Query 006464
Match_columns 644
No_of_seqs 259 out of 1667
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 01:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u3d_A Cryptochrome 1 apoprote 100.0 4E-126 1E-130 1065.7 44.6 497 4-502 12-509 (509)
2 3fy4_A 6-4 photolyase; DNA rep 100.0 2E-121 7E-126 1026.7 43.3 477 1-489 1-501 (537)
3 3tvs_A Cryptochrome-1; circadi 100.0 9E-119 3E-123 1007.5 36.2 474 4-486 4-513 (538)
4 1np7_A DNA photolyase; protein 100.0 7E-117 2E-121 986.8 43.9 469 1-482 3-484 (489)
5 2wq7_A RE11660P; lyase-DNA com 100.0 7E-117 2E-121 996.4 43.8 475 1-489 24-525 (543)
6 1owl_A Photolyase, deoxyribodi 100.0 7E-116 2E-120 976.7 42.2 462 1-486 1-473 (484)
7 1dnp_A DNA photolyase; DNA rep 100.0 2E-116 7E-121 976.7 37.2 458 5-486 2-469 (471)
8 2e0i_A 432AA long hypothetical 100.0 5E-113 2E-117 940.4 36.2 424 6-486 3-430 (440)
9 2j4d_A Cryptochrome 3, cryptoc 100.0 3E-111 9E-116 947.6 38.6 461 4-483 40-516 (525)
10 2j07_A Deoxyribodipyrimidine p 100.0 6E-108 2E-112 897.1 41.5 418 4-486 2-419 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 3.1E-90 1.1E-94 770.2 26.2 415 4-442 38-495 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 2E-84 6.9E-89 723.8 31.1 402 5-431 38-481 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 6.8E-66 2.3E-70 567.9 25.3 425 5-473 16-480 (522)
14 3dlo_A Universal stress protei 73.3 33 0.0011 30.5 11.5 118 4-127 25-153 (155)
15 3s3t_A Nucleotide-binding prot 56.8 57 0.002 28.0 9.5 115 13-128 13-145 (146)
16 3rjz_A N-type ATP pyrophosphat 56.6 33 0.0011 33.8 8.4 98 20-127 19-121 (237)
17 3hgm_A Universal stress protei 51.1 92 0.0031 26.6 9.9 88 13-101 10-118 (147)
18 2lnd_A De novo designed protei 49.1 30 0.001 28.1 5.4 63 57-122 38-103 (112)
19 3fdx_A Putative filament prote 45.0 1.4E+02 0.0049 25.2 10.5 110 18-128 16-142 (143)
20 3mt0_A Uncharacterized protein 44.2 1.9E+02 0.0065 28.1 12.1 114 1-129 4-127 (290)
21 3tnj_A Universal stress protei 44.0 1.5E+02 0.0052 25.3 10.9 123 4-129 7-146 (150)
22 3l49_A ABC sugar (ribose) tran 40.9 1.4E+02 0.0047 28.7 10.3 73 54-130 19-94 (291)
23 3fg9_A Protein of universal st 40.6 1.8E+02 0.0061 25.1 11.5 111 18-128 30-155 (156)
24 2gvs_A Chemosensory protein CS 36.9 7.7 0.00026 33.7 0.2 22 416-437 87-108 (109)
25 2dum_A Hypothetical protein PH 36.5 1.8E+02 0.006 25.6 9.6 116 13-129 13-155 (170)
26 3i8o_A KH domain-containing pr 34.9 1.6E+02 0.0054 26.6 8.6 87 31-129 33-131 (142)
27 3h75_A Periplasmic sugar-bindi 31.3 1.4E+02 0.0049 29.8 8.9 73 54-131 18-95 (350)
28 1vp8_A Hypothetical protein AF 31.1 76 0.0026 30.3 6.0 69 57-127 30-103 (201)
29 1sur_A PAPS reductase; assimil 31.0 1.6E+02 0.0056 27.6 8.7 73 57-131 31-106 (215)
30 1jmv_A USPA, universal stress 30.7 2.4E+02 0.0082 23.7 9.7 114 13-129 10-137 (141)
31 3uug_A Multiple sugar-binding 28.5 1.9E+02 0.0065 28.3 9.1 73 54-130 17-92 (330)
32 3l6u_A ABC-type sugar transpor 27.7 1.7E+02 0.0059 28.0 8.5 74 54-131 22-98 (293)
33 3jy6_A Transcriptional regulat 27.2 2.7E+02 0.0093 26.4 9.8 70 54-130 21-93 (276)
34 3lwz_A 3-dehydroquinate dehydr 25.9 2.6E+02 0.0088 25.5 8.3 72 63-139 42-116 (153)
35 8abp_A L-arabinose-binding pro 25.5 2.5E+02 0.0085 27.0 9.2 73 54-130 16-90 (306)
36 3kip_A 3-dehydroquinase, type 25.5 2.7E+02 0.0092 25.7 8.4 68 67-139 55-126 (167)
37 2iel_A Hypothetical protein TT 25.2 2.4E+02 0.0083 25.2 7.8 69 57-128 58-133 (138)
38 3p6l_A Sugar phosphate isomera 24.3 2.3E+02 0.0079 26.9 8.6 66 57-127 63-133 (262)
39 3loq_A Universal stress protei 23.0 5.1E+02 0.017 24.9 11.1 100 17-129 182-289 (294)
40 3iz5_H 60S ribosomal protein L 22.8 1.2E+02 0.004 30.1 5.8 53 72-129 125-177 (258)
41 3v7e_A Ribosome-associated pro 22.7 1.1E+02 0.0039 24.5 4.9 44 83-129 17-60 (82)
42 3qk7_A Transcriptional regulat 22.5 2.6E+02 0.0089 26.9 8.7 71 54-130 24-96 (294)
43 3m9w_A D-xylose-binding peripl 22.4 1.7E+02 0.0059 28.5 7.4 73 54-130 16-91 (313)
44 3n8k_A 3-dehydroquinate dehydr 22.2 2.4E+02 0.0083 26.1 7.5 73 62-139 62-137 (172)
45 3lgb_A DNA primase large subun 22.0 1.5E+02 0.0051 28.2 6.2 64 335-399 20-87 (194)
46 3fvv_A Uncharacterized protein 21.4 2.6E+02 0.0089 25.6 8.1 43 56-99 94-136 (232)
47 3egc_A Putative ribose operon 21.3 2.2E+02 0.0074 27.3 7.8 70 54-129 22-94 (291)
48 1zun_A Sulfate adenylyltransfe 21.1 3.4E+02 0.011 27.6 9.4 75 54-130 31-111 (325)
49 3dbi_A Sugar-binding transcrip 20.4 4.5E+02 0.015 25.8 10.2 71 54-129 77-150 (338)
50 3e61_A Putative transcriptiona 20.2 3.2E+02 0.011 25.8 8.7 70 54-130 22-94 (277)
51 3lmz_A Putative sugar isomeras 20.2 2.4E+02 0.0081 26.9 7.7 66 57-127 61-131 (257)
No 1
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=3.9e-126 Score=1065.65 Aligned_cols=497 Identities=61% Similarity=1.164 Sum_probs=427.3
Q ss_pred CcEEEEecCCCCCCCCHHHHHHHhCCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHH
Q 006464 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLA 83 (644)
Q Consensus 4 ~~~LvWFRrDLRl~DN~AL~~A~~~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~ 83 (644)
.++|||||||||++||+||.+|++.++|+||||+||..++.+.+++.+++||++||++|+++|+++|++|+|++++++.+
T Consensus 12 ~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~ 91 (509)
T 1u3d_A 12 GCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVA 91 (509)
T ss_dssp -CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHH
T ss_pred CcEEEEECCCCccchhHHHHHHHhCCCEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 36899999999999999999998877999999999987765566777788999999999999999999999998657788
Q ss_pred HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhccCC
Q 006464 84 ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163 (644)
Q Consensus 84 ~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~~~~ 163 (644)
+|.++++++++++|+++++|+|+++.||++|+++|++.||+++++++++|++|+++.++.|++|++|++||++++..+..
T Consensus 92 ~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~~~~~~ 171 (509)
T 1u3d_A 92 SLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYD 171 (509)
T ss_dssp HHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHTCSSC
T ss_pred HHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999876433
Q ss_pred CC-CCCCCccccccCCCCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCC
Q 006464 164 PA-SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242 (644)
Q Consensus 164 p~-~~~~p~~~~p~~~~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~ 242 (644)
+. +.++|..+.+ ..+..++++.+++.+.............|+|||++|+++|++||++++..|..+||.|+.++||+
T Consensus 172 ~~~~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~Rd~p~~~~tS~ 249 (509)
T 1u3d_A 172 PESPLLPPKKIIS--GDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 (509)
T ss_dssp CCCCCCCCSCCCB--TTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCC
T ss_pred CCCCCCCccccCc--cccCCCChhHhCCCcccccchhhhccccCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 32 1222221111 11112345566654321111111111248999999999999999999999999999999999999
Q ss_pred CchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChh
Q 006464 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLG 322 (644)
Q Consensus 243 LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~ 322 (644)
|||||||||||||+|++++.+++..+..++...+.++++.|++||+||||++++++++|.+...++.++++.+||..|++
T Consensus 250 LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~ 329 (509)
T 1u3d_A 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDEN 329 (509)
T ss_dssp CHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHH
T ss_pred CChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCChH
Confidence 99999999999999999987643211112222234678899999999999999999999988888888889999999999
Q ss_pred hHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCC
Q 006464 323 NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPD 402 (644)
Q Consensus 323 ~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d 402 (644)
.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|+|||||+||+|+|
T Consensus 330 ~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d 409 (509)
T 1u3d_A 330 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPD 409 (509)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHH
Q 006464 403 GHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482 (644)
Q Consensus 403 ~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~ 482 (644)
++||||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+++||.+|.+||.|||||+++|++|+++|+
T Consensus 410 ~~py~RifNP~~Q~~kfDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~ 489 (509)
T 1u3d_A 410 SREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALS 489 (509)
T ss_dssp CCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHH
T ss_pred CCccccccCHHHHHHhcCCCchhHHHhCHHhhccccccccCcccCChHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhHHhhhhhcCCCCccc
Q 006464 483 KMWEMEAADNAMDSNGTNEV 502 (644)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ 502 (644)
++++..++.+++..+|.+|+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~ 509 (509)
T 1u3d_A 490 QMWQLEAASRAAIENGSEEG 509 (509)
T ss_dssp HHHHHHCC------------
T ss_pred HHHhhHHHHHHHhhcCccCC
Confidence 99999999999999998874
No 2
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-121 Score=1026.74 Aligned_cols=477 Identities=28% Similarity=0.472 Sum_probs=412.5
Q ss_pred CCC-CcEEEEecCCCCCCCCHHHHHHHhCC-CeEEEEEeCCCccCcc---------CCchhhHHHHHHHHHHHHHHHHhc
Q 006464 1 MGG-NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQF---------YPGRVSRWWLKQSLSYLGQSLKSL 69 (644)
Q Consensus 1 m~~-~~~LvWFRrDLRl~DN~AL~~A~~~~-~vlpvfi~dP~~~~~~---------~~~~~~r~FLlesL~dL~~~L~~l 69 (644)
|+| +++||||||||||+||+||++|++.+ +|+||||+||..+... ..+..+.+||++||.+|+++|+++
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~ 80 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKL 80 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 777 67899999999999999999999865 8999999999765421 245566679999999999999999
Q ss_pred CCcEEEEECCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCccccccc-CCccc
Q 006464 70 GAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDER-GHAFT 148 (644)
Q Consensus 70 G~~L~v~~g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~-g~~~~ 148 (644)
|++|+|++| ++.++|.+++++++|++|+++++|+|+++.||++|+++|++.||.+++|++++|++|++|.++. |++|+
T Consensus 81 G~~L~v~~G-~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~ 159 (537)
T 3fy4_A 81 GSRLLVFKG-EPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPL 159 (537)
T ss_dssp TCCCEEEES-CHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCS
T ss_pred CCceEEEEC-CHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCC
Confidence 999999987 6788999999999999999999999999999999999999999999999999999999998654 57999
Q ss_pred chHHHHHHHHhccCCCCCC-CCCccccccC-----CCCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHH
Q 006464 149 TFDAYWDKCLQMQMEPASI-LPPWRLVQAA-----GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVE 222 (644)
Q Consensus 149 tf~~f~~~~~~~~~~p~~~-~~p~~~~p~~-----~~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~ 222 (644)
+|++|++++......+.|. .+|..+.+.. .....++++++++..... .....|+|||++|+++|++||.
T Consensus 160 vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~-----~~~~~~~~Ge~~A~~~L~~Fl~ 234 (537)
T 3fy4_A 160 SYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQ-----ADWTPFRGGESEALKRLTKSIS 234 (537)
T ss_dssp SHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGS-----SCCCSCCCSHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcHHhcCCCcccc-----cccCCCCccHHHHHHHHHHHHh
Confidence 9999999987653211111 1111111100 111234556666643210 0112489999999999999998
Q ss_pred H--HhhhhhhcccCCC---CCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHH
Q 006464 223 Q--HLLRYYKNRQKLG---GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297 (644)
Q Consensus 223 ~--~l~~Y~~~Rd~~~---~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~ 297 (644)
+ .+..|.+.||.|. .++||+|||||+|||||||+|++++.+.. ........+++.|++||+|||||++++
T Consensus 235 ~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~-----~~~~~~~~~~~~f~~eL~WRef~~~~~ 309 (537)
T 3fy4_A 235 DKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIY-----KDVKKHTSPPVSLLGQLLWREFFYTTA 309 (537)
T ss_dssp CHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHH-----HTTSCCCCTTTSHHHHHHHHHHHHHHH
T ss_pred CchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHH-----hhcccccccHHHHHHHHHHHHHHHHHH
Confidence 6 6999999999986 58999999999999999999999987643 111224466778999999999999999
Q ss_pred HhCCCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHh-hcCCCchHHHHH
Q 006464 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLLPWRWGMKY 376 (644)
Q Consensus 298 ~~~P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk-~L~idWr~G~~~ 376 (644)
+++|.+...++.+.+..++|..|++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+||||+|++|
T Consensus 310 ~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~ 389 (537)
T 3fy4_A 310 FGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDV 389 (537)
T ss_dssp HTCTTTTSSTTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHH
T ss_pred HHCcchhcccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999988777888888999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred HHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcC
Q 006464 377 FWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456 (644)
Q Consensus 377 F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g 456 (644)
|+++|||||+++|+|||||+||||+|+. |||||||++|++||||+|+|||||||||++||+++||+||++|..+|+++|
T Consensus 390 F~~~liD~D~a~n~g~Wqw~ag~g~d~~-~fRifNP~~Q~~kfDp~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g 468 (537)
T 3fy4_A 390 FERLLIDSDWAINNGNWMWLSCSSFFYQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKAN 468 (537)
T ss_dssp HHHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHT
T ss_pred HHHHccccccccChHhhhhhcccCCCcc-cccccCHHHHHHHhCCCchHHHHhCHhhcCCCHHhhCCcccCCHHHHHhcC
Confidence 9999999999999999999999999977 999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCcCCCChHHHHHHHHHHHHHhHhhHH
Q 006464 457 VELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489 (644)
Q Consensus 457 ~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~~~~ 489 (644)
|.+|.+||+|||||+++|++|+++|++..+.-+
T Consensus 469 ~~~g~~YP~PIVdh~~ar~~a~~~~~~~~~~~~ 501 (537)
T 3fy4_A 469 CIVGKDYPKPMVLHDSASKECKRKMGEAYALNK 501 (537)
T ss_dssp CCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876543
No 3
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=8.5e-119 Score=1007.48 Aligned_cols=474 Identities=24% Similarity=0.411 Sum_probs=407.8
Q ss_pred CcEEEEecCCCCCCCCHHHHHHHhCC----CeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhc---CCcEEEE
Q 006464 4 NRTIVWFRRDLRIEDNPALAAAARDG----SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSL---GAELVLF 76 (644)
Q Consensus 4 ~~~LvWFRrDLRl~DN~AL~~A~~~~----~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~l---G~~L~v~ 76 (644)
+++|||||||||++||+||.+|++.+ +|+||||+||..++....+..+.+||++||.+|+++|+++ |++|+|+
T Consensus 4 ~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~ 83 (538)
T 3tvs_A 4 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVF 83 (538)
T ss_dssp CEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEE
T ss_pred CcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 57899999999999999999998643 7999999999877654456555569999999999999999 9999999
Q ss_pred ECCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCccccccc-CCcccchHHHHH
Q 006464 77 KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDER-GHAFTTFDAYWD 155 (644)
Q Consensus 77 ~g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~-g~~~~tf~~f~~ 155 (644)
+| ++.++|.+|+++++|++|++|++|+|++++||++|+++|++.||.+++|++++|++|++|.+++ |.+|.+|++|++
T Consensus 84 ~G-~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f~~ 162 (538)
T 3tvs_A 84 EG-EPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLH 162 (538)
T ss_dssp ES-CHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHHHH
T ss_pred eC-CHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHHHH
Confidence 86 5788999999999999999999999999999999999999999999999999999999998776 568899999998
Q ss_pred HHHhccCCCCCCCCCcc--c----cccCC--C----CCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHH
Q 006464 156 KCLQMQMEPASILPPWR--L----VQAAG--T----IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ 223 (644)
Q Consensus 156 ~~~~~~~~p~~~~~p~~--~----~p~~~--~----~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~ 223 (644)
++......+.|.+.|.. + .|... . ...++++++++..... .......|+|||++|+++|++||..
T Consensus 163 ~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~---~~~~~~~~~~Ge~~A~~~L~~Fl~~ 239 (538)
T 3tvs_A 163 TVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNM---GFLAKINWRGGETQALLLLDERLKV 239 (538)
T ss_dssp HHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCS---SCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCcccc---cccccCCCCCCHHHHHHHHHHHHHh
Confidence 87554322212222211 1 01000 0 1124455666543210 0001235899999999999999943
Q ss_pred ----HhhhhhhcccCCC--CCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccC-------CcchHHHHHHHHHHH
Q 006464 224 ----HLLRYYKNRQKLG--GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE-------GKESVTFFLRAMGLR 290 (644)
Q Consensus 224 ----~l~~Y~~~Rd~~~--~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~-------~~~s~~~fireL~WR 290 (644)
.+..|++.|+.+. .++||+|||||+|||||||+|++++.+.. ..... ...+++.|++||+||
T Consensus 240 ~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~f~~eL~WR 314 (538)
T 3tvs_A 240 EQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLF-----KNVQLRACVRGVQMTGGAHITGQLIWR 314 (538)
T ss_dssp HHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHT-----CSSSCCCCCSSSCCTTTTTTHHHHHHH
T ss_pred hhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHH-----hhhcccccccccccchHHHHHHHHHHH
Confidence 3889999999885 57999999999999999999999987532 11001 224567899999999
Q ss_pred HHHHHHHHhCCCCCCCccccccCCCCCCC-ChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHh-hcCC
Q 006464 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLL 368 (644)
Q Consensus 291 Ef~~~l~~~~P~~~~~~~~~~~~~~~W~~-d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk-~L~i 368 (644)
|||+++++++|.+...++.+.+..++|.. |++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+|
T Consensus 315 ef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~i 394 (538)
T 3tvs_A 315 EYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQ 394 (538)
T ss_dssp HHHHHHHHHSSCTTSSSSCSSCCCCCCCCCCSSHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCC
T ss_pred HHHHHHHHhCcchhhccCChhhhcCCccccCHHHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhCC
Confidence 99999999999988778888888999988 889999999999999999999999999999999999999999999 9999
Q ss_pred CchHHHHHHHHhcccccCCCCccchhhhhCCCC-CCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCC
Q 006464 369 PWRWGMKYFWDTLLDADLECDILGWQYISGSLP-DGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447 (644)
Q Consensus 369 dWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~-d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~ 447 (644)
|||+|++||+++|||||+++|+|||||+||+|+ |+.||||||||++|++||||+|+|||||||||++||+++||+||++
T Consensus 395 dWr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRifNP~~Q~~kfDp~G~YIrrwvPEL~~lp~~~Ih~Pw~~ 474 (538)
T 3tvs_A 395 SWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 474 (538)
T ss_dssp CHHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHHCSTTTHHHHSCTTCTTGGGTCGGGSSSCCSSCCSHHHH
T ss_pred CchHHHHHHHHHcccCchhhchhhhhhhhcCCCcCCCCceeeeCHHHHHHHhCCCcchHHHhChhhcCCCHHhhcCcccC
Confidence 999999999999999999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred ChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHHHhHh
Q 006464 448 PPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486 (644)
Q Consensus 448 p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~ 486 (644)
|..+|+++||.+|.+||+|||||+++|++|+++|+++++
T Consensus 475 ~~~~~~~~~~~~g~~YP~PIVdh~~ar~~al~~~~~~~~ 513 (538)
T 3tvs_A 475 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRN 513 (538)
T ss_dssp HTTHHHHSSCCSSSSSCCCSSCSHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 4
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=6.6e-117 Score=986.81 Aligned_cols=469 Identities=27% Similarity=0.444 Sum_probs=402.8
Q ss_pred CCCCcEEEEecCCCCCCCCHHHHHHHhCC-CeEEEEEeCCCccCc-----cCCchhhHHHHHHHHHHHHHHHHhcCCcEE
Q 006464 1 MGGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQ-----FYPGRVSRWWLKQSLSYLGQSLKSLGAELV 74 (644)
Q Consensus 1 m~~~~~LvWFRrDLRl~DN~AL~~A~~~~-~vlpvfi~dP~~~~~-----~~~~~~~r~FLlesL~dL~~~L~~lG~~L~ 74 (644)
|.++++|||||||||++||+||.+|++.+ +|+||||+||..++. ...+..+.+||++||++|+++|+++|++|+
T Consensus 3 m~~~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~ 82 (489)
T 1np7_A 3 HVPPTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLL 82 (489)
T ss_dssp CCCCEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 44467899999999999999999998765 799999999987653 223555567999999999999999999999
Q ss_pred EEECCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHH
Q 006464 75 LFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYW 154 (644)
Q Consensus 75 v~~g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~ 154 (644)
|++| ++.++|.++++++++++|+++++|+|+++.||++|+++|++.||+++++++++|++|+++.+..|++|.+|++|+
T Consensus 83 v~~g-~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~ 161 (489)
T 1np7_A 83 VTTG-LPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFR 161 (489)
T ss_dssp EEES-CHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHH
T ss_pred EEEC-CHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHHH
Confidence 9986 578899999999999999999999999999999999999999999999999999999999887789999999999
Q ss_pred HHHH-hccCCCCCCCCCccccccCCC---CCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHH--HHHhhhh
Q 006464 155 DKCL-QMQMEPASILPPWRLVQAAGT---IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV--EQHLLRY 228 (644)
Q Consensus 155 ~~~~-~~~~~p~~~~~p~~~~p~~~~---~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl--~~~l~~Y 228 (644)
+++. .....+.|.+.|..+.+.+.. ...+.++++++.... ......|+|||++|+++|++|| ++++..|
T Consensus 162 ~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y 236 (489)
T 1np7_A 162 KDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFD-----HRSVLAFQGGETAGLARLQDYFWHGDRLKDY 236 (489)
T ss_dssp HHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCCCCC-----TTSSCCCCCSHHHHHHHHHHHHTTSCCGGGH
T ss_pred HHHHHhccCCCCCCCCcccccCccccccccCCCCHhhcCCCCcC-----ccccCCCCCcHHHHHHHHHHHHhcchhHhhh
Confidence 9976 432111122222221111110 112345555553210 0111258999999999999999 5789999
Q ss_pred hhcccCC-CCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 006464 229 YKNRQKL-GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERP 307 (644)
Q Consensus 229 ~~~Rd~~-~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~ 307 (644)
.++||.+ +.++||+|||||||||||||+|++++.+.. ......++++.|++||+|||||+++++++|.+...+
T Consensus 237 ~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~------~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~ 310 (489)
T 1np7_A 237 KETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------QERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNR 310 (489)
T ss_dssp HHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHH------HHTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGST
T ss_pred hhcccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHh------hcccccchHHHHHHHHHHHHHHHHHHHHCcchhhhh
Confidence 9999987 468999999999999999999999987532 112345678889999999999999999999876544
Q ss_pred cccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCC
Q 006464 308 LLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387 (644)
Q Consensus 308 ~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a 387 (644)
....++.++|..|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||++
T Consensus 311 ~~~~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a 390 (489)
T 1np7_A 311 GGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVC 390 (489)
T ss_dssp TTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHH
T ss_pred cCcccccCCCccCHHHHHHHHcCCCCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHHHHHHHHhcccChh
Confidence 44445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCC
Q 006464 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467 (644)
Q Consensus 388 ~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PI 467 (644)
+|+|||||+||||+|+. |||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+++||.+|.+||.||
T Consensus 391 ~N~g~wqw~ag~g~d~~-~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~Pi 469 (489)
T 1np7_A 391 SNWGNWNYTAGIGNDAR-DFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPC 469 (489)
T ss_dssp HHHHHHHHHHTSSCCTT-SCCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCS
T ss_pred cChHhhhhhhccCCCcc-cccccCHHHHhhhcCCCCccHHHhCHHhhccCcccccCCccCCHHHHHHhccccCCCCCCCC
Confidence 99999999999999987 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 006464 468 IDLDLGRERLTQAIF 482 (644)
Q Consensus 468 vd~~~ar~~~~~~~~ 482 (644)
|||+++|++|+++++
T Consensus 470 Vd~~~~r~~a~~~~~ 484 (489)
T 1np7_A 470 VNFHQSVEARRKIEQ 484 (489)
T ss_dssp SCHHHHHHHHHTCC-
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
No 5
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=7.1e-117 Score=996.36 Aligned_cols=475 Identities=25% Similarity=0.412 Sum_probs=410.5
Q ss_pred CCCC--cEEEEecCCCCCCCCHHHHHHHhCC-C------eEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCC
Q 006464 1 MGGN--RTIVWFRRDLRIEDNPALAAAARDG-S------VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGA 71 (644)
Q Consensus 1 m~~~--~~LvWFRrDLRl~DN~AL~~A~~~~-~------vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~ 71 (644)
|.|+ .+|||||||||++||+||.+|++.+ + |+||||+||..++....+..+.+||++||++|+++|+++|+
T Consensus 24 ~~~~~~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~ 103 (543)
T 2wq7_A 24 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNS 103 (543)
T ss_dssp -CTTCEEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5552 3499999999999999999997643 3 99999999987754445656667999999999999999999
Q ss_pred cEEEEECCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCccccc-ccCCcccch
Q 006464 72 ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYD-ERGHAFTTF 150 (644)
Q Consensus 72 ~L~v~~g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~-~~g~~~~tf 150 (644)
+|+|++| ++.++|.++++++++++|+++++|+|+++.||+.|+++|++.||+++++++++|++|+++.. ..|++|.+|
T Consensus 104 ~L~v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vf 182 (543)
T 2wq7_A 104 RLFVVRG-KPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITY 182 (543)
T ss_dssp CCEEEES-CHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSH
T ss_pred eEEEEeC-CHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccH
Confidence 9999986 57889999999999999999999999999999999999999999999999999999999655 458999999
Q ss_pred HHHHHHHHhccCCCCCCCCCcccccc--C--CC--------CCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHH
Q 006464 151 DAYWDKCLQMQMEPASILPPWRLVQA--A--GT--------IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLT 218 (644)
Q Consensus 151 ~~f~~~~~~~~~~p~~~~~p~~~~p~--~--~~--------~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~ 218 (644)
++|++++......+ |...|..+.+. + .. ...+.+++++++.. ......|+|||++|+++|+
T Consensus 183 t~F~~~~~~~~~~~-p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~------~~~~~~~~~Ge~~A~~~L~ 255 (543)
T 2wq7_A 183 QKFLGIVEQLKVPK-VLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPE------ELGPNKFPGGETEALRRME 255 (543)
T ss_dssp HHHHHHHTTSCCCC-CCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGG------GCCCCCSCCSHHHHHHHHH
T ss_pred HHHHHHHHHccCCC-CCCcchhccccccccccccccccccccCCCCHHHcCCCcc------ccccCCCCCCHHHHHHHHH
Confidence 99999975532111 22112111100 0 00 11123334444321 1112359999999999999
Q ss_pred HHHHHH--hhhhhhcccCCCC--CCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHH
Q 006464 219 EFVEQH--LLRYYKNRQKLGG--NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294 (644)
Q Consensus 219 ~Fl~~~--l~~Y~~~Rd~~~~--~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~ 294 (644)
+||+++ +..|.++||.|.. ++||+|||||||||||||+|++++.+.. +......++++.|++||+|||||+
T Consensus 256 ~Fl~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~-----~~~~~~~~~~~~f~~eL~WREf~~ 330 (543)
T 2wq7_A 256 ESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEII-----KRQPKHSQPPVSLIGQLMWREFYY 330 (543)
T ss_dssp HHHTCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHH-----HHCSSCCCTTTSHHHHHHHHHHHH
T ss_pred HHHhCChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHH-----hccccccccHHHHHHHHHHHHHHH
Confidence 999999 9999999999974 9999999999999999999999987642 111123466778999999999999
Q ss_pred HHHHhCCCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHh-hcCCCchHH
Q 006464 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLLPWRWG 373 (644)
Q Consensus 295 ~l~~~~P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk-~L~idWr~G 373 (644)
++++++|.+...++.+.+..++|..|++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+||||+|
T Consensus 331 ~~~~~~P~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G 410 (543)
T 2wq7_A 331 TVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEG 410 (543)
T ss_dssp HHHHTCTTTTSSTTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHH
T ss_pred HHHHhCCccccccCChHhhcCCCccCHHHHHHHHcCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCCCchH
Confidence 9999999998777888888999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHH
Q 006464 374 MKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLK 453 (644)
Q Consensus 374 ~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~ 453 (644)
++||+++|||||+++|+|||||+||+|+|+. |||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+
T Consensus 411 ~~~F~~~LiD~D~a~n~g~Wqw~aG~g~D~~-~~RifNP~~q~~kfDp~g~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~ 489 (543)
T 2wq7_A 411 QRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQR 489 (543)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTTGGGGTCTTCHHHHHHSGGGTTSCHHHHTSGGGSCHHHHH
T ss_pred HHHHHHHhccCCcccCHHHHHHHhcCCCcCc-cccccCHHHHhhhcCCCchhHHHhCHHhhccccccccCcccCChHHHH
Confidence 9999999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred HcCCcCCCCCCcCCCChHHHHHHHHHHHHHhHhhHH
Q 006464 454 AAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489 (644)
Q Consensus 454 ~~g~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~~~~ 489 (644)
++||.+|.+||.|||||+++|++|+++|+++++...
T Consensus 490 ~~~~~~g~~YP~PiVd~~~~r~~al~~~~~~~~~~~ 525 (543)
T 2wq7_A 490 AYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKVNR 525 (543)
T ss_dssp HTTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCCCCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999986553
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=6.7e-116 Score=976.74 Aligned_cols=462 Identities=28% Similarity=0.482 Sum_probs=400.2
Q ss_pred CCCCcEEEEecCCCCCCCCHHHHHHHh-CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECC
Q 006464 1 MGGNRTIVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79 (644)
Q Consensus 1 m~~~~~LvWFRrDLRl~DN~AL~~A~~-~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~ 79 (644)
|+ +.+|||||||||++||+||.+|++ .++|+||||+||..++....+..+.+||++||++|+++|+++|++|+|++|
T Consensus 1 m~-~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g- 78 (484)
T 1owl_A 1 MA-APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQG- 78 (484)
T ss_dssp ---CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEES-
T ss_pred CC-ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC-
Confidence 64 368999999999999999999987 669999999999876544456666679999999999999999999999986
Q ss_pred chHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHh
Q 006464 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ 159 (644)
Q Consensus 80 ~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~ 159 (644)
++.++|.++++++++++|+++++|+|+++.||++|+++|++.||+++++++++|++|+++.++.|++|++|++|++++.+
T Consensus 79 ~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~~ 158 (484)
T 1owl_A 79 DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQA 158 (484)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999998889999999999999876
Q ss_pred ccCCCCCCCCCcccccc---------CC-CCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhh
Q 006464 160 MQMEPASILPPWRLVQA---------AG-TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYY 229 (644)
Q Consensus 160 ~~~~p~~~~~p~~~~p~---------~~-~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~ 229 (644)
... +.|.+.|..+.+. +. ....++++.+++... . . . .|+|||++|+++|++||++++..|.
T Consensus 159 ~~~-~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~-~-~-~~~~Ge~~A~~~L~~Fl~~~l~~Y~ 229 (484)
T 1owl_A 159 QPK-PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWD-----G-G-F-PVEPGETAAIARLQEFCDRAIADYD 229 (484)
T ss_dssp SCC-CCCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCCC-----S-C-C-SSCSSHHHHHHHHHHHHHTGGGGHH
T ss_pred hcC-CCCCCCccccccccccccccccccccCCCCCHHHcCCCcc-----c-c-C-cCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 532 2122222111100 00 111223333333210 1 1 2 5899999999999999999999999
Q ss_pred hcccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Q 006464 230 KNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309 (644)
Q Consensus 230 ~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~ 309 (644)
++||.|+.++||+|||||||||||||+|++++.+.... .......++++.|++||+|||||+++++++|.+...++.
T Consensus 230 ~~rd~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~---~~~~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~ 306 (484)
T 1owl_A 230 PQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHAL---SRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYR 306 (484)
T ss_dssp HHTTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCS
T ss_pred cccCCCCccCCcCccHhHcCCCcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHHHHHHHHhCCccccccCC
Confidence 99999999999999999999999999999998764310 000112356789999999999999999999998888888
Q ss_pred cccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCC
Q 006464 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECD 389 (644)
Q Consensus 310 ~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N 389 (644)
+.++.++|..|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|
T Consensus 307 ~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n 386 (484)
T 1owl_A 307 SLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAAN 386 (484)
T ss_dssp TGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHH
T ss_pred hhhhcCCCcCCHHHHHHHHcCCCCChhHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcccCCcccC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCC
Q 006464 390 ILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469 (644)
Q Consensus 390 ~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd 469 (644)
+|||||+||||+|++| ||||||++|++||||+|+|||||||||+++|+++||+||+++ +.+| +||.||||
T Consensus 387 ~g~wqw~ag~G~d~~p-fRifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~Pw~~~----~~~~-----~YP~PiVd 456 (484)
T 1owl_A 387 NGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITP----IERR-----GYPAPIVN 456 (484)
T ss_dssp HHHHHHTTTCSSSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCH----HHHT-----TSCCCSSC
T ss_pred HHHHHHhhCcCCCCCc-cceeCHHHHhhhcCCCchhHHHhChhhhcCChhhcCCcccch----hhhc-----CCCCCCCC
Confidence 9999999999999999 999999999999999999999999999999999999999983 2333 89999999
Q ss_pred hHHHHHHHHHHHHHhHh
Q 006464 470 LDLGRERLTQAIFKMWE 486 (644)
Q Consensus 470 ~~~ar~~~~~~~~~~~~ 486 (644)
|+++|++|+++|+++++
T Consensus 457 ~~~~r~~a~~~~~~~~~ 473 (484)
T 1owl_A 457 HNLRQKQFKALYNQLKA 473 (484)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.2e-116 Score=976.68 Aligned_cols=458 Identities=29% Similarity=0.494 Sum_probs=397.4
Q ss_pred cEEEEecCCCCCCCCHHHHHHHh--CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEE----EC
Q 006464 5 RTIVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLF----KT 78 (644)
Q Consensus 5 ~~LvWFRrDLRl~DN~AL~~A~~--~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~----~g 78 (644)
++|||||||||++||+||.+|++ .++|+||||+||..++....+..+.+||++||++|+++|+++|++|+|+ +|
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g 81 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 81 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHH
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCC
Confidence 57999999999999999999987 6799999999998665444566666799999999999999999999998 54
Q ss_pred CchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHH
Q 006464 79 ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL 158 (644)
Q Consensus 79 ~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~ 158 (644)
++.++|.+++++++++.|+++++|+|+++.||++|+++|++ |+++++++++|++|+++.++.|++|++|++|++++.
T Consensus 82 -~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 158 (471)
T 1dnp_A 82 -ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL 158 (471)
T ss_dssp -HHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhhcccCCCCCCcchHHHHHHHH
Confidence 57889999999999999999999999999999999999976 999999999999999999888999999999999876
Q ss_pred hccCC--CCCCCCCccccccCCCCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCC
Q 006464 159 QMQME--PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236 (644)
Q Consensus 159 ~~~~~--p~~~~~p~~~~p~~~~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~ 236 (644)
+...+ |.+.+.|..+.+ +. +....++++++.. .......|+|||++|+++|++|+++++..|.++||.|+
T Consensus 159 ~~l~~~~p~~~~~p~~~~~-~~-~~~~~~~~l~~~~------~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~ 230 (471)
T 1dnp_A 159 KRLREGMPECVAAPKVRSS-GS-IEPSPSITLNYPR------QSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPA 230 (471)
T ss_dssp HHHHTCCCCCCCCCCCCTT-CC-CCCCCCCCCCSCC------CCCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTT
T ss_pred HhccccCCCCCCCccccCc-cc-ccCCCCcccCCCc------cccccccCCCCHHHHHHHHHHHHHHHHHHhhhccCCcC
Confidence 54221 111122211111 00 0011122232211 01112358999999999999999999999999999999
Q ss_pred CCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcch-HHHHHHHHHHHHHHHHHHHhCCCCCCC-ccccccCC
Q 006464 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES-VTFFLRAMGLREYSRYLCFNFPFTHER-PLLSNLKY 314 (644)
Q Consensus 237 ~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s-~~~fireL~WREf~~~l~~~~P~~~~~-~~~~~~~~ 314 (644)
.++||+|||||||||||||+|++++.+.. . . ...++ ++.|++||+|||||+++++++|.+... ++.+.++.
T Consensus 231 ~~~tS~LSpyL~~G~lSpr~v~~~~~~~~-----~-~-~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~ 303 (471)
T 1dnp_A 231 VEGTSRLSASLATGGLSPRQCLHRLLAEQ-----P-Q-ALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDR 303 (471)
T ss_dssp SCCSCCCHHHHHHTSSCHHHHHHHHHHHC-----G-G-GGGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGG
T ss_pred ccCCCCCCHhHcCCCcCHHHHHHHHHHHh-----c-c-ccccccHHHHHHHHHHHHHHHHHHHhCCchhccCCcchhhhc
Confidence 99999999999999999999999987532 1 1 12345 678999999999999999999998766 78887888
Q ss_pred CCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchh
Q 006464 315 FPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQ 394 (644)
Q Consensus 315 ~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wq 394 (644)
++|..|++.|++|++|+|||||||||||||++|||||||+||+|||||||+|+||||+|++||+++|||||+++|+||||
T Consensus 304 l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wq 383 (471)
T 1dnp_A 304 VQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQ 383 (471)
T ss_dssp SCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHHHHHHhccCCCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHH
Q 006464 395 YISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474 (644)
Q Consensus 395 w~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar 474 (644)
|+||||+|++||||||||++|++||||+|+|||||||||+++|+++||+||++ ++.+||.+ +||.|||||+++|
T Consensus 384 w~ag~G~d~~py~RifNp~~q~~kfDp~G~YIrrwvPeL~~~p~~~ih~Pw~~----~~~~~~~~--~YP~PiVd~~~~r 457 (471)
T 1dnp_A 384 WAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKW----AQKAGVTL--DYPQPIVEHKEAR 457 (471)
T ss_dssp HHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHH----HHTTTCCC--SSCCCSSCHHHHH
T ss_pred hhcCCCCCCCCcceecCHHHHHHhcCCCchhHHHhChhhccCChhhcCCchhh----HHhcCCCC--CCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 45678876 8999999999999
Q ss_pred HHHHHHHHHhHh
Q 006464 475 ERLTQAIFKMWE 486 (644)
Q Consensus 475 ~~~~~~~~~~~~ 486 (644)
++|+++|+++++
T Consensus 458 ~~al~~~~~~~~ 469 (471)
T 1dnp_A 458 VQTLAAYEAARK 469 (471)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhc
Confidence 999999988763
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-113 Score=940.35 Aligned_cols=424 Identities=27% Similarity=0.463 Sum_probs=375.7
Q ss_pred EEEEecCCCCCCCCHHHHHHHhC-CCeEEEEEeCCCccCccC-CchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHH
Q 006464 6 TIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFY-PGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLA 83 (644)
Q Consensus 6 ~LvWFRrDLRl~DN~AL~~A~~~-~~vlpvfi~dP~~~~~~~-~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~ 83 (644)
+|||||||||++||+||.+|++. ++|+||||+||..++... .+..+.+||++||++|+++|+++|++|+|++| ++.+
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g-~~~~ 81 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFFG-EAEK 81 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEES-CHHH
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEEC-CHHH
Confidence 89999999999999999999874 489999999998765433 56666679999999999999999999999986 5788
Q ss_pred HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhccCC
Q 006464 84 ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163 (644)
Q Consensus 84 ~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~~~~ 163 (644)
+|.++++ +++.|+++++|+|+++.||++|+++|++.||+++++++++|++|+++ +|++|++|++++.+....
T Consensus 82 ~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~------~y~vftpf~~~~~~~~~~ 153 (440)
T 2e0i_A 82 VVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF------HHRNFTSFYNEVSKVKVR 153 (440)
T ss_dssp HHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC------CCSSHHHHHHHHTTSCCC
T ss_pred HHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc------CcccCcHHHHHHHHhccc
Confidence 8999988 99999999999999999999999999999999999999999999888 688999999998775222
Q ss_pred --CCCCCCCccccccCCCCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCC
Q 006464 164 --PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTS 241 (644)
Q Consensus 164 --p~~~~~p~~~~p~~~~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS 241 (644)
+.+.++|. ..|.+. .+.++ . . ....|+|||++|+++|+ |+++++..| ++||.|+.++||
T Consensus 154 ~p~~~~~~~~-~~~~p~-----~~~~l--p------~---~~~~~~~Ge~~A~~~L~-Fl~~~l~~Y-~~rd~p~~~~tS 214 (440)
T 2e0i_A 154 EPETMEGSFD-VTDSSM-----NVDFL--L------T---FKKIESPLFRGGRREGL-YLLHRNVDF-RRRDYPAENNNY 214 (440)
T ss_dssp CCCCCCCCBC-CCSSSB-----CGGGG--G------G---TCCCCCTTCCCSHHHHH-HHHTCCCCG-GGTTCTTTTCCC
T ss_pred ccccCCCCcc-cCCCcc-----hhhhC--C------c---cccCCCCCHHHHHHHHH-HHHhhhhcC-CcCCCccccCCC
Confidence 11111111 111110 11111 0 0 12247999999999999 999999999 999999999999
Q ss_pred CCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCCh
Q 006464 242 LLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADL 321 (644)
Q Consensus 242 ~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~ 321 (644)
+|||||+|||||||+|++++ ++++.|++||+|||||+++++++|.+...++.+.++.++|..|+
T Consensus 215 ~LSPyL~~G~lSpr~v~~~~----------------~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~d~ 278 (440)
T 2e0i_A 215 RLSPHLKFGTISMREAYYTQ----------------KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENNE 278 (440)
T ss_dssp CCHHHHHTTSSCHHHHHHHS----------------TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCCCH
T ss_pred CccHhHhCCCCCHHHHHHHh----------------cCHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhcCCcccch
Confidence 99999999999999999885 23467999999999999999999999888888888889999999
Q ss_pred hhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCC
Q 006464 322 GNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLP 401 (644)
Q Consensus 322 ~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~ 401 (644)
+.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|+|||||+||+|+
T Consensus 279 ~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~ 358 (440)
T 2e0i_A 279 SYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTGV 358 (440)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHcccCCccccHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHH
Q 006464 402 DGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAI 481 (644)
Q Consensus 402 d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~ 481 (644)
|+ |||||||++|++||||+|+|||||||||+++|+++||+||++ +|.+||.|||||+++|++|+++|
T Consensus 359 d~--~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~-----------~~~~YP~PiVd~~~~r~~a~~~~ 425 (440)
T 2e0i_A 359 DY--MFRVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHSIYKT-----------KVPGYPSPIVNWLERVNYVKSEY 425 (440)
T ss_dssp CC--SCCCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTTTTTS-----------CCTTSCCCSSCHHHHHHHHHHHH
T ss_pred CC--CCCccCHHHHHHHhCCCcHhHHHhCHHhhccCcccccCchhh-----------cCCCCCCCCCCHHHHHHHHHHHH
Confidence 98 999999999999999999999999999999999999999986 37799999999999999999999
Q ss_pred HHhHh
Q 006464 482 FKMWE 486 (644)
Q Consensus 482 ~~~~~ 486 (644)
++++.
T Consensus 426 ~~~~~ 430 (440)
T 2e0i_A 426 KNVKA 430 (440)
T ss_dssp HHC--
T ss_pred HHHHh
Confidence 88763
No 9
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=2.6e-111 Score=947.55 Aligned_cols=461 Identities=26% Similarity=0.333 Sum_probs=374.6
Q ss_pred CcEEEEecCCCCCCCCHHHHHHHhCC-CeEEEEEeCCCccCc------cCCchhhHHHHHHHHHHHHHHHHhcCCcEEEE
Q 006464 4 NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQ------FYPGRVSRWWLKQSLSYLGQSLKSLGAELVLF 76 (644)
Q Consensus 4 ~~~LvWFRrDLRl~DN~AL~~A~~~~-~vlpvfi~dP~~~~~------~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~ 76 (644)
+++|||||||||++||+||.+|++.+ +|+||||+||..+.. ...+..+.+||++||++|+++|+++|++|+|+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~ 119 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIR 119 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999998765 799999999986543 22355566799999999999999999999999
Q ss_pred ECCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcC--cEEEEEcCCeeecCcccccccCCcccchHHHH
Q 006464 77 KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG--ISVQSYNGDLLYEPWEIYDERGHAFTTFDAYW 154 (644)
Q Consensus 77 ~g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~g--V~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~ 154 (644)
+| ++.++|.++++++++++|+++++|+|+++.||++|+++|++.| |+++++++++|++|++|....|++|.+|++|+
T Consensus 120 ~g-~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vft~F~ 198 (525)
T 2j4d_A 120 SG-KPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFR 198 (525)
T ss_dssp ES-CHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSHHHHH
T ss_pred eC-CHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCcccHHHHH
Confidence 86 6788999999999999999999999999999999999999999 89999999999999999888789999999999
Q ss_pred HHHHhccCCCCCCCCCccccccCC---CCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHH-H-HHhhhhh
Q 006464 155 DKCLQMQMEPASILPPWRLVQAAG---TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV-E-QHLLRYY 229 (644)
Q Consensus 155 ~~~~~~~~~p~~~~~p~~~~p~~~---~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl-~-~~l~~Y~ 229 (644)
+++.+....+.|.+.|..+.+.+. ....++++++++.... . .....|+|||++|+++|++|| + ++|..|.
T Consensus 199 r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~~--~---~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~ 273 (525)
T 2j4d_A 199 KSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQE--V---TRGMRFVGGESAGVGRVFEYFWKKDLLKVYK 273 (525)
T ss_dssp HHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTCCCCC--C---CSEEEECCSHHHHHHHHHHHHTTSCCGGGHH
T ss_pred HHHHHhcCCCCCCCCccccCCccccccccCCCCHHHcCCCccc--c---cccCCCCCcHHHHHHHHHHHHhhCchHhhhc
Confidence 998763211112111211111010 0112334455543210 0 001238999999999999999 6 5799999
Q ss_pred hcccCC-CCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCC-CCCCc
Q 006464 230 KNRQKL-GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPF-THERP 307 (644)
Q Consensus 230 ~~Rd~~-~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~-~~~~~ 307 (644)
++||.+ +.++||+|||||||||||||+|++++.+.. ......++++.|++||+|||||+++++++|. +...+
T Consensus 274 ~~Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~------~~~~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~~ 347 (525)
T 2j4d_A 274 ETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYE------KERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLG 347 (525)
T ss_dssp HHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHH------HHTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTSTT
T ss_pred ccCCCccccccCCCcChhhcCCcCCHHHHHHHHHHHh------hcccccccHHHHHHHHHHHHHHHHHHHHcCchhhhcc
Confidence 999986 789999999999999999999999987532 1123456788899999999999999987743 32222
Q ss_pred cccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCC
Q 006464 308 LLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387 (644)
Q Consensus 308 ~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a 387 (644)
... ...++|..+++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||++
T Consensus 348 ~~~-~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a 426 (525)
T 2j4d_A 348 GPR-NVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPC 426 (525)
T ss_dssp TTT-TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCCHH
T ss_pred Cch-hhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCcHHHHHHHHHhccccchh
Confidence 222 3568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCC
Q 006464 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467 (644)
Q Consensus 388 ~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PI 467 (644)
+|+|||||+||+|+|+.| ||||||++|++||||+|+|||||||||+++|+++||+||+++ .++|+||.+||.||
T Consensus 427 ~n~g~WQw~aG~g~D~~~-~RifNP~~q~kk~Dp~G~YIrrwvPEL~~~p~~~ih~Pw~~~-----~~~~~~g~~Yp~Pi 500 (525)
T 2j4d_A 427 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM-----YMDTVVPLKHGNGP 500 (525)
T ss_dssp HHHHHHHHHHTCSSCGGG-CCCCCHHHHHHHHCTTCHHHHHHSGGGTTSCTTTTTSCHHHH-----TCCCSSCCSCCC--
T ss_pred cChHHHHhhcCCCCCccc-cccCCHHHHhhhcCCCchhHHHhChhhhcCChhcccCCccCc-----ccccccCCCCCCCc
Confidence 999999999999999987 799999999999999999999999999999999999999974 47999999999999
Q ss_pred CChHHHHHHHHHHHHH
Q 006464 468 IDLDLGRERLTQAIFK 483 (644)
Q Consensus 468 vd~~~ar~~~~~~~~~ 483 (644)
||+.++|+++.++.++
T Consensus 501 ~~~~~~~~~~~~~~~~ 516 (525)
T 2j4d_A 501 MAGGSKSGGGFRGSHS 516 (525)
T ss_dssp ----------------
T ss_pred ccchhhhhccchhhhc
Confidence 9999999998877753
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=6.4e-108 Score=897.10 Aligned_cols=418 Identities=30% Similarity=0.481 Sum_probs=371.8
Q ss_pred CcEEEEecCCCCCCCCHHHHHHHhCCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHH
Q 006464 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLA 83 (644)
Q Consensus 4 ~~~LvWFRrDLRl~DN~AL~~A~~~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~ 83 (644)
+++|||||||||++||+||.+|++.++|+||||+||..++ . +..+.+||++||++|+++|+++|++|+|++| ++.+
T Consensus 2 ~~~l~WfrrDlRl~Dn~aL~~A~~~~~v~~vfi~d~~~~~--~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g-~~~~ 77 (420)
T 2j07_A 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK--T-TPRRRAWFLENVRALREAYRARGGALWVLEG-LPWE 77 (420)
T ss_dssp CCEEEEESSCCCSTTCHHHHHHHTTSCEEEEEEECHHHHS--S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEES-CHHH
T ss_pred ceEEEEeCCCCCccccHHHHHHHhCCCEEEEEEECCcccc--C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC-CHHH
Confidence 3689999999999999999999976699999999997664 3 5566679999999999999999999999986 6788
Q ss_pred HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhccCC
Q 006464 84 ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163 (644)
Q Consensus 84 ~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~~~~ 163 (644)
+|.+++++++++.|+++++|+|+++.||++|+++| ||+++++++++|++|++ |++|.+|++|++++. ....
T Consensus 78 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~-----~~~~~~~t~f~k~~~-~~~~ 148 (420)
T 2j07_A 78 KVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL-----PRAYRVYTPFSRLYR-GAAP 148 (420)
T ss_dssp HHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC-----SSCCSSHHHHHTTCC-CCCC
T ss_pred HHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEeCCCEEEccCC-----CCccccccHHHHHHh-hccC
Confidence 99999999999999999999999999999999998 99999999999999987 789999999999875 2111
Q ss_pred CCCCCCCccccccCCCCCCCCcccCCCCchhhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCC
Q 006464 164 PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243 (644)
Q Consensus 164 p~~~~~p~~~~p~~~~~~~~~le~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~L 243 (644)
| .+.|... + + +++..++.. . ......|+|||++|+++|++||++++..|.++||.|+.++||+|
T Consensus 149 p--~~~p~~~-~----~---p~~~~~l~~----~--~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~~tS~L 212 (420)
T 2j07_A 149 P--LPPPEAL-P----K---GPEEGEIPR----E--DPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRL 212 (420)
T ss_dssp C--CCCCSSC-C----C---CCCCCCCCC----C--CCSSCCCCCSHHHHHHHHHHHHHHTGGGHHHHTTCTTCTTSCCC
T ss_pred C--CCCcccc-C----C---CCccccCCC----c--ccccccCCCcHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCCc
Confidence 2 1122111 1 0 011111211 0 01123589999999999999999999999999999999999999
Q ss_pred chhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChhh
Q 006464 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGN 323 (644)
Q Consensus 244 SPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~ 323 (644)
||||||||||||+|++++.+.. .++++.|++||+|||||+++++++|.+...++.+.++.++|..|++.
T Consensus 213 SpyL~~G~lSpr~v~~~~~~~~-----------~~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~d~~~ 281 (420)
T 2j07_A 213 SPYFALGVLSPRLAAWEAERRG-----------GEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEAL 281 (420)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHC-----------SHHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHH
T ss_pred chhhcCCccCHHHHHHHHHHHh-----------ccCHHHHHHHHHHHHHHHHHHHhCCcccccccchhhhcCCcccCHHH
Confidence 9999999999999999986421 35678899999999999999999999887888888888999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCC
Q 006464 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403 (644)
Q Consensus 324 f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~ 403 (644)
|++|++|+|||||||||||||++|||||||+||||||||||+|+|||++|++||+++|||||+++|+|||||+||+|+|+
T Consensus 282 ~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~ 361 (420)
T 2j07_A 282 FQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDA 361 (420)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGG
T ss_pred HHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhhcCCccccHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCccccccccCCcchhhhhccccccCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHHH
Q 006464 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483 (644)
Q Consensus 404 ~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~~ 483 (644)
+||||||||++|++||||+|+|||||||||+++| ||.|||||+++|++|+++|++
T Consensus 362 ~pyfR~fNp~~q~~kfDp~g~yir~w~pel~~~p-------------------------YP~Pivd~~~~r~~a~~~~~~ 416 (420)
T 2j07_A 362 APYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA-------------------------PKDPVVDLEEARRRYLRLARD 416 (420)
T ss_dssp CCTTCCCCHHHHHHHHSTTSHHHHHHCTTCSSSS-------------------------CSSCSSCHHHHHHHHHHHHHH
T ss_pred CCCceeeCHHHHHHHhCCCchhHHHhChhhcCCC-------------------------CCCCccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 999999999999999999988
Q ss_pred hHh
Q 006464 484 MWE 486 (644)
Q Consensus 484 ~~~ 486 (644)
++.
T Consensus 417 ~~~ 419 (420)
T 2j07_A 417 LAR 419 (420)
T ss_dssp HHC
T ss_pred hhc
Confidence 753
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=3.1e-90 Score=770.17 Aligned_cols=415 Identities=20% Similarity=0.227 Sum_probs=326.8
Q ss_pred CcEEEEecCCCCCCCCHHHHHHHh-----CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEEC
Q 006464 4 NRTIVWFRRDLRIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKT 78 (644)
Q Consensus 4 ~~~LvWFRrDLRl~DN~AL~~A~~-----~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g 78 (644)
+.+|||||||||++||+||.+|++ ..+|+||||+||..+. ...+..+.+||++||.+|+++|+++|++|+|++|
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~-~~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~~G 116 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL-LSARRRQLGFLLRGLRRLAADAAARHLPFFLFTG 116 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc-cCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 468999999999999999999985 2389999999998542 2345556679999999999999999999999986
Q ss_pred CchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhh--hcCcEEEEEcCCeeecCcccccccCCcccchHHHHHH
Q 006464 79 ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLV--ELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDK 156 (644)
Q Consensus 79 ~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~--~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~ 156 (644)
++.++ .+|+++++|++|+++.++....+.||++|+++|+ +.||+++++++++|++|+++.++.|.++.||++++.+
T Consensus 117 -~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~t~~~~~~~ 194 (506)
T 3umv_A 117 -GPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSK 194 (506)
T ss_dssp -CTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSCCSSHHHHHHHHHT
T ss_pred -ChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcccccCCCCCCccCHHHHHHH
Confidence 45667 9999999999999975544444588999999997 7899999999999999999988877777777777765
Q ss_pred HHhccCCCCCCCCCccccccCCCCCCCCcccCCCCchhhhhhhhccC-CCCCCchhhHHHHH----HHHHHHHhhhhhhc
Q 006464 157 CLQMQMEPASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLG-RGWSPGWSNADKVL----TEFVEQHLLRYYKN 231 (644)
Q Consensus 157 ~~~~~~~p~~~~~p~~~~p~~~~~~~~~le~l~~~~~~~~~~~~~~~-~~~~gGe~~A~~~L----~~Fl~~~l~~Y~~~ 231 (644)
.+.....+.|.+++....+... .....+..+ .+........... ..|+|||++|+++| ++||++++..|.++
T Consensus 195 ~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~l--~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~~~~~Fl~~~l~~Y~~~ 271 (506)
T 3umv_A 195 VMDEYLVEFPELPAVVPWDREQ-PEGVDWDAL--IARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETD 271 (506)
T ss_dssp THHHHSCCCCCCCCCCCCCSCC-CCCCCHHHH--HHHHHHTSCCCCCCCSSCCSHHHHHHHHHCTTTCHHHHTGGGHHHH
T ss_pred hccccccCCCCCCCcccccccc-ccccChhhh--hhhhccccccccccCCCCCCHHHHHHHHHhhHHHHHHhHHhhhccc
Confidence 5443332222211110000000 000011110 0000000000111 23699999999999 99999999999999
Q ss_pred ccCCCC-CCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHH-HHHHHHHHhCCCCCCCccc
Q 006464 232 RQKLGG-NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLR-EYSRYLCFNFPFTHERPLL 309 (644)
Q Consensus 232 Rd~~~~-~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~WR-Ef~~~l~~~~P~~~~~~~~ 309 (644)
||.|.. ++||+|||||||||||||+|++++.+.. . ...++++.|++||+|| ||++++++++|.+...
T Consensus 272 Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~-----~---~~~~~~~~f~~eL~WRREf~~~~~~~~p~~~~~--- 340 (506)
T 3umv_A 272 RNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCR-----H---LSPKSVDAFLEELVVRRELADNFCYYQPQYDSL--- 340 (506)
T ss_dssp TTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHG-----G---GSHHHHHHHHHHHTHHHHHHHHHHHHCTTTTSG---
T ss_pred cCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHH-----h---hccccHHHHHHHHHHhHHHHHHHHHhCcchhhh---
Confidence 999987 8999999999999999999999986532 1 1456788999999996 9999999999987532
Q ss_pred cccCCCCCCC--------Ch-h---hHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHH--
Q 006464 310 SNLKYFPWHA--------DL-G---NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMK-- 375 (644)
Q Consensus 310 ~~~~~~~W~~--------d~-~---~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~-- 375 (644)
...++|.. |+ + .|++|++|+|||||||||||||++|||||||+||||| |+| |||++|++
T Consensus 341 --~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~a----k~l-l~W~~g~~~~ 413 (506)
T 3umv_A 341 --SGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWA----KKI-LEWTSGPEEA 413 (506)
T ss_dssp --GGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----HHH-HHTSSSHHHH
T ss_pred --hccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHH----Hhh-ccCCCCHHHH
Confidence 12356742 22 2 4999999999999999999999999999999999998 778 99999999
Q ss_pred -----HHHHh-cccccCCCCccchhhhh-CC---CCCCCCcc---cccCccccccccCCcc--hhhhhccccccCCCCCc
Q 006464 376 -----YFWDT-LLDADLECDILGWQYIS-GS---LPDGHELE---RLDSPEIQGSKFDPEG--EYVRQWLPELARMPTEW 440 (644)
Q Consensus 376 -----~F~~~-LlD~D~a~N~g~Wqw~A-G~---g~d~~~~~---RifNP~~q~~k~Dp~G--~yIrrWvPEL~~lp~~~ 440 (644)
||+++ |||||+++|+|||||+| |+ |+|.+||| |||||++|++||||+| +|||+|||||+++|++-
T Consensus 414 ~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpel~~~~~~~ 493 (506)
T 3umv_A 414 LSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEE 493 (506)
T ss_dssp HHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECHHHHHHHhCCCchHHHHHHhCHHhcCCCccc
Confidence 99996 99999999999999999 65 77889998 9999999999999999 99999999999999875
Q ss_pred cc
Q 006464 441 IH 442 (644)
Q Consensus 441 Ih 442 (644)
-+
T Consensus 494 ~~ 495 (506)
T 3umv_A 494 SP 495 (506)
T ss_dssp --
T ss_pred cc
Confidence 44
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=2e-84 Score=723.77 Aligned_cols=402 Identities=21% Similarity=0.236 Sum_probs=309.6
Q ss_pred cEEEEecCCCCCCCCHHHHHHHh-----CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECC
Q 006464 5 RTIVWFRRDLRIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79 (644)
Q Consensus 5 ~~LvWFRrDLRl~DN~AL~~A~~-----~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~ 79 (644)
++|||||||||++||+||.+|++ ..+|+||||+||..+. .+..+.+||++||++|+++|+++|++|+|++|
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g- 113 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---AGIRQYEFMLKGLQELEVSLSRKKIPSFFLRG- 113 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEES-
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc---cCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeC-
Confidence 68999999999999999999974 2489999999998653 35556679999999999999999999999986
Q ss_pred chHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHH--HHHH
Q 006464 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAY--WDKC 157 (644)
Q Consensus 80 ~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f--~~~~ 157 (644)
++.++|.++++++++++|+++.+|++.+.+||++|++.+ ||+++++++++|++|+++.++.+ |++|+.| +++.
T Consensus 114 ~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~~~~~~~l~~~~~~~~~~~--~~v~tf~~~~~~~ 188 (482)
T 2xry_A 114 DPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFFEVDAHNVVPCWEASQKHE--YAAHTFRPKLYAL 188 (482)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEEEECCSSSSCHHHHCSSCC--SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEEEEeCCEEccccccccCCC--CceecchHHHHHH
Confidence 678899999999999999999999999999998888765 99999999999999998877654 6555533 2233
Q ss_pred HhccCCCCCCCCCccc---cccCCCCCCCCcccCCCCchhhhhh-------hhcc--CCCCCCchhhHHHHHHHHHHHHh
Q 006464 158 LQMQMEPASILPPWRL---VQAAGTIDGCSIEDLGLEDESEKSS-------NALL--GRGWSPGWSNADKVLTEFVEQHL 225 (644)
Q Consensus 158 ~~~~~~p~~~~~p~~~---~p~~~~~~~~~le~l~~~~~~~~~~-------~~~~--~~~~~gGe~~A~~~L~~Fl~~~l 225 (644)
+.....+.|...|... +|.+..+. ..++.+......+... .... ...|+|||++|+++|++||++++
T Consensus 189 ~~~~~~~~p~~~p~~~~~~lp~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l 267 (482)
T 2xry_A 189 LPEFLEEFPELEPNSVTPELSAGAGMV-ETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRL 267 (482)
T ss_dssp HHHHCCCCCCCCCCSSCCC----------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSCCCSHHHHHHHHHHHHHHTH
T ss_pred HHhhccccCCCCCCCCccccCCccchh-hhhhhhcccCCCCCcchhhhccccccccccCCCCCcHHHHHHHHHHHHHHHH
Confidence 2222221111111000 01000110 0011111100000000 0001 11589999999999999999999
Q ss_pred hhhhhcccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHH-HHHHHHHHHHhCCCCC
Q 006464 226 LRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMG-LREYSRYLCFNFPFTH 304 (644)
Q Consensus 226 ~~Y~~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL~-WREf~~~l~~~~P~~~ 304 (644)
..|.++||.|+.++||+|||||+|||||||+|++++.+.. ...++++.|++||+ ||||++++++++|.+.
T Consensus 268 ~~Y~~~Rd~p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~---------~~~~~~e~fl~ELi~WREf~~~~~~~~P~~~ 338 (482)
T 2xry_A 268 DSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAE---------SNPGSKKAFLDEILIWKEISDNFCYYNPGYD 338 (482)
T ss_dssp HHHHHHTTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHCC---------CCTTHHHHHHHHHTHHHHHHHHHHHHCTTTT
T ss_pred hhhccccCCCCccCCCCcCHHHhCCccCHHHHHHHHHHhh---------cccccHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999999999986421 13567899999996 9999999999999986
Q ss_pred CCccccccCC--CC-CCCCh-h---hHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCc-hHHHHH
Q 006464 305 ERPLLSNLKY--FP-WHADL-G---NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPW-RWGMKY 376 (644)
Q Consensus 305 ~~~~~~~~~~--~~-W~~d~-~---~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idW-r~G~~~ 376 (644)
..+....+.. +. |..|+ + .|++|++|+|||||||||||||++|||||||+||||| |+| ||| +.|++|
T Consensus 339 ~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL~~tG~mHnr~RM~va----k~L-idW~~~ge~~ 413 (482)
T 2xry_A 339 GFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWA----KKI-LEWSESPEKA 413 (482)
T ss_dssp SGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----HHH-HHTSSSHHHH
T ss_pred ccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHHHHhCccccHHHHHHH----ccc-CCCCchHHHH
Confidence 4332211100 00 23343 2 5999999999999999999999999999999999997 557 999 899999
Q ss_pred HHHh-------cccccCCCCccchhhhhCCCCC----CCCcc---cccCccccccccCCcchhhhhccc
Q 006464 377 FWDT-------LLDADLECDILGWQYISGSLPD----GHELE---RLDSPEIQGSKFDPEGEYVRQWLP 431 (644)
Q Consensus 377 F~~~-------LlD~D~a~N~g~Wqw~AG~g~d----~~~~~---RifNP~~q~~k~Dp~G~yIrrWvP 431 (644)
|+++ |||||+++|+|||||+||++.| .+||| |||||++|++||||+| |||||||
T Consensus 414 f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~fg~~R~fnp~~q~~kfD~~~-yir~w~~ 481 (482)
T 2xry_A 414 LEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKL-YIEKYSA 481 (482)
T ss_dssp HHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHH-HHHHTC-
T ss_pred HHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccccccceeechhHhhhhcCHHH-HHHHHhc
Confidence 9999 4999999999999999984322 35888 9999999999999999 9999995
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=6.8e-66 Score=567.88 Aligned_cols=425 Identities=17% Similarity=0.126 Sum_probs=324.5
Q ss_pred cEEEEecCCCCCCCCHHHHHHHhCCCeEEEEEeCCCccCccC-CchhhHHHHHHHHHHHHHHHHhcCCcEEEEE------
Q 006464 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFY-PGRVSRWWLKQSLSYLGQSLKSLGAELVLFK------ 77 (644)
Q Consensus 5 ~~LvWFRrDLRl~DN~AL~~A~~~~~vlpvfi~dP~~~~~~~-~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~------ 77 (644)
+++.|.--|.-..++++|..+- . ...+|++.+-..+.... .++.+.+|++.||++|+++|+++|.+|++++
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~~-~-~~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~ 93 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAAD-P-AADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDT 93 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTCC-T-TTCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTC
T ss_pred heeEEeecccCCCccchhhhcC-C-CCCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 5689999999999999996541 1 23356666654433322 2556667999999999999999999999987
Q ss_pred CCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCC-eeecCccccc--ccCCcccchHHHH
Q 006464 78 TESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGD-LLYEPWEIYD--ERGHAFTTFDAYW 154 (644)
Q Consensus 78 g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~-~L~~p~~i~~--~~g~~~~tf~~f~ 154 (644)
.++....|.+++++++++.|+++ +|.+..+|++|+++ ||+++.+++. +|++|+++.+ ..+++|+. ++||
T Consensus 94 ~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~m-e~FY 165 (522)
T 3zxs_A 94 GPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLPVRFLPDDRFLCPADEFARWTEGRKQLRM-EWFY 165 (522)
T ss_dssp CSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSCEEEECCCCSSSCHHHHHHHHTTCSSCCH-HHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCcEEEeCCCCcccCHHHHHHhhcCCCCeEe-eHHH
Confidence 24568899999999999999999 79999999999865 9999999986 7889999987 45688876 5999
Q ss_pred HHHHhc-----c-CCCCC----------CCCCccc-cccCCCCCCCCcc-c-CCC-CchhhhhhhhccCCCCCCchhhHH
Q 006464 155 DKCLQM-----Q-MEPAS----------ILPPWRL-VQAAGTIDGCSIE-D-LGL-EDESEKSSNALLGRGWSPGWSNAD 214 (644)
Q Consensus 155 ~~~~~~-----~-~~p~~----------~~~p~~~-~p~~~~~~~~~le-~-l~~-~~~~~~~~~~~~~~~~~gGe~~A~ 214 (644)
+.+.+. . ..|.. ..+|..+ .|.+..+....+. + +.. +.......+......|++||.+|+
T Consensus 166 R~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~~~~~v~~~v~~~~~~~~G~~~~~~~~~ge~~A~ 245 (522)
T 3zxs_A 166 REMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAEVRAVLDLVEARFPRHFGRLRPFHWATDRAEAL 245 (522)
T ss_dssp HHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCHHHHHHHHHHHHHCTTSSSCCCSCCCCCSHHHHH
T ss_pred HHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHhccCCcCccccCCCCCCHHHHH
Confidence 876432 1 11110 0111111 0100000000000 0 000 000000011122356999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCC----CCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHHH-HH
Q 006464 215 KVLTEFVEQHLLRYYKNRQKLGGN----STSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAM-GL 289 (644)
Q Consensus 215 ~~L~~Fl~~~l~~Y~~~Rd~~~~~----~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fireL-~W 289 (644)
++|++||++++..|+.+||.|..+ +||+|||||+||+||||+|++++..+. .....+.++++.|++|| +|
T Consensus 246 ~~L~~Fl~~rl~~Y~~~rD~~~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~-----~~~~~~~~~~e~firellgW 320 (522)
T 3zxs_A 246 RALDHFIRESLPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEW-----REGRAPLNAVEGFIRQILGW 320 (522)
T ss_dssp HHHHHHHHHTGGGTTTTTTCCBTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHH-----HTTSSCHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhhhhhhhhccCcccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHH-----HhcCCchhhHHHHHHHHHHH
Confidence 999999999999999999998655 699999999999999999999987643 12233457789999998 59
Q ss_pred HHHHHHHHHhC-CCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCC
Q 006464 290 REYSRYLCFNF-PFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLL 368 (644)
Q Consensus 290 REf~~~l~~~~-P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~i 368 (644)
|||++++++++ |.+...++....+. .+++|++|+|||||||||||||++|||||||+||||||||||+|+|
T Consensus 321 REF~~~l~~~~~P~~~~~n~~~~~~~--------l~~~~w~G~TG~P~VDA~MRqL~~TGwmHnr~RmmVasfl~k~L~i 392 (522)
T 3zxs_A 321 REYVRGIWTLSGPDYIRSNGLGHSAA--------LPPLYWGKPTRMACLSAAVAQTRDLAYAHHIQRLMVTGNFALLAGV 392 (522)
T ss_dssp HHHHHHHHHHHGGGGGGCCTTCCCBC--------CCGGGGTCCCSCHHHHHHHHHHHHHSCCCHHHHHHTHHHHHHHTTB
T ss_pred HHHHHHHHHHhCcccccccccccccc--------chHHHhcCCCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHcCC
Confidence 99999999986 87765554433322 3346669999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcccc----cCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCC
Q 006464 369 PWRWGMKYFWDTLLDA----DLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHP 444 (644)
Q Consensus 369 dWr~G~~~F~~~LlD~----D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~P 444 (644)
|||+|++||+++|||+ +.++++|||||++|++++++|| ...|.||+|+ .+.+...+|.|
T Consensus 393 dWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~Gg~~~~KPY-------------~~~~~yI~km----s~yc~~c~y~~ 455 (522)
T 3zxs_A 393 DPAEVHEWYLSVYIDALEWVEAPNTIGMSQFADHGLLGSKPY-------------VSSGAYIDRM----SDYCRGCAYAV 455 (522)
T ss_dssp CHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCSSSTTCSSCC-------------CCCHHHHHHH----CSCGGGSSSBT
T ss_pred ChHHHHHHHHHHhcchhhhhhccccccchheecCCccCCCCC-------------CCchHHHHHH----hccccCCccCc
Confidence 9999999999999999 4567889999999998776665 5799999998 68999999999
Q ss_pred CCCChhHHHHcCCcCCCCCCcCCCChHHH
Q 006464 445 WDAPPNVLKAAGVELGLNYPKPIIDLDLG 473 (644)
Q Consensus 445 W~~p~~~~~~~g~~~g~~YP~PIvd~~~a 473 (644)
|+...+ ..|..+..|...|..|...
T Consensus 456 ~~~~g~----~~cp~~~lYW~Fl~rh~~~ 480 (522)
T 3zxs_A 456 KDRTGP----RACPFNLLYWHFLNRHRAR 480 (522)
T ss_dssp TCSSST----TBCHHHHHHHHHHHHTHHH
T ss_pred cccCCC----ccCCCccchHHHHHHHHHH
Confidence 998774 5788889999999988764
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=73.32 E-value=33 Score=30.54 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=67.8
Q ss_pred CcEEEEecCCC-CCCCCHHHHHHHh-----CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEE--
Q 006464 4 NRTIVWFRRDL-RIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVL-- 75 (644)
Q Consensus 4 ~~~LvWFRrDL-Rl~DN~AL~~A~~-----~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v-- 75 (644)
++.|+=. |. --....||..|+. ...+..|+|+++... .......-..+.|.++.+.|++.|.++.+
T Consensus 25 ~~ILv~v--D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~ 98 (155)
T 3dlo_A 25 MPIVVAV--DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR----TKDEDIIEAKETLSWAVSIIRKEGAEGEEHL 98 (155)
T ss_dssp CCEEEEC--CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT----SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEE--CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc----ccHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4444444 44 3344456665542 347889999876421 11111223456777888888888987654
Q ss_pred -EECCchHHHHHHHHHHcCCcEEEEecc-cCchhH-HHHHHHHHHhhhcCcEEEE
Q 006464 76 -FKTESTLAALLECISAIKATKVVFNHL-YDPVSL-VRDHSIKEKLVELGISVQS 127 (644)
Q Consensus 76 -~~g~~~~~~L~~l~~~~~~~~V~~~~~-y~p~~~-~rD~~V~~~l~~~gV~v~~ 127 (644)
...+++...|.+.+++.+++-|+.-.. ...... ..-....+++....++|..
T Consensus 99 ~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 99 LVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVIC 153 (155)
T ss_dssp EESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEE
T ss_pred EecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEE
Confidence 233567888999999999999887632 122111 1111233444555666654
No 15
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=56.78 E-value=57 Score=27.98 Aligned_cols=115 Identities=8% Similarity=-0.049 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHHh-----CCCeEEEEEeCCCccCccCCc-------hhhHHHHHHHHHHHHHHHHhcCC---cEEEEE
Q 006464 13 DLRIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPG-------RVSRWWLKQSLSYLGQSLKSLGA---ELVLFK 77 (644)
Q Consensus 13 DLRl~DN~AL~~A~~-----~~~vlpvfi~dP~~~~~~~~~-------~~~r~FLlesL~dL~~~L~~lG~---~L~v~~ 77 (644)
|.--....||..|+. ...+..|+|+++........+ ...+.-..+.|..+.+.+++.|+ ...+..
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 92 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEISY 92 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEec
Confidence 444445566766642 346888889876532211110 00011344667777778877787 445555
Q ss_pred CCchHHHHHH-HHHHcCCcEEEEecc-cCchhH-HHHHHHHHHhhhcCcEEEEE
Q 006464 78 TESTLAALLE-CISAIKATKVVFNHL-YDPVSL-VRDHSIKEKLVELGISVQSY 128 (644)
Q Consensus 78 g~~~~~~L~~-l~~~~~~~~V~~~~~-y~p~~~-~rD~~V~~~l~~~gV~v~~~ 128 (644)
| ++...|.+ .+++.+++-|+.-.. ...... -.-....+.+...+++|..+
T Consensus 93 g-~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 93 G-IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp E-CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred C-ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 5 56778888 898899999887643 122111 11122344555566777543
No 16
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=56.59 E-value=33 Score=33.83 Aligned_cols=98 Identities=23% Similarity=0.212 Sum_probs=53.0
Q ss_pred HHHHHHHhCC-CeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECC----chHHHHHHHHHHcCC
Q 006464 20 PALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE----STLAALLECISAIKA 94 (644)
Q Consensus 20 ~AL~~A~~~~-~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~----~~~~~L~~l~~~~~~ 94 (644)
-||..|.+.| .|+.|+..-+.....+..+. ..+..++..-+.+|++|+++... +..+.+.+++++.++
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~s~~~h~-------~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i 91 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEESYMYHT-------INANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKI 91 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC--------C-------CSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCCccccCC-------ccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCC
Confidence 3455566677 47777655443211100000 11223344456779999987642 135667777777899
Q ss_pred cEEEEecccCchhHHHHHHHHHHhhhcCcEEEE
Q 006464 95 TKVVFNHLYDPVSLVRDHSIKEKLVELGISVQS 127 (644)
Q Consensus 95 ~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~ 127 (644)
+.|++-.-...+ +|. .+...|.+.|+....
T Consensus 92 ~~vv~Gdi~s~y--qr~-r~e~vc~~~gl~~~~ 121 (237)
T 3rjz_A 92 QGIVAGALASKY--QRK-RIEKVAKELGLEVYT 121 (237)
T ss_dssp SEEECC---CCS--HHH-HHHHHHHHTTCEEEC
T ss_pred cEEEECCcchHH--HHH-HHHHHHHHcCCEEEc
Confidence 999887443333 332 366677777777654
No 17
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=51.06 E-value=92 Score=26.58 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHh-----CCCeEEEEEeCCCc-cCcc----CC------chhhHHHHHHHHHHHHHHHHhcCCcE---
Q 006464 13 DLRIEDNPALAAAAR-----DGSVFPVYTWCPKE-EGQF----YP------GRVSRWWLKQSLSYLGQSLKSLGAEL--- 73 (644)
Q Consensus 13 DLRl~DN~AL~~A~~-----~~~vlpvfi~dP~~-~~~~----~~------~~~~r~FLlesL~dL~~~L~~lG~~L--- 73 (644)
|.--....||..|+. ...+..|+|+++.. .... .. ......-..+.|..+.+.+++.|++.
T Consensus 10 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 89 (147)
T 3hgm_A 10 DGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKV 89 (147)
T ss_dssp CSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccce
Confidence 333334456666542 34688899987642 0000 00 01111244567778888888888654
Q ss_pred --EEEECCchHHHHHHHHHHcCCcEEEEec
Q 006464 74 --VLFKTESTLAALLECISAIKATKVVFNH 101 (644)
Q Consensus 74 --~v~~g~~~~~~L~~l~~~~~~~~V~~~~ 101 (644)
.+..| ++...|.+.+++.+++-|+.-.
T Consensus 90 ~~~~~~g-~~~~~I~~~a~~~~~dliV~G~ 118 (147)
T 3hgm_A 90 RAFVKGG-RPSRTIVRFARKRECDLVVIGA 118 (147)
T ss_dssp EEEEEES-CHHHHHHHHHHHTTCSEEEECS
T ss_pred EEEEecC-CHHHHHHHHHHHhCCCEEEEeC
Confidence 44444 6788899999999999988763
No 18
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=49.07 E-value=30 Score=28.14 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCchHHH---HHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcC
Q 006464 57 QSLSYLGQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG 122 (644)
Q Consensus 57 esL~dL~~~L~~lG~~L~v~~g~~~~~~---L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~g 122 (644)
+-++|+-++++.-|-+|+|+..+..... +..-+++-|++-=+. ...+|.+.. ++|+++++..|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvl-kstdpeelt--qrvreflktag 103 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-KSTDPEELT--QRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-ECCCHHHHH--HHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-ccCCHHHHH--HHHHHHHHhcc
Confidence 6788888999999999999875443333 333455567654332 224676553 45888888766
No 19
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=44.98 E-value=1.4e+02 Score=25.22 Aligned_cols=110 Identities=11% Similarity=0.019 Sum_probs=61.7
Q ss_pred CCHHHHHHHh-----CCCeEEEEEeCCCccCc-c---CCc--hhhHHHHHHHHHHHHHHHHhcCC-----cEEEEECCch
Q 006464 18 DNPALAAAAR-----DGSVFPVYTWCPKEEGQ-F---YPG--RVSRWWLKQSLSYLGQSLKSLGA-----ELVLFKTEST 81 (644)
Q Consensus 18 DN~AL~~A~~-----~~~vlpvfi~dP~~~~~-~---~~~--~~~r~FLlesL~dL~~~L~~lG~-----~L~v~~g~~~ 81 (644)
...||..|+. ...+..|+|+++..... . ... ........+.++.|++-+++.|. ...+..| ++
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g-~~ 94 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEG-SP 94 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEES-CH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEec-Ch
Confidence 5667776642 34788899987642100 0 000 01112445677778888888875 3445555 67
Q ss_pred HHHHHHHHHHcCCcEEEEecccCchhH-HHHHHHHHHhhhcCcEEEEE
Q 006464 82 LAALLECISAIKATKVVFNHLYDPVSL-VRDHSIKEKLVELGISVQSY 128 (644)
Q Consensus 82 ~~~L~~l~~~~~~~~V~~~~~y~p~~~-~rD~~V~~~l~~~gV~v~~~ 128 (644)
.+.|.+.+++.+++-|+.-..-..... -.-....+.+....++|..+
T Consensus 95 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 95 KDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 888999999999999888754211111 11112334455566776543
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=44.17 E-value=1.9e+02 Score=28.08 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=72.4
Q ss_pred CCC-CcEEEEecCCCCCCCCHHHHHHHh-----CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEE
Q 006464 1 MGG-NRTIVWFRRDLRIEDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELV 74 (644)
Q Consensus 1 m~~-~~~LvWFRrDLRl~DN~AL~~A~~-----~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~ 74 (644)
|.| ++.|+=. |.--....||..|+. ...+..|++.+|. ... +.|+++.+.++..|++..
T Consensus 4 M~~~~~ILv~~--D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~--------~~~-----~~l~~~~~~~~~~~~~~~ 68 (290)
T 3mt0_A 4 MQAIRSILVVI--EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR--------DHS-----AALNDLAQELREEGYSVS 68 (290)
T ss_dssp TTTCCEEEEEC--CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS--------CCH-----HHHHHHHHHHHHTTCCEE
T ss_pred hhhhceEEEEe--CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH--------HHH-----HHHHHHHHHHhhCCCeEE
Confidence 544 5555544 777788899988753 3367788887751 111 335556666777888765
Q ss_pred EEE--CCchHHHHHHHHHHcCCcEEEEeccc-CchhH-HHHHHHHHHhhhcCcEEEEEc
Q 006464 75 LFK--TESTLAALLECISAIKATKVVFNHLY-DPVSL-VRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 75 v~~--g~~~~~~L~~l~~~~~~~~V~~~~~y-~p~~~-~rD~~V~~~l~~~gV~v~~~~ 129 (644)
+.. ++++...|.+.+++.+++-|+.-..- ..... ..-....+++...+++|..+.
T Consensus 69 ~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 69 TNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp EEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 432 45678889899999999998876432 11111 112234556667789998886
No 21
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=43.98 E-value=1.5e+02 Score=25.31 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=63.6
Q ss_pred CcEEEEecCCCCCCCCHHHHHHHh-----CCCeEEEEEeCCCcc-----CccCC---chhhHHHHHHHHHHHHHHHHhcC
Q 006464 4 NRTIVWFRRDLRIEDNPALAAAAR-----DGSVFPVYTWCPKEE-----GQFYP---GRVSRWWLKQSLSYLGQSLKSLG 70 (644)
Q Consensus 4 ~~~LvWFRrDLRl~DN~AL~~A~~-----~~~vlpvfi~dP~~~-----~~~~~---~~~~r~FLlesL~dL~~~L~~lG 70 (644)
++.|+=. |.--....||..|+. ...+..|+|+++... +...+ .........++.+.|++-.++.|
T Consensus 7 ~~ILv~v--D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 7 HHILLAV--DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp SEEEEEC--CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEe--CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444443 554555677777642 347888999876421 00000 11112233344444444445556
Q ss_pred Cc---EEEEECCchHHHHHHHHHHcCCcEEEEecc-cCchhHHHHHHHHHHhhhcCcEEEEEc
Q 006464 71 AE---LVLFKTESTLAALLECISAIKATKVVFNHL-YDPVSLVRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 71 ~~---L~v~~g~~~~~~L~~l~~~~~~~~V~~~~~-y~p~~~~rD~~V~~~l~~~gV~v~~~~ 129 (644)
.+ ..+..| ++.+.|.+.+++.+++-|+.-.. ........-....+.+....++|..+.
T Consensus 85 ~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 85 IDPAHRWLVWG-EPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp CCGGGEEEEES-CHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEE
T ss_pred CCcceEEEecC-CHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEe
Confidence 54 555555 67788999999999999887632 121111111123445566678876653
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=40.94 E-value=1.4e+02 Score=28.74 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchH---HHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTL---AALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~---~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+.+...+... ..+.+.+...+++.|++.- ......+ .+.+.+.+.||++..++.
T Consensus 19 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~~~-~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 19 WDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQL---GNLDVLN-PWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEES---SCHHHHH-HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeC---CChhhhH-HHHHHHHHCCCcEEEecC
Confidence 55577788888999999999988653221 2233344456899988762 1111222 234446678999988854
No 23
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=40.64 E-value=1.8e+02 Score=25.14 Aligned_cols=111 Identities=15% Similarity=0.048 Sum_probs=62.3
Q ss_pred CCHHHHHHHh-----CCCeEEEEEeCCCccCccC--Cchh---hHHHHHHHHHHHHHHHHhcCCc-E--EEEECCchHHH
Q 006464 18 DNPALAAAAR-----DGSVFPVYTWCPKEEGQFY--PGRV---SRWWLKQSLSYLGQSLKSLGAE-L--VLFKTESTLAA 84 (644)
Q Consensus 18 DN~AL~~A~~-----~~~vlpvfi~dP~~~~~~~--~~~~---~r~FLlesL~dL~~~L~~lG~~-L--~v~~g~~~~~~ 84 (644)
...||..|+. ...+..|+|+++....... .... ...-..+.|..+.+.+++.|+. . .+..++++...
T Consensus 30 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~ 109 (156)
T 3fg9_A 30 SERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDV 109 (156)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHH
Confidence 3456655542 3478999999875321110 0000 1113456677777778888873 3 45552567888
Q ss_pred HHHH-HHHcCCcEEEEeccc-CchhHHHHHHHHHHhhhcCcEEEEE
Q 006464 85 LLEC-ISAIKATKVVFNHLY-DPVSLVRDHSIKEKLVELGISVQSY 128 (644)
Q Consensus 85 L~~l-~~~~~~~~V~~~~~y-~p~~~~rD~~V~~~l~~~gV~v~~~ 128 (644)
|.+. +++.+++-|+.-... ....+-.-......+....++|..+
T Consensus 110 I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 110 ILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEe
Confidence 9898 899999998876432 2221111112234455566776543
No 24
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=36.93 E-value=7.7 Score=33.67 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=18.0
Q ss_pred ccccCCcchhhhhccccccCCC
Q 006464 416 GSKFDPEGEYVRQWLPELARMP 437 (644)
Q Consensus 416 ~~k~Dp~G~yIrrWvPEL~~lp 437 (644)
-.||||+|.|.++|--+++.++
T Consensus 87 ~~KyDP~g~y~~ky~~~~~~~~ 108 (109)
T 2gvs_A 87 KAKYDPDGTYSKKYEDREKELH 108 (109)
T ss_dssp HHHHCTTCTTTHHHHTTTCCSC
T ss_pred HHHHCCCchHHHHHHHHHHHcc
Confidence 4689999999999988887654
No 25
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=36.51 E-value=1.8e+02 Score=25.61 Aligned_cols=116 Identities=8% Similarity=0.000 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHh----C-CCeEEEEEeCCCccCc----cC---------Cchhh---HHHHHHHHHHHHHHHHhcCC
Q 006464 13 DLRIEDNPALAAAAR----D-GSVFPVYTWCPKEEGQ----FY---------PGRVS---RWWLKQSLSYLGQSLKSLGA 71 (644)
Q Consensus 13 DLRl~DN~AL~~A~~----~-~~vlpvfi~dP~~~~~----~~---------~~~~~---r~FLlesL~dL~~~L~~lG~ 71 (644)
|.--....||..|+. . ..+..|+|+++..... .. ..... +.-..+.|..+.+.++..|+
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 92 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444445567777753 2 3688888887642110 00 00111 11234556666677777776
Q ss_pred cE----EEEECCchHHHHHHHHHHcCCcEEEEeccc-CchhH-HHHHHHHHHhhhcCcEEEEEc
Q 006464 72 EL----VLFKTESTLAALLECISAIKATKVVFNHLY-DPVSL-VRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 72 ~L----~v~~g~~~~~~L~~l~~~~~~~~V~~~~~y-~p~~~-~rD~~V~~~l~~~gV~v~~~~ 129 (644)
+. .+..| ++...|.+.+++.+++.|+.-..- ..... ..-....+++....++|..+.
T Consensus 93 ~~~~~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 93 AKNVRTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp CSEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred ceeeeeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 54 34444 677889999999999998876431 22111 111123345555677877663
No 26
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=34.91 E-value=1.6e+02 Score=26.58 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=55.4
Q ss_pred eEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEEC------------CchHHHHHHHHHHcCCcEEE
Q 006464 31 VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKT------------ESTLAALLECISAIKATKVV 98 (644)
Q Consensus 31 vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g------------~~~~~~L~~l~~~~~~~~V~ 98 (644)
++|-||++--+. ....++.+.+.=++=|+.|++.-.+.++++.+... ++.-..|.+++++.++. |+
T Consensus 33 iIP~~Vl~EL~~-~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a~-lv 110 (142)
T 3i8o_A 33 IIPEAVVSELEY-QANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNSI-LL 110 (142)
T ss_dssp EEEHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTCE-EE
T ss_pred EehHHHHHHHHH-HHHccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCCE-EE
Confidence 668777753211 11123333445567777776665667888887631 23445688899998875 55
Q ss_pred EecccCchhHHHHHHHHHHhhhcCcEEEEEc
Q 006464 99 FNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 99 ~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~ 129 (644)
++ |..+.+.|+..||++....
T Consensus 111 Tn----------D~~l~kvA~~~GI~V~~l~ 131 (142)
T 3i8o_A 111 TS----------DWIQYNLAKAQGIEAYFLE 131 (142)
T ss_dssp ES----------CHHHHHHHHHTTCCEEECC
T ss_pred cC----------CHHHHHHHHHcCCEEEEec
Confidence 55 3367888889999998764
No 27
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=31.34 E-value=1.4e+02 Score=29.77 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCch----HHHHHHHHHH-cCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEE
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTEST----LAALLECISA-IKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSY 128 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~----~~~L~~l~~~-~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~ 128 (644)
|..+-+..+.+.++++|..+.+...+.. ...+..++.. .+++.|++.-+ .. . ...+.+.+.+.||++..+
T Consensus 18 f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~--~~--~-~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE--QY--V-APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC--SS--H-HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc--hh--h-HHHHHHHHHhCCCcEEEE
Confidence 5556677777888888999998765321 2334555554 68999888631 11 1 123445567889999988
Q ss_pred cCC
Q 006464 129 NGD 131 (644)
Q Consensus 129 ~~~ 131 (644)
+..
T Consensus 93 ~~~ 95 (350)
T 3h75_A 93 NSP 95 (350)
T ss_dssp ESC
T ss_pred cCC
Confidence 643
No 28
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=31.12 E-value=76 Score=30.26 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEEC--CchHHHHHHHHHHcCCcEEEEeccc---CchhHHHHHHHHHHhhhcCcEEEE
Q 006464 57 QSLSYLGQSLKSLGAELVLFKT--ESTLAALLECISAIKATKVVFNHLY---DPVSLVRDHSIKEKLVELGISVQS 127 (644)
Q Consensus 57 esL~dL~~~L~~lG~~L~v~~g--~~~~~~L~~l~~~~~~~~V~~~~~y---~p~~~~rD~~V~~~l~~~gV~v~~ 127 (644)
+.|+-..+..+++|++-+|+.. +.+...+.+.+ .++.-|+..|.+ .|.....+..+++.+++.|+++..
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 6666777888888998777653 34444444444 356666666655 355556677788889999999865
No 29
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=30.97 E-value=1.6e+02 Score=27.57 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEE-CCchHHHHHHHHHHc--CCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCC
Q 006464 57 QSLSYLGQSLKSLGAELVLFK-TESTLAALLECISAI--KATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGD 131 (644)
Q Consensus 57 esL~dL~~~L~~lG~~L~v~~-g~~~~~~L~~l~~~~--~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~ 131 (644)
+++.-|+..++..|.+++|.. ||..-.+|+.++.+. .+..|++++...+.+. .+.+++.|++.||+++.+..+
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e~--~~~v~~~~~~~gi~~~v~~~~ 106 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPET--YRFIDELTDKLKLNLKVYRAT 106 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHH--HHHHHHHHHHTTCEEEEEECS
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHHH--HHHHHHHHHHhCCcEEEEeCC
Confidence 556677777888887777654 444445677777664 4667777766543222 345888899999999887543
No 30
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=30.67 E-value=2.4e+02 Score=23.66 Aligned_cols=114 Identities=15% Similarity=-0.004 Sum_probs=61.0
Q ss_pred CCCCCCCHHHHHHHh-----CCCeEEEEEeCC--CccCccCCch-hhHH---HHHHHHHHHHHHHHhcCCcE---EEEEC
Q 006464 13 DLRIEDNPALAAAAR-----DGSVFPVYTWCP--KEEGQFYPGR-VSRW---WLKQSLSYLGQSLKSLGAEL---VLFKT 78 (644)
Q Consensus 13 DLRl~DN~AL~~A~~-----~~~vlpvfi~dP--~~~~~~~~~~-~~r~---FLlesL~dL~~~L~~lG~~L---~v~~g 78 (644)
|.--....||..|+. ...+..|+|+++ ..... .... .... ...++...|++-+++.|.+. .+..
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 87 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTG-LIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGS- 87 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCC-CEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEEEEE-
T ss_pred cCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhcc-ccccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEec-
Confidence 444445567776642 346888888733 11100 0000 0000 01123333444455567653 4444
Q ss_pred CchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEc
Q 006464 79 ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 79 ~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~ 129 (644)
+++...|.+.+++.+++-|+.-........ .-....+.+....++|..+.
T Consensus 88 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 88 GDLGQVLSDAIEQYDVDLLVTGHHQDFWSK-LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp ECHHHHHHHHHHHTTCCEEEEEECCCCHHH-HHHHHHHHHTTCCSEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCchhhh-hcchHHHHHhcCCCCEEEee
Confidence 467788999999999999887654222222 22334556667788887664
No 31
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=28.54 E-value=1.9e+02 Score=28.33 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchHH---HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLA---ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~~---~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+.+........ ...+.+.+.+++.|++.-. ++.. .+ .+.+.+.+.||++..++.
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~-~~~~--~~-~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI-DGTT--LS-DVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS-SGGG--GH-HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC-Cchh--HH-HHHHHHHHCCCCEEEECC
Confidence 555677778888999999998876532211 2223334468998887631 1111 11 233345678999998853
No 32
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.67 E-value=1.7e+02 Score=27.98 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchHH---HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLA---ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~~---~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+.+...+.... ...+.+.+.+++.|++.-. ++... . .+.+.+.+.||++..++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~-~~~~~--~-~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 22 FAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL-DDVYI--G-SAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS-CTTTT--H-HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC-ChHHH--H-HHHHHHHHcCCCEEEecC
Confidence 555677778888999999999876542221 2333344568998887532 12111 1 123345667999998854
Q ss_pred C
Q 006464 131 D 131 (644)
Q Consensus 131 ~ 131 (644)
.
T Consensus 98 ~ 98 (293)
T 3l6u_A 98 M 98 (293)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=27.20 E-value=2.7e+02 Score=26.39 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCch---HHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTEST---LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~---~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+.+...... ...+.+.+...+++.|++.-.. . +. ..+.+.+.||++..++.
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~-----~~-~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 21 FSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS-N-----PQ-TVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC-C-----HH-HHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC-c-----HH-HHHHHHHCCCCEEEEec
Confidence 5557777788899999999998765322 2234445556789998886321 1 22 33446778999998854
No 34
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=25.85 E-value=2.6e+02 Score=25.52 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=44.7
Q ss_pred HHHHHhcCCcEEEEECCchHHHHHHHHHHc--CCcEEEEecc-cCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCccc
Q 006464 63 GQSLKSLGAELVLFKTESTLAALLECISAI--KATKVVFNHL-YDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEI 139 (644)
Q Consensus 63 ~~~L~~lG~~L~v~~g~~~~~~L~~l~~~~--~~~~V~~~~~-y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i 139 (644)
.+.-.++|..|.++..+ ..-.|.+.+++. +++.|+.|-- |+-.+. ++++++...++++.+++-..++..+++
T Consensus 42 ~~~a~~~g~~~~~~QSN-~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~~~~P~VEVHiSNi~aRE~F 116 (153)
T 3lwz_A 42 EIQAQGMDVALSHLQSN-AEHALIDSIHQARGNTDFILINPAAFTHTSV----ALRDALLGVQIPFIEIHLSNVHAREPF 116 (153)
T ss_dssp HHHHHHTTEEEEEEECS-CHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHHHTCCEEEEESSCGGGSCGG
T ss_pred HHHHHHcCCEEEEEecC-CHHHHHHHHHHhhhcCceEEEccccceechH----HHHHHHHhcCCCEEEEEcCCccccchh
Confidence 33334589999998864 355566666542 5778999843 222333 244445556899999987766654444
No 35
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=25.53 E-value=2.5e+02 Score=27.03 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchHH--HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLA--ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~~--~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+++....+... ...+.+.+.+++.|++... ++. ... .+.+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~--~~~-~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 16 WFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP-DPK--LGS-AIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS-CGG--GHH-HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC-Cch--hhH-HHHHHHHHCCCcEEEeCC
Confidence 555677777888888999998876543222 1223334458998887631 121 111 223345678999998863
No 36
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=25.45 E-value=2.7e+02 Score=25.74 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=43.4
Q ss_pred HhcCCcEEEEECCchHHHHHHHHHH---cCCcEEEEecc-cCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCccc
Q 006464 67 KSLGAELVLFKTESTLAALLECISA---IKATKVVFNHL-YDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEI 139 (644)
Q Consensus 67 ~~lG~~L~v~~g~~~~~~L~~l~~~---~~~~~V~~~~~-y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i 139 (644)
.++|..|.++..+ ..-.|.+.+++ -+++.|+.|-- |+-.+. ++++++...++++.+++-..++..+++
T Consensus 55 ~~~g~~v~~~QSN-~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~F 126 (167)
T 3kip_A 55 KNNDSEVLVFQSN-TEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV----GIRDALLGTAIPFIEVHITNVHQREPF 126 (167)
T ss_dssp TCSSCEEEEEECS-CHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH----HHHHHHHHTTCCEEEEESSCGGGSCGG
T ss_pred ccCCcEEEEEecC-CHHHHHHHHHHhhhcCccEEEEccccceeccH----HHHHHHHhcCCCEEEEEcCCccccccc
Confidence 3478899998864 34556565543 35788999943 222333 344556667899999987777655444
No 37
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=25.21 E-value=2.4e+02 Score=25.25 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCcEE---EEECCchHHHHHHHHHHcC--CcEEEEecccCchh--HHHHHHHHHHhhhcCcEEEEE
Q 006464 57 QSLSYLGQSLKSLGAELV---LFKTESTLAALLECISAIK--ATKVVFNHLYDPVS--LVRDHSIKEKLVELGISVQSY 128 (644)
Q Consensus 57 esL~dL~~~L~~lG~~L~---v~~g~~~~~~L~~l~~~~~--~~~V~~~~~y~p~~--~~rD~~V~~~l~~~gV~v~~~ 128 (644)
+.|..--..|++.|+... +.. ++++..|.+.+.+++ ++.|+.....-..+ ..|| +..-++..||+|.-+
T Consensus 58 ~~l~~sl~aL~~~G~~a~~G~v~d-~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~D--wasrAr~~gvPVlhl 133 (138)
T 2iel_A 58 EEAAAAKRALEAQGIPVEEAKAGD-ISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLD--VHTQAERFGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEE-SSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTT--HHHHGGGGSSCEEEE
T ss_pred HHHHHHHHHHHHcCCcccccccCC-CChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhcc--HHHHHHhcCCCEEEE
Confidence 566666667788898765 333 467899999999999 99988774322223 3444 455555589998754
No 38
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=24.29 E-value=2.3e+02 Score=26.94 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEEC-----CchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEE
Q 006464 57 QSLSYLGQSLKSLGAELVLFKT-----ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQS 127 (644)
Q Consensus 57 esL~dL~~~L~~lG~~L~v~~g-----~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~ 127 (644)
+.+.++++.|++.|+.+..... .+......+++++.|+..|++.-. .... +.+.+.+++.||.+-.
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~~~---~~l~~~a~~~gv~l~~ 133 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--LSDW---DLVEKLSKQYNIKISV 133 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--GGGH---HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--HHHH---HHHHHHHHHhCCEEEE
Confidence 5678889999999999876642 123556678889999999998732 2111 3577788889998753
No 39
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=22.98 E-value=5.1e+02 Score=24.87 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=61.2
Q ss_pred CCCHHHHHHHh-----CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEE-EECCchHHHHHHHHH
Q 006464 17 EDNPALAAAAR-----DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVL-FKTESTLAALLECIS 90 (644)
Q Consensus 17 ~DN~AL~~A~~-----~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v-~~g~~~~~~L~~l~~ 90 (644)
....+|..|.. ...+..|+|.++.. -.+.++++.+.|++.|++..+ +..+++...|.+.++
T Consensus 182 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~ 248 (294)
T 3loq_A 182 WADRALEYAKFVVKKTGGELHIIHVSEDGD-------------KTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKRE 248 (294)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------CHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------HHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHH
Confidence 34445655542 23678888877632 124566777888888876432 223467888999999
Q ss_pred HcCCcEEEEecc-cCchhH-HHHHHHHHHhhhcCcEEEEEc
Q 006464 91 AIKATKVVFNHL-YDPVSL-VRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 91 ~~~~~~V~~~~~-y~p~~~-~rD~~V~~~l~~~gV~v~~~~ 129 (644)
+.+++-|+.-.. ...... -.-....+++....++|..+.
T Consensus 249 ~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 249 EINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred hcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 999998887532 222222 222234556667778887663
No 40
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=22.76 E-value=1.2e+02 Score=30.10 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=41.3
Q ss_pred cEEEEECCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEc
Q 006464 72 ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 72 ~L~v~~g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~ 129 (644)
+.++..| +..+..+++.-.+.-|+..+|++|.++.. -|-.+|.+.||++..+.
T Consensus 125 p~~lk~G---vneVTklVE~kKAqLVVIA~DVdPiElV~--fLPaLC~k~gVPY~iVk 177 (258)
T 3iz5_H 125 PIVVKYG---LNHVTYLIEQSKAQLVVIAHDVDPIELVV--WLPALCRKMEVPYCIVK 177 (258)
T ss_dssp CCCEEES---HHHHHHHHHTTCEEEEEEESCCSSTHHHH--HHHHHHTTTTCCEEEES
T ss_pred Cceeecc---cHHHHHHHHcCcceEEEEeCCCChHHHHh--HHHHHHHhcCCCeEEEC
Confidence 3555554 45667788888899999999999998764 47889999999987763
No 41
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=22.73 E-value=1.1e+02 Score=24.47 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEc
Q 006464 83 AALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 83 ~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~ 129 (644)
....+.++.-.+.-|+..+|.+| . .-..+...|.+.+|++..+.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~--~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP-I--LTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH-H--HHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH-H--HHHHHHHHHHHcCCCEEEEC
Confidence 34556677777888889998888 2 33458899999999998875
No 42
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.48 E-value=2.6e+02 Score=26.94 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCc--hHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTES--TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~--~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+++...++ ....+.+.+...+++.|++.-..... ...+.+.+.||++..++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 24 TFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 666777888899999999998876432 23456677777899998876321111 233445678999988753
No 43
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.39 E-value=1.7e+02 Score=28.50 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchH---HHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTL---AALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~---~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+.+....... ..+.+.+...+++.|++.-. ++... . .+.+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~--~-~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY-NGQVL--S-NVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS-STTSC--H-HHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC-Chhhh--H-HHHHHHHHCCCeEEEECC
Confidence 33455666778888899999987653211 12334445568998887632 12111 1 133345678999988753
No 44
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=22.24 E-value=2.4e+02 Score=26.14 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=45.2
Q ss_pred HHHHHHhcCCcEEEEECCchHHHHHHHHHH--cCCcEEEEecc-cCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcc
Q 006464 62 LGQSLKSLGAELVLFKTESTLAALLECISA--IKATKVVFNHL-YDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWE 138 (644)
Q Consensus 62 L~~~L~~lG~~L~v~~g~~~~~~L~~l~~~--~~~~~V~~~~~-y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~ 138 (644)
+++.-.++|..|.++..+ ..-.|.+.+++ -+++.|+.|-- |+-.+. +++++++..++++.+++-..++..++
T Consensus 62 l~~~a~~~G~~l~~~QSN-~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~ 136 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSD-SEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAREE 136 (172)
T ss_dssp HHHHHHHTTCEEEEEECS-CHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEESSCTTSSCG
T ss_pred HHHHHHHcCCEEEEEecC-CHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEcCCchhccc
Confidence 333344589999998864 34455555543 24677888843 222233 35566777899999998766665444
Q ss_pred c
Q 006464 139 I 139 (644)
Q Consensus 139 i 139 (644)
+
T Consensus 137 F 137 (172)
T 3n8k_A 137 F 137 (172)
T ss_dssp G
T ss_pred c
Confidence 4
No 45
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=21.96 E-value=1.5e+02 Score=28.18 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhhcCCCchHHHHHHHHhcc--cccC--CCCccchhhhhCC
Q 006464 335 PLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLL--DADL--ECDILGWQYISGS 399 (644)
Q Consensus 335 PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~Ll--D~D~--a~N~g~Wqw~AG~ 399 (644)
||+-+.+..|+...-+-|-.|+.++.||.. ++++=.+...+|...+. +.|. -.-.-|....+|.
T Consensus 20 pCM~~l~~~Lr~~~hL~h~gR~ql~lFLkg-iGls~ee~l~f~r~~F~k~~~d~F~K~y~Y~IrH~yG~ 87 (194)
T 3lgb_A 20 LCIKNLMEGLKKNHHLRYYGRQQLSLFLKG-IGLSADEALKFWSEAFTNMTMEKFNKEYRYSFRHNYGL 87 (194)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHSTTSCHHHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHh-CCCCHHHHHHHHHHHcccCChhhhccceeeeeeeecCC
Confidence 788899999999999999999999999854 78888888888877653 3221 1233477777775
No 46
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=21.42 E-value=2.6e+02 Score=25.57 Aligned_cols=43 Identities=7% Similarity=-0.044 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHcCCcEEEE
Q 006464 56 KQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVF 99 (644)
Q Consensus 56 lesL~dL~~~L~~lG~~L~v~~g~~~~~~L~~l~~~~~~~~V~~ 99 (644)
..++.++=+.|++.|.++.|..++. ...+..+++..|+..++.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~-~~~~~~~~~~~g~~~~~~ 136 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATN-SFVTAPIARAFGVQHLIA 136 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHcCCCEEEE
Confidence 4566677777888888888876543 445556677778776544
No 47
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.32 E-value=2.2e+02 Score=27.33 Aligned_cols=70 Identities=9% Similarity=0.089 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCch---HHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEc
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTEST---LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~---~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~ 129 (644)
|..+-+..+.+.++++|..+.+...+.. ...+.+.+...+++.|++.-... ...+.+.+.+.||++..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 22 FFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG------EHDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS------CCHHHHHSSCTTSCEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHhhccCCCEEEEe
Confidence 5556777888889999999998865322 22344555667899888763211 1123445667899998774
No 48
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=21.13 E-value=3.4e+02 Score=27.59 Aligned_cols=75 Identities=8% Similarity=0.085 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHc------CCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEE
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAI------KATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQS 127 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~~~L~~l~~~~------~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~ 127 (644)
+..+++.-|+..+++.+-.++.+.||..-.+|+.++.+. .+..|++++.+.+.+ -.+-+.++|++.||+++.
T Consensus 31 le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~e--t~~~v~~~~~~~gi~l~v 108 (325)
T 1zun_A 31 LEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQE--MYRFRDQMVEEMGLDLIT 108 (325)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHH--HHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHH--HHHHHHHHHHHcCCCEEE
Confidence 556788888888888764344444554445677777654 467788887665432 233577888899999988
Q ss_pred EcC
Q 006464 128 YNG 130 (644)
Q Consensus 128 ~~~ 130 (644)
+..
T Consensus 109 ~~~ 111 (325)
T 1zun_A 109 HIN 111 (325)
T ss_dssp ECC
T ss_pred EeC
Confidence 753
No 49
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.43 E-value=4.5e+02 Score=25.77 Aligned_cols=71 Identities=8% Similarity=0.151 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCch---HHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEc
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTEST---LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYN 129 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~---~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~ 129 (644)
|..+-+..+.+.++++|..+++...... ...+.+.+...+++.|++.-.... +..+.+.+++.||++..++
T Consensus 77 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 77 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-----VDEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-----HHHHHHHHHHCSSCEEEES
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----hHHHHHHHHcCCCCEEEEc
Confidence 5557777888899999999998765321 122344555678999887532111 1235666777899988774
No 50
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=20.24 E-value=3.2e+02 Score=25.81 Aligned_cols=70 Identities=9% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCch---HHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTEST---LAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~---~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+++...... ...+.+.+...+++.|++.- .. +..++..+.+.||++..++.
T Consensus 22 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~----~~---~~~~~~~l~~~~iPvV~~~~ 94 (277)
T 3e61_A 22 FFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA----FN---ENIIENTLTDHHIPFVFIDR 94 (277)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG----GG---HHHHHHHHHHC-CCEEEGGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec----CC---hHHHHHHHHcCCCCEEEEec
Confidence 5556777788889999999998765322 22344555567899988863 11 22233156678999988753
No 51
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=20.18 E-value=2.4e+02 Score=26.87 Aligned_cols=66 Identities=5% Similarity=-0.079 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEECC-----chHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEE
Q 006464 57 QSLSYLGQSLKSLGAELVLFKTE-----STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQS 127 (644)
Q Consensus 57 esL~dL~~~L~~lG~~L~v~~g~-----~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~ 127 (644)
+.++++++.|++.|+.+..+... .......+++++.|+..|+++-. . ..-+.+.+.+++.||.+-.
T Consensus 61 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~--~---~~l~~l~~~a~~~gv~l~l 131 (257)
T 3lmz_A 61 EQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN--Y---ELLPYVDKKVKEYDFHYAI 131 (257)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC--G---GGHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC--H---HHHHHHHHHHHHcCCEEEE
Confidence 55788899999999988765421 12445567788899999988632 1 1123477778888998653
Done!