Query 006465
Match_columns 644
No_of_seqs 87 out of 89
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 23:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 2.3E-92 5E-97 739.4 22.8 347 4-435 14-375 (375)
2 KOG2092 Uncharacterized conser 100.0 1.9E-59 4.1E-64 478.4 0.7 368 233-625 1-374 (381)
3 KOG2092 Uncharacterized conser 100.0 1.9E-44 4.2E-49 368.6 7.3 318 5-405 55-381 (381)
4 COG4168 SapB ABC-type antimicr 33.3 3E+02 0.0066 29.9 9.5 113 374-502 76-213 (321)
5 PF04021 Class_IIIsignal: Clas 32.9 65 0.0014 23.5 3.3 24 21-44 2-25 (28)
6 KOG4220 Muscarinic acetylcholi 28.6 1E+03 0.022 27.9 13.1 124 449-578 184-313 (503)
7 KOG4438 Centromere-associated 26.8 92 0.002 35.5 4.8 42 6-47 385-431 (446)
8 PF00317 Ribonuc_red_lgN: Ribo 25.0 62 0.0013 28.0 2.5 18 2-19 27-44 (83)
9 PF12679 ABC2_membrane_2: ABC- 23.4 7.3E+02 0.016 24.5 10.9 28 394-421 172-199 (277)
10 PF12238 MSA-2c: Merozoite sur 19.6 2.4E+02 0.0053 29.3 5.8 26 449-474 93-119 (205)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=2.3e-92 Score=739.42 Aligned_cols=347 Identities=27% Similarity=0.454 Sum_probs=260.0
Q ss_pred cchhHHHHHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCccccccccccCccceEEEEEccCCC--Cc
Q 006465 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGM--DA 80 (644)
Q Consensus 4 ~~~firv~~~~a~~~~~~vR~~iEyl~L~~Ai~~f~vL~~~H~~f~-~~pgC~~~~~~i~wpr~gilqVeI~~~g~--~~ 80 (644)
|-+|+|+|.+|||++||++||+|||++|++||++|++|+|||++|+ +|.+|++|++| +|||+||+||||++|.. ++
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~-~wpR~GIlRveI~~n~~~~~i 92 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKD-DWPRDGILRVEIVRNLESKNI 92 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhc-cccccceeEEEEecCCCccch
Confidence 4589999999999999999999999999999999999999999999 77799999999 59999999999999876 33
Q ss_pred CcchhhhhhhhhhhhhccccccchhhhhhccCCCcccccccCcCCCCCcCCCccccccccccccccccccChhhhhhhcc
Q 006465 81 DGLTFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAI 160 (644)
Q Consensus 81 dk~~~~~~k~~~~~lg~~~r~gkl~~~f~k~~~~~~e~~~~~~~~~~~~~~~~d~~~k~~~ee~~~~~~~s~kE~~ka~~ 160 (644)
++....+++...+ .. +++.-.+|++.+.++ . ..|......
T Consensus 93 ~~~~~~ee~L~r~----~q----------ep~s~siEpsTteee-----------------------l---t~el~~~~s 132 (375)
T PF09746_consen 93 FQQYYDEESLLRN----VQ----------EPGSYSIEPSTTEEE-----------------------L---TTELFQNSS 132 (375)
T ss_pred hhhhhhhcchhhh----hc----------cccccCcCccccchh-----------------------h---hHhhhhccc
Confidence 3322222221111 00 000000111110000 0 001111111
Q ss_pred eeccccccchhHHHHHHHHHHHHHHHhhhhhhccccccCccchhhccccccchhhhHHHhh-------hccccCCCcEEE
Q 006465 161 IHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLE-------NRTKAFEPTYLY 233 (644)
Q Consensus 161 ~~~~~k~~~~~S~~w~~~~qi~~~~~klw~i~g~~~~ld~pk~~~~l~~D~~~s~~V~~~e-------~~~k~~Ep~YeY 233 (644)
..++.... +..| .|+.......|+.+.....+++ +..+..||+|||
T Consensus 133 ~kl~~~~~---~~~~------------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~veY 185 (375)
T PF09746_consen 133 IKLESDLE---PSFL------------------------SSDSSLNNTFDEDNISDTFDFEEIMQLKNKVWPQDEYIVEY 185 (375)
T ss_pred cccccccc---cccc------------------------CCcccccccccccccccccccchhhcccccCCcccceeEEe
Confidence 11111100 0000 1111111112222211112222 222346778899
Q ss_pred eccceeeccChhcccccCceEEEEEeCC-CCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEecccCeEEe
Q 006465 234 TMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYNCQTKEFYN 308 (644)
Q Consensus 234 SlEyGfLrLs~~aR~r~nIpt~~VtLd~-~~~CFGd~~~rlLL~~FlGYDdILmNSlk----~~~gkGYLrN~~TgE~Yr 308 (644)
|+||||||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+| +++|||||||++||||||
T Consensus 186 sleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y~ 265 (375)
T PF09746_consen 186 SLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHYR 265 (375)
T ss_pred ehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeeccccccee
Confidence 9999999999999999999999999996 99999999999999999999999999999 478999999999999999
Q ss_pred eccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhh
Q 006465 309 LSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLV 388 (644)
Q Consensus 309 lv~~~~~~~~~ar~~sylv~k~~VlimsLFvfF~fT~sVSflLReSq~rif~FiV~L~~~~r~~~P~a~Li~~hVi~sLV 388 (644)
|+++|.. +| ++|++ ++|+|++||++|||||||||||||+||||++||++++.|++ .|++..|.
T Consensus 266 fv~~~~~----~r-~sy~~--------a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~----~p~a~llt 328 (375)
T PF09746_consen 266 FVSMWWM----AR-SSYLA--------AFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIF----FPAAPLLT 328 (375)
T ss_pred hhhhhhh----hc-cHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccc----cccceeee
Confidence 9998732 33 57874 67888999999999999999999999999999998887643 35666667
Q ss_pred hhHhHhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeccccccc
Q 006465 389 FVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMK 435 (644)
Q Consensus 389 FVpvmIGM~afMsEFF~D~~lAFyViliVWladqf~aI~~RT~iSkr 435 (644)
+||+||||+|||+|||||+++||||||+||+|||||+|||||++|||
T Consensus 329 ~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r 375 (375)
T PF09746_consen 329 VILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR 375 (375)
T ss_pred eehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence 78888899999999999999999999999999999999999999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-59 Score=478.37 Aligned_cols=368 Identities=57% Similarity=0.870 Sum_probs=319.6
Q ss_pred EeccceeeccChhcccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEEeeccc
Q 006465 233 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 312 (644)
Q Consensus 233 YSlEyGfLrLs~~aR~r~nIpt~~VtLd~~~~CFGd~~~rlLL~~FlGYDdILmNSlk~~~gkGYLrN~~TgE~Yrlv~~ 312 (644)
|.+|+|+..+|++++-+||| +-++.+.++++|||++|++++++.++||||+|++++.++-+.||.| .+|.|.-|
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frr---- 74 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRR---- 74 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHh----
Confidence 57899999999999999999 6889999999999999999999999999999999999999999999 88888744
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhhHh
Q 006465 313 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 392 (644)
Q Consensus 313 ~~~~~~~ar~~sylv~k~~VlimsLFvfF~fT~sVSflLReSq~rif~FiV~L~~~~r~~~P~a~Li~~hVi~sLVFVpv 392 (644)
-|++++-++.|++.||+++|+++|++ +++++++.||+++.||..|.|++++|..++.|++.++.+|++.++||+|+
T Consensus 75 --l~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 75 --LPEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 46777889999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHH--HHHHHhhheeeeccccchhHHHHHHHHH
Q 006465 393 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFL--LYFLVFHIYFFSYAYGFSYMALGTAAAF 470 (644)
Q Consensus 393 mIGM~afMsEFF~D~~lAFyViliVWladqf~aI~~RT~iSkrywpRfFy--LYf~~Fh~Yfysy~ygFSyLAL~ts~lF 470 (644)
+||+..+++||++|+..+||+++.+|+|+.|.+.+.||+++|+|+||+|+ +|.+.||+|||+|.||++|++..++..+
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~veyt~~yg 230 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEYTTAYG 230 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHH-HHHHHhhhCCCcccccccccccceeeeecccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006465 471 VQHLILYFWNHFEVPALQRFIQ-NRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPP 549 (644)
Q Consensus 471 i~HsMLyF~h~fElPal~r~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (644)
++|+.+|||+|+|+|+++++++ +||...+|+|.+++++++++++|+|++ +|....+..+.+..- ....+..-...+
T Consensus 231 ~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t-l~~~a~N~~~~G~lh--n~q~~ehy~Fva 307 (381)
T KOG2092|consen 231 MLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT-LNRTARNRTPSGPLH--NTQNTEHYSFVA 307 (381)
T ss_pred HHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHhccCCCCccc--cccccceEEEee
Confidence 9999999999999999999999 788899999999999999999999999 776555443322211 112233333344
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCchhhH--HHHHHhcCCCccchhhhhhhhhhhhcc
Q 006465 550 TNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQ-QPETGPNPGSMNSFSS--LLLWILGGASSEGLNSFLSMFRDVREQ 625 (644)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (644)
||.|+.. -.+.......| ..|..+-+| +. +.|-+|+| |++|+||||+++|++++++||+|+++.
T Consensus 308 -~~~g~as---Yl~a~a~m~if--T~~~smllrysh------hqifvFi~dll~m~el~~a~~~p~aplltv~lalvg~ 374 (381)
T KOG2092|consen 308 -DGGGVAS---YLEAQAEMEIF--TVPASMLLRYSH------HQIFVFISDLLLMWELGGASSEPLAPLLTVFLALVGE 374 (381)
T ss_pred -ccccHHH---HHHHhhhHhhe--eccccccccccc------cceeehHHHHHHHHHhCCCCCcccchHHHHHHHHhCc
Confidence 3333311 11111222223 233334444 44 78999999 999999999999999999999999973
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-44 Score=368.56 Aligned_cols=318 Identities=19% Similarity=0.192 Sum_probs=213.7
Q ss_pred chhHHHHHHHhhhcCcchhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCccccccccccCccceEEEEEccCCCCcCcc
Q 006465 5 HTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGMDADGL 83 (644)
Q Consensus 5 ~~firv~~~~a~~~~~~vR~~iEyl~L~~Ai~~f~vL~~~H~~f~-~~pgC~~~~~~i~wpr~gilqVeI~~~g~~~dk~ 83 (644)
.++.|++..|+..+||..||++|...|++|.+++..|++||++|+ .|-+|++++++- |||-||+|||+.+--.
T Consensus 55 al~~~~a~~Ys~~~~~~frrl~egs~lf~a~lvl~~l~~ihi~F~rsp~scl~~~r~~-w~R~gi~rVev~~H~s----- 128 (381)
T KOG2092|consen 55 ALQNSAAQGYSYYQTREFRRLPEGSALFGAYLVLKCLVLIHILFVRSPMSCLFTLRET-WTRMGIFRVEVQHHAS----- 128 (381)
T ss_pred HHHHHHhhhhhhccCHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhh-hhhheeEEEEEEecch-----
Confidence 478999999999999999999999999999999999999999999 888999999995 9999999999985322
Q ss_pred hhhhhhhhhhhhhccccccchhhhhhccCCCcccccccCcCCCCCcCCCccccccccccccccccccChhhhhhhcceec
Q 006465 84 TFSAANLWLNWIHSNVRKGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHF 163 (644)
Q Consensus 84 ~~~~~k~~~~~lg~~~r~gkl~~~f~k~~~~~~e~~~~~~~~~~~~~~~~d~~~k~~~ee~~~~~~~s~kE~~ka~~~~~ 163 (644)
....|+++--+..+.+.. |.. -. |++-.- - ++ .++|+...++ .+-...+
T Consensus 129 -~r~p~Fl~f~~~~~~~~v-----F~~-~a--I~i~s~--------l--~~----~~~e~~e~~m--------~~~~~~~ 177 (381)
T KOG2092|consen 129 -HRLPTFLLFFVHVIESLV-----FVP-IA--IGILSF--------L--FE----FYDEQLEAFM--------VLVLVWL 177 (381)
T ss_pred -hcchHHHHHHhhhccccc-----ccc-hh--hhHHHh--------h--HH----HhcccHHHHH--------HHHHHHH
Confidence 112222222222211111 000 00 000000 0 00 0000000000 0000000
Q ss_pred cccccchhHHHHHHHHHHHHHHHhhhhhhccccccCccchhhccccccchhhhHHHhhhccccCCCcEEEeccceeeccC
Q 006465 164 GKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLP 243 (644)
Q Consensus 164 ~~k~~~~~S~~w~~~~qi~~~~~klw~i~g~~~~ld~pk~~~~l~~D~~~s~~V~~~e~~~k~~Ep~YeYSlEyGfLrLs 243 (644)
+.+..--+ . ..-+-++.|--..++ |-..-..-..+=+--+-++|..||+++||+|||+
T Consensus 178 ~~~f~ld~----------e--------~~~i~k~~~p~e~Ln----d~~e~~fh~~~f~~~~g~~Y~veyt~~yg~lrL~ 235 (381)
T KOG2092|consen 178 CELFTLDS----------E--------RTPISKKFFPREFLN----DLYELVFHIYFFSYAYGFSYLVEYTTAYGMLRLI 235 (381)
T ss_pred HHheeeec----------c--------cccccCCCCcHHHhc----chhhcccchhhhhhccCchHHHHHHHHHHHHhcc
Confidence 00000000 0 000000000000000 0000000001111222356777899999999999
Q ss_pred hhcccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEecccCeEEeeccccCCCCCC
Q 006465 244 EADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYNCQTKEFYNLSYAQEPPEGP 319 (644)
Q Consensus 244 ~~aR~r~nIpt~~VtLd~~~~CFGd~~~rlLL~~FlGYDdILmNSlk----~~~gkGYLrN~~TgE~Yrlv~~~~~~~~~ 319 (644)
+..|+|++||+++++||+++|||||+..|++|+.|+||||++|.+++ |..++||++|++|+|||+|+..+.
T Consensus 236 ~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~~~a~N~~~~G~lhn~q~~ehy~Fva~~~----- 310 (381)
T KOG2092|consen 236 LYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLNRTARNRTPSGPLHNTQNTEHYSFVADGG----- 310 (381)
T ss_pred HHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhccCCCCccccccccceEEEeeccc-----
Confidence 99999999999999999999999999999999999999999999987 568899999999999999997654
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhh----hccccchhHHHHHHHHHhhhhHhHhH
Q 006465 320 AKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHA----QHRLPTFQLIFVHVIESLVFVPIMIG 395 (644)
Q Consensus 320 ar~~sylv~k~~VlimsLFvfF~fT~sVSflLReSq~rif~FiV~L~~~~----r~~~P~a~Li~~hVi~sLVFVpvmIG 395 (644)
++ .+|+... .+| -+||+.+||+|||+|||||+||+||++|. ....|++||+ +|+++|| |
T Consensus 311 g~-asYl~a~---a~m-----~ifT~~~smllryshhqifvFi~dll~m~el~~a~~~p~apll--tv~lalv------g 373 (381)
T KOG2092|consen 311 GV-ASYLEAQ---AEM-----EIFTVPASMLLRYSHHQIFVFISDLLLMWELGGASSEPLAPLL--TVFLALV------G 373 (381)
T ss_pred cH-HHHHHHh---hhH-----hheeccccccccccccceeehHHHHHHHHHhCCCCCcccchHH--HHHHHHh------C
Confidence 33 6898632 223 35589999999999999999999999875 4456999985 7888887 9
Q ss_pred HHHHHHHhcc
Q 006465 396 ILFFLFEFYD 405 (644)
Q Consensus 396 M~afMsEFF~ 405 (644)
|+ |+|||+
T Consensus 374 ~~--~aefF~ 381 (381)
T KOG2092|consen 374 ED--EAEFFA 381 (381)
T ss_pred ch--hhhhcC
Confidence 99 999996
No 4
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=33.25 E-value=3e+02 Score=29.92 Aligned_cols=113 Identities=23% Similarity=0.372 Sum_probs=71.2
Q ss_pred cchhHHHHHHHHHhhh-hHhHhHHHH-HHHHhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHHHHHHHhhhe
Q 006465 374 PTFQLIFVHVIESLVF-VPIMIGILF-FLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIY 451 (644)
Q Consensus 374 P~a~Li~~hVi~sLVF-VpvmIGM~a-fMsEFF~D~~lAFyViliVWladqf~aI~~RT~iSkrywpRfFyLYf~~Fh~Y 451 (644)
|+..|-++..+++++| .|+ ||++ .+++=+-|+.+.+.-.+ -|++ --||.-...+|+++.|..
T Consensus 76 aT~ELC~~af~lal~~GiPl--G~iagv~~~kw~d~~is~~s~~------G~Si--------PvFWlAl~ll~ffslh~~ 139 (321)
T COG4168 76 ATMELCFLAFGLALIVGIPL--GMIAGVTRHKWLDKLISAISLL------GFSI--------PVFWLALLLLLFFSLHLG 139 (321)
T ss_pred cHHHHHHHHHHHHHHHcccH--HHHHHhhhhhHHHHHHHHHHHh------ccCc--------hHHHHHHHHHHHHHHhcc
Confidence 3355656667777665 454 8775 55666666665554221 1222 137888889999999999
Q ss_pred eeeccccch---------hHHHHHHHH------------HHHHHHHHHHhhccchH--HHHHHHHHHHHhhhCC
Q 006465 452 FFSYAYGFS---------YMALGTAAA------------FVQHLILYFWNHFEVPA--LQRFIQNRRTQLQQQP 502 (644)
Q Consensus 452 fysy~ygFS---------yLAL~ts~l------------Fi~HsMLyF~h~fElPa--l~r~~~~r~~~~~~~~ 502 (644)
-+.--+||. ++|++-.|+ .+||+.|=..--=-.|. +-|.+++|-+.+.+|-
T Consensus 140 ~~pv~GrydLLY~ikpiTGfalIDaw~s~spyRt~~~qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qN 213 (321)
T COG4168 140 WLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQN 213 (321)
T ss_pred ceecccceeeeeeeccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 999988884 788888886 35566543322222232 3478888877766554
No 5
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=32.88 E-value=65 Score=23.48 Aligned_cols=24 Identities=29% Similarity=0.557 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 006465 21 RVRAYLEYIYLFIAITLFCVLVVM 44 (644)
Q Consensus 21 ~vR~~iEyl~L~~Ai~~f~vL~~~ 44 (644)
|.+..+||+.|+.+++...+.+..
T Consensus 2 rGQ~SlE~~ili~~vlv~~~i~~~ 25 (28)
T PF04021_consen 2 RGQISLEFIILIAAVLVIAIIVIY 25 (28)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHh
Confidence 567789999999998887776644
No 6
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=28.56 E-value=1e+03 Score=27.90 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred hheeeeccccchhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhCCCccccccccccccee----eeecccC
Q 006465 449 HIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLH----ITRLNTR 524 (644)
Q Consensus 449 h~Yfysy~ygFSyLAL~ts~lFi~HsMLyF~h~fElPal~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 524 (644)
|+=|++=|+=--+-|..+-++=..-+.+.||+=| |--++|+.++..-+.-....+++--+..| ..+-+.+
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIy------ret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIY------RETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 6777775554445565555555555666777655 23445544444433333333444444444 2233333
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 006465 525 NPSLPNT-DATSGPGLRPGSNQAMPPTNRVDAPGP-ERSENNNPDRVGNTMEIPGQ 578 (644)
Q Consensus 525 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 578 (644)
.|+.++. +...+++.+.+..++.+.++..-.... +..+..-.+..++|+..|+.
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~s 313 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGS 313 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCcccccc
Confidence 3443332 222233334444455555332211111 22222223456677777754
No 7
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.84 E-value=92 Score=35.50 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.6
Q ss_pred hhHHHHHHHh-----hhcCcchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 006465 6 TFIRVQERFS-----RVLTPRVRAYLEYIYLFIAITLFCVLVVMHAN 47 (644)
Q Consensus 6 ~firv~~~~a-----~~~~~~vR~~iEyl~L~~Ai~~f~vL~~~H~~ 47 (644)
+..|+++.+. ..+-+.+|+.-||-+.++||.++|.|..+|++
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~ 431 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVE 431 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777774 23348899999999999999999999999965
No 8
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=25.02 E-value=62 Score=27.96 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=16.0
Q ss_pred CccchhHHHHHHHhhhcC
Q 006465 2 DPEHTFIRVQERFSRVLT 19 (644)
Q Consensus 2 ~~~~~firv~~~~a~~~~ 19 (644)
+|+|+|.|||...|..-+
T Consensus 27 tpq~~~~RVA~~la~~e~ 44 (83)
T PF00317_consen 27 TPQEMFMRVAMALASAEP 44 (83)
T ss_dssp SHHHHHHHHHHHHHTCCG
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 699999999999998665
No 9
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=23.45 E-value=7.3e+02 Score=24.53 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.1
Q ss_pred hHHHHHHHHhcccchhHHHHHHHHHHhh
Q 006465 394 IGILFFLFEFYDDQLLAFLVLILVWLCE 421 (644)
Q Consensus 394 IGM~afMsEFF~D~~lAFyViliVWlad 421 (644)
+++-.+++-+++++..|.-+.+.+|+.=
T Consensus 172 ~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 172 ISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 5666777888898888888777777544
No 10
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=19.58 E-value=2.4e+02 Score=29.28 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=14.4
Q ss_pred hheeeeccc-cchhHHHHHHHHHHHHH
Q 006465 449 HIYFFSYAY-GFSYMALGTAAAFVQHL 474 (644)
Q Consensus 449 h~Yfysy~y-gFSyLAL~ts~lFi~Hs 474 (644)
|||==-..+ .+..|+=+|-..+-..+
T Consensus 93 hIy~~d~~v~d~~~lv~~ck~Fl~~~s 119 (205)
T PF12238_consen 93 HIYKEDSEVKDYNGLVKFCKDFLDSES 119 (205)
T ss_pred hccCcccccccHHHHHHHHHHHhcccc
Confidence 665544454 55566666655555544
Done!