sbjct: 3 FLADGFGEYDRQRDLPGIAGTSGLSPHLHWGEIAIDAV----------WRAAVAAPGRDA 52
Query: 280 V-TFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVD 338
FL+ + RE++ YL ++ P RP+ + PW + AW+ GRTG P+VD
Sbjct: 53 ARQTFLKELIWREFAAYLLWHTPDLATRPMKAQFAAMPWRESAADLAAWQHGRTGVPIVD 112
Query: 339 AGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISG 398
AGMR+LW TGW+HNR+R+IV+SF VK LLLPW+ G ++F D L+DAD + WQ+++G
Sbjct: 113 AGMRQLWQTGWMHNRVRMIVASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAG 172
Query: 399 SLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE 458
S D R+ +P +QG KFDP+G YVR+++PE+A +P +++H PW+AP VL+ AGV
Sbjct: 173 SGADAAPYFRIFNPVLQGRKFDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVR 232
Query: 459 LGLNYPKPIIDLDLGRERLTQAI 481
LG +YP+P++DL GRER A
Sbjct: 233 LGASYPRPVVDLAEGRERALAAF 255
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 231/447 (51%), Gaps = 31/447 (6%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LA A + + V+ P + P RV ++ L+ L
Sbjct: 6 LFWHRRDLRITDNIGLATAFEKSRKLVGVFCLDPNILKGADIAPARVK--YMLGCLAELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
++ +G++L + E A+ + +A++A V +N +P S RD +++ L E GI
Sbjct: 64 ENYAKIGSQLFILFDEPR-QAIAQLATALQAQFVYWNLDIEPYSQDRDQAVRSALKEQGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILP-PWRLVQA----- 176
+V+++ LL+ P EI G+ +T + +W + Q + EPA L L +A
Sbjct: 123 AVETFWDQLLHFPGEICSNTGNPYTVYTPFWKNWIRQTKAEPAPGLEQAISLTEAEQERA 182
Query: 177 --AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
AG + +++DLGL N L+ PG S A L EF ++ + Y + R
Sbjct: 183 KNAGEVALPTLKDLGL-----SWDNPLM---LEPGESAARSQLEEFSDRTIYDYDEQRNF 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEE--NFEGKESVTFFLRAMGLREY 292
TSLLS L FG + +R V+ L A E+ + E ++ V + + + RE+
Sbjct: 235 PAVPGTSLLSAALKFGAIGIRTVWNA-----TLNAAEQCRSDETRKGVQTWQQELAWREF 289
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+ ++FP P K FPW + F AW QG+TGYP+VDA MR+L TGW+HN
Sbjct: 290 YQQALYHFPELATGPYRDTWKDFPWENNEELFHAWCQGQTGYPIVDAAMRQLNETGWMHN 349
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R R+IV+SF K L++ W+WG +YF L D DL + GWQ+ + S D L R+ +P
Sbjct: 350 RCRMIVASFLTKDLIINWQWGEQYFMQKLYDGDLAANNGGWQWSASSGMDPKPL-RIFNP 408
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTE 439
Q KFDPEG+Y+R+W+ EL M TE
Sbjct: 409 TTQTQKFDPEGDYIREWVSELRSMETE 435
>gi|385787736|ref|YP_005818845.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
Ejp617]
gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
Ejp617]
Length = 477
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 235/488 (48%), Gaps = 36/488 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VW R DLRI DN AL AA R +V ++ P + P + W QSL +
Sbjct: 5 LVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIW--QSLQDV 62
Query: 63 GQSLKSLGAELVLFKTE---STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
QSL + G L + + + +++ L E + ++ +N+ Y+ RD +++ L
Sbjct: 63 QQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERTLQ 122
Query: 120 ELGISVQSYNGDLLYEPWEIYD---ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
+ VQ ++ LL P + E FT F + K LQ + P + P V+
Sbjct: 123 HDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGL-PECLPAP--AVRP 179
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
G ++ + + L+ E L G + L EF +Q + Y R
Sbjct: 180 GGAVEARADSLVALDYPREDIDAGLFPSGEKAAIAR----LREFCQQAVADYPDKRNLPA 235
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL G LS R+ L +KQ A E++ V +L + RE+ R+L
Sbjct: 236 CDGTSRLSVYLATGVLSPRQCLHRL-LKQHPGALEDS-----RVFVWLNELIWREFYRHL 289
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP +P + K W D AW+QG+TGYP+VDA MR+L + GW+HNR+R
Sbjct: 290 LVAFPALCRHQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLR 349
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 350 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 409
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G +FD +GE++R WLPEL +P E+IH P W A L+YP+P++D L
Sbjct: 410 GERFDKDGEFIRHWLPELRHVPPEYIHQPHQW--------ARKNRQTLDYPQPLVDHKLA 461
Query: 474 RERLTQAI 481
R++ A
Sbjct: 462 RQQTLDAF 469
>gi|336451322|ref|ZP_08621760.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
gi|336281693|gb|EGN74965.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
Length = 497
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 161/490 (32%), Positives = 237/490 (48%), Gaps = 29/490 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQ-SLSYLGQ 64
+VWF++DLR+ DN A+ A ++ S + + +W L Q L+ LG
Sbjct: 3 ALVWFKQDLRLLDNDAVLHACKNNSAIRFLVTPTLSQFAEHHWAAIKWDLYQRQLNELGF 62
Query: 65 SLKSLGAELVLFKTE--STLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKL-VE 120
L LG L + K + S A L+ A + T V FN Y + RD + E L +
Sbjct: 63 DLAELGHSLEVVKLDRFSQCAEFLQQYCAEQGITDVYFNRDYALDEVRRDKEVAETLQAK 122
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH---AFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
G++V S++ +LL P +I + +G FT F W K ++ PA ++
Sbjct: 123 NGLTVHSFDSNLLVPPEQIKNGKGEYYKVFTPFFKVWLKYIREHGVPAPYPRCALKIEGI 182
Query: 178 GTIDGCSIEDLGL-EDESEKSSNAL----LGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ +L L +D+S N + + W G +N K EFV + + Y R
Sbjct: 183 EGVGAYKTTELDLPKDKSNLPGNRIGQLKSSKKWLVGEANLRKKTQEFVRELVDDYKAKR 242
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLRE 291
+ TS LS Y G LS R L E EG + +L + RE
Sbjct: 243 DFPAIDGTSTLSAYFEIGALSPRVAVHLLQR-----VSPEFPEGLSDGAYTWLSELAWRE 297
Query: 292 YSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
+ ++L F+ P P + FPW D F AW +GRTG+P+VDAGMR+L ATGW+
Sbjct: 298 FYQHLMFHEPRLAMGEPFQAEQSAFPWVNDKAQFVAWSEGRTGFPIVDAGMRQLNATGWM 357
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR+R+IV+SF VK L + W+WG +YF L+D + GWQ+ +G+ D R+
Sbjct: 358 HNRVRMIVASFLVKDLHINWQWGEEYFMQRLIDGSFPANNGGWQWSAGTGTDAAPYFRVF 417
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGV---ELGLN--YPK 465
+P QG KFDP+G Y+R+W+ EL +P++ IH+ P LK G+ E N YPK
Sbjct: 418 NPTSQGEKFDPDGNYIRKWVEELRDVPSKHIHN----PHAYLKQQGMFAEEKAANETYPK 473
Query: 466 PIIDLDLGRE 475
PI+D RE
Sbjct: 474 PIVDHKQARE 483
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 151/480 (31%), Positives = 241/480 (50%), Gaps = 37/480 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN AL++A D V ++T P++ P +++ +L Q+L L
Sbjct: 9 LVWFRNDLRVMDNKALSSACSDPQAKVLALFTATPEQWRAHDVSPRQIT--FLHQNLIEL 66
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
SL LG L+ T L+A +L+ +A + FNH Y+ RD + ++
Sbjct: 67 RDSLAKLGIPLICQTTPDFLSAAQWVLDFAEQQQADALFFNHQYELNERNRDEWLIKQ-- 124
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAG 178
+ V +++ LL P + +++G + + + + Q+ + +P ++ G
Sbjct: 125 QPSFRVHAFDDALLLPPKSVSNQKGEMYQVYTPFRRAFVTQLTVTDFRSVPA---PKSRG 181
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I + L E ++ + + + G A + L F + Y +NR +
Sbjct: 182 AILSIEKQQLLFEHDAVE-----IAAHFPSGEVAALQRLRLFCRERAQDYQQNRDIPSLD 236
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLC 297
TS LSPYL G LS R QCL ++L F+ +S +F +L + RE+ +L
Sbjct: 237 GTSQLSPYLAVGVLSPR---QCL--NRLLTENPHTFDSPDSGSFTWLNELIWREFYHHLL 291
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP +P + K+ W++ +F AW+ G TGYP+VDA MR+L TGW+HNR+R+
Sbjct: 292 VAFPHLCRHQPFIEWTKHIQWNSSDTDFNAWKNGLTGYPIVDAAMRQLNTTGWMHNRLRM 351
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D L + GWQ+ + + D R+ +P QG
Sbjct: 352 ITASFLVKDLLIDWRRGEQYFIQQLIDGTLAANNGGWQWSASTGIDASPWFRIFNPTTQG 411
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIH--HPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
KFDP+G++VR WLPEL +P ++IH H W A + L+YP PI+D R
Sbjct: 412 KKFDPDGKFVRHWLPELRTVPDQYIHTPHEW--------AESTRVILDYPTPIVDHKQAR 463
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/483 (31%), Positives = 238/483 (49%), Gaps = 30/483 (6%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+ W RRDLR+ DN LAAA R V ++ + P V +L L L ++
Sbjct: 5 LFWHRRDLRLNDNLGLAAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQALQEA 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
+ LG ++F+ + L + + A V ++ +P RD ++ L E GI+V
Sbjct: 65 YRRLGGSFLIFRGDPR-QILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAALKEKGIAV 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPAS----ILPPWRLVQA-AGT 179
++ LL+ P I ++G +T + +W + + EP S + P + QA AGT
Sbjct: 124 ETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTEIEQATAGT 183
Query: 180 IDGCSI---EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+ + +DLG S + +L +PG + A L F++QH+ Y + R
Sbjct: 184 LGAICLPTAKDLGFH----WSGDLIL----APGEAAAQAQLETFIDQHIQDYGEQRNYPA 235
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
TSLLSP L FG + +R+V+ EE + S+ + + + RE+ ++
Sbjct: 236 QPGTSLLSPALKFGVIGIRRVWTATQAAMAAARSEE---AQRSIRTWQQELAWREFYQHA 292
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+ FP ERP FPW + +F AW +GRTGYP+VDA MR+L TGW+HNR R+
Sbjct: 293 LYWFPHLAERPHREGFATFPWLNNEAHFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRM 352
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF K L++ +WG +YF L+D DL + GWQ+ + S D L R+ +P Q
Sbjct: 353 IVASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKPL-RIFNPASQA 411
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDPE EY+R+WLPE+ + T + N+ G YP PI+D ++R
Sbjct: 412 QKFDPEAEYIRRWLPEVRSLDTIDL-----VTGNISPLERHRCG--YPLPIVDHRQQQQR 464
Query: 477 LTQ 479
Q
Sbjct: 465 FKQ 467
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
Length = 495
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 147/502 (29%), Positives = 242/502 (48%), Gaps = 34/502 (6%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+T+VWFRRDLR D+ AL A R G V+ + + + ++ SL L
Sbjct: 6 KTLVWFRRDLRSFDHAALHHALRQGRQVYCAFIFDRAILDELPSTDRRVEFIHASLQELD 65
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+L++LG L++ + A+ + + + V NH Y+P ++ RD ++ L G
Sbjct: 66 TALRALGGGLIVRHARAE-QAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALATDGR 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILPPWRL------- 173
+Q+Y +++E E+ + G F+ F Y W K L ++ PA +P + +
Sbjct: 125 KLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPAD-MPAYEIDTLRAHF 183
Query: 174 VQAAGTIDGC-SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ G ++ +LG E + N G + +F+++ + Y R
Sbjct: 184 APLPANLSGIPALSELGFEKTNLTELNI------PTGMQGGQALFDDFIDR-MPDYDSTR 236
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
S LS +L FG +S+R + + + A G +L + R++
Sbjct: 237 DFPAVKGPSYLSVHLRFGTVSIRALVRRALDAMRIGA------GGTGAAVWLSELVWRDF 290
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPW----HADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
+ + P ER + W HA+ F+AW GRTGYPLVDA M +L TG
Sbjct: 291 YFMILYQHPHVRERAFKPDYDAIIWENGPHAE-ELFQAWCDGRTGYPLVDAAMAQLNQTG 349
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
++HNR+R++ +SF +K L + WRWG +YF + L D DL + GWQ+ S S D R
Sbjct: 350 YMHNRLRMVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFR 409
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
+ +P Q KFDP+G+++R++LP+L ++ + IH PW P L+ AG+ LG +YP P++
Sbjct: 410 IFNPLTQSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLL 469
Query: 469 DLDLGRER--LTQAIFKMWEME 488
D R R L A+ K +E
Sbjct: 470 QHDEARARTLLRYAVVKKVTVE 491
>gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 474
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 237/491 (48%), Gaps = 42/491 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFRRDLR DN A AA V + P Q + + +K+ L L
Sbjct: 3 LVWFRRDLRTIDNTAFIAAINSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFELQND 62
Query: 66 LKSLGAELVLFKTE---STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L SLG L+ +T S++ + + T V N Y+ + RD ++ L L
Sbjct: 63 LASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALTRLD 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTID 181
+ + ++ + P + +++GH F F Y LQ ++ P + + +D
Sbjct: 123 VVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFPVQVQKVTAVNGQKAKVD 182
Query: 182 GCSI--EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
C + +D +E+S + + L FV++H Y R
Sbjct: 183 ECDLFSKDCSFRYPTEES------QAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIEG 236
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF-EGKESVTFFLRAMGLREYSRYLCF 298
TS LSPYL G LSVR QC M ++L+ + EG+++ +L + RE+ ++L +
Sbjct: 237 TSRLSPYLAIGALSVR---QC--MARLLYQQTAPLSEGRQT---WLSELIWREFYQHLLY 288
Query: 299 NFPFTHERPLLSNLKYFPWHADLG------NFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
P L + PW L KAW+QG+TGYP+VDA MR+L TGW+HN
Sbjct: 289 FEP-----KLSRGESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHN 343
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R+IV+SF VK L + WR G YF L+D + + GWQ+ + + DG R+ +P
Sbjct: 344 RLRMIVASFLVKDLQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
QG +FDP+GE+VR+W+PELA +P + IH P K V+ G +YP PI+D +
Sbjct: 404 TTQGERFDPKGEFVRRWVPELADLPDKQIHQP-------SKWLSVK-GSSYPAPIVDHKV 455
Query: 473 GRERLTQAIFK 483
RE +T A +K
Sbjct: 456 QRE-ITLANYK 465
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 227/475 (47%), Gaps = 17/475 (3%)
Query: 7 IVWFRRDLRIEDNPAL--AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I WFRRDLR+ DNPAL AAA G V P++ G ++ +L L
Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
SL++ G+ LV+ + + L + + A A V +N Y P + RD I+ L +L ++
Sbjct: 64 SLRARGSRLVVRRGRPS-DVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDLNVA 122
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILPPWRLVQAAGTID 181
++ EP ++ + G +T + Y W ++ + + +L + D
Sbjct: 123 TFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRD--DVLRAYEPPVLQPVPD 180
Query: 182 GCSIEDLGLEDESEKSSNALL---GRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
G + DL + D + + + G + G + L + Y R L
Sbjct: 181 G--VADLPIPDNPDLDVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEP 238
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVT----FFLRAMGLREYSR 294
+TS LSPYL FG ++ R + +E++ E ++T ++ + R++
Sbjct: 239 ATSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYY 298
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ ++ P W D F AW++GRTGYP+VDA MR+L W+HNR
Sbjct: 299 QILWHHPHVLRSAFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRA 358
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K LL+ WRWG +YF L+D D + GWQ+ +G+ D R+ +P
Sbjct: 359 RMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVS 418
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
QG FDP+G YVR++LPEL +P +IH PW P + GV +G +YP P++D
Sbjct: 419 QGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVD 473
>gi|383480261|ref|YP_005389155.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|383494243|ref|YP_005411919.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
gi|378928251|gb|AFC66457.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|378929970|gb|AFC68387.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
Length = 469
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 238/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA A S KE+ R ++ L++ +
Sbjct: 3 SVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 62 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 121 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 180
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 181 LRTVESFKDKKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 221
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 222 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 271
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 272 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 331
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 332 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 391
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P N+ ++ +G +YP+PI+D
Sbjct: 392 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQ 451
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 452 RE---QAIAKYEWAKEKA 466
>gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont]
Length = 477
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/489 (31%), Positives = 232/489 (47%), Gaps = 37/489 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI DN ALAAA R+ V ++ P + Q ++ Q+L L Q
Sbjct: 5 LVWLRNDLRINDNSALAAACRESQAEVLALFIATPGQWQQHSMAPKQAAFIHQNLCLLQQ 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKV---VFNHLYDPVSLVRDHSIKEKLVEL 121
SL G +L + + A++ + + KV +N+ Y+ RD +++++L +
Sbjct: 65 SLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVEKQLDQQ 124
Query: 122 GISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
+ Q ++ LL P + + FT F + + LQ + P R
Sbjct: 125 SVVCQGFDDSLLLPPGSVQTGSNSMFKVFTPFSKAFIRRLQQGLPECHHAPKARARAPVA 184
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSP-GWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ D LE+ E W P G A K L +FV+Q + +Y + R
Sbjct: 185 AGKKIAAFDYPLEEFDET---------WFPAGEEAALKQLRQFVQQRVEKYDQQRDIPAI 235
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
+ TS LSPYL G LS R QCL +IL + S +L + RE+ R+L
Sbjct: 236 DGTSRLSPYLAIGVLSPR---QCL--HRILKEHPQALNNG-SALVWLNELVWREFYRHLM 289
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP +P + + W + AW+QG+TGYP+VDA MR+L GW+HNR+R+
Sbjct: 290 VTFPALCKHQPFVDWTRNVSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRM 349
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI--SGSLPDGHELERLDSPEI 414
I +SF VK LL+ WR G +YF L+D DL + GWQ+ +G+ D R+ +P
Sbjct: 350 ITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTT 409
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDL 472
QG +FD +GE++R+WLPEL +P IH P W N L+YP PI++
Sbjct: 410 QGERFDKQGEFIRRWLPELQDVPDSAIHQPHAWAEKNNK--------KLDYPAPIVEHKA 461
Query: 473 GRERLTQAI 481
R++ A
Sbjct: 462 ARKKTLDAF 470
>gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49726]
gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49726]
Length = 445
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/443 (32%), Positives = 220/443 (49%), Gaps = 33/443 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAA-----RDGSVFPVYTWCPKEEGQFYP-----GRVSRWWL 55
+++WFR DLR+ DN AL AA ++GS + E YP G + WW
Sbjct: 3 SLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPA--YPSTRPLGGATHWWR 60
Query: 56 KQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIK 115
++SL L Q L S G +L L T + + A V +N Y D +K
Sbjct: 61 ERSLHALAQELASRGVKL-LRATGDARTVIPSIAHEVGADTVTWNRRYHGPLREVDARVK 119
Query: 116 EKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQ 175
L + GI+ S G L EPWE+ + +G+ + F + + Q+ LP L+
Sbjct: 120 ATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPF-AAAARSQLADEEPLPVPELL- 177
Query: 176 AAGTIDGCSIEDLGLEDESEKSS-NALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
AG G S +++ A L + W+PG + A + L + L Y + R
Sbjct: 178 -AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQL---DLAHYAEERDI 233
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
N+TSLLSP+L FGE+S R+V+ + A+E + E +S + R+++
Sbjct: 234 PARNATSLLSPHLRFGEVSPREVW-------VAAAEEPDAEKFQSELLW------RDFAW 280
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ ++ P R + F W + K W++G TG PLVDAGMRELW TG++HNR+
Sbjct: 281 HRLYHLPDLATRNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRV 340
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R++V SF K L + WR G ++FWDTL+DAD + WQ+++G D R+ +PE
Sbjct: 341 RMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPET 400
Query: 415 QGSKFDPEGEYVRQWLPELARMP 437
Q +FDP+G Y+RQW P L+ P
Sbjct: 401 QAQRFDPDGAYIRQWAPTLSAPP 423
>gi|15675407|ref|NP_269581.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SF370]
gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|410680903|ref|YP_006933305.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M1 GAS]
gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|395454290|dbj|BAM30629.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 476]
gi|409693492|gb|AFV38352.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
Length = 469
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 238/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA A S KE+ R ++ L++ +
Sbjct: 3 SVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 62 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 121 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 180
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 181 LRTVESFKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 221
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 222 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 271
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 272 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 331
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 332 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 391
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P N+ ++ +G +YP+PI+D
Sbjct: 392 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQ 451
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 452 RE---QAIAKYEWAKEKA 466
>gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2083]
gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium
HTCC2083]
Length = 473
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 150/481 (31%), Positives = 235/481 (48%), Gaps = 28/481 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+ D+PAL+AA + PV K++ G +W L ++L Q+L
Sbjct: 8 IVWFRRDLRVSDHPALSAAC--SARVPVIAVFIKDDIVDGLGAAPKWRLGKALEVFTQTL 65
Query: 67 KSLGAELVLFKTESTLAALLEC-ISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L L+L E +L+ I+ A V ++ LYDP + RD IK L+ G+
Sbjct: 66 ARLNIPLIL--REGPAGDVLDALITETDAQGVYWSRLYDPACVTRDTVIKADLLSKGLEA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYW----DKCLQMQMEPASILPPWRLVQAAGTID 181
+S+ G L++EPW + + G + + +W D+ + + + + + P+ G ++
Sbjct: 124 RSFGGHLMFEPWTVETKTGGMYKVYTPFWRSVKDRDVDVPLAVPTSVQPYE-----GHLE 178
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
D L + + ++ R G + A L +F+E + Y + R TS
Sbjct: 179 SADQSDWAL-GAAMRRGGVIVARHAQVGEAAAQARLADFIENDVSDYVERRDIPSTRGTS 237
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS L GE+S + + M+ + EGK+ FL+ + RE++ +L + P
Sbjct: 238 GLSENLALGEISPHQCWHAG-MRAL-------HEGKDDSEVFLKELVWREFAYHLTHHTP 289
Query: 302 FTHERPLLSNLKYFPWH--ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+ S+ F W+ AD AW+QGRTG VDA MRE++ TG +HNR R+IV+
Sbjct: 290 HILDSNWKSDWDKFAWNEDADHPEVIAWKQGRTGIEFVDAAMREMYVTGKMHNRGRMIVA 349
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
S+ K LL W+ G +F D L D D + +GWQ+ +GS PD R+ +P Q KF
Sbjct: 350 SYLTKHLLTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDASPYFRVFNPVTQLDKF 409
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
D E Y R W+ E P + ++A P K+ G+ YPKPI++ GR+R
Sbjct: 410 DRERGYARAWIAEGQGNPPDTATSYFEAIP---KSWGLRSTDIYPKPIVEAAKGRQRALD 466
Query: 480 A 480
A
Sbjct: 467 A 467
>gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase [Pseudomonas entomophila L48]
gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Pseudomonas entomophila L48]
Length = 484
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 237/494 (47%), Gaps = 44/494 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVS-RWWLKQSLSYLGQS 65
++W R DLRI+DN AL+AA + G ++ P + + +WL+ +L L Q+
Sbjct: 3 LIWLRSDLRIDDNTALSAACQGGPAVALWIASPGQWQRHDDAACKVDFWLR-NLRLLSQA 61
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L++L L++ T++ LLE + V +N Y +RD + + L + G
Sbjct: 62 LEALNIPLLVRTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLEQSG 121
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM--QMEPASILPPWRLVQ----- 175
++ ++ LL++P + G F F + CL+ + PA P R
Sbjct: 122 VATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHLHRSLPARAQRPKRQAPLDIAS 181
Query: 176 --AAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
IDG +I L D W G A + L+ F+++ + Y + R
Sbjct: 182 DPIPEQIDGFAIPPQSLRDH------------WPAGEEEAQRRLSRFIDETVEDYPQLRD 229
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE-GKESVTFFLRAMGLREY 292
TS LSPYL G +S R QCL L + F+ G V ++ + RE+
Sbjct: 230 LPAKAGTSQLSPYLAAGVISPR---QCL--HAALASNHGEFDSGNAGVQTWVNELLWREF 284
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+++ +P + R + + PW + +AW+QGRTG+P++DA MR+L TGW+H
Sbjct: 285 YKHILVGYPQVSRHRAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMH 344
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+ F K LL+ WR G ++F L+D DL + GWQ+ + + D R+ +
Sbjct: 345 NRLRMIVAMFLSKNLLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFN 404
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGV----ELGLNYPKPI 467
P Q +FDP+G ++RQWLPEL M + IH P +K+A + NY PI
Sbjct: 405 PTTQSQRFDPKGTFIRQWLPELQAMDEKTIHRP-------VKSADLFVTNNYSSNYTSPI 457
Query: 468 IDLDLGRERLTQAI 481
+DLD R+R A
Sbjct: 458 VDLDSSRQRALDAF 471
>gi|421855641|ref|ZP_16288017.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403188866|dbj|GAB74218.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 479
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 237/481 (49%), Gaps = 27/481 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+VWFR+DLRI D+ AL A + G + T P + Q + + L L + L
Sbjct: 6 LVWFRQDLRIVDHSALWHARQTGPCIALVTLSPVQWRQHDDAVIKIDLYLRQLKVLKEQL 65
Query: 67 KSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEKLVELG 122
K L +++ + LLEC ++ ++ H+ ++ RD ++ L G
Sbjct: 66 KQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQI-HAHIEAGINEQQRDQDCQQLLDTSG 124
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP-WRLVQAAGTID 181
I++ Y L+ I ++ G + F A+ C ++E A LP + + A I
Sbjct: 125 IALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYS-RLEIA--LPKCYTEITAQNPIT 181
Query: 182 GCSIEDL-----GLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+++ + + + + W ++A +L +F+E H+ Y+ R
Sbjct: 182 LPALDQFQQTVPDIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIERDFPA 241
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL+ G LS+R+ Q L+ Q + E +E + +L + RE+ +++
Sbjct: 242 HSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPE----QEGQSIWLDELLWREFYQHI 297
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ FP + P +N + PW D AW+QG+TG P+VDAGMR+L TGW+HNR+R
Sbjct: 298 LYLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVR 357
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 358 MITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQ 417
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDPEG+Y+R W+PELA + + IH P++ + L+YPKPI+DL R
Sbjct: 418 SRKFDPEGQYIRTWIPELAHLDAKTIHAPYE--------SKTVQQLDYPKPIVDLKYSRA 469
Query: 476 R 476
R
Sbjct: 470 R 470
>gi|341606667|gb|AEK83436.1| At4G08920-like protein [Capsella grandiflora]
Length = 139
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/139 (73%), Positives = 123/139 (88%)
Query: 338 DAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYIS 397
DAGMRELWATGW+H+RIRV+VSSF VKVL LPWRWGMKYFWDTLLDADLE D LGWQYI+
Sbjct: 1 DAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 60
Query: 398 GSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGV 457
G+LPD E +R+D+P+ +G KFDP GEYVR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+
Sbjct: 61 GTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGI 120
Query: 458 ELGLNYPKPIIDLDLGRER 476
ELG NYP+PI+ LD + R
Sbjct: 121 ELGSNYPRPIVGLDEAKAR 139
>gi|379009825|ref|YP_005267638.1| FAD-binding deoxyribodipyrimidine photolyase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
gi|375158349|gb|AFA41415.1| FAD-binding deoxyribodipyrimidine photolyase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
Length = 477
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 241/486 (49%), Gaps = 28/486 (5%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
N+ +VWFR DLRI DNPAL A + V V+ PK+ + + ++ ++L
Sbjct: 2 NKYLVWFRNDLRIHDNPALHYACTNPEALVSGVFVATPKQWEKHFVANCQINFIYKNLLE 61
Query: 62 LGQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L ++L + EL++ + + + + K +K+ FN Y+ RD+ +K KL
Sbjct: 62 LKKNLLEIQIELIIHTCKDFIESADWIFNFCHRNKISKLYFNRQYEYNEKKRDNLVKLKL 121
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAA 177
+ + ++NG+LL P +I ++ + + + +C ++ ILPP + ++
Sbjct: 122 HNITECI-TFNGNLLISPKQIMTQKIKNYRVYRPFLKRCTKIFSKNILYILPPPK-IRKY 179
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
TI +E E + K N L PG + A K L +FV+ L Y+ NR
Sbjct: 180 STIKNNLLEFDRCEIFNNKKYNYFL-----PGENYALKKLKKFVDTKLNNYHINRDFFSI 234
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF--LRAMGLREYSRY 295
NSTS LSPYL G LS + CL++ + +NF +++ F + RE+ ++
Sbjct: 235 NSTSQLSPYLTVGALSASR---CLYLIK---KNSKNFTNEKNPGLFKWYSELIWREFYQH 288
Query: 296 LCFNFPF-THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
L +PF + P L W + KAW+ G TGYP++DA M +L TGW+HNR+
Sbjct: 289 LMIAYPFLSMSEPFLKWTNKICWENNPKYIKAWKNGSTGYPIIDASMHQLKQTGWLHNRL 348
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+I +SF VK L + WR G KYF L+D +L + GWQ+ + + D R+ +P +
Sbjct: 349 RMISASFLVKNLFVDWRIGEKYFISHLIDGNLSSNNGGWQWSASTGTDSAPYFRIFNPIL 408
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG KFD G ++R W+PEL+ +P IH P + A + ++YP PI+
Sbjct: 409 QGKKFDHYGNFIRFWIPELSAVPDHCIHFPHNW------AVENNIKIHYPAPIVQYKTSY 462
Query: 475 ERLTQA 480
+ A
Sbjct: 463 IKFRTA 468
>gi|429099734|ref|ZP_19161840.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
gi|426286074|emb|CCJ87953.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
Length = 473
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 242/481 (50%), Gaps = 38/481 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN ALAAA RD V ++ P++ + P + + W Q+L L
Sbjct: 5 LVWFRADLRVFDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIW--QNLEAL 62
Query: 63 GQSLKSLGAELVLFKTES-TLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEK 117
Q+L G + LF E+ AA +E ++ + + + +N+ Y+ RD +++ +
Sbjct: 63 QQALAKRG--IPLFTREAHDFAAAVETLATFCDEHQVSALFYNYQYELNEARRDAAVERR 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
L E ++ Q ++ ++ P + G + F Y L+ E LPP V A
Sbjct: 121 LAER-VACQGFDDSVMLPPGSVVTGSGEMYKVFTPYSRAFLRRLGEG---LPP--CVNAP 174
Query: 178 GTIDGCSIED---LGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
G +I D L D ++ +ALL + G A + L EF + Y + R
Sbjct: 175 KPRPGGAISDVPALAPFDYPCETPDALL---FPAGEEAALQRLREFCQTAAGDYPEKRDF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TSLLSPYL G LS R QCL ++L EG +S +L + RE+ R
Sbjct: 232 PAIRGTSLLSPYLAIGVLSPR---QCL--HRLLAEHPRALEG-DSGAVWLNELIWREFYR 285
Query: 295 YLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L +P +P + W + F+AW +GRTGYP+VDA MR++ TGW+HNR
Sbjct: 286 HLIVAWPRLCRHQPFVDWTARVAWQQNDALFEAWCEGRTGYPIVDAAMRQMNTTGWMHNR 345
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+I +SF VK LL+ WR G +YF L+D D + GWQ+ + + D R+ +P
Sbjct: 346 LRMITASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPT 405
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FD +G+++R+W+PEL+ +P + +H P D K G L YPKPI+D
Sbjct: 406 TQGQRFDADGDFIRRWVPELSHIPGKAVHEPHD----WAKKHGA--ALRYPKPIVDHKKA 459
Query: 474 R 474
R
Sbjct: 460 R 460
>gi|255318398|ref|ZP_05359631.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
SK82]
gi|262378628|ref|ZP_06071785.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
radioresistens SH164]
gi|255304390|gb|EET83574.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
SK82]
gi|262299913|gb|EEY87825.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
radioresistens SH164]
Length = 479
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 237/481 (49%), Gaps = 27/481 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+VWFR+DLRI D+ AL A + G + T P + Q + + L L + L
Sbjct: 6 LVWFRQDLRIVDHSALWHARQTGPCIALVTLSPVQWRQHDDAVIKIDLYLRQLKVLKEQL 65
Query: 67 KSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEKLVELG 122
K L +++ + LLEC ++ ++ H+ ++ RD ++ L G
Sbjct: 66 KQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQI-HAHIEAGINEQQRDQDCQQLLDTSG 124
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP-WRLVQAAGTID 181
I++ Y L+ I ++ G + F A+ C ++E A LP + + A I
Sbjct: 125 IALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYS-RLEIA--LPKCYTEITAQNPIT 181
Query: 182 GCSIEDL-----GLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
+++ + + + + W ++A +L +F+E H+ Y+ R
Sbjct: 182 LPALDQFQQTVPDIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIERDFPA 241
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL+ G LS+R+ Q L+ Q + E +E + +L + RE+ +++
Sbjct: 242 HSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPE----QEGQSIWLDELLWREFYQHI 297
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+ FP + P +N + PW D AW+QG+TG P+VDAGMR+L TGW+HNR+R
Sbjct: 298 LYLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVR 357
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 358 MITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQ 417
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDPEG+Y+R W+PELA + + IH P++ + L+YPKPI+DL R
Sbjct: 418 SRKFDPEGQYIRTWIPELAHLDAKTIHAPYE--------SKTVQQLDYPKPIVDLKYSRA 469
Query: 476 R 476
R
Sbjct: 470 R 470
>gi|354568677|ref|ZP_08987840.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
gi|353539931|gb|EHC09411.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
Length = 480
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 155/490 (31%), Positives = 237/490 (48%), Gaps = 40/490 (8%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LA A R V V+ P E P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNTGLATARQRSAKVVGVFCLDPNILERDDVAPVRVT--YMIGCLQALQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ G++L++ T A+ A+ A V +N +P S RD +I L E GI
Sbjct: 64 KRYAQAGSQLLILHAHPT-QAIPALAVALGAKAVFWNWDVEPYSQERDRTIISALKEKGI 122
Query: 124 SVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASIL--------PPWRL 173
N D +L+ P +I +T + +W + + + EP + L +
Sbjct: 123 EFLENNWDQVLHAPEDIRTGSNQPYTVYTPFWKNWISKPKAEPVATLENAEGLTEKEKEI 182
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++AG I S +DLG + E +PG A + L EF ++ + Y + R
Sbjct: 183 AKSAGVIALPSAKDLGFVWDGELII--------APGEQAAQERLEEFCDRAINEYQEQRN 234
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R+V+Q Q +W + E + ++ + + + RE+
Sbjct: 235 FPAVDGTSRLSAALKFGAIGIRRVWQA---TQQVWENSRSEETQSNIRTWQQELAWREFY 291
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ +NFP K FPW + +F+AW +G+TGYP+VDA MR++ GW+HNR
Sbjct: 292 QHAMYNFPELAAGAYRDAFKNFPWEINHEHFQAWCEGKTGYPIVDAAMRQMNEIGWMHNR 351
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K LL+ + G +YF L+D DL + GWQ+ + S D + R+ +P
Sbjct: 352 CRMIVASFLTKDLLINPQMGERYFMQKLIDGDLSANNGGWQWSASSGMDPKPV-RIFNPA 410
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q KFDPE EY+RQW+PEL TE++ P +A G YP PI+D
Sbjct: 411 SQAQKFDPEAEYIRQWVPELRSFDTEYLVTG-KITPLERQAVG------YPAPIVD---- 459
Query: 474 RERLTQAIFK 483
+L Q +FK
Sbjct: 460 -HKLQQKMFK 468
>gi|414079662|ref|YP_007001086.1| deoxyribodipyrimidine photolyase [Anabaena sp. 90]
gi|413972941|gb|AFW97029.1| deoxyribodipyrimidine photolyase [Anabaena sp. 90]
Length = 478
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 246/490 (50%), Gaps = 40/490 (8%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI D+ LAAA AR + V+ P+ E P RV ++ L L
Sbjct: 6 LFWHRRDLRISDHTGLAAARARSAKIVGVFCLDPQILEGDDIAPVRVK--YMIGCLQSLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ + G++L++ + + +A + + +A+ A V +N +P S +RD ++ E L GI
Sbjct: 64 ERYQQAGSQLLILQNDPVIA-IPKLAAALTAKAVFWNWDVEPYSQIRDLAVSEALKVEGI 122
Query: 124 SVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWR--------L 173
+YN D LL+ P EI+ +T + +W + + + +P L +
Sbjct: 123 EFLNYNWDQLLHSPTEIFSGTKTPYTVYTPFWKNWITKSKAKPVKTLANLENLTAKEEEI 182
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
Q GTI+ + EDLG ++E SPG A + L F + + Y + R
Sbjct: 183 AQQEGTINLPAAEDLGFIWDAELII--------SPGELAAQEKLDNFAKSAINGYQEQRN 234
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R ++Q ++ + A + E S+ + + + RE+
Sbjct: 235 FPAIHGTSQLSAALKFGIIGIRTIWQTT-IEAL--ANSNSEEVNASIQTWQKELAWREFF 291
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ ++FP K FPW + F+AW +G+TGYP+VDA MR+L TGW+HNR
Sbjct: 292 QHAMYHFPALANGAYRDTFKTFPWQNNETYFQAWCEGKTGYPIVDAAMRQLNETGWMHNR 351
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ +WG KYF L+D DL + GWQ+ + S D L R+ +P
Sbjct: 352 CRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPQPL-RIFNPA 410
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q KFD E EY+RQW+PEL + E++ P + G NYP+PI+D
Sbjct: 411 SQTQKFDAEAEYIRQWIPELRYVDPEYLVTGKIPPLDY-------YGTNYPQPIVD---- 459
Query: 474 RERLTQAIFK 483
+ QA+FK
Sbjct: 460 -HKQQQALFK 468
>gi|154508252|ref|ZP_02043894.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC
17982]
gi|153797886|gb|EDN80306.1| FAD binding domain of DNA photolyase [Actinomyces odontolyticus
ATCC 17982]
Length = 475
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 223/453 (49%), Gaps = 38/453 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAA--ARDGSVFPVYTWCPKE-------EGQFYPGRVSRWWLK 56
T++W R DLR+ D+PAL AA A DG V ++ + G G +RWW
Sbjct: 3 TLIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYH 62
Query: 57 QSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
+SL L L LG LV + ++ + + + A++ T V + Y P + D +IK+
Sbjct: 63 RSLQQLAPRLADLGIPLVFARGDAA-NVMRQVVDALQPTVVHWTRRYAPAACRLDAAIKQ 121
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
+L + V S+ G LL EPW + G + F + + + P P +
Sbjct: 122 EL-KSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLGPLLPEP--SPIGE 178
Query: 177 AGTIDGC-----------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
G D ++ED+GL DE L + W PG A + L
Sbjct: 179 RGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAI--DSW 236
Query: 226 LRYYKNRQKLGG--NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
L Y R+ L G STS +SP L GELS R Q + A + E + +
Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPR---------QAVAAARTSTASGEDIVAW 287
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
R + RE+S +L + + P+ FP++ D +AWRQGRTG LVDAGMR+
Sbjct: 288 TRQLYWREFSWHLLHHREHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQ 347
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
LW TGW+HNR+R++ +S K +L PW+ G ++FW+TL+DAD + + WQ+++G D
Sbjct: 348 LWQTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADA 407
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPE-LAR 435
R+ +P++Q ++FDP YVR+W+PE LAR
Sbjct: 408 APYFRIFNPDLQRTRFDPRSRYVRRWIPEGLAR 440
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 150/476 (31%), Positives = 236/476 (49%), Gaps = 33/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + + L+ + A V FN +P + RD + L +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQK 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAAG- 178
GI V+++ LL+ P ++ +T + +W Q+ + P ++ L + G
Sbjct: 120 KGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPTTLENLQGLDENEGD 179
Query: 179 ----TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
TI+ ++E+LG N L +PG A L EF + + Y ++R
Sbjct: 180 KLTETINLPTLENLGF-----TWQNPL---PLTPGEKAAHSRLEEFCQGVINNYQEDRNF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R + W + L E K+S+ + + + RE+
Sbjct: 232 PAFDGTSRLSAALKFGAIGIRTI----WTATLELLENCRAEEAKDSIITWQQELAWREFY 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP E ++FPW + +F+AW QG+TGYP+VDA MR+L TGW+HNR
Sbjct: 288 QHCLYFFPELAEGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 348 CRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 406
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+RQWLPELA + TE++ + + G YP+PI+D
Sbjct: 407 SQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEPIVD 455
>gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
SH145]
gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
SH145]
Length = 469
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 237/485 (48%), Gaps = 33/485 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
++WFR+DLRI D+ AL A + GS V P++ R+ + + L L Q L
Sbjct: 3 LIWFRQDLRIHDHAALWHATQQGSCIAVMVLSPEQWKLHQDARIKIDFYLRRLDILKQQL 62
Query: 67 KSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
L L++ + A + ++ + N L RD +++ L + I
Sbjct: 63 AQLNIPLIILNVPLWQDLPAEMRSLCQKLQIDTLHANIEVGVNELQRDAQVQQMLEQQQI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI--- 180
V+ Y+ L+ I ++ + + A+ KC + ++ +I + +QA +
Sbjct: 123 RVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQ--NIPGCYPDIQAQDPVELP 180
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D + DL + + +A + W A ++L +F+E + Y R+ + T
Sbjct: 181 DQLTSFDLQKFAANYEVDHA--AQLWPAQDHTALELLDDFIEDKIAHYKTERELPAVDGT 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE----GKESVTFFLRAMGLREYSRYL 296
S LSPYL+ G LS+R+ Q L+ K+ F+ G+++ +L + RE+ +
Sbjct: 239 SRLSPYLNIGILSIRQCMQTLF-------KDSYFQIDDIGQQT---WLDELLWREFYLHT 288
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
F+FP + RP N W N AW+QG+TG P+VDAGMR++ ATGW+HNR+R
Sbjct: 289 LFDFPRVSRHRPFKENTDNIQWRNAPDNLAAWQQGQTGIPIVDAGMRQMRATGWMHNRVR 348
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I + F K LL+ WR G +F L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 349 MITAMFLCKNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCASTGMDAVPYFRIFNPVSQ 408
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP G+Y+RQW+PEL + + IH P+ P +L L+YPKPI+DL R
Sbjct: 409 SQKFDPNGDYIRQWVPELTHLNAKSIHEPYAKNP--------DLALDYPKPIVDLKASRV 460
Query: 476 RLTQA 480
R +A
Sbjct: 461 RAIEA 465
>gi|393725140|ref|ZP_10345067.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26605]
Length = 457
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 217/430 (50%), Gaps = 24/430 (5%)
Query: 18 DNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFK 77
D PAL AAA +G+V PVY Q+ G SRWWL SL+ L +L+ G+ L+L +
Sbjct: 17 DQPALVAAAAEGAVIPVYVLDNAAAKQYAMGGASRWWLHHSLTSLDAALRGKGSRLILRR 76
Query: 78 TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPW 137
++ L + A +V ++P R+ E+ V + + ++G+ L P
Sbjct: 77 GDAA-EELAKVAEDAGAKRVHAIRHFEP--WWRN---AERAVGKALDLVCHDGNYLARPG 130
Query: 138 EIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKS 197
I G + + +W P P + + S+ D L
Sbjct: 131 TITTGSGGQYKIYTPFWRALKATLPPPEPTRVPAHIAAPKTWPESDSLADWDLLPTKPDW 190
Query: 198 SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKV 257
S G+ W+PG A K L F +Q RY + R + +S LSP+LHFGELS +V
Sbjct: 191 STGF-GKAWTPGEDAAHKRLNAFRDQ-AARYDETRNLPSIDGSSRLSPHLHFGELSAAQV 248
Query: 258 FQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP---FTHERPLLSNLKY 314
+ + + SV FL +G R+Y++ + +P + R L L++
Sbjct: 249 WHAV------------TDAGGSVDVFLSEIGWRDYAQNVILQYPDYGTRNGRDALGGLEW 296
Query: 315 FPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGM 374
+ KAW+QGRTGYP+VDAGMR+LW TGW+HNR+R+I +SF +K LL+ WR G
Sbjct: 297 RTGKEANADLKAWQQGRTGYPIVDAGMRQLWTTGWMHNRVRMITASFLIKHLLIDWRAGE 356
Query: 375 KYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELA 434
++FWD L+D D + + WQ+ +G+ D + R+ +P +Q KFD G+Y+R+W+PELA
Sbjct: 357 RWFWDCLVDGDYGSNSVNWQWTAGTGIDSNMFSRVMAPLVQSPKFD-AGDYIREWVPELA 415
Query: 435 RMPTEWIHHP 444
+ + IH P
Sbjct: 416 GVKGDAIHDP 425
>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
Length = 477
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/498 (28%), Positives = 237/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA S KE+ R ++ L++ +
Sbjct: 11 SVMWFRRDLRIDDQKALAHVIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 69
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 70 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 129 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 188
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 189 LRTVESFKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 229
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 230 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 279
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 280 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P N+ ++ +G +YP+PI+D
Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQ 459
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 460 RE---QAIAKYEWAKEKA 474
>gi|386020605|ref|YP_005938629.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
Length = 476
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 151/485 (31%), Positives = 233/485 (48%), Gaps = 30/485 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSR----WWLKQSLSYL 62
++W R DLR DN ALA+A G VY P GQ+ + +WL+ +L L
Sbjct: 4 LIWLRSDLRTSDNTALASAMAAGPTVAVYLITP---GQWLAHDDAACKVDFWLR-NLVEL 59
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L++L L++ E AA LL+ + ++ +N Y RD ++ +L
Sbjct: 60 AGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVAARLR 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQME-PASILPPWRLVQAA 177
GI V+ Y LL+ P + + G F F + CL ++ M PA + PP
Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQQPMT 179
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
T D E G + S+ L W G + A L F+E L +Y++ R
Sbjct: 180 VTSDVPPDEVRGFDRPSD-----YLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAE 234
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS YL G +S+R QCL + + E G T ++ + RE+ +++
Sbjct: 235 PGTSQLSAYLAAGVISIR---QCL-HAAVASNRGELDSGSAGATTWINELLWREFYKHIL 290
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P + R + + PW +AW++GRTG+P++DA MR+L TGW+HNR+R+
Sbjct: 291 VGYPRVSMHRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRM 350
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+ + F K LL+ WR G ++F L+D DL + GWQ+ + + D RL +P Q
Sbjct: 351 VTAMFLSKNLLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQS 410
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+FDP+G+++R+WLPEL + IH+P A ++ A +YP PIIDL R R
Sbjct: 411 QRFDPDGQFLRRWLPELQGLGKREIHNP-SAQRSLFGKA------DYPAPIIDLGESRAR 463
Query: 477 LTQAI 481
A
Sbjct: 464 ALDAF 468
>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 492
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 152/497 (30%), Positives = 235/497 (47%), Gaps = 33/497 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYL 62
+VW R DLR+ DN AL AA +D +V V+ P E+ P + + +L ++L +
Sbjct: 9 VVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAA--FLLENLRLV 66
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
Q+L G L + A+ L++ + +AT + +N+ Y+ +RD +K++L
Sbjct: 67 QQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 126
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ + Y+ LL P + G + F + ++ +E + P A
Sbjct: 127 D-SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVP------APD 179
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
G I ++ + G + G A + L F + + Y + R
Sbjct: 180 ARGEPINNMVELAPFSYPQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPG 239
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCF 298
TS LSPYL G +S R+ F L + E E +E F + + RE+ R+L
Sbjct: 240 TSKLSPYLALGIVSPRQCFNRLRAE-----CPEMLERREGGAFTWFNELVWREFYRHLIV 294
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++P RP + ++ W + AW+QG+TGYP+VDA MR+L TGW+HNR+R+I
Sbjct: 295 SWPQLCKHRPFTAWTQWVKWRESREDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMI 354
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG
Sbjct: 355 CASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 414
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDPEG ++R WLPELA +P + IH P W A LNYP PI+D R+
Sbjct: 415 RFDPEGRFIRHWLPELAAVPDKDIHQPHRW--------ADKHHHQLNYPLPIVDHKTARQ 466
Query: 476 RLTQAIFKMWEMEAADN 492
A + ADN
Sbjct: 467 DTLAAFEAAKNIGMADN 483
>gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
Length = 477
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 238/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA S KE+ R ++ L++ +
Sbjct: 11 SVMWFRRDLRIDDQKALAHVIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 69
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 70 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWD------KCLQMQMEPA-----SILPPWRL 173
V +Y L+ EI ++ G + F Y+ K +++E + ++ P +
Sbjct: 129 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQDRWLNLETPDDV 188
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 189 LRTVESFKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 229
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 230 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 279
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 280 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P N+ ++ +G +YP+PI+D
Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQ 459
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 460 RE---QAIAKYEWAKEKA 474
>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS8232]
gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
Length = 469
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 141/498 (28%), Positives = 237/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA S KE+ R ++ L++ +
Sbjct: 3 SVMWFRRDLRIDDQKALAHVIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 62 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 121 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 180
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 181 LRTVESFKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 221
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 222 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 271
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 272 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 331
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 332 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 391
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P N+ ++ +G +YP+PI+D
Sbjct: 392 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQ 451
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 452 RE---QAIAKYEWAKEKA 466
>gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|417661241|ref|ZP_12310822.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|432396599|ref|ZP_19639385.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|432722229|ref|ZP_19957153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|432726771|ref|ZP_19961653.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|432740457|ref|ZP_19975179.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|432893435|ref|ZP_20105447.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|432989770|ref|ZP_20178437.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|433109992|ref|ZP_20295867.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|430917571|gb|ELC38615.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|431268028|gb|ELF59542.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|431275480|gb|ELF66509.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|431286586|gb|ELF77412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|431424415|gb|ELH06511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|431498007|gb|ELH77223.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|431630927|gb|ELI99251.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
Length = 472
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 238/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + + T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+ID L +S +++ + A L +F + Y + R
Sbjct: 179 GSIDPAPSITLNYPCQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLSELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDHEGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter arcticus 238]
gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter arcticus 238]
Length = 469
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 224/482 (46%), Gaps = 29/482 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I W RRD RI DN AL+AA G V ++ EG G ++ L + + G
Sbjct: 4 VIYWVRRDFRIGDNAALSAACASGRPVIALFICDEVVEGH---GAAPKFRLGEGVRVFGA 60
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L G+ L+L + ++ LA L E + + +N LYDP S RD +K L + GI
Sbjct: 61 ALAEAGSRLILRRGDA-LAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAALKDDGIE 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-----PASILPPWRLVQAAGT 179
V S+ G LL+EPW + + G + F W ++ PAS+ P + A+
Sbjct: 120 VASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGREVATPIAAPASVPVP-DVWPASDQ 178
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+D + +++ +G A L F+++ + Y NR +
Sbjct: 179 LDDWKLGGAMRRGRDVLAAHICVGE------EAARSRLDTFIDERVQSYQTNRDMPSVDG 232
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LS L +GE+S + W GK F + + RE++ +L +
Sbjct: 233 TSRLSENLTYGEISPAVCWHAGWAAI--------HSGKGQAEVFCKELVWREFAYHLVHH 284
Query: 300 FPFTHERPLLSNLKYFPWHAD-LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
P +R FPW+ D AW+QGRTG P VDA MRE++ +G +HNR R+IV
Sbjct: 285 TPHIVDRNWKEGWDAFPWNTDDTAEVMAWKQGRTGVPFVDAAMREMYVSGTMHNRGRMIV 344
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+S+ K L+ W+ G +F D L D D + +GWQ+ +GS PD R+ +P Q K
Sbjct: 345 ASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDK 404
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
FD G Y R W+ E + +DA P K+ G+ YP P++D+ GR+R
Sbjct: 405 FDHAGLYARTWIAEGQGEAPDTALSYFDAIP---KSWGLAPSDVYPAPVVDMATGRQRAL 461
Query: 479 QA 480
+A
Sbjct: 462 EA 463
>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
Length = 481
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 149/476 (31%), Positives = 224/476 (47%), Gaps = 25/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLRI DN AL AA +D V V+ PK+ +L+Q+L L
Sbjct: 5 LVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLHLLQA 64
Query: 65 SLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L G L + + ++ L + + + +N Y+ + RD + +L
Sbjct: 65 ALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQLNRR 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I+ S++ +L P + + F + +Q + M +P + Q AG I
Sbjct: 125 SIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQNAGAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+E D ++S ++ L + G A + L F + + Y + R T
Sbjct: 185 TLTPLEPF---DYPQQSVDSQL---FPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGT 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G LS R+ F L + + E +S F +L + RE+ R+L
Sbjct: 239 SGLSPYLALGILSPRQCFNRLRAE-----CPDLLESSDSGAFTWLNELIWREFYRHLLVA 293
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ AW+QG TGYP+VDA MR+L TGW+HNR+R+I
Sbjct: 294 YPRLCQHHPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMIT 353
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG +
Sbjct: 354 ASFLVKDLLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 413
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD EG ++R+WLPELA +P IH PW A + LNYP P++D L R
Sbjct: 414 FDKEGTFIRRWLPELAAVPDRDIHQPWR------WAQQQQQHLNYPPPLVDHKLAR 463
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 141/449 (31%), Positives = 230/449 (51%), Gaps = 30/449 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W R+DLRI DN L A ++ + + P P RV+ ++ L
Sbjct: 3 NLILFWHRKDLRITDNLGLHEAYQNSKKIIGFFCLDPDILSRDDIAPARVT--YMLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + + G ++FK +S +L+ +KA + +N +P S RD + + L E
Sbjct: 61 ELRKKYQERGGTFLVFK-DSPQNIILKLAHNLKANSIYWNKDVEPYSRNRDRELAKTLKE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHA-FTTFDAYWDKCLQMQM-----EPASILP----P 170
I+ ++ L++ P ++ + + +T + +W +++ P+S++
Sbjct: 120 KNINYHAFWDQLMHPPGDVLTKSNNTPYTVYGPFWRSWEKLEKVAPFPAPSSLISLDENE 179
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
++V G I+ E+LG E + + +L +PG +A + L F LL Y
Sbjct: 180 QKIVDQLGAINLPKAENLGYEWQGD----LIL----APGEKSALERLEYFCSDLLLYYDD 231
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQIL-WAKEENFEGKESVTFFLRAMGL 289
NR + TSLLS L FG ++ R + W K + W ++ E +E++T + + +
Sbjct: 232 NRNFPAIDGTSLLSAALKFGAIAPRTI----WQKTVEEWENCQSDEARENITAWRKELAW 287
Query: 290 REYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
RE+ ++ + FP + P + K FPW D F+AW +G+TGYP+VDA MR+L TGW
Sbjct: 288 REFYQHCLYFFPELAQGPYREHFKEFPWENDEKKFQAWCEGKTGYPIVDAAMRQLNETGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR R+IV+SF K L++ WRWG KYF L D DL + GWQ+ + S D L R+
Sbjct: 348 MHNRCRMIVASFLTKDLIIDWRWGEKYFMQKLYDGDLAANNGGWQWSASSGMDPKPL-RI 406
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPT 438
+P Q KFDPE +Y+RQWLPE++ + T
Sbjct: 407 FNPASQAQKFDPEAQYIRQWLPEISSLDT 435
>gi|339493937|ref|YP_004714230.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338801309|gb|AEJ05141.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 476
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 235/485 (48%), Gaps = 30/485 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQF--YPGRVSR--WWLKQSLSYL 62
++W R DLR DN ALA+A G VY P GQ+ + V + +WL+ +L L
Sbjct: 4 LIWLRSDLRTSDNTALASAMAAGPTVAVYLITP---GQWLAHDDAVCKVDFWLR-NLVEL 59
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L++L L++ E AA LL+ + ++ +N Y RD ++ +L
Sbjct: 60 AGRLQALNVPLLIRDVEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVVARLR 119
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQME-PASILPPWRLVQAA 177
GI V+ Y LL+ P + + G F F + CL ++ M PA + PP
Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLAMSLPACVAPPAPQQAMT 179
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
T D E G + S+ L W G + A L F+E L +Y++ R
Sbjct: 180 VTSDVPPDEVRGFDRPSD-----YLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAE 234
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS YL G +S+R QCL + + E G T ++ + RE+ +++
Sbjct: 235 PGTSQLSAYLAAGVISIR---QCL-HAAVASNRGELDSGSAGATTWINELLWREFYKHIL 290
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P + R + + PW +AW++GRTG+P++DA MR+L TGW+HNR+R+
Sbjct: 291 VGYPRVSMHRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRM 350
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+ + F K LL+ WR G ++F L+D DL + GWQ+ + + D RL +P Q
Sbjct: 351 VTAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQS 410
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+FDP+G+++R+WLPEL + IH+P A ++ A +YP PIIDL R R
Sbjct: 411 QRFDPDGQFLRRWLPELQGLGKREIHNP-SAQRSLFGKA------DYPAPIIDLGESRAR 463
Query: 477 LTQAI 481
A
Sbjct: 464 ALDAF 468
>gi|386618155|ref|YP_006137735.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|387828689|ref|YP_003348626.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|432420783|ref|ZP_19663339.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|432498919|ref|ZP_19740696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|432557689|ref|ZP_19794379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|432693459|ref|ZP_19928671.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|432709505|ref|ZP_19944572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|432917851|ref|ZP_20122334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|432925157|ref|ZP_20127248.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|432980177|ref|ZP_20168956.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|433095601|ref|ZP_20281813.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|433104810|ref|ZP_20290830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|333968656|gb|AEG35461.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|430947255|gb|ELC66962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|431031820|gb|ELD44553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|431094124|gb|ELD99774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|431236696|gb|ELF31901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|431251674|gb|ELF45681.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|431446725|gb|ELH27469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|431448629|gb|ELH29344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|431494172|gb|ELH73762.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|431619115|gb|ELI88040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|431634109|gb|ELJ02365.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 237/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + + T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G ID L +S +++ + A L +F + Y + R
Sbjct: 179 GAIDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLSELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|407715926|ref|YP_006837206.1| Deoxyribodipyrimidine photolyase FAD-binding protein
[Cycloclasticus sp. P1]
gi|407256262|gb|AFT66703.1| Deoxyribodipyrimidine photolyase FAD-binding protein
[Cycloclasticus sp. P1]
Length = 470
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 228/492 (46%), Gaps = 36/492 (7%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSL 59
M +VWFR DLR DNPAL A + V +Y P++ Q V + ++L
Sbjct: 1 MSAQHELVWFRNDLRTIDNPALYHACQSTQPVIAIYIATPQQWHQHDDAAVKLDFWHRNL 60
Query: 60 SYLGQSLKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKE 116
L + L L EL F+ ++ + L+ I A V + PV+ RD ++ +
Sbjct: 61 VQLKKELAELNIELHFFQLDNYQQIPDLIATICQQWAVNKVHVNAELPVNECQRDANVID 120
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP---PWRL 173
+ + G++ Q ++ LL P I + G + F A+ + Q P S+ P P
Sbjct: 121 RCQDSGVAYQEHHDQLLLPPASIRTKTGTPYKVFTAFSTQARQRLATPPSLYPVPNPCEK 180
Query: 174 VQAAGT--IDG-CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
+ T + G C + D+ S+K + W G A LTEF +Q + Y
Sbjct: 181 INDNATKRLSGQCQLADIHWPTVSKK-----IQTFWPAGQQQALARLTEFCQQPIQHYNA 235
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+R TS LSPYL G LSV QC W + E + V + + R
Sbjct: 236 DRDTPSLAGTSRLSPYLASGILSVA---QC-------WHAALHCEMSDGVHIWQNELLWR 285
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ ++ +FP + +PL + W D AW+ G+TG P+VDA MR+L GW
Sbjct: 286 EFYKHTLIDFPQVSKHKPLKLQTEQIEWRHDKEQLAAWQNGKTGIPIVDAAMRQLLTRGW 345
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R+IV+ F K LL+ WR G ++F L+D DL + GWQ+ + + D R+
Sbjct: 346 MHNRLRMIVAMFLTKHLLIDWRLGERWFMQHLIDGDLSANNGGWQWCASTGSDSVPYFRI 405
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP+G ++R +LPELA + + IH P + NYP PI+D
Sbjct: 406 FNPVTQSQRFDPKGAFIRHYLPELAHLSDKDIHLP----------SAKNRPENYPSPIVD 455
Query: 470 LDLGRERLTQAI 481
L GR R A
Sbjct: 456 LKRGRLRALSAF 467
>gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
Length = 482
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 159/500 (31%), Positives = 244/500 (48%), Gaps = 37/500 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI DN AL AA R +V ++ P++ + ++ QSL + Q
Sbjct: 5 LVWLRNDLRINDNHALYAACRSEQANVIALFIATPQQWRMHHMAPKQAEFIWQSLQDVQQ 64
Query: 65 SLKSLGAELVLFKTE---STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL + G L + + + +++ L + + ++ +N+ Y+ RD +++ L E
Sbjct: 65 SLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVERALFED 124
Query: 122 GISVQSYNGDLLYEPWEIYD---ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
+ Q ++ LL P + E FT F + K LQ + P + P V+ +G
Sbjct: 125 DVVSQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGL-PECLPAP--AVRQSG 181
Query: 179 TID--GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
I+ S++ E +SS + G A L EF +Q + Y K R
Sbjct: 182 AIEPEAGSLKPFDYPREDIESS------LFPSGEKAAIARLREFCQQAVTDYPKQRDLPA 235
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL G LS R QCL ++L E V +L + RE+ R+L
Sbjct: 236 RDGTSRLSVYLATGVLSPR---QCL--HRLLKQHPAGLEDSR-VFVWLNELIWREFYRHL 289
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP +P W D AW+QG+TGYP+VDA MR+L + GW+HNR+R
Sbjct: 290 LVAFPALCRHQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLR 349
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P Q
Sbjct: 350 MITASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 409
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G +FD +GE++R+WLPEL ++PTE+IH P W A + L+YP P++D
Sbjct: 410 GERFDKDGEFIRRWLPELRQVPTEYIHQPHQW--------ARKNQRTLDYPLPLVDHKQA 461
Query: 474 RERLTQAIFKMWEMEAADNA 493
R++ T +F+ D+A
Sbjct: 462 RQQ-TLDVFEAARKNGTDHA 480
>gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
Length = 475
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 154/480 (32%), Positives = 229/480 (47%), Gaps = 35/480 (7%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW RRDLR DN AL A A D +V ++ P + Q + ++ + L L
Sbjct: 3 LVWLRRDLRSVDNTALNEALASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVLQTE 62
Query: 66 LKSLGAELVLFKTESTLA----ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L +L L L++ +T A+ E SA+ A +V+ N Y+ RD E+L +
Sbjct: 63 LAALNVPL-LYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLHQQ 121
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI-----LPPWRLVQA 176
GI QS++ + P + +++G F F + + Q P I PW L +A
Sbjct: 122 GIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPF-KRAWLTQFSPPRIQASRAAKPWSLPEA 180
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
++ C + SS+A W + + L F ++ L Y + R
Sbjct: 181 LQSLLWCEAQPFT---HPRVSSDA-----WPVDFDTIRRRLRAFCQEQLDDYKQQRDFPA 232
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRY 295
+ TS LSPYL G LS R+ ++ + + A + + +L + RE Y
Sbjct: 233 QDGTSSLSPYLAIGALSPRQCIARVYAESAMGALSDGAQT------WLSELIWREFYQHL 286
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L F + + L+ W D F W +G TGYP+VDA MR+L TGW+HNR+R
Sbjct: 287 LTFEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L + WRWG +YF L+D D + GWQ+ + + DG R+ +P Q
Sbjct: 347 MIVASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G KFDP+G ++RQW+PELA +P IH AP N GV L YP+PI+D RE
Sbjct: 407 GEKFDPQGRFIRQWVPELATVPEAHIH----APSNW---GGVN-SLLYPQPIVDHKAERE 458
>gi|403057695|ref|YP_006645912.1| deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805021|gb|AFR02659.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 488
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 235/497 (47%), Gaps = 33/497 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYL 62
+VW R DLR+ DN AL AA +D +V V+ P E+ P + + +L ++L+ +
Sbjct: 5 VVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPAQWEKHDMAPRQAA--FLLENLTLV 62
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
Q+L G L ++ A+ L + + +AT + +N+ Y+ +RD +K++L
Sbjct: 63 QQALAEKGIPLHYHESADFSASVDWLAQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 122
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ + Y+ LL P + G + F + ++ +E + P A
Sbjct: 123 D-SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVP------APD 175
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
G I + + G + G A + L F + + Y + R
Sbjct: 176 ARGEPINNTVELAPFSYQQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPG 235
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCF 298
TS LSP+L G +S R+ F L + E E +E F + + RE+ R+L
Sbjct: 236 TSKLSPHLALGIVSPRQCFNRLRAE-----CPEMLERREGGAFTWFNELVWREFYRHLIV 290
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++P RP + ++ W + AW+QG+TGYP+VDA MR+L TGW+HNR+R+I
Sbjct: 291 SWPQLCKHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMI 350
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG
Sbjct: 351 CASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 410
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDPEG ++R WLPELA +P + IH P W A LNYP PI+D R+
Sbjct: 411 RFDPEGRFIRHWLPELAAVPDKDIHQPHRW--------ADKYHHQLNYPLPIVDHKTARQ 462
Query: 476 RLTQAIFKMWEMEAADN 492
A + ADN
Sbjct: 463 NTLAAFEAAKNIGMADN 479
>gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 484
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 149/482 (30%), Positives = 225/482 (46%), Gaps = 25/482 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLR+ DN AL AA + + V V+ P + + +L L +
Sbjct: 5 LVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLKAVQA 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L L L + + A L++ K K+ +NH Y+ RDH++++KL
Sbjct: 65 RLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKKLSHQ 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGTI 180
I Q ++ +L P ++ E G + F + L Q+ + S +P + + G
Sbjct: 125 VI-CQGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPK--KRDGPQ 181
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
S+ +L + L + G + A K LT F + + Y R L T
Sbjct: 182 VSISLTELSFDYPLLDFDTEL----FPIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGT 237
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LSPYL G LS R+ CL A E E + +L + R++ R+L +
Sbjct: 238 SGLSPYLTLGILSPRQCLGCLRE-----AFPEGIEDHKGAFDWLNELIWRDFYRHLLIAY 292
Query: 301 P-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P + P + + WH + W+QG+TGYP+VDA MR+L TGW+HNR+R+I +
Sbjct: 293 PRLSKGHPFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITA 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +F
Sbjct: 353 SFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+GE++R WLPEL +P IH PW K L+YP PI+D R+
Sbjct: 413 DPKGEFIRHWLPELNPVPESEIHQPWSWAEKNHKQ------LDYPTPIVDHQQARQATLS 466
Query: 480 AI 481
A
Sbjct: 467 AF 468
>gi|343503903|ref|ZP_08741705.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342813488|gb|EGU48457.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 471
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 144/488 (29%), Positives = 244/488 (50%), Gaps = 36/488 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
++WFRRDLR+EDN AL +A V +Y P Q + + + + LS L
Sbjct: 3 LMWFRRDLRVEDNTALQSAIDTQQPVVALYVATPATWRQHHLSAIQADLIYRRLSELQSD 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L L L+ + ++ + A+++ ++VFN Y+ +RD ++ + V
Sbjct: 63 LAQLNIPLLYVEVDNYQQSGQAVMDFAQTHGIERLVFNREYEVNEQIRDSDVESRAV--- 119
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFD----AYWDKCLQMQMEPASILPPWRLVQ-AA 177
SVQ ++ L+ P +++++G F F AY + +++ ++ +
Sbjct: 120 FSVQGFDDKCLFAPGSVFNKQGSYFKVFTPFKRAYLSRLASQRVDIVKTAAATKMAEEII 179
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+ + +SS + R + + L +F + Y+ R K
Sbjct: 180 ANFSLATFSPNSVFSYPRQSSGQYVVRS-----HDIRQQLRDFCHDRVSHYHAERDKPSL 234
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE-GKESVTFFLRAMGLREYSRYL 296
N+TS LSPYL G LSVR QC+ ++L+A + + G+E ++ + R++ ++L
Sbjct: 235 NATSQLSPYLAIGALSVR---QCI--ARVLFATNVHLDAGRE---MWISELVWRDFYQHL 286
Query: 297 C-FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
F R ++ + W D + AW++G TGYP+VDA MR+L TGW+HNR+R
Sbjct: 287 LHFEPKLCKGRNFVAWTEKVHWSGDKKHLVAWQKGETGYPIVDAAMRQLNKTGWMHNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V+SF K L L WR G +YF L+D D + GWQ+ + + DG R+ +P Q
Sbjct: 347 MVVASFLTKDLHLHWRHGEEYFMQKLVDGDYAANNGGWQWSASTGCDGQPYFRIFNPTAQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G +FDP+G++VR W+PEL+ +P ++IH PW NV + L+YPKP++D RE
Sbjct: 407 GERFDPDGDFVRHWVPELSAVPNKFIHQPWQW-ENV-------ISLSYPKPMVDHKSERE 458
Query: 476 RLTQAIFK 483
+T +F+
Sbjct: 459 -ITLRLFQ 465
>gi|387872028|ref|YP_005803405.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia
pyrifoliae DSM 12163]
gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia
pyrifoliae DSM 12163]
Length = 504
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 234/488 (47%), Gaps = 36/488 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VW R DLRI DN AL AA R +V ++ P + P + W QSL +
Sbjct: 32 LVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIW--QSLQDV 89
Query: 63 GQSLKSLGAELVLFKTE---STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
QSL + G L + + + +++ L E + ++ +N+ Y+ RD +++ L
Sbjct: 90 QQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERTLQ 149
Query: 120 ELGISVQSYNGDLLYEPWEIYD---ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
+ VQ ++ LL P + E FT F + K LQ Q P + P V+
Sbjct: 150 HDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQ-QGLPECLPAP--AVRP 206
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
G ++ + + + E L + G A L EF +Q + Y R
Sbjct: 207 GGAVEARAGSLVAFDYPREDIDAGL----FPSGEKAAIARLREFCQQAVADYPDKRNLPA 262
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL G LS R+ L +KQ A E++ V +L + RE+ R+L
Sbjct: 263 CDGTSRLSVYLATGVLSPRQCLHRL-LKQHPGALEDS-----RVFVWLNELIWREFYRHL 316
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP +P + K W D AW+QG TGYP+VDA MR+L + GW+HNR+R
Sbjct: 317 LVAFPALCRHQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLR 376
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 377 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 436
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G +FD +GE++R WLPEL +P E+IH P W A L+YP+P++D L
Sbjct: 437 GERFDKDGEFIRHWLPELRHVPPEYIHQPHQW--------ARKNRQTLDYPQPLVDHKLA 488
Query: 474 RERLTQAI 481
R++ A
Sbjct: 489 RQQTLDAF 496
>gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96]
gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96]
Length = 477
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 233/488 (47%), Gaps = 36/488 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VW R DLRI DN AL AA R +V ++ P + P + W QSL +
Sbjct: 5 LVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIW--QSLQDV 62
Query: 63 GQSLKSLGAELVLFKTE---STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
QSL + G L + + + +++ L E + ++ +N+ Y+ RD +++ L
Sbjct: 63 QQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERTLQ 122
Query: 120 ELGISVQSYNGDLLYEPWEIYD---ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
+ VQ ++ LL P + E FT F + K LQ + P + P V+
Sbjct: 123 HDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGL-PECLPAP--AVRP 179
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
G ++ + + + E L G + L EF +Q + Y R
Sbjct: 180 GGAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIAR----LREFCQQAVADYPDKRNLPA 235
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS YL G LS R+ L +KQ A E++ V +L + RE+ R+L
Sbjct: 236 CDGTSRLSVYLATGVLSPRQCLHRL-LKQHPGALEDS-----RVFVWLNELIWREFYRHL 289
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP +P + K W D AW+QG TGYP+VDA MR+L + GW+HNR+R
Sbjct: 290 LVAFPALCRHQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLR 349
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 350 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 409
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
G +FD +GE++R WLPEL +P E+IH P W A L+YP+P++D L
Sbjct: 410 GERFDKDGEFIRHWLPELRHVPPEYIHQPHQW--------ARKNRQTLDYPQPLVDHKLA 461
Query: 474 RERLTQAI 481
R++ A
Sbjct: 462 RQQTLDAF 469
>gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
Length = 476
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/481 (31%), Positives = 227/481 (47%), Gaps = 47/481 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLR+ DN AL AA RD +V V+ P++ Q + ++ +L L Q
Sbjct: 5 LVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHHMAARQAAFIHATLRQLQQ 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L G LV + + AA L + A + +N Y+ RD ++++L +
Sbjct: 65 ALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLEQRLNGM 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP--ASILPP-------WR 172
++ Q+++ LL P + G + + + L E AS+ P W+
Sbjct: 125 -VNCQAFDDSLLLPPGSVLSGNGEMYKMYTPFRRAFLARLAESDIASLPAPAQRSCGQWQ 183
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ D + E L G+ G A + L F Q + Y+ R
Sbjct: 184 AITPPAPFDYPAAE---------------LDDGFPAGEEAALRRLRHFCRQQVQDYHHQR 228
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLRE 291
+ TS+LSPYL G LS R QC+ ++ + F +L + RE
Sbjct: 229 DIPAVDGTSVLSPYLAVGALSPR---QCV--NRLRAECPDMLANPHGGAFCWLNELIWRE 283
Query: 292 YSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
+ R+L P RP ++ W+ NF AW+QGRTGYP+VDA MR+L TGW+
Sbjct: 284 FYRHLLVANPALCRHRPFIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLNQTGWM 343
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR+R+I +SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+
Sbjct: 344 HNRLRMIAASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIF 403
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPII 468
+P QG +FDP+G ++R+WLPELA +P +H P W A + L+YP PI+
Sbjct: 404 NPTTQGKRFDPQGSFIRKWLPELADVPDNELHQPHRW--------AEKQQRVLDYPLPIV 455
Query: 469 D 469
D
Sbjct: 456 D 456
>gi|389714667|ref|ZP_10187240.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. HA]
gi|388609643|gb|EIM38790.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. HA]
Length = 471
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 233/481 (48%), Gaps = 18/481 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
++WFR DLR+ D+ AL AA+ + P++ + + + L L Q L
Sbjct: 3 LIWFRNDLRLHDHAALWHAAQSRQCLALVILSPEQWQLHQDAPIKIDFYLRRLKILKQQL 62
Query: 67 KSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
++L L++ + LL + + V N RD ++++ L + I
Sbjct: 63 EALNIPLLILNIPLWKDISEQLLALCQQFQISTVHCNIETGLNEQQRDQAVEQLLQQHQI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
S + Y L+ I ++ + F A+ KC + + P Q +D
Sbjct: 123 SCEYYEDRTLFPLGSIRNQSQQPYQVFSAFKKKCYERLLIDVPSCYPDIEAQPKLQLD-L 181
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243
S + L+ SE W +A ++L EF+ L Y +R + TS L
Sbjct: 182 SQFNFNLDKFSEAYRPETANPYWPVEDKHAFELLNEFIADRLKDYKTDRDFPAIDGTSQL 241
Query: 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP-F 302
SPYL+ G LS+R+ Q L+ + + E+ G+++ +L + RE+ ++ +FP
Sbjct: 242 SPYLNIGILSIRECVQALFTSSQGYFQLEDV-GQQT---WLDELLWREFYQHTLHDFPKV 297
Query: 303 THERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFA 362
+ +P N K W + AW+QGRTG P+VDAGMR+L ATGW+HNR+R+I + F
Sbjct: 298 SRHQPFKENTKAIEWRDAPEDLAAWQQGRTGIPIVDAGMRQLLATGWMHNRVRMITAMFL 357
Query: 363 VKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPE 422
K LL+ WR G +F L+D DL + GWQ+ + + D R+ +P Q +FDP
Sbjct: 358 SKNLLIDWRLGEAWFIQHLIDGDLAANNGGWQWCASTGMDAAPYFRIFNPVNQSQRFDPN 417
Query: 423 GEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482
G+Y+R+W+PELA + + IH P+ P +LGL+YPKPI+DL R R + +F
Sbjct: 418 GDYIREWVPELAHLDAKTIHEPYAKNP--------DLGLDYPKPIVDLKQSRVRAIE-VF 468
Query: 483 K 483
K
Sbjct: 469 K 469
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 234/483 (48%), Gaps = 31/483 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LA A + V V+ P E P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNVGLAVARQQTQKVVGVFCLDPNILERDDVAPARVT--YMIGCLESLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q +G+EL++ E T A+ + ++ A V +N +P + RD +I L E GI
Sbjct: 64 QRYAEVGSELLILFNEPT-TAIPKLAESLNAKAVFWNWDVEPYAKERDRTILAALKEKGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGTIDG 182
+ Q++ LL+ P EI G +T + +W + + + PA L Q A +
Sbjct: 123 ATQNFWDQLLHSPEEIRSGSGQPYTIYTPFWKNWISKAKSTPAPAL------QNAIRLTD 176
Query: 183 CSIEDLGLEDESEKSSNALLGRGW------SPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
E E + + LG W SPG + A L F ++ + +Y + R
Sbjct: 177 TEKEAARQAGVVELPTASYLGFIWNNNLVISPGEAAAQAKLATFCDRTIDQYQEQRNFPA 236
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L FG + +R V+ + L+ + S+ + + + RE+ ++
Sbjct: 237 VDGTSQLSAALKFGAIGIRTVWDAI---ATLYQNSPE-SAQASIQTWQQELAWREFYQHA 292
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+NFP + K FPW+ + +F+AW +G+TGYP+VDA MR++ GW+HNR R+
Sbjct: 293 IYNFPDLAKGAYREAFKDFPWNDNSEHFQAWCEGKTGYPIVDAAMRQMNTIGWMHNRCRM 352
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF K LLL W+ G KYF L+D DL + GWQ+ + S D + R+ +P Q
Sbjct: 353 IVASFLTKDLLLNWQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPV-RIFNPASQA 411
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD +G Y+R WLPEL+ + T+ + N+ LG YP PI+D + +
Sbjct: 412 QKFDLDGSYIRHWLPELSSVDTKLL-----ITGNITPLERASLG--YPAPIVDHNQQQRE 464
Query: 477 LTQ 479
Q
Sbjct: 465 FKQ 467
>gi|429092381|ref|ZP_19155017.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
gi|426742861|emb|CCJ81130.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
Length = 473
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 241/481 (50%), Gaps = 38/481 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN ALAAA RD V ++ P++ + P + + W Q+L L
Sbjct: 5 LVWFRADLRVFDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIW--QNLEAL 62
Query: 63 GQSLKSLGAELVLFKTEST-LAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEK 117
+L G + LF E+ AA +E ++ + + + +N+ Y+ RD +++ +
Sbjct: 63 QLALAKRG--IPLFTREAPDFAAAVETLATFCDEHQVSALFYNYQYELNEARRDAAVERR 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
L E ++ Q ++ ++ P + G + F Y L+ E LPP V A
Sbjct: 121 LAER-VACQGFDDSVMLPPGSVVTGSGEMYKVFTPYSRAFLRRLGEG---LPP--CVNAP 174
Query: 178 GTIDGCSIED---LGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
G +I D L D ++ +ALL + G A + L EF + Y + R
Sbjct: 175 KPRAGGAISDVPALAPFDYPCETPDALL---FPAGEEAALQRLREFCQTAAGDYPEKRDF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TSLLSPYL G LS R QCL ++L EG S +L + RE+ R
Sbjct: 232 PAIRGTSLLSPYLAIGVLSPR---QCL--HRLLTEHPRALEGG-SGAVWLNELIWREFYR 285
Query: 295 YLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L +P +P + W + F+AW +GRTGYP+VDA MR++ ATGW+HNR
Sbjct: 286 HLIVAWPCLCRHQPFVDWTARVAWQQNDALFEAWCEGRTGYPIVDAAMRQMNATGWMHNR 345
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+I +SF VK LL+ WR G +YF L+D D + GWQ+ + + D R+ +P
Sbjct: 346 LRMITASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPT 405
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FD +G+++R+W+PEL+ +P + +H P D K G L YPKPI+D
Sbjct: 406 TQGQRFDADGDFIRRWVPELSHIPGKAVHEPHD----WAKKQGA--ALRYPKPIVDHKKA 459
Query: 474 R 474
R
Sbjct: 460 R 460
>gi|421499090|ref|ZP_15946150.1| deoxyribodipyrimidine photolyase [Aeromonas media WS]
gi|407181883|gb|EKE55880.1| deoxyribodipyrimidine photolyase [Aeromonas media WS]
Length = 474
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 230/485 (47%), Gaps = 39/485 (8%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A + V ++ P + Q + + ++ + LG+
Sbjct: 3 LVWFRNDLRLADNPALRHGCADEEPVAALFIISPTQWRQHKMAPIRQRFILAQVDMLGRE 62
Query: 66 LKSLGAELVLFKTESTL---AALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AL + + +++ N + RDH + L E
Sbjct: 63 LAALGIPLHLLRVETFAELPQALADLCRELGVSQLYANQAIELDEQRRDHGVTAALAEQE 122
Query: 123 ISVQSYNGDLLYEPWEIYD---ERGHAFTTFDAYWDKCLQ-----MQMEPASILPP--WR 172
+S NG + P + E FT F W K L + PA P W+
Sbjct: 123 VSCHWLNGCCVLPPGRVLTGGREMFKVFTPFSRAWLKALDEDGFVIHRAPAPRGEPLQWQ 182
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ +D E LG L W G + A + L F+EQ +L Y + R
Sbjct: 183 PLAERAFVD----EGLG---------ELTLDPRWPVGEAEALRRLHAFLEQGVLDYGETR 229
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
TS+LSPYL G +S R+ L +Q L A+ ++ + +L + RE+
Sbjct: 230 DFPALAGTSILSPYLAAGIVSPRQCVAAL--QQRLGARPQS--KAQPGFVWLNELIWREF 285
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
R+L P + RP PW D F AW GRTGYP+VDA MR L ATGW+H
Sbjct: 286 YRHLLVLIPTLSMNRPFKPETVALPWSWDPDAFAAWCAGRTGYPIVDAAMRCLNATGWMH 345
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +
Sbjct: 346 NRLRMIVASFLTKDLHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFN 405
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P QG +FDP+GE++R W+ ELA +P ++H P D L+ G + +YP P++D
Sbjct: 406 PTTQGQRFDPQGEFIRTWVTELADVPAAYVHQPHD----WLRLKGRQ---DYPAPMVDHA 458
Query: 472 LGRER 476
+ R R
Sbjct: 459 VARVR 463
>gi|411117128|ref|ZP_11389615.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713231|gb|EKQ70732.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 493
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/488 (30%), Positives = 235/488 (48%), Gaps = 40/488 (8%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLR+ DN LAAA R V V+ P + P RVS ++ L L
Sbjct: 6 LFWHRRDLRLADNVGLAAARQRSSKVVGVFCLDPTILQRDDVAPVRVS--YMLGCLQSLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ +G++L++ KT ++ + + A V +N +P S RD ++ L E GI
Sbjct: 64 EGYAKVGSQLLIVKTLPQ-KGIVNLATTLNARAVFWNQDVEPYSRARDRTVAAALREQGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASILPPWRLVQAAGTIDG 182
+ LL+ P +I G +T + +W + + +P L + G
Sbjct: 123 EACPFWDQLLHAPKDITTGSGQPYTVYTPFWRNWSSKEKSQPLDTL---------AQVTG 173
Query: 183 CSIEDLGLEDES---EKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKNRQ 233
+ ++ L ++ E + LG W+ PG + A L EF + + Y + R
Sbjct: 174 LTAKEQELASQAGAIELPTAPDLGFIWTAPFVIEPGEAGASVKLEEFCNRAIAEYQEQRN 233
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF--EGKESVTFFLRAMGLRE 291
TS LS L FG + +R V+ L A E++ E ++S+ + + + RE
Sbjct: 234 FPAYPGTSQLSAALKFGAIGIRTVWAA-----TLAAMEQSRSNEARDSIRTWQQELAWRE 288
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ ++ + FP + P K+FPW F+AW +GRTGYP+VDA MR+L GW+H
Sbjct: 289 FYQHALYFFPELADGPYRQVFKHFPWENREDRFQAWCEGRTGYPIVDAAMRQLKEIGWMH 348
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR R+IV+SF K LL+ RWG KYF L+D DL + GWQ+ + S D L R+ +
Sbjct: 349 NRCRMIVASFLTKDLLVDHRWGEKYFMQKLIDGDLAANNGGWQWSTSSGMDPKPL-RIFN 407
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q KFDPE EY+R+W+PEL + TE + + A G YP+ I+D +
Sbjct: 408 PASQAKKFDPEAEYIREWIPELRSVDTEVL-----VSGKIPSAERDRCG--YPEAIVDHN 460
Query: 472 LGRERLTQ 479
+ + R +
Sbjct: 461 VQQRRFKE 468
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/493 (31%), Positives = 244/493 (49%), Gaps = 42/493 (8%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R V V+ P E P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNTGLAAARQRTQKVVGVFCLDPNILERDDVAPVRVT--YMIGCLQQLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q +G++L++ + E A+ +A+ A V +N +P S VRD ++ E L E GI
Sbjct: 64 QRYAQVGSQLLILQGEPR-EAIPALATALSAKAVFWNWDVEPYSQVRDRTVIETLKEKGI 122
Query: 124 SVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
V N D +L+ P +I+ +T F +W S P QA ++G
Sbjct: 123 QVLEENWDQILHSPDDIFTGSNQPYTVFTPFWRNW--------SSKPKAAPAQALQDVEG 174
Query: 183 CSIEDLGLEDESEKSSNAL-----LGRGWS------PGWSNADKVLTEFVEQHLLRYYKN 231
S ++L + + + AL LG W PG + A + L +F + + Y +
Sbjct: 175 LSEQEL--QTAEKVGAIALPTAKDLGFNWENGLVIEPGETPARERLEQFCHRAIEEYKEQ 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLR 290
R + TS LS L FG + +R+V W + + E + S+ + + + R
Sbjct: 233 RNFPAYDGTSQLSAALKFGAIGIRRV----WAATVEAMENTRSDEAQTSIRAWQQELAWR 288
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
E+ ++ ++FP + K FP+ + F+AW +GRTGYP+VDA MR++ GW+
Sbjct: 289 EFYQHAMYHFPELEQGAYRQQFKNFPYENNEEYFQAWCEGRTGYPIVDAAMRQMNNIGWM 348
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR R+IV++F K LL+ R G KYF+ L+D DL + GWQ+ + S D + R+
Sbjct: 349 HNRCRMIVANFLTKDLLIDPRLGEKYFYQRLIDGDLSANNGGWQWSASSGMDPKPI-RIF 407
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
+P Q KFDP+GEY+R+WLPEL TE + N+ K ++YP PI+D
Sbjct: 408 NPASQAQKFDPDGEYIREWLPELRSFDTEEL-----LSGNISKRD--RAAVDYPNPIVDH 460
Query: 471 DLGRERLTQAIFK 483
+ ++R + I++
Sbjct: 461 KI-QQRQFKVIYQ 472
>gi|448343517|ref|ZP_21532441.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
gi|445622861|gb|ELY76302.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
Length = 469
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 238/487 (48%), Gaps = 22/487 (4%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+ W RRDLR DN LA AA+ D V P++ P P RV+ L ++L L
Sbjct: 3 VHWHRRDLRPGDNRGLARAASTDEPVVPLFVLDPSVLEHASPIRVA--CLLEALESLRSW 60
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
++ G++L++ + E++ A+ +A A VV+N Y ++ RD +++ L + GI+
Sbjct: 61 YRAHGSDLLVVRGEAS-TAVPRVATAHDAATVVWNEDYSGLARKRDQAVRTALTDEGIAA 119
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S + + +EP I +G ++ F +W K P + P + A S+
Sbjct: 120 ESVHDAIHHEPGSITPNQGDHYSVFSYFWKKWRDRDKRPPADEPEASDLAAVSGDPIPSL 179
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+++G +D + A + + +F + Y R + TS LSP
Sbjct: 180 DEVGFDDPEATPPTVTT--------AAARERVADFCSGPIYEYAALRDYPAESGTSRLSP 231
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRYLCFNFPFTH 304
+L +G + R+++ A + + +ESV F R + RE Y+ L FN P T
Sbjct: 232 HLKWGTIGPRELYAATERAAERAASDGD---RESVREFQRQLAWREFYAHVLAFN-PNTV 287
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
WH D +AW+ G TGYP+VDAGMR+L A GW+HNR+R++V+SF K
Sbjct: 288 TEDFSGYDNEIDWHDDPDALEAWKAGTTGYPIVDAGMRQLRADGWMHNRVRMLVASFLTK 347
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL WR G +F + L D D D+ GWQ+ + D R+ +P QG ++DP+ E
Sbjct: 348 DLLTDWRAGYAWFREKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYDPDAE 407
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y+R+++PELA E IH D P + + +YP PI+D R+R A+F+
Sbjct: 408 YIREYVPELADATAEEIHGWHDLEPPERE----RIAPDYPGPIVDHAERRDRAI-ALFER 462
Query: 485 WEMEAAD 491
EA++
Sbjct: 463 ARGEASE 469
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 233/476 (48%), Gaps = 33/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++LV+ + + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLVIIRGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAAG- 178
GI V+++ LL P ++ +T + +W Q+ + P ++ L + G
Sbjct: 120 KGIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPKTLENLQGLDENEGE 179
Query: 179 ----TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
TI+ ++E+LG N L +PG AD L EF + + Y ++R
Sbjct: 180 KLTETINLPTLENLGF-----TWQNPL---PLTPGEKAADSRLEEFCQGVINNYQEDRNF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R + W + L E K S+ + + + RE+
Sbjct: 232 PAFDGTSRLSAALKFGAIGIRTI----WTATLELLENCRAEEAKNSIITWQQELAWREFY 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP ++FPW + +F+AW QG+TGYP+VDA MR+L TGW+HNR
Sbjct: 288 QHCLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 348 CRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 406
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+RQWLPELA + TE++ + + G YP+PI+D
Sbjct: 407 SQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEPIVD 455
>gi|416855512|ref|ZP_11911543.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 138244]
gi|334842869|gb|EGM21468.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 138244]
gi|453042710|gb|EME90449.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PA21_ST175]
Length = 481
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 228/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 64
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + + V N Y RD ++ ++L E
Sbjct: 65 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVSAVHVNQEYGVNEERRDQAVGQRLRE 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 125 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 172
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 287
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 288 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 348 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 407
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 408 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 459
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 460 LKASRERALAAF 471
>gi|392307549|ref|ZP_10270083.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas citrea NCIMB
1889]
Length = 462
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 144/488 (29%), Positives = 238/488 (48%), Gaps = 40/488 (8%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE---EGQFYPGRVSRWWLKQSLSY 61
++I WFRRDLR N AL A ++G+ ++ C K+ E P ++ +K+ + Y
Sbjct: 2 KSIFWFRRDLRYFGNEALIEATKNGANMALFFVCEKQWRVEHGVAPIQIDL--IKRRIDY 59
Query: 62 LGQSLKSLGAELVLFKTE--STLAALLECISAIKATKVVF-NHLYDPVSLVRDHSIKEKL 118
LGQ L +G EL + + + + A L+ V+ N Y+ + RD +
Sbjct: 60 LGQKLAQVGIELRIISVDMYADIPAKLDAFCKSYQVDYVYANTEYEINEVARDTA----C 115
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
+ LG+ ++ ++GD++ +P + + F F + L++ + I+P W L Q
Sbjct: 116 MSLGVKLRLFDGDVIAKPGSVLTKSQEMFKVFTPFKKAWLKLFEQTQFIVPSWPLDQQGK 175
Query: 179 -TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
T C + L +D S K W + ++ + FV + +Y+ R G
Sbjct: 176 LTTVWCKPDSLIGDDSSCK---------WPVDDESLARIASRFVIEKCAKYHAERDIPGI 226
Query: 238 NSTSLLSPYLHFGELSVRKVF---QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TS LSPYL G +SV+++ QC + + ++ F ++ + RE+ R
Sbjct: 227 KGTSGLSPYLAIGAISVKQLIAEVQCHFPDILQTPSKDEFT-------WINELIWREFYR 279
Query: 295 YLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L +P R S W+ + F AW +G TGYP+VDA MR+L TGW+HNR
Sbjct: 280 HLIVAYPNLCKYRNFNSKYDTVVWNDNEELFSAWCRGDTGYPIVDAAMRQLNQTGWMHNR 339
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL+ WR G +YF + L+D D + GWQ+ + + D R+ +P
Sbjct: 340 LRMIVASFLTKHLLIDWRKGERYFMEKLIDGDFASNSGGWQWAASTGCDAQPYFRIFNPV 399
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q KFDPEG ++R ++PELA +P+++IH P D + + NY I++
Sbjct: 400 TQSKKFDPEGNFIRTYVPELADIPSKYIHFPHDYIASFSSS-------NYSPAIVEHKEA 452
Query: 474 RERLTQAI 481
R+R A
Sbjct: 453 RQRALDAF 460
>gi|429089957|ref|ZP_19152689.1| Deoxyribodipyrimidine photolyase [Cronobacter universalis NCTC
9529]
gi|426509760|emb|CCK17801.1| Deoxyribodipyrimidine photolyase [Cronobacter universalis NCTC
9529]
Length = 468
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/481 (32%), Positives = 240/481 (49%), Gaps = 38/481 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN ALAAA RD V ++ P++ + P + + ++ Q+L L
Sbjct: 5 LVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAA--FIHQNLEAL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAI-----KATKVVFNHLYDPVSLVRDHSIKEK 117
Q+L + G + LF E+ A A + + + +N+ Y+ RD +++ +
Sbjct: 63 QQALAARG--IALFTREAPDFAAAVDALAAFCDEQQVSTLFYNYQYELNEARRDAAVEHR 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
L E ++ Q ++ ++ P + G + F Y + E LPP V A
Sbjct: 121 L-EGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFIHRLGEG---LPP--CVSAP 174
Query: 178 GTIDGCSIEDL---GLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+G +I DL D ++ +ALL + G A K L EF + Y + R
Sbjct: 175 KPRNGGAITDLPALAPFDYPCETPDALL---FPAGEEAALKRLREFCQTAAGDYPEKRDF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TSLLSPYL G LS R QCL ++L EG S +L + RE+ R
Sbjct: 232 PAIRGTSLLSPYLAIGVLSPR---QCL--HRLLTEHPRALEGG-SGAVWLNELIWREFYR 285
Query: 295 YLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L +P +P + W + +F+AW +GRTGYP+VDA MR++ ATGW+HNR
Sbjct: 286 HLIVAWPHLCRHQPFIDWTARVAWQRNDAHFQAWCEGRTGYPIVDAAMRQMNATGWMHNR 345
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+I +SF VK LL+ WR G +YF L+D D + GWQ+ + + D R+ +P
Sbjct: 346 LRMIAASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPT 405
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FD EG+++R+W+PEL+ +P + +H P KA L YP+PI+D
Sbjct: 406 TQGQRFDAEGDFIRRWVPELSHIPGKAVHEPHAWAKKNGKA------LRYPQPIVDHKQA 459
Query: 474 R 474
R
Sbjct: 460 R 460
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/485 (31%), Positives = 238/485 (49%), Gaps = 51/485 (10%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI V+++ LL+ P ++ +T + +W Q L +A+ T
Sbjct: 120 KGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQ-------------LAKASPT- 165
Query: 181 DGCSIEDL-GL-EDESEKSSNAL-------LGRGW------SPGWSNADKVLTEFVEQHL 225
++E+L GL E+E EK + + LG W +PG A+ L EF + +
Sbjct: 166 ---TLENLQGLDENEGEKLTETINLPTLENLGFTWQNPLPLTPGEKAANSRLEEFCQGVI 222
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFL 284
Y ++R + TS LS L FG + +R + W + L E K+S+ +
Sbjct: 223 NNYQEDRNFPAVDGTSRLSAALKFGAIGIRTI----WTATLELLENCRAQEAKDSIITWQ 278
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+ + RE+ ++ + FP ++FPW + +F+AW QG+TGYP+VDA MR+L
Sbjct: 279 QELAWREFYQHCLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQL 338
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
TGW+HNR R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D
Sbjct: 339 NETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPK 398
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
L R+ +P Q KFDPEGEY+RQWLPELA + TE++ + + G YP
Sbjct: 399 PL-RIFNPASQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YP 450
Query: 465 KPIID 469
+PI+D
Sbjct: 451 EPIVD 455
>gi|421082068|ref|ZP_15542962.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
gi|401703103|gb|EJS93332.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
Length = 488
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 143/478 (29%), Positives = 224/478 (46%), Gaps = 29/478 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLR+ DN AL AA D +V V+ P + + +L ++L+ +
Sbjct: 5 VVWLRNDLRVTDNLALHAACHDPHATVLAVFIATPAQWKKHDMALRQATFLLENLTLVQH 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L G L + A+ L++ + +AT + +NH Y+ +RD +K++L +
Sbjct: 65 ALAEKGIPLHYHECTDFSASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQVKDRLAD- 123
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
+ Y+ LL P + G + F + ++ +E + P V+ D
Sbjct: 124 SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTTCVPAPDVRGEPIKD 183
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
++ S + G A + L F + + Y + R TS
Sbjct: 184 KVALSPFSYPQVEVNSDDFPCGE------RVALQQLRRFCREQVQDYDRQRDFPAQPGTS 237
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFNF 300
LSPYL G +S R+ F L + E E +E F + + RE+ R+L ++
Sbjct: 238 KLSPYLALGIVSPRQCFNRLRTE-----CPEMLERREGGAFTWFNELVWREFYRHLIVSW 292
Query: 301 P-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P RP + ++ W + AW+QG+TGYP+VDA MR+L TGW+HNR+R+I +
Sbjct: 293 PQLCKHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICA 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG +F
Sbjct: 353 SFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
DPEG ++R WLPEL +P + IH P W A L+YP PI+D R+
Sbjct: 413 DPEGRFIRHWLPELTAVPDKDIHQPHRW--------ADKQHFKLSYPLPIVDHKTARQ 462
>gi|451985074|ref|ZP_21933305.1| Deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 18A]
gi|451757248|emb|CCQ85828.1| Deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 18A]
Length = 476
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 59
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 60 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLRE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 120 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 167
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 228 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 282
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 283 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 342
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
IHNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 343 IHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 402
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 403 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 454
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 455 LKASRERALAAF 466
>gi|432371439|ref|ZP_19614495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
gi|430899652|gb|ELC21746.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
Length = 472
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 240/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ ++ L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPRQWATHNMSPRQAEFINAQLNTLQI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L G L LF AA +E + + + T + +N+ Y+ RD +++ L
Sbjct: 65 MLAEKGIPL-LFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEVNERARDALVEKTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++G ++ P + E FT F W K L+ + P + P V+++
Sbjct: 122 HNVVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGI-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I S L +S +++ + A L +F + Y + R
Sbjct: 179 GSIAPPSSITLNYPRQSFDTAHFPVEE------KTAIAQLRQFCQSGAGEYEQQRNFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGVLSPR---QCL--HRLLAEQPQALEGGAG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
P RP ++ W ++ + KAW++G+TGYP+VDA MR+L TGW+HNR+R+
Sbjct: 287 TYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNGTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW + AGV+ L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKLVHEPW----KWAEKAGVK--LDYPQPIVDHKEARVR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
Length = 469
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 146/484 (30%), Positives = 235/484 (48%), Gaps = 31/484 (6%)
Query: 6 TIVWFRRDLRIEDN-PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI D AAAA GSV V+ C ++ + + V R +L ++L L
Sbjct: 2 NLVWLRNDLRISDQRALGAAAAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECLRL 61
Query: 65 SLKSLGAELVLFKTESTLA---ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L+++G L + A ALL+ A ++ FN Y RD +++ E
Sbjct: 62 QLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFREN 121
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI- 180
G+ V+ ++ ++ RG + F + L++ +E ++L P +V
Sbjct: 122 GMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPHPF 181
Query: 181 --DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
DG ++ L W G + A + L F++ + RY+ +R
Sbjct: 182 PGDGAALP---------TDIPHPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPAIE 232
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSPYL G LS+R QC + A E G E +L + RE+ +++
Sbjct: 233 GTSALSPYLACGVLSIR---QC-----VSAALELANGGSEGARVWLSELIWREFFQHILR 284
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
FP + R + + W D G F AW +GRTGYP+VDA M +L +TGW+HNR+R+I
Sbjct: 285 AFPRVSTNRAFQEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLRMI 344
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+ F K LL+ WRWG +YF + L+D DL + GWQ+ + + D R+ P Q
Sbjct: 345 CAMFLTKDLLIDWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQSK 404
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
+FDP G+++R +LP+LA + ++IH P D+ + + ++YP+P++D + R+R
Sbjct: 405 RFDPHGQFIRHFLPQLAELDEKYIHEPHDS------SGLLRPNIDYPRPMVDHKVARQRA 458
Query: 478 TQAI 481
A
Sbjct: 459 IDAF 462
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 149/483 (30%), Positives = 231/483 (47%), Gaps = 47/483 (9%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
GI V+++ LL+ P ++ +T + +W Q+ + L T+
Sbjct: 120 KGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPTTLE---------TL 170
Query: 181 DGCSIEDLGLEDESEKSSNAL-------LGRGW------SPGWSNADKVLTEFVEQHLLR 227
G E+E EK + + LG W +PG A L EF + +
Sbjct: 171 QGLD------ENEGEKLTETINLPTLENLGFTWQNPLPLTPGEKAASSRLEEFCQGVINN 224
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRA 286
Y ++R + TS LS L FG + +R + W + L E K+S+ + +
Sbjct: 225 YQEDRNFPAFDGTSRLSAALKFGAIGIRTI----WTATLELLENCRAQEAKDSIITWQQE 280
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
+ RE+ ++ + FP ++FPW + +F+AW QG+TGYP+VDA MR+L
Sbjct: 281 LAWREFYQHCLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNE 340
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
TGW+HNR R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L
Sbjct: 341 TGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL 400
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466
R+ +P Q KFDPEGEY+RQWLPELA + TE++ + + G YP+P
Sbjct: 401 -RIFNPASQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEP 452
Query: 467 IID 469
I+D
Sbjct: 453 IVD 455
>gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
Length = 441
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/426 (32%), Positives = 201/426 (47%), Gaps = 16/426 (3%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
T+V FR DLR+ D+PAL A G V +Y + EG G ++WWL SL+ L
Sbjct: 3 TVVLFRDDLRVTDHPALHEAVSHGEPVVCLYVLDEESEGVRPLGGAAKWWLHHSLTSLAS 62
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L LG L L + + + + A ++++N Y D +KE E G+
Sbjct: 63 DLSELGVPLTLRRGPAG-KVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEWAGENGVE 121
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCS 184
SY G L++EPW + + G + F +W C P + A
Sbjct: 122 AHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPAPSSIDHADPAPASED 181
Query: 185 IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
+ D L S L R W+ G A + L EF+++ L RY ++R +TS LS
Sbjct: 182 LVDWELLPTHPDWSGGL-ARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARPATSGLS 240
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+L +GE+S V+ E E+ FL +G RE+S Y + P
Sbjct: 241 PHLRWGEISPYTVWHTA------------LERAENPGKFLTEVGWREFSWYNLYVHPDMA 288
Query: 305 ERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ FPW D AW+ GRTG PLVDAGM ELW TG + NR+R++V+S
Sbjct: 289 TENINPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASLLA 348
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K LL+ WR G ++FWDTL+DAD + WQ+++G D R+ + E Q KFDP+
Sbjct: 349 KNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDPDF 408
Query: 424 EYVRQW 429
YV +W
Sbjct: 409 VYVDRW 414
>gi|376283622|ref|YP_005156832.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae 31A]
gi|371577137|gb|AEX40805.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 31A]
Length = 446
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 214/456 (46%), Gaps = 53/456 (11%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPW- 171
G+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HGVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKSAQPID 181
Query: 172 -RLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
R QAA I DLG + S + + W+PG A + L E ++ L RY +
Sbjct: 182 DRETQAA-------IADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLE 229
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+R + + TS LSP L FGELSV +V W EG F R + R
Sbjct: 230 DRDRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWR 273
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWA 346
+++ + P + FPW D G+F+A WR GRTG LVDAGMRELWA
Sbjct: 274 DFAWHRLDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWA 331
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
G +HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D
Sbjct: 332 IGTMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPY 391
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPEL-ARMPTEWI 441
R+ +P+ Q +FDP+G Y +WLP + A P E I
Sbjct: 392 FRIFNPDTQARRFDPDGTYRNRWLPIMSADYPVEAI 427
>gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
gi|418588036|ref|ZP_13152053.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P1]
gi|418590121|ref|ZP_13154036.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P2]
gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
gi|375041176|gb|EHS33889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P1]
gi|375051072|gb|EHS43545.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P2]
Length = 481
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCLALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 64
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 65 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLRE 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 125 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 172
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 287
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 288 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 348 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 407
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 408 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 459
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 460 LKASRERALAAF 471
>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357828|ref|ZP_12960518.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689067|gb|EHI53615.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 473
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 224/479 (46%), Gaps = 31/479 (6%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFR DLR+ DNPAL A A G V ++ P + Q + + +L + LG++
Sbjct: 3 LVWFRNDLRLADNPALRHACAEAGEVAALFVISPTQWQQHKMAPIRQQFLLAQVDELGKA 62
Query: 66 LKSLGAELVLFKTESTL---AALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +LG L L + E+ AL + +++ N + RD ++ L E
Sbjct: 63 LAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAMLAEQE 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+S +NG + P + G F F + L+ E ++
Sbjct: 123 VSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVI---------HRAPA 173
Query: 183 CSIEDLGLEDESEKS-SNALLGR-----GWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
E L + +E+ S LG W G + A + L F+E +L Y + R
Sbjct: 174 PRAEPLPWQPLTEREWSYGALGEVTPDPRWPVGEAEAQRRLHAFLEPAVLDYEETRDFPA 233
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
TS+LSPYL G +S R QC+ + Q + + + L + RE+ R+L
Sbjct: 234 QAGTSILSPYLAAGIISPR---QCVGVLQQRLGHRPQSKAQPGFVW-LNELVWREFYRHL 289
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
P + P PW D F AW +GRTGYP+VDA MR L ATGW+HNR+R
Sbjct: 290 LVLVPTLSMNLPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATGWMHNRLR 349
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L + WR G YF L+D DL + GWQ+ +G+ D R+ +P Q
Sbjct: 350 MIVASFLTKDLHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQ 409
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
G +FDP+G+++R W+ ELA +P ++H P D L+ G G YP P++D L R
Sbjct: 410 GQRFDPQGDFIRTWVTELADIPAAYVHQPHD----WLRLKG---GRGYPAPMVDHALAR 461
>gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 471
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 152/489 (31%), Positives = 246/489 (50%), Gaps = 37/489 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW RRDLRIEDN AL A G V +YT P+ + + + + L L Q
Sbjct: 3 LVWLRRDLRIEDNSALVNAVETGEPVVCIYTATPETWHEHGLAPIQADLIYRRLQGLKQD 62
Query: 66 LKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L+SL L+ + ++ + + E + + A +V+ N Y+ RD +++ L +
Sbjct: 63 LESLRIPLLYEEVDTYTESAKRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLNDTA 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL------QMQMEPASILPPWRLVQA 176
I V+S + ++ P I +++G F F + L Q+ + RL +
Sbjct: 123 IQVKSSDDKCIFAPGSIVNKQGSYFKVFTPFKKAYLAELGECSFQVRKPQVACSSRLPEH 182
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
++ +D+ E S ++ + + L +F Q + Y NR
Sbjct: 183 LSSL--LFADDVTFSYPREPSDQ------FAADTQSIIQTLRDFDSQDVEGYASNRDFPA 234
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF-EGKESVTFFLRAMGLREYSRY 295
TS LSPYL G LSVR QC M ++++ + +G+E + + RE+ ++
Sbjct: 235 IAGTSQLSPYLAIGALSVR---QC--MARLMFGQAPPLSQGRE---VWQSELIWREFYQH 286
Query: 296 LC-FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
L F + R + W + +AW+QG TG+P+VDA M++L TGW+HNR+
Sbjct: 287 LIYFEAKLSKGRSFVDWGDRLVWKNEPQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRL 346
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF VK L + WR G +YF + L+D D + GWQ+ + + DG R+ +P
Sbjct: 347 RMIVASFLVKDLHVDWRVGERYFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPIT 406
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG +FDP+GE+VRQWLPELA++P +++H PW K +GV L+YP PI+D + R
Sbjct: 407 QGERFDPQGEFVRQWLPELAQVPDKYLHQPW-------KWSGVR-SLSYPPPIVDHKVER 458
Query: 475 ERLTQAIFK 483
E +T ++K
Sbjct: 459 E-VTLRLYK 466
>gi|421673232|ref|ZP_16113176.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
gi|421689964|ref|ZP_16129637.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|404565468|gb|EKA70636.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
IS-116]
gi|410387051|gb|EKP39511.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC065]
Length = 480
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 242/489 (49%), Gaps = 34/489 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELSALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILPPWRLV 174
L G + ++ ++ I ++ + F A+ C L P P +
Sbjct: 121 LNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK-- 178
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRG----WSPGWSNADKVLTEFVEQHLLRYYK 230
Q +D +++ L DE EK + L + W G A + L +F+E+ + Y
Sbjct: 179 QNEVPLDFLQGKNIDL-DEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYNV 237
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRA 286
R TS LSPYL+ G LSVR+ Q L+ Q NF EG+++ +L
Sbjct: 238 ERDSPHIQGTSKLSPYLNIGILSVRQCLQALFRNQ-----HGNFHLVNEGQQT---WLDE 289
Query: 287 MGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P N + W+ + + AW+ G+TG P+VDAGMR+L
Sbjct: 290 LLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLL 349
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 350 QTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVP 409
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPK
Sbjct: 410 YFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGLNYPK 461
Query: 466 PIIDLDLGR 474
PI+DL R
Sbjct: 462 PIVDLKETR 470
>gi|386363038|ref|YP_006072369.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|421892494|ref|ZP_16323147.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
gi|350277447|gb|AEQ24815.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|379981746|emb|CCG26869.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
Length = 469
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 141/498 (28%), Positives = 237/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA A S KE+ R ++ L++ +
Sbjct: 3 SVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 62 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 121 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 180
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 181 LRTVESFKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 221
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 222 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 271
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 272 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 331
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 332 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 391
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P + ++ +G +YP+PI+D
Sbjct: 392 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 451
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 452 RE---QAIAKYEWAKEKA 466
>gi|441504075|ref|ZP_20986072.1| Deoxyribodipyrimidine photolyase [Photobacterium sp. AK15]
gi|441428248|gb|ELR65713.1| Deoxyribodipyrimidine photolyase [Photobacterium sp. AK15]
Length = 485
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 236/494 (47%), Gaps = 26/494 (5%)
Query: 1 MGGNRT-IVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQS 58
M ++T +VWFR DLR+ DN AL AA R +V ++T P + + + +++
Sbjct: 1 MANSKTGLVWFRADLRVVDNTALTAACQRSDNVIAIFTSTPMQWHEHNVAPIQVDLIQRR 60
Query: 59 LSYLGQSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIK 115
L L L +G L++ + E ++ E + V N Y+ RD
Sbjct: 61 LGVLRSQLAEIGIPLLINEVADFEEAAKSVCEQAQKHQVNHVYCNKQYEWNEQKRDEITG 120
Query: 116 EKLVELGISVQSYNGDLLYEPWEIYDERG---HAFTTFDAYWDKCLQMQMEPASILPPWR 172
L E GI +++ + EP ++ + G FT F W + ++ M +P +
Sbjct: 121 HLLSEQGIKFSAFDDACIIEPGKVQTKNGDPYKVFTPFRKEWLRLFRLAMPKVQSVP--Q 178
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ + + T E L + D+ E + W + L F + Y++ R
Sbjct: 179 VKKESETSVSSLSEALFVHDKIELTYPKKDSLQWPVDEDAIRQRLRTFCSEKAQIYHEQR 238
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLRE 291
+ TS LSPYL G LS R QC+ +L F+ ES F +L + RE
Sbjct: 239 DIPAIDGTSCLSPYLTHGALSPR---QCV--SALLEVFPHCFDEPESGAFSWLNEIIWRE 293
Query: 292 YSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
+ R+L FP + ++P S + W + AW+QGRTG+P+VDA MR+L TGW+
Sbjct: 294 FYRHLMVAFPRLSRDQPFQSWTRNISWRQSESDLAAWQQGRTGFPIVDAAMRQLKETGWM 353
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR+R+I +SF K LL+ WR G ++F L+D DL + GWQ+ + + D R+
Sbjct: 354 HNRLRMITASFLTKDLLINWREGERWFMSQLVDGDLAANNGGWQWAASTGTDAQPYFRVF 413
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
+P QG +FDP+G+++R W+ EL +P ++IH P P V +NYP PI+D
Sbjct: 414 NPTTQGERFDPDGKFIRTWVHELKDVPDKFIHQPHSWPGAV--------QINYPAPIVDH 465
Query: 471 DLGRERLTQAIFKM 484
R +A FK+
Sbjct: 466 KSARLAAIEA-FKI 478
>gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 492
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 234/497 (47%), Gaps = 33/497 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYL 62
+VW R DLR+ DN AL AA +D SV V+ P E+ P + + +L ++L+ +
Sbjct: 9 VVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAA--FLLENLTLV 66
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L G L + A+ L++ + +AT + +N+ Y+ +RD +K++L
Sbjct: 67 QHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQVKDRLA 126
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ + Y+ LL P + G + F + ++ +E + P A
Sbjct: 127 D-SVVFHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVP------APD 179
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
G I++ + + G A + L F + + Y + R
Sbjct: 180 ARGEPIDNTVELAPFSYPQREVDSEDFPRGERAALQQLRRFCREQVQDYDQQRDFPALPG 239
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCF 298
TS LSPYL G +S R+ F L + + E +E F + + RE+ R+L
Sbjct: 240 TSKLSPYLALGIVSPRQCFNRLRAE-----CPDMLERREGGAFTWFNELVWREFYRHLIV 294
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++P RP + ++ W + AW+QGRTGYP+VDA MR+L TGW+HNR+R+I
Sbjct: 295 SWPQLCKHRPFTAWTQWVKWRESPKDLAAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMI 354
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
+SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG
Sbjct: 355 CASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 414
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDPEG ++R WLPELA +P + IH P W A LNYP PI+D R+
Sbjct: 415 RFDPEGRFIRHWLPELAAVPDKDIHQPHRW--------ADKHHHQLNYPLPIVDHKTARQ 466
Query: 476 RLTQAIFKMWEMEAADN 492
A + ADN
Sbjct: 467 NTLAAFEAAKNIGMADN 483
>gi|399992584|ref|YP_006572824.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398657139|gb|AFO91105.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 479
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 239/476 (50%), Gaps = 19/476 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I W RRDLR+ DNPALAAA G V PV+ + +E G R+ L L++L +
Sbjct: 12 IWWVRRDLRLADNPALAAAVAAGVPVIPVFIFETLDEDL---GAAPRFRLGLGLAHLAKE 68
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ GA L+L + + L + I+ A V + YDP ++ RD IKE+L GI+
Sbjct: 69 LEQRGARLILRRGPAQ-EVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQGIAA 127
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S+ G LL+EPW + + G + + YW ++ I P R+ A +
Sbjct: 128 KSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVD-GLIAAPSRIPAPAHWPTSDDL 186
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ + + ++ ++ + G A + L EF++ + Y ++R ++TS LS
Sbjct: 187 DSWQMAAAMRRGAD-VVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDATSGLSE 245
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
L +GE+S R+ +W + E GK FL+ + RE++ +L F+ P
Sbjct: 246 NLAWGEISPRR----MWHHGL----EARRAGKSGAEHFLKEIVWREFAYHLMFHTPHILT 297
Query: 306 RPLLSNLKYFPW-HADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
R ++F W D AWR+G+TGY VDA MREL+ TG +HNR R+IV+SF K
Sbjct: 298 RNWRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTK 357
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
+L WR G ++F + L+D D + +GWQ+++GS PD R+ +P+ Q KFDP+G
Sbjct: 358 HMLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGR 417
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
Y W+ E P + + A P + + + +P +DL GR R +A
Sbjct: 418 YQSAWIAEGQANPPQTALDFYRATPLSWELSPQD---TRAEPFLDLKEGRARALEA 470
>gi|366158602|ref|ZP_09458464.1| deoxyribodipyrimidine photolyase [Escherichia sp. TW09308]
Length = 472
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 239/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ ++ L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPRQWATHNMSPRQAEFINAQLNTLQI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L G L LF AA +E + + + T + +N+ Y+ RD +++ L
Sbjct: 65 MLAEKGIPL-LFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEVNERARDALVEKTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++G ++ P + E FT F W K L+ + P + P V+++
Sbjct: 122 HNVVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGI-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I S L +S +++ + A L +F + Y + R
Sbjct: 179 GSIAPPSSITLNYPRQSFDTAHFPVEE------KTAIAQLRQFCQSGAGEYEQQRNFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALEGGAG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
P RP ++ W ++ + KAW++G+TGYP+VDA MR+L TGW+HNR+R+
Sbjct: 287 TYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNGTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW + AGV L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKLVHEPW----KWAEKAGVR--LDYPQPIVDHKEARVR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 149/476 (31%), Positives = 235/476 (49%), Gaps = 33/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + + + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLLIIRGKPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAAG- 178
GI V+++ LL P ++ +T + +W Q+ + P ++ L + G
Sbjct: 120 KGIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNEGE 179
Query: 179 ----TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
TI+ ++E+LG N L +PG A+ L EF + + Y ++R
Sbjct: 180 KLTETINLPTLENLGF-----TWQNPL---PLTPGEKAANSTLEEFCQGVINNYQEDRNF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R + W + L E K+S+ + + + RE+
Sbjct: 232 PAVDGTSRLSAALKFGTIGIRTI----WTATLELLENCRAQEAKDSIITWQQELAWREFY 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP ++FPW + +F+AW QG+TGYP+VDA MR+L TGW+HNR
Sbjct: 288 QHCLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 348 CRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 406
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+RQWLPELA + TE++ + + G YP+PI+D
Sbjct: 407 SQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEPIVD 455
>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
Length = 473
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 232/477 (48%), Gaps = 20/477 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
I+WFRRDLR+ D+PALAAA G + P++ EGQ G + L S+ L +S
Sbjct: 8 ILWFRRDLRLGDHPALAAAVATGRPIVPLFIHDEVVEGQ---GAAPKMRLGFSVEALDRS 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L G+ LVL + + L L + I+ A V ++ LYDP+S RD ++K L + G++
Sbjct: 65 LHGTGSRLVLRRGRA-LDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSALKDDGVTA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
QS+ G LL+EPW + + G + F W K ++ P S P RL ++
Sbjct: 124 QSFAGHLLFEPWTVETKTGGFYKVFTPMW-KAVRGTDLPVSTPAPNRLEAPQEWPASDAL 182
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D + D + +L + G A L F+ + + Y NR + TS LS
Sbjct: 183 ADWAM-DAAMMRGRDVLAAFCTVGEQAALSRLETFINERVGNYQTNRDLPRVDGTSRLSE 241
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
L +GE++ + W G FL+ + RE++ +L + P
Sbjct: 242 NLTYGEIAPLTCWHAGWAAL--------NHGDADAEVFLKELVWREFAYHLVHHTPHITT 293
Query: 306 RPLLSNLKYFPWHADLGNFKA--WRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAV 363
+ F W+ D + KA W+QGRTG VDA MRE++ TG +HNR R+IV+S+
Sbjct: 294 DNWKPDWDGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVASYLT 353
Query: 364 KVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEG 423
K L+ W+ G+K+F D L+D D + +GWQ+ SGS PD R+ +P Q KFD
Sbjct: 354 KHLMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNPVTQLDKFDKNR 413
Query: 424 EYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
EYV +W+ E P +DA P + ++ +YP P++ + GR+ A
Sbjct: 414 EYVDRWIAEGRSQPHADALRYFDAVP---EHWAIKPTDDYPAPVVSAEDGRKAALDA 467
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 227/475 (47%), Gaps = 35/475 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VW R DLRI DN AL AA RD V ++ P++ + P + + ++ +L L
Sbjct: 5 LVWLRNDLRITDNKALYAACRDPQAQVVALFIATPQQWRRHEMAPRQAA--FIYANLLQL 62
Query: 63 GQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L G LV+ + + AA L + A + +N Y+ RD ++ L
Sbjct: 63 RSQLAQRGIPLVVQQCDDFAAAARWLTDYCRATGVDALFYNRQYELNERRRDRQVESALA 122
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
E ++ +++ LL P + G + F + LQ + P V+A G
Sbjct: 123 ET-LTCHAFDDALLLPPGSVQTGSGEMYQVFTPFRKAFLQRLLSVDVHSLPAPSVRAGGA 181
Query: 180 I-DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I + + E D ++ + PG +A + L F + + Y + R +
Sbjct: 182 IAEPAAPEPFAYPDAEWDAA-------FPPGEEHALRRLRAFCREQVEDYRQQRDFPALD 234
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLC 297
+TS LSPYL G LS R+ F L + + ES F +L + RE+ R+L
Sbjct: 235 ATSGLSPYLALGVLSPRQCFNRLRLT-----CPDLLTQPESGAFTWLNELIWREFYRHLL 289
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
P RP + W+ D +AW+QGRTGYP+VDA MR+L TGW+HNR+R+
Sbjct: 290 VAHPALCRHRPFIGWTDAVRWNPDAEALQAWQQGRTGYPIVDAAMRQLNHTGWMHNRLRM 349
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF VK LL+ WR G +YF LLD D + GWQ+ + + D R+ +P QG
Sbjct: 350 IVASFLVKDLLIDWRAGERYFMRQLLDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQG 409
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIID 469
+FDP+G ++R+WLPELA +P +HHP W A + L YP PI+D
Sbjct: 410 ERFDPQGAFIRKWLPELADVPDNELHHPHRW--------AEQQGVALAYPPPIVD 456
>gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
Length = 476
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/485 (29%), Positives = 229/485 (47%), Gaps = 46/485 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL A ++ V ++T P + + + ++ +L L
Sbjct: 8 LVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNLSH 67
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L L L L +++ A +++ + T + FNH Y RD + E L
Sbjct: 68 ALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLAH- 126
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM-EPASILPPWRLVQAAGTI 180
+V Y+ ++ P + ++G + F + L++ + + + LP + +
Sbjct: 127 NTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQKAV 186
Query: 181 DGCSIEDLGLEDESEK----SSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
S L S K S A L R L +F + ++ Y K R
Sbjct: 187 SPLSAPLFALPISSTKMFPASEQAALQR------------LKQFCYERVIHYAKWRDIPA 234
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRY 295
+ TS LSPYL G +SVR+ F L+ + + E S TF + + RE+ ++
Sbjct: 235 IDGTSQLSPYLAIGLVSVRQCFNRLYQTE-----PDFLENNHSSTFVWFNELVWREFYQH 289
Query: 296 LCFNFPFTHER----PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
L P ++ P N++ W D F AW QG TG+P++DA MR+L TGW+H
Sbjct: 290 LIVANPSLSKQIAFQPWTENIR---WRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMH 346
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++ +SF VK LL+ WRWG YF L+D D + GWQ+ + + D R+ +
Sbjct: 347 NRLRMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFN 406
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELG--LNYPKPIID 469
P QG KFDP+GE++R WLPELA +P +IH P ++ G L+YP+PI+D
Sbjct: 407 PTTQGRKFDPDGEFIRHWLPELADVPDRYIHTP--------SEWAIKTGHYLDYPQPIVD 458
Query: 470 LDLGR 474
R
Sbjct: 459 HAKAR 463
>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
Manfredo]
gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
str. Manfredo]
Length = 469
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 141/498 (28%), Positives = 237/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA A S KE+ R ++ L++ +
Sbjct: 3 SVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 62 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 121 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 180
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ +I +D+ DE A K L F++ L Y+ NR
Sbjct: 181 LRTVESIKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 221
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 222 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 271
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 272 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 331
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 332 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 391
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
Q +FDP+GE+++ +LP+L +P +++H PW P + ++ +G +YP+PI+D
Sbjct: 392 TQSKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 451
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 452 RE---QAIAKYEWAKEKA 466
>gi|421519218|ref|ZP_15965890.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO579]
gi|404346203|gb|EJZ72554.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO579]
Length = 476
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCLALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 59
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 60 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLRE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 120 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 167
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 228 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 282
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 283 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 342
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 343 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 402
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 403 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 454
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 455 LKASRERALAAF 466
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/476 (31%), Positives = 233/476 (48%), Gaps = 33/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLLIICGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAAG- 178
GI V+++ LL+ P ++ +T + +W Q+ + P ++ L + G
Sbjct: 120 KGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPTTLENLQGLDENEGD 179
Query: 179 ----TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
TI+ ++E+LG N L +PG A L EF + + Y ++R
Sbjct: 180 KLTETINLPTLENLGF-----TWQNPL---PLTPGEKAAHSRLEEFCQGVINNYQEDRNF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R + W + L E K S+ + + + RE+
Sbjct: 232 PAFDGTSRLSAALKFGAIGIRTI----WTATLELLENCRAEEAKNSIITWQQELAWREFY 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP E ++FPW + +F+AW QG+TGYP+VDA MR+L TGW+HNR
Sbjct: 288 QHCLYFFPELAEGAYRKEFRHFPWQDNEEHFQAWCQGQTGYPIVDAAMRQLNETGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 348 CRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 406
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+RQWLPELA + TE++ + + G YP+PI+D
Sbjct: 407 SQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEPIVD 455
>gi|77362362|ref|YP_341936.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
TAC125]
gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
haloplanktis TAC125]
Length = 468
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 154/489 (31%), Positives = 233/489 (47%), Gaps = 33/489 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+ WFRRDLR+ N AL A +G+ ++ C K+ Q + LK+ ++YL Q
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGANHAIFFICEKQWQQHQAAPIQIDLLKRRITYLHQQ 62
Query: 66 LKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L G L + L++ A V+ N Y+ + RD +I K EL
Sbjct: 63 LADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAKCDELS 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I+ Y GDL+ + ++ + F + L+ +E LP W + +G G
Sbjct: 123 ITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQWPVEHVSG---G 179
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADK----VLTEFVEQHLLRYYKNRQKLGGN 238
+ S+ +N L G S W DK V+ F+ L Y +R
Sbjct: 180 AQL--------SKNETNLLKGDSSSEKWPVDDKTLATVVDNFICDKLTSYDDHRDIPSIK 231
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLC 297
TS LSPYL G +S +++ + I + +S TF ++ + RE+ R+L
Sbjct: 232 GTSGLSPYLALGIISTKQL-----LINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLI 286
Query: 298 FNFPFTHERPLLSNLKY--FPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
FP R N KY W + +FKAW +GRTGYPLVDA MR+L TGW+HNR+R
Sbjct: 287 AQFP-KLSRGDNFNEKYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLR 345
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V+SF K LL+ WR G ++F L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 346 MVVASFLTKHLLIDWRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQ 405
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
+FDP GE++R+++PEL +P + IH P + L + G +P I+D RE
Sbjct: 406 SERFDPNGEFIRKYIPELENVPDKHIHF----PHSYLASLGQSDSCYWP-AIVDHKAARE 460
Query: 476 RLTQAIFKM 484
R A FK+
Sbjct: 461 R-ALAAFKV 468
>gi|440680804|ref|YP_007155599.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
gi|428677923|gb|AFZ56689.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
Length = 478
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 242/492 (49%), Gaps = 44/492 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLRI D+ LA A R+ S V +C + P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDHTGLAKA-REQSAKVVGVFCLDPDILQRDDIAPARVT--YMIGCLQAL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ G++L++ + + ++ + + +A++A V +N +P S RD ++ + L E G
Sbjct: 63 QKRYNQAGSQLLILQG-NPVSVIPDLAAALQAKAVFWNWDVEPYSQTRDIAVIDSLTEKG 121
Query: 123 ISVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPW--------R 172
I ++N D LL+ P EI+ +T + +W + + + P LP +
Sbjct: 122 IQFLNHNWDQLLHSPTEIFSGSKTPYTVYTPFWKNWISKPKATPVETLPNFAGLTAQEQE 181
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ Q AG I+ S +DLG + E PG + A + L F + Y + R
Sbjct: 182 IAQQAGAINLPSAQDLGFIWDGELVIE--------PGEAAAQERLETFTHSMINGYQEQR 233
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLRE 291
+ TS LS L FG + +R V W I + N E S+ + + + RE
Sbjct: 234 NFPAIDGTSQLSAALKFGVIGIRTV----WQATIEALENSNSEEVTASIRTWQQELAWRE 289
Query: 292 YSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+ ++ + FP + + K FPW + +F+AW +G+TGYP+VDA MR+L GW+H
Sbjct: 290 FYQHAMYYFPDLADGAYRDSFKSFPWQNNEKHFQAWCEGKTGYPIVDAAMRQLNEIGWMH 349
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR R+IV+SF K L++ +WG KYF L+D DL + GWQ+ + S D L R+ +
Sbjct: 350 NRCRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL-RIFN 408
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P Q KFD EGEY+RQW+ EL + TE++ N+ +G YP PI+D
Sbjct: 409 PASQAQKFDGEGEYIRQWVSELKSVDTEYL-----VSGNITPLERRSIG--YPAPIVD-- 459
Query: 472 LGRERLTQAIFK 483
+ QA+FK
Sbjct: 460 ---HKKQQALFK 468
>gi|435847076|ref|YP_007309326.1| deoxyribodipyrimidine photolyase [Natronococcus occultus SP4]
gi|433673344|gb|AGB37536.1| deoxyribodipyrimidine photolyase [Natronococcus occultus SP4]
Length = 468
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 144/464 (31%), Positives = 221/464 (47%), Gaps = 22/464 (4%)
Query: 9 WFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKS 68
W R DLR DN LA AARD V P+Y P P RV+ L ++L L +
Sbjct: 5 WHRSDLRAVDNRGLARAARDDRVLPLYVLDPTVLEHASPVRVA--CLLEALGALRSWYRD 62
Query: 69 LGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSY 128
G ++++ + +++ L + A +VV+N ++ RD +++ L ++G+ +S
Sbjct: 63 RGGDVLVVRGDAS-EVLPAVATDRDAARVVWNEDVGGLAQRRDSAVRTALEDVGVDHESV 121
Query: 129 NGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQ-MEPASILPPWRLVQAAGTIDGC-SIE 186
L +EP I G ++ F +W K + +PA+ L G S+
Sbjct: 122 VDGLHHEPGSISPNEGEHYSVFSYFWKKWRDREKADPAAAPTGEDLAGFEGERGSLPSVA 181
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
DLG ED + A + L F + RY +R TS LS +
Sbjct: 182 DLGFEDPEADPQPVTR--------TAARERLEAFCSGPIYRYADDRDVPAAAGTSRLSVH 233
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRYLCFNFPFTHE 305
+G + R+V+ + E+ +ESVT F R + RE Y+ L FN P +
Sbjct: 234 FKWGTIGPREVYAATERAR---EDAESEAERESVTAFRRQLAFREFYAHVLAFN-PESVT 289
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
L + W D AW G TGYP+VDAGMR+L GW+HNR+R++ +SF K
Sbjct: 290 ENLKTGENAIEWRNDPDELAAWTTGETGYPIVDAGMRQLRTDGWVHNRVRMLAASFLTKD 349
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL+ WR G ++ L D + D+ GWQ+ + + D R+ +P QG ++DP+ EY
Sbjct: 350 LLIDWRKGYDWYRRHLADHETASDVAGWQWAASTGADAQPYFRVFNPMKQGREYDPDAEY 409
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+R+ +PELA +P E IH WD ++ A EL YP+PI+D
Sbjct: 410 IREHVPELADVPAERIHE-WD---ELVPADRAELAPAYPEPIVD 449
>gi|421170445|ref|ZP_15628397.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
700888]
gi|404523383|gb|EKA33807.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
700888]
Length = 481
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 151/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
+VWFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 7 NLVWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 64
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 65 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLRE 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 125 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 172
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 287
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 288 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 348 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 407
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 408 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 459
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 460 LKASRERALAAF 471
>gi|427705816|ref|YP_007048193.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
gi|427358321|gb|AFY41043.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
Length = 479
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 156/482 (32%), Positives = 238/482 (49%), Gaps = 47/482 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
+ W RRDLRI DN LA A R S V +C E P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNTGLATA-RSQSPKVVGVFCLDRNILERDDIAPVRVT--YMIGCLQAL 62
Query: 63 GQSLKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ +G++L++ ++ + AL E A+ A V +N +P S +RD +I + L
Sbjct: 63 QERYAQIGSQLLILHADAMEVIPALAE---ALNAKAVFWNWDVEPYSQIRDRNIIDALKA 119
Query: 121 LGISVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPASIL--------PP 170
GI S N D L+ P EI +T + +W + + P + L
Sbjct: 120 KGIQFLSENWDQTLHSPAEIRTGSNTPYTVYTPFWKNWTSKPKAPPVATLQTVEGLTPAE 179
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
+ Q AG I + +DLG +S+ +L SPG ++A L EF + + Y +
Sbjct: 180 QEIAQNAGAIPLPTAKDLGFIWDSD----LIL----SPGEASAQARLAEFTYKTITEYQE 231
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVT---FFLRAM 287
R + TS LS L FG + +R V+Q A +EN +E+ T + + +
Sbjct: 232 QRNFPATDGTSQLSAALKFGAIGIRTVWQATV------AAQENSRSEETTTSIRTWQQEL 285
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ ++ ++FP E K FPW + +F+AW +G+TGYP+VDA MR+L +
Sbjct: 286 AWREFYQHAMYSFPELAEGAYRDAFKNFPWETNDAHFQAWCEGKTGYPIVDAAMRQLNQS 345
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR R+IV+SF K LL+ + G KYF L+D DL + GWQ+ + S D L
Sbjct: 346 GWMHNRCRMIVASFLTKDLLISPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL- 404
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFDP+GEY+R+WLPEL + E++ P ++YP+PI
Sbjct: 405 RIFNPASQTQKFDPDGEYIRRWLPELRSIDNEYLVTGKITPLE-------RRAVSYPEPI 457
Query: 468 ID 469
+D
Sbjct: 458 VD 459
>gi|38232742|ref|NP_938509.1| riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC
13129]
gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae]
Length = 446
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 212/454 (46%), Gaps = 49/454 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPWR 172
+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP-- 179
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
T +I DLG + S + + W+PG A + L E ++ L RY +R
Sbjct: 180 ---IDDTETQAAIADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLDDR 231
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ + TS LSP L FGELSV +V W EG F R + R++
Sbjct: 232 DRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDF 275
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWATG 348
+ + P + +FPW D G+F+A WR GRTG LVDAGMRELWATG
Sbjct: 276 AWHRLDAHPDMATANIRPEFDHFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWATG 333
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
+HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D R
Sbjct: 334 TMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFR 393
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPEL-ARMPTEWI 441
+ +P+ Q +FDP+G Y +WLP + A P E I
Sbjct: 394 IFNPDTQARRFDPDGTYRTRWLPIMSADYPEEAI 427
>gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
Length = 481
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 64
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 65 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLRE 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 125 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 172
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 287
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 288 EFYKHILVGYPRVSRHRPFREETEALCWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 348 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 407
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 408 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 459
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 460 LKASRERALAAF 471
>gi|425070372|ref|ZP_18473485.1| hypothetical protein HMPREF1311_03580 [Proteus mirabilis WGLW6]
gi|404595155|gb|EKA95708.1| hypothetical protein HMPREF1311_03580 [Proteus mirabilis WGLW6]
Length = 476
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 228/485 (47%), Gaps = 46/485 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL A ++ V ++T P + + + ++ +L L
Sbjct: 8 LVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNLSH 67
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL L L L +++ A +++ + T + FNH Y RD + E L
Sbjct: 68 SLAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLAH- 126
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM-EPASILPPWRLVQAAGTI 180
+V Y+ ++ P + ++G + F + L++ + + + LPP + +
Sbjct: 127 NTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPPPEIRAHQKAV 186
Query: 181 DGCSIEDLGLEDESEK----SSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
S L S K S A L R L +F + ++ Y K R
Sbjct: 187 SPLSAPLFALPISSTKMFPASEQAALQR------------LKQFCYERVIHYAKWRDIPA 234
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRY 295
+ TS LSPYL G +SVR+ F L+ + + E S F + + RE+ ++
Sbjct: 235 IDGTSKLSPYLAIGLVSVRQCFNRLYQTE-----PDFLENNHSSAFVWFNELVWREFYQH 289
Query: 296 LCFNFPFTHER----PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
L P ++ P N++ W D F AW QG TG+P++DA MR+L TGW+H
Sbjct: 290 LIVANPSLSKQIAFQPWTENIR---WRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMH 346
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++ +SF VK LL+ WRWG YF L+D D + GWQ+ + + D R+ +
Sbjct: 347 NRLRMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFN 406
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELG--LNYPKPIID 469
P QG KFDP+GE++R WLPELA +P IH P ++ G L+YP+PI+D
Sbjct: 407 PTTQGRKFDPDGEFIRHWLPELADVPDRDIHTP--------SEWAIKTGHYLDYPQPIVD 458
Query: 470 LDLGR 474
R
Sbjct: 459 HAKAR 463
>gi|375289840|ref|YP_005124380.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|376244673|ref|YP_005134912.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC01]
gi|371579511|gb|AEX43178.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|372107303|gb|AEX73364.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC01]
Length = 446
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 209/446 (46%), Gaps = 48/446 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPWR 172
G+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HGVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKSAQP-- 179
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
T +I DLG + S + + W+PG A + L E ++ L RY ++R
Sbjct: 180 ---IDDTETQAAIADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLEDR 231
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ + TS LSP L FGELSV +V W EG F R + R++
Sbjct: 232 DRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDF 275
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWATG 348
+ + P + FPW D G+F+A WR GRTG LVD GMRELWATG
Sbjct: 276 AWHRLDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDTGMRELWATG 333
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
+HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D R
Sbjct: 334 TMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFR 393
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELA 434
+ +P+ Q +FDP+G Y +WLP ++
Sbjct: 394 IFNPDTQARRFDPDGTYRTRWLPIMS 419
>gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2]
gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
gi|420141848|ref|ZP_14649487.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CIG1]
gi|421156086|ref|ZP_15615540.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
14886]
gi|421163219|ref|ZP_15621946.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
25324]
gi|421182722|ref|ZP_15640194.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa E2]
gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
gi|403245405|gb|EJY59222.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CIG1]
gi|404519465|gb|EKA30217.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
14886]
gi|404529467|gb|EKA39503.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
25324]
gi|404541468|gb|EKA50825.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa E2]
Length = 481
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 64
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 65 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLRE 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 125 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 172
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 287
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 288 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 348 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 407
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 408 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 459
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 460 LKASRERALAAF 471
>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
Length = 487
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 230/476 (48%), Gaps = 27/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL AA +D SV V+ P + +L+Q+L +L
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQHLQA 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L + G L + + A+ L++ + + ++ Y+ +RD ++ +L E
Sbjct: 65 ALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I+ QS++ +L P + + F + +Q + M +P + A +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L D ++S ++ L + G A + L F + + Y + R T
Sbjct: 185 ----LSPLPF-DYPQQSVDSQL---FPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGT 236
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G LS R+ F LW + E E +S F +L + RE+ R+L
Sbjct: 237 SCLSPYLVLGVLSPRQCFNRLWAE-----SPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ KAW+QG+TGYP+VDA MR++ TGW+HNR+R+I
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD +G ++R+WLPELA +P IH PW A + L+YP P++D R
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWR------WAERQQQHLDYPVPLVDHKQAR 461
>gi|417139698|ref|ZP_11983120.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
gi|417307171|ref|ZP_12094045.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|338771226|gb|EGP25972.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|386157426|gb|EIH13768.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
Length = 472
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 240/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLNGLRI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E I + A T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP + W + +FKAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++R+WLPEL +P + +H PW ++ AGV L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRRWLPELRDVPGKAVHEPW----KWVQKAGVT--LDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 478
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 219/468 (46%), Gaps = 31/468 (6%)
Query: 8 VWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLK 67
VWFRRDLR+ DNPAL A ++G Y K+ + R ++Q L L QSL
Sbjct: 7 VWFRRDLRVHDNPALFHAMKNGQCIAFYCLAQKQWDEHQVSLRQRSLIRQQLEDLTQSLA 66
Query: 68 SLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+LG L++ T +S + + ++ N Y+ + ++ E L + I
Sbjct: 67 ALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEALQQQDIK 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGT-IDG 182
Y+ L +P I +++ + F A+ L Q+ + + P + QA D
Sbjct: 127 CHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPKKQQAPKVKTDI 186
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
+++ + D W A L EF + + Y ++R + TS
Sbjct: 187 SALQSIAQVDIDP----------WQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTST 236
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF 302
LSPYL G LSVR QC M Q + EG + + + R++ R+L + FP
Sbjct: 237 LSPYLAIGSLSVR---QCWQMSQQVSPSGSKPEG---IATWQSELIWRDFYRHLIYFFPH 290
Query: 303 THE-RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ + + PW D F+AW GRTGYPLVDA MR+L TGW+HNR+R++ + F
Sbjct: 291 VCQYKAFKQETDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMF 350
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K L + WR G YF L+D DL + GWQ+ + + D R+ +P Q +FD
Sbjct: 351 LSKHLFIDWRLGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDS 410
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+G ++RQ++PELA + + IH+P P V K L YP PI+D
Sbjct: 411 KGTFLRQYVPELASLDDKRIHNP--DPITVKK-------LGYPAPIVD 449
>gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
Length = 472
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 240/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALA A R+ S V +Y P + ++ L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQWAAHSMSPRQAEFINAQLNGLQI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + + T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERAL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+ID L +S +++ + A L +F + + +Y + R
Sbjct: 179 GSIDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGVGQYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G S R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGGSPR---QCL--HRLLAEQPQALEGGAG-SVWLNELIWREFYRHLI 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPTLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW + AGV L+YP+PI+D R R
Sbjct: 407 EKFDHEGEFIRQWLPELRDVPGKAVHEPW----KWAQKAGVR--LDYPEPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|422369015|ref|ZP_16449418.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
gi|432897527|ref|ZP_20108436.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE192]
gi|433027697|ref|ZP_20215572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE109]
gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
gi|431429573|gb|ELH11501.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE192]
gi|431545767|gb|ELI20414.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE109]
Length = 472
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 237/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT+F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|378768089|ref|YP_005196559.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
gi|365187572|emb|CCF10522.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
Length = 475
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 229/483 (47%), Gaps = 27/483 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI DN AL AA D V ++ P + Q ++ QSL L
Sbjct: 5 LVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLDMLQS 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL G L + + A+ L+ + K+ +N+ Y+ RD S +++L E
Sbjct: 65 SLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKRLHEA 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAAGTI 180
+ Q ++ LL P I G + F + L Q+Q +P + + A
Sbjct: 125 NVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRQLQQGLPECVPAPKAREGAPLK 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ S+ +S + PG A K L EF +Q +L Y K R +ST
Sbjct: 185 EPKSLPPFDYPKADIDTS------LFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDST 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL G LS R QCL +IL + + E + + + + RE+ R+L
Sbjct: 239 SRLSVYLSTGVLSPR---QCL--HRILHEQPKALESSPAAVW-INELIWREFYRHLIVAH 292
Query: 301 P-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P +P + + W + +F AW+ G+TGYP+VDA MR++ GW+HNR+R+I +
Sbjct: 293 PRLCKHQPFVHWTRNVAWQRNSVHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITA 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +F
Sbjct: 353 SFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWD-APPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
D EGE++R++LPEL +P IH P A N K L+YP PI++ R++
Sbjct: 413 DKEGEFIRRYLPELKEVPDSDIHQPHQWAQKNNKK-------LDYPAPIVEHKDARKKTL 465
Query: 479 QAI 481
A
Sbjct: 466 DAF 468
>gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
Length = 501
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 154/522 (29%), Positives = 242/522 (46%), Gaps = 47/522 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS--------VFPVYTWCPKEEGQFYPGRVSRWWLKQ 57
+VW+R DLR+ + L AA + S VY C + + + RW++ +
Sbjct: 2 NLVWYRNDLRVAAHSPLQAALSESSGEAVSGPRALAVYCLCQGQWDRHQVAPLRRWYVLE 61
Query: 58 SLSYLGQSLKSLGAELVLFKTESTLAALLECISAIK----ATKVVFNHLYDPVSLVRDHS 113
S+ LG++L G +L + + + T AA+ E ++ T + N Y RD +
Sbjct: 62 SVRELGEALARRGIDLHVLEAD-TFAAVPEVLAQFAQEHGVTHLYCNREYPLNEKQRDKA 120
Query: 114 IKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILPP 170
+ E+L G+S+Q ++ +L P + +G +T F AY WD + + PP
Sbjct: 121 VAERLRGQGVSLQGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWMADHHPAVTPAPP 180
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
G G ++ D L+ S + L + W PG A + L +FVEQ L Y +
Sbjct: 181 --ESDHRGNFVGAAVVDKALKALSVPEA---LTQQWLPGEEAAWQQLDQFVEQALAGYRR 235
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
R TS LS L G LSV ++ Q + + ++ T ++ + R
Sbjct: 236 QRDFPDIAGTSGLSAALSAGALSVASCYRA--ASQAM----ADAGSRDGATCWIGELAWR 289
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
++ R + FP + + W D F AW +GRTGYPLVDA MR+L ATGW
Sbjct: 290 DFYRQIMAQFPRVSRGQAFRPETDLLQWDQDDERFAAWCEGRTGYPLVDAAMRQLVATGW 349
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++ + F K L L WR G +F L+D D + GWQ+ + + D R+
Sbjct: 350 MHNRLRMVTAMFLSKHLWLDWRRGEAFFMAHLMDGDFAANNGGWQWSASAGTDAVPYFRV 409
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P QG +FD EG ++ +W+PEL + ++ IH PW P L +YP PI+
Sbjct: 410 FNPVRQGQRFDSEGRFIARWVPELRGLDSKQIHEPWKQP---------LLAPDYPPPIVP 460
Query: 470 LDLGRERLTQAIFKMWEME---------AADNAMDSNGTNEV 502
RER+T A FK + + A D+ MD+ G +
Sbjct: 461 HAGVRERVTTA-FKAAKTQFDQEQSMGSAMDDNMDNTGKGKA 501
>gi|424944563|ref|ZP_18360326.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCMG1179]
gi|346061009|dbj|GAA20892.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCMG1179]
Length = 476
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWQEHDDAPCKVD-FWLR-NLGELQ 59
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 60 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLRE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 120 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 167
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 228 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 282
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 283 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 342
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 343 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 402
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 403 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 454
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 455 LKASRERALAAF 466
>gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1]
gi|416874241|ref|ZP_11918010.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 152504]
gi|334843645|gb|EGM22231.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 152504]
Length = 481
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 64
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 65 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLRE 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 125 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 172
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 287
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 288 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 348 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 407
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 408 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 459
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 460 LKASRERALAAF 471
>gi|403673771|ref|ZP_10936055.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. NCTC 10304]
Length = 480
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 245/493 (49%), Gaps = 42/493 (8%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI-----LP--- 169
L + G + ++ ++ I ++ + F A+ C +++ + + +P
Sbjct: 121 LNQHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACY-TKLDTSGLPQCYPVPNKQ 179
Query: 170 ---PWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
P +Q ID IE L S++ + W G A + L +F+E+ +
Sbjct: 180 NEVPLDFLQGKN-IDLDEIEKLFFSSISKEQQDL-----WPVGEQYALEQLDQFIEESVC 233
Query: 227 RYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTF 282
Y R +TS LSPYL+ G LS+R+ Q L+ Q NF EG+++
Sbjct: 234 HYKLERDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQ-----HGNFHLVNEGQQT--- 285
Query: 283 FLRAMGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGM 341
+L + RE+ +++ F+FP + P N + W+ + + AW+ G+TG P+VDAGM
Sbjct: 286 WLDELLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGQTGIPIVDAGM 345
Query: 342 RELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLP 401
R+L TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + +
Sbjct: 346 RQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGT 405
Query: 402 DGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGL 461
D R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGL
Sbjct: 406 DAVPYFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGL 457
Query: 462 NYPKPIIDLDLGR 474
NYPKPI+DL R
Sbjct: 458 NYPKPIVDLKETR 470
>gi|375133173|ref|YP_005049581.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
Length = 475
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 155/480 (32%), Positives = 229/480 (47%), Gaps = 35/480 (7%)
Query: 7 IVWFRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW RRDLR DN AL A A D +V ++ P + Q + ++ + L L
Sbjct: 3 LVWLRRDLRSVDNTALNEALASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFALQTE 62
Query: 66 LKSLGAEL----VLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L +L L V+ TE+ + A+ E SA+ A +V+ N Y+ RD E+L +
Sbjct: 63 LAALNVPLLYREVVTFTEA-VDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLHQQ 121
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASI-----LPPWRLVQA 176
GI QS++ + P + +++G F F + + Q P I PW L +A
Sbjct: 122 GIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPF-KRAWLTQFSPPRIQASRAAKPWSLPEA 180
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
++ C + SS+A W + L F ++ L Y + R
Sbjct: 181 LQSLLWCESQPFT---HPRVSSDA-----WPVDFDTIRGRLRAFCQEQLDDYKQQRDFPA 232
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRY 295
+ TS LSPYL G LS R+ ++ + + A + + +L + RE Y
Sbjct: 233 QDGTSSLSPYLAIGALSPRQCIARVYAESAMGALSDGAQT------WLSELIWREFYQHL 286
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
L F + + L+ W D F W +G TGYP+VDA MR+L TGW+HNR+R
Sbjct: 287 LTFEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+IV+SF K L + WRWG +YF L+D D + GWQ+ + + DG R+ +P Q
Sbjct: 347 MIVASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
G KFDP+G ++RQW+PELA +P IH AP N GV L YP+PI+D RE
Sbjct: 407 GEKFDPQGRFIRQWVPELATVPEAHIH----APSNW---GGVN-SLLYPQPIVDHKAERE 458
>gi|386060817|ref|YP_005977339.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa M18]
gi|347307123|gb|AEO77237.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa M18]
Length = 476
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 59
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 60 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVGQRLRE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 120 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 167
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 228 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 282
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 283 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 342
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 343 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 402
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 403 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 454
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 455 LKASRERALAAF 466
>gi|424059066|ref|ZP_17796557.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
gi|404669804|gb|EKB37696.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
Length = 480
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 242/489 (49%), Gaps = 34/489 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILPPWRLV 174
L G + ++ ++ I ++ + F A+ C L P P +
Sbjct: 121 LNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK-- 178
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRG----WSPGWSNADKVLTEFVEQHLLRYYK 230
Q +D E++ L DE EK + L + W G A + L +F+E+ + Y
Sbjct: 179 QNEVPLDFLQGENIDL-DEIEKLFCSFLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKV 237
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRA 286
R TS LSPYL+ G LS+R+ Q L+ Q NF EG+++ +L
Sbjct: 238 ERDFPNIQGTSKLSPYLNIGILSIRQCLQALFRNQ-----HGNFHLVNEGQQT---WLDE 289
Query: 287 MGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P + + W+ + + AW+ G+TG P+VDAGMR+L
Sbjct: 290 LLWREFYQHILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLL 349
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 350 QTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVP 409
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPK
Sbjct: 410 YFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGLNYPK 461
Query: 466 PIIDLDLGR 474
PI+DL R
Sbjct: 462 PIVDLKETR 470
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 149/476 (31%), Positives = 237/476 (49%), Gaps = 33/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAAG- 178
GI V+++ LL+ P ++ +T + +W Q+ + P ++ L + G
Sbjct: 120 KGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLEENEGE 179
Query: 179 ----TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
TI+ ++E+LG N L +PG A L EF + + Y ++R
Sbjct: 180 KLTETINLPTLENLGF-----TWQNPL---PLAPGEKAAHSRLEEFCQGVINNYQEDRNF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQC-LWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R ++ L + + A+E K+S+ + + + RE+
Sbjct: 232 PAFDGTSRLSAALKFGAIGIRTIWTATLELLENCCAQE----AKDSIITWQQELAWREFY 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP ++FPW + +F+AW QG+TGYP+VDA MR+L TGW+HNR
Sbjct: 288 QHCLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 348 CRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 406
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+RQWLPELA + TE++ + + G YP+PI+D
Sbjct: 407 SQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEPIVD 455
>gi|392545379|ref|ZP_10292516.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas rubra ATCC
29570]
Length = 459
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 233/487 (47%), Gaps = 43/487 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
T+ WFRRDLR+ N AL AA +G+ ++ C ++ V LK+ + +LG
Sbjct: 3 TLFWFRRDLRVFGNEALIAAVENGARDALFLVCEQQWQAHNAAPVQVDLLKRRVIWLGHK 62
Query: 66 LKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L LG L + A + + A +V N Y+ RD++ ++ G
Sbjct: 63 LAELGIRLHVLDAGDFTQVPAVVSQFCQANGVAQVYANREYEVNEQDRDNACQQA----G 118
Query: 123 ISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
+ +Q ++GDL+ P + +E FT F W K + Q LP W + AA
Sbjct: 119 VQLQLFDGDLIAPPGSVTTASNEMYKVFTPFKKAWLKQYEQQH---FYLPGWPEINAAPF 175
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNAD----KVLTEFVEQHLLRYYKNRQKL 235
++ L G G S W D KV+ F+++ ++ Y NR
Sbjct: 176 --------------EWEAPEILKGEGVSDKWPVDDETLVKVVQAFIQEKMVDYKANRDFP 221
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
G TS LSPYL G +SV+ Q L Q+ +A + ++ + + RE+ R+
Sbjct: 222 GVKGTSGLSPYLALGIVSVK---QLLAESQLHFADLLQMTSAPAFSW-INELIWREFYRH 277
Query: 296 LCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
L +P + W D +FKAW +G TGYP+VDA MR+L TGW+HNR+
Sbjct: 278 LICAYPKLCKGANFNEKYDHVDWQQDDAHFKAWCEGNTGYPIVDAAMRQLNQTGWMHNRL 337
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K LL+ WR G YF L+D DL + GWQ+ + + D R+ +P
Sbjct: 338 RMIVASFLTKHLLIDWRKGEHYFMSKLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIS 397
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q KFDP+G+++R+++PEL+ +P + IH P + L+A G+ Y KPI++ R
Sbjct: 398 QSEKFDPQGDFIRKFVPELSEVPAKSIHFPHE----YLQAFGIS---GYMKPIVEHKAAR 450
Query: 475 ERLTQAI 481
ER A
Sbjct: 451 ERALAAF 457
>gi|386080190|ref|YP_005993715.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
gi|354989371|gb|AER33495.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
Length = 475
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 229/483 (47%), Gaps = 27/483 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI DN AL AA D V ++ P + Q ++ QSL L
Sbjct: 5 LVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLDMLQS 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL G L + + A+ L+ + K+ +N+ Y+ RD S +++L E
Sbjct: 65 SLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKRLHEA 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
+ Q ++ LL P I G + F + L+ +Q +P + + A
Sbjct: 125 NVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREGAPLK 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ S+ +S + PG A K L EF +Q +L Y K R +ST
Sbjct: 185 EPKSLPPFDYPKADIDTS------LFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDST 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL G LS R QCL +IL + + E + + + + RE+ R+L
Sbjct: 239 SRLSVYLSTGVLSPR---QCL--HRILHEQPKALESSPAAVW-INELIWREFYRHLIVAH 292
Query: 301 P-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P +P + + W + +F AW+ G+TGYP+VDA MR++ GW+HNR+R+I +
Sbjct: 293 PRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITA 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +F
Sbjct: 353 SFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWD-APPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
D EGE++R++LPEL +P IH P A N K L+YP PI++ R++
Sbjct: 413 DKEGEFIRRYLPELKEVPDSDIHQPHQWAQKNNKK-------LDYPAPIVEHKDARKKTL 465
Query: 479 QAI 481
A
Sbjct: 466 DAF 468
>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
F]
Length = 487
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 230/476 (48%), Gaps = 27/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL AA +D SV V+ P + +L+Q+L +L
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L + G L + + A+ L++ + + ++ Y+ +RD ++ +L E
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I+ QS++ +L P + + F + +Q + M +P + A +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L D ++S ++ L + G A + L F + + Y + R T
Sbjct: 185 ----LSPLPF-DYPQQSVDSQL---FPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGT 236
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G LS R+ F LW + E E +S F +L + RE+ R+L
Sbjct: 237 SCLSPYLVLGVLSPRQCFNRLWAE-----SPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ KAW+QG+TGYP+VDA MR++ TGW+HNR+R+I
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD +G ++R+WLPELA +P IH PW A + L+YP P++D R
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWR------WAERQQQHLDYPAPLVDHKQAR 461
>gi|424817110|ref|ZP_18242261.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
Length = 472
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 240/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ ++ L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSAHVLALYIATPRQWAAHNMSPRQAEFINAQLNGLQI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF AA +E + + + T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G++D L +S +++ + A L +F + +Y + R
Sbjct: 179 GSLDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGASQYDQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGRLSPR---QCL--HRLLAEQPQALDGGAG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW + AGV L+YP+PI+D R R
Sbjct: 407 EKFDHEGEFIRQWLPELRDVPGKAVHEPW----KWAQKAGVM--LDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|442610110|ref|ZP_21024835.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441748329|emb|CCQ10897.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 462
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 230/486 (47%), Gaps = 37/486 (7%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+ + WFRRDLR N AL A + G+ V+ + + + + + +++LG+
Sbjct: 2 KGLYWFRRDLRYFGNEALIYAIKAGTRNAVFFVSKSQWAEHDAAAIQVDLILRRVAFLGK 61
Query: 65 SLKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L G L + + AL+ ++V N Y+ RD +I L L
Sbjct: 62 ALARYGVTLHIIEAPDFNLQQEALISFCEEHDVSEVYANAEYEINERERDVNIANSLSAL 121
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
++ Y+GD++ +P + G F F + L+ + + PW L A ID
Sbjct: 122 NMAFYLYDGDVIAKPGTVTTNSGEMFKVFTPFKKAWLKQREHYFPSIEPWPL--AEQQID 179
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTE----FVEQHLLRYYKNRQKLGG 237
N L G S W D+ L E F+ + L+ Y R
Sbjct: 180 WAV-------------PNCLASSGESSKWPVDDETLYELVDRFITEKLMDYSAKRDFPSI 226
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYL 296
TS LSPY G +SV++V + IL A + F ++ + RE+ R+L
Sbjct: 227 KGTSGLSPYFALGIVSVKQV-----LAAILQAYPDLLNQPSRPEFSWINELIWREFYRHL 281
Query: 297 CFNFPFTHERPLLSN-LKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
F +P +R +N + W ++ F AW +G+TGYPLVDA MR+L TGW+HNR+R
Sbjct: 282 IFTWPHLCKRRNFNNKYDFVVWRSNQHEFTAWCEGKTGYPLVDAAMRQLNQTGWMHNRLR 341
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
++V+SF K LL+ WR G KYF L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 342 MVVASFLTKHLLIDWRLGEKYFMSKLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPITQ 401
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRE 475
KFDP+G ++R+++ EL +P ++IH P D VLK + +YPKPI+D L RE
Sbjct: 402 SEKFDPKGTFIRKYVTELKEVPDKYIHFPHDYL--VLKPS------DYPKPIVDHKLARE 453
Query: 476 RLTQAI 481
R A
Sbjct: 454 RALAAF 459
>gi|398794137|ref|ZP_10554321.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
gi|398209097|gb|EJM95781.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
Length = 475
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 150/483 (31%), Positives = 225/483 (46%), Gaps = 27/483 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI DN ALAAA RD +V ++ P++ Q + +++Q+L L
Sbjct: 5 LVWLRNDLRINDNMALAAACRDSQATVIALFIATPQQWQQHHMAPKQAAFIQQNLLLLQT 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL G L + + A+ L E + + +N+ Y+ RD +++L
Sbjct: 65 SLAERGIPLHFHQCDDFAASIDYLAEFCQQQQVDALFYNYQYEINERERDARAEKRLDAQ 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
G+ Q ++ LL P + F F + + ++ LP A D
Sbjct: 125 GVICQGFDDSLLLPPGSVQTGSNTMFKVFTPF-SRAFVRRLHQG--LP--ECYHAPKARD 179
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
G I + A + G A K L F +Q + Y R + TS
Sbjct: 180 GAPISIKKKIPAFDYPCEAFDDSLFPAGEEAALKQLRHFAKQAVQHYPDQRDLPAIDGTS 239
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LS YL G LS R QCL ++L + ++ T+ L + RE+ R+L FP
Sbjct: 240 RLSAYLAIGVLSPR---QCL--HRVLKEHPDALNEGKAFTW-LNELIWREFYRHLMVAFP 293
Query: 302 -FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
+P + + W + + KAW+QG+TGYP+VDA MR+L GW+HNR+R+I +S
Sbjct: 294 ALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITAS 353
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +FD
Sbjct: 354 FLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
Query: 421 PEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
+GE++RQWLPEL +P IH P W N L+YP PI+D R++
Sbjct: 414 KQGEFIRQWLPELKEVPDSDIHQPQVWAQKNNK--------KLDYPAPIVDHKDARKKTL 465
Query: 479 QAI 481
A
Sbjct: 466 DAF 468
>gi|422006662|ref|ZP_16353651.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
gi|414098878|gb|EKT60523.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
Length = 480
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 150/483 (31%), Positives = 233/483 (48%), Gaps = 43/483 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++WFR DLR+ DN AL++A D V ++T PK+ Q ++ Q+L+ L
Sbjct: 9 LIWFRNDLRVTDNKALSSACADPDAKVIALFTATPKQWQQHDMAERQISFIHQNLAELQN 68
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL LG LV + A +L+ +A + FN Y+ RD + +
Sbjct: 69 SLAELGIPLVCQTVANFADAAQWVLDYAKTQQADALFFNRQYEWNEKQRDEWLINQ--PH 126
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQME-------PASILPPWRL 173
G+ + +++ LL P + ++G + + + L Q+ + P P +
Sbjct: 127 GLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLTQLTVTDCRSLRAPEKRAAPINI 186
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
+A+ IED EKS+ L R L +F Q + Y +R
Sbjct: 187 DRASPLFPHQPIEDFQQFPAGEKSA---LTR------------LRQFCSQKVGDYQNDRD 231
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREY 292
+ TS LSPYL G LS R+ F L + + + +S F +L + RE+
Sbjct: 232 IPSIDGTSQLSPYLAVGVLSPRQCFNRLQAE-----NPQVLDHPDSGAFTWLNELVWREF 286
Query: 293 SRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
+L FP + +P + ++ W+ +F AW+ G+TGYP+VDA MR+L TGW+H
Sbjct: 287 YSHLLVAFPRLSRHQPFIEWTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMH 346
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R+IV+SF VK LL+ WR G KYF LLD L + GWQ+ + + D R+ +
Sbjct: 347 NRLRMIVASFLVKDLLIDWRKGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFN 406
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLD 471
P QG KFD +G ++R WLPEL ++P ++IH P++ A LNYP+PI+D
Sbjct: 407 PTTQGKKFDAQGAFIRHWLPELQQVPDKYIHTPYEW------AVISNTALNYPEPIVDHK 460
Query: 472 LGR 474
R
Sbjct: 461 QAR 463
>gi|424798652|ref|ZP_18224194.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 696]
gi|423234373|emb|CCK06064.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 696]
Length = 473
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 156/480 (32%), Positives = 237/480 (49%), Gaps = 36/480 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN ALAAA RD V ++ P++ + P + + ++ Q+L L
Sbjct: 5 LVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAA--FIHQNLEAL 62
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAI-----KATKVVFNHLYDPVSLVRDHSIKEK 117
Q+L G + LF E A A + + + +N+ Y+ RD +++ +
Sbjct: 63 QQALAKRG--IALFTREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERR 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME--PASILPPWRLVQ 175
L E ++ Q ++ ++ P + G + F Y L+ E PA + P +
Sbjct: 121 L-EGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPACVSAP--KPR 177
Query: 176 AAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
A GTI + L D + +ALL + G A K L EF + Y + R
Sbjct: 178 AGGTI--TDVPALAPFDYPCEMPDALL---FPAGEEAALKRLREFCQTAAGDYPEKRDFP 232
Query: 236 GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
TSLLSPYL G LS R QCL ++L EG S +L + RE+ R+
Sbjct: 233 AIRGTSLLSPYLAIGVLSPR---QCL--HRLLTEHPRALEGG-SGAVWLNELIWREFYRH 286
Query: 296 LCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
L +P +P + W + +F+AW +G TGYP+VDA MR++ ATGW+HNR+
Sbjct: 287 LIVAWPHLCRHQPFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRL 346
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+I +SF VK LL+ WR G +YF L+D D + GWQ+ + + D R+ +P
Sbjct: 347 RMITASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTT 406
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG +FD EGE++R+W+PEL+ +P + +H P L A L YP+PI+D R
Sbjct: 407 QGQRFDAEGEFIRRWVPELSHIPGKAVHEPH------LWAKKNGKALRYPQPIVDHKQAR 460
>gi|365960525|ref|YP_004942092.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
gi|365737206|gb|AEW86299.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
Length = 428
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 146/475 (30%), Positives = 227/475 (47%), Gaps = 62/475 (13%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
TI W+RRDLR+EDN AL A ++ SV P++ + Q ++ + L Y+ +
Sbjct: 2 TIFWYRRDLRVEDNAALYFALQENQSVLPIFIFDTTILNQLEKTDARVSFIHEQLQYINR 61
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK++ L +F + + E I+ K V NH Y+P + RD +I E L ++
Sbjct: 62 QLKAVNKSLAIFYG-NPVEIFSELITKHKIENVYTNHDYEPAARKRDKAINELLKSHQVA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQMEPASILPPWRLVQAAGTID 181
++ +++E EI + + +Y W + L P P +L+ I
Sbjct: 121 FKTCKDQVIFEKTEILKNNQTPYVVYTSYSKKWKENLNTIQLPY--YPSEKLIHK---II 175
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+ L L+D S K + + P ++ +D ++T + +N L G TS
Sbjct: 176 PHNYPFLSLKDISFKPTTIVF-----PKYNISDALITHYEAT------RNYPSLPG--TS 222
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLS +L FG LS+RK+ + + FE FL + RE+ + ++FP
Sbjct: 223 LLSIHLRFGTLSIRKLVEYV----------RTFENPT----FLNELIWREFFMQILWHFP 268
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
T + + PW + F+ W QG+TGYP VDAGMREL ATG +HNR+R+IV+SF
Sbjct: 269 HTVHKSFKDKYDHIPWENNELFFQKWCQGQTGYPFVDAGMRELNATGHMHNRVRMIVASF 328
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K LL+ WRWG YF LLD + ++ WQ+ +GS D R+ +P Q KFDP
Sbjct: 329 LCKHLLIDWRWGEAYFATKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDP 388
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+Y+++W+PEL + P YPKP++D + RER
Sbjct: 389 NLQYIKKWIPEL------------ETP-------------QYPKPMVDHKIARER 418
>gi|387606186|ref|YP_006095042.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
Length = 472
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 239/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLNGLRI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E I + A T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP + W + +FKAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++R+WLPEL +P + +H PW + AGV L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRRWLPELRDVPGKAVHEPW----KWAQKAGVT--LDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 232/496 (46%), Gaps = 42/496 (8%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSL 59
G+R + W RRDLR+ DN LAAA AR V V+ P P RV+ +L L
Sbjct: 2 GDRILFWHRRDLRLHDNLGLAAARARSPQVTGVFCLDPGILHRDDVAPVRVA--YLMNCL 59
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ L + G EL++ + S L I T + +N +P + RD +
Sbjct: 60 AALQGRYAAAGGELLILQG-SPAQVLPNLAQVIAVTALYWNRDVEPYARDRDTHVAAACK 118
Query: 120 ELGISVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDK-CLQMQMEPA-------SILPP 170
E GI +++ D LL P + G +T + +W C Q + P + P
Sbjct: 119 EQGIEIKTTFWDQLLCAPGAVLTGTGSPYTVYGPFWRNWCTQAKAPPELEPTNFEGLSPA 178
Query: 171 WR-LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV--EQHLLR 227
R AAG + S DLG + PG A + L F +Q +
Sbjct: 179 ERERANAAGAMPLPSTTDLGFSWDQPLPVE--------PGEGAALQQLEAFCSQDQAIGA 230
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y + R TS LS L FG + +R V+ + + E ++SVT + + +
Sbjct: 231 YDEQRNFPFALGTSRLSAALKFGVIGIRTVWAAAAEAM---ERCRSDETRQSVTTWQQEL 287
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ +++ + FP P + FPW D F+AW GRTGYP+VDA MR+L T
Sbjct: 288 AWREFYQHVMYFFPQLATGPYRPQWQNFPWVNDEAQFQAWCAGRTGYPIVDAAMRQLNET 347
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR R+IV+SF K L++ WRWG KYF TL+D DL + GWQ+ + S D L
Sbjct: 348 GWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQTLVDGDLSANNGGWQWSASSGMDPKPL- 406
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFDPE EY+RQWLPE+ + T + +P + + YP PI
Sbjct: 407 RIFNPASQAKKFDPEAEYIRQWLPEIRHLDTGELVSGVLSPLSRQQT-------GYPAPI 459
Query: 468 IDLDLGRERLTQAIFK 483
+D + QA+FK
Sbjct: 460 VD-----HKRQQALFK 470
>gi|429084580|ref|ZP_19147582.1| Deoxyribodipyrimidine photolyase [Cronobacter condimenti 1330]
gi|426546419|emb|CCJ73623.1| Deoxyribodipyrimidine photolyase [Cronobacter condimenti 1330]
Length = 473
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 241/481 (50%), Gaps = 38/481 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYL 62
+VWFR DLR+ DN ALAAA RD V ++ P++ + P + + W Q+L L
Sbjct: 5 LVWFRADLRVNDNLALAAACRDPDARVIGLFISTPQQWRDHSVAPRQAAFIW--QNLQAL 62
Query: 63 GQSLKSLGAELVLFKTEST-LAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEK 117
Q+L G + LF E+T A + + A + T + +N+ Y+ ++ R ++ E+
Sbjct: 63 QQALAKRG--IPLFMREATDFTAAVGTLDAFCTEQQVTSLFYNYQYE-LNEARRDALAER 119
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+E ++ Q ++ ++ P + G + F Y L+ E LPP V A
Sbjct: 120 QLEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEG---LPP--CVSAP 174
Query: 178 GTIDGCSIEDLGLE---DESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
G ++ ++ D ++ +A+L + G A K L +F + Y + R
Sbjct: 175 KPRAGGALSEVAALPPFDYPSETPDAML---FPAGEEAALKRLRDFCQTAAGDYPEKRDF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
TSLLSPYL G LS R QCL ++L EG S +L + RE+ R
Sbjct: 232 PAIRGTSLLSPYLAIGVLSPR---QCL--HRLLTEHPRAAEGG-SGAVWLNELIWREFYR 285
Query: 295 YLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+L +P +P + W + +F+AW +G TGYP+VDA MR++ TGW+HNR
Sbjct: 286 HLIVAWPHLCRHQPFIDWTARVAWQRNDAHFQAWCEGNTGYPIVDAAMRQMKVTGWMHNR 345
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+I +SF VK LL+ WR G +YF L+D D + GWQ+ + + D R+ +P
Sbjct: 346 LRMITASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPT 405
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FD +G+++R+W+PEL+ +P + +H P D K G L YPKPI+D
Sbjct: 406 TQGQRFDADGDFIRRWVPELSHIPGKAVHEPHD----WAKKQGA--ALRYPKPIVDHKQA 459
Query: 474 R 474
R
Sbjct: 460 R 460
>gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 476
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 142/480 (29%), Positives = 238/480 (49%), Gaps = 33/480 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR+EDN AL A + G V VY PK + + + + L L
Sbjct: 2 NVVWFRRDLRVEDNTALIEACQSGEPVVGVYFATPKTWERHSLSAIQADLIYRRLFALQD 61
Query: 65 SLKSLGAELVLFKTES---TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L+ L L + +S + + + +++ A+ + FN Y+ + RD +I + L E
Sbjct: 62 DLRKLNIPLYYAEVDSYKDCVELIADVMTSSSASGLFFNKQYEFDEVQRDSAIVQLLKES 121
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
+ ++ P + +++G F F + LQ M++ P +++ + T+
Sbjct: 122 NVDCSAHEDKCFLPPGSVLNKQGGYFKVFTPFKRAYLQQMEVTPLNVIKAKKQSNTLPTL 181
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
D + +S S + + + + L EF E+ + Y +NR ++T
Sbjct: 182 DNTRLRLFS--QDSPFSYPRVSSNNYKVETTEVIQALREFEEKKVKLYAENRDYPSVDAT 239
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S+LSPYL G LS+R QC M ++++ ++ G V + + RE+ ++L +
Sbjct: 240 SILSPYLAVGILSIR---QC--MARVMYQQQLPLSGGREV--WQSELIWREFYQHLAY-- 290
Query: 301 PFTHERPLLSNLKYFPWHADLG------NFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
E L + PW L +AW+ G+TGYP+VDA M++L TGW+HNR+
Sbjct: 291 ---FEPKLSKGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRL 347
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF +K L + WR G +YF L+D D + GWQ+ S + DG R+ +P
Sbjct: 348 RMIVASFLIKDLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPIT 407
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
QG +FDP+G ++ +WLP+LA +P +++H PW +A+ L YP PI+D + R
Sbjct: 408 QGERFDPDGRFIIRWLPQLAEVPKKFLHQPWKWS----RAS----QLKYPAPIVDHKVQR 459
>gi|421789719|ref|ZP_16225967.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
gi|410397859|gb|EKP50098.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-82]
Length = 480
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 147/487 (30%), Positives = 243/487 (49%), Gaps = 30/487 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQA 176
L G + ++ ++ I ++ + F A+ C ++ S P Q
Sbjct: 121 LNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQN 180
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRG----WSPGWSNADKVLTEFVEQHLLRYYKNR 232
+D +++ L DE EK + L + W G A + L +F+E+ + Y R
Sbjct: 181 EVPLDFLQGKNIDL-DEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVER 239
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRAMG 288
+TS LSPYL+ G LS+R+ Q L+ Q NF EG+++ +L +
Sbjct: 240 DFPHIQATSKLSPYLNMGILSIRQCLQALFRNQ-----HGNFHLVTEGQQT---WLDELL 291
Query: 289 LREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ +++ F+FP + P + + W+ + + AW+ G+TG P+VDAGMR+L T
Sbjct: 292 WREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQT 351
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 352 GWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYF 411
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPKPI
Sbjct: 412 RIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPY--------SSKTDLGLNYPKPI 463
Query: 468 IDLDLGR 474
+DL R
Sbjct: 464 VDLKETR 470
>gi|425298869|ref|ZP_18688918.1| DNA photolyase [Escherichia coli 07798]
gi|408221285|gb|EKI45239.1| DNA photolyase [Escherichia coli 07798]
Length = 472
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 236/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEQGIPL-LFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 217/481 (45%), Gaps = 22/481 (4%)
Query: 6 TIVWFRRDLRIEDN-PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
I W RRDLR+ DN AA R + P + P+ Y G + +L L L
Sbjct: 4 AIWWIRRDLRLTDNQALTAALTRAAQIVPCFVLDPRLLNSSYAGERRKAFLFSGLRVLDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
L+ G L++ + A L + A V Y P + RD ++ L I
Sbjct: 64 DLRRRGGRLIV-RCGDPAAVLSRLAAESGACAVYAERDYSPYARCRDEAVARAL---PIP 119
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPA-SILP-PWRLVQAAGTIDG 182
+ +G + P + + G +T F Y + A ILP P RL +
Sbjct: 120 LVLTDGLTIRRPDALLKDDGTPYTVFTPYSRRWRSYPPVGAHEILPAPARLAVPESIVGE 179
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV---EQHLLRYYKNRQKLGGNS 239
+ L+D++ + G + A L F E + Y + R +S
Sbjct: 180 PIPKQPHLDDDTGPFPS---------GEAEAQARLRRFTTGDEAPIYAYAQARDFPDLDS 230
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSPYL FG LS R Q N E + +L + R++ + ++
Sbjct: 231 TSKLSPYLRFGMLSAR---QAALAAYQAMDAAANAEQRTGAETWLTELIWRDFYYSILYH 287
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
FP W + +F AW G TGYP +DA MR+L ATGW+HNR R+ V+
Sbjct: 288 FPHVARGCFQRAYDAIIWENNPTHFAAWCAGLTGYPFIDAAMRQLAATGWMHNRARMAVA 347
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WRWG K+F LLD DL + GWQ+ +G D R+ +P QG KF
Sbjct: 348 SFLVKDLLIDWRWGEKWFMQRLLDGDLAANNGGWQWSAGVGTDAAPYFRIFNPTAQGQKF 407
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP G Y+R+W+PEL +P +IH PW P + AG +G NYP PI+D + R+R+ +
Sbjct: 408 DPRGVYIRRWVPELRLVPDRYIHEPWRMPRSEQMRAGCIIGQNYPAPIVDHAVARQRVLE 467
Query: 480 A 480
A
Sbjct: 468 A 468
>gi|386015078|ref|YP_005933356.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
Length = 475
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 229/483 (47%), Gaps = 27/483 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI DN AL AA D V ++ P + Q ++ QSL L
Sbjct: 5 LVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLDMLQS 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL G L + + A+ L+ + K+ +N+ Y+ RD S +++L E
Sbjct: 65 SLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKRLHEA 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
+ Q ++ LL P I G + F + L+ +Q +P + + A
Sbjct: 125 NVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREGAPLK 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ S+ +S + PG A K L EF +Q +L Y K R +ST
Sbjct: 185 EPKSLPPFDYPKADIDTS------LFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDST 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
S LS YL G LS R QCL +IL + + E + + + + RE+ R+L
Sbjct: 239 SRLSVYLSTGVLSPR---QCL--HRILHEQPKALESSPAAVW-INELIWREFYRHLIVAH 292
Query: 301 P-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
P +P + + W + +F AW+ G+TGYP+VDA MR++ GW+HNR+R+I +
Sbjct: 293 PRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITA 352
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +F
Sbjct: 353 SFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 412
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWD-APPNVLKAAGVELGLNYPKPIIDLDLGRERLT 478
D EGE++R++LPEL +P IH P A N K L+YP PI++ R++
Sbjct: 413 DKEGEFIRRYLPELKEVPDSDIHQPHQWAQKNNKK-------LDYPAPIVEHKDARKKTL 465
Query: 479 QAI 481
A
Sbjct: 466 DAF 468
>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM10+]
gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
str. 91001]
gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|384122926|ref|YP_005505546.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|384126809|ref|YP_005509423.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|384139466|ref|YP_005522168.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|384415591|ref|YP_005624953.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420553020|ref|ZP_15050328.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|420558580|ref|ZP_15055192.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|420564034|ref|ZP_15060048.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|420569077|ref|ZP_15064628.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|420574726|ref|ZP_15069742.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|420580056|ref|ZP_15074582.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|420585384|ref|ZP_15079413.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|420590518|ref|ZP_15084031.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|420595913|ref|ZP_15088884.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|420601535|ref|ZP_15093889.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|420606977|ref|ZP_15098798.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|420612394|ref|ZP_15103667.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|420617756|ref|ZP_15108361.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|420623037|ref|ZP_15113090.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|420628142|ref|ZP_15117725.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|420633265|ref|ZP_15122327.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|420638464|ref|ZP_15126998.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|420643927|ref|ZP_15131964.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|420649220|ref|ZP_15136767.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|420654878|ref|ZP_15141852.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|420660347|ref|ZP_15146762.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|420665638|ref|ZP_15151502.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|420670533|ref|ZP_15155959.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|420675883|ref|ZP_15160827.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|420681492|ref|ZP_15165902.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|420686803|ref|ZP_15170634.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|420697804|ref|ZP_15180306.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|420703521|ref|ZP_15184921.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|420708992|ref|ZP_15189669.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|420714448|ref|ZP_15194540.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|420719947|ref|ZP_15199279.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|420725437|ref|ZP_15204083.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|420731042|ref|ZP_15209109.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|420736060|ref|ZP_15213644.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|420741538|ref|ZP_15218567.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|420747183|ref|ZP_15223377.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|420752691|ref|ZP_15228251.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|420758346|ref|ZP_15232871.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|420763706|ref|ZP_15237496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|420768947|ref|ZP_15242208.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|420773944|ref|ZP_15246722.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|420779527|ref|ZP_15251652.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|420785120|ref|ZP_15256548.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|420790313|ref|ZP_15261192.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|420795823|ref|ZP_15266149.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|420800878|ref|ZP_15270687.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|420806252|ref|ZP_15275550.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|420811580|ref|ZP_15280347.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|420817125|ref|ZP_15285344.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|420827514|ref|ZP_15294673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|420833231|ref|ZP_15299841.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|420838075|ref|ZP_15304220.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|420843257|ref|ZP_15308919.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|420848911|ref|ZP_15314004.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|420854494|ref|ZP_15318773.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|420859777|ref|ZP_15323386.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|421764191|ref|ZP_16200983.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
pestis KIM10+]
gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Microtus str. 91001]
gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854595|gb|AEL73148.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|391425862|gb|EIQ88096.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|391426528|gb|EIQ88704.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|391439765|gb|EIR00390.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|391441270|gb|EIR01775.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|391444732|gb|EIR04924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|391456609|gb|EIR15620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|391457600|gb|EIR16526.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|391459970|gb|EIR18708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|391472759|gb|EIR30190.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|391474551|gb|EIR31831.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|391475170|gb|EIR32394.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|391488956|gb|EIR44747.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|391490139|gb|EIR45813.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|391491571|gb|EIR47119.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|391504403|gb|EIR58496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|391505077|gb|EIR59114.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|391509951|gb|EIR63528.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|391520393|gb|EIR72946.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|391522601|gb|EIR74982.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|391523660|gb|EIR75952.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|391535615|gb|EIR86673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|391538245|gb|EIR89065.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|391540465|gb|EIR91089.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|391553518|gb|EIS02837.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|391553991|gb|EIS03271.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|391554886|gb|EIS04092.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|391569662|gb|EIS17221.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|391575381|gb|EIS22105.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|391582438|gb|EIS28195.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|391585186|gb|EIS30620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|391595896|gb|EIS39892.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|391598485|gb|EIS42198.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|391599985|gb|EIS43553.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|391612885|gb|EIS54907.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|391613474|gb|EIS55439.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|391617393|gb|EIS58941.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|391625715|gb|EIS66174.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|391632048|gb|EIS71614.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|391636532|gb|EIS75549.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|391638938|gb|EIS77685.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|391648656|gb|EIS86143.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|391652615|gb|EIS89658.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|391657171|gb|EIS93708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|391661578|gb|EIS97608.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|391669556|gb|EIT04679.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|391678828|gb|EIT13013.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|391679816|gb|EIT13915.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|391680593|gb|EIT14621.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|391692750|gb|EIT25559.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|391697437|gb|EIT29832.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|391708633|gb|EIT39878.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|391713085|gb|EIT43895.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|391713730|gb|EIT44474.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|391725197|gb|EIT54686.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|391726962|gb|EIT56244.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|391729089|gb|EIT58115.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|411175505|gb|EKS45531.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
Length = 487
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 230/476 (48%), Gaps = 27/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL AA +D SV V+ P + +L+Q+L +L
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L + G L + + A+ L++ + + ++ Y+ +RD ++ +L E
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I+ QS++ +L P + + F + +Q + M +P + A +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L D ++S ++ L + G A + L F + + Y + R T
Sbjct: 185 ----LSPLPF-DYPQQSVDSQL---FPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGT 236
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G LS R+ F LW + E E +S F +L + RE+ R+L
Sbjct: 237 SCLSPYLVLGVLSPRQCFNRLWAE-----SPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ KAW+QG+TGYP+VDA MR++ TGW+HNR+R+I
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD +G ++R+WLPELA +P IH PW A + L+YP P++D R
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWR------WAERQQQHLDYPVPLVDHKQAR 461
>gi|355652212|ref|ZP_09056647.1| hypothetical protein HMPREF1030_05733 [Pseudomonas sp. 2_1_26]
gi|354824420|gb|EHF08671.1| hypothetical protein HMPREF1030_05733 [Pseudomonas sp. 2_1_26]
Length = 476
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 227/492 (46%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 59
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 60 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLRE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 120 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQAPPGV 167
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L +F +QHL Y++
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 227
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 228 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 282
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 283 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 342
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 343 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 402
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 403 FNPLSQSERFDPRGEFIRYWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 454
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 455 LKASRERALAAF 466
>gi|449016513|dbj|BAM79915.1| probable DNA photolyase [Cyanidioschyzon merolae strain 10D]
Length = 725
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 173/568 (30%), Positives = 257/568 (45%), Gaps = 70/568 (12%)
Query: 6 TIVWFRR--DLRIEDNPALAAAAR-DGSVFPVYTWCPKEEGQFYP-GRVSRWWLKQSLSY 61
TIVW R DLRI DNP L A R + +F ++TW + + Y G R +L ++
Sbjct: 108 TIVWLRGRGDLRIHDNPLLLQAQRLNEPLFIMFTWSSADADKNYGFGEAQRVFLFSAVDA 167
Query: 62 LGQSLKSLGAELVLFKTESTLAALLECI-------SAIKATKVVFNHLYDPVSLVRDHSI 114
L ++L +++ + S A L E + +++ A ++ Y+P L D +
Sbjct: 168 LNRALNMRFQQVIHYVRLSDDAGLEEYLQLFHFLEASLSARTLLMARRYEPPLLQLDMEL 227
Query: 115 KEKLV-ELGISVQSYNGDLLYEPWEI-YD-----ERGHAFTT--FDAYWDKCLQMQMEPA 165
+ L + V ++N LL+EPW + YD GH T F W + + EPA
Sbjct: 228 ECTLTKQRKWKVYTHNMHLLHEPWTVAYDGDATSSAGHFGTLLPFWQAWQRNADLPPEPA 287
Query: 166 ---SILPPW---------------------------RLVQAAGTIDGCSIEDLGLEDE-- 193
S LPP R + A S+ + GL
Sbjct: 288 AAPSTLPPAAALERCEPRTPACCEKPPPLAGDAFVDRTTRCAPFQFVTSLVETGLHPVRP 347
Query: 194 -SEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGEL 252
+++ LLG W+ L +F+E L Y KN+ + S LSPYL G L
Sbjct: 348 GTKRWDTVLLG-SWAVDEERVRAFLRDFLEHRLPLYEKNKSRADLEVVSRLSPYLALGML 406
Query: 253 SVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNL 312
S R+VF A + F R + R+ + + + FP P+ S+
Sbjct: 407 SAREVFHATR------AASRRLAASKRSKTFERRLIWRDLAYWTLYMFPEAVTTPIRSHY 460
Query: 313 KYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRW 372
W+ D AW++G TGYP++DAGMR+LW TGW+ IR+ +SF V+ L + W
Sbjct: 461 ASQEWNEDPRLLAAWQRGSTGYPIIDAGMRQLWQTGWMPQNIRMAAASFLVEYLNIHWIH 520
Query: 373 GMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPE 432
G+++F TL+D D+ + + WQ + D + PE DP G YVR+WLPE
Sbjct: 521 GLQWFHRTLIDLDIAINAMMWQNAGRTGLDMWNF--VIHPETSARSSDPTGAYVRKWLPE 578
Query: 433 LARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADN 492
LA++P +IH PW AP +VL +AGV+LG YP+ II DLG R Q+ + EM +
Sbjct: 579 LAQLPNAYIHAPWKAPESVLSSAGVQLGATYPQRII-ADLGAAR-KQSQAAVLEMRSRSM 636
Query: 493 AMDSNGTNEVVFDNSDRIQTPAIPQVVL 520
N D DRI+ P + V L
Sbjct: 637 PQFFNA------DGYDRIRVPVLKAVSL 658
>gi|432405530|ref|ZP_19648252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
gi|430932447|gb|ELC52870.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
Length = 470
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 236/484 (48%), Gaps = 36/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + + T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G ID L +S +++ + A L +F + Y + R
Sbjct: 179 GAIDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLSELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPA--VHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 458
Query: 477 LTQA 480
A
Sbjct: 459 TLAA 462
>gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
gi|419699576|ref|ZP_14227191.1| deoxyribodipyrimidine photolyase [Escherichia coli SCI-07]
gi|419911562|ref|ZP_14430034.1| deoxyribodipyrimidine photolyase [Escherichia coli KD1]
gi|422382541|ref|ZP_16462701.1| FAD binding domain of DNA photolyase, partial [Escherichia coli MS
57-2]
gi|432380341|ref|ZP_19623298.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE15]
gi|432386111|ref|ZP_19629009.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE16]
gi|432430765|ref|ZP_19673210.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE187]
gi|432440036|ref|ZP_19682391.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE189]
gi|432445149|ref|ZP_19687457.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE191]
gi|432464677|ref|ZP_19706785.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE205]
gi|432512912|ref|ZP_19750148.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE224]
gi|432582775|ref|ZP_19819185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE57]
gi|432610388|ref|ZP_19846560.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE72]
gi|432645146|ref|ZP_19880946.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE86]
gi|432654944|ref|ZP_19890657.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE93]
gi|432698024|ref|ZP_19933191.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE169]
gi|432731380|ref|ZP_19966218.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE45]
gi|432744644|ref|ZP_19979344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE43]
gi|432758459|ref|ZP_19992962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE46]
gi|432800938|ref|ZP_20034925.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE84]
gi|432842936|ref|ZP_20076357.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE141]
gi|432903049|ref|ZP_20112666.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE194]
gi|432942664|ref|ZP_20139923.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE183]
gi|432970830|ref|ZP_20159708.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE207]
gi|432984346|ref|ZP_20173084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE215]
gi|433012889|ref|ZP_20201267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE104]
gi|433022514|ref|ZP_20210529.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE106]
gi|433037650|ref|ZP_20225266.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE113]
gi|433071764|ref|ZP_20258460.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE129]
gi|433081600|ref|ZP_20268074.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE133]
gi|433100226|ref|ZP_20286336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE145]
gi|433119266|ref|ZP_20304974.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE157]
gi|433143294|ref|ZP_20328461.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE168]
gi|433182252|ref|ZP_20366549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE85]
gi|433187502|ref|ZP_20371621.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE88]
gi|433206833|ref|ZP_20390531.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE97]
gi|433323395|ref|ZP_20400744.1| deoxyribodipyrimidine photolyase [Escherichia coli J96]
gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2]
gi|380349280|gb|EIA37553.1| deoxyribodipyrimidine photolyase [Escherichia coli SCI-07]
gi|388393275|gb|EIL54660.1| deoxyribodipyrimidine photolyase [Escherichia coli KD1]
gi|430909617|gb|ELC30983.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE16]
gi|430911450|gb|ELC32736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE15]
gi|430956387|gb|ELC75063.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE187]
gi|430969268|gb|ELC86418.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE189]
gi|430975871|gb|ELC92755.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE191]
gi|430997428|gb|ELD13695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE205]
gi|431044470|gb|ELD54743.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE224]
gi|431119791|gb|ELE22790.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE57]
gi|431151206|gb|ELE52241.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE72]
gi|431183924|gb|ELE83697.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE86]
gi|431194338|gb|ELE93603.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE93]
gi|431246512|gb|ELF40776.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE169]
gi|431278288|gb|ELF69282.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE45]
gi|431294926|gb|ELF85103.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE43]
gi|431311423|gb|ELF99586.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE46]
gi|431350896|gb|ELG37699.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE84]
gi|431397464|gb|ELG80920.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE141]
gi|431436579|gb|ELH18094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE194]
gi|431453716|gb|ELH34100.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE183]
gi|431485967|gb|ELH65624.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE207]
gi|431506089|gb|ELH84693.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE215]
gi|431535160|gb|ELI11543.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE104]
gi|431540033|gb|ELI15665.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE106]
gi|431554966|gb|ELI28830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE113]
gi|431592855|gb|ELI63424.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE129]
gi|431605435|gb|ELI74824.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE133]
gi|431622349|gb|ELI91130.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE145]
gi|431648491|gb|ELJ15887.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE157]
gi|431665690|gb|ELJ32404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE168]
gi|431708936|gb|ELJ73438.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE88]
gi|431711340|gb|ELJ75693.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE85]
gi|431732643|gb|ELJ96094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE97]
gi|432348098|gb|ELL42550.1| deoxyribodipyrimidine photolyase [Escherichia coli J96]
Length = 472
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 236/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|425070683|ref|ZP_18473789.1| hypothetical protein HMPREF1310_00074 [Proteus mirabilis WGLW4]
gi|404600130|gb|EKB00579.1| hypothetical protein HMPREF1310_00074 [Proteus mirabilis WGLW4]
Length = 476
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 228/485 (47%), Gaps = 46/485 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL A ++ V ++T P + + + ++ +L L
Sbjct: 8 LVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNLSH 67
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
SL L L L +++ A +++ + T + FNH Y RD + E L
Sbjct: 68 SLAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLAH- 126
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM-EPASILPPWRLVQAAGTI 180
+V Y+ ++ P + ++G + F + L++ + + + LP + T+
Sbjct: 127 NTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQKTV 186
Query: 181 DGCSIEDLGLEDESEK----SSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
S L S K S A L R L +F + ++ Y K R
Sbjct: 187 SPLSAPLFALPISSTKMFPASEQAALQR------------LKQFCYERVIHYAKWRDIPA 234
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRY 295
+ TS LSPYL G +SVR+ F L+ + + E S F + + RE+ ++
Sbjct: 235 IDGTSQLSPYLAIGLVSVRQCFNRLYQTE-----PDFLENNHSSAFVWFNELVWREFYQH 289
Query: 296 LCFNFPFTHER----PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIH 351
L P ++ P N++ W D F AW QG TG+P++DA MR+L TGW+H
Sbjct: 290 LIVANPSLSKQIAFQPWTENIR---WRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMH 346
Query: 352 NRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDS 411
NR+R++ +SF VK LL+ WRWG YF L+D D + GWQ+ + + D R+ +
Sbjct: 347 NRLRMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFN 406
Query: 412 PEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELG--LNYPKPIID 469
P QG KFDP+GE++R WLPELA +P IH P ++ G L+YP+PI+D
Sbjct: 407 PTTQGRKFDPDGEFIRHWLPELADVPDRDIHTP--------SEWAIKTGHYLDYPQPIVD 458
Query: 470 LDLGR 474
R
Sbjct: 459 HAKAR 463
>gi|392421255|ref|YP_006457859.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri CCUG 29243]
gi|390983443|gb|AFM33436.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri CCUG 29243]
Length = 476
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/493 (30%), Positives = 235/493 (47%), Gaps = 30/493 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFY-----PGRVSRWWLKQSLSY 61
++W R DLR DN ALAAA G +Y P GQ+ P +V+ +WL+ +L+
Sbjct: 4 LLWLRSDLRTSDNTALAAAMACGPTVALYLVTP---GQWLAHDDAPCKVN-FWLR-NLAE 58
Query: 62 LGQSLKSLGAELVLFKTESTLA---ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L L +L L++ + + A ALL+ ++ +N Y RD ++ L
Sbjct: 59 LSTRLGALNVPLLIREVDDWQAVPDALLKVCREQGVQRLHYNDEYGVNEQRRDRAVTTHL 118
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
GISV+ Y LL+ P + + G F F + CL + LP V AA
Sbjct: 119 EAAGISVRGYLDQLLFTPGSVRTQSGSYFKVFSQFRKACL---AHLSVSLPACEPVPAAQ 175
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
G + + + L W G + A + L FVE L Y++ R
Sbjct: 176 APLGITSDPIPTTVTGFPRPTDYLRALWPAGEAFAQRRLAAFVEDDLNEYHQRRDLPAEP 235
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LS YL G +S+R QCL + + + E G VT ++ + RE+ +++
Sbjct: 236 GTSQLSAYLAAGVISIR---QCL-HAALGYNQGELDSGSTGVTTWINELLWREFYKHILV 291
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+P + R + PW +AW+QGRTG+P++DA MR++ TGW+HNR+R++
Sbjct: 292 GYPRVSMYRAFRPETEALPWRRAPYELEAWQQGRTGFPIIDAAMRQMQETGWMHNRLRMV 351
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL +P Q
Sbjct: 352 VAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQ 411
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLN-YPKPIIDLDLGRER 476
+FDP+G+++R+WLPEL + +H+P A G+ YP PI+DL R R
Sbjct: 412 RFDPDGQFLRRWLPELQHLSRRDVHNP--------SAHRSLFGVTEYPAPIVDLGASRAR 463
Query: 477 LTQAIFKMWEMEA 489
A + + +A
Sbjct: 464 ALDAFRNLQDAQA 476
>gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
gi|339490544|ref|YP_004705049.1| hypothetical protein LGMK_01830 [Leuconostoc sp. C2]
gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
gi|338852216|gb|AEJ30426.1| hypothetical protein LGMK_01830 [Leuconostoc sp. C2]
Length = 478
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 236/494 (47%), Gaps = 29/494 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+++WFRRDLR+ DN ALA A D +F + + E Q V++ S+ L
Sbjct: 5 SVMWFRRDLRVSDNIALAHAVENSDKILFVFHIDTQQLEKQ---PTVNQSSFFASVQQLK 61
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKAT-----KVVFNHLYDPVSLVRDHSIKEKL 118
+SLK L +F E L + + IK + FN RD I +
Sbjct: 62 KSLKKQNINLYVFYGE-----LKDMFNHIKKQLPHWRDLYFNRDEHGYGGERDQVITKYC 116
Query: 119 VE-LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
E L ISV + L+ +I GH + F Y+ + + + + + Q
Sbjct: 117 QEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSNPITIDLTNISQEH 176
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
T+ + + EK S A + + G A K+L++F+E L +Y +NR
Sbjct: 177 LTVSTLEQDSMLDALIDEKHSYAYVDQ---IGEDKARKILSDFIENKLTQYDQNRDVPSL 233
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
++TS LS YL GE+S+R V++ + + + +G+ + F++ + R+Y +
Sbjct: 234 DATSHLSRYLRTGEISIRVVYEGI-------KQAPDSDGRST---FIKELCWRDYYNMIY 283
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
P +E + + W D F W+ G TG+P+VDA MR+L TGW+HNR+R+I
Sbjct: 284 ATHPQQNESAIRPEFRQIRWRDDKIGFDDWQTGHTGFPIVDAAMRQLNETGWMHNRLRMI 343
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+SF K LL+ W+WG YF L+D D +I GWQ+ + + D R+ +P +Q
Sbjct: 344 VASFLTKDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTDSVPYFRIFNPTLQSK 403
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFDP+G ++++++PEL R+P IH P K + +G +YPKPI++ R
Sbjct: 404 KFDPQGLFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHDYPKPIVNHKTARINA 463
Query: 478 TQAIFKMWEMEAAD 491
A K M + D
Sbjct: 464 IAAYEKSKTMNSVD 477
>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
Length = 477
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/498 (28%), Positives = 236/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA A S KE+ R ++ L++ +
Sbjct: 11 SVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAF-RKL 69
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 70 LKCESIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 128
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 129 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 188
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 189 LRTVESFKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 229
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 230 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 279
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 280 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P + ++ +G +YP+PI+D
Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 459
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 460 RE---QAIAKYEWAKEKA 474
>gi|376292230|ref|YP_005163904.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC02]
gi|372109553|gb|AEX75613.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC02]
Length = 446
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 211/454 (46%), Gaps = 49/454 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPWR 172
+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAKQP-- 179
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
T +I DLG + S + + W+PG A + L E ++ L RY +R
Sbjct: 180 ---IDDTETQAAIADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLDDR 231
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ + TS LSP L FGELSV +V W EG F R + R++
Sbjct: 232 DRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDF 275
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWATG 348
+ + P + FPW D G+F+A WR GRTG LVDAGMRELWATG
Sbjct: 276 AWHRLDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWATG 333
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
+HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D R
Sbjct: 334 TMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFR 393
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPEL-ARMPTEWI 441
+ +P+ Q +FDP+G Y +WLP + A P E I
Sbjct: 394 IFNPDTQARRFDPDGTYRTRWLPIMSADYPEEAI 427
>gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 477
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 208/445 (46%), Gaps = 36/445 (8%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWL 55
M ++WFR DLR+ DN AL+ AA D + V P G G + WW
Sbjct: 41 MTAMTCLMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATTWWR 100
Query: 56 KQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIK 115
++SL L L G EL+ ++ + + + AT V + Y D ++K
Sbjct: 101 ERSLYALAHDLADHGVELIRAAGDAR-EEIPRLAAELGATTVTWTRRYHGPLREVDATVK 159
Query: 116 EKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM---EPASILPPWR 172
E L G + S G L EPWE+ + +G + F + K Q+ EP +
Sbjct: 160 ETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPF-SKAAASQVAGDEPEGV----- 213
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
+ + +E + A L W+PG + A + L + L Y + R
Sbjct: 214 -----PEMGASASSASAWPKPTEPAWAASLAEHWTPGEAGARERLAQL---DLANYAEER 265
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
N+TSLLSP+L FGE+S R+V W + F + + R++
Sbjct: 266 DIPALNATSLLSPHLRFGEVSPREV----WFAAAEEPEAAKFHSE---------LLWRDF 312
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+ + ++ P + F W D K W+ G TG PLVDAGMRELWATG++HN
Sbjct: 313 AWHRLYHLPNLATENVREKFDRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHN 372
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R++V SF K L + WR G ++FWDTL+DAD + WQ+++G D R+ +P
Sbjct: 373 RVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNP 432
Query: 413 EIQGSKFDPEGEYVRQWLPELARMP 437
E Q +FDP+GEYVR+W P L+ P
Sbjct: 433 ETQAKRFDPDGEYVRRWAPALSAPP 457
>gi|397656763|ref|YP_006497465.1| Deoxyribodipyrimidine photolyase [Klebsiella oxytoca E718]
gi|394345309|gb|AFN31430.1| Deoxyribodipyrimidine photolyase [Klebsiella oxytoca E718]
Length = 482
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 232/477 (48%), Gaps = 32/477 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLRI DN ALAAA RD V ++ P + Q ++ L L
Sbjct: 5 LVWFRADLRIHDNLALAAACRDPHAEVLGLFIATPGQWRQHGMAPRQAAFMVSHLHSLQA 64
Query: 65 SLKSLGAELVLFKTE---STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L G L + +++A L + T + +N+ Y+ RD ++++ L E
Sbjct: 65 ALAEKGIPLQIAHAADFTASVALLASICRQRQVTHLFYNYQYEINERQRDAAVEKTLAE- 123
Query: 122 GISVQSYNGDLLYEPWEIYD---ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
++ Q ++ +L P + E FT F + + LQ + P + P V+A G
Sbjct: 124 -VTCQGFDDSVLLPPGSVLTGSREMYKVFTPFKNAFIRRLQKAL-PECVAAP--KVRAGG 179
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
I S E + + ++ +A L F +Q Y + R+
Sbjct: 180 PIAAAS------EVKIDYPQTPFDSELFAADEKSAIARLRGFCQQKAADYEQQRELPAIE 233
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCF 298
TS LSP L G LS R+ L ++Q +G E+ + +L + RE+ R+L
Sbjct: 234 GTSRLSPCLAVGALSPRQCLHRLRVEQ-----PRALDG-EAGSVWLNELIWREFYRHLMV 287
Query: 299 NFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+P RP + W D +AW++G+TG+P+VDA MR+L ATGW+HNR+R+I
Sbjct: 288 YYPNLCKGRPFIDWTDNVAWLDDKSALQAWQRGQTGFPIVDAAMRQLNATGWMHNRLRMI 347
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+SF VK L + WR G +YF + L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 348 VASFLVKDLRIDWRLGERYFIEQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 407
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
+FD G+++RQWLPELA +P + +H PW L A + L+YP+PI+D R
Sbjct: 408 RFDKAGQFIRQWLPELAGVPEKAVHQPW------LWAEKQGVTLDYPRPIVDHKQAR 458
>gi|421806773|ref|ZP_16242635.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
gi|410417316|gb|EKP69086.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
OIFC035]
Length = 480
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 242/489 (49%), Gaps = 34/489 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELSALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILPPWRLV 174
L G + ++ ++ I ++ + F A+ C L P P +
Sbjct: 121 LNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK-- 178
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRG----WSPGWSNADKVLTEFVEQHLLRYYK 230
Q +D +++ L DE EK + L + W G A + L +F+E+ + Y
Sbjct: 179 QNEVPLDFLQGKNIDL-DEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYNV 237
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRA 286
R TS LSPYL+ G LSVR+ Q L+ Q NF EG+++ +L
Sbjct: 238 ERDSPHIQGTSKLSPYLNIGILSVRQCLQALFRNQ-----HGNFHLVNEGQQT---WLDE 289
Query: 287 MGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P + + W+ + + AW+ G+TG P+VDAGMR+L
Sbjct: 290 LLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLL 349
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 350 QTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVP 409
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPK
Sbjct: 410 YFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGLNYPK 461
Query: 466 PIIDLDLGR 474
PI+DL R
Sbjct: 462 PIVDLKETR 470
>gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88]
gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
gi|386598434|ref|YP_006099940.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
gi|386605390|ref|YP_006111690.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
gi|416337796|ref|ZP_11674110.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
gi|419945326|ref|ZP_14461772.1| deoxyribodipyrimidine photolyase [Escherichia coli HM605]
gi|422359050|ref|ZP_16439699.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
gi|422748275|ref|ZP_16802188.1| DNA photolyase [Escherichia coli H252]
gi|422753323|ref|ZP_16807150.1| DNA photolyase [Escherichia coli H263]
gi|422839181|ref|ZP_16887153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H397]
gi|432357002|ref|ZP_19600249.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE4]
gi|432361474|ref|ZP_19604659.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE5]
gi|432572651|ref|ZP_19809142.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE55]
gi|432586956|ref|ZP_19823327.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE58]
gi|432596598|ref|ZP_19832881.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE62]
gi|432753455|ref|ZP_19988022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE22]
gi|432777594|ref|ZP_20011845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE59]
gi|432786383|ref|ZP_20020549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE65]
gi|432819975|ref|ZP_20053689.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE118]
gi|432826190|ref|ZP_20059846.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE123]
gi|433004183|ref|ZP_20192621.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE227]
gi|433011392|ref|ZP_20199797.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE229]
gi|433152807|ref|ZP_20337774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE176]
gi|433162508|ref|ZP_20347267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE179]
gi|433167517|ref|ZP_20352185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE180]
gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
S88]
gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252]
gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263]
gi|371611202|gb|EHN99728.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H397]
gi|388415881|gb|EIL75789.1| deoxyribodipyrimidine photolyase [Escherichia coli HM605]
gi|430879812|gb|ELC03143.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE4]
gi|430889992|gb|ELC12639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE5]
gi|431110989|gb|ELE14906.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE55]
gi|431123428|gb|ELE26166.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE58]
gi|431133501|gb|ELE35491.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE62]
gi|431305065|gb|ELF93581.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE22]
gi|431330194|gb|ELG17476.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE59]
gi|431341512|gb|ELG28519.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE65]
gi|431370977|gb|ELG56770.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE118]
gi|431374386|gb|ELG59978.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE123]
gi|431517504|gb|ELH95026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE227]
gi|431519604|gb|ELH97056.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE229]
gi|431678188|gb|ELJ44196.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE176]
gi|431691178|gb|ELJ56638.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE179]
gi|431693517|gb|ELJ58930.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE180]
Length = 472
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 234/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P +R ++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFR---SS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|376253206|ref|YP_005141665.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae PW8]
gi|372116290|gb|AEX68760.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae PW8]
Length = 446
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 211/454 (46%), Gaps = 49/454 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPWR 172
+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP-- 179
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
T +I DLG + S + + W+PG A + L E ++ L RY +R
Sbjct: 180 ---IDDTETQAAIADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLDDR 231
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ + TS LSP L FGELSV +V W EG F R + R++
Sbjct: 232 DRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDF 275
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWATG 348
+ + P + FPW D G+F+A WR GRTG LVDAGMRELWATG
Sbjct: 276 AWHRLDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWATG 333
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
+HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D R
Sbjct: 334 TMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFR 393
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPEL-ARMPTEWI 441
+ +P+ Q +FDP+G Y +WLP + A P E I
Sbjct: 394 IFNPDTQARRFDPDGTYRNRWLPIMSADYPEEAI 427
>gi|315605497|ref|ZP_07880534.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
str. F0310]
gi|315312764|gb|EFU60844.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
str. F0310]
Length = 475
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 219/452 (48%), Gaps = 36/452 (7%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK---------EEGQFYPGRVSRWWLK 56
T++W R DLR+ D+PAL AA V W + G G +RWW
Sbjct: 3 TLIWLRDDLRLADHPALTAACTGAHGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYH 62
Query: 57 QSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
+SL L L LG L+ + ++ + + ++ T V + Y P + D +IK+
Sbjct: 63 RSLQQLAPRLADLGIPLIFARGDAA-RIMRRVVDTLQPTFVHWTRRYAPAACRLDAAIKQ 121
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM-----------EPA 165
+L + V S+ G LL EPW + G + F + + + EP
Sbjct: 122 EL-KSRTEVHSHPGSLLAEPWLMRTASGSHYQVFTPFSHAVADLPLTPLLPEPSPVDEPD 180
Query: 166 SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
++ G + ++ED+GL D+ L + W PG A + L + ++ L
Sbjct: 181 GAATDLATLREDGVLH--NLEDIGLLDDGPDWWEDTLAQHWEPGELAARQQL-DAIDGWL 237
Query: 226 LRYYKNRQKLGG-NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFL 284
Y K R G STS +SP L GELS R Q L A + E + +
Sbjct: 238 PGYAKRRDLPGEETSTSRISPRLRCGELSPR---------QALAAARSSTAAGEDIAAWT 288
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
R + RE+ +L + + P+ + FP+H D +AWRQGRTG LVD GM +L
Sbjct: 289 RQLYWREFCWHLLHHREHLEDTPMRPAFEEFPYHPDDHLVRAWRQGRTGIDLVDGGMWQL 348
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
W TGW+HNR+R++ +S K +L PW+ G ++FW+TL+DAD + + WQ+++GS D
Sbjct: 349 WQTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGSGADAA 408
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPE-LAR 435
R+ +PE+Q ++FDP YV++W+PE LAR
Sbjct: 409 PYFRIFNPELQRTRFDPHSSYVKRWIPEGLAR 440
>gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
Length = 463
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/488 (30%), Positives = 244/488 (50%), Gaps = 50/488 (10%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVW RRDLR+ DNPAL AA+ G V VY + G +RWWL SL LG+S
Sbjct: 6 IVWLRRDLRMADNPALYHAAKAGPVVAVYVLDDERPKDHKLGGAARWWLHHSLESLGKSF 65
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ + +VL + ++ + L +A+ A V N Y+P + + + ++
Sbjct: 66 GARNSRIVLRRGDA-VEELKTVANAVGAETVHANRHYEPWW-----RKAQGELAEELELK 119
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
Y+G+ L+ P + G + + + K + +M P +P + + G + + +
Sbjct: 120 LYDGNYLFPPGHVTTGSGDPYKIYTPF-SKAMLQEMPPRDEVPEPETLSSPG--EWPASD 176
Query: 187 DLGLED--ESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLS 244
DLG + ++ L W+ G A + L + ++ + +Y R + TS +S
Sbjct: 177 DLGDWNLLPTKPDWAGGLRDFWTVGEDAAHERLDWWSDE-VDKYDDGRNMPSVDETSQMS 235
Query: 245 PYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTH 304
P+LH GE+S +++ K++ +G ++ + + + R+Y++ + FP
Sbjct: 236 PHLHHGEISPVQIWHRF--------KDKRSDGWKT---YEKELIWRDYAQNVICQFPAYP 284
Query: 305 ERPLLSNLKYFPWHADLG------------NFKAWRQGRTGYPLVDAGMRELWATGWIHN 352
+ W AD+ K W++G+TGYP+VDAGMR+LW TGW+HN
Sbjct: 285 KESYRDG-----WDADMAWRNPNRGHIIQEELKRWQKGQTGYPIVDAGMRQLWQTGWMHN 339
Query: 353 RIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R+R+I +SF +K LL+ WR G K+FWDTL+DAD + WQ++SG+ D + R+ +P
Sbjct: 340 RVRMIAASFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRIMAP 399
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL 472
Q KFD G Y+R+++PELA +P E IH P + G + +YP II
Sbjct: 400 LTQSEKFDAAG-YIREYVPELADLPDETIHDP--------EEHGCKPD-DYPSKIIAHKE 449
Query: 473 GRERLTQA 480
GRER +A
Sbjct: 450 GRERALEA 457
>gi|420822431|ref|ZP_15290112.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
gi|391695682|gb|EIT28232.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
Length = 480
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 230/476 (48%), Gaps = 27/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL AA +D SV V+ P + +L+Q+L +L
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L + G L + + A+ L++ + + ++ Y+ +RD ++ +L E
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I+ QS++ +L P + + F + +Q + M +P + A +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L D ++S ++ L + G A + L F + + Y + R T
Sbjct: 185 ----LSPLPF-DYPQQSVDSQL---FPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGT 236
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G LS R+ F LW + E E +S F +L + RE+ R+L
Sbjct: 237 SCLSPYLVLGVLSPRQCFNRLWAE-----SPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ KAW+QG+TGYP+VDA MR++ TGW+HNR+R+I
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD +G ++R+WLPELA +P IH PW A + L+YP P++D R
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWR------WAERQQQHLDYPVPLVDHKQAR 461
>gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
[Acinetobacter baumannii ATCC 17978]
Length = 480
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 243/489 (49%), Gaps = 34/489 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKIGFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILPPWRLV 174
L G + ++ ++ I ++ + F A+ C L P P +
Sbjct: 121 LNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK-- 178
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRG----WSPGWSNADKVLTEFVEQHLLRYYK 230
Q +D +++ L DE EK + L + W G A + L +F+E+ + Y
Sbjct: 179 QNEVPLDFLQGKNIDL-DEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKV 237
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRA 286
R +TS LSPYL+ G LS+R+ Q L+ Q NF EG+++ +L
Sbjct: 238 ERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQ-----HGNFHLVNEGQQT---WLDE 289
Query: 287 MGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P + + W+ + + AW+ G+TG P+VDAGMR+L
Sbjct: 290 LLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLL 349
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 350 QTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVP 409
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPK
Sbjct: 410 YFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGLNYPK 461
Query: 466 PIIDLDLGR 474
PI+DL R
Sbjct: 462 PIVDLKETR 470
>gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
SH205]
gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
SH205]
Length = 480
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/494 (28%), Positives = 235/494 (47%), Gaps = 31/494 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLR+ D AL A ++G + P++ + + + + L
Sbjct: 1 MSNTYQLIWFRQDLRVRDQAALWHARQNGPCIAICILSPEQWQRHDDADIKIDFYLRQLL 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVS-----LVRDHSIK 115
L L L L++F T + E + A K+ F ++Y + L RD+ ++
Sbjct: 61 ELKTELSKLQIPLLIF-TVPLWDDIAEFFVDL-AEKLPFENVYANIEFGFNELKRDNEVQ 118
Query: 116 EKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQ 175
+ L + + L+ I + + F A+ C Q P Q
Sbjct: 119 QSLNRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELGLPQCYPIPETQ 178
Query: 176 AAGTIDGCSIEDLGLEDESEKSSNALLGRG---WSPGWSNADKVLTEFVEQHLLRYYKNR 232
A D C + L++ ++ + + W G +A +L +FVE+ +++Y R
Sbjct: 179 ATLEFDFCQLHQTDLQNIQNHYADKIKDKNASEWRVGEKHARNLLNQFVEKRIIQYNALR 238
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRAMG 288
TS LS YL+ G +S+R+ Q + Q + +F EG+++ +L +
Sbjct: 239 DYPSVKGTSQLSAYLNIGIISIRQCIQAAFRHQ-----QGDFVIQSEGQQT---WLNELL 290
Query: 289 LREYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ +++ F+FP + P + + W D F+ W++G+TG P+VDAGMR+L +T
Sbjct: 291 WREFYQHILFDFPQVSKHLPFKAATQNVQWRDDSEGFEKWKRGQTGIPIVDAGMRQLLST 350
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 351 GWMHNRVRMICAMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGWQWCASTGTDAAPYF 410
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q KFD G Y+R+W+PEL ++ + IH P+ A L L+YP PI
Sbjct: 411 RIFNPISQSQKFDENGVYIRRWVPELTQLDAKRIHEPY--------AQNTALKLDYPHPI 462
Query: 468 IDLDLGRERLTQAI 481
+DL RER QA
Sbjct: 463 VDLKTSRERAIQAF 476
>gi|21910695|ref|NP_664963.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315]
gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS315]
gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
SSI-1]
Length = 469
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/498 (28%), Positives = 236/498 (47%), Gaps = 47/498 (9%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+++WFRRDLRI+D ALA A S E+ R ++ L++ +
Sbjct: 3 SVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNNEQLNLLHSRNQSSFITSVLAF-RKL 61
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKA-TKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
LK G +L L + + + ++ +K T V FN+ +RD + + GI+
Sbjct: 62 LKCEGIDLYLMYGD-LMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIA 120
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYW--------DKCLQMQMEPASIL---PPWRL 173
V +Y L+ EI ++ G + F Y+ + +++++ L P +
Sbjct: 121 VHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLETPDDV 180
Query: 174 VQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQ 233
++ + +D+ DE A K L F++ L Y+ NR
Sbjct: 181 LRTVESFKDEKYQDVATFDE-------------------ASKQLNRFIQDQLAAYHANRD 221
Query: 234 KLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
TS LSP+L G + +R V+ + + N G+ + FL+ + R++
Sbjct: 222 FPAQLGTSRLSPFLRIGAIGIRTVYHAV-------RQAPNSLGQAT---FLKELAWRDFY 271
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ +P +P+ W + F+ W++G+TGYP+VDA M +L TGW+HNR
Sbjct: 272 NMVYVAYPDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 331
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R+IV+SF K LL WR G +YF L+D D +I GWQ+ + + D R+ +P
Sbjct: 332 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 391
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
QG +FDP+GE+++ +LP+L +P +++H PW P + ++ +G +YP+PI+D
Sbjct: 392 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 451
Query: 474 RERLTQAIFKM-WEMEAA 490
RE QAI K W E A
Sbjct: 452 RE---QAIAKYEWAKEKA 466
>gi|432849009|ref|ZP_20080379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
gi|431401751|gb|ELG85085.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
Length = 472
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/484 (31%), Positives = 239/484 (49%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLNGLRI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E I + A T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLNELIWREFYRHLI 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP + W ++ + +AW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIVWTDRVQWQSNSAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW + AGV L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKVVHEPW----KWAQKAGVT--LDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
Length = 471
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 227/487 (46%), Gaps = 41/487 (8%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVW RRDLR+ D+PAL AA G PV ++ G + L +L+ G++L
Sbjct: 7 IVWVRRDLRLADHPALTAACESGQ--PVIAVYIHDDQVASLGGAQKLRLDLALAQFGKTL 64
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
G+ L+L K + L L + I A V ++ LY + RD ++K L GI +
Sbjct: 65 ADRGSRLILRKGPA-LGVLRDLIRETGAGAVYWSRLYHATANDRDAAVKSALKADGIVAR 123
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWRLVQAAGTIDGCSI 185
S+ G LL+EPW + + G + + W+ E A LP P ++ A ++
Sbjct: 124 SFTGHLLFEPWTVATKTGGFYKVYTPMWNAV--RGNEVAEPLPCPAKITAPAVWPASDAL 181
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
D L ++ + +L R + G A L F+ + Y K R TS LS
Sbjct: 182 ADWQLRRAMQRGGD-ILARHCTVGEDAARDRLGAFIADRVANYVKGRDLPAIKGTSNLSE 240
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
L FGE+S R + + +GK FL+ + RE++ +L + P
Sbjct: 241 NLTFGEISPRMCWHA--------GQRALRDGKADAEVFLKELVWREFAYHLAHHTP---- 288
Query: 306 RPLLSNLK----YFPWHADLG-NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
R L N K FPW+ + AW+QGRTG P VDA MRE++ TG +HNR R+IV+S
Sbjct: 289 RILTDNWKEDWDAFPWNTQITPEVAAWQQGRTGIPFVDAAMREMYVTGTMHNRGRMIVAS 348
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
+ K LL W+ G+ +F D L+D D + +GWQ+ +GS PD R+ +P Q KFD
Sbjct: 349 YLTKHLLTHWKVGLDWFADHLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFD 408
Query: 421 PEGEYVRQWLPELARMPT-------EWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLG 473
+ YV++W+ E R P E I W P+ YP P++ + G
Sbjct: 409 KDRAYVKRWIAERYRSPQDSALTYFEMIPQSWQMRPDA----------AYPDPVVTPEQG 458
Query: 474 RERLTQA 480
R R A
Sbjct: 459 RTRALDA 465
>gi|445405991|ref|ZP_21431586.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-57]
gi|444781769|gb|ELX05684.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-57]
Length = 480
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 146/489 (29%), Positives = 243/489 (49%), Gaps = 34/489 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELAALHIPLVIQVIPDWKEIANFISDFSKTYNIENVYANIEIGVNELKRDKTVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILPPWRLV 174
L + G + ++ ++ I ++ + F A+ C L P P +
Sbjct: 121 LNQHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK-- 178
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKV----LTEFVEQHLLRYYK 230
Q +D +++ L DE EK + + + W +++ L +F+E+ + Y
Sbjct: 179 QNEVPLDFLQGKNIDL-DEIEKLFCSSISKEQQDLWPVSEQYALEQLDQFIEESVCHYKV 237
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRA 286
R TS LSPYL+ G LS+R+ Q L+ Q NF EG+++ +L
Sbjct: 238 ERDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQ-----HGNFHLVNEGQQT---WLDE 289
Query: 287 MGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P N + W+ + + AW+ G+TG P+VDAGMR+L
Sbjct: 290 LLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLL 349
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 350 QTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVP 409
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPK
Sbjct: 410 YFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGLNYPK 461
Query: 466 PIIDLDLGR 474
PI+DL R
Sbjct: 462 PIVDLKETR 470
>gi|397774714|ref|YP_006542260.1| DNA photolyase FAD-binding protein [Natrinema sp. J7-2]
gi|397683807|gb|AFO58184.1| DNA photolyase FAD-binding protein [Natrinema sp. J7-2]
Length = 469
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 146/487 (29%), Positives = 236/487 (48%), Gaps = 22/487 (4%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+ W RRDLR DN LA AA+ D V P++ P P RV+ L ++L
Sbjct: 3 VHWHRRDLRPGDNRGLARAASTDEPVVPLFVLDPSVLEHASPIRVA--CLLEALESFRSW 60
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
++ G++L++ + E++ A+ +A A VV+N Y ++ RD +++ L + GI+
Sbjct: 61 YRAHGSDLLVVRGEAS-TAVPRVATAHDAATVVWNEDYSGLARERDQAVRTALTDEGIAA 119
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S + + +EP I +G ++ F +W K P + P + A S+
Sbjct: 120 ESVHDAIHHEPGSITPNQGDHYSVFSYFWKKWRDRDKRPPADEPEASDLAAVSGDPIPSL 179
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+++G +D + A + + +F + Y R + TS LSP
Sbjct: 180 DEVGFDDPEATPPTVTT--------AAARERVADFCSGPIYEYAALRDYPAESGTSRLSP 231
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRYLCFNFPFTH 304
+L +G + R+++ A + + +ESV F R + RE Y+ L FN P T
Sbjct: 232 HLKWGTIGPRELYAATERAAERAASDGD---RESVREFQRQLAWREFYAHVLAFN-PNTV 287
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
WH D +AW+ G TGYP+VDAGMR+L A GW+HNR+R++V+SF K
Sbjct: 288 TEDFSGYDNEIDWHDDPDALEAWKAGTTGYPIVDAGMRQLRADGWMHNRVRMLVASFLTK 347
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LL WR G +F + L D D D+ GWQ+ + D R+ +P QG ++DP+ E
Sbjct: 348 DLLTDWRAGYAWFREKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYDPDAE 407
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y+R+++PE A E IH D P + + +YP PI+D R+R A+F+
Sbjct: 408 YIREYVPEFADATAEEIHGWHDLEPPERE----RIAPDYPGPIVDHAERRDRAI-ALFER 462
Query: 485 WEMEAAD 491
EA++
Sbjct: 463 ARGEASE 469
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 152/500 (30%), Positives = 245/500 (49%), Gaps = 56/500 (11%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE----EGQFYPGRVSRWWLKQSL 59
N + W RRDLRI DN L A+++G V +C E RV+ ++ L
Sbjct: 3 NLILFWHRRDLRISDNVGLTQASQEGQTV-VGIFCLDENILKRDDIASARVT--YMIGCL 59
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+L + K +G++L++ + + A+ + + ++A V +N +P S RD +KE L
Sbjct: 60 QHLQKRYKQIGSQLLIM-SGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLE 118
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPP--------- 170
I V+++ LL+ P EI+ ++ + +W K Q + + + P
Sbjct: 119 AANIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFW-KNWQGKKKSNPLNTPVLKGLTEDQ 177
Query: 171 WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYK 230
+ + G ID + + LG + N L+ PG + A + L +F + Y +
Sbjct: 178 LQYTKKIGVIDLPTAKQLGFNWD-----NKLI---LEPGETAALEKLEKFSNGAISSYQE 229
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF-------EGKESVTFF 283
R + TS LS L FG + +R V WAK + E E++ +
Sbjct: 230 QRNFPSLDGTSQLSVALKFGTIGIRTV----------WAKTQELIENCYSSEVFENIETW 279
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
+ + RE+ +Y+ +++P P + K FPW + +F+AW +G TGYP+VDA MR+
Sbjct: 280 QKEIAWREFYQYVMYHYPELETGPYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQ 339
Query: 344 LWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403
L TGW+HNR R+IV+SF K L++ W+WG KYF L+D DL + GWQ+ + S D
Sbjct: 340 LNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDP 399
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNY 463
L R+ +P Q K+DPEGEY+RQW+ EL + T+++ P +A G Y
Sbjct: 400 KPL-RIFNPVSQTQKYDPEGEYIRQWVCELRSVDTQYLVTG-KIPAEEREAIG------Y 451
Query: 464 PKPIIDLDLGRERLTQAIFK 483
P PI+D + Q +FK
Sbjct: 452 PLPIVD-----HKKQQQLFK 466
>gi|375292051|ref|YP_005126590.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae INCA 402]
gi|371581722|gb|AEX45388.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae INCA 402]
Length = 446
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 208/446 (46%), Gaps = 48/446 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPWR 172
+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAKQP-- 179
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
T +I DLG + S + + W+PG A + L E ++ L RY +R
Sbjct: 180 ---IDDTETQAAIADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLDDR 231
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ + TS LSP L FGELSV +V W EG F R + R++
Sbjct: 232 DRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDF 275
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWATG 348
+ + P + FPW D G+F+A WR GRTG LVDAGMRELWATG
Sbjct: 276 AWHRLDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWATG 333
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
+HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D R
Sbjct: 334 TMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFR 393
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELA 434
+ +P+ Q +FDP+G Y +WLP ++
Sbjct: 394 IFNPDTQARRFDPDGTYRTRWLPIMS 419
>gi|432552665|ref|ZP_19789396.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE47]
gi|431086950|gb|ELD92966.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE47]
Length = 472
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 236/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|375107513|ref|ZP_09753774.1| deoxyribodipyrimidine photolyase [Burkholderiales bacterium
JOSHI_001]
gi|374668244|gb|EHR73029.1| deoxyribodipyrimidine photolyase [Burkholderiales bacterium
JOSHI_001]
Length = 498
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 242/498 (48%), Gaps = 49/498 (9%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWC------------PKEEGQFYPGRVS 51
+R +VWFRRDLR +D+ AL+ A R WC P+ + + S
Sbjct: 14 DRALVWFRRDLRADDHAALSQALRSAH----QVWCAFVFDRAILDTLPRADRRVEFIHHS 69
Query: 52 RWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYD-PVSLVR 110
L L LGQS GA L++ +T A L ++A + VF+H D P +L R
Sbjct: 70 LVDLDAQLRALGQSHGVDGAGLIVLHGHATAA--LPRLAAELGVQAVFSHHDDEPDALAR 127
Query: 111 DHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQMQ-----M 162
D + L + GI ++S+ +++E E+ G A+ F Y W + +Q
Sbjct: 128 DAKVLGALADAGILLRSFKDVVVFERSEVLTGAGGAYNVFTPYKNAWLRRVQADDLAAHA 187
Query: 163 EPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVE 222
L + G I S+ +G E + ++ G S A ++L +F+E
Sbjct: 188 VARHAAALAALPEGRGGI--PSLAQIGFEPTNLRALK------LPTGSSGAHELLDDFLE 239
Query: 223 QHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF 282
+ + RY ++R S LS +L FG +S+R++ + W + G
Sbjct: 240 R-IDRYAEHRDFPAIRGPSYLSTHLRFGTVSIRRLAREAWQRMQ--------GGSRGAEV 290
Query: 283 FLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW----HADLGNFKAWRQGRTGYPLVD 338
+L + R++ + + P W HAD F AW +GRTGYPLVD
Sbjct: 291 WLSELIWRDFYHQILHHHPRVVGHCFKPEYDRLKWDHGKHAD-ALFAAWCEGRTGYPLVD 349
Query: 339 AGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISG 398
A M +L +G++HNR+R++V+SF K L L WR G YF L D DL + GWQ+ +
Sbjct: 350 AAMHQLNDSGYMHNRLRMVVASFLTKDLGLDWRRGEAYFALHLNDFDLAANNGGWQWAAS 409
Query: 399 SLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE 458
+ D R+ +P Q KFDPEG++++++LP+LA++ + +H PW A P L AAG+E
Sbjct: 410 TGCDAQPYFRIFNPVSQSEKFDPEGKFIKRYLPQLAKLSAKDVHAPWLAKPLELAAAGLE 469
Query: 459 LGLNYPKPIIDLDLGRER 476
LG +YP+P++D DL R+R
Sbjct: 470 LGRDYPQPVVDHDLARQR 487
>gi|448402770|ref|ZP_21572126.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
gi|445664862|gb|ELZ17552.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
Length = 465
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 145/471 (30%), Positives = 227/471 (48%), Gaps = 20/471 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+ W RRDLR DN LA AA DG V P++ P P RV+ L ++L L
Sbjct: 3 VHWHRRDLRPNDNRGLARAAGDGPVVPLFVLDPTVLEYASPIRVA--CLLEALDDLRAWY 60
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+ G+EL++ + E++ A + E + A +VV+N Y ++ RD +++ L + ++ +
Sbjct: 61 RERGSELLVVRGEAS-AVVPEVAAEYDAARVVWNEDYSGLAAERDRAVRAALEDADVTCE 119
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
S + + +EP I +G ++ F +W K + P + + S+
Sbjct: 120 SVHDAIHHEPGSITPNQGAHYSVFSYFWKKWRDREKRDPVDEPDAADLATVSSDPIPSLA 179
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
DLG DE E + + + A + + F + Y R + TS LSP+
Sbjct: 180 DLGF-DEPEATPPTVTT-------AAARERVAAFCAGPIYDYAAQRDYPAESGTSRLSPH 231
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRYLCFNFPFTHE 305
L +G + R+++ + + + +ESV F R + RE Y+ L FN P T
Sbjct: 232 LKWGTIGPRELYAT---TERAAGRAPTDDDRESVRAFQRQLAWREFYAHVLEFN-PETVT 287
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
W D +AW+ G TGYP+VDAGMR+L A GW+HNR+R++V+SF K
Sbjct: 288 ENFSGYENEIEWRNDPAELEAWKAGETGYPIVDAGMRQLRAEGWMHNRVRMLVASFLTKD 347
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LL WR G +F L D D D+ GWQ+ + D R+ +P QG ++DP+GEY
Sbjct: 348 LLTDWRAGYDWFRAKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYDPDGEY 407
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+R+++PELA IH W + A ++ YP PI+D RER
Sbjct: 408 IREYVPELADATAAEIHT-WH---ELAPAEREQIAPEYPAPIVDHADRRER 454
>gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
Length = 475
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/495 (30%), Positives = 232/495 (46%), Gaps = 30/495 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW RRDLR DN AL A G SV ++ P + + + ++ + L L Q
Sbjct: 3 LVWLRRDLRAIDNTALQQAIASGESVSALFVATPHQWQRHDLAPIQADFIYRRLFTLQQE 62
Query: 66 LKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +L L + + A + E ++ +V+ N Y+ RD ++ L LG
Sbjct: 63 LAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNEQQRDSQTEQALSTLG 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I + + L P ++ +++G F F + L P + P A
Sbjct: 123 IDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRFTPPVIVSTP-----TAAVNPL 177
Query: 183 CSIEDLGLEDESEKSSNALLGRG-WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
E L +E + + + W + L +F +Q + Y++ R TS
Sbjct: 178 LDSEHNALWNERQDFAYPRVSSDQWPVDFETVRHQLRQFCQQSIDDYHQQRDFPAQEGTS 237
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRYLCFNF 300
LSPYL G LSVR QC+ ++A+ ++ +L + RE Y L F
Sbjct: 238 RLSPYLAIGMLSVR---QCI---ARMYAQSQSGLLSSGAEIWLSELIWREFYQHLLVFES 291
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
+ + S W D F W +G TGYP+VDA MR+L TGW+HNR+R++V+S
Sbjct: 292 KLSKGKAFHSWGDQLQWSDDKQAFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMVVAS 351
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K L + W WG +YF L+D D + GWQ+ + + DG R+ +P QG +FD
Sbjct: 352 FLTKDLHIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFD 411
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
P G+++RQW+PELA +PT +IH PW P GV+ L YP P++D + RE +T
Sbjct: 412 PSGQFIRQWVPELASVPTAYIHTPWKWP-------GVK-SLLYPSPMVDHKVARE-VTLR 462
Query: 481 IFKMWEMEAADNAMD 495
++K EA DN +D
Sbjct: 463 LYK----EAKDNPID 473
>gi|376247446|ref|YP_005139390.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC04]
gi|372114014|gb|AEX80072.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC04]
Length = 446
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 211/454 (46%), Gaps = 49/454 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPWR 172
+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP-- 179
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
T +I DLG + S + + W+PG A + L E ++ L RY +R
Sbjct: 180 ---IDDTETQAAIADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLDDR 231
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ + TS LSP L FGELSV +V W EG F R + R++
Sbjct: 232 DRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDF 275
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWATG 348
+ + P + FPW D G+F+A WR GRTG LVDAGMRELWATG
Sbjct: 276 AWHRLDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWATG 333
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
+HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D R
Sbjct: 334 TMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFR 393
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPEL-ARMPTEWI 441
+ +P+ Q +FDP+G Y +WLP + A P E I
Sbjct: 394 IFNPDTQARRFDPDGTYRTRWLPIMSADYPEEAI 427
>gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
Length = 475
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 151/487 (31%), Positives = 229/487 (47%), Gaps = 35/487 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLRI DN AL AA RD V ++ P + Q + ++ QSL L
Sbjct: 5 LVWLRNDLRINDNSALHAACRDPGARVLALFIATPGQWQQHHMAPKQAAFIYQSLCLLQA 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L ++ AA LE ++ + ++ +N+ Y+ RD + +++L +
Sbjct: 65 ALAERGIPL-HYQQCDDFAASLEVLADFCQQQQVDQLFYNYQYEINERQRDAAAEKRLDD 123
Query: 121 LGISVQSYNGDLLYEPWEIYDERG---HAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
G+ Q ++ LL P + FT F + + L + + P R
Sbjct: 124 QGVICQGFDDSLLLAPGSVQTGNHTMFKVFTPFSKAFVRRLHQGLPECHMAPRARQGAPI 183
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
D +ED A G A + L F +Q ++ Y R K
Sbjct: 184 NVEKKIPPFDYPMEDFDVTLFPA--------GEEAALQQLRHFAQQSVVDYAAERDKPAV 235
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
+ TS LS YL G LS R QCL +IL + +G + + L + RE+ R+L
Sbjct: 236 DGTSRLSVYLATGVLSPR---QCL--HRILKQHPDALDGGLAFVW-LNELIWREFYRHLM 289
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP +P + ++ W + + AW+QG+TGYP+VDA MR+L A GW+HNR+R+
Sbjct: 290 VAFPALCKHQPFVGWTRHVRWQKNQRHLTAWQQGKTGYPIVDAAMRQLNALGWMHNRLRM 349
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+ F VK LL+ W G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 350 IVACFLVKDLLIDWHDGERYFMQQLMDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 409
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
+FDP+G ++RQWLPELA +P IH P W N + L YP PI++ R
Sbjct: 410 ERFDPQGAFIRQWLPELAVVPDAHIHQPHVWAQKNN--------MTLAYPAPIVEHKDAR 461
Query: 475 ERLTQAI 481
++ A
Sbjct: 462 KKTLDAF 468
>gi|445449585|ref|ZP_21444310.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-92]
gi|444756307|gb|ELW80853.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-A-92]
Length = 480
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 242/489 (49%), Gaps = 34/489 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILPPWRLV 174
L G + ++ ++ I ++ + F A+ C L P P +
Sbjct: 121 LNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK-- 178
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRG----WSPGWSNADKVLTEFVEQHLLRYYK 230
Q +D +++ L DE EK + + + W G A + L +F+E+ + Y
Sbjct: 179 QNEVPLDFLQGKNIDL-DEIEKLFCSSISKEQQDLWPVGEQYALEQLDQFIEESVCHYKL 237
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRA 286
R +TS LSPYL+ G LS+R+ Q L+ Q NF EG+++ +L
Sbjct: 238 ERDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQ-----HGNFHLVNEGQQT---WLDE 289
Query: 287 MGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P N + W+ + + AW+ G TG P+VDAGMR+L
Sbjct: 290 LLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGETGIPIVDAGMRQLL 349
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 350 QTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVP 409
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPK
Sbjct: 410 YFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGLNYPK 461
Query: 466 PIIDLDLGR 474
PI+DL R
Sbjct: 462 PIVDLKETR 470
>gi|421655515|ref|ZP_16095838.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-72]
gi|408508840|gb|EKK10519.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
Naval-72]
Length = 480
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 146/489 (29%), Positives = 243/489 (49%), Gaps = 34/489 (6%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
M ++WFR+DLRI D+ AL A++ G + P++ Q + + + L
Sbjct: 1 MSNAYQLIWFRQDLRIHDHAALWHASQQGPSLGLVILSPEQWKQHADAPIKISFYLRQLR 60
Query: 61 YLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNHLYDPVS-LVRDHSIKEK 117
L + L +L LV+ +A + S + V+ ++ V+ L RD ++++
Sbjct: 61 TLQKELAALHIPLVIQVIPDWKEIANFISDFSKTYNIENVYANIEIGVNELKRDKTVQDY 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKC---LQMQMEPASILPPWRLV 174
L + G + ++ ++ I ++ + F A+ C L P P +
Sbjct: 121 LNQHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNK-- 178
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKV----LTEFVEQHLLRYYK 230
Q +D +++ L DE EK + + + W +++ L +F+E+ + Y
Sbjct: 179 QNEVPLDFLQGKNIDL-DEIEKLFCSSISKEQQDLWPVSEQYALEQLDQFIEESVCHYKL 237
Query: 231 NRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENF----EGKESVTFFLRA 286
R TS LSPYL+ G LS+R+ Q L+ Q NF EG+++ +L
Sbjct: 238 ERDFPHIQGTSKLSPYLNIGILSIRQCLQALFRNQ-----HGNFHLVNEGQQT---WLDE 289
Query: 287 MGLREYSRYLCFNFPFTHER-PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ +++ F+FP + P N + W+ + + AW+ G+TG P+VDAGMR+L
Sbjct: 290 LLWREFYQHILFDFPHVSKHIPFKKNTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLL 349
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHE 405
TGW+HNR+R+I + F K LL+ WR G ++F L+D DL + GWQ+ + + D
Sbjct: 350 QTGWMHNRVRMITAIFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVP 409
Query: 406 LERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPK 465
R+ +P Q KFDPEGEY+RQW+ ELA + + IH P+ ++ +LGLNYPK
Sbjct: 410 YFRIFNPIAQSKKFDPEGEYIRQWVKELAHLDNKTIHEPY--------SSKTDLGLNYPK 461
Query: 466 PIIDLDLGR 474
PI+DL R
Sbjct: 462 PIVDLKETR 470
>gi|420691989|ref|ZP_15175191.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
gi|391568598|gb|EIS16299.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
Length = 467
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 230/476 (48%), Gaps = 27/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL AA +D SV V+ P + +L+Q+L +L
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L + G L + + A+ L++ + + ++ Y+ +RD ++ +L E
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I+ QS++ +L P + + F + +Q + M +P + A +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L D ++S ++ L + G A + L F + + Y + R T
Sbjct: 185 ----LSPLPF-DYPQQSVDSQL---FPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGT 236
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G LS R+ F LW + E E +S F +L + RE+ R+L
Sbjct: 237 SCLSPYLVLGVLSPRQCFNRLWAE-----SPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ KAW+QG+TGYP+VDA MR++ TGW+HNR+R+I
Sbjct: 292 YPRLCQHHPFIGWADGVVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD +G ++R+WLPELA +P IH PW A + L+YP P++D R
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWR------WAERQQQHLDYPVPLVDHKQAR 461
>gi|433591509|ref|YP_007281005.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333271|ref|ZP_21522481.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|433306289|gb|AGB32101.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623512|gb|ELY76922.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
Length = 467
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 151/489 (30%), Positives = 236/489 (48%), Gaps = 26/489 (5%)
Query: 7 IVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+ W RRDLR +DN LA AAA D V P++ P P RV+ L ++L L
Sbjct: 3 VFWHRRDLRPDDNRGLARAAAADEPVVPLFVLDPTVLDYASPVRVAT--LLEALEDLRSQ 60
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
+ G++L++ + E++ AA+ E + AT VV+N Y ++ RD +++ L + GI+
Sbjct: 61 YRERGSDLLVVRGEAS-AAVPEVATEHDATTVVWNEDYSGLARERDRAVRAALEDEGIAA 119
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSI 185
+S + + +EP I +G ++ F +W K + P + A ++
Sbjct: 120 ESVHDAIHHEPGSITPNQGDHYSVFSYFWKKWRDRDKREPAPEPAAADLAAVSGEPIPTL 179
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
DLG +D + A + + +F + Y R + TS LSP
Sbjct: 180 ADLGFDDPEATPPTVTT--------AAARERVADFCSGPIYDYADRRDYPAESGTSRLSP 231
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE-YSRYLCFNFPFTH 304
+L +G + R+++ A+ + +ESV F R + RE Y+ L FN P T
Sbjct: 232 HLKWGTIGPRELYAATEKA----AERAAGDDRESVREFQRQLAWREFYAHVLAFN-PETV 286
Query: 305 ERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK 364
W D +AW+ G TG P+VDAGMR+L A GW+HNR+R++V+SF K
Sbjct: 287 TEDFSGYEHEIEWRDDPDALEAWQAGETGCPIVDAGMRQLHAEGWMHNRVRMLVASFLTK 346
Query: 365 VLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGE 424
LLL WR G +F L D D D+ GWQ+ + + D R+ +P QG ++DP+ E
Sbjct: 347 DLLLDWRAGYDWFRRKLADHDTANDVGGWQWAASTGTDAQPYFRVFNPMKQGREYDPDAE 406
Query: 425 YVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKM 484
Y+R+++PELA IH W + A + +YP PI+D RE QAI M
Sbjct: 407 YIREYVPELADASPAEIHG-WH---ELSDAERKRIAPDYPAPIVDHAARRE---QAI-AM 458
Query: 485 WEMEAADNA 493
+E D++
Sbjct: 459 FERARDDDS 467
>gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
Length = 477
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/485 (31%), Positives = 227/485 (46%), Gaps = 28/485 (5%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
+VWFR DLR DN AL AAA +Y P + E P +V +WL+ +LS L
Sbjct: 2 NLVWFRCDLRTSDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLSELQ 59
Query: 64 QSLKSLGAELVLFKTE---STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ E L S + V N Y RD ++ L E
Sbjct: 60 RQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVARHLRE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ--MQMEPASILPPWRLVQAAG 178
G++ + L + P + G F F + C + Q PA + P +
Sbjct: 120 QGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQALPA-VQPRPQPQPPHR 178
Query: 179 TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGN 238
+ G + D + A L W G + A + L +F EQHL Y++ R
Sbjct: 179 LLPGDPLPD---AVPGFAAPGAGLRALWPAGETAAQQRLRDFAEQHLDDYHEQRDFPALP 235
Query: 239 STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLREYSRYLC 297
TS LSPYL G LS R QCL L A F G ++ ++ + RE+ +++
Sbjct: 236 GTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGRQGAATWINELLWREFYKHIL 290
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P + RP + W +AW+QGRTG P++DA MR+L ATGW+HNR+R+
Sbjct: 291 VGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRM 350
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
+V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL +P Q
Sbjct: 351 VVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQS 410
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+FDP GE++R WLPELA + + IH P G+ G++YP+ ++DL RER
Sbjct: 411 KRFDPRGEFIRHWLPELAGLERKAIHDP--------SRLGLFAGVDYPQSMVDLKASRER 462
Query: 477 LTQAI 481
A
Sbjct: 463 ALAAF 467
>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
Length = 476
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 244/491 (49%), Gaps = 41/491 (8%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN L+AA + + ++ P + P RV+ +L L L
Sbjct: 6 LFWHRRDLRISDNIGLSAARQKSPKIVGIFCLDPNILNKDDVAPARVT--YLIGCLQELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q + G++L++ + E + A+ + +KA+ V +N +P + RD + L E GI
Sbjct: 64 QQYQQAGSQLLILRGEPS-QAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEKGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME-PASILPPWR--------LV 174
+ +++ LL+ P ++ + + F +W +++ + P L + L
Sbjct: 123 ARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRNWSKLKKQSPLQKLEGLKGLTEEELTLT 182
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
AG ID + + LG E N LL PG + A K L EF + Y + R
Sbjct: 183 INAGVIDLPTAKKLGYAWE-----NPLL---LDPGETAAKKRLEEFCSSAINEYQEQRNF 234
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
+ TS LS L FG + +R V++ ++ + E ++S+ + + + RE+ +
Sbjct: 235 PAVDGTSRLSAALKFGAIGIRTVWKATLE---VYENSRSDEARKSIETWQQELAWREFYQ 291
Query: 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
+ + FP E + + FPW + F+AW +G+TGYP+VDA MR+L T W+HNR
Sbjct: 292 HCMYFFPELAEGSYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRC 351
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+SF K L++ W+WG KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 352 RMIVASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKPL-RIFNPAS 410
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE-LGLNYPKPIIDLDLG 473
Q KFDPEGEY+RQWLPEL + TE++ K +E YP+PI+D
Sbjct: 411 QAQKFDPEGEYIRQWLPELRSVDTEFLISG--------KIPSLERYQCGYPEPIVD---- 458
Query: 474 RERLTQAIFKM 484
+ QA FK+
Sbjct: 459 -HKKRQAEFKL 468
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 231/476 (48%), Gaps = 33/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAA-RDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARDRSPKIIGVFCLDPAILERDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLLIICGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV------ 174
GI V+++ LL+ P ++ +T + +W Q+ L + +
Sbjct: 120 KGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLDENEGE 179
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ A TI+ ++E+LG N L +PG A L EF + + Y ++R
Sbjct: 180 KLAETINLPTLENLGF-----TWQNPL---PLAPGEKAARSRLEEFCQGVINNYQEDRNF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R + W + L E K+S+ + + + RE+
Sbjct: 232 PAFDGTSRLSAALKFGAIGIRTI----WTATLELLENCRAEEAKDSIITWQQELAWREFY 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP ++FPW + +F+AW QG+TGYP+VDA MR+L TGW+HNR
Sbjct: 288 QHCLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 348 CRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 406
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+RQWLPELA + TE++ + + G YP+PI+D
Sbjct: 407 SQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEPIVD 455
>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
Length = 481
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 222/476 (46%), Gaps = 25/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VW R DLR+ DN AL AA +D V V+ PK+ +L+Q+L L
Sbjct: 5 LVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQLLQG 64
Query: 65 SLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L S G L + + ++ L + + +N Y+ RD + +L
Sbjct: 65 ALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQLNRQ 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I+ S++ +L P + + F + +Q + M +P + Q +G +
Sbjct: 125 SIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQNSGAV 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ +E S + N+L G A + L F + + Y + R + T
Sbjct: 185 ELSPLEPFDYPQHS--ADNSLF----PAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGT 238
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G +S R+ F L + + E +S F +L + RE+ R+L
Sbjct: 239 SCLSPYLALGIVSPRQCFNRLRAE-----CPDLLERSDSGAFTWLNELIWREFYRHLLVA 293
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ AW+QG+TGYP+VDA MR+L TGW+HNR+R+I
Sbjct: 294 YPRLCQHHPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMIS 353
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG +
Sbjct: 354 ASFLVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 413
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD EG ++R+WLPELA +P IH PW A + LNYP P++D L R
Sbjct: 414 FDKEGTFIRRWLPELAAVPDSDIHQPWR------WAQRQQQHLNYPPPLVDHKLAR 463
>gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421176913|ref|ZP_15634571.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CI27]
gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404530283|gb|EKA40290.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CI27]
Length = 481
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 226/492 (45%), Gaps = 43/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLG 63
++WFR DLR DN AL AAA +Y P + E P +V +WL+ +L L
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCVALYLLSPAQWREHDDAPCKVD-FWLR-NLGELQ 64
Query: 64 QSLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+ L +L L++ + + V N Y RD ++ ++L E
Sbjct: 65 RQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLRE 124
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTI 180
G++ S+ L + P + G F F + C + RL QA +
Sbjct: 125 QGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHE------------RLYQALPGV 172
Query: 181 DGCSIEDLGLEDESEKSSNAL---------LGRGWSPGWSNADKVLTEFVEQHLLRYYKN 231
S+ +A+ L R W G A + L F +QHL Y++
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRGFADQHLADYHER 232
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEG-KESVTFFLRAMGLR 290
R TS LSPYL G LS R QCL L A F G ++ ++ + R
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPR---QCL--DAALVANRGEFSGGQQGAATWINELLWR 287
Query: 291 EYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ +P + RP + W +AW+QGRTG P++DA MR+L ATGW
Sbjct: 288 EFYKHILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR+R++V+ F K LL+ WR G ++F L+D DL + GWQ+ + + D RL
Sbjct: 348 MHNRLRMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRL 407
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q +FDP GE++R WLPELA + + IH P + G+ G++YP+P++D
Sbjct: 408 FNPLSQSERFDPRGEFIRHWLPELAGLERKAIHDP--------SSLGLFAGVDYPRPMVD 459
Query: 470 LDLGRERLTQAI 481
L RER A
Sbjct: 460 LKASRERALAAF 471
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/478 (29%), Positives = 232/478 (48%), Gaps = 22/478 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
++ WFRRDLR+ DN AL AA + V P Y ++ + G + +L +L L +
Sbjct: 8 SLHWFRRDLRLTDNTALHAAQTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGNLESLAK 67
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGIS 124
+L+++G+ L++ ++ T++ + I AT + N DP + + +LG++
Sbjct: 68 NLEAIGSRLII-RSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALCNKLGVA 126
Query: 125 VQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM-QMEPASILPPWRLVQAAGTIDGC 183
+ +L++P E+ G + F Y L + + +P S V+ G
Sbjct: 127 FHTCKDAVLHQPQEVLTGNGGPYRVFTPYSKNWLSLPKAQPLSK------VRTLGDAPSP 180
Query: 184 SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ-HLLRYYKNRQKLGGNSTSL 242
I+ L L +PG A + FV+ L RY + R TS
Sbjct: 181 KIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRLPRYEETRNFPSVPGTSQ 240
Query: 243 LSPYLHFGELSVRKVF-QCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSP L +G +S+R+++ +C +Q L + + +++ + RE+ + +P
Sbjct: 241 LSPDLRYGLISIRELYHRC---QQALAQAGGQPAAQSGINTYIKELAWREFYMAVLHFYP 297
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
E +L+ WH D AW++GRTG+PLVDAGMR+L ATGW+HNR+R+IVS F
Sbjct: 298 EVLETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGWMHNRVRMIVSMF 357
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K L + W G +F L+D ++ + GWQ+ +G+ D R+ +P Q ++DP
Sbjct: 358 LTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRIQNPWTQTKRYDP 417
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
EG+Y++ W+PEL +P E APP G+ L YP PI+D R+R Q
Sbjct: 418 EGKYIKTWVPELKDVPAEMFF----APPT----NGLPLAKGYPLPIVDHATERDRTLQ 467
>gi|358638826|dbj|BAL26123.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. KH32C]
Length = 480
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 236/492 (47%), Gaps = 41/492 (8%)
Query: 6 TIVWFRRDLRIEDNPALAAA----ARDGSVF----PVYTWCPKEEGQFYPGRVSRWW--- 54
+VWFRRDLR D+ AL A AR VF + P+ E + R+ W
Sbjct: 5 ALVWFRRDLRCFDHAALHHALRRFARVHCVFVFDREILDALPRREDR----RIEFIWRSI 60
Query: 55 --LKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
L L L + GA L++ + A+ + S + V N Y+P ++ RD
Sbjct: 61 RELDAELDRLSRQAGGAGAGLIVRHARAD-EAVPQLASELGVAAVFANRDYEPAAIARDR 119
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR 172
+ ++LVE GI+ + + +++E E+ + G ++ F Y K + ++ + +
Sbjct: 120 RVAQRLVEAGIAFEDFRDQVIFERDELLTQAGAPYSVFTPY--KNAWLARFDSARMEAFP 177
Query: 173 LVQAAGTI----DGCSIEDLGLEDESEKSSNALLGRGWSP-GWSNADKVLTEFVEQHLLR 227
+ +AA + DG I +L + +N LG+ P G S +L +FV + +
Sbjct: 178 IAEAAAGLAPKADGERIPELA--EIGFLPTN--LGQLRLPAGMSGGRALLGDFVRR-IGD 232
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y + R S LS +L FG LS+R++ W EG +L +
Sbjct: 233 YAEARDYPSRKGVSYLSTHLRFGTLSIRELASLAWT-----------EGSAGAQTWLSEL 281
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ + + ++ P + W F AW +GRTGYPLVDA MR+L T
Sbjct: 282 IWREFYQMILYHHPRVVDACFRPEYDRIVWDDAPELFAAWCEGRTGYPLVDAAMRQLNGT 341
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
G++HNR+R++ +SF K L + WR G +YF L D DL + GWQ+ + + D
Sbjct: 342 GYMHNRLRMVAASFLTKDLGIDWRRGERYFAAQLNDYDLAANNGGWQWAASTGCDAQPYF 401
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
R+ +P Q +FDP+G ++R+++PELAR+ + +IH PW P A GV +G +YP P+
Sbjct: 402 RIFNPVTQSERFDPDGAFIRRYVPELARVASRYIHAPWKMPEAEQAACGVRIGRDYPAPV 461
Query: 468 IDLDLGRERLTQ 479
+D RER Q
Sbjct: 462 VDHAQARERTLQ 473
>gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
Length = 497
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/495 (30%), Positives = 238/495 (48%), Gaps = 41/495 (8%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTW-------CPKEEGQFYPGRVSRWWL 55
+ +VW RRDLR D+ AL A R V+ + + P+ + + R S L
Sbjct: 10 DAALVWCRRDLRAHDHAALYHALRAARRVWVAFVFDTEILDPLPRTDRRVEFIRDSLVDL 69
Query: 56 KQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIK 115
L LG+S + G L++ + + +A+ V N Y+P ++ RD ++
Sbjct: 70 DAQLHTLGRSHGTEGVGLIV-RHGRARDEIPRLAAALHVQAVYANTDYEPAAVARDAQVR 128
Query: 116 EKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAY---WDKCLQ---MQMEP----A 165
L + GI+ ++++ E+ G + F Y W K L+ +Q P A
Sbjct: 129 GALAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKLEPFYLQAYPVGRHA 188
Query: 166 SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHL 225
L P +AAG ++ +G E + L +PG + +L +F ++ +
Sbjct: 189 GALAPRPAGEAAGV---PTLAAIGFEPTN------LAALKLAPGTAGGRALLEDFGDERI 239
Query: 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
RY + R S LS +L FG LS+R++ + W + G +L
Sbjct: 240 DRYDQTRDFPAVKGPSYLSVHLRFGTLSIRELARLAW--------DRARAGSRGAEVWLS 291
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPW----HADLGNFKAWRQGRTGYPLVDAGM 341
+ R++ + + P ER W HAD F AW +GRTGYPLVDA M
Sbjct: 292 ELIWRDFYHQVLHHHPQVVERSFKPEYDKIKWEHGKHAD-ALFAAWCEGRTGYPLVDAAM 350
Query: 342 RELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLP 401
++ TG++HNR+R++V+SF K L L WR G +YF + L D DL + GWQ+ S S
Sbjct: 351 LQINQTGYMHNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGC 410
Query: 402 DGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGL 461
D R+ +P Q KFD +G+++R++LP+LA +P +H PWDA P L AAG+ LG
Sbjct: 411 DAQPYFRIFNPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAPWDAKPLDLVAAGLVLGR 470
Query: 462 NYPKPIIDLDLGRER 476
+YP+PI+ +L RER
Sbjct: 471 DYPEPIVRHELARER 485
>gi|376289283|ref|YP_005161530.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae C7 (beta)]
gi|372102679|gb|AEX66276.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae C7 (beta)]
Length = 446
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 208/446 (46%), Gaps = 48/446 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAA-----ARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+VWFR DLR+ DNPAL A A + VY E G G +WWL SL
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVY--IANEVGVRPLGGAVKWWLHHSLL 62
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L + L G L + + L L + +++ AT V N YDP + D +
Sbjct: 63 ALSEQLAQRGVRLHVLSGDP-LTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASA 121
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTF--------DAYWDKCLQMQMEPASILPPWR 172
+ V + LL EP EI G ++ F DA D L P P
Sbjct: 122 HDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP-- 179
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNR 232
T +I DLG + S + + W+PG A + L E ++ L RY +R
Sbjct: 180 ---IDDTETQAAIADLGWDAWWAAS----ISKAWTPGEPAAREALAE-LDDILPRYLDDR 231
Query: 233 QKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+ + TS LSP L FGELSV +V W EG F R + R++
Sbjct: 232 DRPDIDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDF 275
Query: 293 SRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKA----WRQGRTGYPLVDAGMRELWATG 348
+ + P + FPW D G+F+A WR GRTG LVDAGMRELWATG
Sbjct: 276 AWHRLDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWATG 333
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
+HNR+R++ +S VK L + WR G ++FWDTL+DAD + WQ+++GS D R
Sbjct: 334 TMHNRVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFR 393
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELA 434
+ +P+ Q +FDP+G Y +WLP ++
Sbjct: 394 IFNPDTQARRFDPDGTYRTRWLPIMS 419
>gi|186682403|ref|YP_001865599.1| DNA photolyase [Nostoc punctiforme PCC 73102]
gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 481
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 240/495 (48%), Gaps = 48/495 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLRI DN LAAA R V V+ P E P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNTGLAAAKRRSPKVVGVFCLDPHILERDDVAPVRVT--YMIGCLQKLQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
+ +G++L++ + + A+ AI A V +N +P S RD +I L E GI
Sbjct: 64 ERYAQVGSQLLILHADP-VQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEKGI 122
Query: 124 SVQSYNGD-LLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+ N D +L P EI +T + +W + P V+ ++G
Sbjct: 123 EFLNQNWDQILNSPDEIRTGGNSPYTVYTPFWKNWITK--------PKANPVETLQNVEG 174
Query: 183 CSIEDLGLEDESEKSSNAL-------LGRGW------SPGWSNADKVLTEFVEQHLLRYY 229
+ E E K S +L LG W SPG + A + L EF + + Y
Sbjct: 175 LT----EAEQEIAKLSGSLTLPSAKDLGFIWDEQLIISPGEAAAQERLEEFTNKAITEYQ 230
Query: 230 KNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGL 289
+ R + TS LS L FG + +R V+Q ++ + ++ E E ++ + + +
Sbjct: 231 EQRNFPAVDGTSQLSAALKFGVIGIRTVWQAT-IEALENSRSE--ETAVNIRTWQQELAW 287
Query: 290 REYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
RE+ ++ +NFP + K FPW + +F+AW +GRTGYP+VDA MR++ +GW
Sbjct: 288 REFYQHAMYNFPELADGAFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGW 347
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+HNR R+IV+SF K LL+ + G KYF L+D DL + GWQ+ + S D + R+
Sbjct: 348 MHNRCRMIVASFLTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKPV-RI 406
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+P Q KFDPEGEY+RQW+ EL + TE++ PP A G YP PI+D
Sbjct: 407 FNPASQTQKFDPEGEYIRQWVSELRSVDTEYLVTG-KIPPLERHAVG------YPDPIVD 459
Query: 470 LDLGRERLTQAIFKM 484
++ Q FK+
Sbjct: 460 -----HKIQQNQFKL 469
>gi|420547711|ref|ZP_15045581.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
gi|391424563|gb|EIQ86924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
Length = 487
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 229/476 (48%), Gaps = 27/476 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL AA +D SV V+ P + +L+Q+L +L
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L + G L + + A+ L++ + + ++ Y+ +RD ++ +L E
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGTI 180
I QS++ +L P + + F + +Q + M +P + A +
Sbjct: 125 AIPCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
+ L D ++S ++ L + G A + L F + + Y + R T
Sbjct: 185 ----LSPLPF-DYPQQSVDSQL---FPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGT 236
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF-FLRAMGLREYSRYLCFN 299
S LSPYL G LS R+ F LW + E E +S F +L + RE+ R+L
Sbjct: 237 SCLSPYLVLGVLSPRQCFNRLWAE-----SPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 FP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 358
+P P + W+ KAW+QG+TGYP+VDA MR++ TGW+HNR+R+I
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSK 418
+SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
FD +G ++R+WLPELA +P IH PW A + L+YP P++D R
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWR------WAERQQQHLDYPVPLVDHKQAR 461
>gi|237747870|ref|ZP_04578350.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
gi|229379232|gb|EEO29323.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
Length = 498
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/500 (30%), Positives = 238/500 (47%), Gaps = 27/500 (5%)
Query: 5 RTIVWFRRDLRIEDNPALAAAA--RDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ +VWFR+DLR+ DN ALAAA +D +V+ ++T + + ++ + L L
Sbjct: 11 KHLVWFRQDLRLTDNKALAAACEDKDATVYALFTAPLSQWEEHGVSERQVAFMHRHLEKL 70
Query: 63 GQSLKSLGAELVLF---KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
+ L+ +G LV + +++ + V FN+ Y+ RD +++ L
Sbjct: 71 SEGLERIGIPLVCHVCGNFDDAARFVIDFCRREQIDDVFFNNQYELNEQRRDRWLEDNLP 130
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM--QMEPASILPPWRLVQAA 177
+ S+ Y+ LL P + +G + F + L+ + S+ P R +
Sbjct: 131 Q-ETSLNRYDDCLLLPPGAANNRQGEMYRVFTPFKRTFLEKLGSADTGSLPQPERRLHVT 189
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
I G S E S G ++PG A +L F + + Y K R +
Sbjct: 190 -RIKGSSSPFFPYEKVS-------FGAEYTPGEEAAIALLENFCREKVHDYDKTRDRPDL 241
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
+ TS +S YL G LS R+ L + + ++ K +L + RE+ +L
Sbjct: 242 DGTSRVSAYLAIGVLSPRQCLNALLAE----VPDAIWQSKGGGAVWLNELVWREFYYHLI 297
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
FP P L W+A+ +F+AW +GRTGYP+VDA MREL TGW+HNR+R+
Sbjct: 298 AAFPRLCRYEPFLEWTDRIVWNANEADFRAWVEGRTGYPIVDAAMRELKETGWMHNRLRM 357
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF VK LL+ WR G +YF L+D +L + GWQ+ + + D R+ +P QG
Sbjct: 358 IVASFLVKDLLVDWRKGERYFMSQLIDGNLPANNGGWQWSASTGVDAMPWFRIFNPVTQG 417
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFDP G YVR+WLPEL +P IH P L A + L+YP P++D RE+
Sbjct: 418 QKFDPAGHYVRRWLPELKDVPEGDIHTP------QLWAKKNHVVLDYPDPVVDHRQAREK 471
Query: 477 LTQAIFKMWEMEAADNAMDS 496
A + + ++ DS
Sbjct: 472 TLNAFNAVRQKAGGNDRPDS 491
>gi|350563289|ref|ZP_08932111.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
gi|349779153|gb|EGZ33500.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
Length = 478
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 237/490 (48%), Gaps = 45/490 (9%)
Query: 5 RTIVWFRRDLRIEDN-PALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
R ++WF+RDLR+ D+ P A A + S Y P Q G ++ WL SL L
Sbjct: 2 RQLIWFQRDLRLNDHAPIHHALATEHSCLFAYFHDP----QLTQGEANQAWLAASLEKLQ 57
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLKS GA+L L S + ++ + T+V+++ E +L +
Sbjct: 58 QSLKSKGADL-LISDGSFKNHFEDVLNRYQITEVLYHFEQGEPYYTLQQQALEVCKQLKV 116
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
+ ++ L P I ++G + + + K + E + +A G +
Sbjct: 117 KLTPFDQAWL-SPESILTQQGKPYGVYTPFSKKVFSLLDE---------VPKAEGAANWS 166
Query: 184 SIEDLGLEDESEKSSNALLGR----------------GWSPGWSNADKVLTEFVEQHLLR 227
+++ + LE S+ + A L R G W A+ LT+ +
Sbjct: 167 NLKTIDLE-PSDANIPASLARIKNTQWAKRLLSHWQMGEQAAWQQANNFLTDSIH----H 221
Query: 228 YYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM 287
Y K R TS LS +LHFGE+S + + + + ++ + E++ F+R +
Sbjct: 222 YPKQRDFPSIMGTSQLSIHLHFGEISSVAILEAC--RNAITSRPAD---SEAIHAFIRQL 276
Query: 288 GLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWAT 347
RE++RYL F P + + W A AW+ G TG P++DAGMR+LW T
Sbjct: 277 IWREFARYLLFFNPDLQTQAYQAKFNQLSWPAPDEQVTAWQTGHTGVPIIDAGMRQLWQT 336
Query: 348 GWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELE 407
GW+HNR+R++V+S+ K L W G ++F TLLDAD+ +++GWQ+++G D
Sbjct: 337 GWMHNRVRMLVASWLTKNLNQHWLVGQQWFEHTLLDADIANNVMGWQWVAGCGVDAAPYF 396
Query: 408 RLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
RL +P +Q KFDP+G Y+R+W+PELA +P IH PW+A +++K L Y P+
Sbjct: 397 RLFNPVVQSEKFDPQGHYIRKWMPELAPLPNHLIHAPWEA-ASIIKQQFPALAAQY--PL 453
Query: 468 IDLDLGRERL 477
D +L + RL
Sbjct: 454 HDPNLKQSRL 463
>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
Length = 473
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/486 (30%), Positives = 235/486 (48%), Gaps = 38/486 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFRRDLR+ D+PAL AA G + PV+ ++ G +W L SL+ L +
Sbjct: 8 LVWFRRDLRLADHPALCAAIEGGGPIIPVFI---HDDSVAGLGAAPKWRLGLSLASLARD 64
Query: 66 LKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISV 125
L+ G+ L+L + S L L ++ A V ++ LYDP ++ RD ++K L E G +
Sbjct: 65 LEDRGSRLIL-RRGSALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVKSALREDGAAA 123
Query: 126 QSYNGDLLYEPWEIYDERGHAFTTFDAYW----DKCLQMQME-PASILPPWRLVQAAGTI 180
QS+ G +++EPW + + G + + W D+ + + + P++IL P
Sbjct: 124 QSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAP---------- 173
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSP----GWSNADKVLTEFVEQHLLRYYKNRQKLG 236
D + D GL+D ++ P G + A L F + + Y R
Sbjct: 174 DMWPVSD-GLDDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPA 232
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+TS LS L +GE+S R+ + + G + +L+ + RE++ +L
Sbjct: 233 VEATSSLSENLTYGEVSPRQCWHA--------GQRALHAGAQGAEHWLKELVWREFAYHL 284
Query: 297 CFNFPFTHERPLLSNLKYFPWH--ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRI 354
++ P ++ FPW AD + AW+QGRTG P VDA MRE++ TG +HNR
Sbjct: 285 MYHTPHILTDNWRTDWDAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRA 344
Query: 355 RVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEI 414
R+IV+S+ K L+ W+ G+ +F D L D D + +GWQ+ +G PD R+ +PE
Sbjct: 345 RMIVASYLTKHLMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPET 404
Query: 415 QGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
Q KFD +G Y R+W+ E P + A P + +YP ++DL GR
Sbjct: 405 QLEKFDRDGAYTRRWIAEGQGQPQATALDYFKAIPRRWSLSSTS---SYPNRLVDLAGGR 461
Query: 475 ERLTQA 480
R A
Sbjct: 462 NRALAA 467
>gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
Length = 472
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 234/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P +R ++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFR---SS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|389686026|ref|ZP_10177349.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
gi|388550368|gb|EIM13638.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
Length = 481
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 146/482 (30%), Positives = 219/482 (45%), Gaps = 24/482 (4%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKE--EGQFYPGRVSRWWLKQSLSYLGQ 64
++W R DLR+ DN AL+AA + G +Y P++ P +V +WL+ +L L
Sbjct: 3 LIWLRSDLRLHDNTALSAATQRGPTVVLYLLSPRQWQAHDDAPCKVD-FWLR-NLEQLSS 60
Query: 65 SLKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
L L L++ + E LL+ + + N Y RD ++ L
Sbjct: 61 DLTRLNIPLLIRQAPSWEQAPQVLLQLCRELAVEALHVNEEYGIHESRRDAAVASLLKSQ 120
Query: 122 GISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTID 181
G+S SY LL+ P + + G F F + C S LPP A
Sbjct: 121 GVSFHSYLDQLLFRPGSVLTKSGGYFQVFSQFRKVCYNRLH---SALPPQLAAPRAQAAL 177
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
+ L + E + L W G + A + L F E L+ Y R TS
Sbjct: 178 RIKADALPRQVEGFPTPGPHLQALWPAGETAAQQRLAHFAETQLVHYQAERDLPAKPGTS 237
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LSPYL G LS R QCL + + E G ++ + RE+ +++ +P
Sbjct: 238 QLSPYLAAGVLSPR---QCL-HAALQNNRGEFASGSPGAVTWINELLWREFYKHILVGYP 293
Query: 302 -FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
+ R + W AW+Q RTG P++DA MR+L TGW+HNR+R+IV+
Sbjct: 294 RVSRHRAFRPETEAVAWRDAPDELAAWQQARTGLPIIDAAMRQLLETGWMHNRLRMIVAM 353
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
F K LL+ WR G ++F L+D DL + GWQ+ S + D R+ +P Q +FD
Sbjct: 354 FLTKNLLIDWRQGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSQRFD 413
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGL-NYPKPIIDLDLGRERLTQ 479
+G ++R WLPELA + + IH+P A G G+ +YP+P++DL + RER
Sbjct: 414 SQGTFIRHWLPELAELNEKDIHNP--------AAIGGLFGVADYPRPMVDLSMSRERALA 465
Query: 480 AI 481
A
Sbjct: 466 AF 467
>gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
Length = 473
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/464 (31%), Positives = 226/464 (48%), Gaps = 25/464 (5%)
Query: 18 DNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLF 76
D+PAL AA AR G V PV +++ G +W L + +G++L G+ L+L
Sbjct: 17 DHPALRAAVARGGPVIPVMI---RDDQMHGLGAAPKWRLGLGIEAMGRALAEKGSRLILR 73
Query: 77 KTEST--LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLY 134
++ L+AL+E A V + YDP S+ RD +KE LV G+ QS+ G LL+
Sbjct: 74 SGQAAEVLSALVEETGA---GAVYWTRAYDPESIARDRGVKETLVAAGVEAQSHAGHLLF 130
Query: 135 EPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDES 194
EPWE+ +G + + YW+ ++ + A + P + A + ++D L
Sbjct: 131 EPWEVETGQGSYYKVYTPYWN-AVKSRDVAAPLTAPAEITAPAHWPESEDLDDWALGAAM 189
Query: 195 EKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSV 254
++ + L G + A L F+ Q + Y R G TS LS L GE+S+
Sbjct: 190 QRGAAVCLPHQ-HVGEATAQGRLGAFMAQGIAEYRARRDLPGEAGTSGLSENLSLGEISI 248
Query: 255 RKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKY 314
R+ + + A++E G E+ + + + RE++ +L ++ P
Sbjct: 249 RQCWHA-----AMRARQEGAAGAET---WAKELVWREFAYHLIYHTPRLASGNWREEWDG 300
Query: 315 FPWH--ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRW 372
FPW D AW+QGRTG VDA MRE++ TG +HNR R++V+S+ K LL WR
Sbjct: 301 FPWREAGDSPEVMAWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYLTKHLLTHWRV 360
Query: 373 GMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPE 432
G ++F + L D D+ + LGWQ+++GS PD R+ +P+ Q KFD G Y R W+ E
Sbjct: 361 GQRWFEEHLSDWDVASNALGWQWVAGSGPDAAPFFRVFNPDTQAEKFDKGGAYRRAWIAE 420
Query: 433 LARMPTEWIHHPWDAPPNVLKAAGVELGLNYP-KPIIDLDLGRE 475
P + ++A P + YP PI+ L GR+
Sbjct: 421 GQDAPPDTALAYFEAIPQSWN---LSASRRYPDSPIVGLKEGRQ 461
>gi|432717737|ref|ZP_19952735.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE9]
gi|431266356|gb|ELF57917.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE9]
Length = 472
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 236/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSV--FPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ SV +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF AA +E + + + T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+ID L + +++ + A L +F + Y + R
Sbjct: 179 GSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L GELS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGELSPR---QCL--HRLLAEQPQALDGGAG-SIWLNELIWREFYRHLI 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP + W ++ + KAW++G+TGYP+VDA MR+L TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNTTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++R+WLPEL +P + +H PW + AGV L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRRWLPELRDVPGKVVHEPW----KWAQKAGVT--LDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 231/476 (48%), Gaps = 33/476 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLS 60
N + W RRDLR+ DN L+ A R + V+ P E P RV+ +L L
Sbjct: 3 NLILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVA--YLLGCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L ++ + G++L++ + + L+ + A V FN +P + RD + L
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPS-QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV------ 174
GI V+++ LL P ++ +T + +W Q+ L + +
Sbjct: 120 KGIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLDENEGE 179
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ A TI+ ++E+LG N L +PG A L EF + + Y ++R
Sbjct: 180 KLAETINLPTLENLGF-----TWQNPL---PLAPGEKAARSRLEEFCQGVINNYQEDRNF 231
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQI-LWAKEENFEGKESVTFFLRAMGLREYS 293
+ TS LS L FG + +R + W + L E K+S+ + + + RE+
Sbjct: 232 PAFDGTSRLSAALKFGAIGIRTI----WTATLELLENCRAQEAKDSIITWQQELAWREFY 287
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
++ + FP ++FPW + +F+AW QG+TGYP+VDA MR+L TGW+HNR
Sbjct: 288 QHCLYFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNR 347
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
R+IV+SF K L++ W+ G KYF L D DL + GWQ+ + S D L R+ +P
Sbjct: 348 CRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPL-RIFNPA 406
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
Q KFDPEGEY+RQWLPELA + TE++ + + G YP+PI+D
Sbjct: 407 SQTQKFDPEGEYIRQWLPELASVDTEYL-----VTGKIPRLERHRCG--YPEPIVD 455
>gi|222155443|ref|YP_002555582.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
gi|387615975|ref|YP_006118997.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
857C]
gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
857C]
Length = 472
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 236/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLSELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str.
E2348/69]
gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
gi|417754463|ref|ZP_12402558.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2B]
gi|418995580|ref|ZP_13543194.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1A]
gi|419000853|ref|ZP_13548412.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1B]
gi|419006364|ref|ZP_13553820.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1C]
gi|419012229|ref|ZP_13559594.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC1D]
gi|419017135|ref|ZP_13564461.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1E]
gi|419022825|ref|ZP_13570067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC2A]
gi|419027634|ref|ZP_13574833.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2C]
gi|419033400|ref|ZP_13580498.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2D]
gi|419038415|ref|ZP_13585474.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2E]
gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O127:H6 str. E2348/69]
gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
gi|377848970|gb|EHU13946.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1A]
gi|377851165|gb|EHU16120.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1C]
gi|377853500|gb|EHU18399.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1B]
gi|377862994|gb|EHU27801.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC1D]
gi|377867109|gb|EHU31873.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1E]
gi|377868463|gb|EHU33207.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC2A]
gi|377879409|gb|EHU43982.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2B]
gi|377883819|gb|EHU48337.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2D]
gi|377885517|gb|EHU50012.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2C]
gi|377898016|gb|EHU62379.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2E]
Length = 472
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 236/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + + T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERAL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+ID L + +++ + A L +F + Y + R
Sbjct: 179 GSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SIWLNELIWREFYRHLI 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP + W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW + AGV L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKVVHEPW----KWAQKAGVT--LDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
Length = 481
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 242/493 (49%), Gaps = 27/493 (5%)
Query: 7 IVWFRRDLRIEDNPALAAAARD--GSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR DLR+ DN AL AA +D V V+ P++ +L +L L Q
Sbjct: 5 LVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLRCLQQ 64
Query: 65 SLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVEL 121
+L+ G L + + A+ L + + T++ +N Y+ RD + + L
Sbjct: 65 ALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQALA-- 122
Query: 122 GISV-QSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ-MQMEPASILPPWRLVQAAGT 179
G++V + ++ LL P + G + F + ++ +Q++ S LP + + G
Sbjct: 123 GVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPA-PVTRQQGD 181
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNS 239
+ ++ L D + +A + G + A + L +F + + Y+ R +
Sbjct: 182 V---TLAPLAPFDYPQAEVHA----DFPVGEAAAVQRLRQFCREQVAFYHALRDLPARPA 234
Query: 240 TSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN 299
TS LSPYL G LS R+ F L M+ W + EG + T+F + Y L F+
Sbjct: 235 TSKLSPYLALGILSPRQCFNRLRMEHPDWLSQP--EGG-AFTWFNELVWREFYRHLLVFS 291
Query: 300 FPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVS 359
+P + + W AW++G TGYP+VDA MR+L TGW+HNR+R+I +
Sbjct: 292 PSLCRHQPFIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICA 351
Query: 360 SFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKF 419
SF VK LL+ WR G +YF LLD DL + GWQ+ + + D R+ +P QG +F
Sbjct: 352 SFLVKDLLIDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 411
Query: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQ 479
DP+GE++R W+PELA++P + +H P D AA ++YP PI+D R R T
Sbjct: 412 DPDGEFIRHWIPELAQIPGKAVHQPHD------WAACQHRRIDYPAPIVDHKQARTR-TL 464
Query: 480 AIFKMWEMEAADN 492
A F+ + EAA +
Sbjct: 465 AAFEAAKQEAASS 477
>gi|433197274|ref|ZP_20381199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE94]
gi|431725146|gb|ELJ89056.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE94]
Length = 472
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 235/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P + + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPHQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
>gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a]
gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
ED1a]
Length = 472
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 153/484 (31%), Positives = 235/484 (48%), Gaps = 34/484 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF AA +E + + A T + +N+ Y+ RD + L
Sbjct: 65 ALAEKGIPL-LFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + EG + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQVLEGGPG-SVWLNELIWREFYRHLM 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
+P RP ++ W ++ + KAW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
KFD EGE++RQWLPEL +P + +H PW A + L+YP+PI+D R R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKW------AEKTGVTLDYPQPIVDHKEARLR 460
Query: 477 LTQA 480
A
Sbjct: 461 TLAA 464
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,987,834,449
Number of Sequences: 23463169
Number of extensions: 489905046
Number of successful extensions: 1035102
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4170
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 1019991
Number of HSP's gapped (non-prelim): 5892
length of query: 644
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 495
effective length of database: 8,863,183,186
effective search space: 4387275677070
effective search space used: 4387275677070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)