Query 006465
Match_columns 644
No_of_seqs 87 out of 89
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 01:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx7_A Nematocyst outer WALL a 13.0 48 0.0016 23.1 0.3 8 50-57 8-15 (28)
2 2kv5_A FST, putative uncharact 5.2 4E+02 0.014 19.6 2.4 18 387-404 7-24 (33)
3 2pbi_A Regulator of G-protein 5.0 2.6E+02 0.009 30.0 1.9 53 263-318 49-116 (424)
4 1d1r_A Hypothetical 11.4 KD pr 4.6 3.6E+02 0.012 24.4 2.2 34 45-78 7-42 (116)
5 4f78_A D,D-dipeptidase/D,D-car 4.4 3.7E+02 0.013 27.1 2.4 57 46-110 97-154 (255)
6 2v75_A Nuclear polyadenylated 3.9 5.7E+02 0.019 22.9 2.8 26 8-33 12-39 (104)
7 1e0n_A Hypothetical protein; Y 3.8 4.7E+02 0.016 17.7 1.8 16 291-306 7-22 (27)
8 2k21_A Potassium voltage-gated 3.8 6.3E+02 0.022 23.6 3.2 19 332-350 57-75 (138)
9 3ijm_A Uncharacterized restric 3.8 6.2E+02 0.021 23.9 3.1 18 295-312 112-129 (151)
10 1qys_A TOP7; alpha-beta, novel 3.6 90 0.0031 27.1 -2.5 64 221-284 11-79 (106)
No 1
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=12.98 E-value=48 Score=23.07 Aligned_cols=8 Identities=88% Similarity=1.477 Sum_probs=6.6
Q ss_pred CCCCcccc
Q 006465 50 QQPGCSSE 57 (644)
Q Consensus 50 ~~pgC~~~ 57 (644)
|||||++.
T Consensus 8 qqpgcssa 15 (28)
T 2nx7_A 8 QQPGCSSA 15 (28)
T ss_dssp HSTTCCGG
T ss_pred cCCCcccc
Confidence 89999874
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.25 E-value=4e+02 Score=19.56 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=13.0
Q ss_pred hhhhHhHhHHHHHHHHhc
Q 006465 387 LVFVPIMIGILFFLFEFY 404 (644)
Q Consensus 387 LVFVpvmIGM~afMsEFF 404 (644)
++.+|+.||++--|++-.
T Consensus 7 ~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344788999988776654
No 3
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=5.04 E-value=2.6e+02 Score=30.05 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCC-cchHHHHHHHhhcCchHHHHhhhhcc---CCceeEEeccc---------CeEEeecc--ccCCCCC
Q 006465 263 HPCF-GNRWQQLLINRFVGYDTILMNSLLHT---PGQGYLYNCQT---------KEFYNLSY--AQEPPEG 318 (644)
Q Consensus 263 ~~CF-Gd~~~rlLL~~FlGYDdILmNSlk~~---~gkGYLrN~~T---------gE~Yrlv~--~~~~~~~ 318 (644)
..|| |..+..+|++++ +.|+ --++.-. -..||++.+.. +-.|||.. .|.+..|
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~py~wps~~w 116 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQW 116 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECCGGGSCCSSC
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCCcccCcccCC
Confidence 4899 999999999988 5665 2333211 24688887754 45788873 4443333
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=4.65 E-value=3.6e+02 Score=24.36 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=12.7
Q ss_pred hhhccCCCC--ccccccccccCccceEEEEEccCCC
Q 006465 45 HANYVQQPG--CSSEFAGIRMTEAQLIQIKISSAGM 78 (644)
Q Consensus 45 H~~f~~~pg--C~~~~~~i~wpr~gilqVeI~~~g~ 78 (644)
+..|++.+| |.+.-...-=+++|.|+|.+.++|.
T Consensus 7 ~~vyst~~~~~~~~~~~~~~p~~~~~V~I~~er~gR 42 (116)
T 1d1r_A 7 RLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGR 42 (116)
T ss_dssp ---------------------CCCCEEEEEECCCSS
T ss_pred cEEEeCCCCccCccccccCCCCCCCeEEEEEEeCCC
Confidence 456776665 5443223324578999999998765
No 5
>4f78_A D,D-dipeptidase/D,D-carboxypeptidase; center for structural genomics of infectious diseases; HET: MSE; 1.95A {Enterococcus faecalis}
Probab=4.37 E-value=3.7e+02 Score=27.08 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=34.1
Q ss_pred hhccCCCCccccccccccCccceEEEEEccCCCCcCcc-hhhhhhhhhhhhhccccccchhhhhhc
Q 006465 46 ANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGMDADGL-TFSAANLWLNWIHSNVRKGKLALKFWR 110 (644)
Q Consensus 46 ~~f~~~pgC~~~~~~i~wpr~gilqVeI~~~g~~~dk~-~~~~~k~~~~~lg~~~r~gkl~~~f~k 110 (644)
..++++||||+|-.| +-|-|...+...+.. ...++..--.||...+.+.-...+|.+
T Consensus 97 ~~~~A~PG~SeH~tG--------lAvDi~~~~~~~~~~~~~f~~t~~~~WL~~na~~yGFilrYp~ 154 (255)
T 4f78_A 97 RKYVALPNHSEHQTG--------LAIDLGLNKKDIDFIRPDFPYDGICDEFRRAAPDYGFTQRYAR 154 (255)
T ss_dssp HHHSCCTTSCGGGGT--------CEEEEEESCSSCCSSSCCCCSSHHHHHHHHHGGGTTEEECCCG
T ss_pred hheecCCCCCCccce--------EEEEeccCCccccccccccCCCHHHHHHHhcCccCCEEEeCCC
Confidence 357899999999999 688887765422210 001112234577766666544445554
No 6
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=3.92 E-value=5.7e+02 Score=22.89 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=19.1
Q ss_pred HHHHHHHhhh--cCcchhhHHHHHHHHH
Q 006465 8 IRVQERFSRV--LTPRVRAYLEYIYLFI 33 (644)
Q Consensus 8 irv~~~~a~~--~~~~vR~~iEyl~L~~ 33 (644)
.=|+++++.+ |+..+.-+-|||+|++
T Consensus 12 ~ivaekL~~~~NF~EDv~YVAEyIvlLi 39 (104)
T 2v75_A 12 VIVAEKLAGIPNFNEDIKYVAEYIVLLI 39 (104)
T ss_dssp HHHHHHHTTSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccCccccHHHHHHHhheee
Confidence 3467777654 7788888888888875
No 7
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=3.83 E-value=4.7e+02 Score=17.70 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.9
Q ss_pred ccCCceeEEecccCeE
Q 006465 291 HTPGQGYLYNCQTKEF 306 (644)
Q Consensus 291 ~~~gkGYLrN~~TgE~ 306 (644)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3578889999999873
No 8
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.80 E-value=6.3e+02 Score=23.60 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 006465 332 VLMMSLFVFFTTTMSVSFT 350 (644)
Q Consensus 332 VlimsLFvfF~fT~sVSfl 350 (644)
.++|.+|-||+..+.+|++
T Consensus 57 L~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4668889998887777764
No 9
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=3.75 E-value=6.2e+02 Score=23.91 Aligned_cols=18 Identities=17% Similarity=0.648 Sum_probs=16.7
Q ss_pred ceeEEecccCeEEeeccc
Q 006465 295 QGYLYNCQTKEFYNLSYA 312 (644)
Q Consensus 295 kGYLrN~~TgE~Yrlv~~ 312 (644)
.||+||..|++-++++.+
T Consensus 112 EGFVynYkt~~W~rYr~g 129 (151)
T 3ijm_A 112 EGFVFNYKTQQWLRYRLG 129 (151)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred eeeeEeeccCceeEEEcC
Confidence 899999999999999864
No 10
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=3.55 E-value=90 Score=27.12 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=37.7
Q ss_pred hhccccCCCcEEEeccceeeccC-h--hcccccCceEEEEEeCCCCCCCcchHHHHHHHhh--cCchHH
Q 006465 221 ENRTKAFEPTYLYTMEKGYFLLP-E--ADKSRHNIRTFNISISAQHPCFGNRWQQLLINRF--VGYDTI 284 (644)
Q Consensus 221 e~~~k~~Ep~YeYSlEyGfLrLs-~--~aR~r~nIpt~~VtLd~~~~CFGd~~~rlLL~~F--lGYDdI 284 (644)
++..|.|+|+|--..|..+-..- + +.-...+-.-+.|++.++.+--.++|...+++-| +||.+|
T Consensus 11 ddngknfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyndi 79 (106)
T 1qys_A 11 DDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDI 79 (106)
T ss_dssp ECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcce
Confidence 34567788888766665332111 1 1112234444556666666656778888888766 788875
Done!