Query 006464
Match_columns 644
No_of_seqs 259 out of 1667
Neff 6.9
Searched_HMMs 13730
Date Tue Mar 26 01:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006464.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006464hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u3da1 a.99.1.1 (A:198-497) C 100.0 5E-90 3.7E-94 721.4 22.7 296 194-489 4-299 (300)
2 d1np7a1 a.99.1.1 (A:205-483) C 100.0 1E-83 7.6E-88 667.1 22.1 265 205-476 7-274 (279)
3 d1dnpa1 a.99.1.1 (A:201-469) C 100.0 2E-82 1.5E-86 654.3 19.7 268 207-486 1-269 (269)
4 d1owla1 a.99.1.1 (A:205-475) C 100.0 7.1E-81 5.2E-85 643.6 19.7 268 206-486 2-269 (271)
5 d2j07a1 a.99.1.1 (A:172-405) C 100.0 1.7E-67 1.2E-71 531.9 20.5 220 207-437 5-224 (234)
6 d1u3da2 c.28.1.1 (A:13-197) Cr 100.0 2.4E-37 1.7E-41 300.0 21.8 160 5-164 1-160 (185)
7 d1owla2 c.28.1.1 (A:3-204) DNA 100.0 6.7E-34 4.9E-38 279.3 22.0 157 5-162 2-159 (202)
8 d1np7a2 c.28.1.1 (A:1-204) Cry 100.0 1.3E-33 9.3E-38 277.5 22.4 160 1-161 1-168 (204)
9 d1dnpa2 c.28.1.1 (A:1-200) DNA 100.0 2.9E-32 2.1E-36 267.2 19.7 154 5-160 2-160 (200)
10 d2j07a2 c.28.1.1 (A:2-171) DNA 100.0 4.6E-31 3.4E-35 252.0 16.4 144 5-160 2-145 (170)
11 d2d13a1 c.26.2.1 (A:2-227) Hyp 79.9 2.8 0.00021 38.8 8.9 97 20-126 18-119 (226)
12 d1n8va_ a.118.21.1 (A:) Chemos 40.1 2.3 0.00017 34.4 -0.5 18 416-433 83-100 (101)
13 d1vp8a_ c.49.1.2 (A:) Hypothet 36.7 23 0.0017 31.2 5.6 69 57-127 19-92 (190)
14 d8abpa_ c.93.1.1 (A:) L-arabin 30.5 84 0.0061 28.2 9.3 73 54-130 15-89 (305)
15 d2dria_ c.93.1.1 (A:) D-ribose 29.4 53 0.0038 28.9 7.3 75 54-132 15-92 (271)
16 d2z3va1 c.26.2.4 (A:2-136) Hyp 28.5 1.2E+02 0.009 23.4 10.4 28 72-100 78-105 (135)
17 d2c4va1 c.23.13.1 (A:1-158) Ty 22.7 1.3E+02 0.0097 25.3 8.1 74 57-135 25-108 (158)
No 1
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=5e-90 Score=721.41 Aligned_cols=296 Identities=68% Similarity=1.284 Sum_probs=275.6
Q ss_pred hhhhhhhccCCCCCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhc
Q 006464 194 SEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEEN 273 (644)
Q Consensus 194 ~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~ 273 (644)
.+..+++++...|.+||++|+++|++||++++..|.+.||.|+..+||+|||||+|||||||+|++.++.+......+..
T Consensus 4 ~~~~~~~~~~~~W~pGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~ 83 (300)
T d1u3da1 4 SEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGN 83 (300)
T ss_dssp HHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhHHHHhCcCCccHHHHHHHHHHHHHhhHHHHhhhcCCCCccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhcc
Confidence 44566766666799999999999999999999999999999998999999999999999999999999765443333333
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchH
Q 006464 274 FEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNR 353 (644)
Q Consensus 274 ~~~~~s~~~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr 353 (644)
.....+++.|++||+||||++++++++|.....+..+..+.++|..|++.|++|++|+||+||||||||||++|||||||
T Consensus 84 ~~~~~~~~~fi~eL~wRef~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr 163 (300)
T d1u3da1 84 EAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 163 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhccccccCHHHHHHHHhhcccchHHHHHHHHHHhhchhHHH
Confidence 33456678899999999999999999998877777777788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccc
Q 006464 354 IRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPEL 433 (644)
Q Consensus 354 ~Rm~VAsFLtk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL 433 (644)
||||||||||++|+||||.|++||+++|||||+++|++||||+||+|+|+.+|+|||||++|+++|||+|+|||||||||
T Consensus 164 ~Rm~vaSfl~~~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL 243 (300)
T d1u3da1 164 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 243 (300)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGG
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHhccchhhHHHHHHHHHhcccchhhccccccHHHHHHHhcCcchHHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHHHhHhhHH
Q 006464 434 ARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489 (644)
Q Consensus 434 ~~lp~~~Ih~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~~~~ 489 (644)
+++|.++||+||++|..+|+.+||.+|.+||.||||++++|++++++++++|+.++
T Consensus 244 ~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~~~~ 299 (300)
T d1u3da1 244 SRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEA 299 (300)
T ss_dssp TTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHhCCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999875
No 2
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=100.00 E-value=1e-83 Score=667.10 Aligned_cols=265 Identities=33% Similarity=0.597 Sum_probs=244.0
Q ss_pred CCCCchhhHHHHHHHHHH--HHhhhhhhcccC-CCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHH
Q 006464 205 GWSPGWSNADKVLTEFVE--QHLLRYYKNRQK-LGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVT 281 (644)
Q Consensus 205 ~~~gGe~~A~~~L~~Fl~--~~l~~Y~~~Rd~-~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~ 281 (644)
.|+|||++|+++|++||+ +++..|...||. ++.++||+|||||+|||||||+|++++++.. .......+.+
T Consensus 7 ~f~gGe~~Al~~L~~Fl~~~~~l~~Y~~~Rn~~~~~~~~S~LSPyL~~G~LS~rev~~~~~~~~------~~~~~~~~~~ 80 (279)
T d1np7a1 7 AFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------QERVSNDSTH 80 (279)
T ss_dssp CCCCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHH------HHTCCSHHHH
T ss_pred CCCChHHHHHHHHHHHHhcccchhhhhHhcCCCCCCCCccccCHHHcCCccCHHHHHHHHHHHh------hcccccchHH
Confidence 589999999999999995 469999999996 4678999999999999999999999987643 1233556788
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHH
Q 006464 282 FFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSF 361 (644)
Q Consensus 282 ~fireL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsF 361 (644)
.|+++|+||||+++++.++|...........+.++|..|++.|++|++|+||+||||||||||++|||||||+|||||||
T Consensus 81 ~~~~~l~WRef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDAamr~L~~tG~~Hn~~Rm~vasf 160 (279)
T d1np7a1 81 WLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASF 160 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhcchhhhhccccchhhhccccccccchHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 89999999999999999998765444444556789999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcc
Q 006464 362 AVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWI 441 (644)
Q Consensus 362 Ltk~L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~I 441 (644)
||++|+|||++|++||+++|||||+++|++||||+||+|+|+.+ +|+|||++|+++|||+|+|||||||||+++|+++|
T Consensus 161 l~~~l~i~W~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~-~r~~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~i 239 (279)
T d1np7a1 161 LCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKI 239 (279)
T ss_dssp HHHTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTTS-CCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGG
T ss_pred HHhcceeccccchHHHHHHHHhcChhhhhHHhhhhhhhcccccc-ccccCCcchHhhcCCCHHHHHHHhHhhhcCCHHhh
Confidence 99999999999999999999999999999999999999998887 68899999999999999999999999999999999
Q ss_pred cCCCCCChhHHHHcCCcCCCCCCcCCCChHHHHHH
Q 006464 442 HHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRER 476 (644)
Q Consensus 442 h~PW~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~ 476 (644)
|+||++|..+|+++||++|.|||+||||+++++++
T Consensus 240 h~pw~~~~~~~~~~~~~~~~~YP~Pivd~~~~~~~ 274 (279)
T d1np7a1 240 HQPWLLSATEQKQWGVQLGVDYPRPCVNFHQSVEA 274 (279)
T ss_dssp GCGGGCCHHHHHHTTCCBTTTBCCCSSCHHHHHHH
T ss_pred cChhhCCHHHHHHcCCCCCCCCCcccCCHHHHHHH
Confidence 99999999999999999999999999999998764
No 3
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2e-82 Score=654.34 Aligned_cols=268 Identities=35% Similarity=0.601 Sum_probs=244.8
Q ss_pred CCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHH
Q 006464 207 SPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286 (644)
Q Consensus 207 ~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fire 286 (644)
||||++|+++|++||+++|.+|.++||.|+.++||+||||||||+||||+|++++.+.. .......+...|++|
T Consensus 1 P~Ge~aAl~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~ISprev~~~v~~~~------~~~~~~~~~~~~l~e 74 (269)
T d1dnpa1 1 PVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQ------PQALDGGAGSVWLNE 74 (269)
T ss_dssp CCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSCCSCCCHHHHHHTSSCHHHHHHHHHHHC------GGGGGTSTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhHHHHHhHhcCCCCCCCCccCcHHHcCCcCCHHHHHHHHHHhh------hhccccccchhHHhh
Confidence 68999999999999999999999999999999999999999999999999999986532 112233456779999
Q ss_pred HHHHHHHHHHHHhCCCCCC-CccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Q 006464 287 MGLREYSRYLCFNFPFTHE-RPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365 (644)
Q Consensus 287 L~WREf~~~l~~~~P~~~~-~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~ 365 (644)
|+||||++++++++|.... .++......++|..+++.|++|++|+||+|+||||||||++|||||||+|||||||||+.
T Consensus 75 L~wRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~Tg~p~vDAamr~L~~tG~mhn~~Rm~~as~l~~~ 154 (269)
T d1dnpa1 75 LIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKD 154 (269)
T ss_dssp HHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhccchhhhhccccccccccccccChHHHhhccCCCcCchHHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 9999999999999876532 234444566789999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCC
Q 006464 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPW 445 (644)
Q Consensus 366 L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW 445 (644)
|+|||++|++||+++|||||+++|++||||+||+|+|+.+|+|||||++|+++|||+|+|||||||||+++|+++||+||
T Consensus 155 l~i~W~~g~~~f~~~llD~d~~~n~~~wq~~ag~g~~~~~~~r~~np~~q~~~~Dp~g~~ir~w~pel~~~p~~~ih~p~ 234 (269)
T d1dnpa1 155 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPW 234 (269)
T ss_dssp SCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHH
T ss_pred cccccchhHHHHHHHHHhcCcccCHHHHHhhhccCCCccccccccchHHHHHHhCCCcchHHHhChhhccCCHHhcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHHHhHh
Q 006464 446 DAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486 (644)
Q Consensus 446 ~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~ 486 (644)
+++. .+.++.+||+||||++++|++++++|+.+++
T Consensus 235 ~~~~------~~~~~~~Yp~pivd~~~~r~~~~~~~~~~~k 269 (269)
T d1dnpa1 235 KWAQ------KAGVTLDYPQPIVEHKEARVQTLAAYEAARK 269 (269)
T ss_dssp HHHH------TTTCCCSSCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred hcch------hhCcCCCCccccCCHHHHHHHHHHHHHHhhC
Confidence 8764 3567899999999999999999999998763
No 4
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00 E-value=7.1e-81 Score=643.61 Aligned_cols=268 Identities=33% Similarity=0.585 Sum_probs=244.9
Q ss_pred CCCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHH
Q 006464 206 WSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLR 285 (644)
Q Consensus 206 ~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fir 285 (644)
+.|||++|+++|++||+++|..|.+.||.|+.++||+|||||||||||+|+|++++...... ........+.+.|++
T Consensus 2 ~~pGE~~Al~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~LSPyL~fG~IS~R~v~~~~~~~~~~---~~~~~~~~~~~~f~~ 78 (271)
T d1owla1 2 VEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHAL---SRSDEARNSIRVWQQ 78 (271)
T ss_dssp SCSSHHHHHHHHHHHHHTGGGGHHHHTTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccCCHHHccCccCHHHHHHHHHHhhhh---ccccccccchHHhhh
Confidence 57899999999999999999999999999999999999999999999999999998764321 111123456778999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Q 006464 286 AMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKV 365 (644)
Q Consensus 286 eL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~ 365 (644)
||+||||+++++.++|......+......++|..+++.|++|++|+||+||||||||||++|||||||+|||||||||+.
T Consensus 79 eL~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~Rm~~as~l~~~ 158 (271)
T d1owla1 79 ELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKD 158 (271)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSCCSTGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhhhhhhcccchhhcccccchhhHHhhhcccccCchHHHHHHHhhcccCchhHHHHHHHHHHHHhh
Confidence 99999999999999998765555666677899999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCCCCcccCCC
Q 006464 366 LLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPW 445 (644)
Q Consensus 366 L~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp~~~Ih~PW 445 (644)
|+|||+.|++||+++|||||+++|++||||+||+|+|+.+ +|+|||++|++||||+|+|||||||||++||.++||+||
T Consensus 159 l~i~W~~g~~~f~~~liD~d~a~n~~~wqw~ag~g~d~~~-~r~~np~~q~~k~Dp~g~yir~w~Pel~~~~~~~i~~~~ 237 (271)
T d1owla1 159 LIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGE 237 (271)
T ss_dssp SCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTC
T ss_pred cccchhhhHHHHHHHHHhcCCCCCccceeeeeccCCCccc-cccchhhhhhhhcccHHHHHHHhChhhccCChHHhcCcc
Confidence 9999999999999999999999999999999999999876 899999999999999999999999999999999999999
Q ss_pred CCChhHHHHcCCcCCCCCCcCCCChHHHHHHHHHHHHHhHh
Q 006464 446 DAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486 (644)
Q Consensus 446 ~~p~~~~~~~g~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~ 486 (644)
.+|. .|.+||+|||||+.+|+++++++++++.
T Consensus 238 ~~~~---------~~~~Yp~pivd~~~~~~~~~~~~~~~k~ 269 (271)
T d1owla1 238 ITPI---------ERRGYPAPIVNHNLRQKQFKALYNQLKA 269 (271)
T ss_dssp CCHH---------HHTTSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cCcc---------ccCCCCccccCHHHHHHHHHHHHHHHhh
Confidence 8764 3679999999999999999999998863
No 5
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.7e-67 Score=531.89 Aligned_cols=220 Identities=40% Similarity=0.691 Sum_probs=208.0
Q ss_pred CCchhhHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHHHHHhhhccCCcchHHHHHHH
Q 006464 207 SPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRA 286 (644)
Q Consensus 207 ~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fire 286 (644)
++||++|+++|++||+++|..|.+.||.|..++||+||||||||+||||+|++++..+ ..++.+.|++|
T Consensus 5 ~pGe~~Al~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~LSPyL~~G~LS~r~v~~~~~~~-----------~~~~~~~~~~e 73 (234)
T d2j07a1 5 EPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPRLAAWEAERR-----------GGEGARKWVAE 73 (234)
T ss_dssp CCSHHHHHHHHHHHHHHTGGGHHHHTTCTTCTTSCCCHHHHHTTSSCHHHHHHHHHHH-----------CSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCcccCHHHccCCCcHHHHHHHHhhh-----------cchhhHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999988542 23567889999
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccccCCCCCCCChhhHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 006464 287 MGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVL 366 (644)
Q Consensus 287 L~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~f~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~VAsFLtk~L 366 (644)
|+||||+++.++++|.+...+.....+...|..+++.+++|++|+||+|+||||||||++||||||++||||||||++.|
T Consensus 74 l~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Tg~~~~da~mr~L~~tG~~Hn~~Rm~~a~~~~~~l 153 (234)
T d2j07a1 74 LLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHL 153 (234)
T ss_dssp HHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhhhhhcchhhhccccccccCHHHHHHhhccccCchHHHHHHHHHHhhchHhHHHHHHHHHHHHhhc
Confidence 99999999999999987766666666778899999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcccccCCCCccchhhhhCCCCCCCCcccccCccccccccCCcchhhhhccccccCCC
Q 006464 367 LLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMP 437 (644)
Q Consensus 367 ~idWr~G~~~F~~~LlD~D~a~N~g~Wqw~AG~g~d~~~~~RifNP~~q~~k~Dp~G~yIrrWvPEL~~lp 437 (644)
++||++|++||+++|||||+++|++||||+||+|+|++||+|+|||++|++||||+|+|||||||||+++|
T Consensus 154 ~~~w~~~~~~f~~~liD~d~~~n~~~w~~~ag~g~~~~~~~r~~n~~~~~~k~Dp~g~yi~~w~Pel~~~~ 224 (234)
T d2j07a1 154 LLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA 224 (234)
T ss_dssp CCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHHHHHHSTTSHHHHHHCTTCSSSS
T ss_pred cccHHHHHHHHHHHhhcCCcccchhhhhhhhccCCCCCCcccccCHHHHHHHhCCCchHHHHHCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988
No 6
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=2.4e-37 Score=300.01 Aligned_cols=160 Identities=55% Similarity=1.081 Sum_probs=150.3
Q ss_pred cEEEEecCCCCCCCCHHHHHHHhCCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHH
Q 006464 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAA 84 (644)
Q Consensus 5 ~~LvWFRrDLRl~DN~AL~~A~~~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~~ 84 (644)
++|||||||||++||+||.+|++.++|+||||++|..++....+..+.+||++||.+|+++|+++|+.|+++.++++..+
T Consensus 1 ~SlvWFR~DLRl~DN~aL~~A~~~~~vi~vfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~g~~L~v~~~g~~~~~ 80 (185)
T d1u3da2 1 CSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVAS 80 (185)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH
T ss_pred CEEEEECCCCCcccHHHHHHHHhCCCEEEEEEEcchHhcccChHHHHHHHHHHHHHHHHHHHHhcCCcceEeeccchHHH
Confidence 58999999999999999999998889999999999987766667788889999999999999999999999876678889
Q ss_pred HHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhccCCC
Q 006464 85 LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQMEP 164 (644)
Q Consensus 85 L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~~~~p 164 (644)
|.++++++++++|+++++|+++++.||++|+++|++.||.++.|++++|++|+++.+..|++|++|++||++|+..+..+
T Consensus 81 l~~l~~~~~i~~v~~n~~~~~~e~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~y~vFTpF~k~~~~~~~~~ 160 (185)
T d1u3da2 81 LLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDP 160 (185)
T ss_dssp HHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHTCSSCC
T ss_pred HHHHHHhcCCceEEEeccccHHHHHHHHHHHHHHHHcCCceeecCCceecCccccccCCCCCCcccHHHHHHHHhCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876654
No 7
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00 E-value=6.7e-34 Score=279.27 Aligned_cols=157 Identities=22% Similarity=0.361 Sum_probs=145.5
Q ss_pred cEEEEecCCCCCCCCHHHHHHHh-CCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHH
Q 006464 5 RTIVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLA 83 (644)
Q Consensus 5 ~~LvWFRrDLRl~DN~AL~~A~~-~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~ 83 (644)
.+|||||||||++||+||.+|++ .++|+||||+||..++....+..+.+||++||.+|+++|+++|++|+|+.| ++.+
T Consensus 2 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~v~~vyi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~i~~G-~~~~ 80 (202)
T d1owla2 2 PILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQG-DPQH 80 (202)
T ss_dssp CEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEES-CHHH
T ss_pred CEEEEECCCCccchHHHHHHHHhcCCcEEEEEEEcchHhcchhhhHHHHHHHHHHHHHHHHhhhccccceEEEEe-eeec
Confidence 58999999999999999999986 458999999999877655567777789999999999999999999999986 5688
Q ss_pred HHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhccC
Q 006464 84 ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM 162 (644)
Q Consensus 84 ~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~~~ 162 (644)
+|.++++++++++|+++++|++++++||..|++.|++.||.++.|++++|++|+++.+..|.+|++|++|++++.+...
T Consensus 81 ~l~~l~~~~~i~~v~~~~~~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~L~~p~~v~~~~g~~~~vFTpF~k~~~~~~~ 159 (202)
T d1owla2 81 LIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK 159 (202)
T ss_dssp HHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHHSCC
T ss_pred cchhhccccccceeEEeeeccchhhhHHHHHhhhhhhccccccccccccccCcccccCCCCCchhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999998889999999999999988653
No 8
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=100.00 E-value=1.3e-33 Score=277.51 Aligned_cols=160 Identities=23% Similarity=0.370 Sum_probs=145.7
Q ss_pred CCC--CcEEEEecCCCCCCCCHHHHHHHhCC-CeEEEEEeCCCccCcc-----CCchhhHHHHHHHHHHHHHHHHhcCCc
Q 006464 1 MGG--NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQF-----YPGRVSRWWLKQSLSYLGQSLKSLGAE 72 (644)
Q Consensus 1 m~~--~~~LvWFRrDLRl~DN~AL~~A~~~~-~vlpvfi~dP~~~~~~-----~~~~~~r~FLlesL~dL~~~L~~lG~~ 72 (644)
|.+ .++|||||||||++||+||.+|++.+ +|+||||+||..+... ..|..+.+||++||.+|+++|+++|++
T Consensus 1 m~~~p~~~lvWfr~DLRl~DN~aL~~A~~~~~~vi~vyi~dp~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~ 80 (204)
T d1np7a2 1 MKHVPPTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNK 80 (204)
T ss_dssp CCCCCCEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcEEEEeCCCCccccHHHHHHHHhcCCcEEEEEEECchHhcCcccccccccHHHHHHHHHHHHHHHHHHHhccch
Confidence 553 67899999999999999999999876 7999999999876432 236667789999999999999999999
Q ss_pred EEEEECCchHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHH
Q 006464 73 LVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDA 152 (644)
Q Consensus 73 L~v~~g~~~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~ 152 (644)
|+|+.| ++.++|.+++++++|++|+++++|++++..||++|.+.|++.||.++.|++++|++|+++....|++|++|++
T Consensus 81 L~v~~G-~~~~~l~~l~~~~~i~~V~~n~~~~~~e~~rd~~v~~~l~~~~i~~~~~~~~~L~~p~~l~~~~~~~~~vFTp 159 (204)
T d1np7a2 81 LLVTTG-LPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTK 159 (204)
T ss_dssp EEEEES-CHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHH
T ss_pred hhhhhh-hhHHHHHHHHHHhhhhheeeeccccHHHHHHHHHHhhhhccceeeeEeccCccccChhhccCCCCCCCccchH
Confidence 999986 5788999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHhcc
Q 006464 153 YWDKCLQMQ 161 (644)
Q Consensus 153 f~~~~~~~~ 161 (644)
|++++....
T Consensus 160 Frk~~e~~~ 168 (204)
T d1np7a2 160 FRKDIEKKK 168 (204)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhcc
Confidence 999997654
No 9
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=99.98 E-value=2.9e-32 Score=267.16 Aligned_cols=154 Identities=21% Similarity=0.382 Sum_probs=140.0
Q ss_pred cEEEEecCCCCCCCCHHHHHHHhCC--CeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCc--
Q 006464 5 RTIVWFRRDLRIEDNPALAAAARDG--SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTES-- 80 (644)
Q Consensus 5 ~~LvWFRrDLRl~DN~AL~~A~~~~--~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~-- 80 (644)
++|||||||||++||+||.+|++.+ .|+||||+||..++....+..+.+||.+||.+|+++|+++|++|+|+.|+.
T Consensus 2 t~LvWfRrDLRl~DN~aL~~A~~~~~~~v~~vyi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~ 81 (200)
T d1dnpa2 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 81 (200)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHH
T ss_pred cEEEEeCCCCccccHHHHHHHHHhCCCcEEEEEEEcchhhcccCcchhhhhhHHHHHHHHHhhhhhccceeEEEEecccc
Confidence 6899999999999999999998654 599999999987665556777778999999999999999999999998753
Q ss_pred -hHHHHHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHh
Q 006464 81 -TLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ 159 (644)
Q Consensus 81 -~~~~L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~ 159 (644)
+...|.+++++++|++|+++++|+++++.||++|+++| .||.++.+++++|++|++|.+..|.+|++|++|+++|+.
T Consensus 82 ~~~~~l~~l~~~~~i~~v~~n~~~~~~~~~rd~~v~~~l--~~i~~~~~~~~~L~~p~~v~~~~g~~y~VFTpF~k~~~~ 159 (200)
T d1dnpa2 82 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK 159 (200)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHC--TTSEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHHH
T ss_pred cchhHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHh--hhhcccccCceeeccccccccCCCCCCccCCHHHHHHHH
Confidence 56678899999999999999999999999999999999 489999999999999999999999999999999999876
Q ss_pred c
Q 006464 160 M 160 (644)
Q Consensus 160 ~ 160 (644)
.
T Consensus 160 ~ 160 (200)
T d1dnpa2 160 R 160 (200)
T ss_dssp H
T ss_pred h
Confidence 4
No 10
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=4.6e-31 Score=252.04 Aligned_cols=144 Identities=22% Similarity=0.308 Sum_probs=129.8
Q ss_pred cEEEEecCCCCCCCCHHHHHHHhCCCeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHH
Q 006464 5 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAA 84 (644)
Q Consensus 5 ~~LvWFRrDLRl~DN~AL~~A~~~~~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~~ 84 (644)
.+|||||||||++||+||.+|++.++|+||||+||..++ .+..+++||++||.+|+++|+++|++|+|++| ++..+
T Consensus 2 p~l~Wfr~DLRl~Dn~aL~~A~~~~~vi~vfi~d~~~~~---~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~G-~~~~~ 77 (170)
T d2j07a2 2 PLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK---TTPRRRAWFLENVRALREAYRARGGALWVLEG-LPWEK 77 (170)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTSCEEEEEEECHHHHS---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEES-CHHHH
T ss_pred CEEEEECCCCcccchHHHHHHHhcCCEEEEEEEecccch---hhHHHHHHHHHHHHHHHHhhhccccchhhhhh-hHHHH
Confidence 589999999999999999999988899999999997543 35667789999999999999999999999986 67889
Q ss_pred HHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcCCeeecCcccccccCCcccchHHHHHHHHhc
Q 006464 85 LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQM 160 (644)
Q Consensus 85 L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~~~L~~p~~i~~~~g~~~~tf~~f~~~~~~~ 160 (644)
|.+++++++|++|++|++|+|+++.||++|++.+. +++++|++|+.+....|++|++|++|+++|...
T Consensus 78 l~~l~~~~~i~~V~~n~~~~~~~~~rd~~v~~~l~--------~~~~~l~~p~~v~~~~~~~y~VFTpF~k~~~~~ 145 (170)
T d2j07a2 78 VPEAARRLKAKAVYALTSHTPYGRYRDGRVREALP--------VPLHLLPAPHLLPPDLPRAYRVYTPFSRLYRGA 145 (170)
T ss_dssp HHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCS--------SCEEEECCCCSSCTTCSSCCSSHHHHHTTCCCC
T ss_pred HHHHHHHhhhhHHHhhccchhhhhHHHHHHHhhhc--------cCceeecccCeeeCCcCCCCCccCHHHHHHhcc
Confidence 99999999999999999999999999999998763 456778899999888899999999999998553
No 11
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=79.90 E-value=2.8 Score=38.85 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHHHHhCC-CeEEEEEeCCCccCccCCchhhHHHHHHHHHHHHHHHHhcCCcEEEEEC----CchHHHHHHHHHHcCC
Q 006464 20 PALAAAARDG-SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKT----ESTLAALLECISAIKA 94 (644)
Q Consensus 20 ~AL~~A~~~~-~vlpvfi~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g----~~~~~~L~~l~~~~~~ 94 (644)
-||+.|.+.| .|..++..-|.....+..+.. .+.-++.+-+++|+||+.... ++....+..++++.++
T Consensus 18 lAl~~a~~~G~eV~~L~t~~~~~~~s~~~h~~-------~~~ll~~qAealgiPl~~~~~~~~~e~~~~~l~~~l~~~~v 90 (226)
T d2d13a1 18 YALYWALKSGLRVRYLVSMVSENEESYMYHTP-------NVELTSLQARALGIPIIKGFTKGEKEKEVEDLKNVLEGLKV 90 (226)
T ss_dssp HHHHHHHHTTCEEEEEEEEECCC----------------CCTTHHHHHHHHTCCEEEEEC--CTTSHHHHHHHHHHTBCC
T ss_pred HHHHHHHHcCCeeEEEEEEecCCCCcCcccCC-------CHHHHHHHHHhcCCCceEEecCCcchHHHHHHHHHHHhcCc
Confidence 5777888888 577777776643221111111 112345555778999987653 2446677788899999
Q ss_pred cEEEEecccCchhHHHHHHHHHHhhhcCcEEE
Q 006464 95 TKVVFNHLYDPVSLVRDHSIKEKLVELGISVQ 126 (644)
Q Consensus 95 ~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~ 126 (644)
+.|++-.-...+ .|+ .+.+.|.+.|+...
T Consensus 91 ~~vv~Gdi~~~~--~r~-r~e~~c~~~gl~~~ 119 (226)
T d2d13a1 91 DGIVAGALASRY--QKE-RIENVARELGLKVY 119 (226)
T ss_dssp SEEECCCSSCHH--HHH-HHHHHHHHHTCEEE
T ss_pred cceEecceecHH--HHH-HHHhhHHhcCcEEE
Confidence 999886433322 333 47777888888875
No 12
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=40.08 E-value=2.3 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=13.9
Q ss_pred ccccCCcchhhhhccccc
Q 006464 416 GSKFDPEGEYVRQWLPEL 433 (644)
Q Consensus 416 ~~k~Dp~G~yIrrWvPEL 433 (644)
-.+|||+|.|.++|--++
T Consensus 83 ~~KYDP~g~y~~k~~~~~ 100 (101)
T d1n8va_ 83 TAKYDPTGNWRKKYEDRA 100 (101)
T ss_dssp HHHHCTTCSSHHHHHHHH
T ss_pred HHHHCcCchHHHHHHHHh
Confidence 468899999988886554
No 13
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=36.75 E-value=23 Score=31.21 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEC--CchHHHHHHHHHHcCCcEEEEeccc---CchhHHHHHHHHHHhhhcCcEEEE
Q 006464 57 QSLSYLGQSLKSLGAELVLFKT--ESTLAALLECISAIKATKVVFNHLY---DPVSLVRDHSIKEKLVELGISVQS 127 (644)
Q Consensus 57 esL~dL~~~L~~lG~~L~v~~g--~~~~~~L~~l~~~~~~~~V~~~~~y---~p~~~~rD~~V~~~l~~~gV~v~~ 127 (644)
+.|+--.+..+++|++-+|+.. +.+...+++.++ +..-|+..|.+ .|.....|..+++.+++.|+.+.+
T Consensus 19 ~~l~~a~~rA~Elgi~~iVvAStsG~TA~~~~e~~~--g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 92 (190)
T d1vp8a_ 19 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAE--GLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 92 (190)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCT--TCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHhc--CCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCEEEE
Confidence 4555566777889987777653 445555555553 66767777766 455667778888999999999865
No 14
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=30.49 E-value=84 Score=28.19 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchHHHH--HHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLAAL--LECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~~~L--~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|+.+-+...++..+++|..+++...++....+ .+-+-..+++.|+..- +....-+ .+.+.+.+.||+|..++.
T Consensus 15 ~~~~~~~g~~~aa~~~G~~~i~~~~~d~~~q~~~i~~li~~~vDgiIi~~---~~~~~~~-~~~~~a~~~giPVV~~d~ 89 (305)
T d8abpa_ 15 WFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICT---PDPKLGS-AIVAKARGYDMKVIAVDD 89 (305)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEEC---SCGGGHH-HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcc---ccccccH-HHHHHHHhcCCCEEEEcC
Confidence 55677777888889999999776554432221 2223356899988762 2222222 344556788999999854
No 15
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=29.44 E-value=53 Score=28.90 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchHHH---HHHHHHHcCCcEEEEecccCchhHHHHHHHHHHhhhcCcEEEEEcC
Q 006464 54 WLKQSLSYLGQSLKSLGAELVLFKTESTLAA---LLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNG 130 (644)
Q Consensus 54 FLlesL~dL~~~L~~lG~~L~v~~g~~~~~~---L~~l~~~~~~~~V~~~~~y~p~~~~rD~~V~~~l~~~gV~v~~~~~ 130 (644)
|..+-+..+.+.++++|..+.+..++..... .++-+...++..+++.-. ++... . ...+.+++.||++..++.
T Consensus 15 f~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~-~~~~~--~-~~~~~~~~~~ipvV~~~~ 90 (271)
T d2dria_ 15 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT-DSDAV--G-NAVKMANQANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS-STTTT--H-HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCcccccccc-cccch--H-HHHHHHhhcceeEEEecc
Confidence 6567777788899999999988765322221 222223457777777631 11111 1 133446778999998875
Q ss_pred Ce
Q 006464 131 DL 132 (644)
Q Consensus 131 ~~ 132 (644)
..
T Consensus 91 ~~ 92 (271)
T d2dria_ 91 QA 92 (271)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 16
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=28.45 E-value=1.2e+02 Score=23.40 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=21.2
Q ss_pred cEEEEECCchHHHHHHHHHHcCCcEEEEe
Q 006464 72 ELVLFKTESTLAALLECISAIKATKVVFN 100 (644)
Q Consensus 72 ~L~v~~g~~~~~~L~~l~~~~~~~~V~~~ 100 (644)
..++.. +++.+.|.+.+++.+++-|+.-
T Consensus 78 ~~~~~~-g~~~~~I~~~a~~~~~dliV~G 105 (135)
T d2z3va1 78 DALLLE-GVPAEAILQAARAEKADLIVMG 105 (135)
T ss_dssp GEEEEE-SCHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEc-CChHHHHHHHhhhhheeeEEec
Confidence 345544 4677889999999999988776
No 17
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]}
Probab=22.74 E-value=1.3e+02 Score=25.35 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH----h--cCCcEEEEECCchHHHHHHHHHHc---CCcEEEEecc-cCchhHHHHHHHHHHhhhcCcEEE
Q 006464 57 QSLSYLGQSLK----S--LGAELVLFKTESTLAALLECISAI---KATKVVFNHL-YDPVSLVRDHSIKEKLVELGISVQ 126 (644)
Q Consensus 57 esL~dL~~~L~----~--lG~~L~v~~g~~~~~~L~~l~~~~---~~~~V~~~~~-y~p~~~~rD~~V~~~l~~~gV~v~ 126 (644)
.+|.++.+.|+ + +|+.|.++.... ...+.+.+++. +++.|+.|-. |+-++. .+++.++..++++.
T Consensus 25 ~TL~~i~~~~~~~a~~~~l~v~l~~~QSN~-EgelId~I~~a~~~~~dgiIINPga~ThtS~----al~DAl~~~~~P~i 99 (158)
T d2c4va1 25 VTLDQIHEIMQTFVKQGNLDVELEFFQTNF-EGEIIDKIQESVGSDYEGIIINPGAFSHTSI----AIADAIMLAGKPVI 99 (158)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCEEEEEECSC-HHHHHHHHHHTTSTTEEEEEEECGGGGGTCH----HHHHHHHHSSSCEE
T ss_pred cCHHHHHHHHHHHHHHcCCceehhhHHHhH-HHHHHHHHHHHhCCCcceEEecchhheeeee----ehHHHHHhcCCCEE
Confidence 44555555553 3 678998888643 55666777642 5678999942 222222 35566667789999
Q ss_pred EEcCCeeec
Q 006464 127 SYNGDLLYE 135 (644)
Q Consensus 127 ~~~~~~L~~ 135 (644)
+++=..++.
T Consensus 100 EVHlSNi~~ 108 (158)
T d2c4va1 100 EVHLTNIQA 108 (158)
T ss_dssp EEESSCTTS
T ss_pred EEEccCccc
Confidence 886444443
Done!