BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006464
(644 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/571 (66%), Positives = 464/571 (81%), Gaps = 16/571 (2%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG++L L KT +T++A+L+CI ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLV---QAAGTI 180
SVQSYNGDLLYEPWEIY E+G FT+F++YW KCL M +E + PPWRL+ AA I
Sbjct: 125 SVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAAEAI 184
Query: 181 DGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240
CSIE+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNST
Sbjct: 185 WACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNST 244
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNF 300
SLLSPYLHFGE+SVR VFQC MKQI+WA+++N EG+ES FLR +GLREYSRY+CFNF
Sbjct: 245 SLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNF 304
Query: 301 PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSS 360
PFTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSS
Sbjct: 305 PFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 364
Query: 361 FAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFD 420
FAVK LLLPW+WGMKYFWDTLLDADLECDILGWQYISGS+PDGHEL+RLD+P +QG+K+D
Sbjct: 365 FAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYD 424
Query: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
PEGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+D+D RE L +A
Sbjct: 425 PEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484
Query: 481 IFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVVLREKSTCPTISSNDQKVPS-- 538
I + E + M +E+V D+ + A+ ++E CP++SSNDQ+VPS
Sbjct: 485 ISRTREAQ----IMIGAAPDEIVADSFE-----ALGANTIKEPGLCPSVSSNDQQVPSAV 535
Query: 539 -FQNGKNNLPSRKRPKNVEEERQYPD-ELYS 567
+ K P + +++++ R + + EL+S
Sbjct: 536 RYNGSKRVKPEEEEERDMKKSRGFDERELFS 566
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/492 (70%), Positives = 410/492 (83%), Gaps = 2/492 (0%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLG 63
+TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLR 64
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
QSLK+LG+EL L KT ST++A+L+C+ A ATKVVFNHLYDPVSLVRDH++KEKLVE GI
Sbjct: 65 QSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRL--VQAAGTID 181
SVQSYNGDL P +R + KCL M +E + PPWRL + AA T+
Sbjct: 125 SVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLMPLSAAETVW 184
Query: 182 GCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241
CS+E+LGLE+E+EK SNALL R WSPGWSNADK+L EF+E+ L+ Y KN +K+ GNSTS
Sbjct: 185 ACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTS 244
Query: 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP 301
LLSPYLHFGE+SVR+VFQC MKQI+WA+++N EG+ES FLR +GLR+YSR +CFNFP
Sbjct: 245 LLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRIICFNFP 304
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
FTHE+ LLS+L++FPW AD+ FKAWRQGRTGYPLVDAGMRELWATGW+HNRIRVIVSSF
Sbjct: 305 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 364
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
AVK LLLPW+WGMKYFWDTLLDADLECDI+GWQYISGSLPDGHEL+RLD+P IQG+K+DP
Sbjct: 365 AVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDP 424
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481
EGEY+RQWLPELAR+PTEWIHHPWDAP VLKA+GVELG NY KPI+ +D RE LT+AI
Sbjct: 425 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVIDTARELLTKAI 484
Query: 482 FKMWEMEAADNA 493
+ E + A
Sbjct: 485 SRTREAQIMIGA 496
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/577 (55%), Positives = 420/577 (72%), Gaps = 20/577 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
IVWFRRDLR+EDNPALAAA R G V ++ W P+EEG ++PGRVSRWWLK SL+ L SL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
+SLG L+ ++ ++A+LL+ + + A+++ FNHLYDP+SLVRDH K+ L GI+V+
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPAS-ILPPWRLVQAAGTIDGCSI 185
S+N DLLYEPWE+ DE G F+ F A+W++CL M +P S +LPP +++ +G + C
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKII--SGDVSKCVA 192
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
+ L ED+SEK SNALL R WSPGWSN DK LT F+ LL Y KNR+K +TS LSP
Sbjct: 193 DPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSP 252
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
+LHFGE+SVRKVF + +KQ+ WA E N G+ESV FL+++GLREYSRY+ FN P++HE
Sbjct: 253 HLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHE 312
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPLL +LK+FPW D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VKV
Sbjct: 313 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 372
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
L LPWRWGMKYFWDTLLDADLE D LGWQYI+G+LPD E +R+D+P+ +G KFDP GEY
Sbjct: 373 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432
Query: 426 VRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMW 485
VR+WLPEL+R+PT+WIHHPW+AP +VL+AAG+ELG NYP PI+ LD + RL +A+ +MW
Sbjct: 433 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 492
Query: 486 EMEAADNAMDSNGTNEVVFDNSDRIQTPA-IPQVVLREKSTCPTISSN----DQKVPSFQ 540
++EAA A NG+ E + D+++ + P P+ + E++ ++ N DQ VPS
Sbjct: 493 QLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSIT 552
Query: 541 NGKNNLPSRKRPKNVEEERQYPDELYSCKNEAGNSGA 577
+ S RP+ EE + +N G+S A
Sbjct: 553 S------SLIRPEEDEESS------LNLRNSVGDSRA 577
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 240/473 (50%), Gaps = 30/473 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK----EEGQFYPGRVSRWWLKQSLSYL 62
++W RRDLR+ D+ ALA A R + V +C + P RV+ +L L L
Sbjct: 20 LLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVA--YLLGCLQSL 76
Query: 63 GQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
+ LG+EL++F+ + + L + + + A V + +P + RD ++ + L E G
Sbjct: 77 QDHYQRLGSELLVFQADP-VQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
+++ + L++ P E+ + G +T + +W Q+ S +P + +Q +
Sbjct: 136 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNW--SQLPKTSPVPTPKDLQG---LTP 190
Query: 183 CSIEDLGLEDESEKSSNALLGRGW------SPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
E L + A LG W +PG A++ L FV L Y +NR
Sbjct: 191 AEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPA 250
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L FG +S R ++Q W + + E + S+ + + + RE+ ++
Sbjct: 251 LDGTSQLSAALKFGVISPRTLWQTTLEA---WEQSRSEEARASIETWQQELAWREFYQHC 307
Query: 297 CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
++FP + P S + FPW + +F+AW +GRTGYP++DA M +L TGW+HNR R+
Sbjct: 308 LYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRM 367
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
IV+SF +K L+L W+WG YF TL D DL + GWQ+ + S D L R+ +P Q
Sbjct: 368 IVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPL-RIFNPHTQA 426
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
KFDPEGEY+R WLP+LAR T D L G +NYP+PI+D
Sbjct: 427 QKFDPEGEYIRTWLPQLARFDTG------DLLTGKL-TPGSRRSVNYPEPIVD 472
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 236/478 (49%), Gaps = 34/478 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFR+DLR+ DN ALAAA R+ S V +Y P++ + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKA----TKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF+ A +E + + A T + +N+ Y+ RD ++ L
Sbjct: 65 ALAEKGIPL-LFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ M P + P V+++
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGM-PECVAAP--KVRSS 178
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
G+I+ L +S +++ + A L +F + Y + R
Sbjct: 179 GSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 EGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGAG-SVWLNELIWREFYRHLI 286
Query: 298 FNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRV 356
P RP ++ W ++ + +AW++G+TGYP+VDA MR+L +TGW+HNR+R+
Sbjct: 287 TYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 IVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQG 416
I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P QG
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 SKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
KFD EGE++RQWLPEL +P + +H PW + AGV L+YP+PI++ R
Sbjct: 407 EKFDHEGEFIRQWLPELRDVPGKVVHEPW----KWAQKAGVT--LDYPQPIVEHKEAR 458
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 200 bits (508), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 152/479 (31%), Positives = 232/479 (48%), Gaps = 35/479 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+VWFRRDLR++DN ALAAA RD S V +Y P + ++ L+ L
Sbjct: 5 LVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQT 64
Query: 65 SLKSLGAELVLFKTESTLAALLECISAI----KATKVVFNHLYDPVSLVRDHSIKEKLVE 120
+L G L LF + A +E + + + + +N+ Y+ RD ++++ L
Sbjct: 65 ALAEKGIPL-LFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLP- 122
Query: 121 LGISVQSYNGDLLYEPWEIY---DERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + ++ ++ P + E FT F W K L+ + P P R+ A
Sbjct: 123 -SVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSGAL 181
Query: 178 GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKV-LTEFVEQHLLRYYKNRQKLG 236
T + + L + AL P NA L +F Q Y R
Sbjct: 182 ST----PLTPVSLNYPQQAFDAALF-----PVEENAVIAQLRQFCAQGADEYALRRDFPA 232
Query: 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYL 296
+ TS LS L G LS R QCL ++L + + +G + +L + RE+ R+L
Sbjct: 233 VDGTSRLSASLATGGLSPR---QCL--HRLLAEQPQALDGGPG-SVWLNELIWREFYRHL 286
Query: 297 CFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIR 355
+P +P + K W + F+AW++G TGYP+VDA MR+L ATGW+HNR+R
Sbjct: 287 MTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 356 VIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQ 415
+I +SF VK LL+ WR G +YF L+D DL + GWQ+ + + D R+ +P Q
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 406
Query: 416 GSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474
G +FD +GE++RQWLP L +P + IH PW + AGV L+YP+PI++ R
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPW----RWAEKAGVV--LDYPRPIVEHKQAR 459
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 163/544 (29%), Positives = 259/544 (47%), Gaps = 62/544 (11%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCP----KEEGQFYPGR----VSRW 53
G+ +++WFR+ LR+ DNPAL A++ ++PV+ P + F PG V+R
Sbjct: 23 GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRI 82
Query: 54 -WLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
+L +SL L SLK LG+ L++FK E L+ C+ K ++ F + DP D
Sbjct: 83 RFLLESLKDLDSSLKKLGSRLLVFKGEPG-EVLVRCLQEWKVKRLCFEYDTDPYYQALDV 141
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPA--- 165
+K+ G+ V S L+ P I ++ G ++ +F L++ EP+
Sbjct: 142 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSF-------LKVAGEPSCAK 194
Query: 166 -------SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSP---GWSNADK 215
S LPP + G + S+E+LG +D+ + W+P G S A K
Sbjct: 195 SELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQAD--------WTPFRGGESEALK 246
Query: 216 VLTEFVEQHLLRYYKNRQKLGGN-------STSLLSPYLHFGELSVRKVFQCLWMKQILW 268
LT+ + + N +K G+ +T+++SPYL FG LS R +QCL Q ++
Sbjct: 247 RLTKSISDKA--WVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCL---QNIY 301
Query: 269 AKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWR 328
K+ V+ L + RE+ F P + K PW+ D AWR
Sbjct: 302 -KDVKKHTSPPVSL-LGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWR 359
Query: 329 QGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLE 387
G+TGYP +DA M +L GW+H+ R V+ F + L + W G F L+D+D
Sbjct: 360 DGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWA 419
Query: 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447
+ W ++S S ++ R+ SP G K+DP+G+Y+R +LP L MP ++I+ PW A
Sbjct: 420 INNGNWMWLSCS-SFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTA 478
Query: 448 PPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNS 507
P +V A +G +YPKP++ D + + KM E A + MD E + D
Sbjct: 479 PLSVQTKANCIVGKDYPKPMVLHDSASKECKR---KMGEAYALNKKMDGKVDEENLRDLR 535
Query: 508 DRIQ 511
++Q
Sbjct: 536 RKLQ 539
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/488 (28%), Positives = 231/488 (47%), Gaps = 32/488 (6%)
Query: 1 MGGNRTI--VWFRRDLRIEDNPALA----AAARDGSVFPVYTWCPKEEGQFYPGRVSRWW 54
MG + ++ VWFRRD R+ D+ AL A + G + + + + P V +
Sbjct: 1 MGNSDSLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDPKTASVEP--VHHDY 58
Query: 55 LKQSLSYLGQSLKSLGAELVLFK--TESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
Q++ Q LK+ G +L + E L+ LL+ I A + + D +RD
Sbjct: 59 FFQTVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGD--GRLRDE 116
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR 172
+ + L + I ++ L EP ++ + G + F Y+ + + +++
Sbjct: 117 AAEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDV 176
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGR---GWSP-GWSNADKVLTEFVEQHLLRY 228
L+ G++ + D E+E N L+ + WS G +A K L F ++ L Y
Sbjct: 177 LL---GSVHKGTAPDR----EAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGY 229
Query: 229 YKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG 288
NR TS LSPY+ G +S R ++ IL A+ +++ S FL+ +
Sbjct: 230 KANRDFPSITGTSRLSPYIKTGAVSSRSIYY-----HILNAEADSY----SAETFLKELA 280
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
R++ R + F P +R ++ + W D + +W++G TG+P+VDAGMR+L G
Sbjct: 281 WRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEG 340
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
W+HNR+R+I +SF K LL+ WR G +YF L+D D +I GWQ+ + D R
Sbjct: 341 WMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFR 400
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
+ +P Q +FD G Y+R ++PEL +P +IH PW L +YP PI+
Sbjct: 401 IFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIV 460
Query: 469 DLDLGRER 476
D R++
Sbjct: 461 DHSKQRKK 468
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 147/524 (28%), Positives = 242/524 (46%), Gaps = 76/524 (14%)
Query: 5 RTIVWFRRDLRIEDNPALAAAARDGS--VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYL 62
+ ++WFR DLR+ DN AL A ++ + V ++ PK Q++ VS K+ +S++
Sbjct: 3 KNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPK---QWHNQSVS----KKKISFM 55
Query: 63 GQSLKSLGAEL-----VLFKTEST-----LAALLECISAIKATKVVFNHLYDPVSLVRDH 112
L SL EL +L+ EST + L+ K + +N+ Y RD+
Sbjct: 56 YYHLISLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDY 115
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWR 172
+K+KL + G V+ ++ +LL+ +I +++ + F + K +Q + +P
Sbjct: 116 LVKKKLSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQ---NLHNNIPQCF 172
Query: 173 LVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSP-GWSNADKVLTEFVEQHLLRYYKN 231
V + D D+ L S K+ N + + P G A L F Y+
Sbjct: 173 PVPSKRKSD----RDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLK 228
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCL----------------WMKQILWAKEENFE 275
R ++TS+LSPYL G +S R + L W QILW
Sbjct: 229 RDYPFLDATSMLSPYLSAGIISSRYCLKVLLKTKNSLPLNVLLTSPWFDQILW------- 281
Query: 276 GKESVTFFLRAMGLREYSRYLCFNFP-FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGY 334
RE+ +L FP + L++ K W ++ +F AW++G TG+
Sbjct: 282 --------------REFYYHLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGF 327
Query: 335 PLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQ 394
P++DAGMR+L GW+HNR+R+I SSF VK LL+ WR G ++F L+D DL + GWQ
Sbjct: 328 PIIDAGMRQLNELGWMHNRLRMITSSFLVKNLLINWREGEEHFISNLIDGDLALNNGGWQ 387
Query: 395 YISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHP--WDAPPNVL 452
+ + D R+ +P Q FD G ++++++PEL +P IH P W N
Sbjct: 388 WSASVGCDSVPYIRIFNPLHQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKN-- 445
Query: 453 KAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDS 496
++YP PII+ R + + ++FK ++ N + +
Sbjct: 446 ------FKIDYPNPIINYSESR-KTSLSLFKQARLKLHKNGLKN 482
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 214/447 (47%), Gaps = 15/447 (3%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VWFRRDLR DN AL AA G V +Y P++ Q + + + + L+ L Q
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 66 LKSLGAELVLFKT---ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122
L +L L + ++ A+ + + AT+V+ N Y+ RD ++ L E G
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQG 122
Query: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG 182
I +++ + P + ++G F F + L + P ++ R V
Sbjct: 123 IIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPP--VIGKNRPVALWNV--P 178
Query: 183 CSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242
++ +L E + W+ + L +F + + Y++ R TS
Sbjct: 179 SALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238
Query: 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP- 301
LSPYL G LS R QC+ L+ + E E +L + RE+ ++L P
Sbjct: 239 LSPYLAIGVLSAR---QCV---ARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPN 292
Query: 302 FTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361
+ R + W D F+ W +G+TGYP+VDA MR+L TGW+HNR+R+IV+SF
Sbjct: 293 LSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 352
Query: 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDP 421
K L + WRWG +YF L+D D + GWQ+ + + DG R+ +P QG KFDP
Sbjct: 353 LTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDP 412
Query: 422 EGEYVRQWLPELARMPTEWIHHPWDAP 448
G+++R+W+PEL + + +IH PW P
Sbjct: 413 NGDFIRRWVPELRSVSSAYIHQPWTYP 439
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 150/491 (30%), Positives = 225/491 (45%), Gaps = 59/491 (12%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQ 64
+V F DLR+ DNP L AA RD V P++ + +L L+ L
Sbjct: 4 AVVLFTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNPLAFLADCLAALDA 63
Query: 65 SLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLV---RDHSIKEKLVEL 121
L+ G L++ + E A E + T H+ VS R+ I+E L +
Sbjct: 64 GLRHRGGRLIVRRGE----AATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADS 119
Query: 122 GISVQSYNGDLL-YEPWEIYDERGH-AFTTFDAYWDK-----CLQMQMEPASILPPWRLV 174
G + ++ + P + G F F Y+ + Q P ++ P
Sbjct: 120 GRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTVRVP---- 175
Query: 175 QAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
DG + + L D E S L RG G K++T ++ + Y
Sbjct: 176 ------DGVASDPLPDRDCVENLSPGL-ARG---GEEAGRKLVTSWLNGPMADYEDGHDD 225
Query: 235 LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294
L G++TS LSP+LHFG +S ++ A+E+ G E+ F+R + R+
Sbjct: 226 LAGDATSRLSPHLHFGTVSAAELVHR--------AREKGGLGGEA---FVRQLAWRD--- 271
Query: 295 YLCFNFPFTHERPLLSNLKYFP----WHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
F+ +RP S Y P W +D AW+ G TGYPLVDA MR+L GW+
Sbjct: 272 ---FHHQVLADRPDASWSDYRPRHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWM 328
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
HNR R++ +SF K L + WR G ++F D L+D D+ + L WQ+++G+ D R+
Sbjct: 329 HNRARMLAASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVL 387
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE-LGLNYPKPIID 469
+P IQG +FD G+YVR W+PELA + IH PW K G++ GL+YP P++D
Sbjct: 388 NPVIQGKRFDARGDYVRGWVPELAEVEGSAIHEPW-------KLQGLDRAGLDYPDPVVD 440
Query: 470 LDLGRERLTQA 480
L R R +A
Sbjct: 441 LAEARARFERA 451
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 235/494 (47%), Gaps = 31/494 (6%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSYLG 63
+ W RRDLR+ DN LAAA A+ + ++ P+ + P RV+ +L+ L L
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVA--YLQGCLQELQ 63
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
Q + G+ L+L + + + + ++A V +N +P RD + L GI
Sbjct: 64 QRYQQAGSRLLLLQGDPQ-HLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGI 122
Query: 124 SVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGC 183
LL+ P +I G+ ++ + +W K Q Q +P + P LV +
Sbjct: 123 RAVQLWDQLLHSPDQILSGSGNPYSVYGPFW-KNWQAQPKPTPVATPTELVDLSPE-QLT 180
Query: 184 SIEDLGLEDESEKSSNALLGRGWS------PGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
+I L L SE + LG W PG + A L EF ++ + Y R
Sbjct: 181 AIAPLLL---SELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAE 237
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297
TS LSP L FG + +R+ ++ L + E + S+ + + + RE+ ++
Sbjct: 238 AGTSGLSPALKFGAIGIRQAWRAASAAHAL---SRSDEARNSIRVWQQELAWREFYQHAL 294
Query: 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
++FP + P S + FPW F AW Q +TGYP+VDA MR+L TGW+HNR +I
Sbjct: 295 YHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMI 354
Query: 358 VSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGS 417
V+SF K L++ WR G ++F L+D DL + GWQ+ + S D L R+ +P Q
Sbjct: 355 VASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPL-RIFNPASQAK 413
Query: 418 KFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERL 477
KFD Y+++WLPEL + HP D + G YP PI++ +L R++
Sbjct: 414 KFDATATYIKRWLPELRHV------HPKDLISGEITPIGRR---GYPAPIVNHNL-RQKQ 463
Query: 478 TQAIFKMWEMEAAD 491
+A++ + A+
Sbjct: 464 FKALYNQLKAAIAE 477
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 143/497 (28%), Positives = 236/497 (47%), Gaps = 59/497 (11%)
Query: 7 IVWFRRDLRIEDNPALAAAA----------RDGSVFPVYTWCPKEEGQFYPGRVSRWWLK 56
+ W RRDLR DN LAAAA G V V+ + + P RV+ ++
Sbjct: 3 LFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVA--FML 60
Query: 57 QSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKE 116
+L+ L + + LG++L++ + A L + + AT+VV+NH Y ++ RD +++
Sbjct: 61 DALAALRERYRDLGSDLIV-RHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDAGVRD 119
Query: 117 KLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
L G++ ++ + + P EI G ++ + +W K + P + P + A
Sbjct: 120 ALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEPADLAA 179
Query: 177 AGTIDGCS----IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ-HLLRYYKN 231
+ S +++LG + +A G + A +L F E + RY
Sbjct: 180 DTALADTSPLPSVQELGFAEPEAAVPDA--------GTAAARSLLDAFRESGDIYRYEDR 231
Query: 232 RQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLRE 291
R TS LSP+L FG + +R V++ + + + + +E+V F+ + RE
Sbjct: 232 RDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAK---SDADTDDERENVAAFIGQLAWRE 288
Query: 292 -YSRYLCFNFPFTHERPLLSNLKYFP----WHADLGNFKAWRQGRTGYPLVDAGMRELWA 346
Y++ L FN E N K + W D +AW+ G TGYP+VDAGMR+L A
Sbjct: 289 FYAQVLYFNQNVVSE-----NFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRA 343
Query: 347 TGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHEL 406
++HNR+R+IV++F K LL+ WR G +F + L D D D GWQ+ + + D
Sbjct: 344 EAYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPY 403
Query: 407 ERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLN---- 462
R+ +P QG ++DP+ +Y+ +++PEL +P + I H W EL L+
Sbjct: 404 FRVFNPMTQGERYDPDADYITEFVPELRDVPADAI-HSWH-----------ELSLSERRR 451
Query: 463 ----YPKPIIDLDLGRE 475
YP PI+D RE
Sbjct: 452 HAPEYPDPIVDHSQRRE 468
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 232/480 (48%), Gaps = 30/480 (6%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPG--RVSRW---WLKQSL 59
+VWFR DLR+ D+ L A + G ++ VY + P++ Q + G + W +L+QS+
Sbjct: 8 VLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSV 67
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L +SL+ +G +L L T + + I A + ++ L + ++ ++L
Sbjct: 68 QNLAESLQKVGNKL-LVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLT 126
Query: 120 ELGISVQSYNGDLLYEPWEI---YDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
LGI + Y G L P ++ + FT F +K ++ + P P L
Sbjct: 127 ILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEK-KKISIRPCFFAPSQLLPSP 185
Query: 177 AGTIDGCSI--EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
++ + E + +S A G G + G + ++ F L+ YK +
Sbjct: 186 NIKLELTAPPPEFFPQINFDHRSVLAFQG-GETAGLA---RLQDYFWHGDRLKDYKETRN 241
Query: 235 --LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREY 292
+G + +S SP+L G LS R ++Q + E+ +S + + + R++
Sbjct: 242 GMVGADYSSKFSPWLALGCLSPRFIYQ------EVKRYEQERVSNDSTHWLIFELLWRDF 295
Query: 293 SRYLC--FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
R++ + + LL+ K FPW D F+ WR G+TGYPLVDA MREL TG++
Sbjct: 296 FRFVAQKYGNKLFNRGGLLN--KNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFM 353
Query: 351 HNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLD 410
NR R V+SF K L + WRWG ++F L+D D+ + W Y +G D + +
Sbjct: 354 SNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFN 413
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
P+ Q ++DP+G Y+R WLPEL +P + IH PW K GV+LG++YP+P ++
Sbjct: 414 IPK-QSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNF 472
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 139/483 (28%), Positives = 215/483 (44%), Gaps = 31/483 (6%)
Query: 4 NRTIVWFRRDLRIEDNPALA-AAARDGSVFPVYTWCPKE--EGQFYP---GRVSRWWLKQ 57
+ +VWFR DLR+ DNP LA A A +V PVYT+ P E ++ P G + +Q
Sbjct: 2 DTAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQ 61
Query: 58 SLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEK 117
+++ L SL+ G +L L ++ + E A V R +
Sbjct: 62 AVADLRASLRDRGGDL-LVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASA 120
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
L + GI+++ LY P D+ T D + + A++ P +
Sbjct: 121 LDDAGIALRQRWTHTLYHP----DDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPETV 176
Query: 178 GTIDGCS------IEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV-EQHLLRYYK 230
T DG + +E LG+ + L G G S + + ++ E LR YK
Sbjct: 177 PTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEG---GESAGKRRVESYIWEGDHLREYK 233
Query: 231 NRQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG 288
+ LG + +S SP+L G LS R W+ + + E+ E + + +
Sbjct: 234 TTRNGLLGADYSSKFSPWLAAGCLSPR------WLHREVERYEDERVANEDTYWLVFELA 287
Query: 289 LREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATG 348
R++ ++ + T +P + W D F+ W G TG P VDA MREL TG
Sbjct: 288 WRDFFQFQFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTG 347
Query: 349 WIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELER 408
++ NR R V+SF VL + WRWG YF L+D D+ + W Y +G D +R
Sbjct: 348 YMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR--DR 405
Query: 409 LDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPII 468
Q ++D + EY+ WLPELA +P H PW + GVELG++YP+P++
Sbjct: 406 YFDVRSQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELGVDYPEPVV 465
Query: 469 DLD 471
D+D
Sbjct: 466 DID 468
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 134/504 (26%), Positives = 232/504 (46%), Gaps = 59/504 (11%)
Query: 4 NRTIVWFRRDLRIEDNPALAAAARDG--SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
N ++WFR DLR+ DN AL + R+ +V ++ PK+ + + + +++
Sbjct: 2 NVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIVA 61
Query: 62 LGQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L + + LG +++ L + ++E K T + FN Y+ RD IK+KL
Sbjct: 62 LKKKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKKL 121
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL-QMQMEPASILPPWRLVQAA 177
+ I + ++ +L P I + G + F + KC+ Q+Q+ S P Q
Sbjct: 122 KKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPK---PQNK 178
Query: 178 GTIDGCSIEDLG--LEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKL 235
D S++ EK + G + L F++ +Y +++
Sbjct: 179 NLHDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEK----LKFFIKYAFNKYNFDQEIF 234
Query: 236 GGNSTSLLSPYLHFGELS---------------VRKVFQCLWMKQILWAKEENFEGKESV 280
NSTS+LS +L G +S + K+ +C W+ ++LW
Sbjct: 235 ELNSTSMLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEECKWINELLW------------ 282
Query: 281 TFFLRAMGLREYSRYLCFNFPFTHERPLLSNLK-YFPWHADLGNFKAWRQGRTGYPLVDA 339
RE+ ++L + +P + L + + W +L W+QG TGYP++DA
Sbjct: 283 ---------REFYQHLLYFYPNIGQNQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDA 333
Query: 340 GMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGS 399
GMR+L GWI NR+R+I +SF VK LL+ WR G +YF L+D D + WQ+I+
Sbjct: 334 GMRQLKQLGWISNRLRMITASFLVKNLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASV 393
Query: 400 LPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL 459
D R+ +P +Q KFD +++R+++PEL+ + T IH+P D ++
Sbjct: 394 GTDSMPYFRIFNPMLQSKKFDINAKFIRKYIPELSNVSTYNIHNPCD------NNKTNKI 447
Query: 460 GLNYPKPIIDLDLGRERLTQAIFK 483
YP+PII+ +++ T +FK
Sbjct: 448 HSKYPQPIINYYHSKKK-TLLVFK 470
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 154/546 (28%), Positives = 243/546 (44%), Gaps = 44/546 (8%)
Query: 7 IVWFRRDLRIEDNPAL---AAAARDGSVFPVYTWCPK--EEGQFYPGRVSRWWLKQSLSY 61
+VWFR+ LR+ DNPAL ++PV+ P+ Q P S + +
Sbjct: 16 MVWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75
Query: 62 LGQSLKSLGAELVLFKTESTLAALLE-------CISAIK---ATKVVFNHLYDPVSLVRD 111
L +SL L A L + L + +A+K K+ F +P +L RD
Sbjct: 76 LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135
Query: 112 HSIKEKLVELGISVQSYNGDLLYEPWEIYDERG----HAFTTFDAYWDKCLQMQMEPASI 167
+ + GI V S L++P EI ++ G + +F A + + ME S
Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSE 195
Query: 168 LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
LPP + +E+LG D S++ + G G + A K + E + H
Sbjct: 196 LPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRG-----GETEALKRMRESL--HDKE 248
Query: 228 YYKNRQKLGGN-------STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV 280
+ +K G+ +T++LSPYL FG LS R + C+ + I + +++ S+
Sbjct: 249 WVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCI--QDIYRSTKKHTNPPVSL 306
Query: 281 TFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAG 340
T L R++ + F P + K PW + F AWR GRTGYP +DA
Sbjct: 307 TGQLL---WRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAI 363
Query: 341 MRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGS 399
M +L GW+H+ R V+ F + L + W G F L+D+D + W ++S S
Sbjct: 364 MIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCS 423
Query: 400 LPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL 459
++ R+ SP G K+DP G Y+R ++P L MP E+I+ PW AP ++ K A +
Sbjct: 424 -SFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCII 482
Query: 460 GLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAMDSNGTNEVVFDNSDRIQTPAIPQVV 519
G +YPKP++D + + KM A N +D + ++ NS R + A QV
Sbjct: 483 GKDYPKPVVDHAIASKECK----KMMGEAYASNRLDDDKPDKGKSSNSSRRKLSAGSQVT 538
Query: 520 LREKST 525
T
Sbjct: 539 PNSSKT 544
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 218/481 (45%), Gaps = 33/481 (6%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPK-----EEGQFYPGRVSRWWLKQSLSY 61
+VWFR DLR D+ A+ F V+ P+ E G G +L ++L+
Sbjct: 5 LVWFRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLTD 64
Query: 62 LGQSLKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L L+SLG EL++ + E+ L LL + AI A V F+H S+++
Sbjct: 65 LRSRLRSLGGELIVRVGRPETVLQHLLPSL-AIDA--VHFHHEPRTEEADTAESVQQLCD 121
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILP-PWR----LV 174
+ GI+ GD L P E+ E F + K ++ Q E S L P R L
Sbjct: 122 QHGIATHVAYGDTLIHPDELPFEIADTPELFTDF-RKEIEKQCEARSPLEEPIRIHGTLP 180
Query: 175 QAAGTIDGCSIEDLGLEDE--SEKSSNALLGRGWSPGWSNADKVLTEFV-EQHLLRYYKN 231
+ D ++E LGL ++ N G G + A + + E++ + LR YK
Sbjct: 181 EEVNAGDIPTLESLGLSTPPLDDRCLNQFTG-----GQNAAQQRMEEYIWNEDRLRVYKE 235
Query: 232 RQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGL 289
+ L N +S SP+L G LS R + + +EE + K S + + +
Sbjct: 236 TRNGMLHPNDSSKFSPWLAQGCLSPRMI-----ADHVRRYEEERVKNK-STYWMIFELLW 289
Query: 290 REYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGW 349
R+Y R++ T R W +D F+ W+ G TGYPLVDA MREL TG+
Sbjct: 290 RDYFRWISRKHGATLFRAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGY 349
Query: 350 IHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
+ NR R V+SF K L + WRWG ++F L+D D+ + W Y +G D R
Sbjct: 350 MSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGF-RF 408
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
+ Q +D +GEY + WLPEL + IH PW P + G LG YP PI+D
Sbjct: 409 FNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVD 468
Query: 470 L 470
L
Sbjct: 469 L 469
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 138/490 (28%), Positives = 227/490 (46%), Gaps = 40/490 (8%)
Query: 1 MGGNRTIVWFRRDLRIEDN-PALAAAARDGSVFPVYTWCPKEEGQF-----YPGRVSRWW 54
M +VW+R DLR+ D+ P +A ++ V +Y + P++ G+ G +
Sbjct: 1 MSTKTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARF 60
Query: 55 LKQSLSYLGQSLKSLGAELVLFKT--ESTLAALLECISAIKATKVVFNHLYDPVSLVRDH 112
L +S++ L +SL+ LG++L++ + E + AL +S ++ V ++ LV +
Sbjct: 61 LLESVADLRRSLRQLGSDLLVRRGHPEEVIPAL---VSELEIAAVHYHGEVTSEELVVER 117
Query: 113 SIKEKLVELGISVQSYNGDLLYEPWEI---YDERGHAFTTFDAYWDKCLQMQMEPASILP 169
++ L L + V+S+ G L P ++ + FT F ++ + +
Sbjct: 118 DLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPA- 176
Query: 170 PWRLVQAAGTIDGCSI---EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
+ +D I DLGLE L +G S ++ F ++ LL
Sbjct: 177 ---KLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGET--SGLARLEEYFWQKSLL 231
Query: 227 RYYKNRQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFL 284
+ YK + LG + +S S +L G LS R + + + + K +S + +
Sbjct: 232 KSYKQTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIK------NDSTYWLI 285
Query: 285 RAMGLREYSRYLCFNFPFTHERPLLSNLKY----FPWHADLGNFKAWRQGRTGYPLVDAG 340
+ R+Y R++ H L PW D F+ WR G+TG+PLVDA
Sbjct: 286 FELLWRDYFRFIAAK----HGDRLFYTAGLRGLDIPWKEDWERFELWRTGQTGFPLVDAN 341
Query: 341 MRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSL 400
MREL ATG++ NR R V+SF K L + W G ++F L+D D+ + W Y +G
Sbjct: 342 MRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVG 401
Query: 401 PDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELG 460
D R + Q +DP+G YV+ WLPELA +P +H PW P K GV LG
Sbjct: 402 NDARGF-RFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLG 460
Query: 461 LNYPKPIIDL 470
++YP+P++DL
Sbjct: 461 VDYPQPVVDL 470
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 192/426 (45%), Gaps = 40/426 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+VW R DLR+ D+PAL A G V + P + P R R W +++ L ++
Sbjct: 5 LVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNL-KTTPRR--RAWFLENVRALREAY 61
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
++ G L + + + E +KA V Y P RD ++E L +
Sbjct: 62 RARGGALWVLEG-LPWEKVPEAARRLKAKAVYALTSYTPYGRYRDAKVQEALPVPLHLLP 120
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIE 186
+ + + + A+ + + + L ++ + LP + E
Sbjct: 121 APH--------LLPPDLPRAYRVYTPFARRFLGVE----APLPAPEALPKGPEEGEIPRE 168
Query: 187 DLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPY 246
D GL AL G L F+E L RY + R +L G S LSPY
Sbjct: 169 DPGLPLPEPGEEAALAG-------------LRAFLEAKLPRYAEERDRLDGEGGSRLSPY 215
Query: 247 LHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHER 306
G LS R L A E G E ++ + R++S +L ++FP+ ER
Sbjct: 216 FALGVLSPR-----------LAAWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAER 264
Query: 307 PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVL 366
PL + PW D F+AW +GRTG PLVDA MREL ATG++ NR R+ + FAVK L
Sbjct: 265 PLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHL 324
Query: 367 LLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYV 426
LLPW+ + F LLD D ++ GWQ+ G D R+ +P +QG + DPEG ++
Sbjct: 325 LLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWL 384
Query: 427 RQWLPE 432
++W PE
Sbjct: 385 KRWAPE 390
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 134/520 (25%), Positives = 239/520 (45%), Gaps = 68/520 (13%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS-----VFPVYTWCPKEEGQFYPGRVSRWWLKQSLS 60
+ WF+ DLR+ DN +L A++ + +Y P++ + ++ ++L
Sbjct: 137 VVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLE 196
Query: 61 YLGQSLKSLGAEL---VLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEK 117
L L+ LG L + K + + E + + A+ + Y+ L R+ + +
Sbjct: 197 VLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKL 256
Query: 118 LVELGISVQSYNGDLLYE-----PWEIYDERGHAFTTFDAYW----------DKCLQMQM 162
L E G + D++++ P + G + + ++ +CL++
Sbjct: 257 LAE-GEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIEENPECLEIYE 315
Query: 163 EPASILPPWRLVQAAGTIDGCSI----EDLGLEDESEKSSNALLGRGWSPGWSNADKVLT 218
+P P + + + CSI E L D+ + ++L W G A K L
Sbjct: 316 KPGPNPPGTK--EKHENLFACSIPEAPEGKRLRDDEKARYHSL----WPAGEHEALKRLE 369
Query: 219 EFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE--- 275
+F ++ + +Y + R TS LS + G LS R + A++ N
Sbjct: 370 KFCDEAIGKYAERRNIPAMQGTSNLSVHFASGTLSARTAIRT--------ARDRNNTKKL 421
Query: 276 --GKESVTFFLRAMGLREYSR-------YLCFNFPFTHERPLLSNLKYFPWHADLGNFKA 326
G E + ++ + R++ + Y+C N PF +P SN++ W ++ +F A
Sbjct: 422 NGGNEGIQRWISEVAWRDFYKHVLVHWPYVCMNKPF---KPTYSNIE---WSYNVDHFHA 475
Query: 327 WRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADL 386
W QGRTG+P++DA MR++ +TG++HNR+R+IV+SF K LL+ WR G +YF + L+D D
Sbjct: 476 WTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDF 535
Query: 387 ECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT------EW 440
+ GW + + D R+ +P +Q KFDP+G+Y+R+W+ EL +P
Sbjct: 536 ASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGE 595
Query: 441 IHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480
IH P+ +K E G YP+PI++ R+R A
Sbjct: 596 IHDPYGRGSEKVKKKLEEKG--YPRPIVEHSGARDRALDA 633
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 136/505 (26%), Positives = 231/505 (45%), Gaps = 55/505 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAAAR-DGS------VFPVYTWCPKEEGQFYPGRVSRWWLKQS 58
I+WFR LR+ DNP+L A R DG+ ++P++ + + G G +L +S
Sbjct: 5 NILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLES 64
Query: 59 LSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L+ L + L+ +G +L +FK + + + + K+ F +P+ RD +I+
Sbjct: 65 LADLDRQLREIGGQLYVFKGNA-VNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLC 123
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAF-TTFDAYWDKCLQMQMEPASILPPWRLVQAA 177
+ + L++P +I G T+ + + P + P
Sbjct: 124 RMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAPSFEFVEF 183
Query: 178 GTIDGC-------------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
G+I S ED G+ E + + W G + A + L ++Q
Sbjct: 184 GSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPD---ISHQQWMGGETKALECLGHRLKQE 240
Query: 225 ----LLRYY---KNRQKLGGNSTSLLSPYLHFGELSVRKVFQCL--WMKQILWAKEENFE 275
L Y+ + + + TS+ S L FG LSVR + C+ +++ +
Sbjct: 241 EEAFLGGYFLPTQAKPEFLVPPTSM-SAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNP 299
Query: 276 GKESVTFFLRAMGLREYSRYLCFNFPFTHE---RPLLSNLKYFPWHADLGNFKAWRQGRT 332
G + +T + REY + + P E P+ N+ ++ D + W++GRT
Sbjct: 300 GGQHIT---GQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDD--SLDRWKEGRT 354
Query: 333 GYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLLPWRWGMKYFWDTLLDADLECDIL 391
G+P++DA MR+L A GW+H+ +R I ++F + L + W G+++F LLDAD
Sbjct: 355 GFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAG 414
Query: 392 GWQYISGSLPDGHELERL------DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPW 445
W ++S S E+L SP + DP+GEYVR++LPEL +PT ++H PW
Sbjct: 415 NWMWVSSS-----AFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPW 469
Query: 446 DAPPNVLKAAGVELGLNYPKPIIDL 470
AP +V K G +G +YP P+IDL
Sbjct: 470 KAPLDVQKECGCIVGRDYPAPMIDL 494
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 188/427 (44%), Gaps = 42/427 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSL 66
+VW R DLR+ D+PAL A G V + P + P R R W +++ L ++
Sbjct: 5 LVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNL-KTTPRR--RAWFLENVRALREAY 61
Query: 67 KSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126
++ G L + + + E +KA V + P RD ++E L V
Sbjct: 62 RARGGALWVLEG-LPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL-----PVP 115
Query: 127 SYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDG-CSI 185
+ + +T F + P + G +G
Sbjct: 116 LHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAAPPLPPPEA--------LPKGPEEGEIPR 167
Query: 186 EDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSP 245
ED GL AL G L F+E L RY + R +L G S LSP
Sbjct: 168 EDPGLPLPEPGEEAALAG-------------LRAFLEAKLPRYAEERDRLDGEGGSRLSP 214
Query: 246 YLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE 305
Y G LS R L A E G E ++ + R++S +L ++FP+ E
Sbjct: 215 YFALGVLSPR-----------LAAWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAE 263
Query: 306 RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365
RPL + FPW D F+AW +G+TG PLVDA MREL ATG++ NR R+ + FAVK
Sbjct: 264 RPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKH 323
Query: 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEY 425
LLLPW+ + F LLD D ++ GWQ+ G D R+ +P +QG + DPEG +
Sbjct: 324 LLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRW 383
Query: 426 VRQWLPE 432
+++W PE
Sbjct: 384 LKRWAPE 390
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 138/487 (28%), Positives = 220/487 (45%), Gaps = 36/487 (7%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G ++ WFR+ LR+ DNPAL AA R V VY P G ++RW +L QSL
Sbjct: 20 GASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVG-INRWRFLLQSLE 78
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+ L + L + + + T++ F + +P RD +I + E
Sbjct: 79 DLDTSLRKLNSRLFVVRGQPA-DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
G+ V + N LY+ I + G + F A + +++ +PA + ++
Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISR-MELPKKPAVAVSSQQMESC 196
Query: 177 AGTIDGC--------SIEDLGLEDESEKSSNALLGRG-WSPGWSNADKVLTEFVEQHLLR 227
I S+E+LG E LG W G + A L + +E+
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEG-------LGPAVWQGGETEALARLDKHLERKAWV 249
Query: 228 YYKNRQKLGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
R ++ NS + LSPYL FG LS R + LW L+ K + ++ F
Sbjct: 250 ANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW---DLYKKVKR-NSTPPLSLF 305
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
+ + RE+ N P PW + W +G+TG+P +DA M +
Sbjct: 306 GQLL-WREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQ 364
Query: 344 LWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPD 402
L GWIH+ R V+ F + L + W G++ F + LLDAD + W ++S S
Sbjct: 365 LRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA-F 423
Query: 403 GHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLN 462
+ P G + DP G+Y+R++LP+L P+ +I+ PW+AP +V KAA +G++
Sbjct: 424 FQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVD 483
Query: 463 YPKPIID 469
YP+PI++
Sbjct: 484 YPRPIVN 490
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 140/490 (28%), Positives = 220/490 (44%), Gaps = 40/490 (8%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSL 59
G R++ WFRR LR+ DNPAL AA R S+ +Y P G ++RW +L QSL
Sbjct: 10 GFCRSVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVG-INRWRFLLQSL 68
Query: 60 SYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV 119
L SL+ L + L + + + T T++ F + +P RD +I +
Sbjct: 69 EDLDNSLRKLNSRLFVVRGQPT-DVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAK 127
Query: 120 ELGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQ 175
E G+ V N LY I + G+ + F A + +++ +P S + ++
Sbjct: 128 EAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISR-MELPKKPVSSIVSQQMET 186
Query: 176 AAGTIDGC--------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLR 227
I S+E+LG ++ L W G + A L + +E+
Sbjct: 187 CKVDIQENHDDVYGVPSLEELGF------PTDGLAPAVWQGGETEALARLDKHLERKAWV 240
Query: 228 YYKNRQKLGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
R ++ NS + LSPYL FG LS R + LW E + K + T
Sbjct: 241 ANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW--------ELYKKVKRNSTPP 292
Query: 284 LRAMGL---REYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAG 340
L G RE+ N P PW + W +G+TG+P +DA
Sbjct: 293 LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAI 352
Query: 341 MRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGS 399
M +L GWIH+ R V+ F + L + W G++ F + LLDAD + W ++S S
Sbjct: 353 MTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCS 412
Query: 400 LPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL 459
+ P G + DP G+YV+++LP+L P+ +I+ PW+AP +V KAA +
Sbjct: 413 A-FFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCII 471
Query: 460 GLNYPKPIID 469
G++YPKP+++
Sbjct: 472 GVDYPKPMVN 481
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/477 (27%), Positives = 216/477 (45%), Gaps = 22/477 (4%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLSYLG 63
++ WFR+ LR+ DNPAL AA R V VY P G ++RW +L QSL L
Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVG-INRWRFLLQSLEDLD 82
Query: 64 QSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGI 123
SL+ L + L + + + T++ F + +P RD +I + E G+
Sbjct: 83 TSLRKLNSRLFVVRGQPA-DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGV 141
Query: 124 SVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
V + N LY+ I + G + F A + +++ +P ++ ++
Sbjct: 142 EVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISR-MELPKKPVGLVTSQQMESCRAE 200
Query: 180 IDGCSIEDLGLEDESEKS--SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGG 237
I E G+ E + L W G + A L + +E+ R ++
Sbjct: 201 IQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNA 260
Query: 238 NST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYS 293
NS + LSPYL FG LS R + LW L+ K + ++ F + + RE+
Sbjct: 261 NSLLASPTGLSPYLRFGCLSCRLFYYRLW---DLYKKVKR-NSTPPLSLFGQLL-WREFF 315
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
N P PW + W +G+TG+P +DA M +L GWIH+
Sbjct: 316 YTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHL 375
Query: 354 IRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSP 412
R V+ F + L + W G++ F + LLDAD + W ++S S + P
Sbjct: 376 ARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA-FFQQFFHCYCP 434
Query: 413 EIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
G + DP G+Y+R++LP+L P+ +I+ PW+AP ++ KAA +G++YP+PI++
Sbjct: 435 VGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVN 491
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 137/487 (28%), Positives = 218/487 (44%), Gaps = 36/487 (7%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G ++ WFR+ LR+ DNPAL AA R V VY P G ++RW +L QSL
Sbjct: 20 GASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVG-INRWRFLLQSLE 78
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L SL+ L + L + + + T++ F + +P RD +I + E
Sbjct: 79 DLDTSLRKLNSRLFVVRGQPA-DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 137
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
G+ V + N LY+ I + G + F A + +++ +P + +
Sbjct: 138 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISR-MELPKKPVGAVSSQHMENC 196
Query: 177 AGTIDGC--------SIEDLGLEDESEKSSNALLGRG-WSPGWSNADKVLTEFVEQHLLR 227
I S+E+LG E LG W G + A L + +E+
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEG-------LGPAVWQGGETEALVRLDKHLERKAWV 249
Query: 228 YYKNRQKLGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFF 283
R ++ NS + LSPYL FG LS R + LW L+ K + ++ F
Sbjct: 250 ANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW---DLYRKVKR-NSTPPLSLF 305
Query: 284 LRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRE 343
+ + RE+ N P PW + W +G+TG+P +DA M +
Sbjct: 306 GQLL-WREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQ 364
Query: 344 LWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPD 402
L GWIH+ R V+ F + L + W G++ F + LLDAD + W ++S S
Sbjct: 365 LRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA-F 423
Query: 403 GHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLN 462
+ P G + DP G+Y+R++LP+L P+ +I+ PW+AP +V KAA +G++
Sbjct: 424 FQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAANCIIGVD 483
Query: 463 YPKPIID 469
YP+PI++
Sbjct: 484 YPRPIVN 490
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 134/521 (25%), Positives = 231/521 (44%), Gaps = 56/521 (10%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGSV---------FPVYTWCPKEEGQFYPGRVSRWWLKQ 57
I+WFR LR+ DNP+L A + V FP++ + + G G +L +
Sbjct: 6 ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLLE 65
Query: 58 SLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEK 117
SL+ L + + LG +L++F+ +S + L + K+ + +P+ RD ++ +
Sbjct: 66 SLADLDRQFRDLGGQLLVFRGDS-VTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKL 124
Query: 118 LVELGISVQSYNGDLLYEPWEIYDERGHAF-TTFDAYWDKCLQMQMEPASILPPWRLVQA 176
+ + L+ P E+ G T+ + + P + P
Sbjct: 125 CRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDPPRPVGAPNFEYVE 184
Query: 177 AGTIDGCSIEDLGLEDES--------EKSSNALLG-RGWSPGWSNADKVLTEFV--EQHL 225
G + +L L + NA + + W G + A + L + E+
Sbjct: 185 FGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEALGARLKQEEEA 244
Query: 226 LR--YY---KNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEEN-----FE 275
R YY + + ++ G +TS+ S L FG LSVR + C+ L+AK ++ +
Sbjct: 245 FREGYYLPTQAKPEILGPATSM-SAALRFGCLSVRMFYWCV---HDLFAKVQSNSQFKYP 300
Query: 276 GKESVTFFLRAMGLREYSRYLCFNFPFTHE---RPLLSNLKYFPWHADLGNFKAWRQGRT 332
G +T + REY + P E P+ N+ ++ D + W++GRT
Sbjct: 301 GGHHIT---GQLIWREYFYTMSVQNPHYGEMERNPICLNIPWYKPEDD--SLTRWKEGRT 355
Query: 333 GYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDIL 391
G+P++DA MR+L A GW+H+ +R I ++F + L L W G+++F LLDAD
Sbjct: 356 GFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAG 415
Query: 392 GWQYISGSLPDGHELERL------DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPW 445
W ++S S ERL P + DP+G+YV+++LPELA P +++H PW
Sbjct: 416 NWMWVSSS-----AFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHEPW 470
Query: 446 DAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486
A G +G YP P++DL + +R + + E
Sbjct: 471 KASREQQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLRE 511
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 149/506 (29%), Positives = 221/506 (43%), Gaps = 67/506 (13%)
Query: 7 IVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEEGQFY------PGRVSRWWLKQSL 59
IVWFR DLR+ DN AL A ++ PVY P+ G + G + ++ + L
Sbjct: 81 IVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECL 140
Query: 60 SYLGQSLKSLGAELVL---------------FKTESTLAALLECISAIKATKVVFNHLYD 104
+ L ++L G +L++ +K + A C +K K+V +L
Sbjct: 141 NDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQK 200
Query: 105 PVS-----LVRD-HSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL 158
VS + D S +EL Y+ D L E + F Y K
Sbjct: 201 LVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKVR 260
Query: 159 QMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDES-EKSSNALLGRGWSPGWSNADKVL 217
P S PP V G + + +LGL+ E K N + G + G +V
Sbjct: 261 NCTKLPTSFGPPPE-VGDWGHVP--QVSELGLQQEKVSKGMNFVGGESAALG-----RVH 312
Query: 218 TEFVEQHLLRYYKNRQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE 275
F ++ LL+ YK + LG + ++ SP+L G LS R +++ ++ ++E
Sbjct: 313 DYFWKKDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRFIYE-----EVKRYEKERLS 367
Query: 276 GKESVTFFLRAMGLREYSRYLCF---NFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRT 332
+S + L + R+Y R+L N F P N+ W D F AWR+G+T
Sbjct: 368 -NDSTYWVLFELIWRDYFRFLSIKLANLLFQAGGPQKVNIN---WSQDQTMFDAWRRGQT 423
Query: 333 GYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILG 392
GYPL+DA M+EL ATG++ NR R IV SF V+ + + WR G ++F LLD D +
Sbjct: 424 GYPLIDANMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 483
Query: 393 WQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVL 452
W Y +G D E P+ Q +DPEGE+V WLPEL +P E H P
Sbjct: 484 WTYGAGVGNDPREDRYFSIPK-QAQNYDPEGEFVAYWLPELRALPREKRHSP-------- 534
Query: 453 KAAGVELGLNYPKPIIDLDLGRERLT 478
G+ Y PI+ L G + T
Sbjct: 535 -------GMMYLNPIVALKHGYTKKT 553
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/480 (27%), Positives = 208/480 (43%), Gaps = 22/480 (4%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL R +V VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L + + + K+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLFVIRGQPA-DVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
G+ V LY+ +I + G + F + ++M P + P + +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEM-PVETITPEVMQKC 178
Query: 177 AGTIDGCSIEDLGLEDESEKS--SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ E G+ E ++ L W G + A L +E+ R +
Sbjct: 179 TTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPR 238
Query: 235 LGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+ NS + LSPYL FG LS R + K K+ ++ + + + R
Sbjct: 239 MNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL-WR 293
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
E+ N P + PW + W +GRTG+P +DA M +L GWI
Sbjct: 294 EFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353
Query: 351 HNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
H+ R V+ F + L + W GMK F + LLDAD + W ++S S +
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCS-SFFQQFFHC 412
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P G + DP G+Y+R++LP L P ++I+ PW+AP +V KAA +G+NYPKP+++
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVN 472
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 132/485 (27%), Positives = 209/485 (43%), Gaps = 32/485 (6%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL R +V VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L + + + K+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLFVIRGQPA-DVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
G+ V LY+ +I + G + F + ++M +I P
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCT 179
Query: 177 AGTIDGC-------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYY 229
D S+E+LG + + S+ W G + A L +E+
Sbjct: 180 TPVFDDHDEKYGVPSLEELGFDTDGLPSAV------WPGGETEALTRLERHLERKASVAN 233
Query: 230 KNRQKLGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
R ++ NS + LSPYL FG LS R + K K+ ++ + +
Sbjct: 234 FERPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQ 289
Query: 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELW 345
+ RE+ N P + PW + W +GRTG+P +DA M +L
Sbjct: 290 LL-WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLR 348
Query: 346 ATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
GWIH+ R V+ F + L + W GMK F + LLDAD + W ++S S
Sbjct: 349 QEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCS-SFFQ 407
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
+ P G + DP G+Y+R++LP L P ++I+ PW+AP ++ KAA +G+NYP
Sbjct: 408 QFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYP 467
Query: 465 KPIID 469
KP+++
Sbjct: 468 KPMVN 472
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 214/490 (43%), Gaps = 42/490 (8%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL + ++ VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L + + + TK+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATE 119
Query: 121 LGISVQSYNGDLLYEPWEIYD-ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ V LY+ +I + G T+ + + L +MEP I P + +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF--QTLISKMEPLEI--PVETITSE-V 174
Query: 180 IDGC---------------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
I+ C S+E+LG + + S+ W G + A L +E+
Sbjct: 175 IEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAV------WPGGETEALTRLERHLERK 228
Query: 225 LLRYYKNRQKLGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV 280
R ++ NS + LSPYL FG LS R + K K+ +
Sbjct: 229 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKRNSSPPL 284
Query: 281 TFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAG 340
+ + + + RE+ N P + PW + W +GRTG+P +DA
Sbjct: 285 SLYGQLL-WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAI 343
Query: 341 MRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGS 399
M +L GWIH+ R V+ F + L + W GMK F + LLDAD + W ++S S
Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS 403
Query: 400 LPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL 459
+ P G + DP G+Y+R++LP L P ++I+ PW+AP + K A +
Sbjct: 404 -SFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLI 462
Query: 460 GLNYPKPIID 469
G+NYPKP+++
Sbjct: 463 GINYPKPMVN 472
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 214/490 (43%), Gaps = 42/490 (8%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL + ++ VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L++ + + TK+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLLVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATE 119
Query: 121 LGISVQSYNGDLLYEPWEIYD-ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ V LY+ +I + G T+ + + L +MEP I P + +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF--QTLISKMEPLEI--PVETITSE-V 174
Query: 180 IDGC---------------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
I+ C S+E+LG + + S+ W G + A L +E+
Sbjct: 175 IEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAV------WPGGETEALTRLERHLERR 228
Query: 225 LLRYYKNRQKLGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV 280
R ++ NS + LSPYL FG LS R + K K+ +
Sbjct: 229 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPL 284
Query: 281 TFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAG 340
+ + + + RE+ N P + PW + W +GRTG+P +DA
Sbjct: 285 SLYGQLL-WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAI 343
Query: 341 MRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGS 399
M +L GWIH+ R V+ F L + W GMK F + LLDAD + W ++S S
Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS 403
Query: 400 LPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL 459
+ P G + DP G+Y+R++LP L P ++I+ PW+AP + K A +
Sbjct: 404 -SFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLI 462
Query: 460 GLNYPKPIID 469
G+NYPKP+++
Sbjct: 463 GVNYPKPMVN 472
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 214/490 (43%), Gaps = 42/490 (8%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL + ++ VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L + + + TK+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATE 119
Query: 121 LGISVQSYNGDLLYEPWEIYD-ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ V LY+ +I + G T+ + + L +MEP I P + +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF--QTLISKMEPLEI--PVETITSE-V 174
Query: 180 IDGC---------------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
I+ C S+E+LG + + S+ W G + A L +E+
Sbjct: 175 IEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAV------WPGGETEALTRLERHLERK 228
Query: 225 LLRYYKNRQKLGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV 280
R ++ NS + LSPYL FG LS R + K K+ +
Sbjct: 229 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPL 284
Query: 281 TFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAG 340
+ + + + RE+ N P + PW + W +GRTG+P +DA
Sbjct: 285 SLYGQLL-WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAI 343
Query: 341 MRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGS 399
M +L GWIH+ R V+ F + L + W GMK F + LLDAD + W ++S S
Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS 403
Query: 400 LPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVEL 459
+ P G + DP G+Y+R++LP L P ++I+ PW+AP + K A +
Sbjct: 404 -SFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLI 462
Query: 460 GLNYPKPIID 469
G+NYPKP+++
Sbjct: 463 GVNYPKPMVN 472
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 208/480 (43%), Gaps = 22/480 (4%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL + +V VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L + + + K+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLFVIRGQPA-DVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
G+ V LY+ +I + G + F + ++M P + P + +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEM-PVETITPEVMKKC 178
Query: 177 AGTIDGCSIEDLGLEDESEKS--SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ E G+ E ++ L W G + A L +E+ R +
Sbjct: 179 TTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPR 238
Query: 235 LGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+ NS + LSPYL FG LS R + K K+ ++ + + + R
Sbjct: 239 MNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL-WR 293
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
E+ N P + PW + W +GRTG+P +DA M +L GWI
Sbjct: 294 EFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353
Query: 351 HNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
H+ R V+ F + L + W GMK F + LLDAD + W ++S S +
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCS-SFFQQFFHC 412
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P G + DP G+Y+R++LP L P ++I+ PW+AP ++ KAA +G+NYPKP+++
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 207/480 (43%), Gaps = 22/480 (4%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL + ++ VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L + + + TK+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATE 119
Query: 121 LGISVQSYNGDLLYEPWEIYDERGH----AFTTFDAYWDKCLQMQMEPASILPPWRLVQA 176
G+ V LY+ +I + G + F K ++M PA + + +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEM-PADTITSDVIGKC 178
Query: 177 AGTIDGCSIEDLGLEDESEKS--SNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQK 234
+ E G+ E ++ L W G + A L +E+ R +
Sbjct: 179 TTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPR 238
Query: 235 LGGNST----SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR 290
+ NS + LSPYL FG LS R + K K+ ++ + + + R
Sbjct: 239 MNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL-WR 293
Query: 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWI 350
E+ N P + PW + W +GRTG+P +DA M +L GWI
Sbjct: 294 EFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353
Query: 351 HNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL 409
H+ R V+ F + L + W GMK F + LLDAD + W ++S S +
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS-SFFQQFFHC 412
Query: 410 DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469
P G + DP G+Y+R++LP L P ++I+ PW+AP + K A +G+NYPKP+++
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVN 472
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 215/494 (43%), Gaps = 50/494 (10%)
Query: 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRW-WLKQSLS 60
G + WFR+ LR+ DNPAL + ++ VY P G G ++RW +L Q L
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLE 60
Query: 61 YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120
L +L+ L + L + + + TK+ + +P RD +IK+ E
Sbjct: 61 DLDANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATE 119
Query: 121 LGISVQSYNGDLLYEPWEIYD-ERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAGT 179
G+ V LY+ +I + G T+ + + L +MEP + P + +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF--QTLVSKMEPLEM--PADTI-TSDV 174
Query: 180 IDGC---------------SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQH 224
I C S+E+LG + + S+ W + +E+H
Sbjct: 175 IGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAV----------WPGGETEALTRLERH 224
Query: 225 LLR--YYKNRQKLGGNSTSLL------SPYLHFGELSVRKVFQCLWMKQILWAKEENFEG 276
L R + N ++ N+ SLL SPYL FG LS R + K K+
Sbjct: 225 LERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNS 280
Query: 277 KESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPL 336
++ + + + RE+ N P + PW + W +GRTG+P
Sbjct: 281 SPPLSLYGQLL-WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPW 339
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQY 395
+DA M +L GWIH+ R V+ F + L + W GMK F + LLDAD + W +
Sbjct: 340 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW 399
Query: 396 ISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAA 455
+S S + P G + DP G+Y+R++LP L P ++I+ PW+AP + K A
Sbjct: 400 LSCS-SFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVA 458
Query: 456 GVELGLNYPKPIID 469
+G+NYPKP+++
Sbjct: 459 KCLIGVNYPKPMVN 472
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 225/490 (45%), Gaps = 39/490 (7%)
Query: 1 MGGNRTIV-WFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKE-EGQFY-----PGRVSR 52
M +RT++ R DLR+ DN A R+ + P+Y + P+ +G ++ G
Sbjct: 1 MSASRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60
Query: 53 WWLKQSLSYLGQSLKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYDPVSLVR 110
+L S+ L LK G+ L++ K E + L++ + ++ + V F+
Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSV--STVAFHEEVASEEKSV 118
Query: 111 DHSIKEKLVELGISVQSYNGDLLYE----PWEIYDERGHAFTTFDAYWDKCLQMQMEPAS 166
+ +KE + + VQ++ G LY P+ +T F + Q ++ P
Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEA--QGRVRPVL 176
Query: 167 ILPPWRLVQAAGTIDGC--SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV-EQ 223
P +G +G + + LG + + +A RG G + A L + +
Sbjct: 177 STPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRG---GETEALARLKHYFWDT 233
Query: 224 HLLRYYKNRQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVT 281
+ + YK + +G + ++ SP+L G +S R +++ QI + E +S
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYE-----QIKKYEVER-TANQSTY 287
Query: 282 FFLRAMGLREYSRYLCFNFPFTHERPLLSNL---KYFPWHADLGNFKAWRQGRTGYPLVD 338
+ + + R+Y +++ + R N K+ PW+ D+ F AW++GRTG P VD
Sbjct: 288 WVIFELLWRDYFKFVALKYG---NRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVD 344
Query: 339 AGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISG 398
A MREL TG++ NR R V+SF K L L WR G ++F L+D D+ + W Y +G
Sbjct: 345 ANMRELALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAG 404
Query: 399 SLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVE 458
D E + + + QG +D G+YVRQW+PEL + +H PW + L A V
Sbjct: 405 IGNDPRENRKFNMIK-QGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVS 463
Query: 459 LGLNYPKPII 468
L YP PII
Sbjct: 464 LNQTYPCPII 473
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 138/505 (27%), Positives = 224/505 (44%), Gaps = 40/505 (7%)
Query: 7 IVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEE-GQFY-------PGRVSRWWLKQ 57
I R DLR+ DN L A R+ + P+Y + P+ G Y P R+ +L +
Sbjct: 9 ICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLK--FLLE 66
Query: 58 SLSYLGQSLKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIK 115
S+ L +LK G+ L+L K E + L++ + + A + + + + ++K
Sbjct: 67 SVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDV--ESAVK 124
Query: 116 EKLVELGISVQSYNGDLLYE----PWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPW 171
+ LGI Q++ G LY P+ +T F + Q ++ P +P
Sbjct: 125 QACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVET--QGKVRPTFQMPDK 182
Query: 172 RLVQAAGTIDGC--SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV-EQHLLRY 228
+G +G S ED +D A G G S A + L + E +L+
Sbjct: 183 LKPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSG---GESQALQRLEHYFWETNLVAS 239
Query: 229 YKNRQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286
YK+ + +G + ++ +P+L G +S R +++ + E+ +S + +
Sbjct: 240 YKDTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIG------KYEKERTANQSTYWVIFE 293
Query: 287 MGLREYSRYLCFNFPFTHERPLLSNL--KYFPWHADLGNFKAWRQGRTGYPLVDAGMREL 344
+ R+Y R++ + L L K PW D F AW++GRTG P VDA MREL
Sbjct: 294 LLWRDYFRFVALKY--GRRIFFLRGLQDKDIPWKRDPKLFDAWKEGRTGVPFVDANMREL 351
Query: 345 WATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGH 404
TG++ NR R V+SF K L + WR G ++F L+D D+ + W Y +G D
Sbjct: 352 AMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPR 411
Query: 405 ELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYP 464
E + + + QG +D G+Y+R W+PEL ++ H PW L A + LG YP
Sbjct: 412 ENRKFNMIK-QGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYP 470
Query: 465 KPIIDLDLGRERLTQAIFKMWEMEA 489
PI+ + Q WE A
Sbjct: 471 YPIVMAPEWSRHINQKPAGSWEKSA 495
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 214/472 (45%), Gaps = 56/472 (11%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPK--EEGQFY----PGRVSRWW 54
G TI+WFR DLR+ DN AL A + ++ PVY P+ F+ G + +
Sbjct: 82 GKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGF 141
Query: 55 LKQSLSYLGQSLKSLGAELVL--FKTESTLAALLECISAIKATKVVFNH---LYDPVSLV 109
L + L L ++L G L++ K E L +L + A + VF H + V +
Sbjct: 142 LMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGA----RTVFAHKETCSEEVDVE 197
Query: 110 RDHSIKEKLVELGISVQSYNGDLLYE----PWEIYDERGHAFTTF-DAYWDKC------- 157
R + K V ++ G +Y P++++D +T F + KC
Sbjct: 198 RLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFD-LPDVYTQFRKSVEAKCSIRSSTR 256
Query: 158 LQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVL 217
+ + + P + W D ++E LG+E + +G G S G +V
Sbjct: 257 IPLSLGPTPSVDDWG--------DVPTLEKLGVEPQEVTRGMRFVG-GESAG---VGRVF 304
Query: 218 TEFVEQHLLRYYKNRQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE 275
F ++ LL+ YK + LG + ++ SP+L FG +S R +++ + E+
Sbjct: 305 EYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYE------EVQRYEKERV 358
Query: 276 GKESVTFFLRAMGLREYSRYL---CFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRT 332
S + L + R+Y R+L C N F P K W D F++WR +T
Sbjct: 359 ANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGK---WSQDQKLFESWRDAKT 415
Query: 333 GYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILG 392
GYPL+DA M+EL TG++ NR R IV SF V+ + L WR G ++F LLD D +
Sbjct: 416 GYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGN 475
Query: 393 WQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHP 444
W Y +G D E P+ Q +DPEGEYV WL +L R+P E H P
Sbjct: 476 WTYGAGVGNDPREDRYFSIPK-QAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 526
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 133/512 (25%), Positives = 212/512 (41%), Gaps = 79/512 (15%)
Query: 9 WFRRDLRIEDNPALAAAA-------RDGSVFPVYTWCPKEEGQFYPGRVSRW---WLKQS 58
WFR DLR+ DN L + + + +Y E + S W ++ +
Sbjct: 80 WFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMGA 139
Query: 59 LSYLGQSLKSLGAELVL--FKT-ESTLAALLECISAIK----------ATKVVFNHLYDP 105
L L QSL L L+L F T +STL+ E + K T + N Y
Sbjct: 140 LKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQT 199
Query: 106 VSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK--------- 156
L RD + E + + ++ Y+ + P I +RG ++ F ++ K
Sbjct: 200 DELYRDIRLLEN-EDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYK 258
Query: 157 ------CLQMQMEPASI-----LPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRG 205
C +EP L P++ + L D SE+ A L R
Sbjct: 259 KSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEE---AALSR- 314
Query: 206 WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQ 265
L +F+ +Y + L TS LS Y+ G +S R + +
Sbjct: 315 -----------LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSC 363
Query: 266 ILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHE-RPLLSNLKYFPWHADLGNF 324
+ + S F++ + R++ R+ N+P+T P + W + F
Sbjct: 364 NGQIMSKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAF 423
Query: 325 KAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDA 384
+ W G TG P+VDA MR+L TG+I+NR R+I +SF K LL+ WRWG ++F L+D
Sbjct: 424 EKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDG 483
Query: 385 DLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHP 444
D ++ GW + S + D R+ + +IQ K+DP+ +V+QW+PEL
Sbjct: 484 DSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELI---------- 533
Query: 445 WDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476
++ + NYPKP++DL RER
Sbjct: 534 ---------SSENKRPENYPKPLVDLKHSRER 556
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 133/510 (26%), Positives = 212/510 (41%), Gaps = 51/510 (10%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDG----SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
++WFR LR+ DNPAL AA D ++ PV+ + + G G +L SL
Sbjct: 7 NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66
Query: 62 LGQSLKSLG---AELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
+ L++ L++F+ E ++ ++ +P+ RD SI+
Sbjct: 67 IDDQLQAATDGRGRLLVFEGEPAYI-FRRLHEQVRLHRICIEQDCEPIWNERDESIRSLC 125
Query: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEPASILPPWRLVQAAG 178
EL I L++P + + G + +Q+ P RL A
Sbjct: 126 RELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATF 185
Query: 179 T-IDGCSIEDLGLEDESEKSSNA---------LLGRGWSPGWSNADKVLTEF--VEQHLL 226
+D L L ++ + L W G + A +L E VEQH
Sbjct: 186 VELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAF 245
Query: 227 R--YYKNRQKLGG--NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTF 282
+Y Q L +S +S +L FG LSVR+ + W L+ +N + + V
Sbjct: 246 ERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFY---WSVHDLF---KNVQLRACVRG 299
Query: 283 FLRAMGL--------REYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNF-KAWRQGRTG 333
G REY + N P PW N ++WR G+TG
Sbjct: 300 VQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTG 359
Query: 334 YPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLLPWRWGMKYFWDTLLDADLECDILG 392
+PL+D MR+L A GW+H+ +R V++F + L W G+++F LLDAD
Sbjct: 360 FPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGN 419
Query: 393 WQYISGSLPDGHELERL------DSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWD 446
W ++S S ERL P + DP+G Y++Q++PEL +P E++H PW
Sbjct: 420 WMWVSSS-----AFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWR 474
Query: 447 APPNVLKAAGVELGLNYPKPIIDLDLGRER 476
+ +G++YP+ IIDL + +R
Sbjct: 475 MSAEQQEQYECLIGVHYPERIIDLSMAVKR 504
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 143/538 (26%), Positives = 217/538 (40%), Gaps = 77/538 (14%)
Query: 6 TIVWFRRDLRIEDNPALAAAARDGS----VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSY 61
++WFR LR+ DNPAL AA + + PV+ + + G G +L SL
Sbjct: 7 NVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSLQD 66
Query: 62 LGQSLKSLG---AELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKL 118
L + L+S L +F+ E TL ++ K+ +P+ RD S +
Sbjct: 67 LDEQLQSATEGRGRLFVFEGEPTLI-FRRLHEQVRLHKICAELDCEPIWNERDESARLLC 125
Query: 119 VELGISVQSYNGDLLYEPWEIYDERG-----------HAFT--------TFDAYWDKCLQ 159
ELGI L++P + + G H DA+ +
Sbjct: 126 RELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAIDAHINDATF 185
Query: 160 MQMEPASILPPWRLVQAAGTIDGC-SIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLT 218
+Q+ P L Q G D + E + ++ L W G + A +L
Sbjct: 186 IQLAP-------ELRQHLGCFDQVPNPEHFNIYSDN---MGFLAKINWRGGETQALALLE 235
Query: 219 EF--VEQHLLR--YYKNRQKLGG--NSTSLLSPYLHFGELSVRKVFQCLWMKQILW---- 268
E VE++ YY Q + +S +L FG LSVR+ + W L+
Sbjct: 236 ERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFY---WSVHDLFENVQ 292
Query: 269 ----AKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPW-HADLGN 323
+ EG +T + REY + N P PW D
Sbjct: 293 LAACVRGVQIEGGAHIT---GQLIWREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDENL 349
Query: 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLLPWRWGMKYFWDTLL 382
+ WR G+TG+PL+D MR+L A GW+H+ +R V++F + L W G+K+F LL
Sbjct: 350 LQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLL 409
Query: 383 DADLECDILGWQYISGSLPDGHELERL------DSPEIQGSKFDPEGEYVRQWLPELARM 436
DAD W ++S S ERL P + DPEG Y+R+++PEL +
Sbjct: 410 DADWSVCAGNWMWVSSS-----AFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNL 464
Query: 437 PTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAADNAM 494
P E+IH PW +G++YP+ IIDL +R M M A N++
Sbjct: 465 PKEYIHEPWRLSAEQQVKFECLIGVHYPERIIDLSKAVKR------NMMAMTALRNSL 516
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 216/486 (44%), Gaps = 66/486 (13%)
Query: 2 GGNRTIVWFRRDLRIEDNPALAAA-ARDGSVFPVYTWCPKEE-------GQFYPGRVSRW 53
GG IVWFR DLR+ DN A+ A A +V PVY P+ G G +
Sbjct: 82 GGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQ 141
Query: 54 WLKQSLSYLGQSLKSLGAELVLF--KTESTLAALLECISAIKATKVVFNHLYD-PVSLVR 110
+L + L L ++L G +L++ K E L ++ + ++A V+ H L+
Sbjct: 142 FLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTA----HTVYAHKETCSEELLV 197
Query: 111 DHSIKEKLVELGI--------------SVQSYNGDLLYE----PW------EIYDERGHA 146
+H +++ L ++ I +Q G LY P+ ++Y + A
Sbjct: 198 EHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRKA 257
Query: 147 FTTFDAYWDKCLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLE-DESEKSSNALLGRG 205
+ + + + GT+ ++E LGL ++EK + + G
Sbjct: 258 VESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVP--TLESLGLSMTKAEKGMHFVGGES 315
Query: 206 WSPGWSNADKVLTEFVEQHLLRYYKNRQK--LGGNSTSLLSPYLHFGELSVRKVFQCLWM 263
+ G +V F ++ L+ YK + LG + ++ SP+L G LS R + C +
Sbjct: 316 AALG-----RVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYI--CEEV 368
Query: 264 KQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFN-----FPFTHERPLLSNLKYFPWH 318
K+ E+ +S + L + R+Y R++ F R + S W
Sbjct: 369 KRY----EKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGGPRNVESK-----WS 419
Query: 319 ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFW 378
D F++WR GRTGYPL+DA M+EL ATG++ NR R IV SF V+ + + WR G ++F
Sbjct: 420 QDQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFE 479
Query: 379 DTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT 438
LLD D + W Y +G D E P+ Q +DP+GEYV WLPEL +
Sbjct: 480 TCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPK-QAKTYDPDGEYVAYWLPELRSIAK 538
Query: 439 EWIHHP 444
E + P
Sbjct: 539 ERRNFP 544
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 18/240 (7%)
Query: 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAK-EENFEGKESVTFFLRAMGL-REYSRYLCF 298
S +S L FG LSVR + W L+A+ + N + K + + REY +
Sbjct: 217 SSMSAALRFGCLSVRMFY---WCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSV 273
Query: 299 NFPFTHERPLLSNLKYFPWH-ADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVI 357
+ P L PW+ A + W++GRTG+PL+DA MR+L A GW+H+ +R I
Sbjct: 274 HNPHYAVMELNPICLNIPWYEAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNI 333
Query: 358 VSSFAVKV-LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERL------D 410
++F + L + W G+++F LLDAD W ++S S E+L
Sbjct: 334 TATFLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSS-----AFEKLLDSSSCT 388
Query: 411 SPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDL 470
SP + DP+GEYV+++LPEL + P ++H PW APP + + G +G +YP P+++L
Sbjct: 389 SPVALARRLDPKGEYVKRYLPELEKFPALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNL 448
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 137/515 (26%), Positives = 223/515 (43%), Gaps = 69/515 (13%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAA------RDGSVFPVYTW-----CPKEEG--QFYP 47
MG R ++WFR DLR+ DN +A AA D V PVY + P + G +F
Sbjct: 1 MGRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGA 60
Query: 48 GRVSRWWLKQSLSYLGQSLKSLGAELVL-------FKTESTLAALLECISAIKATKVVFN 100
GR + + + L SL++LG++L++ E TL + + T+V
Sbjct: 61 GRGK--FTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSE 118
Query: 101 HLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYE----PWEI---YDERGHAFTTF-DA 152
V++ R + + +++ + G LY P+++ + FT F +
Sbjct: 119 ETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNK 178
Query: 153 YWDKCLQMQMEPASILPPWRLVQAAGTIDGC----SIEDLGLE------DESEKSSNALL 202
KC + PA L +++G DL D ++ + L
Sbjct: 179 VESKCKVRDVIPAPTAN--ELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLD 236
Query: 203 GRG---WSPGWSNADKVLTEFV--EQHLLRYYKNRQK-LGGNSTSLLSPYLHFGELSVRK 256
R + G SNA + ++ L Y++ R LGG+ ++ L+P+L G +S R
Sbjct: 237 ERSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRH 296
Query: 257 VFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL----SNL 312
V + +I + E E K S + + + R++ ++ F H + +
Sbjct: 297 V-----VSEIRRYESERVENK-STYWVIFELIWRDFFKF----FALKHGNKIFHLDGTAG 346
Query: 313 KYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRW 372
+ W D KAW+ G TGYPL+DA MREL ATG++ NR R V+S+ + WR
Sbjct: 347 RRASWKRDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRH 406
Query: 373 GMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPE 432
G +F LLD D + W +G G + R + + Q +DP GEY++ W+ E
Sbjct: 407 GADWFEHHLLDYDTASNWGNWCAAAGMT--GGRINRFNIAK-QTKDYDPAGEYIKTWVKE 463
Query: 433 LARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467
LA +P +I P AP + +GLNYP +
Sbjct: 464 LAEVPAAYIADPNQAPRELRD----RIGLNYPNKL 494
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 193/458 (42%), Gaps = 63/458 (13%)
Query: 10 FRRDLRIEDNPAL-AAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKS 68
FR DLR+EDN AL AA R ++ + + P + + G + K ++L QSLK
Sbjct: 21 FRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMG--KHRFTFLQQSLKQ 78
Query: 69 LGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSY 128
L EL + L L I T+++ D + L + E+L +LG+ Q +
Sbjct: 79 LRTELEM--RGQKLIVLTGTFDRI-LTELISERQVDAIFLSQHQGYYERL-QLGLLQQRF 134
Query: 129 N--------GDLLYEPWEIYDERGHAFTTFDAYWDKC----LQMQMEPASILPPWRLVQA 176
+ L+ E+ E TF + K ++P + LP +
Sbjct: 135 PFLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSLPKNIS 194
Query: 177 AGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236
++ +L +D AL + + F + Y + R L
Sbjct: 195 YPGFKAETLNELASDDFEGGERAAL------------THLTSYFSGESAGTYKQTRNALD 242
Query: 237 GNSTSL-LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRY 295
S+S SP+L G LSVR++ L A E F ES + + REY
Sbjct: 243 DFSSSTKFSPWLAQGCLSVRQIMAALR------AYETEFGENESSYWISFELLWREY--- 293
Query: 296 LCFNFPFTHERPLLSNLKYFPWHADLGN----------FKAWRQGRTGYPLVDAGMRELW 345
F + H + L F + G F+ W G T YP+V+A M++L
Sbjct: 294 -FFWYALKHGKRL------FAFSGLSGKSPKTSFYSERFQKWCSGNTPYPIVNACMKQLN 346
Query: 346 ATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYIS--GSLPDG 403
ATG++ NR R +V+S V L L WR+G YF L+D D+ + WQY++ G+ P G
Sbjct: 347 ATGYMSNRGRQLVASCFVHELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRG 406
Query: 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWI 441
H R + E Q ++DP+ E++ +W +L+ P + +
Sbjct: 407 H---RQFNLEKQTERYDPDNEFIERWAGDLSGQPIDSV 441
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 118/490 (24%), Positives = 204/490 (41%), Gaps = 47/490 (9%)
Query: 7 IVWFRRDLRIEDNPALAAAARDGS-VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQS 65
+VW +RDLR+ D+ L AA G +Y + P G + ++ QSL + +
Sbjct: 6 LVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAINRD 65
Query: 66 L-KSLGAELVLFKTESTLAALLECISAIKATKVVFNH--LYDPVSLVRDHSIKEKLVELG 122
L +S G L++ T A + AI+A +++H + + RD L
Sbjct: 66 LAQSKGEVLIVTSDWQTCFARIAERYAIEA---IYSHQEVGLACTFQRD---------LA 113
Query: 123 ISVQSYNGDLLYE--PWEIYDERGHAFTTFDAYWDKCLQMQM-EPASILPPWRLVQAAGT 179
++ D+++ P+ +D +W + ++ +P W + AA
Sbjct: 114 LAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA-- 171
Query: 180 IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKN--RQKLGG 237
LGL + + + + G A L +F + YY++ L
Sbjct: 172 -------TLGLRSDIPATWQSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224
Query: 238 NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESV----TFFLRAMGLREYS 293
++ S +SPYL +G +S+R+++Q L + + S F++
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284
Query: 294 RYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353
+ C N + LL P AW+ G TG PLVDA MR L TG+++ R
Sbjct: 285 EFRCVNRAYD---SLLQQSSDAP----AAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFR 337
Query: 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPE 413
+R ++ S + + WR G+ Y LD + +Q +G G R+ +P
Sbjct: 338 MRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGV--TGTNTIRIYNPT 395
Query: 414 IQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDL- 472
Q + D EG+++ +W+PELA++P + PW P + V L Y KP++DL+
Sbjct: 396 KQAQEHDSEGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEAS 455
Query: 473 ---GRERLTQ 479
R+RL Q
Sbjct: 456 AKQARDRLWQ 465
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 195/453 (43%), Gaps = 60/453 (13%)
Query: 1 MGGNRTIVWFRRDLRIEDNPALAAAARDGS------VFPVYT-WCPKEEGQFYPGRVSRW 53
M + WF DLR+ DNP L A++ +P T + + Q G +
Sbjct: 1 MSKKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR 60
Query: 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHS 113
+L Q+L+ L SL +LG +L + AL ++ ++ T + + +
Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPL-LPYQALRHLLTQVEITDIYVDAVAGSDERQAIAR 119
Query: 114 IKEKLVELGISVQSYNGDLLYEPWEIY--DERGHAFTTFDAYWDKC-LQMQMEPASILPP 170
I + + I Q+ + LL EP + + FT F + L M +LPP
Sbjct: 120 IHQDFSSVHIHQQALH-SLLSEPQLPFALEALPSTFTQFRKQVETISLSAPMGYPHVLPP 178
Query: 171 ----WRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLL 226
W+L ++ +E + +A +G G G ++ + +
Sbjct: 179 IEQGWQLPL--------------MDIVTEPNHSAFVG-GEQAGLTHCQNYFSSLLPS--- 220
Query: 227 RYYKNRQKLGG-NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285
RY + R L G + ++ SP+L G +S + ++ L + E G T+++
Sbjct: 221 RYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAML-------QRYEAVHGANDSTYWIF 273
Query: 286 AMGL-REY-----SRYLCFNFPFT---HERPLLSNLKYFPWHADLGNFKAWRQGRTGYPL 336
L REY RY F F+ ++PL S ++A F W+ G T +P+
Sbjct: 274 FELLWREYFYWYARRYGAKLFRFSGIGEKKPLTS------FYAQ--RFLQWKHGETPFPI 325
Query: 337 VDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYI 396
V+A MR+L TG++ NR R +V+S V L L WR+G YF L+D D+ + WQY+
Sbjct: 326 VNACMRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYL 385
Query: 397 SGSLPDGHELERLDSPEIQGSKFDPEGEYVRQW 429
+G D + + E Q +DP+GE+V +W
Sbjct: 386 AGVGADPRGSRQFNL-EKQAHTYDPKGEFVAKW 417
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 327 WRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADL 386
+ G TG L+DA REL TG+ NR R V+SF K L + WR+G +++ L+D D+
Sbjct: 418 FNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDV 477
Query: 387 ECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPT-EWIHHPW 445
+ WQY++G D R+ +P Q +D +G YVR W+PE+A+ E + W
Sbjct: 478 SSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAW 537
Query: 446 DAPPNVLKAAGVELGLNYPKPI 467
A LK AG+E + P+
Sbjct: 538 TASKEDLKTAGLEGNIMVTDPV 559
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,689,657
Number of Sequences: 539616
Number of extensions: 11417941
Number of successful extensions: 25508
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 25278
Number of HSP's gapped (non-prelim): 116
length of query: 644
length of database: 191,569,459
effective HSP length: 124
effective length of query: 520
effective length of database: 124,657,075
effective search space: 64821679000
effective search space used: 64821679000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)