Query 006465
Match_columns 644
No_of_seqs 87 out of 89
Neff 3.7
Searched_HMMs 13730
Date Tue Mar 26 01:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006465.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006465hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o6wa1 b.72.1.1 (A:1-29) Spli 4.5 1.7E+02 0.013 19.0 1.7 16 291-306 9-24 (29)
2 d1ywia1 b.72.1.1 (A:15-42) Hun 4.2 1.7E+02 0.013 18.8 1.5 16 291-306 8-23 (28)
3 d1hr6a2 d.185.1.1 (A:234-470) 4.1 90 0.0065 27.5 -0.0 29 599-629 45-81 (237)
4 d1koza_ g.3.6.2 (A:) Grammotox 3.0 2.5E+02 0.018 18.7 1.5 19 49-67 10-29 (36)
5 d1krha2 c.25.1.2 (A:206-338) B 2.6 65 0.0047 25.7 -2.5 23 601-626 9-31 (133)
6 d2guka1 d.360.1.1 (A:4-114) Hy 2.5 2.5E+02 0.018 23.4 1.3 13 272-284 89-101 (111)
7 d1l1qa_ c.61.1.1 (A:) Adenine 2.5 3.3E+02 0.024 23.3 2.2 50 211-260 35-84 (181)
8 d2dk1a1 b.72.1.1 (A:7-44) WW d 2.3 3.2E+02 0.023 18.5 1.3 16 291-306 8-23 (38)
9 d1uzva_ b.115.1.1 (A:) Fucose- 2.3 3.1E+02 0.022 22.9 1.4 14 65-78 59-72 (114)
10 d1id0a_ d.122.1.3 (A:) Histidi 2.2 1E+03 0.075 18.7 5.0 53 250-310 24-78 (146)
No 1
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.47 E-value=1.7e+02 Score=19.00 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.5
Q ss_pred ccCCceeEEecccCeE
Q 006465 291 HTPGQGYLYNCQTKEF 306 (644)
Q Consensus 291 ~~~gkGYLrN~~TgE~ 306 (644)
..+|+=|-+|.+|+|-
T Consensus 9 ~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 9 DASGRIYYYNTLTKKS 24 (29)
T ss_dssp CTTCCEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 2
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.19 E-value=1.7e+02 Score=18.82 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.4
Q ss_pred ccCCceeEEecccCeE
Q 006465 291 HTPGQGYLYNCQTKEF 306 (644)
Q Consensus 291 ~~~gkGYLrN~~TgE~ 306 (644)
..+|+=|-+|.+|+|-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4578999999999983
No 3
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.10 E-value=90 Score=27.55 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHHHHhcCCCc-------cchhhhhhhhhhhhcc-cccc
Q 006465 599 LLLWILGGASS-------EGLNSFLSMFRDVREQ-GQVF 629 (644)
Q Consensus 599 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~ 629 (644)
+|==||||..+ +|..| ..|+.+|+. |.+|
T Consensus 45 vl~~iLGG~~~~~~~~~g~G~sS--rL~~~lre~~gLay 81 (237)
T d1hr6a2 45 TLQTLLGGGGSFSAGGPGKGMYS--RLYTHVLNQYYFVE 81 (237)
T ss_dssp HHHHHHCEEESSCCSSTTSCTTS--HHHHHTTTTCSSEE
T ss_pred HHHHHhCCCcccccCCCCCCccc--HHHHHHHHhcCchh
Confidence 45567887543 56776 478999984 5554
No 4
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=2.99 E-value=2.5e+02 Score=18.75 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=13.5
Q ss_pred cCCCCcccccc-ccccCccc
Q 006465 49 VQQPGCSSEFA-GIRMTEAQ 67 (644)
Q Consensus 49 ~~~pgC~~~~~-~i~wpr~g 67 (644)
+|...|..|+. ...|||+-
T Consensus 10 sqtsdccphlackskwprni 29 (36)
T d1koza_ 10 SQTSDCCPHLACKSKWPRNI 29 (36)
T ss_dssp CSSSSSCTTEESCCSSSSSB
T ss_pred ccccccCcchhhcccCCcee
Confidence 46668888874 34699973
No 5
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=2.55 E-value=65 Score=25.70 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=16.2
Q ss_pred HHHhcCCCccchhhhhhhhhhhhccc
Q 006465 601 LWILGGASSEGLNSFLSMFRDVREQG 626 (644)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (644)
+||-||. |+.-|.||.|+.-+++
T Consensus 9 v~IAgG~---GItP~~s~l~~~~~~~ 31 (133)
T d1krha2 9 LMLAGGT---GIAPFLSMLQVLEQKG 31 (133)
T ss_dssp EEEEEGG---GHHHHHHHHHHHHHHC
T ss_pred EEEEccH---hHHHHHHHHHHHHHcC
Confidence 4555665 8888888888775544
No 6
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.55 E-value=2.5e+02 Score=23.37 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.8
Q ss_pred HHHHHhhcCchHH
Q 006465 272 QLLINRFVGYDTI 284 (644)
Q Consensus 272 rlLL~~FlGYDdI 284 (644)
.|||..+||||.-
T Consensus 89 DFiLG~mLGYD~~ 101 (111)
T d2guka1 89 DFIIGAMLGYDIC 101 (111)
T ss_dssp HHHHHHHTTCCHH
T ss_pred HHHHHHHhcccHH
Confidence 3899999999963
No 7
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId: 5741]}
Probab=2.51 E-value=3.3e+02 Score=23.29 Aligned_cols=50 Identities=10% Similarity=-0.002 Sum_probs=39.4
Q ss_pred cchhhhHHHhhhccccCCCcEEEeccceeeccChhcccccCceEEEEEeC
Q 006465 211 RIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISIS 260 (644)
Q Consensus 211 ~~~s~~V~~~e~~~k~~Ep~YeYSlEyGfLrLs~~aR~r~nIpt~~VtLd 260 (644)
++-....+++-++.+..+..+.-++|.|=+.|......++|+|...+.-.
T Consensus 35 ~~~~~~~~~la~~~~~~~~d~Ivgie~~Gi~lA~~lA~~Lg~p~v~~rk~ 84 (181)
T d1l1qa_ 35 AALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKA 84 (181)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEESGGGHHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHHHHHHHHhccCCCEEEeeccchhhhHHHHHHHhCCCceeEeec
Confidence 34455556666677777888999999988889888889999998887764
No 8
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.29 E-value=3.2e+02 Score=18.49 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.2
Q ss_pred ccCCceeEEecccCeE
Q 006465 291 HTPGQGYLYNCQTKEF 306 (644)
Q Consensus 291 ~~~gkGYLrN~~TgE~ 306 (644)
..+|+=|-||.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (38)
T d2dk1a1 8 TSEGYHYYYDLISGAS 23 (38)
T ss_dssp CSTTCCCEEESSSCCE
T ss_pred CCCCCEEEEECCCCCE
Confidence 3578889999999983
No 9
>d1uzva_ b.115.1.1 (A:) Fucose-binding lectin II (PA-LII) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.25 E-value=3.1e+02 Score=22.90 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=12.7
Q ss_pred ccceEEEEEccCCC
Q 006465 65 EAQLIQIKISSAGM 78 (644)
Q Consensus 65 r~gilqVeI~~~g~ 78 (644)
..|.+||||+-||+
T Consensus 59 ~~GkVrieV~~nGk 72 (114)
T d1uzva_ 59 SSGKVQVQVSVNGR 72 (114)
T ss_dssp TTCEEEEEEEETTE
T ss_pred CCceEEEEEEeCCc
Confidence 37999999999999
No 10
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=2.23 E-value=1e+03 Score=18.66 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=32.7
Q ss_pred cCceEEEEEeCCCCCCCcch--HHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEEeec
Q 006465 250 HNIRTFNISISAQHPCFGNR--WQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLS 310 (644)
Q Consensus 250 ~nIpt~~VtLd~~~~CFGd~--~~rlLL~~FlGYDdILmNSlk~~~gkGYLrN~~TgE~Yrlv 310 (644)
.+|.+ .+.+++.-.+.+|+ +.+.+.+ ++-|++++.++.+-+.-..+++...+.
T Consensus 24 k~i~i-~~~~~~~~~~~~d~~~l~~vl~N-------Ll~NAik~~~~~i~i~~~~~~~~~~i~ 78 (146)
T d1id0a_ 24 KGVNI-SLDISPEISFVGEQNDFVEVMGN-------VLDNACKYCLEFVEISARQTDEHLYIV 78 (146)
T ss_dssp TTCEE-EEECCTTCEEESCHHHHHHHHHH-------HHHHHHHHCSSEEEEEEEECSSCEEEE
T ss_pred CCCEE-EEEcCCCcEEEECHHHHHHHHHH-------HHHHHHHhhcCCEEEEEEeeCCEEEEE
Confidence 35543 34455545677775 5554444 677999987666666666666666654
Done!