Query 006466
Match_columns 644
No_of_seqs 608 out of 4145
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 23:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415 Electron transfer flav 100.0 1E-136 3E-141 1027.0 41.3 540 100-644 69-621 (621)
2 COG0644 FixC Dehydrogenases (f 100.0 9.4E-43 2E-47 376.5 35.5 391 106-553 2-395 (396)
3 PRK10015 oxidoreductase; Provi 100.0 1.2E-40 2.6E-45 362.8 36.5 367 107-505 5-395 (429)
4 PRK10157 putative oxidoreducta 100.0 2.8E-38 6E-43 344.5 35.4 366 107-505 5-394 (428)
5 PF05187 ETF_QO: Electron tran 100.0 7.3E-39 1.6E-43 271.6 -0.1 109 488-596 1-109 (110)
6 PLN00093 geranylgeranyl diphos 100.0 1.2E-30 2.6E-35 284.7 34.9 337 104-486 36-385 (450)
7 TIGR02028 ChlP geranylgeranyl 100.0 1.3E-29 2.8E-34 274.0 34.4 334 108-486 1-346 (398)
8 TIGR02023 BchP-ChlP geranylger 100.0 1.5E-29 3.2E-34 273.3 34.3 325 108-485 1-335 (388)
9 TIGR02032 GG-red-SF geranylger 100.0 1.1E-28 2.3E-33 256.0 31.6 293 108-449 1-295 (295)
10 PRK07045 putative monooxygenas 100.0 6.3E-28 1.4E-32 260.8 34.6 341 106-486 4-359 (388)
11 COG0654 UbiH 2-polyprenyl-6-me 100.0 4E-28 8.7E-33 261.9 32.4 336 107-486 2-351 (387)
12 PF01494 FAD_binding_3: FAD bi 100.0 6E-29 1.3E-33 264.4 23.0 330 107-474 1-352 (356)
13 PRK07538 hypothetical protein; 100.0 1.1E-27 2.3E-32 261.1 32.4 332 108-480 1-361 (413)
14 PRK06617 2-octaprenyl-6-methox 100.0 9.9E-28 2.1E-32 257.8 30.8 329 108-486 2-339 (374)
15 PRK08013 oxidoreductase; Provi 100.0 9.8E-28 2.1E-32 260.2 30.9 336 107-486 3-358 (400)
16 PRK08244 hypothetical protein; 100.0 3.2E-27 6.9E-32 263.0 34.4 338 106-486 1-345 (493)
17 PRK08243 4-hydroxybenzoate 3-m 100.0 1.8E-27 3.9E-32 257.5 30.4 339 107-486 2-351 (392)
18 PRK06753 hypothetical protein; 100.0 3.8E-27 8.2E-32 253.4 32.2 331 109-487 2-340 (373)
19 PRK08163 salicylate hydroxylas 100.0 2.8E-27 6E-32 256.5 31.2 336 106-486 3-357 (396)
20 PRK07333 2-octaprenyl-6-methox 100.0 2.8E-27 6.2E-32 257.0 28.7 336 108-486 2-356 (403)
21 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.4E-27 1.2E-31 253.1 30.6 334 109-486 1-352 (385)
22 PRK05714 2-octaprenyl-3-methyl 100.0 3.6E-27 7.8E-32 256.4 28.5 336 106-487 1-362 (405)
23 PRK05868 hypothetical protein; 100.0 6.8E-27 1.5E-31 250.8 30.1 333 108-486 2-353 (372)
24 PRK07364 2-octaprenyl-6-methox 100.0 6E-27 1.3E-31 255.5 29.9 340 105-486 16-370 (415)
25 PRK06847 hypothetical protein; 100.0 1.3E-26 2.8E-31 249.4 32.1 333 107-485 4-351 (375)
26 PRK07588 hypothetical protein; 100.0 8.9E-27 1.9E-31 252.1 30.6 336 108-487 1-351 (391)
27 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.1E-26 2.3E-31 261.2 32.2 340 106-486 9-359 (538)
28 PRK06185 hypothetical protein; 100.0 1.6E-26 3.5E-31 251.4 32.3 340 105-485 4-357 (407)
29 PRK09126 hypothetical protein; 100.0 7.6E-27 1.6E-31 252.8 29.0 338 106-487 2-357 (392)
30 PRK08773 2-octaprenyl-3-methyl 100.0 8.7E-27 1.9E-31 252.3 29.3 336 106-485 5-357 (392)
31 PRK08132 FAD-dependent oxidore 100.0 1.5E-26 3.3E-31 260.7 31.9 339 105-485 21-371 (547)
32 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1.2E-26 2.5E-31 250.7 29.3 342 106-486 1-351 (390)
33 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.7E-26 3.8E-31 249.1 30.1 331 109-486 1-349 (382)
34 TIGR01989 COQ6 Ubiquinone bios 100.0 2.2E-26 4.8E-31 252.2 31.0 341 108-486 1-409 (437)
35 PRK06184 hypothetical protein; 100.0 5.1E-26 1.1E-30 253.8 32.7 337 107-484 3-351 (502)
36 PRK08294 phenol 2-monooxygenas 100.0 8.1E-26 1.8E-30 256.7 34.1 350 106-487 31-414 (634)
37 PRK08850 2-octaprenyl-6-methox 100.0 4.2E-26 9.1E-31 248.0 30.3 335 107-486 4-358 (405)
38 PRK06996 hypothetical protein; 100.0 1.1E-25 2.5E-30 243.9 32.7 334 105-487 9-362 (398)
39 PRK07494 2-octaprenyl-6-methox 100.0 4.7E-26 1E-30 246.2 29.2 334 105-485 5-352 (388)
40 PLN02985 squalene monooxygenas 100.0 3.1E-25 6.8E-30 246.0 36.3 358 104-502 40-421 (514)
41 PRK06834 hypothetical protein; 99.9 9.9E-26 2.1E-30 249.3 31.2 327 107-486 3-338 (488)
42 PRK06475 salicylate hydroxylas 99.9 1.5E-25 3.2E-30 243.2 31.8 331 108-480 3-355 (400)
43 PRK08849 2-octaprenyl-3-methyl 99.9 1.8E-25 3.8E-30 241.3 32.0 336 107-487 3-351 (384)
44 PRK07608 ubiquinone biosynthes 99.9 8.4E-26 1.8E-30 244.2 29.0 336 106-486 4-355 (388)
45 PRK07190 hypothetical protein; 99.9 2.2E-25 4.7E-30 246.3 31.1 328 107-485 5-347 (487)
46 PRK07236 hypothetical protein; 99.9 2.5E-25 5.5E-30 240.3 30.7 330 106-485 5-375 (386)
47 PTZ00367 squalene epoxidase; P 99.9 5.1E-25 1.1E-29 245.4 33.0 366 106-505 32-437 (567)
48 PRK08020 ubiF 2-octaprenyl-3-m 99.9 2.6E-25 5.7E-30 240.6 30.0 336 106-486 4-357 (391)
49 TIGR03219 salicylate_mono sali 99.9 3.1E-25 6.7E-30 241.9 29.6 336 109-486 2-374 (414)
50 PRK05732 2-octaprenyl-6-methox 99.9 5.6E-25 1.2E-29 238.4 30.9 339 106-487 2-359 (395)
51 PRK06126 hypothetical protein; 99.9 1E-24 2.3E-29 245.9 33.4 336 105-485 5-375 (545)
52 PRK11445 putative oxidoreducta 99.9 4.2E-23 9.1E-28 219.9 32.5 305 108-468 2-315 (351)
53 PLN02927 antheraxanthin epoxid 99.9 5.2E-23 1.1E-27 230.4 32.2 339 104-485 78-446 (668)
54 TIGR01790 carotene-cycl lycope 99.9 4.4E-22 9.5E-27 215.2 34.6 305 109-469 1-318 (388)
55 COG2440 FixX Ferredoxin-like p 99.9 1.6E-25 3.4E-30 181.6 4.1 81 551-642 16-97 (99)
56 PLN02697 lycopene epsilon cycl 99.9 2.8E-21 6.1E-26 213.2 35.1 319 106-482 107-451 (529)
57 KOG2614 Kynurenine 3-monooxyge 99.9 2.1E-23 4.5E-28 214.2 16.1 300 107-455 2-328 (420)
58 PLN02463 lycopene beta cyclase 99.9 1.7E-21 3.7E-26 211.9 29.2 292 106-455 27-334 (447)
59 PRK08255 salicylyl-CoA 5-hydro 99.9 1.2E-21 2.6E-26 227.6 21.8 321 109-486 2-340 (765)
60 PF04820 Trp_halogenase: Trypt 99.9 3.7E-20 8E-25 202.6 24.9 223 205-469 147-370 (454)
61 KOG1298 Squalene monooxygenase 99.8 5.6E-18 1.2E-22 171.0 20.5 303 105-451 43-362 (509)
62 PRK15449 ferredoxin-like prote 99.8 1.8E-20 3.9E-25 155.4 2.2 80 550-642 13-93 (95)
63 PF05834 Lycopene_cycl: Lycope 99.8 6E-17 1.3E-21 173.9 28.7 279 109-451 1-290 (374)
64 TIGR01789 lycopene_cycl lycope 99.8 1.9E-16 4.2E-21 169.3 30.6 295 109-465 1-302 (370)
65 PRK04176 ribulose-1,5-biphosph 99.7 1.1E-15 2.4E-20 154.8 17.6 156 105-295 23-183 (257)
66 TIGR00292 thiazole biosynthesi 99.7 1.7E-15 3.7E-20 153.0 17.5 158 106-298 20-183 (254)
67 KOG3855 Monooxygenase involved 99.6 1.2E-14 2.7E-19 148.7 19.7 331 106-468 35-429 (481)
68 PF01946 Thi4: Thi4 family; PD 99.6 4.1E-15 8.9E-20 141.6 13.4 157 105-296 15-176 (230)
69 COG1635 THI4 Ribulose 1,5-bisp 99.6 2.8E-14 6E-19 134.8 15.3 153 106-293 29-186 (262)
70 COG2081 Predicted flavoprotein 99.5 1.8E-13 4E-18 141.1 15.7 163 106-299 2-188 (408)
71 PRK12771 putative glutamate sy 99.5 1.3E-12 2.8E-17 147.9 23.2 60 566-631 502-561 (564)
72 PF01266 DAO: FAD dependent ox 99.5 3.9E-12 8.4E-17 135.2 21.0 162 109-298 1-213 (358)
73 PRK00711 D-amino acid dehydrog 99.4 2.7E-11 5.9E-16 132.3 26.7 71 208-298 197-267 (416)
74 PRK09853 putative selenate red 99.4 3E-11 6.5E-16 140.7 27.5 42 106-153 538-579 (1019)
75 TIGR03315 Se_ygfK putative sel 99.4 3.8E-11 8.2E-16 140.5 26.6 41 107-153 537-577 (1012)
76 TIGR01373 soxB sarcosine oxida 99.4 5.3E-11 1.1E-15 129.7 26.1 72 208-298 179-250 (407)
77 PLN02661 Putative thiazole syn 99.4 1.5E-11 3.3E-16 127.7 19.4 152 105-290 90-249 (357)
78 PF03486 HI0933_like: HI0933-l 99.4 3.4E-12 7.3E-17 137.4 14.3 158 108-299 1-187 (409)
79 PRK08274 tricarballylate dehyd 99.4 3.2E-12 6.9E-17 141.7 14.4 197 106-321 3-231 (466)
80 PRK11259 solA N-methyltryptoph 99.3 2E-10 4.3E-15 123.7 25.0 60 208-285 145-204 (376)
81 PF12831 FAD_oxidored: FAD dep 99.3 8E-13 1.7E-17 144.5 5.7 141 109-283 1-148 (428)
82 PRK12409 D-amino acid dehydrog 99.3 4.4E-10 9.5E-15 122.6 27.0 75 209-298 194-268 (410)
83 PRK01747 mnmC bifunctional tRN 99.3 9.8E-11 2.1E-15 135.2 22.9 156 107-286 260-464 (662)
84 TIGR01176 fum_red_Fp fumarate 99.3 1.1E-10 2.4E-15 132.0 21.7 189 107-321 3-221 (580)
85 TIGR01813 flavo_cyto_c flavocy 99.3 1.3E-11 2.9E-16 135.7 13.9 193 109-320 1-229 (439)
86 COG0579 Predicted dehydrogenas 99.3 3.2E-11 6.9E-16 128.7 16.1 171 106-299 2-222 (429)
87 TIGR01377 soxA_mon sarcosine o 99.3 4.1E-10 8.9E-15 121.4 25.0 72 206-298 139-210 (380)
88 PRK11101 glpA sn-glycerol-3-ph 99.3 5E-10 1.1E-14 126.1 26.5 172 106-298 5-221 (546)
89 PRK06069 sdhA succinate dehydr 99.3 1.5E-10 3.2E-15 131.4 22.2 166 104-287 2-202 (577)
90 PRK09231 fumarate reductase fl 99.3 3.2E-11 7E-16 136.5 16.6 167 105-287 2-198 (582)
91 TIGR03329 Phn_aa_oxid putative 99.3 1.2E-10 2.5E-15 128.9 20.3 62 206-286 177-238 (460)
92 PF00890 FAD_binding_2: FAD bi 99.3 3.9E-11 8.4E-16 131.1 15.4 190 109-319 1-237 (417)
93 PLN00128 Succinate dehydrogena 99.3 3.7E-11 7.9E-16 136.8 15.7 192 104-322 47-277 (635)
94 COG0665 DadA Glycine/D-amino a 99.3 3.2E-10 6.9E-15 122.5 22.1 203 206-452 150-367 (387)
95 PRK05192 tRNA uridine 5-carbox 99.3 2.8E-11 6.1E-16 134.2 13.7 149 106-285 3-157 (618)
96 TIGR00551 nadB L-aspartate oxi 99.3 5.7E-11 1.2E-15 132.2 15.8 161 107-288 2-192 (488)
97 PRK07121 hypothetical protein; 99.3 2.7E-11 5.9E-16 135.1 13.1 97 211-320 176-276 (492)
98 PRK06452 sdhA succinate dehydr 99.3 1.1E-11 2.5E-16 139.8 9.7 188 106-321 4-224 (566)
99 PRK06481 fumarate reductase fl 99.3 1E-10 2.3E-15 130.5 17.1 197 104-320 58-288 (506)
100 PTZ00139 Succinate dehydrogena 99.3 1.4E-10 3.1E-15 131.9 18.5 166 105-287 27-231 (617)
101 PRK08626 fumarate reductase fl 99.3 2.3E-10 4.9E-15 131.0 20.1 87 212-319 158-244 (657)
102 PRK08958 sdhA succinate dehydr 99.2 1.6E-10 3.5E-15 131.0 17.4 189 106-321 6-232 (588)
103 PRK12266 glpD glycerol-3-phosp 99.2 3.6E-09 7.7E-14 118.3 27.9 65 209-285 152-216 (508)
104 PRK08071 L-aspartate oxidase; 99.2 2.3E-10 5E-15 127.7 18.2 159 107-286 3-191 (510)
105 PLN02464 glycerol-3-phosphate 99.2 3.8E-09 8.2E-14 120.5 28.3 69 208-286 228-297 (627)
106 PRK08275 putative oxidoreducta 99.2 1.1E-10 2.4E-15 131.8 15.7 170 103-287 5-202 (554)
107 PRK09078 sdhA succinate dehydr 99.2 2.3E-10 5E-15 130.0 18.3 89 212-320 149-237 (598)
108 PRK07395 L-aspartate oxidase; 99.2 3.8E-10 8.2E-15 126.9 19.7 162 105-286 7-198 (553)
109 PRK11728 hydroxyglutarate oxid 99.2 1E-09 2.2E-14 119.0 22.4 167 107-298 2-214 (393)
110 PRK07057 sdhA succinate dehydr 99.2 2.6E-10 5.7E-15 129.4 18.5 66 212-287 148-213 (591)
111 PRK07804 L-aspartate oxidase; 99.2 2.5E-10 5.4E-15 128.4 17.7 169 104-287 13-212 (541)
112 PRK12845 3-ketosteroid-delta-1 99.2 1E-10 2.3E-15 131.6 14.5 96 212-321 217-317 (564)
113 PF13738 Pyr_redox_3: Pyridine 99.2 2.4E-11 5.3E-16 118.9 7.9 137 111-286 1-139 (203)
114 PF01134 GIDA: Glucose inhibit 99.2 1.5E-10 3.2E-15 122.2 13.5 143 109-283 1-150 (392)
115 PRK12835 3-ketosteroid-delta-1 99.2 3.1E-10 6.7E-15 128.6 16.7 96 213-321 214-314 (584)
116 PRK13369 glycerol-3-phosphate 99.2 1.8E-08 3.9E-13 112.7 30.4 65 208-285 151-215 (502)
117 PRK07573 sdhA succinate dehydr 99.2 3.2E-10 6.9E-15 129.6 16.2 62 215-287 173-234 (640)
118 PRK12837 3-ketosteroid-delta-1 99.2 1E-10 2.3E-15 130.8 11.7 95 213-321 174-273 (513)
119 PRK06263 sdhA succinate dehydr 99.2 1.1E-10 2.4E-15 131.6 11.9 165 104-286 4-198 (543)
120 PRK12834 putative FAD-binding 99.2 1.8E-10 3.9E-15 130.0 13.7 208 106-321 3-270 (549)
121 PRK12839 hypothetical protein; 99.2 3.2E-10 7E-15 128.0 15.4 100 209-320 211-316 (572)
122 PRK08641 sdhA succinate dehydr 99.2 3.9E-10 8.5E-15 128.0 15.6 188 107-321 3-226 (589)
123 COG1249 Lpd Pyruvate/2-oxoglut 99.2 1.2E-10 2.6E-15 126.4 10.9 144 105-286 2-148 (454)
124 PLN02815 L-aspartate oxidase 99.2 2.6E-10 5.7E-15 128.8 13.6 191 104-322 26-249 (594)
125 KOG1335 Dihydrolipoamide dehyd 99.2 7.1E-10 1.5E-14 112.9 15.1 52 106-163 38-89 (506)
126 PRK06175 L-aspartate oxidase; 99.1 1.5E-10 3.2E-15 126.7 11.2 161 106-287 3-191 (433)
127 PRK08205 sdhA succinate dehydr 99.1 9.2E-10 2E-14 125.0 17.6 67 211-287 139-208 (583)
128 PRK12814 putative NADPH-depend 99.1 1.3E-09 2.8E-14 125.2 19.0 42 107-154 193-234 (652)
129 PTZ00306 NADH-dependent fumara 99.1 2.2E-10 4.7E-15 139.2 12.8 203 104-321 406-661 (1167)
130 PRK06467 dihydrolipoamide dehy 99.1 4.2E-10 9.1E-15 124.7 14.1 55 106-166 3-57 (471)
131 TIGR01812 sdhA_frdA_Gneg succi 99.1 4.7E-10 1E-14 127.3 14.5 88 212-320 129-216 (566)
132 COG0578 GlpA Glycerol-3-phosph 99.1 2E-08 4.3E-13 109.6 26.2 172 106-298 11-235 (532)
133 TIGR01424 gluta_reduc_2 glutat 99.1 1.2E-10 2.6E-15 128.3 9.2 142 107-286 2-143 (446)
134 PLN02546 glutathione reductase 99.1 3.1E-10 6.7E-15 127.3 12.4 140 106-286 78-229 (558)
135 PTZ00383 malate:quinone oxidor 99.1 1.4E-09 3E-14 120.2 17.0 72 207-298 206-283 (497)
136 PLN02172 flavin-containing mon 99.1 7.1E-10 1.5E-14 121.9 14.2 154 106-285 9-173 (461)
137 PRK05945 sdhA succinate dehydr 99.1 3E-10 6.4E-15 128.8 11.3 166 106-287 2-199 (575)
138 PRK05976 dihydrolipoamide dehy 99.1 7.2E-10 1.6E-14 123.0 13.8 53 106-165 3-55 (472)
139 COG2072 TrkA Predicted flavopr 99.1 1.3E-09 2.8E-14 119.3 15.5 163 105-338 6-171 (443)
140 PRK12842 putative succinate de 99.1 1.1E-09 2.4E-14 124.2 15.6 96 212-320 214-315 (574)
141 TIGR00136 gidA glucose-inhibit 99.1 6.3E-10 1.4E-14 123.4 12.9 148 108-285 1-154 (617)
142 PRK06134 putative FAD-binding 99.1 9.7E-10 2.1E-14 124.7 14.8 97 210-319 215-317 (581)
143 PRK08401 L-aspartate oxidase; 99.1 4.7E-10 1E-14 124.1 12.0 156 108-288 2-178 (466)
144 TIGR01421 gluta_reduc_1 glutat 99.1 5.2E-10 1.1E-14 123.2 12.3 140 107-286 2-142 (450)
145 PRK07803 sdhA succinate dehydr 99.1 2.3E-09 5E-14 122.4 17.5 165 105-287 6-215 (626)
146 TIGR02730 carot_isom carotene 99.1 5.2E-08 1.1E-12 108.9 27.7 63 211-289 228-290 (493)
147 PRK12843 putative FAD-binding 99.1 9.3E-10 2E-14 124.8 13.7 95 212-320 221-319 (578)
148 PRK06854 adenylylsulfate reduc 99.1 1.1E-09 2.4E-14 124.7 14.3 167 104-286 8-196 (608)
149 PTZ00058 glutathione reductase 99.1 2.1E-10 4.5E-15 128.6 8.2 53 106-165 47-99 (561)
150 TIGR01320 mal_quin_oxido malat 99.1 2.6E-09 5.6E-14 118.2 16.7 79 206-298 172-250 (483)
151 PRK12844 3-ketosteroid-delta-1 99.1 7.7E-10 1.7E-14 124.8 12.7 96 212-321 208-308 (557)
152 TIGR01811 sdhA_Bsu succinate d 99.1 1.3E-09 2.8E-14 123.9 14.3 89 212-320 129-221 (603)
153 PRK09077 L-aspartate oxidase; 99.1 1.4E-09 3.1E-14 122.2 14.6 188 105-320 6-232 (536)
154 TIGR01292 TRX_reduct thioredox 99.1 1.3E-09 2.9E-14 113.2 13.2 113 108-286 1-113 (300)
155 PF08491 SE: Squalene epoxidas 99.1 1E-08 2.2E-13 102.6 18.7 172 274-468 2-189 (276)
156 PRK05249 soluble pyridine nucl 99.1 4.8E-10 1E-14 124.2 10.3 146 106-286 4-150 (461)
157 PRK06370 mercuric reductase; V 99.1 1.2E-09 2.7E-14 120.9 13.5 55 105-166 3-57 (463)
158 COG0492 TrxB Thioredoxin reduc 99.1 1.4E-09 3E-14 112.5 12.9 114 106-286 2-116 (305)
159 PRK06115 dihydrolipoamide dehy 99.1 1.5E-09 3.2E-14 120.2 13.9 54 107-166 3-56 (466)
160 PRK07843 3-ketosteroid-delta-1 99.1 5.1E-09 1.1E-13 118.3 18.4 95 213-321 209-308 (557)
161 PRK06416 dihydrolipoamide dehy 99.1 1.6E-09 3.4E-14 120.1 14.0 52 107-165 4-55 (462)
162 PRK06116 glutathione reductase 99.0 2.8E-10 6.2E-15 125.6 7.8 52 107-165 4-55 (450)
163 PRK05257 malate:quinone oxidor 99.0 6.8E-09 1.5E-13 115.1 18.5 79 206-298 177-256 (494)
164 KOG2404 Fumarate reductase, fl 99.0 6.5E-10 1.4E-14 110.6 9.0 198 109-333 11-258 (477)
165 TIGR02734 crtI_fam phytoene de 99.0 7.1E-08 1.5E-12 108.1 26.5 60 212-287 219-278 (502)
166 PRK06327 dihydrolipoamide dehy 99.0 2E-09 4.3E-14 119.5 13.4 147 106-286 3-158 (475)
167 TIGR02061 aprA adenosine phosp 99.0 2E-09 4.4E-14 121.7 12.9 161 109-286 1-192 (614)
168 PRK07251 pyridine nucleotide-d 99.0 3.7E-09 7.9E-14 116.3 14.3 51 107-163 3-54 (438)
169 TIGR03364 HpnW_proposed FAD de 99.0 3.7E-09 8.1E-14 113.4 13.7 150 108-285 1-197 (365)
170 PRK15317 alkyl hydroperoxide r 99.0 2.7E-09 5.9E-14 119.7 13.0 114 105-285 209-322 (517)
171 PRK14727 putative mercuric red 99.0 5.1E-09 1.1E-13 116.3 14.8 59 101-165 10-68 (479)
172 KOG2820 FAD-dependent oxidored 99.0 1.1E-08 2.4E-13 103.0 14.6 161 104-285 4-212 (399)
173 TIGR02485 CobZ_N-term precorri 99.0 5.2E-09 1.1E-13 114.9 13.5 188 112-320 1-221 (432)
174 PRK13339 malate:quinone oxidor 99.0 2.5E-08 5.5E-13 109.9 18.7 79 206-298 178-257 (497)
175 PRK14694 putative mercuric red 99.0 8.4E-09 1.8E-13 114.4 15.0 53 106-165 5-57 (468)
176 PRK07233 hypothetical protein; 99.0 3.1E-07 6.7E-12 100.8 27.1 38 109-152 1-38 (434)
177 PRK08010 pyridine nucleotide-d 98.9 8E-09 1.7E-13 113.7 14.1 51 107-163 3-54 (441)
178 TIGR01350 lipoamide_DH dihydro 98.9 2E-08 4.3E-13 111.3 17.2 49 108-163 2-50 (461)
179 PLN02507 glutathione reductase 98.9 4.2E-09 9.1E-14 117.4 11.7 54 106-165 24-86 (499)
180 TIGR03143 AhpF_homolog putativ 98.9 7.7E-09 1.7E-13 116.9 13.6 112 107-286 4-115 (555)
181 TIGR03140 AhpF alkyl hydropero 98.9 8.9E-09 1.9E-13 115.4 13.9 114 105-285 210-323 (515)
182 TIGR01423 trypano_reduc trypan 98.9 3.8E-09 8.3E-14 117.0 10.7 56 106-166 2-65 (486)
183 PRK13748 putative mercuric red 98.9 1.3E-08 2.8E-13 115.7 15.1 54 106-166 97-150 (561)
184 KOG1399 Flavin-containing mono 98.9 7.7E-09 1.7E-13 111.9 12.0 145 105-284 4-152 (448)
185 PF00743 FMO-like: Flavin-bind 98.9 1.3E-08 2.9E-13 113.4 14.3 145 108-286 2-151 (531)
186 TIGR01438 TGR thioredoxin and 98.9 3.8E-09 8.3E-14 117.2 9.6 146 107-286 2-156 (484)
187 TIGR00275 flavoprotein, HI0933 98.9 2.9E-09 6.2E-14 115.5 8.1 147 111-285 1-160 (400)
188 PLN02612 phytoene desaturase 98.9 4.1E-07 8.8E-12 103.0 25.4 56 213-283 309-364 (567)
189 TIGR02053 MerA mercuric reduct 98.9 1.1E-08 2.3E-13 113.5 11.9 52 108-166 1-52 (463)
190 PRK07818 dihydrolipoamide dehy 98.9 1.5E-08 3.2E-13 112.4 12.8 51 107-164 4-54 (466)
191 PTZ00052 thioredoxin reductase 98.9 6.3E-09 1.4E-13 116.1 9.5 52 107-164 5-64 (499)
192 PRK07512 L-aspartate oxidase; 98.8 3.1E-08 6.8E-13 110.8 14.7 64 211-287 135-199 (513)
193 TIGR03452 mycothione_red mycot 98.8 6.7E-09 1.5E-13 114.5 9.0 51 107-166 2-52 (452)
194 PTZ00153 lipoamide dehydrogena 98.8 3.9E-08 8.5E-13 112.0 15.1 57 105-167 114-171 (659)
195 TIGR00562 proto_IX_ox protopor 98.8 1.5E-06 3.3E-11 96.3 27.1 42 108-153 3-46 (462)
196 KOG2853 Possible oxidoreductas 98.8 3.5E-07 7.5E-12 92.1 19.1 41 106-148 85-125 (509)
197 TIGR02731 phytoene_desat phyto 98.8 1.7E-06 3.8E-11 95.6 26.2 63 212-284 213-275 (453)
198 PRK13800 putative oxidoreducta 98.8 5.2E-08 1.1E-12 116.0 14.9 166 104-287 10-207 (897)
199 PRK06292 dihydrolipoamide dehy 98.8 4E-08 8.7E-13 108.8 12.9 53 106-165 2-54 (460)
200 PRK07846 mycothione reductase; 98.8 2.2E-08 4.7E-13 110.4 10.5 51 107-166 1-51 (451)
201 KOG2852 Possible oxidoreductas 98.8 1.5E-07 3.3E-12 92.8 15.0 167 107-286 10-209 (380)
202 PRK06912 acoL dihydrolipoamide 98.8 1.8E-08 3.8E-13 111.5 9.5 52 109-167 2-53 (458)
203 PRK07845 flavoprotein disulfid 98.8 6.6E-08 1.4E-12 107.1 14.0 145 109-286 3-152 (466)
204 PF00070 Pyr_redox: Pyridine n 98.8 7.2E-08 1.6E-12 79.4 10.7 79 109-253 1-79 (80)
205 PRK11883 protoporphyrinogen ox 98.8 6.7E-06 1.4E-10 90.8 29.7 40 109-154 2-43 (451)
206 COG1233 Phytoene dehydrogenase 98.8 1.5E-07 3.2E-12 104.7 15.9 57 211-283 223-279 (487)
207 PRK12416 protoporphyrinogen ox 98.7 1.5E-06 3.3E-11 96.4 23.9 45 109-153 3-47 (463)
208 TIGR02732 zeta_caro_desat caro 98.7 2E-06 4.3E-11 95.5 24.6 60 214-285 221-284 (474)
209 PRK14989 nitrite reductase sub 98.7 1.1E-07 2.4E-12 111.6 14.6 111 108-298 146-256 (847)
210 PRK13977 myosin-cross-reactive 98.7 2.7E-07 5.9E-12 101.9 16.6 65 212-286 226-294 (576)
211 PLN02576 protoporphyrinogen ox 98.7 6.3E-06 1.4E-10 92.3 27.8 42 107-153 12-53 (496)
212 PF07992 Pyr_redox_2: Pyridine 98.7 2.6E-08 5.6E-13 97.1 7.3 115 109-286 1-123 (201)
213 PRK10262 thioredoxin reductase 98.7 1.7E-07 3.6E-12 98.8 13.6 114 106-286 5-118 (321)
214 COG3380 Predicted NAD/FAD-depe 98.7 1.2E-07 2.6E-12 93.0 11.3 142 108-283 2-158 (331)
215 COG1053 SdhA Succinate dehydro 98.7 1E-07 2.2E-12 106.6 12.3 166 105-286 4-203 (562)
216 COG0445 GidA Flavin-dependent 98.7 2E-08 4.2E-13 107.5 5.8 144 107-284 4-157 (621)
217 PRK05329 anaerobic glycerol-3- 98.7 2.8E-06 6.1E-11 92.1 22.3 60 212-285 259-318 (422)
218 PRK09754 phenylpropionate diox 98.7 2.6E-07 5.7E-12 100.2 14.5 108 108-298 145-252 (396)
219 COG1231 Monoamine oxidase [Ami 98.7 4.4E-06 9.5E-11 88.5 22.9 42 106-153 6-47 (450)
220 PF13434 K_oxygenase: L-lysine 98.7 1.9E-08 4E-13 106.3 5.1 153 107-286 2-160 (341)
221 PF06039 Mqo: Malate:quinone o 98.7 6.1E-07 1.3E-11 95.2 16.2 79 207-299 176-255 (488)
222 TIGR02374 nitri_red_nirB nitri 98.6 2.3E-07 5E-12 108.9 13.9 109 108-298 141-249 (785)
223 COG1251 NirB NAD(P)H-nitrite r 98.6 4.7E-08 1E-12 107.9 7.6 175 24-300 81-256 (793)
224 PRK07208 hypothetical protein; 98.6 3.7E-07 8.1E-12 101.7 15.0 43 105-153 2-44 (479)
225 PRK04965 NADH:flavorubredoxin 98.6 3E-07 6.5E-12 99.1 13.6 109 108-298 142-250 (377)
226 PLN02487 zeta-carotene desatur 98.6 1.8E-05 3.8E-10 89.1 27.3 61 213-285 296-360 (569)
227 PTZ00363 rab-GDP dissociation 98.6 9E-07 1.9E-11 96.6 16.6 60 211-285 231-290 (443)
228 TIGR02352 thiamin_ThiO glycine 98.6 3.1E-06 6.8E-11 89.4 20.3 195 206-451 131-335 (337)
229 COG0029 NadB Aspartate oxidase 98.6 1.4E-07 3.1E-12 100.2 9.8 89 211-320 132-221 (518)
230 KOG0405 Pyridine nucleotide-di 98.6 5.2E-08 1.1E-12 98.3 6.1 145 105-288 18-168 (478)
231 COG2509 Uncharacterized FAD-de 98.6 7.6E-07 1.7E-11 93.7 14.7 83 211-313 172-255 (486)
232 PLN02676 polyamine oxidase 98.6 3.7E-06 7.9E-11 93.5 21.2 40 107-152 26-66 (487)
233 PRK12779 putative bifunctional 98.6 1.2E-07 2.6E-12 112.4 9.2 99 106-284 305-403 (944)
234 PF13454 NAD_binding_9: FAD-NA 98.6 5.5E-07 1.2E-11 84.4 11.6 144 111-283 1-155 (156)
235 PRK09897 hypothetical protein; 98.5 3.6E-07 7.9E-12 101.7 10.8 39 108-150 2-40 (534)
236 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.1E-06 2.3E-11 95.8 14.1 113 107-298 173-285 (454)
237 TIGR01372 soxA sarcosine oxida 98.5 7E-07 1.5E-11 107.4 13.5 122 106-285 162-286 (985)
238 PRK12810 gltD glutamate syntha 98.5 5.8E-06 1.3E-10 91.8 19.4 42 106-153 142-183 (471)
239 PRK12769 putative oxidoreducta 98.5 1.6E-06 3.5E-11 100.1 15.2 68 218-285 512-584 (654)
240 PRK09564 coenzyme A disulfide 98.5 7.7E-07 1.7E-11 98.1 11.9 113 109-286 2-116 (444)
241 PRK12831 putative oxidoreducta 98.5 2.3E-07 5E-12 102.5 7.7 40 106-151 139-178 (464)
242 PLN03000 amine oxidase 98.5 3.2E-05 7E-10 89.6 25.2 41 107-153 184-224 (881)
243 TIGR01316 gltA glutamate synth 98.5 7.3E-06 1.6E-10 90.4 19.4 42 106-153 132-173 (449)
244 PTZ00318 NADH dehydrogenase-li 98.5 5.5E-06 1.2E-10 90.7 17.7 98 109-285 175-280 (424)
245 COG1232 HemY Protoporphyrinoge 98.5 2.6E-05 5.7E-10 84.4 22.3 41 109-153 2-42 (444)
246 KOG1336 Monodehydroascorbate/f 98.4 1E-06 2.3E-11 93.3 10.8 162 27-286 152-314 (478)
247 COG3634 AhpF Alkyl hydroperoxi 98.4 4.5E-07 9.7E-12 91.6 6.9 114 106-284 210-324 (520)
248 PF13450 NAD_binding_8: NAD(P) 98.4 3.7E-07 8.1E-12 72.5 5.0 35 112-152 1-35 (68)
249 PF00732 GMC_oxred_N: GMC oxid 98.4 1.2E-06 2.6E-11 91.1 9.6 75 212-297 193-268 (296)
250 PRK05335 tRNA (uracil-5-)-meth 98.4 1.7E-06 3.6E-11 92.6 10.8 36 108-149 3-38 (436)
251 KOG2844 Dimethylglycine dehydr 98.4 1.2E-06 2.5E-11 95.6 9.4 77 202-298 177-253 (856)
252 KOG0042 Glycerol-3-phosphate d 98.4 3E-07 6.5E-12 97.9 4.7 66 211-286 223-288 (680)
253 PRK09754 phenylpropionate diox 98.4 2E-06 4.4E-11 93.3 11.2 110 108-286 4-113 (396)
254 TIGR03378 glycerol3P_GlpB glyc 98.4 7E-06 1.5E-10 88.1 14.9 62 210-285 261-323 (419)
255 PRK06370 mercuric reductase; V 98.4 5.6E-06 1.2E-10 91.8 14.8 102 108-287 172-273 (463)
256 COG1252 Ndh NADH dehydrogenase 98.4 1.3E-06 2.7E-11 93.1 9.1 100 108-286 156-263 (405)
257 PLN02852 ferredoxin-NADP+ redu 98.4 1.4E-06 3E-11 96.0 9.5 41 107-151 26-66 (491)
258 PRK04965 NADH:flavorubredoxin 98.3 2.6E-06 5.7E-11 91.8 11.5 109 108-286 3-112 (377)
259 TIGR02462 pyranose_ox pyranose 98.3 7.4E-06 1.6E-10 91.2 15.0 37 108-150 1-37 (544)
260 PRK05976 dihydrolipoamide dehy 98.3 5.7E-06 1.2E-10 92.0 13.8 103 108-287 181-283 (472)
261 PRK12778 putative bifunctional 98.3 1.1E-06 2.4E-11 103.0 8.3 39 106-150 430-468 (752)
262 PRK11749 dihydropyrimidine deh 98.3 1.5E-06 3.3E-11 96.1 8.7 39 106-150 139-177 (457)
263 KOG2665 Predicted FAD-dependen 98.3 4.4E-06 9.5E-11 83.6 10.7 163 106-286 47-258 (453)
264 KOG2960 Protein involved in th 98.3 2.5E-06 5.4E-11 80.6 8.5 153 107-287 76-236 (328)
265 PRK12775 putative trifunctiona 98.3 1E-06 2.2E-11 105.5 7.4 38 107-150 430-467 (1006)
266 PRK06116 glutathione reductase 98.3 7.7E-06 1.7E-10 90.4 13.7 99 108-286 168-266 (450)
267 TIGR03169 Nterm_to_SelD pyridi 98.3 2.9E-06 6.3E-11 91.0 10.0 108 109-286 1-108 (364)
268 TIGR03197 MnmC_Cterm tRNA U-34 98.3 1.4E-05 2.9E-10 86.4 15.0 62 207-286 130-191 (381)
269 KOG0404 Thioredoxin reductase 98.3 2.2E-06 4.8E-11 81.7 7.6 117 107-285 8-124 (322)
270 PRK13512 coenzyme A disulfide 98.3 4.2E-06 9.1E-11 92.1 11.1 37 109-149 3-39 (438)
271 KOG2311 NAD/FAD-utilizing prot 98.3 2.8E-06 6E-11 89.3 8.9 144 106-284 27-185 (679)
272 PRK05249 soluble pyridine nucl 98.2 8.7E-06 1.9E-10 90.3 13.1 99 107-286 175-273 (461)
273 KOG4254 Phytoene desaturase [C 98.2 2.5E-06 5.5E-11 89.2 7.9 61 211-287 263-323 (561)
274 TIGR01421 gluta_reduc_1 glutat 98.2 1.4E-05 3E-10 88.2 14.2 99 108-286 167-266 (450)
275 TIGR01318 gltD_gamma_fam gluta 98.2 2.7E-06 5.9E-11 94.2 8.3 39 106-150 140-178 (467)
276 TIGR03377 glycerol3P_GlpA glyc 98.2 0.00013 2.9E-09 82.0 22.0 78 207-298 123-200 (516)
277 PRK06416 dihydrolipoamide dehy 98.2 1E-05 2.3E-10 89.7 12.9 101 108-286 173-273 (462)
278 PRK07251 pyridine nucleotide-d 98.2 1.3E-05 2.8E-10 88.3 13.2 97 108-286 158-254 (438)
279 TIGR02053 MerA mercuric reduct 98.2 1.4E-05 3.1E-10 88.5 13.6 101 108-286 167-267 (463)
280 PRK12770 putative glutamate sy 98.2 4.1E-06 8.8E-11 89.5 8.7 38 107-150 18-55 (352)
281 PRK09564 coenzyme A disulfide 98.2 1.9E-05 4.2E-10 87.0 14.2 108 108-298 150-257 (444)
282 COG1143 NuoI Formate hydrogenl 98.2 6.1E-07 1.3E-11 84.0 1.9 55 566-629 53-113 (172)
283 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 9.5E-06 2.1E-10 87.4 11.1 36 109-150 2-37 (433)
284 TIGR03385 CoA_CoA_reduc CoA-di 98.2 2.2E-05 4.7E-10 86.2 13.7 107 108-298 138-244 (427)
285 PRK07818 dihydrolipoamide dehy 98.2 2.1E-05 4.6E-10 87.3 13.7 103 108-287 173-275 (466)
286 PRK06115 dihydrolipoamide dehy 98.2 2.4E-05 5.3E-10 86.7 14.2 104 107-286 174-277 (466)
287 TIGR02374 nitri_red_nirB nitri 98.2 5.9E-06 1.3E-10 97.1 9.7 109 110-286 1-109 (785)
288 COG1142 HycB Fe-S-cluster-cont 98.1 9.4E-07 2E-11 81.6 2.1 54 567-632 50-103 (165)
289 TIGR01424 gluta_reduc_2 glutat 98.1 2.2E-05 4.7E-10 86.7 13.1 98 108-286 167-264 (446)
290 PF13247 Fer4_11: 4Fe-4S diclu 98.1 5.1E-07 1.1E-11 76.8 0.1 59 567-635 6-64 (98)
291 PRK06912 acoL dihydrolipoamide 98.1 2.8E-05 6.2E-10 86.0 13.9 100 108-287 171-270 (458)
292 PRK05675 sdhA succinate dehydr 98.1 3.9E-06 8.4E-11 95.1 7.1 90 211-320 125-214 (570)
293 COG0446 HcaD Uncharacterized N 98.1 2E-05 4.4E-10 85.5 12.5 102 107-286 136-238 (415)
294 PLN02507 glutathione reductase 98.1 2.4E-05 5.2E-10 87.4 13.2 99 108-287 204-302 (499)
295 COG3075 GlpB Anaerobic glycero 98.1 1.9E-05 4.1E-10 79.7 10.9 59 212-284 258-316 (421)
296 PRK14989 nitrite reductase sub 98.1 1.4E-05 3.1E-10 94.1 11.9 111 108-286 4-114 (847)
297 PTZ00318 NADH dehydrogenase-li 98.1 1.1E-05 2.4E-10 88.3 10.3 117 107-286 10-126 (424)
298 PRK13512 coenzyme A disulfide 98.1 2.4E-05 5.3E-10 86.1 12.6 94 108-286 149-242 (438)
299 PRK07845 flavoprotein disulfid 98.1 3.3E-05 7.2E-10 85.7 13.6 99 108-287 178-276 (466)
300 PTZ00058 glutathione reductase 98.1 3.3E-05 7.1E-10 87.0 13.6 101 107-286 237-337 (561)
301 PF01593 Amino_oxidase: Flavin 98.1 8.3E-05 1.8E-09 80.8 16.2 62 206-284 203-264 (450)
302 COG3573 Predicted oxidoreducta 98.1 6.1E-05 1.3E-09 76.1 13.4 175 106-287 4-230 (552)
303 TIGR01423 trypano_reduc trypan 98.1 3.5E-05 7.5E-10 85.7 13.1 103 108-287 188-290 (486)
304 COG4529 Uncharacterized protei 98.1 3E-05 6.5E-10 83.0 11.9 158 108-289 2-168 (474)
305 KOG0029 Amine oxidase [Seconda 98.1 3.7E-06 8E-11 92.9 5.2 43 105-153 13-55 (501)
306 PTZ00188 adrenodoxin reductase 98.1 1.1E-05 2.3E-10 87.8 8.6 40 107-152 39-79 (506)
307 TIGR01317 GOGAT_sm_gam glutama 98.1 8E-06 1.7E-10 90.9 7.8 38 107-150 143-180 (485)
308 KOG0685 Flavin-containing amin 98.1 0.00046 9.9E-09 73.5 20.2 42 107-153 21-62 (498)
309 PLN02546 glutathione reductase 98.0 5.2E-05 1.1E-09 85.5 14.1 100 108-287 253-352 (558)
310 PF14697 Fer4_21: 4Fe-4S diclu 98.0 1.9E-06 4.1E-11 66.1 1.6 54 566-629 4-58 (59)
311 PRK12809 putative oxidoreducta 98.0 9.7E-06 2.1E-10 93.3 8.1 39 106-150 309-347 (639)
312 PRK06327 dihydrolipoamide dehy 98.0 4.5E-05 9.7E-10 84.9 12.9 102 108-286 184-285 (475)
313 TIGR03140 AhpF alkyl hydropero 98.0 4.2E-05 9E-10 85.9 12.6 99 107-286 352-451 (515)
314 COG3486 IucD Lysine/ornithine 98.0 2.7E-05 5.9E-10 81.2 10.0 153 105-291 3-163 (436)
315 PRK06467 dihydrolipoamide dehy 98.0 6.7E-05 1.4E-09 83.4 13.8 103 108-288 175-277 (471)
316 PRK08010 pyridine nucleotide-d 98.0 6.3E-05 1.4E-09 82.9 13.4 98 108-287 159-256 (441)
317 PRK07846 mycothione reductase; 98.0 5.7E-05 1.2E-09 83.4 12.8 97 108-286 167-263 (451)
318 PRK12831 putative oxidoreducta 98.0 5.6E-05 1.2E-09 83.7 12.5 112 107-286 281-397 (464)
319 PTZ00153 lipoamide dehydrogena 98.0 9.9E-05 2.1E-09 84.5 14.5 115 108-286 313-428 (659)
320 PRK13748 putative mercuric red 98.0 7.1E-05 1.5E-09 85.2 13.1 97 108-287 271-367 (561)
321 PRK14694 putative mercuric red 97.9 7.9E-05 1.7E-09 82.8 13.1 97 108-287 179-275 (468)
322 COG0493 GltD NADPH-dependent g 97.9 1.3E-05 2.8E-10 87.5 6.6 39 108-152 124-162 (457)
323 PRK14727 putative mercuric red 97.9 9E-05 2E-09 82.5 13.3 97 108-287 189-285 (479)
324 PRK13984 putative oxidoreducta 97.9 1.8E-05 3.8E-10 90.8 7.8 39 106-150 282-320 (604)
325 COG1252 Ndh NADH dehydrogenase 97.9 3.5E-05 7.5E-10 82.2 9.1 109 107-286 3-112 (405)
326 TIGR01292 TRX_reduct thioredox 97.9 0.0001 2.2E-09 76.5 12.4 98 107-286 141-239 (300)
327 PLN02268 probable polyamine ox 97.9 1.1E-05 2.3E-10 88.8 5.2 40 108-153 1-40 (435)
328 TIGR03452 mycothione_red mycot 97.9 0.00011 2.4E-09 81.2 13.0 97 108-286 170-266 (452)
329 PRK10262 thioredoxin reductase 97.9 9.8E-05 2.1E-09 77.7 12.0 104 107-286 146-249 (321)
330 PTZ00052 thioredoxin reductase 97.9 0.00012 2.6E-09 81.8 13.1 97 108-286 183-279 (499)
331 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.4E-05 2.9E-10 85.4 5.3 40 108-153 2-41 (377)
332 PRK15317 alkyl hydroperoxide r 97.9 9.8E-05 2.1E-09 83.0 12.5 99 107-286 351-450 (517)
333 COG1146 Ferredoxin [Energy pro 97.9 1.2E-05 2.5E-10 63.9 3.2 59 566-634 6-64 (68)
334 KOG4716 Thioredoxin reductase 97.9 0.00016 3.5E-09 73.2 11.9 52 106-163 18-77 (503)
335 TIGR02733 desat_CrtD C-3',4' d 97.8 1.5E-05 3.3E-10 89.1 5.3 63 211-284 231-293 (492)
336 PRK06567 putative bifunctional 97.8 3.2E-05 7E-10 90.0 7.9 38 106-149 382-419 (1028)
337 TIGR01810 betA choline dehydro 97.8 0.00013 2.8E-09 82.4 12.7 71 214-298 196-266 (532)
338 PRK06292 dihydrolipoamide dehy 97.8 0.0002 4.3E-09 79.4 13.9 103 107-288 169-271 (460)
339 PLN02785 Protein HOTHEAD 97.8 0.00021 4.6E-09 81.1 14.0 35 106-147 54-88 (587)
340 TIGR01438 TGR thioredoxin and 97.8 0.00018 3.8E-09 80.2 13.2 100 108-286 181-280 (484)
341 COG2907 Predicted NAD/FAD-bind 97.8 0.00011 2.5E-09 74.8 10.1 39 107-152 8-46 (447)
342 PLN02568 polyamine oxidase 97.7 3.1E-05 6.8E-10 86.9 5.4 47 105-152 3-49 (539)
343 COG0562 Glf UDP-galactopyranos 97.7 3.6E-05 7.8E-10 77.7 5.1 40 108-153 2-41 (374)
344 PRK08348 NADH-plastoquinone ox 97.7 2.9E-05 6.3E-10 69.2 3.7 59 561-632 36-94 (120)
345 COG3349 Uncharacterized conser 97.7 3.4E-05 7.5E-10 83.3 4.7 40 109-154 2-41 (485)
346 COG1148 HdrA Heterodisulfide r 97.7 4.5E-05 9.9E-10 80.7 4.8 51 564-631 557-607 (622)
347 TIGR03169 Nterm_to_SelD pyridi 97.7 0.0004 8.6E-09 74.5 12.2 98 108-285 146-243 (364)
348 PRK12778 putative bifunctional 97.6 0.00035 7.5E-09 82.2 12.6 111 107-285 570-686 (752)
349 TIGR01582 FDH-beta formate deh 97.6 4.4E-05 9.6E-10 77.9 4.1 57 566-633 89-146 (283)
350 PF13237 Fer4_10: 4Fe-4S diclu 97.6 2.3E-05 5E-10 58.6 1.5 47 566-624 5-52 (52)
351 PRK11749 dihydropyrimidine deh 97.6 0.00044 9.5E-09 76.6 12.1 111 107-286 273-388 (457)
352 CHL00065 psaC photosystem I su 97.6 1.6E-05 3.4E-10 65.6 0.3 62 565-635 6-70 (81)
353 KOG3923 D-aspartate oxidase [A 97.6 0.003 6.5E-08 63.4 16.0 41 107-147 3-44 (342)
354 TIGR01318 gltD_gamma_fam gluta 97.6 0.00056 1.2E-08 75.9 12.4 111 107-285 282-398 (467)
355 PRK12770 putative glutamate sy 97.6 0.00049 1.1E-08 73.5 11.2 109 108-286 173-287 (352)
356 COG0437 HybA Fe-S-cluster-cont 97.6 5.7E-05 1.2E-09 72.4 3.5 57 567-633 66-122 (203)
357 KOG1276 Protoporphyrinogen oxi 97.5 0.00013 2.9E-09 76.3 5.1 45 106-154 10-54 (491)
358 KOG0399 Glutamate synthase [Am 97.4 0.00026 5.7E-09 81.2 7.2 39 106-150 1784-1822(2142)
359 PLN02529 lysine-specific histo 97.4 0.00015 3.3E-09 83.5 5.5 41 106-152 159-199 (738)
360 TIGR02179 PorD_KorD 2-oxoacid: 97.4 0.00012 2.6E-09 59.8 3.2 54 565-631 22-75 (78)
361 PRK09623 vorD 2-ketoisovalerat 97.4 0.00013 2.8E-09 63.3 3.3 54 565-631 48-101 (105)
362 PLN02328 lysine-specific histo 97.4 0.0002 4.3E-09 83.1 5.4 41 106-152 237-277 (808)
363 PRK02106 choline dehydrogenase 97.3 0.00019 4.2E-09 81.5 5.0 69 216-298 205-273 (560)
364 TIGR03478 DMSO_red_II_bet DMSO 97.3 0.0002 4.3E-09 73.1 4.3 58 566-633 127-184 (321)
365 COG1144 Pyruvate:ferredoxin ox 97.3 0.00012 2.7E-09 59.6 2.2 55 564-631 31-86 (91)
366 PRK09626 oorD 2-oxoglutarate-a 97.3 0.00014 3E-09 62.9 2.7 61 562-632 11-74 (103)
367 PRK12779 putative bifunctional 97.3 0.0018 3.9E-08 77.4 12.9 112 107-286 447-563 (944)
368 PRK12809 putative oxidoreducta 97.3 0.002 4.2E-08 74.4 12.5 111 107-285 451-567 (639)
369 PRK12387 formate hydrogenlyase 97.3 0.00017 3.6E-09 69.2 3.1 60 562-631 33-93 (180)
370 PRK09624 porD pyuvate ferredox 97.3 9.6E-05 2.1E-09 64.0 1.3 53 566-631 49-101 (105)
371 TIGR01660 narH nitrate reducta 97.3 0.00021 4.5E-09 75.8 4.0 59 564-632 177-235 (492)
372 TIGR03048 PS_I_psaC photosyste 97.3 0.0001 2.3E-09 60.5 1.3 66 561-636 2-70 (80)
373 TIGR03143 AhpF_homolog putativ 97.3 0.0021 4.6E-08 72.9 12.2 35 107-147 143-177 (555)
374 KOG3256 NADH:ubiquinone oxidor 97.2 6.8E-05 1.5E-09 67.5 -0.0 55 566-629 109-168 (212)
375 PRK08222 hydrogenase 4 subunit 97.2 0.00022 4.8E-09 68.2 3.5 57 566-631 36-93 (181)
376 PRK12775 putative trifunctiona 97.2 0.0023 4.9E-08 77.2 12.8 112 107-286 571-687 (1006)
377 PF12838 Fer4_7: 4Fe-4S diclus 97.2 3.7E-05 8E-10 57.5 -1.5 44 581-627 7-52 (52)
378 PRK14993 tetrathionate reducta 97.2 0.00013 2.7E-09 73.3 1.7 57 566-633 96-152 (244)
379 TIGR03149 cyt_nit_nrfC cytochr 97.2 0.0002 4.3E-09 71.1 3.0 56 566-631 90-145 (225)
380 KOG1800 Ferredoxin/adrenodoxin 97.2 0.00097 2.1E-08 69.0 7.9 41 107-151 20-60 (468)
381 PF13187 Fer4_9: 4Fe-4S diclus 97.2 6.6E-05 1.4E-09 56.8 -0.3 45 581-628 7-55 (55)
382 PRK05888 NADH dehydrogenase su 97.2 0.00037 7.9E-09 65.8 4.3 57 566-631 56-117 (164)
383 TIGR02936 fdxN_nitrog ferredox 97.2 0.00012 2.5E-09 61.9 0.7 59 564-631 17-90 (91)
384 TIGR03862 flavo_PP4765 unchara 97.1 0.01 2.2E-07 63.5 15.0 82 210-310 84-172 (376)
385 TIGR01372 soxA sarcosine oxida 97.1 0.0045 9.8E-08 74.9 13.8 105 107-298 317-422 (985)
386 PF00996 GDI: GDP dissociation 97.1 0.018 3.8E-07 62.7 16.8 54 212-281 232-285 (438)
387 TIGR01944 rnfB electron transp 97.1 0.00028 6E-09 66.6 2.5 57 562-631 107-163 (165)
388 PRK09625 porD pyruvate flavodo 97.1 0.00015 3.3E-09 65.7 0.7 54 566-632 57-110 (133)
389 PLN00071 photosystem I subunit 97.1 0.00019 4.1E-09 59.1 1.0 62 566-636 7-71 (81)
390 PRK10330 formate dehydrogenase 97.1 0.00025 5.4E-09 68.1 2.0 53 567-631 55-107 (181)
391 TIGR02060 aprB adenosine phosp 97.1 0.00023 5E-09 64.1 1.6 60 566-631 6-65 (132)
392 TIGR01816 sdhA_forward succina 97.1 0.0054 1.2E-07 69.7 13.0 90 211-321 118-207 (565)
393 TIGR00403 ndhI NADH-plastoquin 97.0 0.00049 1.1E-08 66.0 3.5 57 566-631 60-122 (183)
394 PRK06273 ferredoxin; Provision 97.0 0.00019 4.2E-09 67.2 0.8 56 566-630 47-110 (165)
395 PRK02651 photosystem I subunit 97.0 0.00026 5.7E-09 58.3 1.2 60 565-633 6-68 (81)
396 PF13434 K_oxygenase: L-lysine 96.9 0.0095 2.1E-07 63.2 12.7 143 106-283 189-339 (341)
397 COG2303 BetA Choline dehydroge 96.9 0.00068 1.5E-08 76.4 4.2 37 104-146 4-40 (542)
398 KOG2495 NADH-dehydrogenase (ub 96.9 0.0051 1.1E-07 64.8 9.8 130 108-319 219-357 (491)
399 PRK09898 hypothetical protein; 96.9 0.00082 1.8E-08 66.0 3.9 56 566-631 119-174 (208)
400 TIGR02951 DMSO_dmsB DMSO reduc 96.9 0.00059 1.3E-08 64.2 2.7 59 566-634 60-118 (161)
401 PLN02976 amine oxidase 96.9 0.001 2.2E-08 80.1 5.1 41 106-152 692-732 (1713)
402 COG1245 Predicted ATPase, RNas 96.9 0.00063 1.4E-08 71.9 2.9 66 560-634 3-74 (591)
403 TIGR01971 NuoI NADH-quinone ox 96.9 0.00054 1.2E-08 61.2 2.1 56 567-631 42-102 (122)
404 PRK07118 ferredoxin; Validated 96.8 0.0006 1.3E-08 69.8 2.5 55 567-635 212-266 (280)
405 PF00037 Fer4: 4Fe-4S binding 96.8 0.00044 9.6E-09 42.6 1.0 24 603-629 1-24 (24)
406 PRK13984 putative oxidoreducta 96.8 0.0089 1.9E-07 68.7 12.4 64 222-286 472-539 (604)
407 COG0492 TrxB Thioredoxin reduc 96.8 0.0087 1.9E-07 62.2 11.0 96 107-286 143-239 (305)
408 TIGR01317 GOGAT_sm_gam glutama 96.8 0.007 1.5E-07 67.5 10.8 125 107-284 283-413 (485)
409 TIGR02163 napH_ ferredoxin-typ 96.8 0.00069 1.5E-08 68.7 2.6 61 560-631 193-254 (255)
410 PF06100 Strep_67kDa_ant: Stre 96.8 0.041 8.9E-07 59.8 15.9 42 108-151 3-44 (500)
411 PRK10882 hydrogenase 2 protein 96.7 0.00047 1E-08 71.9 0.8 57 566-632 108-164 (328)
412 PRK12769 putative oxidoreducta 96.7 0.001 2.2E-08 77.0 3.4 56 566-633 52-107 (654)
413 TIGR03224 benzo_boxA benzoyl-C 96.7 0.00074 1.6E-08 73.4 2.0 51 566-630 8-58 (411)
414 TIGR00402 napF ferredoxin-type 96.6 0.00089 1.9E-08 57.6 1.6 53 566-629 32-84 (101)
415 PRK05113 electron transport co 96.6 0.00078 1.7E-08 65.0 1.2 57 562-631 108-164 (191)
416 KOG1346 Programmed cell death 96.6 0.0064 1.4E-07 63.6 7.8 114 107-299 347-461 (659)
417 TIGR02494 PFLE_PFLC glycyl-rad 96.6 0.00057 1.2E-08 71.1 0.2 59 564-631 44-102 (295)
418 PRK13409 putative ATPase RIL; 96.6 0.0012 2.7E-08 75.0 2.8 64 562-634 4-73 (590)
419 TIGR02066 dsrB sulfite reducta 96.6 0.001 2.3E-08 70.0 1.9 47 579-629 186-232 (341)
420 PRK06991 ferredoxin; Provision 96.5 0.0014 3E-08 66.5 2.4 54 565-631 82-135 (270)
421 PRK08764 ferredoxin; Provision 96.5 0.0015 3.2E-08 59.4 2.3 57 562-631 79-135 (135)
422 KOG3851 Sulfide:quinone oxidor 96.5 0.0012 2.5E-08 66.8 1.7 38 105-146 37-74 (446)
423 COG1145 NapF Ferredoxin [Energ 96.5 0.0012 2.6E-08 56.3 1.3 61 565-634 26-86 (99)
424 PF12837 Fer4_6: 4Fe-4S bindin 96.4 0.00049 1.1E-08 42.3 -0.9 23 603-628 2-24 (24)
425 TIGR02700 flavo_MJ0208 archaeo 96.4 0.001 2.2E-08 66.5 0.9 50 566-629 146-195 (234)
426 COG1206 Gid NAD(FAD)-utilizing 96.4 0.013 2.9E-07 59.6 8.3 37 107-149 3-39 (439)
427 COG1149 MinD superfamily P-loo 96.3 0.002 4.4E-08 64.1 2.3 54 566-632 67-120 (284)
428 PRK14028 pyruvate ferredoxin o 96.3 0.0014 3.1E-08 68.6 0.9 57 566-631 245-309 (312)
429 TIGR02912 sulfite_red_C sulfit 96.2 0.0014 3.1E-08 68.6 0.6 50 566-629 167-219 (314)
430 PRK09477 napH quinol dehydroge 96.2 0.0026 5.6E-08 65.2 2.4 61 560-631 200-262 (271)
431 PRK10194 ferredoxin-type prote 96.2 0.003 6.6E-08 59.5 2.7 51 580-633 110-160 (163)
432 KOG1336 Monodehydroascorbate/f 96.2 0.021 4.5E-07 61.3 9.1 43 223-284 138-180 (478)
433 COG3634 AhpF Alkyl hydroperoxi 96.2 0.014 3.1E-07 59.8 7.4 76 107-253 354-430 (520)
434 TIGR03287 methan_mark_16 putat 96.1 0.0028 6E-08 67.0 2.0 53 565-634 299-353 (391)
435 PRK01438 murD UDP-N-acetylmura 96.1 0.016 3.5E-07 64.6 8.3 33 108-146 17-49 (480)
436 KOG1238 Glucose dehydrogenase/ 96.1 0.0048 1.1E-07 68.5 4.0 38 106-148 56-93 (623)
437 PRK06567 putative bifunctional 96.0 0.033 7.2E-07 65.6 10.5 67 219-285 647-728 (1028)
438 CHL00014 ndhI NADH dehydrogena 96.0 0.0022 4.7E-08 60.6 0.7 57 566-631 57-119 (167)
439 TIGR00397 mauM_napG MauM/NapG 96.0 0.0064 1.4E-07 59.8 3.7 62 566-634 89-161 (213)
440 TIGR02512 Fe_only_hydrog hydro 95.8 0.0023 5E-08 68.7 0.0 57 566-631 5-70 (374)
441 PF12797 Fer4_2: 4Fe-4S bindin 95.8 0.0026 5.6E-08 37.8 0.2 20 602-624 2-21 (22)
442 TIGR03294 FrhG coenzyme F420 h 95.7 0.0024 5.2E-08 63.4 -0.3 50 565-628 171-220 (228)
443 PRK08318 dihydropyrimidine deh 95.7 0.0074 1.6E-07 66.0 3.4 59 566-635 340-402 (420)
444 PRK00783 DNA-directed RNA poly 95.7 0.0038 8.2E-08 63.7 0.9 57 562-633 165-221 (263)
445 KOG2755 Oxidoreductase [Genera 95.6 0.01 2.3E-07 58.5 3.4 35 110-148 2-36 (334)
446 TIGR03467 HpnE squalene-associ 95.6 1.4 3.1E-05 47.6 20.7 54 215-284 200-253 (419)
447 COG0446 HcaD Uncharacterized N 95.5 0.057 1.2E-06 58.4 9.6 108 110-287 1-108 (415)
448 TIGR02176 pyruv_ox_red pyruvat 95.5 0.0066 1.4E-07 74.0 2.2 59 564-631 679-761 (1165)
449 PLN02172 flavin-containing mon 95.5 0.024 5.2E-07 62.7 6.3 34 107-146 204-237 (461)
450 PRK13795 hypothetical protein; 95.5 0.0054 1.2E-07 70.3 1.2 54 564-629 577-630 (636)
451 cd07030 RNAP_D D subunit of Ar 95.4 0.0057 1.2E-07 62.2 1.1 55 568-635 169-223 (259)
452 COG2221 DsrA Dissimilatory sul 95.4 0.0043 9.4E-08 63.0 0.1 45 566-624 170-214 (317)
453 COG2768 Uncharacterized Fe-S c 95.4 0.0055 1.2E-07 61.4 0.7 51 566-631 191-243 (354)
454 PRK09476 napG quinol dehydroge 95.3 0.011 2.3E-07 59.8 2.7 58 568-632 97-165 (254)
455 PLN02852 ferredoxin-NADP+ redu 95.3 0.25 5.4E-06 54.9 13.3 74 212-285 266-354 (491)
456 KOG1346 Programmed cell death 95.2 0.06 1.3E-06 56.6 7.5 128 106-288 177-314 (659)
457 PRK09476 napG quinol dehydroge 94.9 0.011 2.4E-07 59.7 1.5 57 565-630 134-205 (254)
458 PRK09326 F420H2 dehydrogenase 94.9 0.0081 1.8E-07 63.7 0.3 56 564-628 8-70 (341)
459 TIGR02064 dsrA sulfite reducta 94.8 0.012 2.7E-07 63.2 1.5 40 579-625 247-286 (402)
460 KOG0405 Pyridine nucleotide-di 94.8 0.098 2.1E-06 53.9 7.7 104 104-287 186-289 (478)
461 TIGR00397 mauM_napG MauM/NapG 94.7 0.025 5.5E-07 55.6 3.3 58 566-632 129-198 (213)
462 PRK09898 hypothetical protein; 94.5 0.017 3.8E-07 56.6 1.6 53 565-633 151-203 (208)
463 PRK07569 bidirectional hydroge 94.4 0.018 3.8E-07 57.7 1.4 60 562-631 141-210 (234)
464 PF00743 FMO-like: Flavin-bind 94.2 0.12 2.6E-06 58.2 7.7 34 107-146 183-216 (531)
465 PRK10194 ferredoxin-type prote 94.1 0.03 6.4E-07 52.8 2.2 57 566-632 64-125 (163)
466 PRK07118 ferredoxin; Validated 93.9 0.018 3.8E-07 59.1 0.2 43 581-631 146-188 (280)
467 TIGR03385 CoA_CoA_reduc CoA-di 93.8 0.22 4.8E-06 54.5 8.7 40 412-451 259-303 (427)
468 TIGR02163 napH_ ferredoxin-typ 93.7 0.043 9.3E-07 55.7 2.6 50 580-632 172-222 (255)
469 COG1251 NirB NAD(P)H-nitrite r 93.6 0.41 8.9E-06 54.3 10.2 114 107-288 3-116 (793)
470 KOG4716 Thioredoxin reductase 93.6 0.12 2.6E-06 53.0 5.5 110 108-298 199-308 (503)
471 PF12800 Fer4_4: 4Fe-4S bindin 93.6 0.024 5.2E-07 31.7 0.4 16 608-626 2-17 (17)
472 PF13484 Fer4_16: 4Fe-4S doubl 93.6 0.012 2.7E-07 46.3 -1.2 47 570-625 2-66 (67)
473 TIGR03149 cyt_nit_nrfC cytochr 93.3 0.045 9.8E-07 54.4 2.1 57 565-634 122-185 (225)
474 TIGR03478 DMSO_red_II_bet DMSO 93.2 0.021 4.6E-07 58.5 -0.5 53 562-630 156-217 (321)
475 PRK10882 hydrogenase 2 protein 93.0 0.027 6E-07 58.8 -0.0 56 565-631 140-205 (328)
476 KOG0404 Thioredoxin reductase 92.9 0.36 7.7E-06 46.9 7.3 102 108-291 158-260 (322)
477 TIGR03336 IOR_alpha indolepyru 92.9 0.046 9.9E-07 62.6 1.5 50 561-628 544-595 (595)
478 PRK09477 napH quinol dehydroge 92.8 0.023 5E-07 58.2 -0.8 47 580-629 179-226 (271)
479 PRK05035 electron transport co 92.7 0.028 6E-07 64.7 -0.6 52 566-626 368-424 (695)
480 TIGR01350 lipoamide_DH dihydro 92.6 0.13 2.9E-06 56.9 4.8 101 108-287 171-271 (461)
481 COG0569 TrkA K+ transport syst 92.3 0.18 3.9E-06 50.1 4.7 52 109-166 2-62 (225)
482 PF01210 NAD_Gly3P_dh_N: NAD-d 92.1 0.19 4.2E-06 46.9 4.4 32 109-146 1-32 (157)
483 PRK02705 murD UDP-N-acetylmura 92.1 0.17 3.7E-06 56.0 4.7 34 109-148 2-35 (459)
484 COG1148 HdrA Heterodisulfide r 92.1 0.051 1.1E-06 58.3 0.5 40 106-151 123-162 (622)
485 PRK12387 formate hydrogenlyase 92.0 0.078 1.7E-06 50.8 1.6 50 579-633 11-60 (180)
486 KOG2495 NADH-dehydrogenase (ub 91.9 1 2.2E-05 48.1 9.7 38 104-147 52-89 (491)
487 PLN02976 amine oxidase 91.5 5 0.00011 49.8 16.1 39 414-455 1150-1188(1713)
488 PF02737 3HCDH_N: 3-hydroxyacy 91.4 0.23 5E-06 47.5 4.3 33 109-147 1-33 (180)
489 COG3383 Uncharacterized anaero 91.1 0.13 2.8E-06 57.9 2.3 60 561-629 142-210 (978)
490 PF02254 TrkA_N: TrkA-N domain 90.9 0.43 9.3E-06 41.7 5.2 49 110-164 1-56 (116)
491 TIGR02733 desat_CrtD C-3',4' d 90.7 0.8 1.7E-05 51.2 8.3 39 108-152 2-40 (492)
492 TIGR01582 FDH-beta formate deh 90.6 0.073 1.6E-06 54.5 -0.1 54 565-631 121-180 (283)
493 TIGR01945 rnfC electron transp 90.5 0.11 2.4E-06 57.0 1.1 53 565-626 360-417 (435)
494 PRK08493 NADH dehydrogenase su 90.4 0.13 2.7E-06 60.5 1.6 57 564-629 137-222 (819)
495 PF01262 AlaDh_PNT_C: Alanine 90.3 0.41 8.9E-06 45.2 4.7 34 107-146 20-53 (168)
496 PF02558 ApbA: Ketopantoate re 90.3 0.42 9.2E-06 44.0 4.7 31 110-146 1-31 (151)
497 PF03721 UDPG_MGDP_dh_N: UDP-g 90.1 0.26 5.7E-06 47.4 3.2 33 109-147 2-34 (185)
498 PRK09424 pntA NAD(P) transhydr 90.0 0.28 6.1E-06 54.5 3.9 35 107-147 165-199 (509)
499 PF13738 Pyr_redox_3: Pyridine 90.0 0.33 7.2E-06 46.9 4.0 34 107-146 167-200 (203)
500 COG4656 RnfC Predicted NADH:ub 89.9 0.047 1E-06 59.2 -2.2 48 569-625 366-418 (529)
No 1
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.3e-136 Score=1027.00 Aligned_cols=540 Identities=66% Similarity=1.130 Sum_probs=524.3
Q ss_pred ccccccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeee
Q 006466 100 EMCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (644)
Q Consensus 100 ~~~~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (644)
.|+|+.+++||+|||||||||+|||+|+|++++.+..++|+|+||+.++|+|++||++|+|.+++||+|+|++...|+.+
T Consensus 69 ~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t 148 (621)
T KOG2415|consen 69 NMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNT 148 (621)
T ss_pred cchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccc
Confidence 36788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcEEEeccCCccccCC--CCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc
Q 006466 180 PVSSDKFWFLTKDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (644)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~ 257 (644)
.++.+.++|+.....+.+|. +|.|+++|+++.+++.+||.++|++.||+|+++..+.++.+++||.|.||.|+|+|+.
T Consensus 149 ~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 149 PVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc
Confidence 99999999999888887764 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006466 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (644)
Q Consensus 258 ~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~ 337 (644)
+||.+|++|++|++++|+.+|+|+|+|+++.++++++|+++ ..+.+|.||+|++++|++++..+.+|.+.|++|||++
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr--~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~ 306 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR--ENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLD 306 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc--cCCCcceeccccceeEecChhhcCCcceeeeccCccc
Confidence 99999999999999999999999999999999999999999 4889999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCe
Q 006466 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (644)
Q Consensus 338 ~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v 417 (644)
..+|||+|+|++.|+.+.+|+++.+||.||+++|+++||+|++||.+++.|++++++.|++|++++||++++|++.+|+.
T Consensus 307 ~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG 386 (621)
T KOG2415|consen 307 NDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGG 386 (621)
T ss_pred CCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCC-------chHHHHHHHHHHhHHHHHHHHHhcchhhhh--cC
Q 006466 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------SNMEIYWDTLQKSWVWQELQRARNYRPAFE--YG 488 (644)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~-------~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~--~g 488 (644)
+|||++||+||....+|+|+||+||++|||+|++++... -.+..|++.++.+|+||||+.+||+|+.|+ .|
T Consensus 387 ~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~lG 466 (621)
T KOG2415|consen 387 ALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGKLG 466 (621)
T ss_pred eEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccccc
Confidence 999999999999999999999999999999999998652 225699999999999999999999999997 89
Q ss_pred ChHHHHHHHHHHHHccCCCCccccCCCCCccccchhhcCCCCCCCCCCCCccccccccccccCCcCCCCCCCcEEecCCC
Q 006466 489 LLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPK 568 (644)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~pd~~l~fd~~~~~~~~~~~~~~~~~~h~~~~~~~ 568 (644)
.|.||+++++..++++|+.||||+|++.|++.++|+++++||+||||||+||||.+|||++|+|||++||||||+++|++
T Consensus 467 ~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~~~~ 546 (621)
T KOG2415|consen 467 LYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLRDDD 546 (621)
T ss_pred cccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCcceeeCCeeEEEecCCCCc--eeEEEecCCcccCCCCcceeeeCCCCCceeeCCCCCCCCCcCCC
Q 006466 569 IPELVNLPEYAGPESRYCPARVYEYVPDEKNQ--LKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPEGGGGPGYSVM 644 (644)
Q Consensus 569 ~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~--~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~gg~g~~~~~~ 644 (644)
++.+.|++.|.+|++|||||+|||+++++.+. +++|||+||||||| |||||+|.|||+|++||||+||.|+.|
T Consensus 547 ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCK---tCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 547 IPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCK---TCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred cchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecc---cccccCcccCceeeCcCCCCCCCcccC
Confidence 99999999999999999999999999887654 49999999999999 999999999999999999999999998
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=9.4e-43 Score=376.50 Aligned_cols=391 Identities=36% Similarity=0.568 Sum_probs=306.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
++|||+||||||||++||+.|++. |++|+|+||+.++|.+..+|+.+.+..++++.+.+... +...+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~ 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE---IERKVTGAR 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh---hheeeeeeE
Confidence 579999999999999999999999 99999999999999999999999999999999888753 334445444
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
+++......+..+. ...|+++|..|++||.++|++.|++++.++++.++..++++.+.++...
T Consensus 73 ~~~~~~~~~~~~~~----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~------------- 135 (396)
T COG0644 73 IYFPGEKVAIEVPV----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAG------------- 135 (396)
T ss_pred EEecCCceEEecCC----CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcC-------------
Confidence 44442222222221 4489999999999999999999999999999999999987766555443
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEE
Q 006466 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSF 345 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~~ 345 (644)
+.+++||+||+|||.+|.+++.+ ++. ...++.+++++++.+.++ ..+...+++.++......|++|
T Consensus 136 ---~~e~~a~~vI~AdG~~s~l~~~l----g~~---~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~Gy~w 201 (396)
T COG0644 136 ---DDEVRAKVVIDADGVNSALARKL----GLK---DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGGYGW 201 (396)
T ss_pred ---CEEEEcCEEEECCCcchHHHHHh----CCC---CCChhheeEEeEEEEecC----CCCceEEEEecCCccCCCceEE
Confidence 26899999999999999988876 443 346788999999999887 3456777777777777778899
Q ss_pred EEEeCCCeEEEEEEEccCCCCCCCCcH-HHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEEccCC
Q 006466 346 LYHMNDRQIALGLVVALNYHNPFLNPY-EEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAA 424 (644)
Q Consensus 346 l~~~~~~~~~ig~~~~~d~~~~~~~~~-~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiGDAA 424 (644)
+||.+++.++||++...+. +...+. +.+++|+.||.+...+.+++.+++.++.+|.+++...| +..+|+++|||||
T Consensus 202 ifP~~~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvGDAA 278 (396)
T COG0644 202 IFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVGDAA 278 (396)
T ss_pred EEECCCceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCCEEEEeccc
Confidence 9999999999999987765 445555 88899999999999888889999999999999998777 8999999999999
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHhccccC-CchHHHHHHHHHHhHHHHHHHHHhcchhhhhcCChHHHHHHHHHHHHc
Q 006466 425 GFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYIL 503 (644)
Q Consensus 425 ~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~-~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~~g~~~~~~~~~~~~~~~ 503 (644)
++++|++|.|++.||.+|++||++|.+++.. .+.|..|++.+++++..+.+...+..+.+++ ++...+......+..
T Consensus 279 g~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (396)
T COG0644 279 GFVNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLR--LLDRTLPALIKLLAD 356 (396)
T ss_pred cCCCCcccCcHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh--HhhhhHHHHHHHHhc
Confidence 9999999999999999999999999998755 3578899999999977777777777666665 223333333332221
Q ss_pred cCCCCccccCCCCCccccchhhcCCCCCCCCCCCCcc-ccccccccccCCc
Q 006466 504 RGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLS-FDVPTSLHRSNTN 553 (644)
Q Consensus 504 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~pd~~l~-fd~~~~~~~~~~~ 553 (644)
.+...+........+.++.+...++ ++.+.+++.+.+.
T Consensus 357 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (396)
T COG0644 357 ------------KDLLGLIKKYLRKLILYPLLKGVLARFDLLKSVKRSLTA 395 (396)
T ss_pred ------------cccccccchhhhhhhHHHhhhccccHHHHHHHHHHHHhc
Confidence 1111122222344555665665555 7777776665543
No 3
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-40 Score=362.76 Aligned_cols=367 Identities=29% Similarity=0.497 Sum_probs=293.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
+||||||||||||++||+.|++. |++|+||||.+.+|....+|+.+....+.++++.+.. ..++...+..+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~------G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~~ 77 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA------GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREKI 77 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCcccccCceeecccHHHHcccccc-cCCccccccceeE
Confidence 59999999999999999999999 9999999999988876677888877777777765432 3344445555556
Q ss_pred EEeccCCccccC--CC---CCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 187 WFLTKDRAFSLP--SP---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 187 ~~~~~~~~~~~~--~~---~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
.++..+....++ .. ......|.+.|..|.++|.+++++.|++++.+++|+++..++ +.+.+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~--------- 147 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAG--------- 147 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeC---------
Confidence 665544332222 11 112347899999999999999999999999999999988765 556666654
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCC--------CCCcEEEEec
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEILHTLG 333 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~g~~~h~~g 333 (644)
+.+++||+||+|+|.+|.+++.+ ++. ....+..+.+++++.+.++.... ..+...+..|
T Consensus 148 -------~~~i~A~~VI~AdG~~s~v~~~l----g~~--~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g 214 (429)
T PRK10015 148 -------DDILEANVVILADGVNSMLGRSL----GMV--PASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAG 214 (429)
T ss_pred -------CeEEECCEEEEccCcchhhhccc----CCC--cCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecC
Confidence 25799999999999999887754 554 24567788899998877653321 2355667777
Q ss_pred cCCCCCCcceEEEEEeCCCeEEEEEEEcc-CCCCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcc
Q 006466 334 WPLDQKTYGGSFLYHMNDRQIALGLVVAL-NYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (644)
Q Consensus 334 ~~~~~~~~g~~~l~~~~~~~~~ig~~~~~-d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~ 412 (644)
++. .+.+|++|+|+..+ .++||++... ++.+...++.+.+++|+.||.+++++++++.+++.+..+|.+++..+|++
T Consensus 215 ~~~-~g~~g~G~~~~~~d-~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~ 292 (429)
T PRK10015 215 SPS-DGLMGGGFLYTNKD-SISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQL 292 (429)
T ss_pred ccC-CCCCCceEEEEcCC-cEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCcc
Confidence 765 44677899999865 7899997654 33344567888899999999999999999999999999999999888999
Q ss_pred cCCCeEEEccCCcccCC--CCCcchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 413 VFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 413 ~~~~v~LiGDAA~~~~P--~~g~G~~~A~~sa~~lA~~l~~~l~~----~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
+.+|+++|||||++++| ++|+|+++||.||.+||+++.+++.. ...|..|++.++++++.++++..+++..+|.
T Consensus 293 ~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~ 372 (429)
T PRK10015 293 VNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALME 372 (429)
T ss_pred ccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhc
Confidence 99999999999999985 69999999999999999999998764 3578999999999999999999999999994
Q ss_pred ----cCChHHHHHHHHHHHHccC
Q 006466 487 ----YGLLPGLAICGLEHYILRG 505 (644)
Q Consensus 487 ----~g~~~~~~~~~~~~~~~~~ 505 (644)
+..|+.++...+..++...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ 395 (429)
T PRK10015 373 NPRLFSQYPRMVADIMNDMFTID 395 (429)
T ss_pred CccHHHHHHHHHHHHHHHhcccC
Confidence 3668889999998887643
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=2.8e-38 Score=344.52 Aligned_cols=366 Identities=27% Similarity=0.479 Sum_probs=287.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
.||||||||||||++||+.|++. |++|+||||.+.++....+|+.+....++++++.+... .++...+..+.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~------G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~-~~~~~~~~~~~~ 77 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE------GAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS-APVERLITHEKL 77 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC------CCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc-CcccceeeeeeE
Confidence 59999999999999999999999 99999999999888777788888888888887765432 333323333344
Q ss_pred EEeccCCccccC--CC---CCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 187 WFLTKDRAFSLP--SP---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 187 ~~~~~~~~~~~~--~~---~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
.++.....+.+. .. ......|.+.|..|.++|.+++++.|++|+.+++|++++.++ +.+++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~--------- 147 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEAD--------- 147 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcC---------
Confidence 444433322221 11 112246889999999999999999999999999999998765 556555532
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCC--------CCCCcEEEEec
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--------HNPGEILHTLG 333 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~g~~~h~~g 333 (644)
|.++.||+||+|+|.+|.++++ +++.. ...+...++++++.++++... ...+.+.++.+
T Consensus 148 -------g~~i~A~~VI~A~G~~s~l~~~----lgl~~--~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 214 (428)
T PRK10157 148 -------GDVIEAKTVILADGVNSILAEK----LGMAK--RVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAG 214 (428)
T ss_pred -------CcEEECCEEEEEeCCCHHHHHH----cCCCC--CCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEE
Confidence 4579999999999999876664 46652 345667788888877665321 12455667777
Q ss_pred cCCCCCCcceEEEEEeCCCeEEEEEEEccCC-CCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcc
Q 006466 334 WPLDQKTYGGSFLYHMNDRQIALGLVVALNY-HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (644)
Q Consensus 334 ~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d~-~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~ 412 (644)
.+. .+.+|++|+|+.. +.++||++...+. .+....+.+.++.|+.||.++..+++++.++|.+..+|.+++...|++
T Consensus 215 ~~~-~g~~ggG~~~~~~-~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~ 292 (428)
T PRK10157 215 SPT-DGLMGGGFLYTNE-NTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPEL 292 (428)
T ss_pred CCC-CCCcCceeEEEcC-CeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCce
Confidence 774 4578889999865 4889999876543 223456788889999999999999988888998888999998888899
Q ss_pred cCCCeEEEccCCcccCC--CCCcchHHHHHHHHHHHHHHhccccCC----chHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 413 VFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHED----SNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 413 ~~~~v~LiGDAA~~~~P--~~g~G~~~A~~sa~~lA~~l~~~l~~~----~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
..+|+++|||||++++| +.|+|++.||.+|.+||+++.+++..+ ..|..|++.++++ +.++++..+++..+++
T Consensus 293 ~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~~ 371 (428)
T PRK10157 293 VGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFLD 371 (428)
T ss_pred ecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccHHHhc
Confidence 99999999999999998 599999999999999999999987652 5799999999998 8899999999999884
Q ss_pred ----cCChHHHHHHHHHHHHccC
Q 006466 487 ----YGLLPGLAICGLEHYILRG 505 (644)
Q Consensus 487 ----~g~~~~~~~~~~~~~~~~~ 505 (644)
+..||.++...+..++...
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~ 394 (428)
T PRK10157 372 NPRMFSGYPELAVGVARDLFTID 394 (428)
T ss_pred CccHHHHHHHHHHHHHHHheeeC
Confidence 4678999999988887643
No 5
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=100.00 E-value=7.3e-39 Score=271.63 Aligned_cols=109 Identities=61% Similarity=1.059 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHHccCCCCccccCCCCCccccchhhcCCCCCCCCCCCCccccccccccccCCcCCCCCCCcEEecCC
Q 006466 488 GLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDP 567 (644)
Q Consensus 488 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~y~~pd~~l~fd~~~~~~~~~~~~~~~~~~h~~~~~~ 567 (644)
|+|.|+++.++++++++|+.||++++.++|++.+++++.+++|+||||||+||||++||||+|||+|+|||||||+|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCcceeeCCeeEEEecC
Q 006466 568 KIPELVNLPEYAGPESRYCPARVYEYVPD 596 (644)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~cpa~~y~~~~~ 596 (644)
++|++.|+++|++||+|||||+|||++++
T Consensus 81 ~i~~~~~~~~y~~P~qryCPAgVYE~v~~ 109 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPEQRYCPAGVYEIVED 109 (110)
T ss_dssp THHHHTHHHHHS-THHHH-TTS-EEEE--
T ss_pred ChhhhhhhhhhcChhhhcCcceeEEEecc
Confidence 99999999999999999999999999875
No 6
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.2e-30 Score=284.74 Aligned_cols=337 Identities=19% Similarity=0.235 Sum_probs=219.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccC
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (644)
..+.|||+||||||||+++|+.|++. |++|+|+||.... ...+|+.+....+.++ .-+. ......+
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~------G~~VlllEr~~~~--~k~cgg~i~~~~l~~l-gl~~---~~~~~~i-- 101 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG------GIETFLIERKLDN--AKPCGGAIPLCMVGEF-DLPL---DIIDRKV-- 101 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCC--CCCccccccHhHHhhh-cCcH---HHHHHHh--
Confidence 34579999999999999999999999 9999999998642 2347777776655443 1110 0000111
Q ss_pred CcEEEecc-CCccccCCCCCCCCcE--EEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCC-CcEEEEEeCcCcc-cc
Q 006466 184 DKFWFLTK-DRAFSLPSPFSNRGNY--VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMGI-AK 258 (644)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~~~~--~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~-g~v~gV~~~d~g~-~~ 258 (644)
..+.+... ...+.++.... ...| +++|..|.++|.++|++.|++++.+ .++++..+++ +..+.|++.+... ..
T Consensus 102 ~~~~~~~p~~~~v~~~~~~~-~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~ 179 (450)
T PLN00093 102 TKMKMISPSNVAVDIGKTLK-PHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSG 179 (450)
T ss_pred hhheEecCCceEEEecccCC-CCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEecccccc
Confidence 11122221 12222221111 1233 4899999999999999999999876 4777764321 1222455432100 01
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCC--CCCCCcEEEEeccCC
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGWPL 336 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~g~~~h~~g~~~ 336 (644)
+|+ +.+++||+||+|||.+|.+++.+ ++. ...+.++++..+.++.. ....+.+..+++...
T Consensus 180 ~g~-------~~~v~a~~VIgADG~~S~vrr~l----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 242 (450)
T PLN00093 180 AGT-------PKTLEVDAVIGADGANSRVAKDI----DAG------DYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDV 242 (450)
T ss_pred CCC-------ccEEEeCEEEEcCCcchHHHHHh----CCC------CcceeEEEEEEEeCChhhccccCCeEEEEeCCCC
Confidence 122 35799999999999999999876 333 13456777765555542 233445555666555
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCC
Q 006466 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~ 416 (644)
.++. ++|+||.++ .+.||+..... . .+..+.++.+... +...+.+++.+......+|.+ ..+++..+|
T Consensus 243 ~p~~--Y~WifP~g~-~~~VG~g~~~~--~--~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~ip~~---~~~~~~~~~ 310 (450)
T PLN00093 243 SPDF--YGWVFPKCD-HVAVGTGTVVN--K--PAIKKYQRATRNR--AKDKIAGGKIIRVEAHPIPEH---PRPRRVRGR 310 (450)
T ss_pred CCCc--eEEEEECCC-cEEEEEEEccC--C--CChHHHHHHHHHH--hhhhcCCCeEEEEEEEEcccc---cccceeCCC
Confidence 5553 489999985 56888764321 1 1222222233211 122344455565555556653 345788899
Q ss_pred eEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
++|||||||+++|++|+|++.||.+|.+||+++.+++.. ...|+.|+++|++. +.++++....++.+|.
T Consensus 311 vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~-~g~~~~~~~~l~~~~~ 385 (450)
T PLN00093 311 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKK-YWPTYKVLDILQKVFY 385 (450)
T ss_pred cEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999987643 24689999999976 7888988888888874
No 7
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=1.3e-29 Score=274.01 Aligned_cols=334 Identities=17% Similarity=0.208 Sum_probs=214.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
+||+||||||||++||+.|++. |++|+||||....+. .||+.++...+.++ .-+. ...... ...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~------G~~V~llE~~~~~~~--~cg~~i~~~~l~~~-g~~~---~~~~~~--i~~~~ 66 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA------GIQTFLLERKPDNAK--PCGGAIPLCMVDEF-ALPR---DIIDRR--VTKMK 66 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCcEEEEecCCCCCC--CccccccHhhHhhc-cCch---hHHHhh--hceeE
Confidence 5899999999999999999999 999999999876543 36777776665443 1000 000000 11122
Q ss_pred Eecc-CCccccCCCCCCCC-cEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcC-CCcEEEEEeCcCc-cccCCCcc
Q 006466 188 FLTK-DRAFSLPSPFSNRG-NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMG-IAKDGSKK 263 (644)
Q Consensus 188 ~~~~-~~~~~~~~~~~~~~-~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~-~g~v~gV~~~d~g-~~~~G~~~ 263 (644)
+... ...+.+.......+ .+.++|..|.++|.++|.+.|++++.++ ++++.... .+..++|++.... ....|+
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~-- 143 (398)
T TIGR02028 67 MISPSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGT-- 143 (398)
T ss_pred EecCCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCC--
Confidence 2221 11222221111111 2369999999999999999999998885 77765421 1233455542200 001122
Q ss_pred cccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCC--CCCCcEEEEeccCCCCCCc
Q 006466 264 ENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTY 341 (644)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~g~~~h~~g~~~~~~~~ 341 (644)
+.+++||+||+|||.+|.+++.+ ++. ...+...+...+.++... ...+.+..+++....++
T Consensus 144 -----~~~i~a~~VIgADG~~S~v~~~~----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~-- 206 (398)
T TIGR02028 144 -----RCTLEVDAVIGADGANSRVAKEI----DAG------DYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPD-- 206 (398)
T ss_pred -----ccEEEeCEEEECCCcchHHHHHh----CCC------CcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCC--
Confidence 25799999999999999999875 433 123455666555554332 22334444555444454
Q ss_pred ceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEEc
Q 006466 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (644)
Q Consensus 342 g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiG 421 (644)
++.|+||.++ .+.||+.... . ....+.+..+.... ....+.+++.+......+|.+. .+++..+|++|||
T Consensus 207 gY~WifP~~~-~~~VG~g~~~----~-~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~~---~~~~~~~~~llvG 276 (398)
T TIGR02028 207 FYGWVFPKCD-HVAVGTGTVA----A-KPEIKRLQSGIRAR-AAGKVAGGRIIRVEAHPIPEHP---RPRRVVGRVALVG 276 (398)
T ss_pred ceEEEEECCC-eEEEEEEeCC----C-CccHHHHHHhhhhh-hhhccCCCcEEEEEEEeccccc---cccEECCCEEEEE
Confidence 3589999985 5678876421 1 11223333332211 1122334455555444565532 3578889999999
Q ss_pred cCCcccCCCCCcchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 422 DAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
||||+++|++|+|+++||.+|.+||+++.+++.. ...|+.|++++++. +.++++....++.+|.
T Consensus 277 DAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~~ 346 (398)
T TIGR02028 277 DAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKE-YRPTYRVLDLLQRVFY 346 (398)
T ss_pred cCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999987643 25699999999976 7889999988888874
No 8
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=1.5e-29 Score=273.33 Aligned_cols=325 Identities=18% Similarity=0.274 Sum_probs=211.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH-h-hhhhhcCCCeeeeccCCc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-L-PQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l-~-~~~~~~~~~~~~~~~~~~ 185 (644)
|||+||||||||+++|+.|++. |++|+|+||.. +....+|+.+++..++++ + +.+.. .. -..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~------G~~V~l~E~~~--~~~~~cg~~i~~~~l~~l~i~~~~~~------~~--~~~ 64 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA------GIETILLERAL--SNIKPCGGAIPPCLIEEFDIPDSLID------RR--VTQ 64 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCC--CCcCcCcCCcCHhhhhhcCCchHHHh------hh--cce
Confidence 7999999999999999999999 99999999982 223347888887665443 1 11111 01 112
Q ss_pred EEEeccCC-ccccCCCCCCCCcE--EEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc-cCCC
Q 006466 186 FWFLTKDR-AFSLPSPFSNRGNY--VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA-KDGS 261 (644)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~--~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~-~~G~ 261 (644)
..+..... .+... +.....| .++|..|.++|.++|.+.|++++.+ .|+++..++++ + .|++.+ +.. .+|+
T Consensus 65 ~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~-~~~~~~~~ 138 (388)
T TIGR02023 65 MRMISPSRVPIKVT--IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRT-PKKGAGGE 138 (388)
T ss_pred eEEEcCCCceeeec--cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEe-ccccCCCc
Confidence 22322221 11111 1111234 5899999999999999999999866 58898776643 3 455432 100 0111
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCC--CCCCCcEEEEeccCCCCC
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGWPLDQK 339 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~g~~~h~~g~~~~~~ 339 (644)
..+++||+||+|||.+|.+++++ ++.. +..+..+++..+.++.. ...++....+++.+..++
T Consensus 139 -------~~~i~a~~VI~AdG~~S~v~r~l----g~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 202 (388)
T TIGR02023 139 -------KGSVEADVVIGADGANSPVAKEL----GLPK-----NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPD 202 (388)
T ss_pred -------ceEEEeCEEEECCCCCcHHHHHc----CCCC-----CCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCC
Confidence 25799999999999999988864 4431 23345566655544432 123444444555555554
Q ss_pred CcceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCeEE
Q 006466 340 TYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (644)
Q Consensus 340 ~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~L 419 (644)
++.|+||.++ .+.+|...... .....+.++.+..... ++..+.+......++.. ..+++..+++++
T Consensus 203 --~y~wv~P~~~-~~~vg~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~~---~~~~~~~~~v~l 268 (388)
T TIGR02023 203 --FYGWVFPKGD-HIAVGTGTGTH----GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPMK---PRPRWDFGRAML 268 (388)
T ss_pred --ceEEEeeCCC-eeEEeEEECCC----CCCHHHHHHHHHHhhC----CCCceEeeeeeEecccc---ccccccCCCEEE
Confidence 3589999975 57788764311 1233333444443221 22333443333345442 346788899999
Q ss_pred EccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHHhHHHHHHHHHhcchhhh
Q 006466 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 420 iGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~--~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~ 485 (644)
||||||+++|++|+|+++||.+|.+||++|.+++.. ...|+.|++.+++. +.+++...+.++.++
T Consensus 269 vGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~-~~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 269 VGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKL-YGTTFRVLRVLQMVY 335 (388)
T ss_pred EeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998754 35699999999976 666776665555554
No 9
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=1.1e-28 Score=256.02 Aligned_cols=293 Identities=24% Similarity=0.286 Sum_probs=195.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
|||+||||||+|+++|+.|++. |++|+||||.+..+. ..++..+.++.+..+ ..+... ... ......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~------g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~--~~~---~~~~~~ 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK------GLRVLLLEKKSFPRY-KPCGGALSPRVLEEL-DLPLEL--IVN---LVRGAR 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCc-ccccCccCHhHHHHh-cCCchh--hhh---heeeEE
Confidence 6999999999999999999999 999999999987654 456777777666433 211110 000 011112
Q ss_pred EeccCC-ccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 188 FLTKDR-AFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
+..... .+..+ ......+.++|..+.++|.+.+++.|++++++++|+++..++++ + .+.+.+
T Consensus 68 ~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~------------- 130 (295)
T TIGR02032 68 FFSPNGDSVEIP--IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRG------------- 130 (295)
T ss_pred EEcCCCcEEEec--cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcC-------------
Confidence 222111 11111 11234577999999999999999999999999999999877643 3 243322
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 006466 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~~l 346 (644)
++.+++||+||+|+|.+|.+++++ ++.. .+..++.++...+..+.....+.....+.++...+. +..|+
T Consensus 131 -~~~~~~a~~vv~a~G~~s~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 199 (295)
T TIGR02032 131 -GEGTVTAKIVIGADGSRSIVAKKL----GLRK----EPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPG--GYGWV 199 (295)
T ss_pred -ccEEEEeCEEEECCCcchHHHHhc----CCCC----CCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCC--ceEEE
Confidence 136799999999999999877754 5442 234455566555555443333444444444433333 44899
Q ss_pred EEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhh-cCCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEEccCCc
Q 006466 347 YHMNDRQIALGLVVALNYHNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAG 425 (644)
Q Consensus 347 ~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiGDAA~ 425 (644)
+|.+++.+.+++...... +..+..+.++.+. .+|. ++..+.++.....++... ..+++..+|++++|||||
T Consensus 200 ~P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~ 271 (295)
T TIGR02032 200 FPKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAG 271 (295)
T ss_pred EeCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEecccC
Confidence 999999889988765432 2345566777664 4444 333334433222344322 345788899999999999
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHH
Q 006466 426 FLNVPKIKGTHTAMKSGMLAAEAG 449 (644)
Q Consensus 426 ~~~P~~g~G~~~A~~sa~~lA~~l 449 (644)
+++|+.|+|+++||+||.+||++|
T Consensus 272 ~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 272 HVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCCccCCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999875
No 10
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=6.3e-28 Score=260.79 Aligned_cols=341 Identities=16% Similarity=0.151 Sum_probs=202.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeee-ccCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP-VSSD 184 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~-~~~~ 184 (644)
..+||+||||||+||++|+.|++. |++|+|+||.+...... .+..+.+.++. ++..++..+...... ....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~-~~~~l~~~~~~-~L~~lGl~~~~~~~~~~~~~ 75 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR------GHSVTVVERAARNRAQN-GADLLKPSGIG-VVRAMGLLDDVFAAGGLRRD 75 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc------CCcEEEEeCCCcccCCC-cccccCccHHH-HHHHcCCHHHHHhccccccc
Confidence 458999999999999999999999 99999999998764211 23346665553 333322211100000 0111
Q ss_pred cEEEeccCCc-cccCCCC-CCCC-cEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 185 KFWFLTKDRA-FSLPSPF-SNRG-NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~-~~~~-~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
.+.+...... ..++... ...+ ...++|..|.+.|.+.+.+ .|++++++++++++..++++.++.|++.+
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------- 148 (388)
T PRK07045 76 AMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD------- 148 (388)
T ss_pred ceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC-------
Confidence 2222211111 1111111 1112 2457899999999999865 57999999999999988777666777765
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~ 340 (644)
|.++.+|+||+|||.+|.+|+++. ++.............+.. ...... ......+++. .
T Consensus 149 --------g~~~~~~~vIgADG~~S~vR~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~---~-- 207 (388)
T PRK07045 149 --------GERVAPTVLVGADGARSMIRDDVL---RMPAERVPYATPMAFGTI---ALTDSV--RECNRLYVDS---N-- 207 (388)
T ss_pred --------CCEEECCEEEECCCCChHHHHHhh---CCCcccCCCCcceeEEEE---eccCCc--cccceEEEcC---C--
Confidence 678999999999999999999762 332101111122222221 111111 1111111211 1
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCC---CcHHHHHHhhcC--CcchhcccCCc-eeeecceeeecCCcccCCcccC
Q 006466 341 YGGSFLYHMNDRQIALGLVVALNYHNPFL---NPYEEFQKFKHH--PAIKPLLEGGT-VVQYGARTLNEGGLQSIPYPVF 414 (644)
Q Consensus 341 ~g~~~l~~~~~~~~~ig~~~~~d~~~~~~---~~~~~~~~~~~~--p~i~~~l~~~~-~i~~~~~~i~~gg~~~~~~~~~ 414 (644)
.+..|+||..++...+.+....+....+. ...+..+.+... +.+.+.++... ...+. ..+.. ...+++|+.
T Consensus 208 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 284 (388)
T PRK07045 208 QGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLG-RMNLDRYHK 284 (388)
T ss_pred CceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecC-ccccccccC
Confidence 13357889887776666654332211111 111222222221 22222222110 01111 11111 124568889
Q ss_pred CCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~----~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
+|++|||||||.++|+.|||+++||+||..||++|...+.. ..+|+.|+++++.. ....+..++.+...|+
T Consensus 285 grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 359 (388)
T PRK07045 285 RNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTYH 359 (388)
T ss_pred CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhcc
Confidence 99999999999999999999999999999999999876543 36899999999864 6666666666666664
No 11
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=4e-28 Score=261.89 Aligned_cols=336 Identities=20% Similarity=0.190 Sum_probs=204.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC-CCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~-~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
.+||+||||||+||++|+.|++. |++|+||||.+ ..-. ...+..+.+.++ +++..++..............
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~------G~~V~l~E~~~~~~~~-~~r~~~l~~~~~-~~L~~lG~~~~i~~~~~~~~~ 73 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA------GLDVTLLERAPRELLE-RGRGIALSPNAL-RALERLGLWDRLEALGVPPLH 73 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC------CCcEEEEccCcccccc-CceeeeecHhHH-HHHHHcCChhhhhhccCCcee
Confidence 57999999999999999999999 99999999982 3222 124667777766 444444431111111111111
Q ss_pred EEEec-cC-CccccCC--CCCCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeC-cCccccC
Q 006466 186 FWFLT-KD-RAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTN-DMGIAKD 259 (644)
Q Consensus 186 ~~~~~-~~-~~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~-d~g~~~~ 259 (644)
...+. .. ..+.+.. .......+.+.+..|.+.|.+.+.+.+ |+++.+++|+.+..++++ |. |++. |
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~-v~l~~d------ 145 (387)
T COG0654 74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VT-VTLSFD------ 145 (387)
T ss_pred eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eE-EEEcCC------
Confidence 11111 11 1122221 112345789999999999999999887 999999999999988744 53 6665 5
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006466 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~ 339 (644)
|.+++||+||+|||.+|.+|+.+ +... .....|....- ...+.......+.....+. ..
T Consensus 146 ---------G~~~~a~llVgADG~~S~vR~~~----~~~~---~~~~~y~~~~l-~~~~~~~~~~~~~~~~~~~---~~- 204 (387)
T COG0654 146 ---------GETLDADLLVGADGANSAVRRAA----GIAE---FSGRDYGQTAL-VANVEPEEPHEGRAGERFT---HA- 204 (387)
T ss_pred ---------CcEEecCEEEECCCCchHHHHhc----CCCC---ccCCCCCceEE-EEEeecCCCCCCeEEEEec---CC-
Confidence 67899999999999999999976 3221 11112221111 1111111122232222221 11
Q ss_pred CcceEEEEEeCCCeEEEEEEEccCC--CCCCCCcHHHHHHhh-cCCcchhcccCCceeeecce-eeecCCcccCCcccCC
Q 006466 340 TYGGSFLYHMNDRQIALGLVVALNY--HNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGAR-TLNEGGLQSIPYPVFP 415 (644)
Q Consensus 340 ~~g~~~l~~~~~~~~~ig~~~~~d~--~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~i~~~~~-~i~~gg~~~~~~~~~~ 415 (644)
+..-++|..++...+.+...... ........+....+. ..+.... +. .....+.+ .++.. .....+|..+
T Consensus 205 --~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~pl~-~~~a~~~~~~ 278 (387)
T COG0654 205 --GPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-LG--RVTLVSSRSAFPLS-LRVAERYRRG 278 (387)
T ss_pred --CceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-cc--eEEEcccccccccc-chhhhheecC
Confidence 22457788755555554443211 111122222212221 1111111 10 11111111 11111 1233467779
Q ss_pred CeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
|++|+|||||.++|+.|||+|+||+|+..||+.|.+.... ...|+.|+++++.. +.+....++.+...|.
T Consensus 279 Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 351 (387)
T COG0654 279 RVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLFS 351 (387)
T ss_pred cEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999998763 57899999999875 8888888887766664
No 12
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.96 E-value=6e-29 Score=264.43 Aligned_cols=330 Identities=19% Similarity=0.217 Sum_probs=183.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeee--ccCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP--VSSD 184 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~--~~~~ 184 (644)
++||+||||||+||++|+.|++. |++|+||||.+...... .|..+.+.++ +++..++......... ....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~~~~~~~-~~~~l~~~~~-~~l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA------GIDVTIIERRPDPRPKG-RGIGLSPNSL-RILQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT------TCEEEEEESSSSCCCSS-SSEEEEHHHH-HHHHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc------ccccccchhcccccccc-cccccccccc-cccccccchhhhhhhcccccce
Confidence 47999999999999999999999 99999999998764432 5666777765 3444332211100000 0000
Q ss_pred cEEEecc-----------CCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006466 185 KFWFLTK-----------DRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (644)
Q Consensus 185 ~~~~~~~-----------~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d 253 (644)
...+... .....+.........+.+.|..|.++|.+.+++.|++|+++++++++..++++....+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~- 151 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG- 151 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET-
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc-
Confidence 0000000 0001111112223457789999999999999999999999999999988875532222222
Q ss_pred CccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEE-eecCCCCCCCcEEEEe
Q 006466 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW-EIDEGKHNPGEILHTL 332 (644)
Q Consensus 254 ~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~~h~~ 332 (644)
.+|+ ..+++||+||+|||.+|.+|+++ +... ......+..+...+. .........+ ..+.
T Consensus 152 ----~~g~-------~~~i~adlvVgADG~~S~vR~~l----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 212 (356)
T PF01494_consen 152 ----EDGE-------EETIEADLVVGADGAHSKVRKQL----GIDR--PGPDTVYRWGWFGIVFDSDLSDPWED--HCFI 212 (356)
T ss_dssp ----CTCE-------EEEEEESEEEE-SGTT-HHHHHT----TGGE--EEEEEEEEEEEEEEEEECHSHTTTSC--EEEE
T ss_pred ----cCCc-------eeEEEEeeeecccCcccchhhhc----cccc--cCcccccccccccccccccccccccc--cccc
Confidence 2232 25799999999999999999976 3321 011111112221111 1111111122 1111
Q ss_pred ccCCCCCCcceEEEEEeCC-CeEEEEEEEccCCCCCCCC----cHHHHHHhhcCCcchhcccCCceeeecceeeecCCcc
Q 006466 333 GWPLDQKTYGGSFLYHMND-RQIALGLVVALNYHNPFLN----PYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQ 407 (644)
Q Consensus 333 g~~~~~~~~g~~~l~~~~~-~~~~ig~~~~~d~~~~~~~----~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~ 407 (644)
..+ ..++.+++|..+ +...+.+....+....... +.+.++.+... +....-........ .++.. ..
T Consensus 213 ~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~-~~ 283 (356)
T PF01494_consen 213 YSP----PSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEI--FGPDLLETEIDEIS--AWPIP-QR 283 (356)
T ss_dssp EEE----TTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHH--HHTCHHHHEEEEEE--EEEEE-EE
T ss_pred ccc----cccceeEeeccCCccceEEEeeecccccccccccccccccccccccc--cccccccccccccc--ccccc-cc
Confidence 111 112346888877 4433333333332211111 11222222211 11000000111111 11111 11
Q ss_pred cCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHH
Q 006466 408 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQE 474 (644)
Q Consensus 408 ~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~ 474 (644)
..++|..+|++|||||||.|+|+.|||+++||+||..||+.|...... ++.|+.|+++++.+ ..+.
T Consensus 284 ~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~-~~~~ 352 (356)
T PF01494_consen 284 VADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPR-ARKA 352 (356)
T ss_dssp EESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH-HHHH
T ss_pred cccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HHHH
Confidence 335788899999999999999999999999999999999999988763 35799999999875 4433
No 13
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=261.08 Aligned_cols=332 Identities=19% Similarity=0.218 Sum_probs=192.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.||+||||||+||++|+.|++. |++|+|+||.+.+.. ...|..+.++++.. +..++..+...........+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~-L~~lgl~~~l~~~~~~~~~~~ 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR------GIEVVVFEAAPELRP-LGVGINLLPHAVRE-LAELGLLDALDAIGIRTRELA 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCcccc-cCcceeeCchHHHH-HHHCCCHHHHHhhCCCCcceE
Confidence 3899999999999999999999 999999999987652 23445566666532 222221111001111112222
Q ss_pred EeccCCcc--ccCCC---CCCCCcEEEcHHHHHHHHHHHHHh-cC-CEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 188 FLTKDRAF--SLPSP---FSNRGNYVISLSQLVRWLGGKAEE-LG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 188 ~~~~~~~~--~~~~~---~~~~~~~~v~r~~l~~~L~~~a~~-~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
+.+..... ..+.. ......+.++|..|.+.|.+.+.+ .| ++|+++++|+++..++++.+ +.+.+ ..+|
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~---~~~g 147 (413)
T PRK07538 73 YFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGD---RAGG 147 (413)
T ss_pred EEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEec---cCCC
Confidence 32211111 11110 011234679999999999999866 47 57999999999988776644 33332 0122
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEe--ecCCCCCCCcEEEEeccCCCC
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWE--IDEGKHNPGEILHTLGWPLDQ 338 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~g~~~h~~g~~~~~ 338 (644)
+ +.+++||+||+|||.+|.+|+++. ... ..+... |+. .|. ++......+.....++..
T Consensus 148 ~-------~~~~~adlvIgADG~~S~vR~~l~----~~~---~~~~~~--g~~-~~~~~~~~~~~~~~~~~~~~g~~--- 207 (413)
T PRK07538 148 D-------LVSVRGDVLIGADGIHSAVRAQLY----PDE---GPPRWN--GVM-MWRGVTEAPPFLTGRSMVMAGHL--- 207 (413)
T ss_pred c-------cceEEeeEEEECCCCCHHHhhhhc----CCC---CCCccc--ceE-EEEEeecCccccCCCcEEEEcCC---
Confidence 2 368999999999999999999762 111 111111 111 111 111112222222222221
Q ss_pred CCcceEEEEEeCCC-------eEEEEEEEccC---CCC-----CCCCcHHHHHHhhcC-C---cchhcccCC-ceeeecc
Q 006466 339 KTYGGSFLYHMNDR-------QIALGLVVALN---YHN-----PFLNPYEEFQKFKHH-P---AIKPLLEGG-TVVQYGA 398 (644)
Q Consensus 339 ~~~g~~~l~~~~~~-------~~~ig~~~~~d---~~~-----~~~~~~~~~~~~~~~-p---~i~~~l~~~-~~i~~~~ 398 (644)
+ +..++||..++ .+.+.+....+ ... ......+.++.|... + .+.++++.. ....|
T Consensus 208 ~--~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 283 (413)
T PRK07538 208 D--GKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEY-- 283 (413)
T ss_pred C--CEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeec--
Confidence 1 22456665432 22222222111 000 111122223333221 1 133444422 22222
Q ss_pred eeeecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHhHHHHHHHHH
Q 006466 399 RTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRA 478 (644)
Q Consensus 399 ~~i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~~~l~~Ye~~~~~~~~~~~l~~~ 478 (644)
+.....++++|+.+|++|||||||.|+|+.|||+++||+||..||+.|.+.-....+|+.||++++.. +.+.+..+
T Consensus 284 ---p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~~~~~~aL~~Ye~~R~~~-~~~~~~~s 359 (413)
T PRK07538 284 ---PMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPEAALAAYEAERRPA-TAQIVLAN 359 (413)
T ss_pred ---cccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhHH-HHHHHHHh
Confidence 11222356789999999999999999999999999999999999999987533357899999999976 77777776
Q ss_pred hc
Q 006466 479 RN 480 (644)
Q Consensus 479 r~ 480 (644)
+.
T Consensus 360 ~~ 361 (413)
T PRK07538 360 RL 361 (413)
T ss_pred hh
Confidence 66
No 14
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=9.9e-28 Score=257.82 Aligned_cols=329 Identities=13% Similarity=0.141 Sum_probs=196.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc---ccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH---IISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~---~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
+||+||||||+|+++|+.|++. |++|+|+|+.+..... ...+..+.+.++ +++..++..+..........
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~~~~~~~ 74 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK------GIKTTIFESKSVKSPEFFKDIRTTALTPHSK-NFLFSIDIWEELEKFVAEMQ 74 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC------CCeEEEecCCCCCCCccCcCceEEEeCHHHH-HHHHHCCcHHHHHhhcCCCc
Confidence 6999999999999999999999 9999999997532111 123555677654 23333221100000011112
Q ss_pred cEEEeccC--CccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 185 KFWFLTKD--RAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 185 ~~~~~~~~--~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
.+.+.+.. ..+.++.......+|.+.|..|.+.|.+++.+.+ ++++++++++++..++++ + .|.+.+
T Consensus 75 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~-------- 144 (374)
T PRK06617 75 DIYVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDD-------- 144 (374)
T ss_pred EEEEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcC--------
Confidence 22222211 1122222111123689999999999999998876 999999999999887754 3 466644
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCc-EEEEeccCCCCCC
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGE-ILHTLGWPLDQKT 340 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~-~~h~~g~~~~~~~ 340 (644)
+ +++||+||+|||.+|.+|+.+ +... .. ..|..++ .+.++......+. ..++. .
T Consensus 145 -------~-~~~adlvIgADG~~S~vR~~l----~~~~--~~--~~y~~~~--~~~v~~~~~~~~~~~~~~~-------~ 199 (374)
T PRK06617 145 -------K-QIKCNLLIICDGANSKVRSHY----FANE--IE--KPYQTAL--TFNIKHEKPHENCAMEHFL-------P 199 (374)
T ss_pred -------C-EEeeCEEEEeCCCCchhHHhc----CCCc--cc--ccCCeEE--EEEEeccCCCCCEEEEEec-------C
Confidence 4 799999999999999999865 3331 11 1122222 2233322222222 12221 1
Q ss_pred cceEEEEEeCCCe-EEEEEEEccCCCCC-CCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCeE
Q 006466 341 YGGSFLYHMNDRQ-IALGLVVALNYHNP-FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 418 (644)
Q Consensus 341 ~g~~~l~~~~~~~-~~ig~~~~~d~~~~-~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~ 418 (644)
.|..+++|..++. ..+.+....+.... ...+.+.+..... +.+...+..-. .......++-.. ...++|+.+|++
T Consensus 200 ~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~-~~~~~~~~~l~~-~~~~~~~~grv~ 276 (374)
T PRK06617 200 LGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQ-RNAGNSLGKIT-IDSEISSFPLKA-RIANRYFHNRIV 276 (374)
T ss_pred CCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHH-HhhchhcCcee-eccceeEEEeee-eeccceecCCEE
Confidence 1336788988765 33333321110000 0112223322211 11111111100 000001111111 134689999999
Q ss_pred EEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
|+|||||.++|..|||+|+||+||..||+.|.. ...|++||+.++.. ....+..++.+..+|.
T Consensus 277 LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 277 LIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----NGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred EEEcccccCCCCccccHHHHHHHHHHHHHHHcC----cchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998842 35899999999875 7788888888888875
No 15
>PRK08013 oxidoreductase; Provisional
Probab=99.96 E-value=9.8e-28 Score=260.19 Aligned_cols=336 Identities=15% Similarity=0.109 Sum_probs=196.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-----cccCccChHHHHHHhhhhhhcCCCeee-e
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-----ISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-----~~g~~i~~~~l~~l~~~~~~~~~~~~~-~ 180 (644)
.+||+||||||+|+++|+.|++. |++|+||||.+.+.... ..+..+.+.++ +++..++..+..... .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~------G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~-~~L~~lGl~~~~~~~~~ 75 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS------GLRVAVLEQRVPEPLAADAPPALRVSAINAASE-KLLTRLGVWQDILARRA 75 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC------CCEEEEEeCCCCcccccCCCCCceeeecchhHH-HHHHHcCCchhhhhhcC
Confidence 58999999999999999999999 99999999988643211 12334566554 445544432221111 1
Q ss_pred ccCCcEEEeccC--CccccCCCC--CCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCc
Q 006466 181 VSSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (644)
Q Consensus 181 ~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g 255 (644)
.....+.+.+.. ..+.+.... .....|.+.|..|.+.|.+.+.+. |++++++++|++++.++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~-- 151 (400)
T PRK08013 76 SCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKD-- 151 (400)
T ss_pred ccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcC--
Confidence 111223333221 112222111 111257899999999999999886 7999999999999887654 3 455554
Q ss_pred cccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccC
Q 006466 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (644)
Q Consensus 256 ~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~ 335 (644)
|.+++||+||+|||.+|.+|+++ ++... ....... .+. ..++......+.....+
T Consensus 152 -------------g~~i~a~lvVgADG~~S~vR~~~----~~~~~-~~~~~~~--~~~--~~v~~~~~~~~~~~~~~--- 206 (400)
T PRK08013 152 -------------GSMLTARLVVGADGANSWLRNKA----DIPLT-FWDYQHH--ALV--ATIRTEEPHDAVARQVF--- 206 (400)
T ss_pred -------------CCEEEeeEEEEeCCCCcHHHHHc----CCCcc-ccccCcE--EEE--EEEeccCCCCCEEEEEE---
Confidence 67899999999999999999976 54421 1111111 111 12222211222211111
Q ss_pred CCCCCcceEEEEEeCCCe-EEEEEEEccCCC-CCCCCcHHHHH-HhhcCCcchhcccCCceeeecceeeecCCcccCCcc
Q 006466 336 LDQKTYGGSFLYHMNDRQ-IALGLVVALNYH-NPFLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (644)
Q Consensus 336 ~~~~~~g~~~l~~~~~~~-~~ig~~~~~d~~-~~~~~~~~~~~-~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~ 412 (644)
... |..+++|..++. ..+.+....+.. .......+.|. .+... +...+...+.... ....+... ...++|
T Consensus 207 ~~~---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~-~~~~~l~~-~~~~~~ 279 (400)
T PRK08013 207 HGD---GILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIA--FDNRLGLCELESE-RQVFPLTG-RYARQF 279 (400)
T ss_pred cCC---CCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHH--HhHhhCceEecCC-ccEEecce-eecccc
Confidence 111 234567876543 445544322100 00001112222 11110 0011111111100 00011110 135689
Q ss_pred cCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC----C--chHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----D--SNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~----~--~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.. . ..|+.|+++++.. ....+...+.+..+|.
T Consensus 280 ~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 280 AAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHS-AALMLAGMQGFRDLFA 358 (400)
T ss_pred cCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999865421 1 2599999987764 6666677777777774
No 16
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=3.2e-27 Score=263.03 Aligned_cols=338 Identities=17% Similarity=0.156 Sum_probs=198.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
|++||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.++++ +++..++..+...........
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viEr~~~~~~-~~ra~~l~~~~~-e~l~~lGl~~~l~~~~~~~~~ 72 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA------GVKTCVIERLKETVP-YSKALTLHPRTL-EILDMRGLLERFLEKGRKLPS 72 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCC-CcceeEecHHHH-HHHHhcCcHHHHHhhcccccc
Confidence 358999999999999999999999 999999999986532 224556777765 444444322111100000111
Q ss_pred EEEeccCCccccCCC-CCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccc
Q 006466 186 FWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (644)
..+......+++... ......+.+++..+.+.|.+.+++.|++++++++++++..++++ + .|++.+ .+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~----~~g---- 142 (493)
T PRK08244 73 GHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-V-EVVVRG----PDG---- 142 (493)
T ss_pred eEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-E-EEEEEe----CCc----
Confidence 111111111222111 11122467899999999999999999999999999999887754 3 344432 112
Q ss_pred ccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceE
Q 006466 265 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 344 (644)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~ 344 (644)
..+++||+||+|||.+|.+++++ ++..+ ...... .++.....+.. .........+ .+. |..
T Consensus 143 ----~~~i~a~~vVgADG~~S~vR~~l----gi~~~-g~~~~~--~~~~~~~~~~~--~~~~~~~~~~----~~~--g~~ 203 (493)
T PRK08244 143 ----LRTLTSSYVVGADGAGSIVRKQA----GIAFP-GTDATF--TAMLGDVVLKD--PPPSSVLSLC----TRE--GGV 203 (493)
T ss_pred ----cEEEEeCEEEECCCCChHHHHhc----CCCcc-CCCcce--EEEEEEEEecC--CCCcceeEEE----eCC--ceE
Confidence 14799999999999999988865 54421 111111 11211112211 1122222222 111 446
Q ss_pred EEEEeCCCeEEEEEEEccCCC---CCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEEc
Q 006466 345 FLYHMNDRQIALGLVVALNYH---NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (644)
Q Consensus 345 ~l~~~~~~~~~ig~~~~~d~~---~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiG 421 (644)
+++|..++...+.+....... ....+..+..+.+.... ...+...... +..+ ++ ......++|..+|++|+|
T Consensus 204 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~-~~~~-~~-~~~~~a~~~~~gRv~L~G 278 (493)
T PRK08244 204 MIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRIC--GTDFGLNDPV-WMSR-FG-NATRQAERYRSGRIFLAG 278 (493)
T ss_pred EEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhh--CCCCCcCCee-EEEe-cc-cceeeHhhhccCcEEEee
Confidence 889998887776544322111 11122222223232110 0001100111 1000 00 011233578889999999
Q ss_pred cCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 422 DAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
||||.++|+.|||+|+||+||..||+.|+..+.. ...|+.|+++++.. ....+...+....++.
T Consensus 279 DAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~-~~~~~~~~~~~~~~~~ 345 (493)
T PRK08244 279 DAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPV-GTALLRNTEVQTKLFD 345 (493)
T ss_pred cceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHH-HHHHHHHhHHHHHHhc
Confidence 9999999999999999999999999999887643 46799999988863 5555555555555553
No 17
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.96 E-value=1.8e-27 Score=257.46 Aligned_cols=339 Identities=17% Similarity=0.148 Sum_probs=192.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCC--CCcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~--g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
.+||+||||||+||++|+.|++. |++|+|+||.+.. ... ..++.+.++++ +++..++..+..........
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~-~~a~~l~~~~~-~~l~~lGl~~~l~~~~~~~~ 73 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA------GIDSVVLERRSREYVEGR-IRAGVLEQGTV-DLLREAGVGERMDREGLVHD 73 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc------CCCEEEEEcCCccccccc-cceeEECHhHH-HHHHHcCChHHHHhcCCccC
Confidence 58999999999999999999999 9999999999752 111 22345677665 45554443221111111222
Q ss_pred cEEEeccCCc--cccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEE-cCCCcEEEEEeCcCccccCCC
Q 006466 185 KFWFLTKDRA--FSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILY-DADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 185 ~~~~~~~~~~--~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~-~~~g~v~gV~~~d~g~~~~G~ 261 (644)
.+.+...... ++++..........+++..+.+.|.+.+++.|++++++++++++.. ++++ ..|++.+ +|+
T Consensus 74 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~-----~G~ 146 (392)
T PRK08243 74 GIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEK-----DGE 146 (392)
T ss_pred cEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEc-----CCe
Confidence 2323222211 1222111112234567889999999998889999999999999876 3332 2455421 222
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEE-eecCCCCCCCcEEEEeccCCCCCC
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQKT 340 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~~h~~g~~~~~~~ 340 (644)
..+++||+||+|||.+|.+|+++ +.... ......+..++..+. ..+. ......+ . ....
T Consensus 147 -------~~~i~ad~vVgADG~~S~vR~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~---~~~~- 206 (392)
T PRK08243 147 -------EHRLDCDFIAGCDGFHGVSRASI----PAGAL-RTFERVYPFGWLGILAEAPP---VSDELIY-A---NHER- 206 (392)
T ss_pred -------EEEEEeCEEEECCCCCCchhhhc----Ccchh-hceecccCceEEEEeCCCCC---CCCceEE-e---eCCC-
Confidence 24799999999999999999976 22210 001111112221111 1111 1111111 1 1111
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhc-CC--cchhcccCCceeeecceeeecCCcccCCcccCCCe
Q 006466 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH-HP--AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (644)
Q Consensus 341 ~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~-~p--~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v 417 (644)
+..++++.+++...+.+............+.+..+.+.. .+ ....++. +..+... ..+.. ....++|..+|+
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~~~~~~grv 281 (392)
T PRK08243 207 -GFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVT-GPSIEKS--IAPLR-SFVAEPMQYGRL 281 (392)
T ss_pred -ceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCccccccccc-Ccccccc--ceeee-eceeccceeCCE
Confidence 223444444443333333322111111111222222211 11 0111111 1111100 01111 112356778999
Q ss_pred EEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~--~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
+|||||||.++|+.|||+|+||+||..||+.|.+.+.. ..+|+.|+++++.+ +.+.++.++.+..+++
T Consensus 282 vLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 282 FLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRR-VWKAERFSWWMTSMLH 351 (392)
T ss_pred EEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999886543 46899999999976 7788888887777765
No 18
>PRK06753 hypothetical protein; Provisional
Probab=99.96 E-value=3.8e-27 Score=253.39 Aligned_cols=331 Identities=17% Similarity=0.155 Sum_probs=203.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (644)
||+|||||||||++|+.|++. |++|+|+||.+.+.. ...|..+.+.++..| ..++..+...........+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~gi~l~~~~~~~L-~~~gl~~~~~~~~~~~~~~~~ 73 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ------GHEVKVFEKNESVKE-VGAGIGIGDNVIKKL-GNHDLAKGIKNAGQILSTMNL 73 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcccc-cccceeeChHHHHHH-HhcChHHHHHhcCCcccceeE
Confidence 799999999999999999999 999999999987653 234556677665333 233221110001111222333
Q ss_pred eccCCc-c-ccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 189 LTKDRA-F-SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 189 ~~~~~~-~-~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
.+.... + .++. ......+.++|..|.+.|.+.+.. ++|+++++|+++..+++ .+ .|++.+
T Consensus 74 ~~~~g~~~~~~~~-~~~~~~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v-~v~~~~------------- 135 (373)
T PRK06753 74 LDDKGTLLNKVKL-KSNTLNVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIENETD-KV-TIHFAD------------- 135 (373)
T ss_pred EcCCCCEEeeccc-ccCCccccccHHHHHHHHHHhCCC--ceEEECCEEEEEEecCC-cE-EEEECC-------------
Confidence 322111 1 1111 112235789999999999988753 68999999999987653 33 466655
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCccccee-EEEEEEeecCCC-CCCCcEEEEeccCCCCCCcceE
Q 006466 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGS 344 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~~g~~~h~~g~~~~~~~~g~~ 344 (644)
|.++.+|+||+|||.+|.+|+++. ... .....+. .+.. .++... .......++++ . -|..
T Consensus 136 --g~~~~~~~vigadG~~S~vR~~~~----~~~----~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~----~--~g~~ 197 (373)
T PRK06753 136 --GESEAFDLCIGADGIHSKVRQSVN----ADS----KVRYQGYTCFRG--LIDDIDLKLPDCAKEYWG----T--KGRF 197 (373)
T ss_pred --CCEEecCEEEECCCcchHHHHHhC----CCC----CceEcceEEEEE--EeccccccCccceEEEEc----C--CCEE
Confidence 677999999999999999999762 221 1111111 1111 112111 11122222221 1 1346
Q ss_pred EEEEeCCCeEEEEEEEccCCCCCCC---CcHHHHHHhhc-CCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEE
Q 006466 345 FLYHMNDRQIALGLVVALNYHNPFL---NPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAII 420 (644)
Q Consensus 345 ~l~~~~~~~~~ig~~~~~d~~~~~~---~~~~~~~~~~~-~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~Li 420 (644)
+++|..++.+.+.+....+...+.. ...+..+.++. .+.++.+++....... ...+......+++|..+|++||
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rv~Li 275 (373)
T PRK06753 198 GIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGI--LHHDIYDLKPLKSFVYGRIVLL 275 (373)
T ss_pred EEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccc--eeeccccccccccccCCCEEEE
Confidence 7888888877666554322111111 11222223332 3445555542211110 0011112234568889999999
Q ss_pred ccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHhHHHHHHHHHhcchhhhhc
Q 006466 421 GCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (644)
Q Consensus 421 GDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~~ 487 (644)
|||||.|+|+.|||+++||+||..|++.|... ...++|+.|++.++.+ +.+.++.++.+..++..
T Consensus 276 GDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~~ 340 (373)
T PRK06753 276 GDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-DFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQI 340 (373)
T ss_pred ecccccCCCCcCccHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHhc
Confidence 99999999999999999999999999998542 2257899999999976 88888999988887753
No 19
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.96 E-value=2.8e-27 Score=256.50 Aligned_cols=336 Identities=18% Similarity=0.182 Sum_probs=204.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
+..||+||||||+||++|+.|++. |++|+|+||.+.++. ...|..+.+.++ +++..++..+.........+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~------g~~v~v~Er~~~~~~-~g~gi~l~~~~~-~~l~~lg~~~~~~~~~~~~~~ 74 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ------GIKVKLLEQAAEIGE-IGAGIQLGPNAF-SALDALGVGEAARQRAVFTDH 74 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC------CCcEEEEeeCccccc-ccceeeeCchHH-HHHHHcCChHHHHhhccCCcc
Confidence 468999999999999999999999 999999999987653 223455666665 334444322111111111222
Q ss_pred EEEecc--CCc-cccCCC--C---CCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 186 FWFLTK--DRA-FSLPSP--F---SNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 186 ~~~~~~--~~~-~~~~~~--~---~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
+.+.+. ... ..++.. . .....+.+.|..|.+.|.+.+.+.+ ++++++++++++..++++ + .|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~--- 149 (396)
T PRK08163 75 LTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQ--- 149 (396)
T ss_pred eEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcC---
Confidence 333221 111 011111 0 1112357899999999999998775 999999999999876543 3 366554
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eEEEEEEeecC--CCCCCCcEEEEec
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDE--GKHNPGEILHTLG 333 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~--~~~~~g~~~h~~g 333 (644)
|.++.||+||+|||.+|.+++.+. +.. +...+ ..+........ .....+....+.+
T Consensus 150 ------------g~~~~ad~vV~AdG~~S~~r~~~~---g~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 208 (396)
T PRK08163 150 ------------GNRWTGDALIGCDGVKSVVRQSLV---GDA------PRVTGHVVYRAVIDVDDMPEDLRINAPVLWAG 208 (396)
T ss_pred ------------CCEEecCEEEECCCcChHHHhhcc---CCC------CCccccEEEEEEEeHHHCcchhccCccEEEEc
Confidence 567999999999999999988762 221 11111 11221222111 0001111111111
Q ss_pred cCCCCCCcceEEEEEeCCCe-EEEEEEEccCCC----CCCCCcHHHHHHhh-cCCcchhcccCCceeeecceeeecCCcc
Q 006466 334 WPLDQKTYGGSFLYHMNDRQ-IALGLVVALNYH----NPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQ 407 (644)
Q Consensus 334 ~~~~~~~~g~~~l~~~~~~~-~~ig~~~~~d~~----~~~~~~~~~~~~~~-~~p~i~~~l~~~~~i~~~~~~i~~gg~~ 407 (644)
. .+..+.||..++. +.+.+....+.. .......+..+.|. .+|.+..+++...... ...+ ....
T Consensus 209 ----~--~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~ 278 (396)
T PRK08163 209 ----P--HCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWK--RWAT--ADRE 278 (396)
T ss_pred ----C--CceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCcee--Eccc--cCCC
Confidence 1 1335677876654 333332222211 11122333444554 3566666665432221 0011 1122
Q ss_pred cCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC-CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 408 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 408 ~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~-~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
.+++|..+|++|+|||||.++|+.|||+++||+||..||++|.....+ ..+|+.|++.++.+ +.+.+..++.+..+++
T Consensus 279 ~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 279 PVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred cccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 456888899999999999999999999999999999999999753222 46899999999976 7777888888777765
No 20
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=2.8e-27 Score=257.01 Aligned_cols=336 Identities=18% Similarity=0.149 Sum_probs=196.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc-ccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
|||+||||||+||++|+.|++. ++|++|+||||.+..... ...|..+.++++ +++..++..+...........+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~----g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~-~~l~~lGl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA----APHLPVTVVDAAPAGAWSRDPRASAIAAAAR-RMLEALGVWDEIAPEAQPITDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC----CCCCEEEEEeCCCcccCCCCcceEEecHHHH-HHHHHCCChhhhhhhcCcccEE
Confidence 7999999999999999999998 223999999998764321 134666777665 3444433221111111111122
Q ss_pred EEeccCC-------ccccCCCC--CCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc
Q 006466 187 WFLTKDR-------AFSLPSPF--SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (644)
Q Consensus 187 ~~~~~~~-------~~~~~~~~--~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~ 257 (644)
.+.+... .+.+.... .....+.+++..|.+.|.+.+.+.|++++++++|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~---- 150 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-V-TVTLSD---- 150 (403)
T ss_pred EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-E-EEEECC----
Confidence 2222110 01111111 1112467899999999999999999999999999999876643 3 466654
Q ss_pred cCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eEEEEEEeecCCCCCCCcEEEEeccCC
Q 006466 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILHTLGWPL 336 (644)
Q Consensus 258 ~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~h~~g~~~ 336 (644)
|.++.+|+||+|||.+|.+++++ ++... ...++ .++.. .+.......+.....+.
T Consensus 151 -----------g~~~~ad~vI~AdG~~S~vr~~~----g~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--- 206 (403)
T PRK07333 151 -----------GSVLEARLLVAADGARSKLRELA----GIKTV----GWDYGQSGIVC--TVEHERPHGGRAEEHFL--- 206 (403)
T ss_pred -----------CCEEEeCEEEEcCCCChHHHHHc----CCCcc----cccCCCEEEEE--EEEcCCCCCCEEEEEeC---
Confidence 56799999999999999888754 54421 11111 12111 11111111122211111
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCCC--CCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccC
Q 006466 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPF--LNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~--~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~ 414 (644)
.. |..|++|..++...+.+....+..... .......+.+.. .+...+....... ....++. ....+++|+.
T Consensus 207 -~~--g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 279 (403)
T PRK07333 207 -PA--GPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQ--RFGHRLGELKVLG-KRRAFPL-GLTLARSFVA 279 (403)
T ss_pred -CC--CceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhcCceEecc-CccEeec-hhhhhhhccC
Confidence 11 346788998888776543221100000 011111111111 0001111000000 0001111 1224568899
Q ss_pred CCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhcccc------CCchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~------~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
+|++|+|||||.++|+.|||+++||+||..||+.|.+.+. ...+|+.||++++.. ....+..++.+..+|.
T Consensus 280 grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 356 (403)
T PRK07333 280 PRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFD-TVRMGVTTDVLNRLFS 356 (403)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987652 247899999877653 5555666666666664
No 21
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.96 E-value=5.4e-27 Score=253.10 Aligned_cols=334 Identities=16% Similarity=0.127 Sum_probs=203.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc----cccCccChHHHHHHhhhhhhcCCCee-eeccC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFEPRALNELLPQWKQEEAPIR-VPVSS 183 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~----~~g~~i~~~~l~~l~~~~~~~~~~~~-~~~~~ 183 (644)
||+||||||||+++|+.|++. |++|+|+||.+.++... ..+..+.+.++. .+..++..+.... .....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~------G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lGl~~~~~~~~~~~~ 73 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS------GLKIALIEATPAEAAATPGFDNRVSALSAASIR-LLEKLGVWDKIEPDRAQPI 73 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC------CCEEEEEeCCCccccCCCCCCcceeecCHHHHH-HHHHCCchhhhhhhcCCCc
Confidence 799999999999999999999 99999999998754321 123456666553 3333332211111 11122
Q ss_pred CcEEEeccCC--ccccCCC--CCCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 184 DKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 184 ~~~~~~~~~~--~~~~~~~--~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
..+.+..... .+.++.. ......+.++|..|.+.|.+.+.+.| ++++++++|+++..+++ .+ .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~----- 146 (385)
T TIGR01988 74 RDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDD----- 146 (385)
T ss_pred eEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECC-----
Confidence 2233333221 1222211 11223688999999999999999988 99999999999987664 33 466654
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~ 338 (644)
|.++.+|+||+|||.+|.+++++ +++.. . ......++......+. .........+. .
T Consensus 147 ----------g~~~~~~~vi~adG~~S~vr~~l----~~~~~-~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~ 203 (385)
T TIGR01988 147 ----------GQQLRARLLVGADGANSKVRQLA----GIPTT-G--WDYGQSAVVANVKHER--PHQGTAWERFT----P 203 (385)
T ss_pred ----------CCEEEeeEEEEeCCCCCHHHHHc----CCCcc-c--cccCCeEEEEEEEecC--CCCCEEEEEec----C
Confidence 56799999999999999988865 44321 1 1111122221122221 11222111111 1
Q ss_pred CCcceEEEEEeCCCeEEEEEEEccCC-C-CCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCC
Q 006466 339 KTYGGSFLYHMNDRQIALGLVVALNY-H-NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (644)
Q Consensus 339 ~~~g~~~l~~~~~~~~~ig~~~~~d~-~-~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~ 416 (644)
. |..+++|..++...+.+...... . .....+.+..+.+... +...+.... ........+. .....++|..+|
T Consensus 204 ~--g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 277 (385)
T TIGR01988 204 T--GPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRA--FGSRLGAIT-LVGERHAFPL-SLTHAKRYVAPR 277 (385)
T ss_pred C--CCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhcCceE-eccCcceeec-hhhhhhheecCc
Confidence 1 33678899888877776643211 0 0011222222222210 000110000 0000011111 112345788899
Q ss_pred eEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
++|+|||||+++|+.|+|+++||+||..||+.|.+.+.. ..+|+.|++.++.+ +.+.+..++.+..+|.
T Consensus 278 v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~~ 352 (385)
T TIGR01988 278 LALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLFS 352 (385)
T ss_pred eEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999876431 46899999999875 7778888888888774
No 22
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=3.6e-27 Score=256.36 Aligned_cols=336 Identities=11% Similarity=0.081 Sum_probs=196.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc-------ccccCccChHHHHHHhhhhhhcCCCee
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-------IISGNVFEPRALNELLPQWKQEEAPIR 178 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-------~~~g~~i~~~~l~~l~~~~~~~~~~~~ 178 (644)
|.+||+||||||+|+++|+.|++. |++|+|||+.+..... ...+..+.+.++ +++..++..+....
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~ 73 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS------GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQ-RILERLGAWDGIAA 73 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC------CCEEEEEcCCCccccccccCCCCCccchhhhHHHH-HHHHHCChhhhhhH
Confidence 358999999999999999999999 9999999998732110 112344556555 34444332211110
Q ss_pred e-eccCCcEEEeccCC--ccccCCC--CCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006466 179 V-PVSSDKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (644)
Q Consensus 179 ~-~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d 253 (644)
. ......+.+.+... .+.+... .....++.+.+..+.+.|.+.+++.|++++++++++++..++++ + .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~ 151 (405)
T PRK05714 74 RRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLAD 151 (405)
T ss_pred hhCccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECC
Confidence 0 01112223333221 1222211 11122578999999999999999889999999999999887654 3 466654
Q ss_pred CccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEec
Q 006466 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLG 333 (644)
Q Consensus 254 ~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g 333 (644)
|.+++||+||+|||.+|.+|+.+ ++... ..... ...+......+ ..........+
T Consensus 152 ---------------g~~~~a~~vVgAdG~~S~vR~~l----g~~~~--~~~~~-~~~~~~~~~~~--~~~~~~~~~~~- 206 (405)
T PRK05714 152 ---------------GRQLRAPLVVAADGANSAVRRLA----GCATR--EWDYL-HHAIVTSVRCS--EPHRATAWQRF- 206 (405)
T ss_pred ---------------CCEEEeCEEEEecCCCchhHHhc----CCCcc--cccCC-ceEEEEEEEcC--CCCCCEEEEEc-
Confidence 56799999999999999999865 44321 11111 11111111111 11111111111
Q ss_pred cCCCCCCcceEEEEEeCCC----eEEEEEEEccCCCCC--CCCcHHHHHHhhc--CCcchhcccCCceeeecceeeecCC
Q 006466 334 WPLDQKTYGGSFLYHMNDR----QIALGLVVALNYHNP--FLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGG 405 (644)
Q Consensus 334 ~~~~~~~~g~~~l~~~~~~----~~~ig~~~~~d~~~~--~~~~~~~~~~~~~--~p~i~~~l~~~~~i~~~~~~i~~gg 405 (644)
. +. |..+++|..++ ...+.+....+.... .....+..+.+.. .+.+.+++.......| + ..
T Consensus 207 --~-~~--g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~-l~ 275 (405)
T PRK05714 207 --T-DD--GPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCV-----P-LR 275 (405)
T ss_pred --C-CC--CCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEE-----e-cc
Confidence 1 11 33567777532 123333321110000 0111111111111 0111222221111111 1 11
Q ss_pred cccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHh
Q 006466 406 LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRAR 479 (644)
Q Consensus 406 ~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r 479 (644)
...+++|..+|++|+|||||.++|+.|||+|+||+||..||+.|...... ..+|+.||+.++.. +.+.+..++
T Consensus 276 ~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~ 354 (405)
T PRK05714 276 QRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAME 354 (405)
T ss_pred eeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 12457899999999999999999999999999999999999999764321 35799999999876 888888888
Q ss_pred cchhhhhc
Q 006466 480 NYRPAFEY 487 (644)
Q Consensus 480 ~~~~~~~~ 487 (644)
.+..+|+.
T Consensus 355 ~~~~~~~~ 362 (405)
T PRK05714 355 GFERLFQA 362 (405)
T ss_pred HHHHHHCC
Confidence 88887754
No 23
>PRK05868 hypothetical protein; Validated
Probab=99.96 E-value=6.8e-27 Score=250.79 Aligned_cols=333 Identities=15% Similarity=0.069 Sum_probs=189.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.||+||||||+|+++|+.|++. |++|+||||.+.+.. ...+..+.+.++ +++..++..+...........+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~------G~~v~viE~~~~~~~-~g~~i~~~~~a~-~~L~~lGl~~~~~~~~~~~~~~~ 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH------GYSVTMVERHPGLRP-GGQAIDVRGPAL-DVLERMGLLAAAQEHKTRIRGAS 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCC-CceeeeeCchHH-HHHHhcCCHHHHHhhccCccceE
Confidence 3899999999999999999999 999999999987643 112233444444 33333322111000111112222
Q ss_pred EeccCC-ccccC-----C-CCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 188 FLTKDR-AFSLP-----S-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 188 ~~~~~~-~~~~~-----~-~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
+.+.+. .+... . .......+.+.|..|.+.|.+.+ ..|++++++++|+++..+++ .| .|++.|
T Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~-~v-~v~~~d------- 143 (372)
T PRK05868 74 FVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGD-SV-RVTFER------- 143 (372)
T ss_pred EEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCC-eE-EEEECC-------
Confidence 222111 11000 0 01112246788999999886643 56899999999999987653 33 466665
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEE-EEeecCCCCCCCcEEEEeccCCCCC
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKE-VWEIDEGKHNPGEILHTLGWPLDQK 339 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~g~~~h~~g~~~~~~ 339 (644)
|.+++||+||+|||.+|.+|+.+ ++... ......|... ...++... ..+....+ .+..+
T Consensus 144 --------g~~~~adlvIgADG~~S~vR~~~---~~~~~-----~~~~~~g~~~~~~~~~~~~-~~~~~~~~---~~g~~ 203 (372)
T PRK05868 144 --------AAAREFDLVIGADGLHSNVRRLV---FGPEE-----QFVKRLGTHAAIFTVPNFL-ELDYWQTW---HYGDS 203 (372)
T ss_pred --------CCeEEeCEEEECCCCCchHHHHh---cCCcc-----cceeecceEEEEEEcCCCC-CCCcceEE---EecCC
Confidence 66899999999999999999987 23221 1111122221 22232211 11111111 11122
Q ss_pred CcceEEEEEeCCC-eEEEEEEEccC-CC-CCCC---CcHHHHHHhhc--C--CcchhcccCCceeeecceeeecCCcccC
Q 006466 340 TYGGSFLYHMNDR-QIALGLVVALN-YH-NPFL---NPYEEFQKFKH--H--PAIKPLLEGGTVVQYGARTLNEGGLQSI 409 (644)
Q Consensus 340 ~~g~~~l~~~~~~-~~~ig~~~~~d-~~-~~~~---~~~~~~~~~~~--~--p~i~~~l~~~~~i~~~~~~i~~gg~~~~ 409 (644)
.. ..+|+..++ .....+..... .. .... ...+..+.|.. . +.+.+.+....... .+......+
T Consensus 204 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~-----~~~~~~~~~ 276 (372)
T PRK05868 204 TM--AGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFY-----FDEMSQILM 276 (372)
T ss_pred cE--EEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCcee-----eccceEEec
Confidence 11 335665543 32322222111 00 0000 11112223321 1 22333332211111 111111245
Q ss_pred CcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC-CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 410 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 410 ~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~-~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
++|+.+|++|||||||++.|+.|||+++||+||..||++|.....+ +.+|+.||+.+|.. +.+..+..+.....|.
T Consensus 277 ~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~~~~~~~al~~ye~~~~~~-~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 277 DRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAAGDDYQLGFANYHAEFHGF-VERNQWLVSDNIPGGA 353 (372)
T ss_pred CCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhHH-HHHhhhhhhccCCccc
Confidence 7899999999999999999999999999999999999999764322 57899999998864 6666676777666663
No 24
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=6e-27 Score=255.52 Aligned_cols=340 Identities=14% Similarity=0.136 Sum_probs=194.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCccChHHHHHHhhhhhhcCCCeeeeccC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (644)
...+||+||||||||+++|+.|++. |++|+||||++...... ..+..+.+.++ +++..++..+.........
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~g~~~~l~~~~~-~~L~~lGl~~~l~~~~~~~ 88 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDS------GLRIALIEAQPAEAAAAKGQAYALSLLSA-RIFEGIGVWEKILPQIGKF 88 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcC------CCEEEEEecCCccccCCCCcEEEechHHH-HHHHHCChhhhhHhhcCCc
Confidence 3468999999999999999999999 99999999998754322 12345666655 3444433221111111111
Q ss_pred CcEEEeccCC--ccccCCC-C-CCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 184 DKFWFLTKDR--AFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 184 ~~~~~~~~~~--~~~~~~~-~-~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
..+.+.+... ...++.. . .....+.+.+..|.+.|.+.+.+. |+++++++++++++.++++ + .|++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~----- 161 (415)
T PRK07364 89 RQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEI----- 161 (415)
T ss_pred cEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEcc-----
Confidence 2222222111 1122211 1 111235555557889999888775 6999999999999877644 3 355543
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccc-eeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~h~~g~~~~ 337 (644)
+++ ..+++||+||+|||.+|.+|+.+ ++.. ....+ ...+.. .+...........+.+ |+
T Consensus 162 ~~~-------~~~i~adlvIgADG~~S~vR~~~----~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~-- 221 (415)
T PRK07364 162 EGK-------QQTLQSKLVVAADGARSPIRQAA----GIKT----KGWKYWQSCVTA--TVKHEAPHNDIAYERF-WP-- 221 (415)
T ss_pred CCc-------ceEEeeeEEEEeCCCCchhHHHh----CCCc----eeecCCCEEEEE--EEEccCCCCCEEEEEe-cC--
Confidence 111 24799999999999999998865 4432 11111 111211 2221111122222211 21
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEccCC-CC-CCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCC
Q 006466 338 QKTYGGSFLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFP 415 (644)
Q Consensus 338 ~~~~g~~~l~~~~~~~~~ig~~~~~d~-~~-~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~ 415 (644)
. |..+++|..++...+.+....+. .. ......+..+.+.. .+...+...+.+... ...+. .....++|..+
T Consensus 222 ~---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~ 294 (415)
T PRK07364 222 S---GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQ--RYGDQLGKLELLGDR-FLFPV-QLMQSDRYVQH 294 (415)
T ss_pred C---CCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhhcCceecCCC-ceecc-hhhhhhhhcCC
Confidence 1 33578898887766654432110 00 00111111122211 011111110111100 00111 11134678899
Q ss_pred CeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhcccc---C---CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~---~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
|++|||||||.++|+.|||+++||+||..||++|...+. + ..+|+.|++.++.. ....++.++.+..+|.
T Consensus 295 rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 370 (415)
T PRK07364 295 RLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGFTDLLDRLFS 370 (415)
T ss_pred cEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999986542 1 26899999987754 5556677776777664
No 25
>PRK06847 hypothetical protein; Provisional
Probab=99.96 E-value=1.3e-26 Score=249.36 Aligned_cols=333 Identities=19% Similarity=0.164 Sum_probs=193.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..||+||||||+||++|+.|++. |++|+|+||.+.+... ..|..+.+..+.. +..++..............+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~~-g~g~~l~~~~~~~-l~~~gl~~~~~~~~~~~~~~ 75 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA------GIAVDLVEIDPEWRVY-GAGITLQGNALRA-LRELGVLDECLEAGFGFDGV 75 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCccC-CceeeecHHHHHH-HHHcCCHHHHHHhCCCccce
Confidence 47999999999999999999999 9999999998865431 2344556655422 22221110000000111122
Q ss_pred EEeccCCc--cccCCC--C--CCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 187 WFLTKDRA--FSLPSP--F--SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 187 ~~~~~~~~--~~~~~~--~--~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
.+.+.... ..++.. . .......+.|..|.+.|.+.+++.|++++++++|+++..++++ + .|.+.+
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~------- 146 (375)
T PRK06847 76 DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-V-TVTFSD------- 146 (375)
T ss_pred EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-E-EEEEcC-------
Confidence 22221111 111111 0 0122456889999999999999999999999999999876643 3 466654
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~ 340 (644)
|.++.+|+||+|||.+|.+++++. +... .+...+..... ..++....... ...+.+ ++
T Consensus 147 --------g~~~~ad~vI~AdG~~s~~r~~l~---~~~~----~~~~~g~~~~~-~~~~~~~~~~~-~~~~~~----~~- 204 (375)
T PRK06847 147 --------GTTGRYDLVVGADGLYSKVRSLVF---PDEP----EPEYTGQGVWR-AVLPRPAEVDR-SLMYLG----PT- 204 (375)
T ss_pred --------CCEEEcCEEEECcCCCcchhhHhc---CCCC----CceeccceEEE-EEecCCCCccc-eEEEeC----CC-
Confidence 668999999999999999998762 2221 12222222111 01222111111 111111 11
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCCCcH---HHHHH-hhcC-C-cchhcc---cCCceeeecceeeecCCcccCCc
Q 006466 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPY---EEFQK-FKHH-P-AIKPLL---EGGTVVQYGARTLNEGGLQSIPY 411 (644)
Q Consensus 341 ~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~---~~~~~-~~~~-p-~i~~~l---~~~~~i~~~~~~i~~gg~~~~~~ 411 (644)
+...++|..++...+.+..... ..+..... +.++. +... + .+..+. .....+.+ .+.......++
T Consensus 205 -~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 278 (375)
T PRK06847 205 -TKAGVVPLSEDLMYLFVTEPRP-DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY----RPLETLLVPAP 278 (375)
T ss_pred -cEEEEEcCCCCeEEEEEeccCc-ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee----ccHhhccCCCC
Confidence 2234566666554433222211 11112221 11221 2222 2 222222 11111111 11111112346
Q ss_pred ccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHhHHHHHHHHHhcchhhh
Q 006466 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 412 ~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~ 485 (644)
|..+|++|||||||.++|+.|||+++||+||..||+.|.+.....++|+.|+++++.+ +...+..++.+...+
T Consensus 279 ~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 279 WHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWER-CRMVVEASARIGRIE 351 (375)
T ss_pred ccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhee
Confidence 8889999999999999999999999999999999999976432357899999999875 778888888777665
No 26
>PRK07588 hypothetical protein; Provisional
Probab=99.96 E-value=8.9e-27 Score=252.08 Aligned_cols=336 Identities=13% Similarity=0.054 Sum_probs=193.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.||+||||||+||++|+.|++. |++|+|+||.+..... ..+..+.+.++ +++..++..+...........+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~-g~~~~l~~~~~-~~l~~lGl~~~l~~~~~~~~~~~ 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY------GHEPTLIERAPELRTG-GYMVDFWGVGY-EVAKRMGITDQLREAGYQIEHVR 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCceEEEeCCCCccCC-CeEEeccCcHH-HHHHHcCCHHHHHhccCCccceE
Confidence 3799999999999999999999 9999999999765321 11223334433 23333221110000111112222
Q ss_pred EeccCCc--cccCC--CCCC--CCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 188 FLTKDRA--FSLPS--PFSN--RGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 188 ~~~~~~~--~~~~~--~~~~--~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
+.+.... ..++. .... ...+.++|..|.+.|.+.+. .|++|+++++|++++.++++ + .|++.+
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~-------- 141 (391)
T PRK07588 73 SVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFER-------- 141 (391)
T ss_pred EEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECC--------
Confidence 3221111 11111 0111 12467999999999988664 47999999999999887643 3 466655
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~ 341 (644)
|.++++|+||+|||.+|.+|+.+ ++... ......+..+. ...+............. |. .++
T Consensus 142 -------g~~~~~d~vIgADG~~S~vR~~~---~~~~~---~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--~~-~~g-- 202 (391)
T PRK07588 142 -------GTPRDFDLVIGADGLHSHVRRLV---FGPER---DFEHYLGCKVA-ACVVDGYRPRDERTYVL--YN-EVG-- 202 (391)
T ss_pred -------CCEEEeCEEEECCCCCccchhhc---cCCcc---ceEEEcCcEEE-EEEcCCCCCCCCceEEE--Ee-CCC--
Confidence 66789999999999999999864 22221 00111111111 11111111111111111 11 111
Q ss_pred ceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHH----HhhcC-Ccchhccc---CCceeeecceeeecCCcccCCccc
Q 006466 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ----KFKHH-PAIKPLLE---GGTVVQYGARTLNEGGLQSIPYPV 413 (644)
Q Consensus 342 g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~----~~~~~-p~i~~~l~---~~~~i~~~~~~i~~gg~~~~~~~~ 413 (644)
+...++|..++...+.+....+...+..+.....+ .+... +....+++ ....+.+ .......+++|.
T Consensus 203 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~w~ 277 (391)
T PRK07588 203 RQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYF-----DVVSQIRMDRWS 277 (391)
T ss_pred CEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchhe-----eeeeeeccCccc
Confidence 13456777666654444443222222222222222 22211 22222222 1111110 001112456888
Q ss_pred CCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC-CchHHHHHHHHHHhHHHHHHHHHhcchhhhhc
Q 006466 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (644)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~-~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~~ 487 (644)
.+|++|+|||||.++|+.|||+++||+||..||+.|...... ..+|+.|++.++.. +...+..++.+..+|..
T Consensus 278 ~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~~ 351 (391)
T PRK07588 278 RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFAP 351 (391)
T ss_pred cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHhhcccccccccC
Confidence 999999999999999999999999999999999999764322 46899999999975 77788888888777754
No 27
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.96 E-value=1.1e-26 Score=261.21 Aligned_cols=340 Identities=16% Similarity=0.129 Sum_probs=200.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
+.+||+||||||+||++|+.|++. |++|+||||.+.+.... .+..+.++.+ +++..++..+...........
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~------G~~v~v~Er~~~~~~~~-ra~~l~~~~~-~~L~~lGl~~~l~~~~~~~~~ 80 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY------GVRVLVLERWPTLYDLP-RAVGIDDEAL-RVLQAIGLADEVLPHTTPNHG 80 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCC-ceeeeCHHHH-HHHHHcCChhHHHhhcccCCc
Confidence 468999999999999999999999 99999999998764322 3456666655 344443322111111111222
Q ss_pred EEEeccCCc--cccCCC----CCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 186 FWFLTKDRA--FSLPSP----FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 186 ~~~~~~~~~--~~~~~~----~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
+.+.+.... ..++.. ......+.+.+..+.+.|.+.+.+. |++|+++++|++++.++++ | .|++.+ .
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~----~ 154 (538)
T PRK06183 81 MRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTD----A 154 (538)
T ss_pred eEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEc----C
Confidence 333321111 112210 0011235688999999999998875 8999999999999988765 3 355542 2
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~ 338 (644)
+|+ ..+++||+||+|||.+|.+|+.+ ++... .......++.+. + ...............+ .+
T Consensus 155 ~G~-------~~~i~ad~vVgADG~~S~vR~~l----g~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~----~~ 216 (538)
T PRK06183 155 DGQ-------RETVRARYVVGCDGANSFVRRTL----GVPFE-DLTFPERWLVVD-V-LIANDPLGGPHTYQYC----DP 216 (538)
T ss_pred CCC-------EEEEEEEEEEecCCCchhHHHHc----CCeee-CCCccceEEEEE-E-ecccCccCCCceEEEE----CC
Confidence 332 25799999999999999999976 44321 111111111111 0 1111111111111111 11
Q ss_pred CCcceEEEEEeCCCeEEEEEEEccCC-CCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCe
Q 006466 339 KTYGGSFLYHMNDRQIALGLVVALNY-HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (644)
Q Consensus 339 ~~~g~~~l~~~~~~~~~ig~~~~~d~-~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v 417 (644)
+ +...+++..++...+.+....+. ......+....+.+..... . ....+.+... .........++|..+|+
T Consensus 217 ~--~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~~~---~~~~~~~~a~~~~~gRv 288 (538)
T PRK06183 217 A--RPYTSVRLPHGRRRWEFMLLPGETEEQLASPENVWRLLAPWGP-T--PDDAELIRHA---VYTFHARVADRWRSGRV 288 (538)
T ss_pred C--CCEEEEEcCCCeEEEEEEeCCCCChhhcCCHHHHHHHHHhhCC-C--CcceEEEEEE---eeeEccEEhhhhccCCE
Confidence 1 22456677666655544432211 1111122222222222110 0 0000111110 11111123467889999
Q ss_pred EEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
+|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|+++++.. +.+.+..++.+..++.
T Consensus 289 ~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~~ 359 (538)
T PRK06183 289 LLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVIC 359 (538)
T ss_pred EEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999865543 46899999999975 8888888888777764
No 28
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-26 Score=251.42 Aligned_cols=340 Identities=16% Similarity=0.197 Sum_probs=200.8
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCee-eeccC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIR-VPVSS 183 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~-~~~~~ 183 (644)
.+++||+||||||+|+++|+.|++. |++|+|||+.+.... ...+..+.+.++ +++..++..+.... .....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~------G~~v~liE~~~~~~~-~~r~~~l~~~s~-~~L~~lG~~~~~~~~~~~~~ 75 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA------GVDVTVLEKHADFLR-DFRGDTVHPSTL-ELMDELGLLERFLELPHQKV 75 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-cccCceeChhHH-HHHHHcCChhHHhhccccee
Confidence 4579999999999999999999999 999999999865432 123455666544 33333222110000 00011
Q ss_pred CcEEEeccCCc---cccCCC-CCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 184 DKFWFLTKDRA---FSLPSP-FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 184 ~~~~~~~~~~~---~~~~~~-~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
..+.+...... .++... ......+.+.+..+.+.|.+.+.+. |++++++++|+++..++ +.+.+|.+.. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~----~ 150 (407)
T PRK06185 76 RTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRART----P 150 (407)
T ss_pred eeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEc----C
Confidence 12222221111 111111 1112256789999999999988775 89999999999998776 4565666542 1
Q ss_pred CCCcccccccc-eEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006466 259 DGSKKENFQRG-VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (644)
Q Consensus 259 ~G~~~~~~~~g-~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~ 337 (644)
+ | .+++||+||+|||.+|.+++++ ++..+.....+. + ....++.....++.....+ .
T Consensus 151 ~---------g~~~i~a~~vI~AdG~~S~vr~~~----gi~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~----~ 208 (407)
T PRK06185 151 D---------GPGEIRADLVVGADGRHSRVRALA----GLEVREFGAPMD----V-LWFRLPREPDDPESLMGRF----G 208 (407)
T ss_pred C---------CcEEEEeCEEEECCCCchHHHHHc----CCCccccCCCce----e-EEEecCCCCCCCcccceEe----c
Confidence 1 3 4799999999999999988754 554311111111 1 1112222111111111111 1
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEccCCCCCC-CCcHHHHH-Hhh-cCCcchhcccCCceeeecceeeecCCcccCCcccC
Q 006466 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPF-LNPYEEFQ-KFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (644)
Q Consensus 338 ~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~-~~~~~~~~-~~~-~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~ 414 (644)
++ |..+++|.. +...+++....+..... ....+.|. .+. ..|.+.+.+...+... ....++. .....++|..
T Consensus 209 ~~--g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l-~~~~~~~~~~ 283 (407)
T PRK06185 209 PG--QGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDV-RVDRLRRWHR 283 (407)
T ss_pred CC--cEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEE-eccccccccC
Confidence 11 335677776 67777776644321110 11122222 222 2455544443211111 0011111 1223467888
Q ss_pred CCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHHhHHHHHHHHHhcchhhh
Q 006466 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~----~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~ 485 (644)
+|++|+|||||.++|..|||+|+||+||..||+.|.+.+.. ...|+.|++.++.. ....+...+.+.++|
T Consensus 284 ~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 284 PGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFP-TRVTQALQRRIQRRL 357 (407)
T ss_pred CCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999876533 26799999998865 665666666665555
No 29
>PRK09126 hypothetical protein; Provisional
Probab=99.96 E-value=7.6e-27 Score=252.76 Aligned_cols=338 Identities=17% Similarity=0.138 Sum_probs=199.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC--cccccC--ccChHHHHHHhhhhhhcCCCeeee-
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA--HIISGN--VFEPRALNELLPQWKQEEAPIRVP- 180 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~--~~~~g~--~i~~~~l~~l~~~~~~~~~~~~~~- 180 (644)
|++||+||||||+|+++|+.|++. |++|+|+||.+.... ....|. .+.+.++ +++..++..+......
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~-~~L~~lGl~~~~~~~~~ 74 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS------GLKVTLIERQPLAALADPAFDGREIALTHASR-EILQRLGAWDRIPEDEI 74 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEEeCCCcccccCCCCchhHHHhhHHHH-HHHHHCCChhhhccccC
Confidence 479999999999999999999999 999999999986431 112232 3445444 4455544322111111
Q ss_pred ccCCcEEEeccCC--ccccCCCC--CCCCcEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCc
Q 006466 181 VSSDKFWFLTKDR--AFSLPSPF--SNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (644)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g 255 (644)
.....+.+.+... .+.++... ....++.+++..+.+.|.+.+.+ .|++|+++++|++++.++++ + .|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~-~v~~~~-- 150 (392)
T PRK09126 75 SPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-A-QVTLAN-- 150 (392)
T ss_pred CccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-E-EEEEcC--
Confidence 1112222222211 12222111 11235778999999999988754 68999999999999876643 3 466654
Q ss_pred cccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccC
Q 006466 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (644)
Q Consensus 256 ~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~ 335 (644)
|.+++||+||+|||.+|.+++.+ ++.............+ .+.......+...++++
T Consensus 151 -------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-- 206 (392)
T PRK09126 151 -------------GRRLTARLLVAADSRFSATRRQL----GIGADMHDFGRTMLVC-----RMRHELPHHHTAWEWFG-- 206 (392)
T ss_pred -------------CCEEEeCEEEEeCCCCchhhHhc----CCCccccccCCeEEEE-----EEeccCCCCCEEEEEec--
Confidence 56899999999999999998865 4432111111111111 12111111222233332
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCccc
Q 006466 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (644)
Q Consensus 336 ~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~ 413 (644)
.+ +..++||..++...+++....+.... ...+.+..+.+.. .+...+........ ....+.. ....++|.
T Consensus 207 --~~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 278 (392)
T PRK09126 207 --YG--QTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTA--RFKGRLGAMRLVSS-RHAYPLV-AVYAHRFV 278 (392)
T ss_pred --CC--CCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhccCeEEcCC-CcEeech-HHHHHHHh
Confidence 11 23578899888777776543211000 0111111111110 01111111010000 0001111 11236788
Q ss_pred CCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhcccc---C---CchHHHHHHHHHHhHHHHHHHHHhcchhhhhc
Q 006466 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (644)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~---~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~~ 487 (644)
.+|++|+|||||.++|+.|||+++||+||..||++|...+. + .+.|+.|+++++.. +.+.+..++.+..+|..
T Consensus 279 ~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~~ 357 (392)
T PRK09126 279 AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLA-TRPLYHATNAIAALYTD 357 (392)
T ss_pred hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999987652 1 35799999999875 77777788877777743
No 30
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.96 E-value=8.7e-27 Score=252.28 Aligned_cols=336 Identities=15% Similarity=0.099 Sum_probs=193.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc----ccCccChHHHHHHhhhhhhcCCCee-ee
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII----SGNVFEPRALNELLPQWKQEEAPIR-VP 180 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~----~g~~i~~~~l~~l~~~~~~~~~~~~-~~ 180 (644)
+.+||+||||||+|+++|+.|++. |++|+||||.+....... ....+.+.++ +++..++....... ..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~------G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~lGl~~~~~~~~~ 77 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA------GLSVALVEGREPPRWQADQPDLRVYAFAADNA-ALLDRLGVWPAVRAARA 77 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC------CCEEEEEeCCCCcccccCCCCCEEEEecHHHH-HHHHHCCchhhhhHhhC
Confidence 468999999999999999999999 999999999875432111 1123555554 33443332111110 01
Q ss_pred ccCCcEEEecc--CCccccCCC--CCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 181 VSSDKFWFLTK--DRAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 181 ~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
.....+.+... ...+.++.. ....-.|.+++..|.+.|.+.+++.|++++++++|+++..++++ + .|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~--- 152 (392)
T PRK08773 78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDD--- 152 (392)
T ss_pred CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECC---
Confidence 11112222221 112222211 11223688999999999999999999999999999999877643 3 466654
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~ 336 (644)
|.++++|+||+|||.+|.+++.+ ++..+ .. .....++... +.......+.....+.
T Consensus 153 ------------g~~~~a~~vV~AdG~~S~vr~~~----g~~~~-~~--~~~~~~~~~~--v~~~~~~~~~~~~~~~--- 208 (392)
T PRK08773 153 ------------GRRLEAALAIAADGAASTLRELA----GLPVS-RH--DYAQRGVVAF--VDTEHPHQATAWQRFL--- 208 (392)
T ss_pred ------------CCEEEeCEEEEecCCCchHHHhh----cCCce-EE--EeccEEEEEE--EEccCCCCCEEEEEeC---
Confidence 56799999999999999888754 44421 00 0111232222 2211111222221121
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccC
Q 006466 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~ 414 (644)
.. |...++|..++...+.+....+.... ..+..+..+.+.. .+...+..-+..... ...+. .....++|..
T Consensus 209 ~~---g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~l-~~~~~~~~~~ 281 (392)
T PRK08773 209 PT---GPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQ--AFAARLGEVRVASPR-TAFPL-RRQLVQQYVS 281 (392)
T ss_pred CC---CcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhcCeEecCCc-cEeec-hhhhhhhhcC
Confidence 11 33567888877766665542210000 0111111111110 011111100000000 00111 1123468899
Q ss_pred CCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHhcchhhh
Q 006466 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~ 485 (644)
+|++|+|||||.++|+.|||+|+||+||..||+.|.+.+.. ...|++|++.++.. ....+.....+.++|
T Consensus 282 ~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~-~~~~~~~~~~l~~~f 357 (392)
T PRK08773 282 GRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSD-NTVAAYGFDAINRVF 357 (392)
T ss_pred CcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876532 26799999998864 333334334455555
No 31
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.96 E-value=1.5e-26 Score=260.68 Aligned_cols=339 Identities=17% Similarity=0.163 Sum_probs=192.8
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
.+.+||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.++++ +++..++..+..........
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viE~~~~~~~~-~ra~~l~~~~~-~~l~~lGl~~~l~~~~~~~~ 92 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ------GVPVVLLDDDDTLSTG-SRAICFAKRSL-EIFDRLGCGERMVDKGVSWN 92 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEeCCCCCCCC-CeEEEEcHHHH-HHHHHcCCcHHHHhhCceee
Confidence 3578999999999999999999999 9999999999865432 23456677665 44444443211111000000
Q ss_pred c-EEEeccCCccccCC--CC-CCC-CcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 185 K-FWFLTKDRAFSLPS--PF-SNR-GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 185 ~-~~~~~~~~~~~~~~--~~-~~~-~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
. ..+........++. .. ... ..+.+.+..+.+.|.+.+.+. |++++++++++++..++++.. +.+.+ .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~--v~~~~----~ 166 (547)
T PRK08132 93 VGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT--LTVET----P 166 (547)
T ss_pred ceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE--EEEEC----C
Confidence 0 01111111111111 00 111 134478999999999999876 699999999999988775432 33322 1
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~ 338 (644)
+| ..++++|+||+|||.+|.+|+.+ ++... ........+-. ....... .+.....+++.+..+
T Consensus 167 ~g--------~~~i~ad~vVgADG~~S~vR~~l----g~~~~-g~~~~~~~~~~--d~~~~~~--~~~~~~~~~~~~~~~ 229 (547)
T PRK08132 167 DG--------PYTLEADWVIACDGARSPLREML----GLEFE-GRTFEDRFLIA--DVKMKAD--FPTERWFWFDPPFHP 229 (547)
T ss_pred CC--------cEEEEeCEEEECCCCCcHHHHHc----CCCCC-CccccceEEEE--EEEecCC--CCCeeeEEEeccCCC
Confidence 11 14699999999999999988865 55421 11110111100 0111111 122222233222222
Q ss_pred CCcceEEEEEeCCCeEEEEEEEccCCC-CCCCCcHHHHHHhhcCCcchhcccCCc--eeeecceeeecCCcccCCcccCC
Q 006466 339 KTYGGSFLYHMNDRQIALGLVVALNYH-NPFLNPYEEFQKFKHHPAIKPLLEGGT--VVQYGARTLNEGGLQSIPYPVFP 415 (644)
Q Consensus 339 ~~~g~~~l~~~~~~~~~ig~~~~~d~~-~~~~~~~~~~~~~~~~p~i~~~l~~~~--~i~~~~~~i~~gg~~~~~~~~~~ 415 (644)
+ ...++++..++...+.+....+.. .....+.+..+ .+++++.... .+.+.. +........++|..+
T Consensus 230 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~g 299 (547)
T PRK08132 230 G--QSVLLHRQPDNVWRIDFQLGWDADPEAEKKPENVIP------RVRALLGEDVPFELEWVS--VYTFQCRRMDRFRHG 299 (547)
T ss_pred C--cEEEEEeCCCCeEEEEEecCCCCCchhhcCHHHHHH------HHHHHcCCCCCeeEEEEE--eeeeeeeeecccccc
Confidence 2 124455555555554433221110 00111111111 2223332111 111110 101112245678899
Q ss_pred CeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhh
Q 006466 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~ 485 (644)
||+|+|||||.++|+.|||+|+||+||..||+.|+..+.. ...|+.||++++.. ..+.+..++....++
T Consensus 300 RV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~~ 371 (547)
T PRK08132 300 RVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFA-ADENIRNSTRSTDFI 371 (547)
T ss_pred cEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999876654 46899999999974 555566555555544
No 32
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.96 E-value=1.2e-26 Score=250.70 Aligned_cols=342 Identities=16% Similarity=0.122 Sum_probs=185.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC-cccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA-HIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~-~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
|.+||+||||||+|+++|+.|++. |++|+||||.+.... ....++.+.++++ +++..++..+..........
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~a~~l~~~~~-~~L~~lGl~~~l~~~~~~~~ 73 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQSRDYVLGRIRAGVLEQGTV-DLLREAGVDERMDREGLVHE 73 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC------CCCEEEEECCCCcccCCceeEeeECHHHH-HHHHHCCChHHHHhcCceec
Confidence 358999999999999999999999 999999999985211 1122344666654 33433332111100011112
Q ss_pred cEEEeccCCc--cccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeC-cCccccCCC
Q 006466 185 KFWFLTKDRA--FSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN-DMGIAKDGS 261 (644)
Q Consensus 185 ~~~~~~~~~~--~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~-d~g~~~~G~ 261 (644)
.+.+...... ++++............+..+.+.|.+.+.+.|++++++.+++.+...++..+ .|++. + |+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~------g~ 146 (390)
T TIGR02360 74 GTEIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERD------GE 146 (390)
T ss_pred ceEEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEEC------Ce
Confidence 2222222111 1222111111122345788899999999888999999998888765332222 46553 3 21
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~ 341 (644)
..+++||+||+|||.+|.+|+++ +... .......+..++..+. +......... .+.+. ..
T Consensus 147 -------~~~i~adlvIGADG~~S~VR~~l----~~~~-~~~~~~~~~~~~~~l~--~~~~~~~~~~-~~~~~---~~-- 206 (390)
T TIGR02360 147 -------RHRLDCDFIAGCDGFHGVSRASI----PAEV-LKEFERVYPFGWLGIL--SETPPVSHEL-IYSNH---ER-- 206 (390)
T ss_pred -------EEEEEeCEEEECCCCchhhHHhc----Cccc-ceeeeccCCcceEEEe--cCCCCCCCce-EEEeC---CC--
Confidence 13799999999999999999975 2211 0000111112222111 1111111111 11111 11
Q ss_pred ceEEEEEeCC-CeEEEEEEEccCCCCCCCCcHHHHHHhhc--CCcchhcccCCceeeecceeeecCCcccCCcccCCCeE
Q 006466 342 GGSFLYHMND-RQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 418 (644)
Q Consensus 342 g~~~l~~~~~-~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~ 418 (644)
+..+++..+ +...+-+....+...+........+.++. .+.+.+.+..+..... ...+... ...++|..+|++
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~grvv 282 (390)
T TIGR02360 207 -GFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEK--SIAPLRS-FVCEPMQYGRLF 282 (390)
T ss_pred -ceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccce--eeeeHHh-hccccCccCCEE
Confidence 112333322 11111111111100011111111111211 1222222221211110 0111111 123568889999
Q ss_pred EEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~--~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
|||||||.++|+.|||+|+||+||..||+.|.+.... ..+|+.|++.++.+ +.+..+.++.+..+++
T Consensus 283 LvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 283 LAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALAR-VWKAERFSWWMTSLLH 351 (390)
T ss_pred EEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999875432 46899999998876 7788888888777764
No 33
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.95 E-value=1.7e-26 Score=249.05 Aligned_cols=331 Identities=18% Similarity=0.203 Sum_probs=195.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC-CeEEEEcCCCCCCCcc---cccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
||+||||||+|+++|+.|++. | ++|+|+||.+...... ..+..+.+.++ +++..++..+..........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~------G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~-~~l~~lgl~~~~~~~~~~~~ 73 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL------GKIKIALIEANSPSAAQPGFDARSLALSYGSK-QILEKLGLWPKLAPFATPIL 73 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC------CCceEEEEeCCCccccCCCCCCeeEeccHHHH-HHHHHCCChhhhHhhcCccc
Confidence 799999999999999999999 9 9999999997654321 12355666654 34444332211111111111
Q ss_pred cEEEeccC--CccccCC--CCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccC
Q 006466 185 KFWFLTKD--RAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (644)
Q Consensus 185 ~~~~~~~~--~~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~ 259 (644)
.+.+.... ....+.. .......|.++|..|.+.|.+.+.+. |++++++++|+++..++++ + .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~------ 145 (382)
T TIGR01984 74 DIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDN------ 145 (382)
T ss_pred eEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECC------
Confidence 22222211 1111111 01112358899999999999999884 9999999999999877644 3 466554
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccc-eeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006466 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~ 338 (644)
|.++.||+||+|||.+|.+++++ ++... . ..+ ...+........ .........++ .
T Consensus 146 ---------g~~~~ad~vV~AdG~~S~vr~~l----~~~~~-~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~ 202 (382)
T TIGR01984 146 ---------GQQLRAKLLIAADGANSKVRELL----SIPTE-E---HDYNQTALIANIRHEQ--PHQGCAFERFT----P 202 (382)
T ss_pred ---------CCEEEeeEEEEecCCChHHHHHc----CCCCc-c---cccCCEEEEEEEEecC--CCCCEEEEeeC----C
Confidence 56799999999999999888764 44421 1 122 122221112211 11122222221 1
Q ss_pred CCcceEEEEEeCCC-eEEEEEEEccCCCC--CCCCcHHHHHHhhcC--CcchhcccCCceeeecceeeecCCcccCCccc
Q 006466 339 KTYGGSFLYHMNDR-QIALGLVVALNYHN--PFLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (644)
Q Consensus 339 ~~~g~~~l~~~~~~-~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~--p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~ 413 (644)
. |..+++|..++ ...+.+....+... ......+..+.+... +.+..+..-.....| +.. ....++|.
T Consensus 203 ~--g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~ 274 (382)
T TIGR01984 203 H--GPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTY-----PLK-LRIAETHV 274 (382)
T ss_pred C--CCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEe-----ecc-hhhhhhee
Confidence 1 22567787776 55554433211100 011111112222111 111111110111111 111 12346788
Q ss_pred CCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
.+|++|+|||||.++|+.|||+++||+||..||++|.....+ ..+|+.|+++++.. ....+..++.+..+|.
T Consensus 275 ~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 275 HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFD-QFITIGLTDGLNRLFS 349 (382)
T ss_pred cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999876522 36799999999865 6666677777777774
No 34
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.95 E-value=2.2e-26 Score=252.21 Aligned_cols=341 Identities=16% Similarity=0.128 Sum_probs=198.6
Q ss_pred ccEEEECCCHHHHHHHHHHHh----hchhcCCCCeEEEEcCCCCCCCc-----------ccccCccChHHHHHHhhhhhh
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQ----LCREKNVDLSVCVVEKGAEVGAH-----------IISGNVFEPRALNELLPQWKQ 172 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~----~~~~~~~G~~V~viEk~~~~g~~-----------~~~g~~i~~~~l~~l~~~~~~ 172 (644)
|||+||||||+|+++|+.|++ . |++|+||||.+..... ...+..+.++++ +++..++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~------G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~-~~L~~lG~ 73 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK------DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASI-SFFKKIGA 73 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC------CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHH-HHHHHcCc
Confidence 699999999999999999998 7 9999999995432211 012345566655 33333332
Q ss_pred cCCCeee-eccCCcEEEeccCC--ccccCCCC-CCCCcEEEcHHHHHHHHHHHHHhcC---CEEecCceEEEEEEc----
Q 006466 173 EEAPIRV-PVSSDKFWFLTKDR--AFSLPSPF-SNRGNYVISLSQLVRWLGGKAEELG---VEIYPGFAASEILYD---- 241 (644)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~v~r~~l~~~L~~~a~~~G---v~i~~g~~v~~v~~~---- 241 (644)
.+..... ......+.+.+... .+.++... .....+.+++..|.+.|.+.+++.+ ++++++++|+++..+
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~ 153 (437)
T TIGR01989 74 WDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYP 153 (437)
T ss_pred hhhhhhhcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccc
Confidence 1111110 01111223332211 12222211 1122678999999999999998875 999999999999753
Q ss_pred -CCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecC
Q 006466 242 -ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 242 -~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (644)
+++..+.|++.+ |.+++||+||+|||.+|.+|+.+ ++... ....... ++...+....
T Consensus 154 ~~~~~~v~v~~~~---------------g~~i~a~llVgADG~~S~vR~~~----gi~~~-g~~y~q~--~~v~~v~~~~ 211 (437)
T TIGR01989 154 NDNSNWVHITLSD---------------GQVLYTKLLIGADGSNSNVRKAA----NIDTT-GWNYNQH--AVVATLKLEE 211 (437)
T ss_pred cCCCCceEEEEcC---------------CCEEEeeEEEEecCCCChhHHHc----CCCcc-ceeeccE--EEEEEEEccc
Confidence 222233566654 67899999999999999999965 55531 1111111 1111112211
Q ss_pred CCCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCCcHHHHHHhhc--------CCc-------
Q 006466 321 GKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKH--------HPA------- 383 (644)
Q Consensus 321 ~~~~~g~~~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~--------~p~------- 383 (644)
. ...+.....+ ... |...++|..++...+.+......... .+++.+..+.+.. .|.
T Consensus 212 ~-~~~~~~~~~f---~~~---g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~ 284 (437)
T TIGR01989 212 A-TENDVAWQRF---LPT---GPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYA 284 (437)
T ss_pred C-CCCCeEEEEE---CCC---CCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccc
Confidence 1 1122222222 122 22456788887776655542211000 1122111111100 010
Q ss_pred chhcccC------Cc-----------eeeecc-eeeecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHH
Q 006466 384 IKPLLEG------GT-----------VVQYGA-RTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLA 445 (644)
Q Consensus 384 i~~~l~~------~~-----------~i~~~~-~~i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~l 445 (644)
++++++. ++ .+.... ..++. .....++|..+|++|+|||||.++|..|||+|+||+||..|
T Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~L 363 (437)
T TIGR01989 285 MEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASL 363 (437)
T ss_pred cccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHH
Confidence 0000000 00 000000 11111 22244678899999999999999999999999999999999
Q ss_pred HHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 446 AEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 446 A~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
|+.|.+.+.. ...|+.|+++++.. ....+...+.+..+|.
T Consensus 364 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~v~~~t~~l~~l~~ 409 (437)
T TIGR01989 364 VKALAEAVSVGADIGSISSLKPYERERYAK-NVVLLGLVDKLHKLYA 409 (437)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999876533 25799999999875 7777788888877775
No 35
>PRK06184 hypothetical protein; Provisional
Probab=99.95 E-value=5.1e-26 Score=253.83 Aligned_cols=337 Identities=17% Similarity=0.120 Sum_probs=191.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
++||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.++++ +++..++..+...........+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~------Gi~v~viE~~~~~~~~-~ra~~l~~~~~-e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR------GVSFRLIEKAPEPFPG-SRGKGIQPRTQ-EVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCcC-ccceeecHHHH-HHHHHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 9999999999876432 24566777766 4444443321111100000111
Q ss_pred EEeccCCc---cccC-----CCC-CCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc
Q 006466 187 WFLTKDRA---FSLP-----SPF-SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (644)
Q Consensus 187 ~~~~~~~~---~~~~-----~~~-~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~ 257 (644)
.+...... ..+. ... .....+.+++..+.+.|.+.+.+.|++|+++++++++..++++ | .|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~---- 148 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAG---- 148 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEe----
Confidence 11110000 0010 000 1122467889999999999999999999999999999887755 3 233321
Q ss_pred cCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006466 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (644)
Q Consensus 258 ~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~ 337 (644)
. +++.+++||+||+|||.+|.+|+++ ++........+...+ .....++. ... ...+.+ ...
T Consensus 149 ~--------~~~~~i~a~~vVgADG~~S~vR~~l----gi~~~g~~~~~~~~~--~~~~~~~~--~~~-~~~~~~--~~~ 209 (502)
T PRK06184 149 P--------AGEETVRARYLVGADGGRSFVRKAL----GIGFPGETLGIDRML--VADVSLTG--LDR-DAWHQW--PDG 209 (502)
T ss_pred C--------CCeEEEEeCEEEECCCCchHHHHhC----CCCcccCcCCCceEE--EEEEEeec--CCC-cceEEc--cCC
Confidence 0 0146899999999999999988865 544311111110111 11111111 111 112211 111
Q ss_pred CCCcceEEEEEeCCC-eEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCC
Q 006466 338 QKTYGGSFLYHMNDR-QIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (644)
Q Consensus 338 ~~~~g~~~l~~~~~~-~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~ 416 (644)
. .+...++|..++ ...+.+....+ ..+...+.+..+.+........ +. -+.+.+.. .........++|..+|
T Consensus 210 ~--~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~--~~~~~~~~a~~~~~gR 282 (502)
T PRK06184 210 D--MGMIALCPLPGTDLFQIQAPLPPG-GEPDLSADGLTALLAERTGRTD-IR-LHSVTWAS--AFRMNARLADRYRVGR 282 (502)
T ss_pred C--CcEEEEEEccCCCeEEEEEEcCCC-ccCCCCHHHHHHHHHHhcCCCC-cc-eeeeeeee--ccccceeEhhhhcCCc
Confidence 1 122345666543 33333322211 1112233222222222110000 00 00111100 0001111235788899
Q ss_pred eEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHHhHHHHHHHHHhcchhh
Q 006466 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPA 484 (644)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~--~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~ 484 (644)
++|+|||||.++|+.|||+|+||+||..||+.|+..+.. +..|+.|+++++.. ..+.+..++.+...
T Consensus 283 v~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~ 351 (502)
T PRK06184 283 VFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPV-AAAVLGLSTELLDA 351 (502)
T ss_pred EEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876554 45799999999974 55555555554433
No 36
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.95 E-value=8.1e-26 Score=256.70 Aligned_cols=350 Identities=15% Similarity=0.165 Sum_probs=200.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHh-hchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQ-LCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~-~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
.++||+||||||+||++|+.|++ . |++|+||||.+.... ...+..+.++++ +++..++..+..........
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~------Gi~v~IiE~~~~~~~-~grA~gl~prtl-eiL~~lGl~d~l~~~g~~~~ 102 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFP------DITTRIVERKPGRLE-LGQADGIACRTM-EMFQAFGFAERILKEAYWIN 102 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCC------CCcEEEEEcCCCCCC-CCeeeEEChHHH-HHHHhccchHHHHhhccccc
Confidence 46899999999999999999999 7 999999999875422 123456778776 55555443222111111111
Q ss_pred cEEEeccCC----c-------cccCCCCCCCCcEEEcHHHHHHHHHHHHHhcC--CEEecCceEEEEEEcCCC-cEEEEE
Q 006466 185 KFWFLTKDR----A-------FSLPSPFSNRGNYVISLSQLVRWLGGKAEELG--VEIYPGFAASEILYDADN-KVIGIG 250 (644)
Q Consensus 185 ~~~~~~~~~----~-------~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G--v~i~~g~~v~~v~~~~~g-~v~gV~ 250 (644)
.+.+..... . ...+..........+++..+.+.|.+.+.+.| +++.++++++++..++++ ..+.|+
T Consensus 103 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~ 182 (634)
T PRK08294 103 ETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVT 182 (634)
T ss_pred ceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEE
Confidence 122221100 0 01111111222457899999999999998876 578999999999876532 222455
Q ss_pred eCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEE
Q 006466 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILH 330 (644)
Q Consensus 251 ~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h 330 (644)
+.+.....+|+ ..+++||+||+|||++|.+|+++ ++.. .........++..+..... .++.-..
T Consensus 183 l~~~~~~~~g~-------~~tv~A~~lVGaDGa~S~VR~~l----gi~~--~G~~~~~~~~v~dv~~~~~---~p~~~~~ 246 (634)
T PRK08294 183 LRRTDGEHEGE-------EETVRAKYVVGCDGARSRVRKAI----GREL--RGDSANHAWGVMDVLAVTD---FPDIRLK 246 (634)
T ss_pred EEECCCCCCCc-------eEEEEeCEEEECCCCchHHHHhc----CCCc--cCCcccceEEEEEEEEccC---CCCcceE
Confidence 54310001222 26899999999999999999976 5543 1111122223332221111 1221111
Q ss_pred EeccCCCCCCcceEEEEEeCCCe-EEEEEEEcc-CC----CCCCCCcHHHHHHhhc--CCcchhcccCCceeee-cceee
Q 006466 331 TLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVAL-NY----HNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQY-GARTL 401 (644)
Q Consensus 331 ~~g~~~~~~~~g~~~l~~~~~~~-~~ig~~~~~-d~----~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~i~~-~~~~i 401 (644)
...+ .. ..|...++|.+++. +.+.+.... +. .....++.+..+.++. .|...++ +.+.| ....+
T Consensus 247 ~~~~-~~--~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~----~~v~w~s~y~i 319 (634)
T PRK08294 247 CAIQ-SA--SEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV----KEVAWWSVYEV 319 (634)
T ss_pred EEEe-cC--CCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce----eEEeEEecccc
Confidence 1101 11 12345677887764 343322111 10 0112333333333332 1211111 11221 11000
Q ss_pred ec---CCcccCC---c-ccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHH
Q 006466 402 NE---GGLQSIP---Y-PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWV 471 (644)
Q Consensus 402 ~~---gg~~~~~---~-~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~ 471 (644)
.. ..|...+ . +..+||+|+|||||.++|..|||+|++|+||..||+.|+..+.. ...|+.|+.+++.. .
T Consensus 320 ~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~-a 398 (634)
T PRK08294 320 GQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAI-A 398 (634)
T ss_pred cceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-H
Confidence 00 0011001 1 23589999999999999999999999999999999999887654 46899999999974 6
Q ss_pred HHHHHHHhcchhhhhc
Q 006466 472 WQELQRARNYRPAFEY 487 (644)
Q Consensus 472 ~~~l~~~r~~~~~~~~ 487 (644)
.+.+...+.+..+|..
T Consensus 399 ~~li~~~~~~~~l~~~ 414 (634)
T PRK08294 399 QELIDFDREWSTMMAA 414 (634)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6677777777777743
No 37
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.95 E-value=4.2e-26 Score=247.95 Aligned_cols=335 Identities=13% Similarity=0.097 Sum_probs=194.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCC-CCC--CCc-ccccCccChHHHHHHhhhhhhcCCCeee-ec
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEV--GAH-IISGNVFEPRALNELLPQWKQEEAPIRV-PV 181 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~-~~~--g~~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~~ 181 (644)
.+||+||||||+|+++|+.|++. |++|+|||+. +.. +.. ...+..+.++++ +++..++..+..... ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES------DLRIAVIEGQLPEEALNELPDVRVSALSRSSE-HILRNLGAWQGIEARRAA 76 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC------CCEEEEEcCCCCcccccCCCCcceecccHHHH-HHHHhCCchhhhhhhhCC
Confidence 58999999999999999999999 9999999996 321 110 112345666555 444444332211110 11
Q ss_pred cCCcEEEeccC--CccccCCCC--CCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 182 SSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 182 ~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
....+.+.+.. ..+.++... ....++.+.+..|.+.|.+++.+. |++++++++|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~--- 151 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDN--- 151 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECC---
Confidence 11122222221 112222111 112267889999999999998775 6999999999999877643 3 466655
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccc-eeEEEEEEeecCCCCCCCcEEEEeccC
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWP 335 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~h~~g~~ 335 (644)
|.+++||+||+|||.+|.+|+++ ++.. ....| ..++......+ ....+.....++
T Consensus 152 ------------g~~~~a~lvIgADG~~S~vR~~~----~~~~----~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~-- 207 (405)
T PRK08850 152 ------------GQALTAKLVVGADGANSWLRRQM----DIPL----THWDYGHSALVANVRTV--DPHNSVARQIFT-- 207 (405)
T ss_pred ------------CCEEEeCEEEEeCCCCChhHHHc----CCCe----eEEeeccEEEEEEEEcc--CCCCCEEEEEEc--
Confidence 67899999999999999999865 4442 11111 12222222221 112222222221
Q ss_pred CCCCCcceEEEEEeCC-CeEEEEEEEccCCCC--CCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcc
Q 006466 336 LDQKTYGGSFLYHMND-RQIALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (644)
Q Consensus 336 ~~~~~~g~~~l~~~~~-~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~ 412 (644)
.. |...++|..+ +...+.+........ ...+..+..+.+.. .+...+...+.... ....+. .....++|
T Consensus 208 -~~---g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~pl-~~~~~~~~ 279 (405)
T PRK08850 208 -PQ---GPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTA--EFDNRLGLCEVVGE-RQAFPL-KMRYARDF 279 (405)
T ss_pred -CC---CceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhCcEEEccc-ccEEec-ceeecccc
Confidence 11 2234667765 344554443221100 00111111111111 00000100000000 001111 11234678
Q ss_pred cCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhcccc---C---CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~---~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
..+|++|+|||||.++|..|||+|+||+||..||+.|..... + ...|+.|+++++.. ..+.+..++.+..+|.
T Consensus 280 ~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~~ 358 (405)
T PRK08850 280 VRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLFS 358 (405)
T ss_pred ccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999986542 1 35799999888764 7777777777777774
No 38
>PRK06996 hypothetical protein; Provisional
Probab=99.95 E-value=1.1e-25 Score=243.87 Aligned_cols=334 Identities=18% Similarity=0.156 Sum_probs=192.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCC----CeEEEEcCCCCCCCc-ccccCccChHHHHHHhhhhh---hcCCC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD----LSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQWK---QEEAP 176 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G----~~V~viEk~~~~g~~-~~~g~~i~~~~l~~l~~~~~---~~~~~ 176 (644)
.+.+||+||||||+|+++|+.|++. | ++|+|+|+.+..... ...+..+.+.++. ++..++ ....+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~------g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~-~L~~lg~~~~~~~~ 81 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR------SATRALSIALIDAREPAASANDPRAIALSHGSRV-LLETLGAWPADATP 81 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCcCCceEEEecCCCCCcCCCCceEEEecHHHHH-HHHhCCCchhcCCc
Confidence 4568999999999999999999998 6 579999998643211 1134456666653 444433 32222
Q ss_pred eeeeccCCcEEEeccC--Ccccc--CCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeC
Q 006466 177 IRVPVSSDKFWFLTKD--RAFSL--PSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN 252 (644)
Q Consensus 177 ~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~ 252 (644)
+. .+.+.+.. ....+ ........+|++++..|.+.|.+.+++.|++++++++++++..++++ | .|.+.
T Consensus 82 ~~------~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~ 153 (398)
T PRK06996 82 IE------HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALG 153 (398)
T ss_pred cc------EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEEC
Confidence 11 12111110 01111 11111123689999999999999999999999999999999777654 2 35554
Q ss_pred cCccccCCCcccccccceEEEcCEEEEecCC-CCcchHHHHHHcCCCcccccCcccce-eEEEEEEeecCCCCCCCcEEE
Q 006466 253 DMGIAKDGSKKENFQRGVELRGRITLLAEGC-RGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILH 330 (644)
Q Consensus 253 d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~-~s~l~~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~h 330 (644)
+ .+| +.+++||+||+|||. +|.+++.+ +... ....|+ .++...+.. ....++....
T Consensus 154 ~----~~g--------~~~i~a~lvIgADG~~~s~~r~~~----~~~~----~~~~~~~~~~~~~v~~--~~~~~~~~~~ 211 (398)
T PRK06996 154 T----PQG--------ARTLRARIAVQAEGGLFHDQKADA----GDSA----RRRDYGQTAIVGTVTV--SAPRPGWAWE 211 (398)
T ss_pred C----CCc--------ceEEeeeEEEECCCCCchHHHHHc----CCCc----eeeecCCeEEEEEEEc--cCCCCCEEEE
Confidence 3 111 257999999999997 46656643 3332 111221 122211222 1112222211
Q ss_pred EeccCCCCCCcceEEEEEeCCCe---EEEEEEEccCCCC--CCCCcHHHHHHhhcCCcchhcccCCceeeecce-eeecC
Q 006466 331 TLGWPLDQKTYGGSFLYHMNDRQ---IALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGAR-TLNEG 404 (644)
Q Consensus 331 ~~g~~~~~~~~g~~~l~~~~~~~---~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~-~i~~g 404 (644)
.+. .. |...++|..++. ..+.+....+... ...+..+..+.+... +...+. ........ .++..
T Consensus 212 ~~~---~~---G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~~~~~~~~l~ 281 (398)
T PRK06996 212 RFT---HE---GPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAA--FGTRMG--RFTRIAGRHAFPLG 281 (398)
T ss_pred Eec---CC---CCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHH--hccccC--ceEEecceEEEeee
Confidence 111 11 223455665543 3333332211000 011111111222110 111111 11111101 11111
Q ss_pred CcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHhHHHHHHHHHhcchhh
Q 006466 405 GLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPA 484 (644)
Q Consensus 405 g~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~ 484 (644)
....++|..+|++|+|||||.++|+.|||+|+||+||..||++|........+|+.|+++++.. ....+..++.+..+
T Consensus 282 -~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~l~~~ 359 (398)
T PRK06996 282 -LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRALD-RRVTIGATDLLPRL 359 (398)
T ss_pred -cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2344678999999999999999999999999999999999999976332346799999999865 77777888888777
Q ss_pred hhc
Q 006466 485 FEY 487 (644)
Q Consensus 485 ~~~ 487 (644)
|..
T Consensus 360 ~~~ 362 (398)
T PRK06996 360 FTV 362 (398)
T ss_pred HcC
Confidence 753
No 39
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.95 E-value=4.7e-26 Score=246.24 Aligned_cols=334 Identities=15% Similarity=0.116 Sum_probs=193.0
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
+..+||+||||||+|+++|+.|++. |++|+||||.+.... . .+..+.+.++ +++..++.............
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~------G~~v~liE~~~~~~~-~-r~~~l~~~s~-~~l~~lgl~~~~~~~~~~~~ 75 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA------GASVALVAPEPPYAD-L-RTTALLGPSI-RFLERLGLWARLAPHAAPLQ 75 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCeEEEEeCCCCCCC-c-chhhCcHHHH-HHHHHhCchhhhHhhcceee
Confidence 3468999999999999999999999 999999999876532 1 2234454443 34433322111111111112
Q ss_pred cEEEeccCCc------cccCC--CCCCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCc
Q 006466 185 KFWFLTKDRA------FSLPS--PFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMG 255 (644)
Q Consensus 185 ~~~~~~~~~~------~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g 255 (644)
.+.+.+.... ..+.. ......+|.+++..+.+.|.+.+.+.+ +. +++++|+++..++++ + .|++.+
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~-- 150 (388)
T PRK07494 76 SMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLAD-- 150 (388)
T ss_pred EEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECC--
Confidence 2223222111 11111 011223688999999999999998875 55 789999999877644 3 366654
Q ss_pred cccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccC
Q 006466 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (644)
Q Consensus 256 ~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~ 335 (644)
|.+++||+||+|||.+|.+++++ ++... .......+ +. ..+.......+.....+.
T Consensus 151 -------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~~-~~~~~~~~--~~--~~v~~~~~~~~~~~~~~~-- 206 (388)
T PRK07494 151 -------------GTTLSARLVVGADGRNSPVREAA----GIGVR-TWSYPQKA--LV--LNFTHSRPHQNVSTEFHT-- 206 (388)
T ss_pred -------------CCEEEEeEEEEecCCCchhHHhc----CCCce-ecCCCCEE--EE--EEEeccCCCCCEEEEEeC--
Confidence 56799999999999999988764 44421 11111111 11 122211111121111111
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEccCCC-C-CCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCccc
Q 006466 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYH-N-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (644)
Q Consensus 336 ~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~-~-~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~ 413 (644)
.. |..+++|..++..++.+....+.. . ...++.+..+.+.. .+..++...+.... ....+... ...++|.
T Consensus 207 -~~---g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~l~~-~~~~~~~ 278 (388)
T PRK07494 207 -EG---GPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEE--RMQSMLGKLTLEPG-RQAWPLSG-QVAHRFA 278 (388)
T ss_pred -CC---CcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhcCCeEEccC-CcEeechH-HHHHhhc
Confidence 11 335678887766655544322110 0 01122222222221 12222221111100 00111111 1225688
Q ss_pred CCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhh
Q 006466 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~ 485 (644)
.+|++|+|||||.++|+.|||+++||+||..||+.|.+...+ ...|+.|+++++.. +...+.....+...|
T Consensus 279 ~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 352 (388)
T PRK07494 279 AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPD-ILSRTASVDLLNRSL 352 (388)
T ss_pred cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999875433 36899999999864 555555555555555
No 40
>PLN02985 squalene monooxygenase
Probab=99.95 E-value=3.1e-25 Score=245.96 Aligned_cols=358 Identities=14% Similarity=0.174 Sum_probs=206.0
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeee-ecc
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV-PVS 182 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~~~ 182 (644)
....+||+|||||++|+++|+.|++. |.+|+|+||...... ...|..+.+.++ +.+..++..+..... ...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~------G~~V~vlEr~~~~~~-~~~g~~L~p~g~-~~L~~LGl~d~l~~~~~~~ 111 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD------GRRVHVIERDLREPE-RMMGEFMQPGGR-FMLSKLGLEDCLEGIDAQK 111 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc------CCeEEEEECcCCCCc-cccccccCchHH-HHHHHcCCcchhhhccCcc
Confidence 34568999999999999999999999 999999999864322 224666776654 233333322211110 111
Q ss_pred CCcEEEeccCCc--cccCCCCC----CCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCc
Q 006466 183 SDKFWFLTKDRA--FSLPSPFS----NRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (644)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~~~----~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g 255 (644)
...+.+..+... ..++.... ...++.++|..|.+.|.+++.+. ||+++.+ +++++..++ +.+.+|++.+
T Consensus 112 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~-- 187 (514)
T PLN02985 112 ATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN-- 187 (514)
T ss_pred cccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc--
Confidence 222333222222 23331111 12247899999999999999876 6998876 577776654 5666777643
Q ss_pred cccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccC
Q 006466 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (644)
Q Consensus 256 ~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~ 335 (644)
.+|+ ..++.||+||+|||.+|.+|+++. ... .....+..++.. .......++....+++
T Consensus 188 --~dG~-------~~~~~AdLVVgADG~~S~vR~~l~----~~~---~~~~s~~~~~~~---~~~~~~~~~~~~~~~~-- 246 (514)
T PLN02985 188 --SAGE-------ETTALAPLTVVCDGCYSNLRRSLN----DNN---AEVLSYQVGYIS---KNCRLEEPEKLHLIMS-- 246 (514)
T ss_pred --CCCC-------EEEEECCEEEECCCCchHHHHHhc----cCC---CcceeEeEEEEE---ccccCCCCCcceEEcC--
Confidence 2333 145789999999999999999772 221 111233333321 1111111222211122
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhc--CC----cchhcccCC-ceeeecceeeecCCccc
Q 006466 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HP----AIKPLLEGG-TVVQYGARTLNEGGLQS 408 (644)
Q Consensus 336 ~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p----~i~~~l~~~-~~i~~~~~~i~~gg~~~ 408 (644)
.. +...+|+..++.+.+.+....+. .+.....+....++. .| .+++.+..+ +... ..+..+.. ..+
T Consensus 247 --~~--~~~l~ypi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~-~~~~~p~~-~l~ 319 (514)
T PLN02985 247 --KP--SFTMLYQISSTDVRCVFEVLPDN-IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA-HIKVVPTK-RMS 319 (514)
T ss_pred --CC--ceEEEEEeCCCeEEEEEEEeCCC-CCCcChhhHHHHHHhccccccCHHHHHHHHhhccccc-ceeecCcc-ccc
Confidence 11 33567888877766555443321 122222121111111 12 233332210 0000 00111111 111
Q ss_pred CCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccc--cC----CchHHHHHHHHHHhHHHHHHHHHhcch
Q 006466 409 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL--HE----DSNMEIYWDTLQKSWVWQELQRARNYR 482 (644)
Q Consensus 409 ~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l--~~----~~~l~~Ye~~~~~~~~~~~l~~~r~~~ 482 (644)
...+..+|++|||||||+++|+.|||+++|++||.+|++.|...- .+ .++|+.|+..|+.+ .......++.+.
T Consensus 320 ~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r-~~~i~~la~al~ 398 (514)
T PLN02985 320 ATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM-SATVNTLGNAFS 398 (514)
T ss_pred ccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Confidence 234456899999999999999999999999999999999997531 11 36899999999875 777778888888
Q ss_pred hhhhc---CChHHHHHHHHHHHH
Q 006466 483 PAFEY---GLLPGLAICGLEHYI 502 (644)
Q Consensus 483 ~~~~~---g~~~~~~~~~~~~~~ 502 (644)
++|.. .-+..+-...|..+.
T Consensus 399 ~~f~a~~~~~~~~l~~~~f~y~~ 421 (514)
T PLN02985 399 QVLVASTDEAKEAMRQGCYDYLC 421 (514)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 88842 113344444444443
No 41
>PRK06834 hypothetical protein; Provisional
Probab=99.95 E-value=9.9e-26 Score=249.28 Aligned_cols=327 Identities=17% Similarity=0.132 Sum_probs=188.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCee--eeccCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIR--VPVSSD 184 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~--~~~~~~ 184 (644)
.+||+||||||+|+++|+.|++. |++|+||||.+........+..+.++++ +++..++..+.... ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~-~~L~~lGl~~~l~~~~~~~~~~ 75 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA------GVDVAIVERRPNQELVGSRAGGLHARTL-EVLDQRGIADRFLAQGQVAQVT 75 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCCcceeeECHHHH-HHHHHcCcHHHHHhcCCccccc
Confidence 48999999999999999999999 9999999998754311112445777665 33333222110000 000001
Q ss_pred cEEEeccCCccccCC-CCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcc
Q 006466 185 KFWFLTKDRAFSLPS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (644)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~ 263 (644)
.+... .+++.. .......+.+.+..+.+.|.+.+++.|++|+++++++++..++++ + .|++.+
T Consensus 76 ~~~~~----~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~---------- 139 (488)
T PRK06834 76 GFAAT----RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSD---------- 139 (488)
T ss_pred eeeeE----ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECC----------
Confidence 11110 011110 011123467889999999999999999999999999999987754 3 355544
Q ss_pred cccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcce
Q 006466 264 ENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGG 343 (644)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~ 343 (644)
|.++++|+||+|||.+|.+++++ ++..+ ........+ +. -..++... ..+ .+ ....|.
T Consensus 140 -----g~~i~a~~vVgADG~~S~vR~~l----gi~~~-g~~~~~~~~-~~-dv~~~~~~-~~~--~~-------~~~~g~ 197 (488)
T PRK06834 140 -----GRTLRAQYLVGCDGGRSLVRKAA----GIDFP-GWDPTTSYL-IA-EVEMTEEP-EWG--VH-------RDALGI 197 (488)
T ss_pred -----CCEEEeCEEEEecCCCCCcHhhc----CCCCC-CCCcceEEE-EE-EEEecCCC-Ccc--ee-------eCCCce
Confidence 45799999999999999988764 55531 111111111 11 11111110 000 00 011122
Q ss_pred EEEEEeC-CCeEEEEEEEccCCCCCCCCcHHHHH-Hhhc-CCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEE
Q 006466 344 SFLYHMN-DRQIALGLVVALNYHNPFLNPYEEFQ-KFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAII 420 (644)
Q Consensus 344 ~~l~~~~-~~~~~ig~~~~~d~~~~~~~~~~~~~-~~~~-~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~Li 420 (644)
..+.+.. ++...+.+...........+ .+++. .+.. .. .-+.. ....+.. .++. .....++|..+||+|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g---~~~~~-~~~~~~~-~~~~-~~r~a~~~~~gRV~La 270 (488)
T PRK06834 198 HAFGRLEDEGPVRVMVTEKQVGATGEPT-LDDLREALIAVYG---TDYGI-HSPTWIS-RFTD-MARQAASYRDGRVLLA 270 (488)
T ss_pred EEEeccCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHhhC---CCCcc-ccceeEE-eccc-cceecccccCCcEEEE
Confidence 2234443 45555544322111111122 23332 2221 10 00000 0111110 0111 1123568889999999
Q ss_pred ccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 421 GCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 421 GDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
|||||.++|+.|||+|++|+||..||+.|+..+.. ...|+.|+.+++.. ..+.+..+.....++.
T Consensus 271 GDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~-~~~~~~~t~~~~~~~~ 338 (488)
T PRK06834 271 GDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPV-AARVLRNTMAQVALLR 338 (488)
T ss_pred eeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999887654 46899999999864 5555555554444443
No 42
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=1.5e-25 Score=243.16 Aligned_cols=331 Identities=14% Similarity=0.124 Sum_probs=188.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+||||||+||++|+.|++. |++|+|+||.+.+.. ...|..+.++++ +++..++..+...........+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~------G~~V~i~E~~~~~~~-~g~gi~l~~~~~-~~L~~~Gl~~~l~~~~~~~~~~~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR------GWAVTIIEKAQELSE-VGAGLQLAPNAM-RHLERLGVADRLSGTGVTPKALY 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-CCccceeChhHH-HHHHHCCChHHHhhcccCcceEE
Confidence 5799999999999999999999 999999999886542 224556667665 33333332211111111112222
Q ss_pred EeccCCc---cc--c---CCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 188 FLTKDRA---FS--L---PSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 188 ~~~~~~~---~~--~---~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
+.+.... .. + .........+.++|..|.+.|.+.+.+. |++++++++|+++..++++ + .|++.+ .
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~----~ 148 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIR----T 148 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEe----C
Confidence 2221110 00 0 0000111234689999999999998764 7999999999999876643 3 344422 0
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecC--CC-----CCCCcEEEE
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE--GK-----HNPGEILHT 331 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~-----~~~g~~~h~ 331 (644)
+ ++.++.||+||+|||.+|.+|+++ +... ..... ...+......+. .. ...+....+
T Consensus 149 ~--------~~~~~~adlvIgADG~~S~vR~~~----~~~~-~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (400)
T PRK06475 149 N--------SVETVSAAYLIACDGVWSMLRAKA----GFSK-ARFSG---HIAWRTTLAADALPASFLSAMPEHKAVSAW 212 (400)
T ss_pred C--------CCcEEecCEEEECCCccHhHHhhc----CCCC-CCcCC---ceEEEEEeehhhcchhhhhhcccCCceEEE
Confidence 0 135799999999999999999975 2221 01111 112222221111 00 011112222
Q ss_pred eccCCCCCCcceEEEEEeCCCeEEEEEEEccC-C-CCCC---CCcHHHHHHhhc-CCcchhcccCCceeeecceeeecCC
Q 006466 332 LGWPLDQKTYGGSFLYHMNDRQIALGLVVALN-Y-HNPF---LNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGG 405 (644)
Q Consensus 332 ~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d-~-~~~~---~~~~~~~~~~~~-~p~i~~~l~~~~~i~~~~~~i~~gg 405 (644)
++ ++ +...+||+.++.....+..... . ...+ ....+..+.+.. .+.+..+++...... ..+-..
T Consensus 213 ~g----~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~~ 282 (400)
T PRK06475 213 LG----NK--AHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLFE 282 (400)
T ss_pred Ec----CC--CEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCcc
Confidence 21 11 2355778776543322221111 0 0011 122222223332 344555554322211 011111
Q ss_pred cccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHhHHHHHHHHHhc
Q 006466 406 LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARN 480 (644)
Q Consensus 406 ~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~~~l~~Ye~~~~~~~~~~~l~~~r~ 480 (644)
....+.|..+|++|||||||.++|+.|||+++||+||..||++|... .-..+|+.|++.++.+ +.+.+..++.
T Consensus 283 ~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~-~~~~aL~~Ye~~R~~r-~~~~~~~s~~ 355 (400)
T PRK06475 283 MADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDSD-DQSAGLKRFDSVRKER-IAAVAKRGQL 355 (400)
T ss_pred cCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 11223345689999999999999999999999999999999999532 1146899999999875 6666666653
No 43
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.95 E-value=1.8e-25 Score=241.28 Aligned_cols=336 Identities=13% Similarity=0.120 Sum_probs=190.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCC--CC--c-ccccCccChHHHHHHhhhhhhcCCCeee-e
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GA--H-IISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~--g~--~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~ 180 (644)
.+||+||||||+|+++|+.|++. |++|+|||+.+.. .. . ......+.+.++ +++..++..+..... .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lG~~~~~~~~~~ 75 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ------GRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSV-DLLESLGAWSSIVAMRV 75 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC------CCcEEEEcCCCcccCCCCCCCCccEEEecHHHH-HHHHHCCCchhhhHhhC
Confidence 47999999999999999999999 9999999987521 11 0 001124666655 344444432111110 0
Q ss_pred ccCCcEEEec-cCCccccCCC-C-CCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 181 VSSDKFWFLT-KDRAFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
.....+.... ......++.. . ....+|++.+..|...|.+++++. |++++++++|++++.++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~--- 150 (384)
T PRK08849 76 CPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLES--- 150 (384)
T ss_pred CccceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECC---
Confidence 0011111111 1111122211 0 111247788888999999887764 6999999999999887754 3 466655
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~ 336 (644)
|.+++||+||+|||.+|.+|+++ ++.. .......+++ +..+.......+.....+ ++.
T Consensus 151 ------------g~~~~~~lvIgADG~~S~vR~~~----gi~~-~~~~~~~~~~----v~~~~~~~~~~~~~~~~~-~~~ 208 (384)
T PRK08849 151 ------------GAEIEAKWVIGADGANSQVRQLA----GIGI-TAWDYRQHCM----LINVETEQPQQDITWQQF-TPS 208 (384)
T ss_pred ------------CCEEEeeEEEEecCCCchhHHhc----CCCc-eeccCCCeEE----EEEEEcCCCCCCEEEEEe-CCC
Confidence 67899999999999999999875 4332 0111111111 111221111222211111 111
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccC-CC-CCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccC
Q 006466 337 DQKTYGGSFLYHMNDRQIALGLVVALN-YH-NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~ig~~~~~d-~~-~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~ 414 (644)
|...++|+.++...+-+..... .. ....++.+..+.+... +...+..-....+. ..+. ....+++|..
T Consensus 209 -----g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~--~~~l-~~~~~~~~~~ 278 (384)
T PRK08849 209 -----GPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRH--FPAELGEIKVLQHG--SFPL-TRRHAQQYVK 278 (384)
T ss_pred -----CCEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHH--hhhhhCcEEeccce--Eeec-cccccchhcc
Confidence 1123456655443332221110 00 0012222222333211 01111110111111 1111 1224568999
Q ss_pred CCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHhHHHHHHHHHhcchhhhhc
Q 006466 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-HEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (644)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l-~~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~~ 487 (644)
+|++|+|||||.|+|+.|||+|+||+||..|++.|.... ..+.+|+.||+.++.. ........+.+..+|..
T Consensus 279 grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~~ 351 (384)
T PRK08849 279 NNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPD-NLLMQTGMDLFYKTFSN 351 (384)
T ss_pred CCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987432 2246899999999875 66666777777777754
No 44
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.95 E-value=8.4e-26 Score=244.22 Aligned_cols=336 Identities=16% Similarity=0.142 Sum_probs=199.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc--c--cccCccChHHHHHHhhhhhhcCCCeeee-
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH--I--ISGNVFEPRALNELLPQWKQEEAPIRVP- 180 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~--~--~~g~~i~~~~l~~l~~~~~~~~~~~~~~- 180 (644)
+.+||+||||||||+++|+.|++. |++|+|+||.+..... . ..+..+.+.++ +++..++.........
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~~g~~~~~~~~~~ 76 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS------GLRVALLAPRAPPRPADDAWDSRVYAISPSSQ-AFLERLGVWQALDAARL 76 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCccccCCCCCCceEeecHHHH-HHHHHcCchhhhhhhcC
Confidence 468999999999999999999999 9999999999875421 0 11133455554 3444443221110000
Q ss_pred ccCCcEEEecc-CCccccCCC--CCCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 181 VSSDKFWFLTK-DRAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
.....+.+... ...+.+... ......+.+++..+.+.|.+.+++.| ++++ +++|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~-~v~~~~--- 150 (388)
T PRK07608 77 APVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-A-TLTLAD--- 150 (388)
T ss_pred CcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-E-EEEECC---
Confidence 11112222221 111221111 11123577999999999999999988 9999 9999999876643 3 476655
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~ 336 (644)
|.+++||+||+|||.+|.+++.+ ++.. ...+ ....++......+. ...+...++++
T Consensus 151 ------------g~~~~a~~vI~adG~~S~vr~~~----~~~~--~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~--- 206 (388)
T PRK07608 151 ------------GQVLRADLVVGADGAHSWVRSQA----GIKA--ERRP-YRQTGVVANFKAER--PHRGTAYQWFR--- 206 (388)
T ss_pred ------------CCEEEeeEEEEeCCCCchHHHhc----CCCc--cccc-cCCEEEEEEEEecC--CCCCEEEEEec---
Confidence 56799999999999999887754 4442 1111 11233332223222 11222233321
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccC
Q 006466 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~ 414 (644)
.+ +..+++|.+++.+.+.+....+.... ..++.+..+.++.. +...+..-..+.. ...++. ....+++|..
T Consensus 207 -~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 279 (388)
T PRK07608 207 -DD--GILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA--SGGRLGRLECVTP-AAGFPL-RLQRVDRLVA 279 (388)
T ss_pred -CC--CCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHHhcCCceecCC-cceeec-chhhhhhhhc
Confidence 21 33578899888776655432111000 01222222222210 0001110011100 001111 1123567889
Q ss_pred CCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhcccc-----CCchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-----EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~-----~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
+|++|||||||.++|+.|||+++||+||..||+.|..... ...+|+.|+++++.. +......++.+..+|.
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 355 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARRED-ILALQVATDGLQRLFA 355 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999986531 125799999999865 6677777777777774
No 45
>PRK07190 hypothetical protein; Provisional
Probab=99.95 E-value=2.2e-25 Score=246.32 Aligned_cols=328 Identities=16% Similarity=0.134 Sum_probs=189.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhh------cCCCeeee
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQ------EEAPIRVP 180 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~------~~~~~~~~ 180 (644)
.+||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.++.+ +++..++. ...+....
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~------Gi~V~llEr~~~~~~~-gra~~l~~~tl-e~L~~lGl~~~l~~~~~~~~~~ 76 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC------GLNTVIVDKSDGPLEV-GRADALNARTL-QLLELVDLFDELYPLGKPCNTS 76 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc------CCCEEEEeCCCccccc-ccceEeCHHHH-HHHHhcChHHHHHhhCccceeE
Confidence 58999999999999999999999 9999999999875432 22445677665 33333221 11121110
Q ss_pred -ccCCcEEEeccCCc-c-ccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc
Q 006466 181 -VSSDKFWFLTKDRA-F-SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (644)
Q Consensus 181 -~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~ 257 (644)
+.... .++..... + .++. ......+.+.+..+.+.|.+.+++.|++++++++|+++..++++ + .|.+.+
T Consensus 77 ~~~~~g-~~i~~~~~~~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~---- 148 (487)
T PRK07190 77 SVWANG-KFISRQSSWWEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSN---- 148 (487)
T ss_pred EEecCC-ceEeeccccCccCCc-CCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECC----
Confidence 00000 00100000 0 0000 01112356788999999999999999999999999999988765 3 244443
Q ss_pred cCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006466 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (644)
Q Consensus 258 ~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~ 337 (644)
|.+++||+||+|||.+|.+|+++ ++..+ ...+...+.-+......+... .+.. .. + ...
T Consensus 149 -----------g~~v~a~~vVgADG~~S~vR~~l----gi~f~-g~~~~~~~~~~d~~~~~~~~~-~~~~-~~-~--~~~ 207 (487)
T PRK07190 149 -----------GERIQSRYVIGADGSRSFVRNHF----NVPFE-IIRPQIIWAVIDGVIDTDFPK-VPEI-IV-F--QAE 207 (487)
T ss_pred -----------CcEEEeCEEEECCCCCHHHHHHc----CCCcc-ccccceeEEEEEEEEccCCCC-Ccce-EE-E--EcC
Confidence 56899999999999999999865 55531 112221111111111111010 0111 11 1 111
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhc--CCcchhcccCCceeeecceeeecCCcccCCccc-C
Q 006466 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV-F 414 (644)
Q Consensus 338 ~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~-~ 414 (644)
.|..+++|.+++...+-+. .+ .+.....+..+.+.. .|.- +. -..+.|.. .++. ......++. .
T Consensus 208 ---~g~~~~~p~~~~~~r~~~~--~~--~~~~t~~~~~~~l~~~~~~~~---~~-~~~~~w~s-~~~~-~~r~a~~~r~~ 274 (487)
T PRK07190 208 ---TSDVAWIPREGEIDRFYVR--MD--TKDFTLEQAIAKINHAMQPHR---LG-FKEIVWFS-QFSV-KESVAEHFFIQ 274 (487)
T ss_pred ---CCCEEEEECCCCEEEEEEE--cC--CCCCCHHHHHHHHHHhcCCCC---Cc-eEEEEEEE-Eeee-CcEehhhcCcC
Confidence 1335667776654432211 11 112232232233322 1110 11 01122211 0111 111234564 6
Q ss_pred CCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHhHHHHHHHHHhcchhhh
Q 006466 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~ 485 (644)
+||+|+|||||.++|..|||+|++|+||..|++.|+..+.. +..|+.|+.+++.. ..+.+...+.+...+
T Consensus 275 gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~-a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 275 DRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPV-AQGVIETSGELVRST 347 (487)
T ss_pred CcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999876654 46799999999864 555666666554443
No 46
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-25 Score=240.25 Aligned_cols=330 Identities=17% Similarity=0.123 Sum_probs=183.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
+..||+||||||+||++|+.|++. |++|+|+||.+........|..+.+..+ +++..++..... ........
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~g~gi~l~~~~~-~~l~~lg~~~~~-~~~~~~~~ 76 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA------GWDVDVFERSPTELDGRGAGIVLQPELL-RALAEAGVALPA-DIGVPSRE 76 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcCCCCceeEeCHHHH-HHHHHcCCCccc-ccccCccc
Confidence 358999999999999999999999 9999999998753221122344566554 455554432211 11111112
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
..+.......-.... .....+.+..+.+.|.+.+ .+++|+++++|++++.++++ | .|.+.+
T Consensus 77 ~~~~~~~g~~~~~~~---~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v-~v~~~~------------ 137 (386)
T PRK07236 77 RIYLDRDGRVVQRRP---MPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDR-V-TARFAD------------ 137 (386)
T ss_pred eEEEeCCCCEeeccC---CCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCe-E-EEEECC------------
Confidence 222222111100000 0112246777888887644 24789999999999887644 3 466655
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCccccee-EEEEEE---eecCCC--CCCCcEEEEeccCCCCC
Q 006466 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVW---EIDEGK--HNPGEILHTLGWPLDQK 339 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~--~~~g~~~h~~g~~~~~~ 339 (644)
|.+++||+||+|||.+|.+|+++.. .. .+...+. .+..+. .++... ........+++ ++
T Consensus 138 ---g~~~~ad~vIgADG~~S~vR~~l~~---~~-----~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~ 202 (386)
T PRK07236 138 ---GRRETADLLVGADGGRSTVRAQLLP---DV-----RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLG----PG 202 (386)
T ss_pred ---CCEEEeCEEEECCCCCchHHHHhCC---CC-----CCCcCCeEEEEEecchHHcCchhhhhcccceEEEEc----CC
Confidence 6789999999999999999998731 11 1111111 111111 111100 00011111111 11
Q ss_pred CcceEEEEEeCC---------CeEEEEEEEccCCC-------------------CCCCCcHHHHHHh----h--cCCcch
Q 006466 340 TYGGSFLYHMND---------RQIALGLVVALNYH-------------------NPFLNPYEEFQKF----K--HHPAIK 385 (644)
Q Consensus 340 ~~g~~~l~~~~~---------~~~~ig~~~~~d~~-------------------~~~~~~~~~~~~~----~--~~p~i~ 385 (644)
+..+.|+..+ ....+.+....+.. .+.....+.++.+ . ..|.+.
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (386)
T PRK07236 203 --SHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFA 280 (386)
T ss_pred --ceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHH
Confidence 1133444321 11222222211100 0000011112222 1 234455
Q ss_pred hcccCCceeeecceeeecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhcccc-CCchHHHHHH
Q 006466 386 PLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWD 464 (644)
Q Consensus 386 ~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~-~~~~l~~Ye~ 464 (644)
.+++..... +... +.. ...++|..+|++|+|||||.++|+.|||+++||+||..||+.|..... ...+|+.|++
T Consensus 281 ~~~~~~~~~-~~~~-~~~---~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~~al~~Ye~ 355 (386)
T PRK07236 281 ELVEATAQP-FVQA-IFD---LEVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEA 355 (386)
T ss_pred HHHhhCcCc-hhhh-hhc---ccCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555432211 1100 111 124678899999999999999999999999999999999999987533 2478999999
Q ss_pred HHHHhHHHHHHHHHhcchhhh
Q 006466 465 TLQKSWVWQELQRARNYRPAF 485 (644)
Q Consensus 465 ~~~~~~~~~~l~~~r~~~~~~ 485 (644)
.++.+ ..+.+..++.+...+
T Consensus 356 ~R~~r-~~~~~~~s~~~~~~~ 375 (386)
T PRK07236 356 ERLAV-GAAIVARGRRLGARL 375 (386)
T ss_pred HhhHH-HHHHHHHHHHHHHHH
Confidence 99975 666666666554433
No 47
>PTZ00367 squalene epoxidase; Provisional
Probab=99.94 E-value=5.1e-25 Score=245.39 Aligned_cols=366 Identities=14% Similarity=0.173 Sum_probs=202.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
.++||+||||||+|+++|+.|++. |++|+|+||.+........|..+.+.++ +.+..|+..+...........
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~------G~~V~VlEr~~~~~~~r~~G~~L~p~g~-~~L~~LGL~d~l~~i~~~~~~ 104 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ------GRKVLMLERDLFSKPDRIVGELLQPGGV-NALKELGMEECAEGIGMPCFG 104 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc------CCEEEEEccccccccchhhhhhcCHHHH-HHHHHCCChhhHhhcCcceee
Confidence 468999999999999999999999 9999999998621111124556777665 333444322111111111222
Q ss_pred EEEecc-CCccccCCCCCCCCcEEEcHHHHHHHHHHHH---HhcCCEEecCceEEEEEEcCCC---cEEEEEeCcCcc--
Q 006466 186 FWFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKA---EELGVEIYPGFAASEILYDADN---KVIGIGTNDMGI-- 256 (644)
Q Consensus 186 ~~~~~~-~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a---~~~Gv~i~~g~~v~~v~~~~~g---~v~gV~~~d~g~-- 256 (644)
+.+.+. .....++.. ....++.++++.+.+.|.+.+ ...+|+++.+ +|+++..++.+ .+.+|++...+.
T Consensus 105 ~~v~~~~G~~~~i~~~-~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~~~ 182 (567)
T PTZ00367 105 YVVFDHKGKQVKLPYG-AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEKYD 182 (567)
T ss_pred eEEEECCCCEEEecCC-CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCccc
Confidence 333332 222222221 112356678999999999887 3457999754 78888665432 366776543110
Q ss_pred --------ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcE
Q 006466 257 --------AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI 328 (644)
Q Consensus 257 --------~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~ 328 (644)
+.+.+.......|.+++||+||+|||.+|.+|+++ +... ..........|+.. .... ...++..
T Consensus 183 ~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l----~~~~-~~~~~~s~~~g~~~-~~~~--lp~~~~~ 254 (567)
T PTZ00367 183 VPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY----QHYT-PASENHSHFVGLVL-KNVR--LPKEQHG 254 (567)
T ss_pred ccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc----cCCC-CCcCcceEEEEEEE-eccc--CCCCCee
Confidence 00000011122467899999999999999999976 2221 01112222233221 1111 1112211
Q ss_pred EEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCC-cHHHHHHh-h-c-CCcchhcc----cCCceeeeccee
Q 006466 329 LHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLN-PYEEFQKF-K-H-HPAIKPLL----EGGTVVQYGART 400 (644)
Q Consensus 329 ~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~-~~~~~~~~-~-~-~p~i~~~l----~~~~~i~~~~~~ 400 (644)
..+++ ++ +..++||+.++...+.+..... ..+... ..+.+... . . .+.+++.+ .....+ +.
T Consensus 255 ~v~~g----~~--gpi~~yPl~~~~~r~lv~~~~~-~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l----~~ 323 (567)
T PTZ00367 255 TVFLG----KT--GPILSYRLDDNELRVLVDYNKP-TLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRI----RS 323 (567)
T ss_pred EEEEc----CC--ceEEEEEcCCCeEEEEEEecCC-cCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCe----EE
Confidence 11121 22 4468999998887766554321 111110 01111111 0 0 11122222 110111 11
Q ss_pred eecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccc-------cC----CchHH----HHHHH
Q 006466 401 LNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-------HE----DSNME----IYWDT 465 (644)
Q Consensus 401 i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l-------~~----~~~l~----~Ye~~ 465 (644)
.+...+ +..++..+|++|||||||+++|+.|||+++||+||.+||+.|.... .+ ..+|+ .|++.
T Consensus 324 ~p~~~~-p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~ 402 (567)
T PTZ00367 324 MPNARY-PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARN 402 (567)
T ss_pred eeHhhC-CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHH
Confidence 111111 1224677899999999999999999999999999999999997532 11 24466 99998
Q ss_pred HHHhHHHHHHHHHhcchhhhhcCChHHHHHHHHHHHHccC
Q 006466 466 LQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYILRG 505 (644)
Q Consensus 466 ~~~~~~~~~l~~~r~~~~~~~~g~~~~~~~~~~~~~~~~~ 505 (644)
++.. .......++.+..+|.. ..+..+...++..|
T Consensus 403 Rk~~-a~~i~~ls~aL~~lf~~----~~lr~~~~~y~~~g 437 (567)
T PTZ00367 403 RKTH-ASTINILSWALYSVFSS----PALRDACLDYFSLG 437 (567)
T ss_pred hhhh-HHHHHHHHHHHHHHhCh----HHHHHHHHHHHhcC
Confidence 8865 66666777777777755 23444444455444
No 48
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.94 E-value=2.6e-25 Score=240.62 Aligned_cols=336 Identities=15% Similarity=0.085 Sum_probs=190.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-----cccCccChHHHHHHhhhhhhcCCCeee-
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-----ISGNVFEPRALNELLPQWKQEEAPIRV- 179 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-----~~g~~i~~~~l~~l~~~~~~~~~~~~~- 179 (644)
..+||+||||||+|+++|+.|++. |++|+|||+.+...... .....+.+.++ +++..|+..+.....
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~lGl~~~~~~~~ 76 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH------GFSVAVLEHAAPAPFDADSQPDVRISAISAASV-ALLKGLGVWDAVQAMR 76 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC------CCEEEEEcCCCCCcccccCCCCceEEeccHHHH-HHHHHcCChhhhhhhh
Confidence 468999999999999999999999 99999999986422110 01124555554 344444322111100
Q ss_pred eccCCcEEEe-ccCCccccCC--CCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCc
Q 006466 180 PVSSDKFWFL-TKDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (644)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g 255 (644)
......+... .....+.+.. ......+|.++|..|.+.|.+.+++. |++++++++++++..++++ +.|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-- 152 (391)
T PRK08020 77 SHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLAD-- 152 (391)
T ss_pred CcccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECC--
Confidence 0000111111 0111111110 01112357899999999999998876 8999999999999876643 3466554
Q ss_pred cccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccC
Q 006466 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (644)
Q Consensus 256 ~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~ 335 (644)
|.+++||+||+|||.+|.+|+.+ ++... ..... ..++......+. ...+.....+..
T Consensus 153 -------------g~~~~a~~vI~AdG~~S~vR~~~----~~~~~-~~~y~--~~~~~~~~~~~~--~~~~~~~~~~~~- 209 (391)
T PRK08020 153 -------------GEEIQAKLVIGADGANSQVRQMA----GIGVH-GWQYR--QSCMLISVKCEN--PPGDSTWQQFTP- 209 (391)
T ss_pred -------------CCEEEeCEEEEeCCCCchhHHHc----CCCcc-ccCCC--ceEEEEEEEecC--CCCCEEEEEEcC-
Confidence 56799999999999999988865 44321 11111 112221122221 112222222211
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEccCCCCC-CCCcHHHHH-HhhcCCcchhcccCCceeeecceeeecCCcccCCccc
Q 006466 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNP-FLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (644)
Q Consensus 336 ~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~-~~~~~~~~~-~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~ 413 (644)
. |...++|..++...+.+......... ...+.+++. .+... +...+. +........++.. ....++|.
T Consensus 210 --~---g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~~~~~~pl~-~~~~~~~~ 279 (391)
T PRK08020 210 --S---GPRAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAH--FPARLG--AVTPVAAGAFPLT-RRHALQYV 279 (391)
T ss_pred --C---CCEEEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHH--hhhhcc--ceEeccccEeecc-eeehhhhc
Confidence 1 22346777666666554332110000 001122222 11110 011111 1111011111111 12356788
Q ss_pred CCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
.+|++|+|||||.++|+.|||+++||+||..||+.|.+.... ...|+.|++.++.. ....+.....+..+|.
T Consensus 280 ~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~~ 357 (391)
T PRK08020 280 QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMAD-NLLMQSGMDLFYAGFS 357 (391)
T ss_pred cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999876421 36799999998864 4444445555555553
No 49
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.94 E-value=3.1e-25 Score=241.85 Aligned_cols=336 Identities=18% Similarity=0.184 Sum_probs=195.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC-CeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCee----eeccC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIR----VPVSS 183 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~----~~~~~ 183 (644)
+|+|||||++||++|+.|++. | ++|+|+||.+.++. ...|-.+.+.++. ++..++..+.... .....
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~------g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~-~L~~lg~~~~~~~~~~~~~~~~ 73 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH------SHLNVQLFEAAPAFGE-VGAGVSFGANAVR-AIVGLGLGEAYTQVADSTPAPW 73 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc------CCCCEEEEecCCcCCC-CccceeeCccHHH-HHHHcCChhHHHHHhcCCCccC
Confidence 699999999999999999998 8 69999999987653 2234456666553 3333332110000 00000
Q ss_pred CcE--EEeccCCccccCCC-CCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 184 DKF--WFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 184 ~~~--~~~~~~~~~~~~~~-~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
... .+........+... ....+...++|..|.+.|.+.+.. +.++++++|+++..++++ + .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~~-~-~v~~~~------- 142 (414)
T TIGR03219 74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQAEE-V-QVLFTD------- 142 (414)
T ss_pred cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCCc-E-EEEEcC-------
Confidence 111 11111100000000 111223468899999999987643 568899999999877654 3 566655
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eEEEEEEeecC---C----CCCC---CcEE
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDE---G----KHNP---GEIL 329 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~----~~~~---g~~~ 329 (644)
|.++.+|+||+|||.+|.+|+.+....+.. ...+...+ ..+..+..... . .... +...
T Consensus 143 --------g~~~~ad~vVgADG~~S~vR~~l~~~~~~~---~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (414)
T TIGR03219 143 --------GTEYRCDLLIGADGIKSALRDYVLQGQGQA---PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQ 211 (414)
T ss_pred --------CCEEEeeEEEECCCccHHHHHHhcCccCCC---CCCccccCcEEEEEEeeHHHHhhhhccccccccccccce
Confidence 668999999999999999999885322211 11222222 22222221110 0 0000 1111
Q ss_pred EEeccCCCCCCcceEEEEEeCCCeEE-EEEEEccC------CC--CC---CCCcHHHHHHhhc-CCcchhcccCCceee-
Q 006466 330 HTLGWPLDQKTYGGSFLYHMNDRQIA-LGLVVALN------YH--NP---FLNPYEEFQKFKH-HPAIKPLLEGGTVVQ- 395 (644)
Q Consensus 330 h~~g~~~~~~~~g~~~l~~~~~~~~~-ig~~~~~d------~~--~~---~~~~~~~~~~~~~-~p~i~~~l~~~~~i~- 395 (644)
.+++ .+ +..++|+..++... +....... +. .+ .....+..+.|.. +|.++++++......
T Consensus 212 ~~~~----~~--~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~ 285 (414)
T TIGR03219 212 MYLG----LD--GHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTL 285 (414)
T ss_pred EEEc----CC--CeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCCc
Confidence 1111 11 22456777666532 22221110 00 00 1112233344432 355666555322111
Q ss_pred ecceeeecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHHhHH
Q 006466 396 YGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWV 471 (644)
Q Consensus 396 ~~~~~i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~----~~~l~~Ye~~~~~~~~ 471 (644)
+. + .....+++|+.+|++|||||||.|.|+.|||+++||+||..||+.|...... +.+|+.||+.++.+ +
T Consensus 286 ~~---~--~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r-~ 359 (414)
T TIGR03219 286 WA---L--HDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR-A 359 (414)
T ss_pred ee---e--eecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-H
Confidence 11 1 1123467899999999999999999999999999999999999999765321 47899999999975 8
Q ss_pred HHHHHHHhcchhhhh
Q 006466 472 WQELQRARNYRPAFE 486 (644)
Q Consensus 472 ~~~l~~~r~~~~~~~ 486 (644)
.+.++.++.+..+++
T Consensus 360 ~~~~~~s~~~~~~~~ 374 (414)
T TIGR03219 360 CRVQRTSREAGELYE 374 (414)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888777664
No 50
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.94 E-value=5.6e-25 Score=238.36 Aligned_cols=339 Identities=18% Similarity=0.183 Sum_probs=193.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC---c-ccccCccChHHHHHHhhhhhhcCCCeeeec
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA---H-IISGNVFEPRALNELLPQWKQEEAPIRVPV 181 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~---~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~ 181 (644)
+.+||+||||||||+++|+.|+++. ..|++|+||||...... . ...+..+.+.++. ++..++..+.......
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~---~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~~~~~~~ 77 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS---HGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQ-QLARLGVWQALADCAT 77 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc---cCCCEEEEEeCCCcccccCCCCCccceeccHHHHH-HHHHCCChhhhHhhcC
Confidence 3689999999999999999998841 12999999999532211 0 1124455665542 2332222111000001
Q ss_pred cCCcEEEeccCC--ccccCC--CCCCCCcEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 182 SSDKFWFLTKDR--AFSLPS--PFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
....+.+..... ...+.. .......+.+.+..|.+.|.+.+.+ .|++++++++|+++..++++ + .|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~--- 152 (395)
T PRK05732 78 PITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDD--- 152 (395)
T ss_pred CccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECC---
Confidence 111111111100 011110 0011124778999999999998876 47999999999999876543 3 466654
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~ 336 (644)
|..+.+|+||+|||.+|.+++.+ ++........+ ..+.. .+.......+.....+.
T Consensus 153 ------------g~~~~a~~vI~AdG~~S~vr~~~----~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~--- 208 (395)
T PRK05732 153 ------------GETLTGRLLVAADGSHSALREAL----GIDWQQHPYEQ---VAVIA--NVTTSEAHQGRAFERFT--- 208 (395)
T ss_pred ------------CCEEEeCEEEEecCCChhhHHhh----CCCccceecCC---EEEEE--EEEecCCCCCEEEEeec---
Confidence 56799999999999999888765 44321111111 11111 11111111222222221
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCC--CCCCcHHHHHHhhcC-C-cchhcccCCceeeecceeeecCCcccCCcc
Q 006466 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHH-P-AIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~-p-~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~ 412 (644)
. .|..+++|.+++...+.+....+... ...+..+..+.+... + .+..+.+......|. + .....++|
T Consensus 209 -~--~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l---~~~~~~~~ 279 (395)
T PRK05732 209 -E--HGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYP---L---ALVTAAQQ 279 (395)
T ss_pred -C--CCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceec---c---cccchhhh
Confidence 1 13367889888877665543221100 011111222222211 0 001111100111110 1 11133578
Q ss_pred cCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~------~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
..+|++|+|||||.++|+.|||+++||+||..||++|...+.. ..+|+.|+++++.. ....+..++.+..+|.
T Consensus 280 ~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 358 (395)
T PRK05732 280 ISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQD-REATIGFTDGLVRLFA 358 (395)
T ss_pred ccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 8899999999999999999999999999999999999765422 25799999999874 6777788888888775
Q ss_pred c
Q 006466 487 Y 487 (644)
Q Consensus 487 ~ 487 (644)
.
T Consensus 359 ~ 359 (395)
T PRK05732 359 N 359 (395)
T ss_pred C
Confidence 4
No 51
>PRK06126 hypothetical protein; Provisional
Probab=99.94 E-value=1e-24 Score=245.87 Aligned_cols=336 Identities=18% Similarity=0.145 Sum_probs=189.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhc------CCCee
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE------EAPIR 178 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~------~~~~~ 178 (644)
.+.+||+||||||+||++|+.|+++ |++|+||||.+..... ..+..+.++++ +++..|+.. ..+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~------G~~v~viEr~~~~~~~-~ra~~l~~r~~-e~L~~lGl~~~l~~~g~~~~ 76 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR------GVDSILVERKDGTAFN-PKANTTSARSM-EHFRRLGIADEVRSAGLPVD 76 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCCC-CccccCCHHHH-HHHHhcChHHHHHhhcCCcc
Confidence 4568999999999999999999999 9999999998754432 23456777766 444444321 11111
Q ss_pred eeccCCcEEEec-cCC---ccccCCC--------------CCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEE
Q 006466 179 VPVSSDKFWFLT-KDR---AFSLPSP--------------FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEIL 239 (644)
Q Consensus 179 ~~~~~~~~~~~~-~~~---~~~~~~~--------------~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~ 239 (644)
.. ....++.. ... .+.++.. ......+.+++..|.+.|.+.+++. |++|+++++|+++.
T Consensus 77 ~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~ 154 (545)
T PRK06126 77 YP--TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFE 154 (545)
T ss_pred cc--CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEE
Confidence 00 00001100 000 0011100 0111245688999999999999875 79999999999998
Q ss_pred EcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeec
Q 006466 240 YDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID 319 (644)
Q Consensus 240 ~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (644)
.++++ |. |++.+ ..+|+ ..++++|+||+|||.+|.+|+++ ++.. .......+.+.+ ....+
T Consensus 155 ~~~~~-v~-v~~~~---~~~g~-------~~~i~ad~vVgADG~~S~VR~~l----gi~~-~g~~~~~~~~~~--~~~~~ 215 (545)
T PRK06126 155 QDADG-VT-ATVED---LDGGE-------SLTIRADYLVGCDGARSAVRRSL----GISY-EGTSGLQRDLSI--YIRAP 215 (545)
T ss_pred ECCCe-EE-EEEEE---CCCCc-------EEEEEEEEEEecCCcchHHHHhc----CCcc-ccCCCcceEEEE--EEEcC
Confidence 87754 32 44432 01222 25799999999999999999865 4442 111111111111 12221
Q ss_pred CC--CCCCC-cEEEEeccCCCCCCcceEEEEEeCCC-eEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchhcccCC---c
Q 006466 320 EG--KHNPG-EILHTLGWPLDQKTYGGSFLYHMNDR-QIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGG---T 392 (644)
Q Consensus 320 ~~--~~~~g-~~~h~~g~~~~~~~~g~~~l~~~~~~-~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~---~ 392 (644)
.. ..... ...+++.. ++.. .++++..++ ...+. ...........++.+..+.+.. .+... +
T Consensus 216 ~l~~~~~~~~~~~~~~~~---p~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 283 (545)
T PRK06126 216 GLAALVGHDPAWMYWLFN---PDRR--GVLVAIDGRDEWLFH-QLRGGEDEFTIDDVDARAFVRR------GVGEDIDYE 283 (545)
T ss_pred chHHHhcCCCceEEEEEC---CCcc--EEEEEECCCCeEEEE-EecCCCCCCCCCHHHHHHHHHH------hcCCCCCeE
Confidence 10 01111 12232211 2222 345555432 22222 1111111111222222222221 11100 1
Q ss_pred eeeecceeeecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHh
Q 006466 393 VVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKS 469 (644)
Q Consensus 393 ~i~~~~~~i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~---~~~l~~Ye~~~~~~ 469 (644)
...... . .......++|..+||+|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|+++++..
T Consensus 284 i~~~~~--w-~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~ 360 (545)
T PRK06126 284 VLSVVP--W-TGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPI 360 (545)
T ss_pred EEeecc--c-chhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHH
Confidence 111000 0 01122446788899999999999999999999999999999999999876544 46899999999874
Q ss_pred HHHHHHHHHhcchhhh
Q 006466 470 WVWQELQRARNYRPAF 485 (644)
Q Consensus 470 ~~~~~l~~~r~~~~~~ 485 (644)
.......++.....+
T Consensus 361 -~~~~~~~s~~~~~~~ 375 (545)
T PRK06126 361 -AARNTDYARRNADAL 375 (545)
T ss_pred -HHHHHHHHHHHHHHh
Confidence 555555555444333
No 52
>PRK11445 putative oxidoreductase; Provisional
Probab=99.93 E-value=4.2e-23 Score=219.91 Aligned_cols=305 Identities=20% Similarity=0.247 Sum_probs=173.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCC---CcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG---AHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g---~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
|||+||||||||+++|+.|++. ++|+||||.+..+ ....+|+.+.+.++.. +..++... +........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~-L~~lgl~~-~~~~~~~~~ 72 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKS-FAKDGLTL-PKDVIANPQ 72 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCccccccccCcCcCccCHHHHHH-HHHcCCCC-Ccceeeccc
Confidence 7999999999999999999873 7999999998653 2334788888877643 33333211 100000000
Q ss_pred cEEEeccCCccccCCCC---CCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 185 KFWFLTKDRAFSLPSPF---SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 185 ~~~~~~~~~~~~~~~~~---~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
.+.. ..+.+.... .....+.++|..|.++|.+. .+.|+++++++.++++..++++ + .|.+.+ +|+
T Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-----~g~ 140 (351)
T PRK11445 73 IFAV----KTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDG-Y-HVIFRA-----DGW 140 (351)
T ss_pred ccee----eEecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCE-E-EEEEec-----CCc
Confidence 0000 001111000 11123469999999999985 4578999999999999877654 2 354421 121
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~ 341 (644)
..+++||+||+|||.+|.+++++. ... ......++.+.+. .... .+... ..+.... ..
T Consensus 141 -------~~~i~a~~vV~AdG~~S~vr~~l~----~~~-----~~~~~~~~~~~~~-~~~~-~~~~~-~~f~~~~---~~ 198 (351)
T PRK11445 141 -------EQHITARYLVGADGANSMVRRHLY----PDH-----QIRKYVAIQQWFA-EKHP-VPFYS-CIFDNEI---TD 198 (351)
T ss_pred -------EEEEEeCEEEECCCCCcHHhHHhc----CCC-----chhhEEEEEEEec-CCCC-CCCcc-eEEeccC---CC
Confidence 136899999999999999998762 211 1112234333222 2111 11110 0111111 12
Q ss_pred ceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchh-cccCCceeeecceeeecCCcccCCc--ccCCCeE
Q 006466 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPY--PVFPGGA 418 (644)
Q Consensus 342 g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~-~l~~~~~i~~~~~~i~~gg~~~~~~--~~~~~v~ 418 (644)
++.|.+|.++ .+.+|... +...+.+.++.++. .+.. .+..++.+......+... ..+++ +..+|++
T Consensus 199 ~~~W~~p~~~-~~~~g~~~------~~~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vv 267 (351)
T PRK11445 199 CYSWSISKDG-YFIFGGAY------PMKDGRERFETLKE--KLSAFGFQFGKPVKTEACTVLRP--SRWQDFVCGKDNAF 267 (351)
T ss_pred ceEEEeCCCC-cEEecccc------cccchHHHHHHHHH--HHHhcccccccccccccccccCc--ccccccccCCCCEE
Confidence 4578888855 44454222 11122222222211 0000 000111111100001110 01122 3358999
Q ss_pred EEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Q 006466 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQK 468 (644)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~~~l~~Ye~~~~~ 468 (644)
|||||||+++|++|+|++.||+||..||++|.+.. ...++.|++.++.
T Consensus 268 lVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--~~~~~~y~~~~~~ 315 (351)
T PRK11445 268 LIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--EKLNTAYWRKTRK 315 (351)
T ss_pred EEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 99999999999999999999999999999998765 4578999998886
No 53
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.92 E-value=5.2e-23 Score=230.40 Aligned_cols=339 Identities=15% Similarity=0.053 Sum_probs=185.4
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC-CCCcc--cccCccChHHHHHHhhhhhh--cCCCee
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHI--ISGNVFEPRALNELLPQWKQ--EEAPIR 178 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~~--~~g~~i~~~~l~~l~~~~~~--~~~~~~ 178 (644)
+....+|+||||||+||++|+.|++. |++|+|+||.+. ..+.. ..+..+.++++. .+..++. ......
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~------Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~-aLe~LGl~~~e~l~~ 150 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK------GFDVLVFEKDLSAIRGEGKYRGPIQIQSNALA-ALEAIDIDVAEQVME 150 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc------CCeEEEEeccccccccccccCcccccCHHHHH-HHHHcCcchHHHHHh
Confidence 34568999999999999999999999 999999999762 11111 113446666653 2222221 000000
Q ss_pred ee-ccCCcE-EEecc-CCc--cccCC--CCC---CCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEE
Q 006466 179 VP-VSSDKF-WFLTK-DRA--FSLPS--PFS---NRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG 248 (644)
Q Consensus 179 ~~-~~~~~~-~~~~~-~~~--~~~~~--~~~---~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~g 248 (644)
.. .....+ .+.+. ... ..++. ... ....+.++|..|.+.|.+.+.. ..++++++|+++..+++ .| .
T Consensus 151 ~g~~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d-~V-t 226 (668)
T PLN02927 151 AGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGD-KV-T 226 (668)
T ss_pred hcCcccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCC-EE-E
Confidence 00 000111 11111 000 11111 001 1124689999999999765422 23678999999987664 34 3
Q ss_pred EEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eEEEEEEeecCCCCCCCc
Q 006466 249 IGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGE 327 (644)
Q Consensus 249 V~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~ 327 (644)
|.+.+ |.++.+|+||+|||.+|.+|+.+. +... +...+ ..+..+....+.......
T Consensus 227 V~~~d---------------G~ti~aDlVVGADG~~S~vR~~l~---g~~~-----~~~sG~~~~rgi~~~~p~~~~~~~ 283 (668)
T PLN02927 227 VVLEN---------------GQRYEGDLLVGADGIWSKVRNNLF---GRSE-----ATYSGYTCYTGIADFIPADIESVG 283 (668)
T ss_pred EEECC---------------CCEEEcCEEEECCCCCcHHHHHhc---CCCC-----CcccceEEEEEEcCCCcccccccc
Confidence 66655 667999999999999999999873 3321 11111 122212121111100000
Q ss_pred EEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCC---CCCCCcHHHHHHhhc-CCcchhcccCCceeeecceeeec
Q 006466 328 ILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH---NPFLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNE 403 (644)
Q Consensus 328 ~~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~---~~~~~~~~~~~~~~~-~p~i~~~l~~~~~i~~~~~~i~~ 403 (644)
...+.+ ... ....++..++.+.+-........ .+.....+..+.+.. .+.+.++++.........+.+
T Consensus 284 ~~~~~G----~~~--~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~i-- 355 (668)
T PLN02927 284 YRVFLG----HKQ--YFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDI-- 355 (668)
T ss_pred eEEEEc----CCe--EEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeE--
Confidence 111111 111 11223444444433222111100 010111222233332 345555554221100000011
Q ss_pred CCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC----------CchHHHHHHHHHHhHHHH
Q 006466 404 GGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----------DSNMEIYWDTLQKSWVWQ 473 (644)
Q Consensus 404 gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~----------~~~l~~Ye~~~~~~~~~~ 473 (644)
......++|..+|++|+|||||.|.|..|||+++||+||..||.+|.++... ..+|+.||++++.+ +.+
T Consensus 356 yd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~r-v~~ 434 (668)
T PLN02927 356 YDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLR-VAI 434 (668)
T ss_pred EeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHH-HHH
Confidence 1122445799999999999999999999999999999999999999876421 36899999999875 666
Q ss_pred HHHHHhcchhhh
Q 006466 474 ELQRARNYRPAF 485 (644)
Q Consensus 474 ~l~~~r~~~~~~ 485 (644)
.+..++....++
T Consensus 435 i~~~ar~a~~~~ 446 (668)
T PLN02927 435 IHAMARMAAIMA 446 (668)
T ss_pred HHHHHHHHHHHH
Confidence 666656555544
No 54
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.92 E-value=4.4e-22 Score=215.24 Aligned_cols=305 Identities=17% Similarity=0.141 Sum_probs=175.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHh-hhhhhcCCCeeeeccCCcEE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL-PQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~ 187 (644)
|||||||||||+++|+.|++. |++|+|||+.+.+++... ..+....+.++- ..... ........
T Consensus 1 DviIiGaG~AGl~~A~~la~~------g~~v~liE~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 65 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPGNHT--YGVWDDDLSDLGLADCVE-------HVWPDVYE 65 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCCCcc--ccccHhhhhhhchhhHHh-------hcCCCceE
Confidence 899999999999999999998 999999999987664321 112122221110 00000 00000011
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
+........+ ......+++..|.+.|.+++.+.|++++ ...|+++..++++ .+.|++.+
T Consensus 66 ~~~~~~~~~~-----~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~-------------- 124 (388)
T TIGR01790 66 YRFPKQPRKL-----GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAG-------------- 124 (388)
T ss_pred EecCCcchhc-----CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCC--------------
Confidence 1111111111 1223458999999999999999999997 4578888766333 44577655
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCC------Cc
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK------TY 341 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~------~~ 341 (644)
|.+++|++||+|+|.+|.+++.. .+.. .......|+. ++++...+.++.. ..+.+..... ..
T Consensus 125 -g~~~~a~~VI~A~G~~s~~~~~~---~~~~-----~~~q~~~G~~--~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~ 192 (388)
T TIGR01790 125 -GQRIQARLVIDARGFGPLVQYVR---FPLN-----VGFQVAYGVE--ARLSRPPHGPSSM-VIMDARVDQLAAPELKGY 192 (388)
T ss_pred -CCEEEeCEEEECCCCchhccccc---CCCC-----ceEEEEEEEE--EEEcCCCCCCCce-EEEeccccccccccccCC
Confidence 56899999999999998543211 1111 1111223332 3333322223321 2233322110 12
Q ss_pred c--eEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHH-HhhcCCcchh-cccCCceeeecceeeecCCcccCCcccCCCe
Q 006466 342 G--GSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ-KFKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (644)
Q Consensus 342 g--~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~-~~~~~p~i~~-~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v 417 (644)
+ ..|++|.+++.+.++...... .+... .+.+. .+.. .++. -+...+.+......+|.++.. ++..+|+
T Consensus 193 ~~~f~~~lP~~~~~~~v~~~~~~~--~~~~~-~~~~~~~l~~--~~~~~g~~~~~i~~~~~~~iP~~~~~---~~~~~rv 264 (388)
T TIGR01790 193 RPTFLYAMPLGSTRVFIEETSLAD--RPALP-RDRLRQRILA--RLNAQGWQIKTIEEEEWGALPVGLPG---PFLPQRV 264 (388)
T ss_pred CCceEEEeecCCCeEEEEeccccC--CCCCC-HHHHHHHHHH--HHHHcCCeeeEEEeeeeEEEecccCC---CccCCCe
Confidence 2 478889988888776432111 12222 22222 2211 0000 011112222222345554432 2377899
Q ss_pred EEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHHh
Q 006466 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKS 469 (644)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~--~~~l~~Ye~~~~~~ 469 (644)
++||||||+++|.+|+|++.|+++|..+|++|.+++.. ...++.|++.++..
T Consensus 265 ~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (388)
T TIGR01790 265 AAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTE 318 (388)
T ss_pred eeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHH
Confidence 99999999999999999999999999999999988754 35678887666543
No 55
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.91 E-value=1.6e-25 Score=181.63 Aligned_cols=81 Identities=30% Similarity=0.642 Sum_probs=74.8
Q ss_pred CCcCCCCCCCcEEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCC-CCce
Q 006466 551 NTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPK-QNIK 629 (644)
Q Consensus 551 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~-~~i~ 629 (644)
|.++++.+.+||.++|+..|.+|+ ++||+.+|||+||++.++. ++.|+|++||||| ||||.||+ .+|.
T Consensus 16 n~~~vDe~~pHI~v~~~~~~~~~~----~~~l~~aCPA~~Y~~~~~g----~l~~~yegClECG---TCRvlc~~~~~i~ 84 (99)
T COG2440 16 NRYNVDEDHPHIIVKDPDDCQECE----DKPLIKACPAGCYKLIDDG----KLRFDYEGCLECG---TCRVLCPHSGLIQ 84 (99)
T ss_pred heeeccCCCCcEecCCchhhhhcc----chhhhhcCCHHHeeECCCC----cEEEeecCeeecc---ceeEecCCCcceE
Confidence 446777788999999999999998 8999999999999998743 8999999999999 99999998 9999
Q ss_pred eeCCCCCCCCCcC
Q 006466 630 WTVPEGGGGPGYS 642 (644)
Q Consensus 630 w~~p~gg~g~~~~ 642 (644)
|+||+||+||.|+
T Consensus 85 W~YPrgg~GI~yr 97 (99)
T COG2440 85 WRYPRGGFGITYR 97 (99)
T ss_pred EecCCCCcCEEEe
Confidence 9999999999997
No 56
>PLN02697 lycopene epsilon cyclase
Probab=99.90 E-value=2.8e-21 Score=213.24 Aligned_cols=319 Identities=16% Similarity=0.140 Sum_probs=186.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
..+||+||||||||+++|+.|++. |++|+|||+....... ..+....+.++ ..... +.. .....
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~------Gl~V~LIe~~~p~~~n----~GvW~~~l~~l----gl~~~-i~~-~w~~~ 170 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNN----YGVWEDEFKDL----GLEDC-IEH-VWRDT 170 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEecCcccCCCc----cccchhHHHhc----CcHHH-HHh-hcCCc
Confidence 458999999999999999999999 9999999986443221 11222222111 10000 000 00111
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
..+........+ ......++|..|.+.|.+++.+.|+++ .+.+|+++..++++ +..|.+.+
T Consensus 171 ~v~~~~~~~~~~-----~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~d------------ 231 (529)
T PLN02697 171 IVYLDDDKPIMI-----GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACED------------ 231 (529)
T ss_pred EEEecCCceeec-----cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcC------------
Confidence 111111111111 111225899999999999999999998 57789998876644 33344444
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccC---------C
Q 006466 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP---------L 336 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~---------~ 336 (644)
|.++.|++||+|+|.+|. +.+ +........+.....|+. +++....+.++.. .+++|. .
T Consensus 232 ---G~~i~A~lVI~AdG~~S~--rl~----~~~~~~~~~~~Q~a~Gi~--ve~~~~~~d~~~~-vlMD~r~~~~~~~~~~ 299 (529)
T PLN02697 232 ---GRVIPCRLATVASGAASG--RLL----QYEVGGPRVCVQTAYGVE--VEVENNPYDPSLM-VFMDYRDYFKEKVSHL 299 (529)
T ss_pred ---CcEEECCEEEECCCcChh--hhh----ccccCCCCcccEEEEEEE--EEecCCCCCcchh-eeeccccccccccccc
Confidence 568999999999999983 211 111000011122333333 3343333334432 233322 1
Q ss_pred CCCCcceEEEEEeCCCeEEE-EEEEccCCCCCCCCcHH---HHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcc
Q 006466 337 DQKTYGGSFLYHMNDRQIAL-GLVVALNYHNPFLNPYE---EFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~i-g~~~~~d~~~~~~~~~~---~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~ 412 (644)
..+.++..|++|.+++++.| +..... .+.+.... .++.+..+..+ ...+.++.....||.++. +|..
T Consensus 300 ~~~~p~FlYvlP~~~~~~~VE~T~l~~---~~~l~~~~l~~~L~~~l~~~Gi----~~~~i~~~E~g~iPm~g~--~~~~ 370 (529)
T PLN02697 300 EAEYPTFLYAMPMSSTRVFFEETCLAS---KDAMPFDLLKKRLMSRLETMGI----RILKTYEEEWSYIPVGGS--LPNT 370 (529)
T ss_pred cCCCceEEEEeecCCCeEEEEEeeecc---CCCCCHHHHHHHHHHHHHhCCC----CcceEEEEEeeeecCCCC--Cccc
Confidence 12234457888999999888 543211 12222121 22222222222 123344444446777663 3444
Q ss_pred cCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccCC-------------chHHHHHHHHHHhHHHHHHHHHh
Q 006466 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------------SNMEIYWDTLQKSWVWQELQRAR 479 (644)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~~-------------~~l~~Ye~~~~~~~~~~~l~~~r 479 (644)
.++++++||||++++|.+|.|+..+|.+|..+|++|++++..+ ..++.|++.|... .+++.....
T Consensus 371 -~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e-~~r~~~~~~ 448 (529)
T PLN02697 371 -EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE-RKRQRAFFL 448 (529)
T ss_pred -CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH-HHHHHHHHH
Confidence 6799999999999999999999999999999999999988643 2467888887764 444444443
Q ss_pred cch
Q 006466 480 NYR 482 (644)
Q Consensus 480 ~~~ 482 (644)
..+
T Consensus 449 ~g~ 451 (529)
T PLN02697 449 FGL 451 (529)
T ss_pred HHH
Confidence 333
No 57
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=214.22 Aligned_cols=300 Identities=18% Similarity=0.162 Sum_probs=147.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccC--h---HHHHHHh--hhhhhcCCCeee
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE--P---RALNELL--PQWKQEEAPIRV 179 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~--~---~~l~~l~--~~~~~~~~~~~~ 179 (644)
+.+|||||||++||++|+.|+|+ |++|+|+|++..+.+. |..+. . ++++.+- +.......|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~------G~~v~VlE~~e~~R~~---g~si~L~~ng~~aLkai~~~e~i~~~gip~~~ 72 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK------GIDVVVLESREDPRGE---GTSINLALNGWRALKAIGLKEQIREQGIPLGG 72 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc------CCeEEEEeeccccccC---CcceeehhhHHHHHHHcccHHHHHHhcCcccc
Confidence 35899999999999999999999 9999999998877653 32222 1 2222221 222222333321
Q ss_pred eccCCcEEEe-ccCCccccCCCCCCCCcE--EEcHHHHHHHHHHHHHhcCCEEecCc------eEEEEEEcCCCcEEEEE
Q 006466 180 PVSSDKFWFL-TKDRAFSLPSPFSNRGNY--VISLSQLVRWLGGKAEELGVEIYPGF------AASEILYDADNKVIGIG 250 (644)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~v~r~~l~~~L~~~a~~~Gv~i~~g~------~v~~v~~~~~g~v~gV~ 250 (644)
.+ +..- ++.....++. .....| .+.|..+...+...|+.. -+|.+++ .+..++.-... ..|.
T Consensus 73 ~v----~~~~~sg~~~~~~~~--~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~--~~v~ 143 (420)
T KOG2614|consen 73 RV----LIHGDSGKEVSRILY--GEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKK--LVVH 143 (420)
T ss_pred ee----eeecCCCCeeEeccc--CCchHHHHHHHHHHHHHHHHHhhcCC-Ceeecccccccccccceeeecccc--ccee
Confidence 11 0000 0111111221 122223 233444444444444443 3344443 23223222212 2255
Q ss_pred eCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcE--
Q 006466 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI-- 328 (644)
Q Consensus 251 ~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~-- 328 (644)
+.| |.++++|++|+|||++|.+|+.|..+. +. ..+...+..+-.++........+
T Consensus 144 l~~---------------g~~~~~dlligCDGa~S~Vr~~l~~~~-p~-------~~~~~ayrg~~~~~~~~~~~~~vf~ 200 (420)
T KOG2614|consen 144 LSD---------------GTTVKGDLLIGCDGAYSKVRKWLGFKE-PR-------YDGSQAYRGLGFIPNGIPFGKKVFA 200 (420)
T ss_pred cCC---------------CcEEEeeEEEEcCchHHHHHHHhcccC-Cc-------ceeEEEEeeeeeccCCCCcccceec
Confidence 554 789999999999999999999883221 11 12222333333333222111111
Q ss_pred ---EEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCC---CcHHHHHHhhc-CCcchhcccCCceeeecceee
Q 006466 329 ---LHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFL---NPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTL 401 (644)
Q Consensus 329 ---~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~---~~~~~~~~~~~-~p~i~~~l~~~~~i~~~~~~i 401 (644)
-+..-|+..... ...|.+-+........... .++.. .+.+..+.|.+ .|.+-+++......... +
T Consensus 201 ~~~~~~~~~~~~~~~---~~~y~~~~k~~t~t~~~~~--~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~---l 272 (420)
T KOG2614|consen 201 IYGNGLHSWPRPGFH---LIAYWFLDKSLTSTDFAPF--DEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTP---L 272 (420)
T ss_pred ccCCeEEEcccCCce---EEEEEeecCCcccccccCc--CCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhch---h
Confidence 111223322211 1223322222222211111 11111 12223333321 12222222211111000 0
Q ss_pred e-cCCc-ccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC
Q 006466 402 N-EGGL-QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (644)
Q Consensus 402 ~-~gg~-~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~ 455 (644)
. ...+ ....+....+++|+|||||+|.|+.|||+++||+|+.+||+.|.++..+
T Consensus 273 ~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d 328 (420)
T KOG2614|consen 273 ADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND 328 (420)
T ss_pred hhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc
Confidence 0 0000 0112445569999999999999999999999999999999999998774
No 58
>PLN02463 lycopene beta cyclase
Probab=99.90 E-value=1.7e-21 Score=211.95 Aligned_cols=292 Identities=18% Similarity=0.206 Sum_probs=170.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
..+||+||||||||+++|+.|++. |++|+|||+.+...... ...+....+.++ +..+. +.. .....
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~------Gl~V~liE~~~~~~~p~--~~g~w~~~l~~l----gl~~~-l~~-~w~~~ 92 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA------GLSVCCIDPSPLSIWPN--NYGVWVDEFEAL----GLLDC-LDT-TWPGA 92 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC------CCeEEEeccCccchhcc--ccchHHHHHHHC----CcHHH-HHh-hCCCc
Confidence 358999999999999999999998 99999999986533211 111111111111 00000 000 00111
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
..+..+...... ......++|..|.+.|.+++.+.|++++ ..+|+++..++++ +.|++.+
T Consensus 93 ~v~~~~~~~~~~-----~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~d------------ 152 (447)
T PLN02463 93 VVYIDDGKKKDL-----DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDD------------ 152 (447)
T ss_pred EEEEeCCCCccc-----cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECC------------
Confidence 111111111111 1223458999999999999999999997 4689999877643 3577765
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccC----------
Q 006466 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP---------- 335 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~---------- 335 (644)
|.+++||+||+|+|.+|.+.+. ... .........|+ ..++.......+.. ..+.|.
T Consensus 153 ---G~~i~A~lVI~AdG~~s~l~~~-----~~~---~~~g~Q~a~Gi--~~ev~~~p~d~~~~-vlMD~r~~~~~~~~~~ 218 (447)
T PLN02463 153 ---GVKIQASLVLDATGFSRCLVQY-----DKP---FNPGYQVAYGI--LAEVDSHPFDLDKM-LFMDWRDSHLGNNPEL 218 (447)
T ss_pred ---CCEEEcCEEEECcCCCcCccCC-----CCC---CCccceeeeeE--EeecCCCCcccccc-hhhhcChhhccccchh
Confidence 6689999999999999876431 111 01111122232 22333222222221 112221
Q ss_pred --CCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHH-Hhh---cCCcchhcccCCceeeecceeeecCCcccC
Q 006466 336 --LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ-KFK---HHPAIKPLLEGGTVVQYGARTLNEGGLQSI 409 (644)
Q Consensus 336 --~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~-~~~---~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~ 409 (644)
.+....+..|++|.+++++.++...-. ..+.+. .+.++ ++. .+..+ +..+..+.....||.++..
T Consensus 219 ~~~~~~~p~FlY~~P~~~~~~~vEeT~l~--s~~~~~-~~~lk~~L~~~l~~~Gi----~~~~i~~~E~~~IPmg~~~-- 289 (447)
T PLN02463 219 RARNSKLPTFLYAMPFSSNRIFLEETSLV--ARPGLP-MDDIQERMVARLRHLGI----KVKSVEEDEKCVIPMGGPL-- 289 (447)
T ss_pred hhccCCCCceEEEEecCCCeEEEEeeeee--cCCCCC-HHHHHHHHHHHHHHCCC----CcceeeeeeeeEeeCCCCC--
Confidence 111113347888999988877754211 112222 22222 222 12111 1122333333357777653
Q ss_pred CcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC
Q 006466 410 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (644)
Q Consensus 410 ~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~ 455 (644)
| ...++++++||||++++|.+|.|+..++.+|..+|++|.+++..
T Consensus 290 ~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 290 P-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred C-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 2 34579999999999999999999999999999999999998875
No 59
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.88 E-value=1.2e-21 Score=227.60 Aligned_cols=321 Identities=18% Similarity=0.154 Sum_probs=177.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhc-CCCee-eeccCCcE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE-EAPIR-VPVSSDKF 186 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~-~~~~~-~~~~~~~~ 186 (644)
+|+|||||||||++|+.|++. ++|++|+|+||.+... ....|..+.+..+..+ ..+... ...+. .....+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L-~~~~~~~~~~~~~~~~~~~~~ 75 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATLGNL-RAADPVSAAAIGDAFNHWDDI 75 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHHHHH-HhcCHHHHHHHHHhcccCCce
Confidence 699999999999999999997 3479999999998642 1223445566554332 222110 00000 00011112
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
.+........ ........++|..|.+.|.+++++.||+|+++++++++..
T Consensus 76 ~~~~~g~~~~----~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------------- 125 (765)
T PRK08255 76 DVHFKGRRIR----SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------------------- 125 (765)
T ss_pred EEEECCEEEE----ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--------------------------
Confidence 2211111110 0111123589999999999999999999999998754310
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 006466 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~~l 346 (644)
..+.+|+||+|||.+|.+|+++...++... ......| .|.-... ....... ...+...+.+ ..+.
T Consensus 126 ---~~~~~D~VVgADG~~S~vR~~~~~~~~~~~--~~~~~~~------~w~g~~~-~~~~~~~--~~~~~~~g~~-~~~~ 190 (765)
T PRK08255 126 ---LAADADLVIASDGLNSRIRTRYADTFQPDI--DTRRCRF------VWLGTHK-VFDAFTF--AFEETEHGWF-QAHA 190 (765)
T ss_pred ---hhcCCCEEEEcCCCCHHHHHHHHhhcCCce--ecCCCce------EEecCCC-cccceeE--EEEecCCceE-EEEE
Confidence 124799999999999999998765555432 1111111 1111100 0000000 0000111100 1223
Q ss_pred EEeCCCeEEEEEEEccC-CC---CCCCCcHHHHHHh----hcCCcchhcccCCce---eeecceeeecCCcccCCcccCC
Q 006466 347 YHMNDRQIALGLVVALN-YH---NPFLNPYEEFQKF----KHHPAIKPLLEGGTV---VQYGARTLNEGGLQSIPYPVFP 415 (644)
Q Consensus 347 ~~~~~~~~~ig~~~~~d-~~---~~~~~~~~~~~~~----~~~p~i~~~l~~~~~---i~~~~~~i~~gg~~~~~~~~~~ 415 (644)
|+..++...+-+....+ +. .+..+..+..+.+ ........++..... ..|. .+. ...+++|+.+
T Consensus 191 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~--~~~---~~~~~~w~~g 265 (765)
T PRK08255 191 YRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWI--NFP---RVVCERWVHW 265 (765)
T ss_pred eeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceee--ecc---eeccCCCccC
Confidence 55544433222222111 00 0111222222222 211111122221110 0111 011 1134688888
Q ss_pred C----eEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhcccc-CCchHHHHHHHHHHhHHHHHHHHHhcchhhhh
Q 006466 416 G----GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (644)
Q Consensus 416 ~----v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~-~~~~l~~Ye~~~~~~~~~~~l~~~r~~~~~~~ 486 (644)
+ ++|+|||||.++|..|||+++||+||..||++|..... ...+|+.|++.++.+ +.+..+.++....+|.
T Consensus 266 r~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R~~r-~~~~~~~s~~~~~~~~ 340 (765)
T PRK08255 266 NRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHPGDLPAALAAYEEERRVE-VLRIQNAARNSTEWFE 340 (765)
T ss_pred CCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH-HHHHHHHHHHhCceee
Confidence 8 99999999999999999999999999999999987542 257899999999976 7777888887666663
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.86 E-value=3.7e-20 Score=202.65 Aligned_cols=223 Identities=18% Similarity=0.212 Sum_probs=136.3
Q ss_pred CcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 205 GNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 205 ~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
..|.++|..|.+.|.+.|++.||+++.++ |+++..+++|.|..|++.+ |.+++||+||+|+|.+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence 37899999999999999999999999885 8888888889898999877 7899999999999999
Q ss_pred CcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCC-CCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccC
Q 006466 285 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 363 (644)
Q Consensus 285 s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~g~~~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d 363 (644)
+.+.+++ ++... .........-......++... ..+.+..+.+ ..|..|.+|+.++..+ |++...+
T Consensus 211 s~L~~~~---L~~~~--~~~~~~L~~d~av~~~~~~~~~~~~~T~~~a~-------~~GW~W~IPL~~~~~~-G~V~s~~ 277 (454)
T PF04820_consen 211 SLLARKA---LKVGF--RDWSDWLPNDRAVAVQVPNEDPPEPYTRSTAF-------EAGWIWYIPLQNRRGS-GYVYSSD 277 (454)
T ss_dssp -CCCCCC---T-EEE--EEETTTCEEEEEEEEEEE-SSCTTSSEEEEEE-------SSEEEEEEEESSEEEE-EEEEETT
T ss_pred chhhHhh---hcCCC--ccccccccccEEEEEecCcCCCCCCceeEEec-------CCceEEEccCCCcceE-EEEeccc
Confidence 8877642 11111 000111100000111222222 2222222222 2255789999886655 8887654
Q ss_pred CCCCCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHH
Q 006466 364 YHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 443 (644)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~ 443 (644)
+ .++.+.++.+..+-....... ...+... .+. ..+...+|+++|||||++++|+.+.|+++|+.++.
T Consensus 278 ~----~s~~~A~~~l~~~l~~~~~~~-~~~i~~~-----~g~---~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~ 344 (454)
T PF04820_consen 278 F----ISDDEAEAELLAYLGGSPEAE-PRHIRFR-----SGR---RKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAE 344 (454)
T ss_dssp T----SHHHHHHHHHHHHHTCHCTTS-CEEEE-S------EE---ESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHH
T ss_pred c----CCHHHHHHHHHHhcchhhhcc-hhhhccc-----ccc---hhhcccCCEEEEcchhhccCccccccHHHHHHHHH
Confidence 4 344444444432111111111 1222211 111 23567789999999999999999999999999888
Q ss_pred HHHHHHhccccCCchHHHHHHHHHHh
Q 006466 444 LAAEAGFGVLHEDSNMEIYWDTLQKS 469 (644)
Q Consensus 444 ~lA~~l~~~l~~~~~l~~Ye~~~~~~ 469 (644)
.+++.|......+..++.|++.++..
T Consensus 345 ~l~~~l~~~~~~~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 345 ALAEALPDDDFSPAALDRYNRRMRRE 370 (454)
T ss_dssp HHHHTHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 88887776544456788898888764
No 61
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.79 E-value=5.6e-18 Score=170.95 Aligned_cols=303 Identities=22% Similarity=0.282 Sum_probs=178.2
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCC---eeeec
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAP---IRVPV 181 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~---~~~~~ 181 (644)
...+||||||||.+|.++|+.|+|. |.+|.||||.-.-...+ -|..+.|.....| .+++..+.. -...+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kd------GRrVhVIERDl~EPdRi-vGEllQPGG~~~L-~~LGl~Dcve~IDAQ~v 114 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKD------GRRVHVIERDLSEPDRI-VGELLQPGGYLAL-SKLGLEDCVEGIDAQRV 114 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhC------CcEEEEEecccccchHH-HHHhcCcchhHHH-HHhCHHHHhhcccceEe
Confidence 4468999999999999999999999 99999999974332222 2445555443222 112211111 11122
Q ss_pred cCCcEEEeccCCccccCCCCCCC----CcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 182 SSDKFWFLTKDRAFSLPSPFSNR----GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
. ++....+....++|.+..+. .+...+-++|.+-|++.|... +|++..|+ |.++.+++ |.|.||+.++
T Consensus 115 ~--Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~-gvvkGV~yk~--- 187 (509)
T KOG1298|consen 115 T--GYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEE-GVVKGVTYKN--- 187 (509)
T ss_pred e--eeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhcc-CeEEeEEEec---
Confidence 2 22233345555555443322 245567899999999998775 58888775 88887766 7899999987
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~ 336 (644)
+.|+ ..+..|-++|+|||++|.+|+.|.+ .. ...-..+-+|+.. +.. ....++...-.++-|
T Consensus 188 -k~ge-------e~~~~ApLTvVCDGcfSnlRrsL~~---~~---v~~V~S~fVG~vl--~N~-~l~~p~hghvIL~~p- 249 (509)
T KOG1298|consen 188 -KEGE-------EVEAFAPLTVVCDGCFSNLRRSLCD---PK---VEEVPSYFVGLVL--KNC-RLPAPNHGHVILSKP- 249 (509)
T ss_pred -CCCc-------eEEEecceEEEecchhHHHHHHhcC---Cc---ccccchheeeeee--cCC-CCCCCCcceEEecCC-
Confidence 4554 2678899999999999999998732 11 1112234445431 111 111222211122211
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhc--CCcchhcccCCceeeecceeeecCCccc-----C
Q 006466 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQS-----I 409 (644)
Q Consensus 337 ~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~i~~~~~~i~~gg~~~-----~ 409 (644)
.+ ..+|++....+.+.+-+..+ .-|....-|+-..+++ .|.+-+.++.. .+ ..+.+|.+++ +
T Consensus 250 ---sp--il~Y~ISStEvRcl~~v~g~-~~Psi~~gem~~~mk~~v~PqiP~~lR~~-F~----~av~~g~irsmpn~~m 318 (509)
T KOG1298|consen 250 ---SP--ILVYQISSTEVRCLVDVPGQ-KLPSIANGEMATYMKESVAPQIPEKLRES-FL----EAVDEGNIRSMPNSSM 318 (509)
T ss_pred ---Cc--EEEEEecchheEEEEecCcc-cCCcccchhHHHHHHHhhCcCCCHHHHHH-HH----HHhhccchhcCccccC
Confidence 22 56888877777766554332 1122222222122221 23332222100 00 0112222222 2
Q ss_pred C--cccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhc
Q 006466 410 P--YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (644)
Q Consensus 410 ~--~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~ 451 (644)
| ....+|++|+|||..+=+|++|.||..|+.|..++-+.|..
T Consensus 319 pa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 319 PATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred CCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcc
Confidence 2 23457999999999999999999999999999999988765
No 62
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.79 E-value=1.8e-20 Score=155.37 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=67.0
Q ss_pred cCCcCCCCCCCcEEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCC-Cc
Q 006466 550 SNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQ-NI 628 (644)
Q Consensus 550 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~-~i 628 (644)
.++++.+++.+||.|++.. ..|. .++|+.+|||++|+..++ | .+.||+++|++|| +|++.||.. +|
T Consensus 13 ~~~y~vd~~~~HI~i~~~~--~~~~----~k~C~~aCPagA~~~~e~--G--~V~vd~e~CigCg---~C~~~C~~~~~~ 79 (95)
T PRK15449 13 VNKFNVDEEHPHIVVKADA--DKQA----LELLVKACPAGLYKKQDD--G--SVRFDYAGCLECG---TCRILGLGSALE 79 (95)
T ss_pred cceeECCCCCCcEEEcCCC--Cchh----hhHHHHHCCHhhcEeCCC--C--CEEEcCCCCCcch---hhhhhcCCCCcc
Confidence 3555667788999998754 3455 789999999999986433 2 7999999999999 999999876 46
Q ss_pred eeeCCCCCCCCCcC
Q 006466 629 KWTVPEGGGGPGYS 642 (644)
Q Consensus 629 ~w~~p~gg~g~~~~ 642 (644)
+|+||+||+||.|+
T Consensus 80 ~W~yPrgg~GV~yr 93 (95)
T PRK15449 80 QWEYPRGTFGVEFR 93 (95)
T ss_pred CccCCCCCcCEEEe
Confidence 99999999999997
No 63
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.79 E-value=6e-17 Score=173.87 Aligned_cols=279 Identities=19% Similarity=0.190 Sum_probs=163.8
Q ss_pred cEEEECCCHHHHHHHHHH--HhhchhcCCCCeEEEEcCCCCCCCcccccCccChHH---HHHHhh-hhhhcCCCeeeecc
Q 006466 109 DVVIVGAGPAGLSAAIRL--KQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA---LNELLP-QWKQEEAPIRVPVS 182 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~L--a~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~---l~~l~~-~~~~~~~~~~~~~~ 182 (644)
|||||||||||+++|..| ++. |.+|+|||+.+..+.......++.... +.+++. .|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~------g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~----------- 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP------GLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWS----------- 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC------CCEEEEEcCCccccccCCcccccccccccchHHHHheecC-----------
Confidence 899999999999999999 555 999999999887632211122222211 112211 111
Q ss_pred CCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCc
Q 006466 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (644)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~ 262 (644)
...+.......... ......|++..|.+.|.+++.+. ..++.+..|++|..++++ +.|++.+
T Consensus 64 --~~~v~~~~~~~~~~----~~~Y~~i~~~~f~~~l~~~~~~~-~~~~~~~~V~~i~~~~~~--~~v~~~~--------- 125 (374)
T PF05834_consen 64 --GWRVYFPDGSRILI----DYPYCMIDRADFYEFLLERAAAG-GVIRLNARVTSIEETGDG--VLVVLAD--------- 125 (374)
T ss_pred --ceEEEeCCCceEEc----ccceEEEEHHHHHHHHHHHhhhC-CeEEEccEEEEEEecCce--EEEEECC---------
Confidence 11111111111111 12244799999999999999944 456678899999887753 3467665
Q ss_pred ccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCC--C
Q 006466 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK--T 340 (644)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~--~ 340 (644)
|.+++|++||+|+|..+...+. .......|+. +++....+.++. ...|.|...+. .
T Consensus 126 ------g~~i~a~~VvDa~g~~~~~~~~-------------~~~Q~f~G~~--v~~~~~~f~~~~-~~lMD~r~~~~~~~ 183 (374)
T PF05834_consen 126 ------GRTIRARVVVDARGPSSPKARP-------------LGLQHFYGWE--VETDEPVFDPDT-ATLMDFRVPQSADG 183 (374)
T ss_pred ------CCEEEeeEEEECCCcccccccc-------------cccceeEEEE--EeccCCCCCCCc-eEEEEecccCCCCC
Confidence 6789999999999966541111 1112233432 233333333433 34455554433 3
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCCCcHHHHHHhhcCCcchh-cccCCceeeecceeeec--CCcccCCcccCCCe
Q 006466 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNE--GGLQSIPYPVFPGG 417 (644)
Q Consensus 341 ~g~~~l~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~-~l~~~~~i~~~~~~i~~--gg~~~~~~~~~~~v 417 (644)
+...|++|..++++.|....-.. .+.+...+..+++... ++. -++..+.++.....||. ++. ++...+++
T Consensus 184 ~~F~Y~lP~~~~~alvE~T~fs~--~~~~~~~~~~~~l~~~--l~~~g~~~~~i~~~E~G~IPm~~~~~---~~~~~~~v 256 (374)
T PF05834_consen 184 PSFLYVLPFSEDRALVEETSFSP--RPALPEEELKARLRRY--LERLGIDDYEILEEERGVIPMTTGGF---PPRFGQRV 256 (374)
T ss_pred ceEEEEEEcCCCeEEEEEEEEcC--CCCCCHHHHHHHHHHH--HHHcCCCceeEEEeecceeecccCCC---ccccCCCe
Confidence 33356778888888887554322 2212222222222211 111 11112233322234665 222 24455679
Q ss_pred EEEccCCcccCCCCCcchHHHHHHHHHHHHHHhc
Q 006466 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (644)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~ 451 (644)
+.+|+|+|+++|.+|.++..+++.+..+|++|.+
T Consensus 257 ~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 257 IRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred eeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988888876
No 64
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.78 E-value=1.9e-16 Score=169.34 Aligned_cols=295 Identities=20% Similarity=0.191 Sum_probs=156.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc-ccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
||+|||||+||+++|+.|++. .+|++|+|+|+.+.+++. +.+ +....+.+....+-. ..+.. .-....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~tw~---~~~~~~~~~~~~~~~--~~v~~--~W~~~~ 69 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHTWS---FFDSDLSDAQHAWLA--DLVQT--DWPGYE 69 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCcccce---ecccccchhhhhhhh--hhheE--eCCCCE
Confidence 899999999999999999974 249999999998866542 111 111111110000000 00000 001111
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
+..+.....++ .....+++.+|.+.|.+.+.. + ++++.+|+++ ++++ |++.+
T Consensus 70 v~~~~~~~~l~-----~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~----v~l~d-------------- 121 (370)
T TIGR01789 70 VRFPKYRRKLK-----TAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADG----VDLAP-------------- 121 (370)
T ss_pred EECcchhhhcC-----CCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCE----EEECC--------------
Confidence 11111111111 234678999999999866543 3 7778899888 3322 34444
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEE
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLY 347 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~~l~ 347 (644)
|.+++|++||+|+|.+|.-... .......|+. |+.... +.++.. ..|.+...+ ..|..|+|
T Consensus 122 -g~~~~A~~VI~A~G~~s~~~~~-------------~~~Q~f~G~~--~r~~~p-~~~~~~-~lMD~~~~q-~~g~~F~Y 182 (370)
T TIGR01789 122 -GTRINARSVIDCRGFKPSAHLK-------------GGFQVFLGRE--MRLQEP-HGLENP-IIMDATVDQ-LAGYRFVY 182 (370)
T ss_pred -CCEEEeeEEEECCCCCCCcccc-------------ceeeEEEEEE--EEEcCC-CCCCcc-EEEeeeccC-CCCceEEE
Confidence 6789999999999988741110 1112223332 444433 444432 223333322 11345555
Q ss_pred --EeCCCeEEEEEEEccCCCC-CCCCcHHHHHHhhcCCcchhcccCCceeeecceeeecCC-cccCCcc-cCCCeEEEcc
Q 006466 348 --HMNDRQIALGLVVALNYHN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGG-LQSIPYP-VFPGGAIIGC 422 (644)
Q Consensus 348 --~~~~~~~~ig~~~~~d~~~-~~~~~~~~~~~~~~~p~i~~~l~~~~~i~~~~~~i~~gg-~~~~~~~-~~~~v~LiGD 422 (644)
|..++++.|.... +.. +.++..+..++++.... ..-+...+.+......+|... ......| ..++++++||
T Consensus 183 ~lP~~~~~~lvE~T~---~s~~~~l~~~~l~~~l~~~~~-~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~ 258 (370)
T TIGR01789 183 VLPLGSHDLLIEDTY---YADDPLLDRNALSQRIDQYAR-ANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGL 258 (370)
T ss_pred ECcCCCCeEEEEEEe---ccCCCCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeec
Confidence 6788888775332 223 33444333233322110 001111222222222454311 0000112 2456999999
Q ss_pred CCcccCCCCCcchHHHHHHHHHHHHHHh-ccccCCchHHHHHHH
Q 006466 423 AAGFLNVPKIKGTHTAMKSGMLAAEAGF-GVLHEDSNMEIYWDT 465 (644)
Q Consensus 423 AA~~~~P~~g~G~~~A~~sa~~lA~~l~-~~l~~~~~l~~Ye~~ 465 (644)
|||+++|.+|+|++.|++++..+|+.+. ....-..++..|...
T Consensus 259 AAg~~~P~tGyg~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~ 302 (370)
T TIGR01789 259 RAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLAAFIDSRARR 302 (370)
T ss_pred ccccccccccccHHHHHHHHHHHHhccCcCccchhhhhhHHHHH
Confidence 9999999999999999999999998874 211112235566655
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.68 E-value=1.1e-15 Score=154.77 Aligned_cols=156 Identities=24% Similarity=0.369 Sum_probs=112.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChH-HH----HHHhhhhhhcCCCeee
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-AL----NELLPQWKQEEAPIRV 179 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~-~l----~~l~~~~~~~~~~~~~ 179 (644)
..++||+||||||||++||+.|++. |++|+|+||...+|+....|+.+.++ .+ .+++..++.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv------- 89 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKA------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGI------- 89 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCC-------
Confidence 4579999999999999999999998 99999999999887755444432221 11 112221111
Q ss_pred eccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccC
Q 006466 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (644)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~ 259 (644)
+......+.|.+++..+...|.+++.+.|++|++++.|.++..++++++.+|.+.+..+..+
T Consensus 90 ------------------~~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~ 151 (257)
T PRK04176 90 ------------------RYKEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMA 151 (257)
T ss_pred ------------------CceeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEcccccccc
Confidence 10111223567889999999999999999999999999999887655788888764322222
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHc
Q 006466 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~ 295 (644)
|.. .+..+++|++||+|+|.++.+.+.+.++.
T Consensus 152 g~~----~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 152 GLH----VDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred CCC----CCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 321 11367999999999999999999886554
No 66
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.67 E-value=1.7e-15 Score=152.99 Aligned_cols=158 Identities=27% Similarity=0.403 Sum_probs=115.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHH-----HHHHhhhhhhcCCCeeee
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-----LNELLPQWKQEEAPIRVP 180 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~-----l~~l~~~~~~~~~~~~~~ 180 (644)
.++||+|||||||||++|+.|++. |++|+||||...+|+....++.+.+.. ..+++..++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~g--------- 84 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN------GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFG--------- 84 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCC---------
Confidence 479999999999999999999999 999999999999887655444322111 111111111
Q ss_pred ccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCC-cEEEEEeCcCccccC
Q 006466 181 VSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN-KVIGIGTNDMGIAKD 259 (644)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g-~v~gV~~~d~g~~~~ 259 (644)
++......+.+..++..+.+.|.+++.+.|+++++++.|.++..++++ +|.||.++...+..+
T Consensus 85 ----------------i~~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~ 148 (254)
T TIGR00292 85 ----------------IRYEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELA 148 (254)
T ss_pred ----------------CCeeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccccc
Confidence 111111122455688999999999999999999999999999887643 688998865333233
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
|.. .+..+++|++||+|||..+.+.+.+.+++.+.
T Consensus 149 g~~----~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 149 GLH----VDPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred CCC----CCCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 321 01368999999999999999999998887765
No 67
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.64 E-value=1.2e-14 Score=148.67 Aligned_cols=331 Identities=17% Similarity=0.174 Sum_probs=175.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCC--CCCCCccccc------CccChHH--HHHHhhhhhhcCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--AEVGAHIISG------NVFEPRA--LNELLPQWKQEEA 175 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~--~~~g~~~~~g------~~i~~~~--l~~l~~~~~~~~~ 175 (644)
..||||||||||+|+++|..|... +....++|.++|-+ +.++.-..+. ..+.+.. +-+.+..|.....
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~sn--p~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~ 112 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSN--PPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFH 112 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccC--CccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhh
Confidence 479999999999999999999853 44447899999988 4444322211 1122322 2233344443211
Q ss_pred CeeeeccCCcEEEec--cCCccccCCC-CCCCCcEEEcHHHHHHHHHH-HH--HhcCCEEecCceEEEEEE------cCC
Q 006466 176 PIRVPVSSDKFWFLT--KDRAFSLPSP-FSNRGNYVISLSQLVRWLGG-KA--EELGVEIYPGFAASEILY------DAD 243 (644)
Q Consensus 176 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~v~r~~l~~~L~~-~a--~~~Gv~i~~g~~v~~v~~------~~~ 243 (644)
.....+ ..+...+ ....+.+... +...-++++....+...|+. ++ +...|+|....++.++.. +++
T Consensus 113 ~R~~~~--~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n 190 (481)
T KOG3855|consen 113 DRYQKF--SRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN 190 (481)
T ss_pred hccccc--cceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence 111111 1111111 1122222211 11122577777777777773 22 234699999999887755 345
Q ss_pred CcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCC
Q 006466 244 NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH 323 (644)
Q Consensus 244 g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 323 (644)
+...-+.+.| |..+..|++|+|||.+|.+|+.. +++.... ....+ |+.....+..+..
T Consensus 191 ~~~~~i~l~d---------------g~~~~~~LLigAdg~Ns~vR~~s----nid~~~~-ny~~h--avVAtl~l~~~~~ 248 (481)
T KOG3855|consen 191 GMWFHITLTD---------------GINFATDLLIGADGFNSVVRKAS----NIDVASW-NYDQH--AVVATLKLEEEAI 248 (481)
T ss_pred cceEEEEecc---------------Cceeeeceeeccccccchhhhhc----CCCcccc-cccce--eeeEEEEeccccc
Confidence 6666677766 78899999999999999988853 5654212 22222 2222223333222
Q ss_pred CCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCC-CCCcHHHHHHh------hcCCcch-----------
Q 006466 324 NPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP-FLNPYEEFQKF------KHHPAIK----------- 385 (644)
Q Consensus 324 ~~g~~~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~~~-~~~~~~~~~~~------~~~p~i~----------- 385 (644)
..+...|-| +.. |..-+.|..++..++.+......... ..-|.+.|-.+ .++|.+.
T Consensus 249 ~~~~AwQRF---lP~---GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~ 322 (481)
T KOG3855|consen 249 LNGVAWQRF---LPT---GPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNG 322 (481)
T ss_pred ccchhHHhc---CCC---CceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcc
Confidence 222211111 111 22335555555444443332110000 00000111000 0011000
Q ss_pred ------hcccCCc---eeeec---------ceeeecCCcccCCcccCCCeEEEccCCcccCCCCCcchHHHHHHHHHHHH
Q 006466 386 ------PLLEGGT---VVQYG---------ARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAE 447 (644)
Q Consensus 386 ------~~l~~~~---~i~~~---------~~~i~~gg~~~~~~~~~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~ 447 (644)
.++...+ ...+. .|+.-..|+........+|+.|+|||||.++|+.|||+++...|...|.+
T Consensus 323 ~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~ 402 (481)
T KOG3855|consen 323 RAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVD 402 (481)
T ss_pred hhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHH
Confidence 0110000 00111 11111133334446777899999999999999999999999999999999
Q ss_pred HHhccccC------CchHHHHHHHHHH
Q 006466 448 AGFGVLHE------DSNMEIYWDTLQK 468 (644)
Q Consensus 448 ~l~~~l~~------~~~l~~Ye~~~~~ 468 (644)
++.++... -..|+.|+.++.+
T Consensus 403 sL~~ai~~g~DlgS~~~L~~y~~~~~~ 429 (481)
T KOG3855|consen 403 SLSEAIVSGLDLGSVEHLEPYERERLQ 429 (481)
T ss_pred HHHHHHHhcccccchhhhhHHHHHHhh
Confidence 99887654 2567778766643
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.62 E-value=4.1e-15 Score=141.58 Aligned_cols=157 Identities=27% Similarity=0.426 Sum_probs=107.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHH-----HHHHhhhhhhcCCCeee
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-----LNELLPQWKQEEAPIRV 179 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~-----l~~l~~~~~~~~~~~~~ 179 (644)
..++||+||||||+||+||+.|++. |++|+|+|++..+|+....|+.+-++. ...++++++.
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi------- 81 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKA------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGI------- 81 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHH------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT--------
T ss_pred hccCCEEEECCChhHHHHHHHHHHC------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCc-------
Confidence 4579999999999999999999999 999999999999998776665443211 1223333221
Q ss_pred eccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccC
Q 006466 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (644)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~ 259 (644)
+......+-|+.+...+...|..++.+.|++|+..+.|+++...++++|.||.++-.-+...
T Consensus 82 ------------------~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~ 143 (230)
T PF01946_consen 82 ------------------PYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMA 143 (230)
T ss_dssp --------------------EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT
T ss_pred ------------------eeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHh
Confidence 11111234567788999999999999999999999999999987767899998875443334
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcC
Q 006466 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK 296 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~ 296 (644)
|-+ .+-..|+|++||+|||.-+.+.+.+.++..
T Consensus 144 glH----vDPl~i~ak~ViDaTGHda~v~~~~~kk~~ 176 (230)
T PF01946_consen 144 GLH----VDPLTIRAKVVIDATGHDAEVVRVLAKKLK 176 (230)
T ss_dssp --T-----B-EEEEESEEEE---SSSSSTSHHHHHHH
T ss_pred hcC----CCcceEEEeEEEeCCCCchHHHHHHHHHhh
Confidence 332 233689999999999999988877776653
No 69
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.8e-14 Score=134.79 Aligned_cols=153 Identities=25% Similarity=0.419 Sum_probs=116.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChH-----HHHHHhhhhhhcCCCeeee
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-----ALNELLPQWKQEEAPIRVP 180 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~-----~l~~l~~~~~~~~~~~~~~ 180 (644)
.+.||+||||||+||+||+.|++. |++|+|+||+-.+|+.+..|+.+-++ ...+++.+++.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI-------- 94 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKA------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGI-------- 94 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhC------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCC--------
Confidence 467999999999999999999999 99999999999999887766655432 22344443322
Q ss_pred ccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 181 VSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
+......+-|+.+...+...|..++-+.|++|+.++.|.++...++.+|.||.++-.-+...|
T Consensus 95 -----------------~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~ 157 (262)
T COG1635 95 -----------------RYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG 157 (262)
T ss_pred -----------------cceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcc
Confidence 212223346778889999999999999999999999999999887547999987754333333
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHH
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 293 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~ 293 (644)
- .-+-..++|++||+|||.-..+.+.+.+
T Consensus 158 l----hvDPl~i~a~~VvDaTGHda~v~~~~~k 186 (262)
T COG1635 158 L----HVDPLTIRAKAVVDATGHDAEVVSFLAK 186 (262)
T ss_pred c----ccCcceeeEEEEEeCCCCchHHHHHHHH
Confidence 2 1234679999999999988877766543
No 70
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=141.14 Aligned_cols=163 Identities=25% Similarity=0.316 Sum_probs=110.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCc----cChHHHHHHhhhhhhcCC----C
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNV----FEPRALNELLPQWKQEEA----P 176 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~----i~~~~l~~l~~~~~~~~~----~ 176 (644)
+.+||+|||||||||.||+.+++. |.+|+|||+++.+|...+ +|+. .+....++++........ .
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence 468999999999999999999999 999999999999887653 3321 222223344333221110 0
Q ss_pred ee--------eeccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEE
Q 006466 177 IR--------VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG 248 (644)
Q Consensus 177 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~g 248 (644)
+. ..+....+.+..+..+.-||.. -.-..+.+.|..++++.||+|+++++|.++..+++ ...
T Consensus 76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~s--------dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--~f~ 145 (408)
T COG2081 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDS--------DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--GFR 145 (408)
T ss_pred HHhCCHHHHHHHHHhcCCeeEEccCceecCCc--------cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--eEE
Confidence 11 1111122222222222223321 23478899999999999999999999999998863 345
Q ss_pred EEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc-------chHHHHHHcCCCc
Q 006466 249 IGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS-------LSEKLIKNFKLRE 299 (644)
Q Consensus 249 V~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~-------l~~~l~~~~~~~~ 299 (644)
|.+.+ |.+++||.+|+|+|..|. ..-++++++|++.
T Consensus 146 l~t~~---------------g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 146 LDTSS---------------GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EEcCC---------------CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 77776 668999999999997654 2456777888876
No 71
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.51 E-value=1.3e-12 Score=147.92 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=44.0
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.+.|..|..-.-.+.|..+||.+++....+. . .+.||++.|+.|+ .|...||+++|+..
T Consensus 502 ~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~--~-~~~i~~~~C~~Cg---~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 502 EAARCLSCGNCFECDNCYGACPQDAIIKLGPG--R-RYHFDYDKCTGCH---ICADVCPCGAIEMG 561 (564)
T ss_pred hcccCcccccccccchhhhhCChhheeeecCC--c-eEEEecccCcChh---HHHhhcCcCceEec
Confidence 44555555211113479999999998765431 1 4789999999999 99999999999864
No 72
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.46 E-value=3.9e-12 Score=135.23 Aligned_cols=162 Identities=30% Similarity=0.423 Sum_probs=101.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc-c-cccCccChH-------HH-------HHHhhhhhh
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-I-ISGNVFEPR-------AL-------NELLPQWKQ 172 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-~-~~g~~i~~~-------~l-------~~l~~~~~~ 172 (644)
||+|||||++|+++|+.|++. |.+|+|||+. .++.. + .+++.+.+. .+ .+.++.|..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~------G~~V~l~e~~-~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 73 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR------GHSVTLLERG-DIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAE 73 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT------TSEEEEEESS-STTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCeEEEEeec-cccccccccccccccccccccccccccchhhhhccchhhhhh
Confidence 899999999999999999999 9999999999 44432 2 233333221 11 112233311
Q ss_pred -cCCCeeeeccCCc--------------------------EEEeccCC-ccccCCCC-------CCCCcEEEcHHHHHHH
Q 006466 173 -EEAPIRVPVSSDK--------------------------FWFLTKDR-AFSLPSPF-------SNRGNYVISLSQLVRW 217 (644)
Q Consensus 173 -~~~~~~~~~~~~~--------------------------~~~~~~~~-~~~~~~~~-------~~~~~~~v~r~~l~~~ 217 (644)
...+.... .... +.+++... ...+|... .......++...+.+.
T Consensus 74 ~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~ 152 (358)
T PF01266_consen 74 EYGIPVGFR-PCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQA 152 (358)
T ss_dssp HTTSSCEEE-ECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHH
T ss_pred hcCcccccc-cccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhh
Confidence 11111100 0001 11111100 00011111 1133566899999999
Q ss_pred HHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCC
Q 006466 218 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKL 297 (644)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~ 297 (644)
|.+.+++.|++|+.+++|+++..++ +.+.+|.+.+ |. ++||.||+|+|.++ ..+.+..+.
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~---------------g~-i~ad~vV~a~G~~s---~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSD---------------GE-IRADRVVLAAGAWS---PQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETT---------------EE-EEECEEEE--GGGH---HHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhcc-cccccccccc---------------cc-cccceeEecccccc---eeeeecccc
Confidence 9999999999999999999999887 5677899987 55 99999999999875 456666665
Q ss_pred C
Q 006466 298 R 298 (644)
Q Consensus 298 ~ 298 (644)
.
T Consensus 213 ~ 213 (358)
T PF01266_consen 213 D 213 (358)
T ss_dssp S
T ss_pred c
Confidence 4
No 73
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.45 E-value=2.7e-11 Score=132.28 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=55.9
Q ss_pred EEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 208 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
.++...+...|.+.+++.|++|+++++|+++..++ +.+++|++.+ .++.||.||+|+|.++
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~----------------~~~~a~~VV~a~G~~~-- 257 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGG----------------GVITADAYVVALGSYS-- 257 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCC----------------cEEeCCEEEECCCcch--
Confidence 35667899999999999999999999999998766 4555677654 4689999999999986
Q ss_pred hHHHHHHcCCC
Q 006466 288 SEKLIKNFKLR 298 (644)
Q Consensus 288 ~~~l~~~~~~~ 298 (644)
..+.+.++++
T Consensus 258 -~~l~~~~g~~ 267 (416)
T PRK00711 258 -TALLKPLGVD 267 (416)
T ss_pred -HHHHHHhCCC
Confidence 3455555554
No 74
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.44 E-value=3e-11 Score=140.74 Aligned_cols=42 Identities=36% Similarity=0.523 Sum_probs=37.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
...+|+||||||||++||..|++. |++|+|+|+.+.+|+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~------G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA------GHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecccccCccee
Confidence 356899999999999999999999 999999999988887543
No 75
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.42 E-value=3.8e-11 Score=140.54 Aligned_cols=41 Identities=41% Similarity=0.553 Sum_probs=37.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
.++|+|||||||||+||+.|++. |++|+|+|+.+.+|+...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~------G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA------GHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCeEEEEecccccCceee
Confidence 57999999999999999999999 999999999998887653
No 76
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.41 E-value=5.3e-11 Score=129.67 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=55.6
Q ss_pred EEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 208 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
.++...+...|.+.+.+.|++++.+++|+++...+++.+++|++.+ | ++.++.||+|+|+++.
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~- 241 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS- 241 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH-
Confidence 3566778888999999999999999999999765446677788765 4 6899999999888864
Q ss_pred hHHHHHHcCCC
Q 006466 288 SEKLIKNFKLR 298 (644)
Q Consensus 288 ~~~l~~~~~~~ 298 (644)
.+.+..++.
T Consensus 242 --~l~~~~g~~ 250 (407)
T TIGR01373 242 --VVAAMAGFR 250 (407)
T ss_pred --HHHHHcCCC
Confidence 343444554
No 77
>PLN02661 Putative thiazole synthesis
Probab=99.40 E-value=1.5e-11 Score=127.70 Aligned_cols=152 Identities=22% Similarity=0.333 Sum_probs=96.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCc-cChH----HHHHHhhhhhhcCCCeee
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNV-FEPR----ALNELLPQWKQEEAPIRV 179 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~-i~~~----~l~~l~~~~~~~~~~~~~ 179 (644)
..++||+|||||++|+++|+.|++. +|++|+||||...+|+....|+. +... ...+++.+++.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV------- 157 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGV------- 157 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCC-------
Confidence 4578999999999999999999974 38999999999887764332322 2111 11222222211
Q ss_pred eccCCcEEEeccCCccccCCCCCCCCcEEE--cHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
.+.. .++|.+ +-..+.+.|.+++.+ .|++++.++.+.++..++ +++.||.++...+
T Consensus 158 ----------------~fd~----~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v 216 (357)
T PLN02661 158 ----------------PYDE----QENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALV 216 (357)
T ss_pred ----------------Cccc----CCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchh
Confidence 1100 012222 334556677776654 689999999999999875 7788998754322
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHH
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~ 290 (644)
..++......+ ...|+||.||+|||..+.+...
T Consensus 217 ~~~~~~~s~~d-p~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 217 AQNHDTQSCMD-PNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hhccCCCCccc-eeEEECCEEEEcCCCCCcchhh
Confidence 22222100001 1469999999999987765443
No 78
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.39 E-value=3.4e-12 Score=137.36 Aligned_cols=158 Identities=27% Similarity=0.362 Sum_probs=83.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-cc--Cc------cCh-----------HHHHHHh
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SG--NV------FEP-----------RALNELL 167 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g--~~------i~~-----------~~l~~l~ 167 (644)
|||+|||||||||.||+.|++. |.+|+|+||++.+|...+ +| -| .++ +.+...+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~------g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK------GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT------T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 7999999999999999999999 999999999999875432 22 11 111 1111111
Q ss_pred hhhhhcCCCeeeeccCCcEEEeccCCccccCCCCCCCCcEEE--cHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCc
Q 006466 168 PQWKQEEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNK 245 (644)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~ 245 (644)
..+...+ +........+.+..+..+ .-|.. ....+.+.|.+.+++.||+|+++++|.+++.+++ .
T Consensus 75 ~~f~~~d--~~~ff~~~Gv~~~~~~~g----------r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~ 141 (409)
T PF03486_consen 75 KRFSPED--LIAFFEELGVPTKIEEDG----------RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-G 141 (409)
T ss_dssp HHS-HHH--HHHHHHHTT--EEE-STT----------EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-E
T ss_pred hcCCHHH--HHHHHHhcCCeEEEcCCC----------EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-c
Confidence 1110000 000000000100000000 01222 2578889999999999999999999999988774 4
Q ss_pred EEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc-------hHHHHHHcCCCc
Q 006466 246 VIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL-------SEKLIKNFKLRE 299 (644)
Q Consensus 246 v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l-------~~~l~~~~~~~~ 299 (644)
+..|.+++ +.++.||.||+|+|..|.- .-.+++++|+..
T Consensus 142 ~f~v~~~~---------------~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 142 VFGVKTKN---------------GGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp EEEEEETT---------------TEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred eeEeeccC---------------cccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 66788843 4789999999999987631 234556666654
No 79
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.39 E-value=3.2e-12 Score=141.70 Aligned_cols=197 Identities=22% Similarity=0.258 Sum_probs=116.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC--CCCcc-cccCc--cCh---------HHHHHHhhhhh
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAHI-ISGNV--FEP---------RALNELLPQWK 171 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~--~g~~~-~~g~~--i~~---------~~l~~l~~~~~ 171 (644)
.++||||||+|+||++||+.|++. |.+|+||||.+. .|+.+ .+++. ... ....+++.++.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~------G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA------GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLL 76 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHH
Confidence 468999999999999999999999 999999999874 45433 23321 000 01122233322
Q ss_pred hcCC----C--eee--eccCCcEEEeccCCccccCCC----CC-CCCc--EEEcHHHHHHHHHHHHHhcCCEEecCceEE
Q 006466 172 QEEA----P--IRV--PVSSDKFWFLTKDRAFSLPSP----FS-NRGN--YVISLSQLVRWLGGKAEELGVEIYPGFAAS 236 (644)
Q Consensus 172 ~~~~----~--~~~--~~~~~~~~~~~~~~~~~~~~~----~~-~~~~--~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~ 236 (644)
.... + ... ....+.+.|+.+ .++.+... .. .... +.-....+...|.+.+++.|++|+++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~s~~~~~wl~~-~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~ 155 (466)
T PRK08274 77 RVTGGRTDEALARLLIRESSDCRDWMRK-HGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVT 155 (466)
T ss_pred HhhCCCCCHHHHHHHHHcCHHHHHHHHh-CCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 1110 0 000 001111112211 11111100 00 0001 111135788899999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcc---cccCcccceeEEE
Q 006466 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYALGIK 313 (644)
Q Consensus 237 ~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~---~~~~~~~~~~g~~ 313 (644)
+++.++ ++|++|.+.+ .+|+ ...++|+.||+|+|..+.....+.+.++.... ....+...|.|++
T Consensus 156 ~l~~~~-g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ 223 (466)
T PRK08274 156 ALELDD-GRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLK 223 (466)
T ss_pred EEEecC-CeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHH
Confidence 998764 7788887742 2332 35789999999999998866666554543210 1234556788887
Q ss_pred EEEeecCC
Q 006466 314 EVWEIDEG 321 (644)
Q Consensus 314 ~~~~~~~~ 321 (644)
+.+.+...
T Consensus 224 ma~~~Ga~ 231 (466)
T PRK08274 224 ALLDAGAD 231 (466)
T ss_pred HHHHcCCC
Confidence 76666554
No 80
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.35 E-value=2e-10 Score=123.66 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=49.4
Q ss_pred EEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 208 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.++...+...+.+.+.+.|++++.+++|+++..+++ . +.|.+.+ | ++.+|.||+|+|.++
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~---------------g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD-G-VTVTTAD---------------G-TYEAKKLVVSAGAWV 204 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-e-EEEEeCC---------------C-EEEeeEEEEecCcch
Confidence 467788888888889899999999999999987653 3 3577654 4 689999999999885
No 81
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.34 E-value=8e-13 Score=144.46 Aligned_cols=141 Identities=25% Similarity=0.371 Sum_probs=39.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccC--h-----HHHHHHhhhhhhcCCCeeeec
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE--P-----RALNELLPQWKQEEAPIRVPV 181 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~--~-----~~l~~l~~~~~~~~~~~~~~~ 181 (644)
|||||||||||++||+.+++. |++|+||||.+.+|+...+++... . .....+...+...-.... ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~-~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARG-GY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------
T ss_pred CEEEECccHHHHHHHHHHHHC------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhc-cc
Confidence 899999999999999999999 999999999999998776655422 1 112222222222100000 00
Q ss_pred cCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
..+........+.+++..+..+|.+.+++.|++|++++.|.++..++ ++|++|++.+ ++|
T Consensus 74 --------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~----~~g- 133 (428)
T PF12831_consen 74 --------------PQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVET----KSG- 133 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc----ccc-
Confidence 00000000012456667777888888888999999999999999876 6788999875 333
Q ss_pred cccccccceEEEcCEEEEecCC
Q 006466 262 KKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
..+|+||+||+|||-
T Consensus 134 -------~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 134 -------RKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------
T ss_pred -------ccccccccccccccc
Confidence 268999999999993
No 82
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.33 E-value=4.4e-10 Score=122.58 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=52.3
Q ss_pred EcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcch
Q 006466 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 209 v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~ 288 (644)
++...+...|.+.+++.|++|+.+++|+++..++ +.+ .|.+.+ .++. ++.+++||.||+|+|.++.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~v~~~~----~~~~------~~~~i~a~~vV~a~G~~s~-- 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGV-VLTVQP----SAEH------PSRTLEFDGVVVCAGVGSR-- 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEE-EEEEEc----CCCC------ccceEecCEEEECCCcChH--
Confidence 4566888899999999999999999999998765 333 344332 0000 0236899999999999973
Q ss_pred HHHHHHcCCC
Q 006466 289 EKLIKNFKLR 298 (644)
Q Consensus 289 ~~l~~~~~~~ 298 (644)
.+.+.++..
T Consensus 260 -~l~~~~~~~ 268 (410)
T PRK12409 260 -ALAAMLGDR 268 (410)
T ss_pred -HHHHHhCCC
Confidence 344444443
No 83
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.33 E-value=9.8e-11 Score=135.19 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=94.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCC--CcccccCccChH---------H--------HHHHh
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG--AHIISGNVFEPR---------A--------LNELL 167 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g--~~~~~g~~i~~~---------~--------l~~l~ 167 (644)
.+||||||||++|+++|+.|++. |++|+||||...++ +...+++.+.+. . ..+++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~------G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~ 333 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR------GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFY 333 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC------CCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 99999999986443 322333433221 0 11223
Q ss_pred hhhhhcCCCe--------eeeccCCc----------------EEEeccCCccc-cCCC-----CCCCCcEEEcHHHHHHH
Q 006466 168 PQWKQEEAPI--------RVPVSSDK----------------FWFLTKDRAFS-LPSP-----FSNRGNYVISLSQLVRW 217 (644)
Q Consensus 168 ~~~~~~~~~~--------~~~~~~~~----------------~~~~~~~~~~~-~~~~-----~~~~~~~~v~r~~l~~~ 217 (644)
+.+....... ....+.+. ..+++...... .+.. ........++...+...
T Consensus 334 ~~l~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~a 413 (662)
T PRK01747 334 DALPAAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRA 413 (662)
T ss_pred HHHHhcCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHH
Confidence 3222101000 00000000 00111000000 0100 11112334678899999
Q ss_pred HHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 218 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
|.+.+++ |+++++++.|+++..++ +.+ .|.+.+ |..++||.||+|+|.++.
T Consensus 414 L~~~a~~-Gv~i~~~~~V~~i~~~~-~~~-~v~t~~---------------g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 414 LLALAGQ-QLTIHFGHEVARLERED-DGW-QLDFAG---------------GTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHhccc-CcEEEeCCEeeEEEEeC-CEE-EEEECC---------------CcEEECCEEEECCCCCcc
Confidence 9999999 99999999999998765 334 366654 556789999999999874
No 84
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.32 E-value=1.1e-10 Score=131.99 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=106.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC-----hHHHHHHhhhhhhcCCCe---
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEAPI--- 177 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~~~--- 177 (644)
++||||||||+|||+||+.+++. ++|++|+||||....++++. +++.+. ....+.++.+......-+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~ 78 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQ 78 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcH
Confidence 58999999999999999999986 23689999999987776542 322221 111122222211110000
Q ss_pred ---e--eeccCCcEEEeccCCccccCC-----------C-CCCCCcEEE---cHHHHHHHHHHHHHhc-CCEEecCceEE
Q 006466 178 ---R--VPVSSDKFWFLTKDRAFSLPS-----------P-FSNRGNYVI---SLSQLVRWLGGKAEEL-GVEIYPGFAAS 236 (644)
Q Consensus 178 ---~--~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~v---~r~~l~~~L~~~a~~~-Gv~i~~g~~v~ 236 (644)
. .....+.+.|+. ..++.|.. . ......+.. ....+.+.|.+++.+. ||+++.++.++
T Consensus 79 ~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~ 157 (580)
T TIGR01176 79 DVVEYFVAEAPKEMVQLE-HWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVT 157 (580)
T ss_pred HHHHHHHHHhHHHHHHHH-HcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEE
Confidence 0 000011111111 01111100 0 000001111 2467888999888774 79999999999
Q ss_pred EEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEE
Q 006466 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW 316 (644)
Q Consensus 237 ~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (644)
+++.++ |+|.||...+. .+|+ -..+.|+.||+|||..+.+- ... ...+...|.|+.+.+
T Consensus 158 ~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~~~-------~~~---t~~~~~tGdG~~mA~ 216 (580)
T TIGR01176 158 DLLVDD-GRVCGLVAIEM---AEGR-------LVTILADAVVLATGGAGRVY-------PFN---TNGGIVTGDGMAMAF 216 (580)
T ss_pred EEEeeC-CEEEEEEEEEc---CCCc-------EEEEecCEEEEcCCCCcccc-------cCC---CCCCCcCcHHHHHHH
Confidence 999864 78888875331 2332 15789999999999998642 111 223345566666555
Q ss_pred eecCC
Q 006466 317 EIDEG 321 (644)
Q Consensus 317 ~~~~~ 321 (644)
.....
T Consensus 217 ~aGA~ 221 (580)
T TIGR01176 217 RHGVP 221 (580)
T ss_pred HcCCC
Confidence 54443
No 85
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.32 E-value=1.3e-11 Score=135.69 Aligned_cols=193 Identities=23% Similarity=0.261 Sum_probs=112.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC-CeEEEEcCCCCCCCcc-cccCccC---hH---------HHHHHhhhhhhcC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI-ISGNVFE---PR---------ALNELLPQWKQEE 174 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~-~~g~~i~---~~---------~l~~l~~~~~~~~ 174 (644)
||||||||.||++||+.|++. | .+|+||||.+..|+.+ .+++.+. .. ...+++.++....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~------G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA------GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG 74 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 899999999999999999999 9 9999999998877654 2343321 11 1122222221110
Q ss_pred C----C--eee--eccCCcEEEeccCCccccC-----------CCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceE
Q 006466 175 A----P--IRV--PVSSDKFWFLTKDRAFSLP-----------SPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAA 235 (644)
Q Consensus 175 ~----~--~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v 235 (644)
. + ... ....+.+.|+.....+.++ ..... .........+.+.|.+.+++.|++|++++.|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v 153 (439)
T TIGR01813 75 RGINDPELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRP-TGGAGSGAEIVQKLYKKAKKEGIDTRLNSKV 153 (439)
T ss_pred CCCCCHHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccC-CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEe
Confidence 0 0 000 0001111222211111111 00000 0001234578899999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCc---ccccCcccceeEE
Q 006466 236 SEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE---KSHAQHQTYALGI 312 (644)
Q Consensus 236 ~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~---~~~~~~~~~~~g~ 312 (644)
++++.+++++|++|.+.+ .+|+ -..+.+|.||+|+|.++.. .+|.+.+.... .....+...|.|+
T Consensus 154 ~~l~~~~~g~v~Gv~~~~----~~g~-------~~~~~a~~VVlAtGg~~~n-~~m~~~~~p~~~~~~~~~~~~~tGdG~ 221 (439)
T TIGR01813 154 EDLIQDDQGTVVGVVVKG----KGKG-------IYIKAAKAVVLATGGFGSN-KEMIAKYDPTLKGLGSTNQPGATGDGL 221 (439)
T ss_pred eEeEECCCCcEEEEEEEe----CCCe-------EEEEecceEEEecCCCCCC-HHHHHHhCCCcCCCCcCCCCCCchHHH
Confidence 999987767888887653 1222 1357899999999999984 45555553221 0112334556666
Q ss_pred EEEEeecC
Q 006466 313 KEVWEIDE 320 (644)
Q Consensus 313 ~~~~~~~~ 320 (644)
++...+..
T Consensus 222 ~ma~~aGa 229 (439)
T TIGR01813 222 LMAEKIGA 229 (439)
T ss_pred HHHHHcCC
Confidence 65544443
No 86
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.31 E-value=3.2e-11 Score=128.65 Aligned_cols=171 Identities=28% Similarity=0.352 Sum_probs=109.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccc--cCcc------ChHHH--------HHHhhh
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS--GNVF------EPRAL--------NELLPQ 169 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~--g~~i------~~~~l--------~~l~~~ 169 (644)
+.+||||||||+.|+++|+.|++. .|+++|+||||.+.++.++.+ .+++ .+..+ .+..-.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~----~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFA 77 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHh----CCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999999 334999999999988765432 1222 11111 011111
Q ss_pred hh-hcCCC------eeeeccCCcE------------------EEeccCCcccc-CCC-------CCCCCcEEEcHHHHHH
Q 006466 170 WK-QEEAP------IRVPVSSDKF------------------WFLTKDRAFSL-PSP-------FSNRGNYVISLSQLVR 216 (644)
Q Consensus 170 ~~-~~~~~------~~~~~~~~~~------------------~~~~~~~~~~~-~~~-------~~~~~~~~v~r~~l~~ 216 (644)
|. ..+.+ +......+.+ ..++...-..+ |.. ..-....+|+-..+..
T Consensus 78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred HHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHH
Confidence 11 11111 1111111111 11111111111 111 1123356789999999
Q ss_pred HHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceE-EEcCEEEEecCCCCcchHHHHHHc
Q 006466 217 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVE-LRGRITLLAEGCRGSLSEKLIKNF 295 (644)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~-i~a~~vV~A~G~~s~l~~~l~~~~ 295 (644)
.|.+.++++|++++++++|+++...++| +..+.+.+ |.+ ++|+.||.|.|..+ ..|++..
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AGl~A---d~la~~~ 218 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAGLYA---DPLAQMA 218 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCchhH---HHHHHHh
Confidence 9999999999999999999999998876 44466554 444 99999999999885 5677777
Q ss_pred CCCc
Q 006466 296 KLRE 299 (644)
Q Consensus 296 ~~~~ 299 (644)
++..
T Consensus 219 g~~~ 222 (429)
T COG0579 219 GIPE 222 (429)
T ss_pred CCCc
Confidence 8874
No 87
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.31 E-value=4.1e-10 Score=121.41 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=55.4
Q ss_pred cEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
...++...+.+.|.+.+++.|++++.+++|+++..++ +.+ .|.+.+ + ++.+|.||+|+|.++
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~---------------~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTK---------------G-SYQANKLVVTAGAWT 200 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCC---------------C-EEEeCEEEEecCcch
Confidence 4567888999999999999999999999999998765 333 466654 3 689999999999875
Q ss_pred cchHHHHHHcCCC
Q 006466 286 SLSEKLIKNFKLR 298 (644)
Q Consensus 286 ~l~~~l~~~~~~~ 298 (644)
. .+.+.+++.
T Consensus 201 ~---~l~~~~g~~ 210 (380)
T TIGR01377 201 S---KLLSPLGIE 210 (380)
T ss_pred H---HHhhhcccC
Confidence 3 344444544
No 88
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.31 E-value=5e-10 Score=126.15 Aligned_cols=172 Identities=17% Similarity=0.230 Sum_probs=102.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc-ccccCccCh---------HHHH------HHhhh
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEP---------RALN------ELLPQ 169 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-~~~g~~i~~---------~~l~------~l~~~ 169 (644)
+.+||||||||+.|+++|+.|+++ |++|+||||.+...+. ..+.+.+.. .... +++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r------G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~ 78 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR------GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKR 78 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc------CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999 9999999997543222 222232221 1000 11111
Q ss_pred hhhc----CCCeeeeccCCcE-----------------EEeccCCccc-cCCC-------CCCCCcEEEcHHHHHHHHHH
Q 006466 170 WKQE----EAPIRVPVSSDKF-----------------WFLTKDRAFS-LPSP-------FSNRGNYVISLSQLVRWLGG 220 (644)
Q Consensus 170 ~~~~----~~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~-------~~~~~~~~v~r~~l~~~L~~ 220 (644)
+... ...+......+.. .+++...... .|.. +... ...++...|...+..
T Consensus 79 ~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~ 157 (546)
T PRK11101 79 IARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANML 157 (546)
T ss_pred hchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHH
Confidence 1110 0000011111111 1111000000 1111 0011 245788999999999
Q ss_pred HHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 221 KAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 221 ~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
.|.++|++++++++|+++..++ +.+++|++.+. .+|+ +.+|+||.||.|+|.++ ..+.+..++.
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa---~~l~~~~g~~ 221 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWG---QHIAEYADLR 221 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhH---HHHHHhcCCC
Confidence 9999999999999999998765 56778887541 1121 25799999999999986 4555445543
No 89
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=1.5e-10 Score=131.41 Aligned_cols=166 Identities=22% Similarity=0.300 Sum_probs=93.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCC---CeEEEEcCCCCCCCccc-ccCcc----Ch---HHHHHHhhhhhh
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD---LSVCVVEKGAEVGAHII-SGNVF----EP---RALNELLPQWKQ 172 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G---~~V~viEk~~~~g~~~~-~g~~i----~~---~~l~~l~~~~~~ 172 (644)
+..++||||||||.|||+||+.+++. | .+|+||||....++++. +++.+ .+ ...+..+.+...
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~------G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~ 75 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAER------SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVK 75 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHh------CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHH
Confidence 34578999999999999999999998 8 89999999987666442 22222 11 111111111100
Q ss_pred cCC----C--eee--eccCCcEEEeccCCccccCC-----------CC--CCCCcEEE--cHHHHHHHHHHHHHh-cCCE
Q 006466 173 EEA----P--IRV--PVSSDKFWFLTKDRAFSLPS-----------PF--SNRGNYVI--SLSQLVRWLGGKAEE-LGVE 228 (644)
Q Consensus 173 ~~~----~--~~~--~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~v--~r~~l~~~L~~~a~~-~Gv~ 228 (644)
... + +.. ....+.+.|+.. .++.|.. .. .....+.. ....+.+.|.+++.+ .||+
T Consensus 76 ~g~~~~d~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~ 154 (577)
T PRK06069 76 GSDFLADQDAVEVFVREAPEEIRFLDH-WGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIH 154 (577)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHH-cCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCE
Confidence 000 0 000 000011111110 1111100 00 00000000 134577888888876 5899
Q ss_pred EecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 229 IYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 229 i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
++.++.+++++.++ +.+.||...+. .+|+ -..+.|+.||+|||+.+.+
T Consensus 155 i~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 155 FYDEHFVTSLIVEN-GVFKGVTAIDL---KRGE-------FKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EEECCEEEEEEEEC-CEEEEEEEEEc---CCCe-------EEEEECCcEEEcCchhccc
Confidence 99999999998764 78888875320 1222 1468999999999998754
No 90
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.31 E-value=3.2e-11 Score=136.53 Aligned_cols=167 Identities=18% Similarity=0.245 Sum_probs=94.8
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC-----hHHHHHHhhhhhhcCC---
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEA--- 175 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~--- 175 (644)
+.++||||||+|.|||+||+.+++. ++|.+|+||||....++++. +++.+. ....+.++.+......
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~ 77 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLC 77 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCC
Confidence 3568999999999999999999986 23589999999987666542 222211 1111111211111000
Q ss_pred -C--ee--eeccCCcEEEeccCCccccCCCC------CCCC------cEE-E--cHHHHHHHHHHHHHhc-CCEEecCce
Q 006466 176 -P--IR--VPVSSDKFWFLTKDRAFSLPSPF------SNRG------NYV-I--SLSQLVRWLGGKAEEL-GVEIYPGFA 234 (644)
Q Consensus 176 -~--~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~------~~~-v--~r~~l~~~L~~~a~~~-Gv~i~~g~~ 234 (644)
+ +. .....+.+.|+. ..++.|.... ...+ .+. . ....+...|.+++.+. +++++.++.
T Consensus 78 d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~ 156 (582)
T PRK09231 78 EQDVVEYFVHHCPTEMTQLE-QWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHF 156 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeE
Confidence 0 00 000011111111 0111111000 0000 011 1 2346778888887775 799999999
Q ss_pred EEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 235 v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
++++..++ |.|.||..-+ ..+|+ -..+.|+.||+|||..+.+
T Consensus 157 v~~Li~~~-g~v~Gv~~~~---~~~g~-------~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 157 VLDILVDD-GHVRGLVAMN---MMEGT-------LVQIRANAVVMATGGAGRV 198 (582)
T ss_pred EEEEEEeC-CEEEEEEEEE---cCCCc-------EEEEECCEEEECCCCCcCC
Confidence 99999764 7888876532 02222 1579999999999999864
No 91
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.30 E-value=1.2e-10 Score=128.87 Aligned_cols=62 Identities=26% Similarity=0.197 Sum_probs=51.1
Q ss_pred cEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
...++...+.+.|.+.+++.|++|+.++.|+++... + .+.|++.+ | +++||.||+|+|+++
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t~~---------------g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG--Q-PAVVRTPD---------------G-QVTADKVVLALNAWM 237 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEeCC---------------c-EEECCEEEEcccccc
Confidence 456789999999999999999999999999998742 2 34577654 4 689999999999986
Q ss_pred c
Q 006466 286 S 286 (644)
Q Consensus 286 ~ 286 (644)
.
T Consensus 238 ~ 238 (460)
T TIGR03329 238 A 238 (460)
T ss_pred c
Confidence 3
No 92
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.29 E-value=3.9e-11 Score=131.13 Aligned_cols=190 Identities=23% Similarity=0.311 Sum_probs=103.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC------------hHHHHHHhhhhhhcCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE------------PRALNELLPQWKQEEA 175 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~------------~~~l~~l~~~~~~~~~ 175 (644)
||||||+|.|||+||+.|+++ |.+|+||||.+..|+.+. +++.+. .....+.+.++.....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~------G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA------GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG 74 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT------TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHhhh------cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence 899999999999999999999 999999999998776442 222111 0112222222211110
Q ss_pred Ce-e-------eeccCCcEEEeccCCccccCC-----------------------CCCCCCcEEEcHHHHHHHHHHHHHh
Q 006466 176 PI-R-------VPVSSDKFWFLTKDRAFSLPS-----------------------PFSNRGNYVISLSQLVRWLGGKAEE 224 (644)
Q Consensus 176 ~~-~-------~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~v~r~~l~~~L~~~a~~ 224 (644)
.. . .....+.+.|+.+. .+.+.. ..............+.+.|.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 75 GLNDPDLVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp T-S-HHHHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 00 0 00000011111100 000000 0000001123567889999999999
Q ss_pred cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCc---cc
Q 006466 225 LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE---KS 301 (644)
Q Consensus 225 ~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~---~~ 301 (644)
.|++|++++.+++++.++ ++|+||...+ ..+|+. .+|+|+.||+|+|.++. ++.+++.... ..
T Consensus 154 ~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~---~~~g~~-------~~i~A~aVIlAtGG~~~---~~~~~~~~~~~~~~~ 219 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLITED-GRVTGVVAEN---PADGEF-------VRIKAKAVILATGGFGG---ELLRQYYPPGPYAMT 219 (417)
T ss_dssp TTEEEEESEEEEEEEEET-TEEEEEEEEE---TTTCEE-------EEEEESEEEE----BGG---HHHHHH-GGGGSSSB
T ss_pred cCeeeeccceeeeEEEeC-CceeEEEEEE---CCCCeE-------EEEeeeEEEeccCcccc---ccccccccccccccc
Confidence 999999999999999975 7899999873 123332 57899999999999986 3332222111 02
Q ss_pred ccCcccceeEEEEEEeec
Q 006466 302 HAQHQTYALGIKEVWEID 319 (644)
Q Consensus 302 ~~~~~~~~~g~~~~~~~~ 319 (644)
...+...|.|+++.+.+.
T Consensus 220 ~~~~~~~Gdg~~ma~~aG 237 (417)
T PF00890_consen 220 TGPPGNTGDGIAMALRAG 237 (417)
T ss_dssp SSGTTTSSHHHHHHHHTT
T ss_pred cCCCCcccCchhhhhccC
Confidence 234455666666544443
No 93
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.29 E-value=3.7e-11 Score=136.83 Aligned_cols=192 Identities=19% Similarity=0.209 Sum_probs=110.9
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC-------hHHHHHHhhhhhhcC-
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-------PRALNELLPQWKQEE- 174 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~-------~~~l~~l~~~~~~~~- 174 (644)
+..++||||||+|.|||+||+.+++. |++|+||||....++++. +++.+. ....+..+.+.....
T Consensus 47 ~~~~~DVlVIG~G~AGl~AAl~Aae~------G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~ 120 (635)
T PLN00128 47 VDHTYDAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSD 120 (635)
T ss_pred eeeecCEEEECccHHHHHHHHHHHhc------CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhC
Confidence 34578999999999999999999998 999999999987665442 222211 111111111111100
Q ss_pred ---CC--ee--eeccCCcEEEeccCCccccCCCC------CCCCc------------EE-----EcHHHHHHHHHHHHHh
Q 006466 175 ---AP--IR--VPVSSDKFWFLTKDRAFSLPSPF------SNRGN------------YV-----ISLSQLVRWLGGKAEE 224 (644)
Q Consensus 175 ---~~--~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------------~~-----v~r~~l~~~L~~~a~~ 224 (644)
.+ .. .....+.+.|+.+ .++.|.... ...++ .+ .....+.+.|.+++++
T Consensus 121 ~~~d~~lv~~l~~~s~~~i~~L~~-~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~ 199 (635)
T PLN00128 121 WLGDQDAIQYMCREAPKAVIELEN-YGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK 199 (635)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHh-CCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh
Confidence 00 00 0000011111110 111111000 00000 00 1246788999999988
Q ss_pred cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccC
Q 006466 225 LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQ 304 (644)
Q Consensus 225 ~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~ 304 (644)
.||+|+.++.+++++.+++|+|.||...+ .++|+. ..+.|+.||+|||+.+.+-. . ....
T Consensus 200 ~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~~~-------~---tt~~ 259 (635)
T PLN00128 200 HNTQFFVEYFALDLIMDSDGACQGVIALN---MEDGTL-------HRFRAHSTILATGGYGRAYF-------S---ATSA 259 (635)
T ss_pred CCCEEEEeeEEEEEEEcCCCEEEEEEEEE---cCCCeE-------EEEEcCeEEECCCCCccccc-------c---ccCC
Confidence 99999999999999887568899987643 123332 57899999999999985321 1 1233
Q ss_pred cccceeEEEEEEeecCCC
Q 006466 305 HQTYALGIKEVWEIDEGK 322 (644)
Q Consensus 305 ~~~~~~g~~~~~~~~~~~ 322 (644)
+...|.|+.+.+......
T Consensus 260 ~~~tGDG~~mA~~aGA~l 277 (635)
T PLN00128 260 HTCTGDGNAMVARAGLPL 277 (635)
T ss_pred CCCCCHHHHHHHHcCCCC
Confidence 445677776665555443
No 94
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.28 E-value=3.2e-10 Score=122.48 Aligned_cols=203 Identities=21% Similarity=0.167 Sum_probs=108.6
Q ss_pred cEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
...++...+.+.|.+.++++| ..+..++.+..+..+ . .+++|.+.+ |. +.|+.||+|+|.+
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------GT-IEADKVVLAAGAW 211 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------cc-EEeCEEEEcCchH
Confidence 445677899999999999999 556668888888776 2 466788876 44 9999999999988
Q ss_pred CcchHHHHHHcC-CCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccC
Q 006466 285 GSLSEKLIKNFK-LREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 363 (644)
Q Consensus 285 s~l~~~l~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d 363 (644)
+. .+...++ +.. ...|.. +.................. ... .......|+.+..++.+.+|......
T Consensus 212 ~~---~l~~~~~~~~~--~~~p~~---~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~y~~~~~~g~~~~g~~~~~~ 278 (387)
T COG0665 212 AG---ELAATLGELPL--PLRPVR---GQALTTEPPEGLLADGLAP--VVL---VVDDGGGYIRPRGDGRLRVGGTDEEG 278 (387)
T ss_pred HH---HHHHhcCCCcC--cccccc---ceEEEecCCCccccccccc--eEE---EecCCceEEEEcCCCcEEEeeccccc
Confidence 53 4444444 221 011110 1000011111000000000 000 01123367888778888888665433
Q ss_pred C-CCCCCCcHH-----HHHHh-hcCCcchhcccCCceeeecceeeecCCcccCCccc-CCCeEEEcc-----CCcccCCC
Q 006466 364 Y-HNPFLNPYE-----EFQKF-KHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV-FPGGAIIGC-----AAGFLNVP 430 (644)
Q Consensus 364 ~-~~~~~~~~~-----~~~~~-~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~-~~~v~LiGD-----AA~~~~P~ 430 (644)
. ......+.+ ..... +..|.+..... .. .+.++. ..+ .++..+||- -.....-+
T Consensus 279 ~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~----~~------~w~g~~---~~t~pd~~P~iG~~~~~~~l~~a~G~ 345 (387)
T COG0665 279 GDDPSDPEREDLVIAELLRVARALLPGLADAGI----EA------AWAGLR---PPTTPDGLPVIGRAAPLPNLYVATGH 345 (387)
T ss_pred CCCCccccCcchhHHHHHHHHHHhCcccccccc----ce------eeeccc---cCCCCCCCceeCCCCCCCCEEEEecC
Confidence 1 111111122 22222 22344332211 11 112222 222 456666663 22233456
Q ss_pred CCcchHHHHHHHHHHHHHHhcc
Q 006466 431 KIKGTHTAMKSGMLAAEAGFGV 452 (644)
Q Consensus 431 ~g~G~~~A~~sa~~lA~~l~~~ 452 (644)
.+.|+.++-..|+++|+.|...
T Consensus 346 ~~~G~~~~p~~g~~lA~li~g~ 367 (387)
T COG0665 346 GGHGFTLAPALGRLLADLILGG 367 (387)
T ss_pred CCcChhhccHHHHHHHHHHcCC
Confidence 7889999999999999998764
No 95
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.28 E-value=2.8e-11 Score=134.22 Aligned_cols=149 Identities=17% Similarity=0.281 Sum_probs=91.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC-CCCCcc-c-ccCccChHHHHHHhhhhhhcCCCeeeecc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHI-I-SGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~-~~g~~~-~-~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (644)
..|||||||||+||++||+.+++. |.+|+|||+.. .+|... . +-+.+....+ .......+.......+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~l---vrEidalGg~~g~~~d 73 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHL---VREIDALGGEMGKAID 73 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc------CCcEEEEecccccccccCCccccccchhhHH---HHHHHhcCCHHHHHHh
Confidence 469999999999999999999999 99999999984 454311 0 0111111111 1111111100000000
Q ss_pred C--CcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccC
Q 006466 183 S--DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (644)
Q Consensus 183 ~--~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~ 259 (644)
. ..+..+....+ |. .......+++..+.+.|.+.+++. |++++ ...|+++..++ +.|.+|.+.+
T Consensus 74 ~~giq~r~ln~skG---pA--V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~t~d------ 140 (618)
T PRK05192 74 KTGIQFRMLNTSKG---PA--VRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVVTQD------ 140 (618)
T ss_pred hccCceeecccCCC---Cc--eeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEEECC------
Confidence 0 01111111100 00 000123578888899998888866 78986 55688887765 6788999876
Q ss_pred CCcccccccceEEEcCEEEEecCCCC
Q 006466 260 GSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
|..+.|+.||+|||.++
T Consensus 141 ---------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 141 ---------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ---------CCEEECCEEEEeeCcch
Confidence 67899999999999764
No 96
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.27 E-value=5.7e-11 Score=132.21 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=93.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCccC----h-HHHHHHhhhhhhcCC----C
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P-RALNELLPQWKQEEA----P 176 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~----~-~~l~~l~~~~~~~~~----~ 176 (644)
++||||||+|+|||+||+.+++. |. |+||||.+..++++ .+++.+. + ...+..+.++..... +
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~------G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~ 74 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ------GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR 74 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC------CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence 47999999999999999999998 87 99999997666544 2222221 0 111112222111100 0
Q ss_pred --eee--eccCCcEEEeccCCccccCC----------C-CCCC-CcEEE---cHHHHHHHHHHHHHh-cCCEEecCceEE
Q 006466 177 --IRV--PVSSDKFWFLTKDRAFSLPS----------P-FSNR-GNYVI---SLSQLVRWLGGKAEE-LGVEIYPGFAAS 236 (644)
Q Consensus 177 --~~~--~~~~~~~~~~~~~~~~~~~~----------~-~~~~-~~~~v---~r~~l~~~L~~~a~~-~Gv~i~~g~~v~ 236 (644)
... ....+.+.|+.+ .++.+.. . -+.. ..+.+ ....+.+.|.+.+++ .||+|++++.|+
T Consensus 75 ~~v~~~~~~~~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~ 153 (488)
T TIGR00551 75 EAVEFVVSDARSAVQWLVD-QGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL 153 (488)
T ss_pred HHHHHHHHhHHHHHHHHHH-cCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence 000 000011111110 1111110 0 0000 01111 236788999999987 689999999999
Q ss_pred EEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcch
Q 006466 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 237 ~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~ 288 (644)
+++.++ +.+.+|.+.+. +. ...+.|+.||+|+|.++.+.
T Consensus 154 ~l~~~~-g~v~Gv~~~~~-----~~-------~~~i~A~~VVlAtGG~~~~~ 192 (488)
T TIGR00551 154 DLLIET-GRVVGVWVWNR-----ET-------VETCHADAVVLATGGAGKLY 192 (488)
T ss_pred eeeccC-CEEEEEEEEEC-----Cc-------EEEEEcCEEEECCCcccCCC
Confidence 998764 67888876541 11 14689999999999998643
No 97
>PRK07121 hypothetical protein; Validated
Probab=99.27 E-value=2.7e-11 Score=135.05 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEc-CEEEEecCCCCcchH
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSE 289 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a-~~vV~A~G~~s~l~~ 289 (644)
...+.+.|.+.+++.|++|+++++|++++.+++|+|++|...+ +|+ ...++| +.||+|+|..+...+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~N~e 243 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGE-------TVAIRARKGVVLAAGGFAMNRE 243 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCc-------EEEEEeCCEEEECCCCcCcCHH
Confidence 4568889999999999999999999999987667898998743 222 246889 999999999998444
Q ss_pred HHHHHcCCCcc---cccCcccceeEEEEEEeecC
Q 006466 290 KLIKNFKLREK---SHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 290 ~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 320 (644)
|.+++..... ....+...|.|+++...+..
T Consensus 244 -m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa 276 (492)
T PRK07121 244 -MVARYAPAYAGGLPLGTTGDDGSGIRLGQSAGG 276 (492)
T ss_pred -HHHHhCCcccCCcCCCCCCCccHHHHHHHHhCC
Confidence 4444432210 11233456777766555443
No 98
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=1.1e-11 Score=139.83 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=107.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC---------hHHHHHHhhhhhhcCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE---------PRALNELLPQWKQEEA 175 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~---------~~~l~~l~~~~~~~~~ 175 (644)
+++||||||+|.|||+||+.+++. |++|+||||.+..++++. +++.+. ....+.++.+......
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~------G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~ 77 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA------GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGD 77 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC------CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhc
Confidence 578999999999999999999998 999999999976655432 222221 0111111111110000
Q ss_pred C------ee--eeccCCcEEEeccCCccccCCC-------------CCCCCcEEE--cHHHHHHHHHHHHHhcCCEEecC
Q 006466 176 P------IR--VPVSSDKFWFLTKDRAFSLPSP-------------FSNRGNYVI--SLSQLVRWLGGKAEELGVEIYPG 232 (644)
Q Consensus 176 ~------~~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~v--~r~~l~~~L~~~a~~~Gv~i~~g 232 (644)
. +. .....+.+.|+.. .++.|... ......+.. ....+.+.|.+.+++.||+++++
T Consensus 78 ~~~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~ 156 (566)
T PRK06452 78 YLVDQDAAELLSNKSGEIVMLLER-WGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNE 156 (566)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-CCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 0 00 0000111111110 11111100 000000111 23567888988888889999999
Q ss_pred ceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEE
Q 006466 233 FAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGI 312 (644)
Q Consensus 233 ~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~ 312 (644)
+.+++++.++ |+|+||...+. .+|+ -..+.|+.||+|+|+.+.+.+ .. ...+...|.|+
T Consensus 157 ~~~~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~l~~-------~~---~~~~~~tGDGi 215 (566)
T PRK06452 157 WFSLDLVTDN-KKVVGIVAMQM---KTLT-------PFFFKTKAVVLATGGMGMLYR-------HT---TNSYINTGDGF 215 (566)
T ss_pred cEEEEEEEEC-CEEEEEEEEEC---CCCe-------EEEEEeCeEEECCCccccccC-------CC---CCCCCcChHHH
Confidence 9999999864 88999987541 1222 147899999999999984321 11 23345567777
Q ss_pred EEEEeecCC
Q 006466 313 KEVWEIDEG 321 (644)
Q Consensus 313 ~~~~~~~~~ 321 (644)
.+.+.+...
T Consensus 216 ~mA~~aGA~ 224 (566)
T PRK06452 216 GIALRAGAA 224 (566)
T ss_pred HHHHHcCCc
Confidence 665555443
No 99
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.26 E-value=1e-10 Score=130.55 Aligned_cols=197 Identities=19% Similarity=0.244 Sum_probs=113.3
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCccC---hHH---------HHHHhhhh
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE---PRA---------LNELLPQW 170 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~---~~~---------l~~l~~~~ 170 (644)
+..++||||||+|.||++||+.+++. |++|+||||.+..|+++ .+++.+. .+. ..+++.++
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~------Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~ 131 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDA------GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEET 131 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHC------CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHH
Confidence 34579999999999999999999999 99999999999887754 2332221 110 11223222
Q ss_pred hhcCC----C--eee--eccCCcEEEeccCCccccC-----CCCCCCCcE-----EEcHHHHHHHHHHHHHhcCCEEecC
Q 006466 171 KQEEA----P--IRV--PVSSDKFWFLTKDRAFSLP-----SPFSNRGNY-----VISLSQLVRWLGGKAEELGVEIYPG 232 (644)
Q Consensus 171 ~~~~~----~--~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~v~r~~l~~~L~~~a~~~Gv~i~~g 232 (644)
..... + +.. ....+.+.|+.+ .++.++ ........+ ......+...|.+.+++.|++|+++
T Consensus 132 ~~~~~~~~d~~l~~~~~~~s~~~i~wl~~-~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~ 210 (506)
T PRK06481 132 LKGGGGTNDKALLRYFVDNSASAIDWLDS-MGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVN 210 (506)
T ss_pred HHhcCCCCCHHHHHHHHhccHHHHHHHHH-cCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeC
Confidence 11100 0 000 001111122221 111111 000000000 0123467888999999999999999
Q ss_pred ceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcc---cccCcccce
Q 006466 233 FAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYA 309 (644)
Q Consensus 233 ~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~---~~~~~~~~~ 309 (644)
+.|+++..++ |+|++|.+.. .+|+ ..++.||.||+|+|.++...+.+ +++..... ....+...|
T Consensus 211 t~v~~l~~~~-g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n~~m~-~~~~p~~~~~~~~~~~g~tG 277 (506)
T PRK06481 211 ADVTKITEKD-GKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGANKDMI-AKYRPDLKGYVTTNQEGSTG 277 (506)
T ss_pred CeeEEEEecC-CEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccCHHHH-HHhCccccCCccCCCCCCCh
Confidence 9999998654 7788887653 1222 24699999999999998855444 44433210 112334556
Q ss_pred eEEEEEEeecC
Q 006466 310 LGIKEVWEIDE 320 (644)
Q Consensus 310 ~g~~~~~~~~~ 320 (644)
.|+++...+..
T Consensus 278 dGi~ma~~aGA 288 (506)
T PRK06481 278 DGIKMIEKLGG 288 (506)
T ss_pred HHHHHHHHcCC
Confidence 66665554443
No 100
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.26 E-value=1.4e-10 Score=131.94 Aligned_cols=166 Identities=20% Similarity=0.276 Sum_probs=97.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC-------hHHHHHHhhhhhhcCC-
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-------PRALNELLPQWKQEEA- 175 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~-------~~~l~~l~~~~~~~~~- 175 (644)
..++||||||||.|||+||+.+++. |++|+||||....++++. +++.+. ....+..+.+......
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~ 100 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVEL------GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDW 100 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc------CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999998 999999999987666542 222221 1111111111100000
Q ss_pred ---C--ee--eeccCCcEEEeccCCccccCC---------CCC--------C----CCcEEE--cHHHHHHHHHHHHHhc
Q 006466 176 ---P--IR--VPVSSDKFWFLTKDRAFSLPS---------PFS--------N----RGNYVI--SLSQLVRWLGGKAEEL 225 (644)
Q Consensus 176 ---~--~~--~~~~~~~~~~~~~~~~~~~~~---------~~~--------~----~~~~~v--~r~~l~~~L~~~a~~~ 225 (644)
+ .. .....+.+.|+.+ .++.|.. ... . ...+.. ....+.+.|.+++++.
T Consensus 101 ~~d~~lv~~l~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~ 179 (617)
T PTZ00139 101 LGDQDAIQYMCREAPQAVLELES-YGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY 179 (617)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-cCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC
Confidence 0 00 0000000111110 0111100 000 0 000011 2357889999999999
Q ss_pred CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 226 Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
||+|+.++.+++++.+++|+|.||...+ .++|+ -..+.|+.||+|||+.+.+
T Consensus 180 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~-------~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 180 DCNFFIEYFALDLIMDEDGECRGVIAMS---MEDGS-------IHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred CCEEEeceEEEEEEECCCCEEEEEEEEE---CCCCe-------EEEEECCcEEEeCCCCccc
Confidence 9999999999999985568899987633 12333 2578999999999998753
No 101
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.26 E-value=2.3e-10 Score=131.01 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l 291 (644)
..+...|.+.+++.||+|+.++.+++++.++ |+|.||...+ ..+|+. ..+.|+.||+|||..+.+-.
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~---~~~G~~-------~~i~AkaVVLATGG~g~~y~-- 224 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRC---LITGEL-------RAYVAKATLIATGGYGRIYK-- 224 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCcccCCCC--
Confidence 4566778888889999999999999999764 7888887653 123332 46889999999999886421
Q ss_pred HHHcCCCcccccCcccceeEEEEEEeec
Q 006466 292 IKNFKLREKSHAQHQTYALGIKEVWEID 319 (644)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (644)
.. ...+...|.|+.+.++..
T Consensus 225 -----~t---tn~~~~tGdG~~mA~~aG 244 (657)
T PRK08626 225 -----VT---TNAVICEGIGAAIALETG 244 (657)
T ss_pred -----CC---CCCCCcChHHHHHHHHcC
Confidence 11 223445566665555444
No 102
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=1.6e-10 Score=130.97 Aligned_cols=189 Identities=18% Similarity=0.227 Sum_probs=108.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCcc----C---hHHHHHHhhhhhhcC---
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVF----E---PRALNELLPQWKQEE--- 174 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i----~---~~~l~~l~~~~~~~~--- 174 (644)
.++||||||+|.|||+||+.+++. |++|+||||....++++. +++.+ . ....+.++.+.....
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~ 79 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS------GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence 368999999999999999999998 999999999976655432 22222 1 111111221111100
Q ss_pred -CC--ee--eeccCCcEEEeccCCccccCCC---------CC-----------CCCcEEE--cHHHHHHHHHHHHHhcCC
Q 006466 175 -AP--IR--VPVSSDKFWFLTKDRAFSLPSP---------FS-----------NRGNYVI--SLSQLVRWLGGKAEELGV 227 (644)
Q Consensus 175 -~~--~~--~~~~~~~~~~~~~~~~~~~~~~---------~~-----------~~~~~~v--~r~~l~~~L~~~a~~~Gv 227 (644)
.+ +. .....+.+.|+. ..++.|... .. ....+.. ....|...|.+++++.|+
T Consensus 80 ~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi 158 (588)
T PRK08958 80 GDQDAIEYMCKTGPEAILELE-HMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT 158 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence 00 00 000011111111 011111100 00 0000011 235788889998888999
Q ss_pred EEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCccc
Q 006466 228 EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQT 307 (644)
Q Consensus 228 ~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~ 307 (644)
+++.++.+++++.+++|+|+||...+ ..+|+ -..+.|+.||+|||..+.+-. . ....+..
T Consensus 159 ~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~-------~~~i~AkaVILATGG~~~~~~-------~---~~~~~~~ 218 (588)
T PRK08958 159 TIFSEWYALDLVKNQDGAVVGCTAIC---IETGE-------VVYFKARATVLATGGAGRIYQ-------S---TTNAHIN 218 (588)
T ss_pred EEEeCcEEEEEEECCCCEEEEEEEEE---cCCCc-------EEEEEcCeEEECCCCcccccc-------c---ccCCCCC
Confidence 99999999999987668999998643 12333 256899999999999986322 1 1223445
Q ss_pred ceeEEEEEEeecCC
Q 006466 308 YALGIKEVWEIDEG 321 (644)
Q Consensus 308 ~~~g~~~~~~~~~~ 321 (644)
.|.|+.+.+.....
T Consensus 219 tGdG~~mA~~aGA~ 232 (588)
T PRK08958 219 TGDGVGMALRAGVP 232 (588)
T ss_pred CcHHHHHHHHcCCc
Confidence 66666655544443
No 103
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.24 E-value=3.6e-09 Score=118.27 Aligned_cols=65 Identities=20% Similarity=0.173 Sum_probs=50.0
Q ss_pred EcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 209 v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
++...+...|.+.+++.|++++.+++|+++..++ + .++|.+.+. .+|+ ..+++||.||.|+|.++
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~~---~~g~-------~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARREN-G-LWHVTLEDT---ATGK-------RYTVRARALVNAAGPWV 216 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C-EEEEEEEEc---CCCC-------EEEEEcCEEEECCCccH
Confidence 5678888888889999999999999999998764 3 345665430 1122 24799999999999986
No 104
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.23 E-value=2.3e-10 Score=127.75 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=91.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC-----hHHHHHHhhhhhhcCCC----
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEAP---- 176 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~~---- 176 (644)
++||||||+|.|||+||+.+++ |.+|+||||.+..++++. +++.+. ....+..+.+.......
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~ 75 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNE 75 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCH
Confidence 5799999999999999999864 889999999987776552 333221 11122222221111000
Q ss_pred --eeeec--cCCcEEEeccCCccccCC----------C-CCCC-CcEE----EcHHHHHHHHHHHHHhcCCEEecCceEE
Q 006466 177 --IRVPV--SSDKFWFLTKDRAFSLPS----------P-FSNR-GNYV----ISLSQLVRWLGGKAEELGVEIYPGFAAS 236 (644)
Q Consensus 177 --~~~~~--~~~~~~~~~~~~~~~~~~----------~-~~~~-~~~~----v~r~~l~~~L~~~a~~~Gv~i~~g~~v~ 236 (644)
+...+ ..+.+.++.. .++.|+. . .+.. ..+. .....+.+.|.+.++ .||+|++++.++
T Consensus 76 ~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~ 153 (510)
T PRK08071 76 RAVRYLVEEGPKEIQELIE-NGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVI 153 (510)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhh
Confidence 00000 0001111110 1111110 0 0000 0000 123457788888776 689999999999
Q ss_pred EEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 237 ~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
++..++ +++.||.+.+ .+|+. ..+.||.||+|+|..+.
T Consensus 154 ~Li~~~-g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 154 DLIIEN-GRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGG 191 (510)
T ss_pred heeecC-CEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCcc
Confidence 998764 7888887754 23331 46899999999999885
No 105
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.23 E-value=3.8e-09 Score=120.54 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=54.8
Q ss_pred EEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcC-CCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 208 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~-~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
.++...+...|.+.+++.|++++.++.|+++..++ ++.+++|++.|. .+|+ ..+++||.||.|+|.++.
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhHH
Confidence 46889999999999999999999999999998764 467778776431 1111 236899999999999963
No 106
>PRK08275 putative oxidoreductase; Provisional
Probab=99.23 E-value=1.1e-10 Score=131.75 Aligned_cols=170 Identities=24% Similarity=0.291 Sum_probs=96.2
Q ss_pred cccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccc-c-CccCh------HHHHHHhhhhhhcC
Q 006466 103 RESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS-G-NVFEP------RALNELLPQWKQEE 174 (644)
Q Consensus 103 ~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~-g-~~i~~------~~l~~l~~~~~~~~ 174 (644)
.+.+++||||||||.|||+||+.+++. ++|.+|+||||.+..++...+ + +.+.. ......+.+.....
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~ 80 (554)
T PRK08275 5 TQEVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIAN 80 (554)
T ss_pred ceeEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhc
Confidence 345679999999999999999999986 236899999999864332221 1 11100 11111111111000
Q ss_pred CCe------eeec--cCCcEEEeccCCccccCC---------CCCCCCcEE---EcHHHHHHHHHHHHHhcCCEEecCce
Q 006466 175 API------RVPV--SSDKFWFLTKDRAFSLPS---------PFSNRGNYV---ISLSQLVRWLGGKAEELGVEIYPGFA 234 (644)
Q Consensus 175 ~~~------~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---v~r~~l~~~L~~~a~~~Gv~i~~g~~ 234 (644)
... ...+ ..+.+.|+. ..++.+.. .....+.+. -....+.+.|.+++++.|++|++++.
T Consensus 81 ~~~~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~ 159 (554)
T PRK08275 81 DGIVDQKAVYAYAEHSFETIQQLD-RWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIM 159 (554)
T ss_pred CCCccHHHHHHHHHhhHHHHHHHH-HCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceE
Confidence 000 0000 001111111 00111100 000001111 12346788999999999999999999
Q ss_pred EEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 235 v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
|++++.++++++.||...+. .+|+ -..+.|+.||+|+|+.+.+
T Consensus 160 v~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 160 ATRLLTDADGRVAGALGFDC---RTGE-------FLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred EEEEEEcCCCeEEEEEEEec---CCCc-------EEEEECCEEEECCCCcccc
Confidence 99999875578888875431 2232 1468999999999998754
No 107
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2.3e-10 Score=130.03 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l 291 (644)
..+...|.+.+++.||+|++++.+++++.+++|+|.||...+ .++|. -..+.|+.||+|+|..+.+-
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~-------~~~i~AkaVVLATGG~~~~~--- 215 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGT-------LHRFRAHMVVLATGGYGRAY--- 215 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCc-------EEEEEcCEEEECCCCCcccc---
Confidence 568889999999999999999999999987667899987632 12333 15789999999999988531
Q ss_pred HHHcCCCcccccCcccceeEEEEEEeecC
Q 006466 292 IKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (644)
... ...+...|.|+.+.+....
T Consensus 216 ----~~~---t~~~~~tGdGi~ma~~aGA 237 (598)
T PRK09078 216 ----FSA---TSAHTCTGDGGGMVLRAGL 237 (598)
T ss_pred ----Ccc---CCCCCcccHHHHHHHHcCC
Confidence 111 2233455666665554443
No 108
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.23 E-value=3.8e-10 Score=126.90 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=92.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCccC-----hHHHHHHhhhhhhcCC---
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEA--- 175 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~~--- 175 (644)
..++||||||+|.|||+||+.++ . |.+|+||||.+..++++ .+++.+. .......+.++.....
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~------G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~ 79 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S------HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLC 79 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c------CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCC
Confidence 45789999999999999999985 4 89999999998776654 2322221 1111112222111100
Q ss_pred -C--eeee--ccCCcEEEeccCCccccC----------CCCCCC-CcEEE---cHHHHHHHHHHHHHhc-CCEEecCceE
Q 006466 176 -P--IRVP--VSSDKFWFLTKDRAFSLP----------SPFSNR-GNYVI---SLSQLVRWLGGKAEEL-GVEIYPGFAA 235 (644)
Q Consensus 176 -~--~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~v---~r~~l~~~L~~~a~~~-Gv~i~~g~~v 235 (644)
+ +... ...+.+.|+.+ .++.|. ...+.. ..+.. ....+...|.+.+++. ||+|++++.+
T Consensus 80 d~~lv~~~~~~s~~~i~wL~~-~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v 158 (553)
T PRK07395 80 DPEAVRFLVEQAPEAIASLVE-MGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALA 158 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-cCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcCh
Confidence 0 0000 00000111110 001110 000000 01111 2356788888888754 8999999999
Q ss_pred EEEEEcC-CCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 236 SEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 236 ~~v~~~~-~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
++++.++ +|+|.||.+.+ +|. -..+.|+.||+|+|..+.
T Consensus 159 ~~Li~~~~~g~v~Gv~~~~-----~g~-------~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 159 LSLWLEPETGRCQGISLLY-----QGQ-------ITWLRAGAVILATGGGGQ 198 (553)
T ss_pred hhheecCCCCEEEEEEEEE-----CCe-------EEEEEcCEEEEcCCCCcc
Confidence 9998874 47888987642 222 145899999999999764
No 109
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.23 E-value=1e-09 Score=119.02 Aligned_cols=167 Identities=23% Similarity=0.291 Sum_probs=100.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc--cccCcc------ChHHH--------HHHhhhh
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI--ISGNVF------EPRAL--------NELLPQW 170 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~--~~g~~i------~~~~l--------~~l~~~~ 170 (644)
.+||+|||||++|+++|+.|+++ .+|.+|+||||...++... .+++.+ .+..+ .++++.|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAF 77 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999986 4589999999987554322 222222 11111 1122222
Q ss_pred hhc-CCCee------eeccCC-----------------cEEEeccCCcc-ccCC-----CCCCCCcEEEcHHHHHHHHHH
Q 006466 171 KQE-EAPIR------VPVSSD-----------------KFWFLTKDRAF-SLPS-----PFSNRGNYVISLSQLVRWLGG 220 (644)
Q Consensus 171 ~~~-~~~~~------~~~~~~-----------------~~~~~~~~~~~-~~~~-----~~~~~~~~~v~r~~l~~~L~~ 220 (644)
... ..+.. ...+.+ ...+++...-. ..|. .........++...+.+.|.+
T Consensus 78 ~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~ 157 (393)
T PRK11728 78 CDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAE 157 (393)
T ss_pred HHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHH
Confidence 211 11110 000000 01111110000 0111 111223456788999999999
Q ss_pred HHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 221 KAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 221 ~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
.+++.|++++++++|+++..+++ .+ .|.+.+ | ++.||.||+|+|.++. .+.+.+++.
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~-~~-~V~~~~---------------g-~i~ad~vV~A~G~~s~---~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHAN-GV-VVRTTQ---------------G-EYEARTLINCAGLMSD---RLAKMAGLE 214 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCC-eE-EEEECC---------------C-EEEeCEEEECCCcchH---HHHHHhCCC
Confidence 99999999999999999987653 33 566654 4 6999999999999873 344455654
No 110
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=2.6e-10 Score=129.40 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
..|.+.|.+.+.+.|++++.++.+++++.+++|+|.||.+.+. .+|. -..+.|+.||+|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGD-------VYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCe-------EEEEECCeEEECCCCcccc
Confidence 5688899999999999999999999999876688989976431 1222 1468999999999998864
No 111
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.22 E-value=2.5e-10 Score=128.42 Aligned_cols=169 Identities=23% Similarity=0.215 Sum_probs=97.9
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC-----hHHHHHHhhhhhhcCC--
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEA-- 175 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~-----~~~l~~l~~~~~~~~~-- 175 (644)
..+++||||||+|.|||+||+.+++. |.+|+||||....++++. +++.+. ....+..+.++.....
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~------G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~ 86 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA------GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGL 86 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCC
Confidence 34579999999999999999999998 999999999987655432 222211 0111111111111000
Q ss_pred --C--eeee--ccCCcEEEeccCCccccCC-----------CCCCCC-cEEE----cHHHHHHHHHHHHHhcCCEEecCc
Q 006466 176 --P--IRVP--VSSDKFWFLTKDRAFSLPS-----------PFSNRG-NYVI----SLSQLVRWLGGKAEELGVEIYPGF 233 (644)
Q Consensus 176 --~--~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~v----~r~~l~~~L~~~a~~~Gv~i~~g~ 233 (644)
+ +... ...+.+.|+.. .++.|+. ..+... .+.. ....+.+.|.+++++.||+++.++
T Consensus 87 ~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~ 165 (541)
T PRK07804 87 CDPDAVRSLVAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHA 165 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECe
Confidence 0 0000 00000111110 1111110 000000 0001 245788899999999999999999
Q ss_pred eEEEEEEcCCCcEEEEEeCcCccccCCCcccccccc-eEEEcCEEEEecCCCCcc
Q 006466 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGSL 287 (644)
Q Consensus 234 ~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g-~~i~a~~vV~A~G~~s~l 287 (644)
.|++++.+++|+|.||.+.+.. .+. .++ ..+.|+.||+|||..+.+
T Consensus 166 ~v~~Li~~~~g~v~Gv~~~~~~---~~~-----~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 166 LALDLLTDGTGAVAGVTLHVLG---EGS-----PDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred EeeeeEEcCCCeEEEEEEEecc---CCC-----CCcEEEEEcCeEEECCCCCCCC
Confidence 9999998766788888765311 000 012 468999999999999864
No 112
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.22 E-value=1e-10 Score=131.57 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEc-CEEEEecCCCCcchHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSEK 290 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a-~~vV~A~G~~s~l~~~ 290 (644)
..|...|.+.+++.||+|++++++++++.+ +|+|+||...+ +|. ...+.| +.||+|+|.++... +
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n~-e 282 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHDM-E 282 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCccccH-H
Confidence 456677888899999999999999999875 48899997643 121 145667 68999999999854 4
Q ss_pred HHHHcCCCc----ccccCcccceeEEEEEEeecCC
Q 006466 291 LIKNFKLRE----KSHAQHQTYALGIKEVWEIDEG 321 (644)
Q Consensus 291 l~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~ 321 (644)
|.++|.... .....+...|.|+++...+...
T Consensus 283 m~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~ 317 (564)
T PRK12845 283 MRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAA 317 (564)
T ss_pred HHHHhCCCccccccccCCCCCCCHHHHHHHHcCCC
Confidence 445554210 0223455667777766655544
No 113
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.21 E-value=2.4e-11 Score=118.89 Aligned_cols=137 Identities=27% Similarity=0.321 Sum_probs=79.8
Q ss_pred EEECCCHHHHHHHHHHHhhchhcCCCCe-EEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEEe
Q 006466 111 VIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (644)
Q Consensus 111 vIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (644)
+||||||+||++|+.|.+. |++ |+||||++.+|+....-. .......+.... ....+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~------g~~~v~v~e~~~~~Gg~w~~~~------------~~~~~~~~~~~~-~~~~~~-- 59 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER------GIDPVVVLERNDRPGGVWRRYY------------SYTRLHSPSFFS-SDFGLP-- 59 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT------T---EEEEESSSSSTTHHHCH-------------TTTT-BSSSCCT-GGSS----
T ss_pred CEECcCHHHHHHHHHHHhC------CCCcEEEEeCCCCCCCeeEEeC------------CCCccccCcccc-ccccCC--
Confidence 6999999999999999999 999 999999999887432100 000000000000 000000
Q ss_pred ccCCccccCC-CCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccccc
Q 006466 190 TKDRAFSLPS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (644)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~ 268 (644)
.-..+.+.. +..........+.++.++|.+.+++.+++++++++|+++..++++ +.|++.+
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~--------------- 121 (203)
T PF13738_consen 60 -DFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD--------------- 121 (203)
T ss_dssp -CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT---------------
T ss_pred -cccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe---------------
Confidence 000000000 000001222678899999999999999999999999999999866 5688876
Q ss_pred ceEEEcCEEEEecCCCCc
Q 006466 269 GVELRGRITLLAEGCRGS 286 (644)
Q Consensus 269 g~~i~a~~vV~A~G~~s~ 286 (644)
+.+++|+.||+|+|..+.
T Consensus 122 ~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 122 GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp S-EEEEEEEEE---SSCS
T ss_pred cceeeeeeEEEeeeccCC
Confidence 568999999999997653
No 114
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.20 E-value=1.5e-10 Score=122.24 Aligned_cols=143 Identities=20% Similarity=0.296 Sum_probs=89.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEE-cCCCCCCCcccccCc---cChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVV-EKGAEVGAHIISGNV---FEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~vi-Ek~~~~g~~~~~g~~---i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
||+|||||.||+.||+.+++. |.+|+|+ ++.+.++... |... +....+.+ ++...+..+....+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~------G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~---Eidalgg~m~~~aD~~ 70 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM------GAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVR---EIDALGGLMGRAADET 70 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------T--EEEEES-GGGTT--S-SSSEEESTTHHHHHH---HHHHTT-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEeeccccccccc-chhhhccccccchhH---HHhhhhhHHHHHHhHh
Confidence 899999999999999999999 9999999 5555555422 2211 22222222 2222221111111111
Q ss_pred c--EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 185 K--FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
. +..+...++... ....+.++|..+.+++.+.+++ .+++|+ ..+|+++..++ +.|+||.+.+
T Consensus 71 ~i~~~~lN~skGpav-----~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~~~-------- 135 (392)
T PF01134_consen 71 GIHFRMLNRSKGPAV-----HALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVTKD-------- 135 (392)
T ss_dssp EEEEEEESTTS-GGC-----TEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEETT--------
T ss_pred hhhhhcccccCCCCc-----cchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEeCC--------
Confidence 2 223322222111 1114689999999999999998 468887 56899998876 7899999987
Q ss_pred cccccccceEEEcCEEEEecCC
Q 006466 262 KKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
|..+.+|.||+|||.
T Consensus 136 -------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 136 -------GEEIEADAVVLATGT 150 (392)
T ss_dssp -------SEEEEECEEEE-TTT
T ss_pred -------CCEEecCEEEEeccc
Confidence 789999999999998
No 115
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.19 E-value=3.1e-10 Score=128.56 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcC-EEEEecCCCCcchHHH
Q 006466 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 291 (644)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~-~vV~A~G~~s~l~~~l 291 (644)
.+...|.+.+++.|++|++++.+++++.+++|+|+||.... +|+ ...++|+ .||+|+|.++... +|
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~-------~~~i~a~~aVilAtGGf~~N~-em 280 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGR-------TLRIGARRGVILATGGFDHDM-DW 280 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCc-------EEEEEeceeEEEecCcccCCH-HH
Confidence 35556778888899999999999999998778999998743 332 2568997 6999999999844 45
Q ss_pred HHHcCCCc----ccccCcccceeEEEEEEeecCC
Q 006466 292 IKNFKLRE----KSHAQHQTYALGIKEVWEIDEG 321 (644)
Q Consensus 292 ~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~ 321 (644)
.+++.... .....+...|.|+++...+...
T Consensus 281 ~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~ 314 (584)
T PRK12835 281 RKEYLPELERKDWSFGNPANTGDGIRAGEKVGAA 314 (584)
T ss_pred HHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCC
Confidence 55553321 0122345667777766555543
No 116
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.19 E-value=1.8e-08 Score=112.69 Aligned_cols=65 Identities=22% Similarity=0.172 Sum_probs=51.8
Q ss_pred EEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 208 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.++...+...|...++++|++++.+++|+++..++ + .++|.+.+ ..|+ ..+++|+.||.|+|.++
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~----~~g~-------~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG-G-LWRVETRD----ADGE-------TRTVRARALVNAAGPWV 215 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-C-EEEEEEEe----CCCC-------EEEEEecEEEECCCccH
Confidence 46788999999999999999999999999998764 3 34676654 1122 25799999999999986
No 117
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=3.2e-10 Score=129.58 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 215 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 215 ~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
.+.|.+.+++.||+|++++.+++++.++ |+|+||.+.+. .+|.. ..+.||.||+|+|+.+.+
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence 3667777888899999999999998765 78999987541 12321 468999999999998863
No 118
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.17 E-value=1e-10 Score=130.75 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcC-EEEEecCCCCcchHH
Q 006466 213 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (644)
Q Consensus 213 ~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~-~vV~A~G~~s~l~~~ 290 (644)
.+...|.+.+.+ .|++|+++++|++++.+ ++.|+||.... +|+ ...++|+ .||+|+|..+... .
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-----~g~-------~~~i~A~k~VIlAtGG~~~n~-~ 239 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER-----GGE-------RRRVRARRGVLLAAGGFEQND-D 239 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-----CCc-------EEEEEeCceEEEeCCCccCCH-H
Confidence 455566666655 48999999999999887 47898987642 232 2578996 8999999998854 5
Q ss_pred HHHHcCCCc---ccccCcccceeEEEEEEeecCC
Q 006466 291 LIKNFKLRE---KSHAQHQTYALGIKEVWEIDEG 321 (644)
Q Consensus 291 l~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ 321 (644)
|.+.|..+. .....+...|.|+++...+...
T Consensus 240 m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~ 273 (513)
T PRK12837 240 MRARYGVPGSARDTMGGPGNTGLAHQAAIAVGAD 273 (513)
T ss_pred HHHHhccccccCCCCCCCCCCcHHHHHHHHcCCC
Confidence 555664221 1233455678888776655544
No 119
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=1.1e-10 Score=131.61 Aligned_cols=165 Identities=22% Similarity=0.280 Sum_probs=93.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC-CCCcc-cccCccC-----hHHHHHHhhhhhhcCC-
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHI-ISGNVFE-----PRALNELLPQWKQEEA- 175 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~~- 175 (644)
+..++||||||+|.|||+||+.+ +. |++|+||||.+. .++.+ .+++.+. .....+.+.++.....
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~A-~~------G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~ 76 (543)
T PRK06263 4 EIMITDVLIIGSGGAGARAAIEA-ER------GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAY 76 (543)
T ss_pred ceeccCEEEECccHHHHHHHHHH-hc------CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 45678999999999999999999 77 999999999864 34322 2222221 1112222221111000
Q ss_pred ---C--eee--eccCCcEEEeccCCccccCCC------CCCCCc-------EE--EcHHHHHHHHHHHHHhcCCEEecCc
Q 006466 176 ---P--IRV--PVSSDKFWFLTKDRAFSLPSP------FSNRGN-------YV--ISLSQLVRWLGGKAEELGVEIYPGF 233 (644)
Q Consensus 176 ---~--~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------~~--v~r~~l~~~L~~~a~~~Gv~i~~g~ 233 (644)
+ +.. ....+.+.|+.. .++.|... ....++ +. .....+...|.+.+++.||+|++++
T Consensus 77 ~~d~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t 155 (543)
T PRK06263 77 LNDPKLVEILVKEAPKRLKDLEK-FGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEV 155 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCe
Confidence 0 000 000011111110 01111000 000000 00 1235678889988888999999999
Q ss_pred eEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 234 ~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
.+++++.+++++|+||...+. ++|+ -..+.|+.||+|+|..+.
T Consensus 156 ~v~~Li~~~~~~v~Gv~~~~~---~~g~-------~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 156 MAIKLIVDENREVIGAIFLDL---RNGE-------IFPIYAKATILATGGAGQ 198 (543)
T ss_pred EeeeeEEeCCcEEEEEEEEEC---CCCc-------EEEEEcCcEEECCCCCCC
Confidence 999998876555888865320 2232 147999999999999875
No 120
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.17 E-value=1.8e-10 Score=130.03 Aligned_cols=208 Identities=19% Similarity=0.203 Sum_probs=109.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC--CCCCcc-cccCccC---hH---------HHHHHhhhh
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--EVGAHI-ISGNVFE---PR---------ALNELLPQW 170 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~--~~g~~~-~~g~~i~---~~---------~l~~l~~~~ 170 (644)
+++||||||+|.|||+||+.+++. |++|+||||.+ .+|+.+ .+++.+. .. ..+.++.++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~------G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~ 76 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA------GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDW 76 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHH
Confidence 578999999999999999999999 99999999999 566655 2333221 11 111222222
Q ss_pred hhcCC---Ce--------eeec---cCCcEEEeccCCccccCCC--------------CCCCCcEEE---cHHHHHHHHH
Q 006466 171 KQEEA---PI--------RVPV---SSDKFWFLTKDRAFSLPSP--------------FSNRGNYVI---SLSQLVRWLG 219 (644)
Q Consensus 171 ~~~~~---~~--------~~~~---~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~v---~r~~l~~~L~ 219 (644)
..... .. ...+ ..+.+.|+.+ .++.+... ......... ....+.+.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~-~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~ 155 (549)
T PRK12834 77 LGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHS-LGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFE 155 (549)
T ss_pred HhccCCCCccccchHHHHHHHHHhCCHHHHHHHHH-cCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHH
Confidence 11100 00 0000 1122222221 11211000 000000000 1234667777
Q ss_pred HHHH---hc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcc--ccCCCccc-ccccceEEEcCEEEEecCCCCcchHHHH
Q 006466 220 GKAE---EL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI--AKDGSKKE-NFQRGVELRGRITLLAEGCRGSLSEKLI 292 (644)
Q Consensus 220 ~~a~---~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~--~~~G~~~~-~~~~g~~i~a~~vV~A~G~~s~l~~~l~ 292 (644)
+.++ +. ||+|++++++++++.+ +|+|+||...+... ..+|+... +-..-..|.||.||+|||.++...+.+.
T Consensus 156 ~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~~ 234 (549)
T PRK12834 156 RRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELVR 234 (549)
T ss_pred HHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHHH
Confidence 6654 23 5999999999999986 48899998632100 00000000 0000147899999999999999665554
Q ss_pred HHcCCCc--c----cccCc-ccceeEEEEEEeecCC
Q 006466 293 KNFKLRE--K----SHAQH-QTYALGIKEVWEIDEG 321 (644)
Q Consensus 293 ~~~~~~~--~----~~~~~-~~~~~g~~~~~~~~~~ 321 (644)
+.+.... . ....+ ...|.|+++...+...
T Consensus 235 ~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~ 270 (549)
T PRK12834 235 RNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGAR 270 (549)
T ss_pred HhCccccCCCccccccCCCCCCCcHHHHHHHHcCCc
Confidence 3322100 0 01222 2457677766555443
No 121
>PRK12839 hypothetical protein; Provisional
Probab=99.17 E-value=3.2e-10 Score=127.96 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=67.1
Q ss_pred EcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEE-EcCEEEEecCCCCcc
Q 006466 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVEL-RGRITLLAEGCRGSL 287 (644)
Q Consensus 209 v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i-~a~~vV~A~G~~s~l 287 (644)
+....|...|.+.+++.|++|+.++.+++++.+++|+|+||...+ .+|+ ..+ .++.||+|+|.++..
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~--------~~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGA--------VTVEATRGVVLATGGFPND 278 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCc--------EEEEeCCEEEEcCCCcccC
Confidence 345677888999999999999999999999887668899998654 2332 234 458999999999985
Q ss_pred hHHHHHHcCCCcc-----cccCcccceeEEEEEEeecC
Q 006466 288 SEKLIKNFKLREK-----SHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 288 ~~~l~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~ 320 (644)
...+.+.+..... ....+...|.|+++...+..
T Consensus 279 ~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA 316 (572)
T PRK12839 279 VDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGA 316 (572)
T ss_pred HHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCC
Confidence 4444333322100 01223456777766555443
No 122
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=3.9e-10 Score=127.95 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=105.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC--------hHHHHHHhhhhhhcCC--
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE--------PRALNELLPQWKQEEA-- 175 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~--------~~~l~~l~~~~~~~~~-- 175 (644)
..||||||+|.|||+||+.+++. |++|+||||.+..++++. +++.+. .......+.+......
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~ 76 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA------GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFL 76 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc------CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCc
Confidence 46999999999999999999999 999999999987665442 222221 0111111111111000
Q ss_pred --C--eeee--ccCCcEEEeccCCccccCCC------CCCCCcEE---------EcHHHHHHHHHHHHHhcC----CEEe
Q 006466 176 --P--IRVP--VSSDKFWFLTKDRAFSLPSP------FSNRGNYV---------ISLSQLVRWLGGKAEELG----VEIY 230 (644)
Q Consensus 176 --~--~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---------v~r~~l~~~L~~~a~~~G----v~i~ 230 (644)
+ +... ...+.+.|+.. .++.|... ....++.. .....+...|.+++++.+ |+++
T Consensus 77 ~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~ 155 (589)
T PRK08641 77 ANQPPVKAMCEAAPGIIHLLDR-MGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKY 155 (589)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEE
Confidence 0 0000 00001111110 11111000 00000000 123567788888776543 8899
Q ss_pred cCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCccccee
Q 006466 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL 310 (644)
Q Consensus 231 ~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~ 310 (644)
.++.+++++.+++|+|+||...+. .+|+ -..+.|+.||+|||+.+.+-. . ....+...|.
T Consensus 156 ~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~~y~-------~---tt~~~~~tGd 215 (589)
T PRK08641 156 EGWEFLGAVLDDEGVCRGIVAQDL---FTME-------IESFPADAVIMATGGPGIIFG-------K---STNSTINTGS 215 (589)
T ss_pred eeEEEEEEEECCCCEEEEEEEEEC---CCCc-------EEEEECCEEEECCCCCcCCCC-------C---CCCCCCCchH
Confidence 999999999876689999987541 1222 146899999999999986321 1 2334455666
Q ss_pred EEEEEEeecCC
Q 006466 311 GIKEVWEIDEG 321 (644)
Q Consensus 311 g~~~~~~~~~~ 321 (644)
|+.+.+.....
T Consensus 216 G~~mA~~aGA~ 226 (589)
T PRK08641 216 AASRVYQQGAY 226 (589)
T ss_pred HHHHHHHcCCC
Confidence 66655555443
No 123
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.16 E-value=1.2e-10 Score=126.38 Aligned_cols=144 Identities=25% Similarity=0.391 Sum_probs=90.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH---hhhhhhcCCCeeeec
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL---LPQWKQEEAPIRVPV 181 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l---~~~~~~~~~~~~~~~ 181 (644)
+++|||||||+||||..||++++++ |.+|+++|+...+|+.|++-+|+++++|... +..+...........
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~ 75 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISA 75 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceec
Confidence 3579999999999999999999999 9999999999889999999999999988544 333332110000000
Q ss_pred cCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
. ...++++..+..... + -..+...+....+++||+++.|... +.+++.| .|...
T Consensus 76 ~---------~~~id~~~~~~~k~~-v--~~~~~~~~~~l~~~~~V~vi~G~a~----f~~~~~v-~V~~~--------- 129 (454)
T COG1249 76 E---------VPKIDFEKLLARKDK-V--VRLLTGGVEGLLKKNGVDVIRGEAR----FVDPHTV-EVTGE--------- 129 (454)
T ss_pred C---------CCCcCHHHHHHHHHH-H--HHHHhhhHHHHHhhCCCEEEEEEEE----ECCCCEE-EEcCC---------
Confidence 0 001122111110001 0 1122333444456679999988754 3333433 33321
Q ss_pred cccccccceEEEcCEEEEecCCCCc
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
...+++|+.+|+|||+++.
T Consensus 130 ------~~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 130 ------DKETITADNIIIATGSRPR 148 (454)
T ss_pred ------CceEEEeCEEEEcCCCCCc
Confidence 1368999999999999875
No 124
>PLN02815 L-aspartate oxidase
Probab=99.15 E-value=2.6e-10 Score=128.77 Aligned_cols=191 Identities=17% Similarity=0.232 Sum_probs=108.1
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCcc----C-hHHHHHHhhhhhhcCC--
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVF----E-PRALNELLPQWKQEEA-- 175 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i----~-~~~l~~l~~~~~~~~~-- 175 (644)
+..++||||||+|.|||+||+.+++. | +|+||||.+..++++. +++.+ . ....+.++.++.....
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~------G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~ 98 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEY------G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFL 98 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhC------C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCC
Confidence 34578999999999999999999998 9 9999999987776442 32222 1 1112222222211100
Q ss_pred --C--eee--eccCCcEEEeccCCccccCCC------CCCCC-----c--EE--EcHHHHHHHHHHHHHhc-CCEEecCc
Q 006466 176 --P--IRV--PVSSDKFWFLTKDRAFSLPSP------FSNRG-----N--YV--ISLSQLVRWLGGKAEEL-GVEIYPGF 233 (644)
Q Consensus 176 --~--~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~--~~--v~r~~l~~~L~~~a~~~-Gv~i~~g~ 233 (644)
+ +.. ....+.+.|+.. .++.|... ....+ . +. .....+.+.|.+.+++. ||+|+.++
T Consensus 99 ~d~~lv~~~~~~s~e~i~~L~~-~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~ 177 (594)
T PLN02815 99 CDEETVRVVCTEGPERVKELIA-MGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHH 177 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEece
Confidence 0 000 000111111110 11111100 00000 0 00 12356788888888765 89999999
Q ss_pred eEEEEEEcCCC---cEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCccccee
Q 006466 234 AASEILYDADN---KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL 310 (644)
Q Consensus 234 ~v~~v~~~~~g---~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~ 310 (644)
.+++++.+++| +|+||...+ ..+|.. ..+.||.||+|+|+.+.+-. . ....+...|.
T Consensus 178 ~~~~Li~~~~g~~~~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~~~-------~---ttn~~~~tGD 237 (594)
T PLN02815 178 FAIDLLTSQDGGSIVCHGADVLD---TRTGEV-------VRFISKVTLLASGGAGHIYP-------S---TTNPLVATGD 237 (594)
T ss_pred EhheeeeecCCCccEEEEEEEEE---cCCCeE-------EEEEeceEEEcCCcceeeCC-------C---CCCCCCcccH
Confidence 99999986544 278887643 123331 56899999999999875321 1 1233456677
Q ss_pred EEEEEEeecCCC
Q 006466 311 GIKEVWEIDEGK 322 (644)
Q Consensus 311 g~~~~~~~~~~~ 322 (644)
|+.+.+......
T Consensus 238 Gi~mA~~aGA~l 249 (594)
T PLN02815 238 GIAMAHRAQAVV 249 (594)
T ss_pred HHHHHHHcCCcE
Confidence 777665554443
No 125
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=7.1e-10 Score=112.86 Aligned_cols=52 Identities=38% Similarity=0.639 Sum_probs=49.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRAL 163 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l 163 (644)
.+|||+|||+||+|..||+.++|+ |++.+++|++..+|+.|++.+|+++++|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl------GlkTacvEkr~~LGGTcLnvGcIPSKAL 89 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL------GLKTACVEKRGTLGGTCLNVGCIPSKAL 89 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh------cceeEEEeccCccCceeeeccccccHHH
Confidence 379999999999999999999999 9999999999999999999999998876
No 126
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.15 E-value=1.5e-10 Score=126.69 Aligned_cols=161 Identities=20% Similarity=0.272 Sum_probs=90.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC----hHHHHHHhhhhhhcC----CC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE----PRALNELLPQWKQEE----AP 176 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~----~~~l~~l~~~~~~~~----~~ 176 (644)
+++||||||+|.|||+||+.++ . |.+|+||||.+..++.+. +++.+. ......++.++.... .+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~------G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~ 75 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K------DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL 75 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c------CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 4689999999999999999974 5 999999999987766542 222221 111112222211100 00
Q ss_pred --eeee--ccCCcEEEeccCCccccC---------CCCCCCCcEE-----EcHHHHHHHHHHHHHh-cCCEEecCceEEE
Q 006466 177 --IRVP--VSSDKFWFLTKDRAFSLP---------SPFSNRGNYV-----ISLSQLVRWLGGKAEE-LGVEIYPGFAASE 237 (644)
Q Consensus 177 --~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~ 237 (644)
+... ...+.+.|+.+ .++.+. ..-......+ .....+.+.|.+++++ .||+|++++.+++
T Consensus 76 ~lv~~~~~~s~e~i~wL~~-~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~ 154 (433)
T PRK06175 76 EAVKILANESIENINKLID-MGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVD 154 (433)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeee
Confidence 0000 00011111110 011110 0000000011 1234678888888875 5899999999999
Q ss_pred EEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 238 ILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 238 v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
++.++ +.|.+|...+ +|. ...+.||.||+|+|..+.+
T Consensus 155 Li~~~-~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 155 IIEND-NTCIGAICLK-----DNK-------QINIYSKVTILATGGIGGL 191 (433)
T ss_pred eEecC-CEEEEEEEEE-----CCc-------EEEEEcCeEEEccCccccc
Confidence 98764 6787876432 111 1468999999999997753
No 127
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=9.2e-10 Score=124.98 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCC---CcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~---g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
...+.+.|.+.+++.||+|+.++.|++++.+++ |+|.||...+. ++|+ -..+.|+.||+|+|..+.+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGE-------IHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCe-------EEEEEeCeEEECCCCCccc
Confidence 357888999999999999999999999987653 78889876320 1222 1468999999999999854
No 128
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.14 E-value=1.3e-09 Score=125.20 Aligned_cols=42 Identities=33% Similarity=0.510 Sum_probs=37.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~ 154 (644)
..+|+|||||||||++|+.|++. |++|+|+|+.+.+|+....
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~ 234 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRY 234 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeee
Confidence 47999999999999999999999 9999999999988775543
No 129
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.14 E-value=2.2e-10 Score=139.17 Aligned_cols=203 Identities=19% Similarity=0.229 Sum_probs=114.1
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC---hHH---------HHHHhhh-
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE---PRA---------LNELLPQ- 169 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~---~~~---------l~~l~~~- 169 (644)
++.++||||||+|.||++||+.+++. |.+|+||||.+..|+.+. +++.+. .+. ...+..+
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~------Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~ 479 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC------GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDT 479 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHH
Confidence 35679999999999999999999998 999999999998887653 332221 100 0111111
Q ss_pred hhhc----CCC--eee--eccCCcEEEeccCCccccC-----------CCCCC---CCcEEE-cHHHHHHHHHHHHHh--
Q 006466 170 WKQE----EAP--IRV--PVSSDKFWFLTKDRAFSLP-----------SPFSN---RGNYVI-SLSQLVRWLGGKAEE-- 224 (644)
Q Consensus 170 ~~~~----~~~--~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~v-~r~~l~~~L~~~a~~-- 224 (644)
+... ..+ +.. ....+.+.|+.+ .++.+. ..... ..+... ....+.+.|.+.+++
T Consensus 480 ~~~~~~~~~d~~lv~~~~~~s~e~idwL~~-~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 480 HLSGKGGHCDPGLVKTLSVKSADAISWLSS-LGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred HHhccCCCCCHHHHHHHHHhhHHHHHHHHH-cCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 1000 000 000 001111122211 111110 00000 000000 124566777777765
Q ss_pred -cCCEEecCceEEEEEEcCC----C----cEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchH--HHHH
Q 006466 225 -LGVEIYPGFAASEILYDAD----N----KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE--KLIK 293 (644)
Q Consensus 225 -~Gv~i~~g~~v~~v~~~~~----g----~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~--~l~~ 293 (644)
.||+|++++++++++.+++ | +|+||...+.+ +.+|+. ..+.||.||+|+|.++...+ .|.+
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILATGGf~~N~e~~~m~~ 630 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILATGGFSNDHTPNSLLR 630 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEecCCcccCccHHHHHH
Confidence 4899999999999998752 2 78999876410 013432 57999999999999998652 4555
Q ss_pred HcCCCc---ccccCcccceeEEEEEEeecCC
Q 006466 294 NFKLRE---KSHAQHQTYALGIKEVWEIDEG 321 (644)
Q Consensus 294 ~~~~~~---~~~~~~~~~~~g~~~~~~~~~~ 321 (644)
+|.... .....+...|.|+++...+...
T Consensus 631 ~y~p~~~~~~~~~~~~~tGDGi~mA~~aGA~ 661 (1167)
T PTZ00306 631 EYAPQLSGFPTTNGPWATGDGVKLARKLGAT 661 (1167)
T ss_pred HhCccccCCCCCCCCCcccHHHHHHHHcCCc
Confidence 554321 0122345667777765555443
No 130
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.14 E-value=4.2e-10 Score=124.72 Aligned_cols=55 Identities=35% Similarity=0.533 Sum_probs=50.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (644)
..||||||||||||+++|..|++. |++|+|||+.+.+|+.|++-+|++.+.+.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~~~~GG~c~n~gciP~K~l~~~ 57 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL------GLETVCVERYSTLGGVCLNVGCIPSKALLHV 57 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCcccccccCCCcccHHHHHHH
Confidence 369999999999999999999999 9999999998889999999999999887544
No 131
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.13 E-value=4.7e-10 Score=127.31 Aligned_cols=88 Identities=23% Similarity=0.333 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l 291 (644)
..+...|.+.+++.||++++++.+++++.++ |+|.||...+. .+|+ ...+.|+.||+|+|..+.+..
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVlAtGG~~~~~~-- 195 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDL---KTGE-------IVFFRAKAVVLATGGYGRIYK-- 195 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEEC---CCCc-------EEEEECCeEEECCCcccCCCC--
Confidence 4678888988888899999999999998864 78888876430 1222 146899999999999986432
Q ss_pred HHHcCCCcccccCcccceeEEEEEEeecC
Q 006466 292 IKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (644)
. ....+...|.|+.+.+....
T Consensus 196 -----~---~~~~~~~tGdGi~ma~~aGa 216 (566)
T TIGR01812 196 -----T---TTNAHINTGDGMAMALRAGV 216 (566)
T ss_pred -----C---CCCCCCcccHHHHHHHHcCC
Confidence 1 12234455666655544443
No 132
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.13 E-value=2e-08 Score=109.56 Aligned_cols=172 Identities=23% Similarity=0.320 Sum_probs=105.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCccCh----------HHHHHHhhh---hh
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEP----------RALNELLPQ---WK 171 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~~----------~~l~~l~~~---~~ 171 (644)
+++||+|||||+.|+-.|..++.+ |++|+|+|+++.-.+++ .+...+.. +-..|.+.+ +.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R------Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~ 84 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR------GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLL 84 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC------CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHH
Confidence 679999999999999999999999 99999999998654433 22222211 101111110 10
Q ss_pred hc----CCC--eeeeccC--CcEE-----------------------EeccCCccccCCCCCC---C-----CcEEEcHH
Q 006466 172 QE----EAP--IRVPVSS--DKFW-----------------------FLTKDRAFSLPSPFSN---R-----GNYVISLS 212 (644)
Q Consensus 172 ~~----~~~--~~~~~~~--~~~~-----------------------~~~~~~~~~~~~~~~~---~-----~~~~v~r~ 212 (644)
.. -.| ...+... ...+ .+.......+.+.... . ..+.++-.
T Consensus 85 ~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdda 164 (532)
T COG0578 85 RIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDA 164 (532)
T ss_pred HhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechH
Confidence 00 001 1111111 0000 0000001111111111 1 13457778
Q ss_pred HHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHH
Q 006466 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLI 292 (644)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~ 292 (644)
+|.-.....|.+.|.+++..++|+++..++ + |+||.+.|. .+|+ ..+|+|+.||.|+|.|+ .++.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~---~tg~-------~~~ira~~VVNAaGpW~---d~i~ 229 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDR---ETGE-------TYEIRARAVVNAAGPWV---DEIL 229 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEec---CCCc-------EEEEEcCEEEECCCccH---HHHH
Confidence 888889999999999999999999999887 4 999999872 2343 26799999999999985 4555
Q ss_pred HHcCCC
Q 006466 293 KNFKLR 298 (644)
Q Consensus 293 ~~~~~~ 298 (644)
+..+..
T Consensus 230 ~~~~~~ 235 (532)
T COG0578 230 EMAGLE 235 (532)
T ss_pred Hhhccc
Confidence 545443
No 133
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.13 E-value=1.2e-10 Score=128.30 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=86.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
+|||+||||||||++||+.|+++ |++|+|+|+. .+|+.|...+|++.+.+.............. .+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~-------~~ 67 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH------GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAA-------GY 67 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhH-------hc
Confidence 59999999999999999999999 9999999995 7899999999999987744322211110000 00
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
.+......++++..+.... -....+.+.+.+.+++.||+++.+ ++..+. . ..+ .|. .+
T Consensus 68 g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~-~~v-~v~-~~------------- 125 (446)
T TIGR01424 68 GWTVGKARFDWKKLLQKKD---DEIARLSGLYKRLLANAGVELLEG-RARLVG--P-NTV-EVL-QD------------- 125 (446)
T ss_pred CcCCCCCCcCHHHHHHHHH---HHHHHHHHHHHHHHHhCCcEEEEE-EEEEec--C-CEE-EEe-cC-------------
Confidence 0000000111110000000 001234555666777889999887 454442 2 222 232 22
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++++|.||+|+|.++.
T Consensus 126 --g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 126 --GTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred --CeEEEcCEEEEecCCcCC
Confidence 467999999999998763
No 134
>PLN02546 glutathione reductase
Probab=99.12 E-value=3.1e-10 Score=127.29 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=88.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcC---------CCCCCCcccccCccChHHHHHHh---hhhhhc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNELL---PQWKQE 173 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk---------~~~~g~~~~~g~~i~~~~l~~l~---~~~~~~ 173 (644)
.+|||+||||||+|+.||+.|+++ |.+|+|+|+ ...+|+.|++-+|++.+.+.... ..+...
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~ 151 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF------GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES 151 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999999 999999996 24589999999999999875432 222110
Q ss_pred CCCeeeeccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006466 174 EAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (644)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d 253 (644)
. .+..... ....+++...+.... -...++.+++.+.+++.||+++.|. ++.+ +. .. |.+ +
T Consensus 152 ~-~~g~~~~--------~~~~~d~~~~~~~k~---~~~~~l~~~~~~~l~~~gV~~i~G~-a~~v--d~-~~---V~v-~ 211 (558)
T PLN02546 152 R-GFGWKYE--------TEPKHDWNTLIANKN---AELQRLTGIYKNILKNAGVTLIEGR-GKIV--DP-HT---VDV-D 211 (558)
T ss_pred h-hcCcccC--------CCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHhCCcEEEEeE-EEEc--cC-CE---EEE-C
Confidence 0 0000000 000111111000000 0123455667777788899999874 3332 22 22 333 2
Q ss_pred CccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 254 ~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||+|+|.+..
T Consensus 212 ---------------G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 212 ---------------GKLYTARNILIAVGGRPF 229 (558)
T ss_pred ---------------CEEEECCEEEEeCCCCCC
Confidence 467999999999998874
No 135
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.12 E-value=1.4e-09 Score=120.16 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=57.9
Q ss_pred EEEcHHHHHHHHHHHHHh----cC--CEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEe
Q 006466 207 YVISLSQLVRWLGGKAEE----LG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLA 280 (644)
Q Consensus 207 ~~v~r~~l~~~L~~~a~~----~G--v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A 280 (644)
..++...+.+.|.+.+++ .| ++|+++++|+++..++ +.++.|.+.+ | +++||.||.|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~---------------G-~i~A~~VVva 268 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR---------------G-EIRARFVVVS 268 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC---------------C-EEEeCEEEEC
Confidence 468889999999999998 77 8899999999998765 3455787765 4 6999999999
Q ss_pred cCCCCcchHHHHHHcCCC
Q 006466 281 EGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 281 ~G~~s~l~~~l~~~~~~~ 298 (644)
+|.++. .|.+.+|+.
T Consensus 269 AG~~S~---~La~~~Gi~ 283 (497)
T PTZ00383 269 ACGYSL---LFAQKMGYG 283 (497)
T ss_pred cChhHH---HHHHHhCCC
Confidence 999963 455566654
No 136
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.11 E-value=7.1e-10 Score=121.85 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=91.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhh----cCCCeeeec
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQ----EEAPIRVPV 181 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~----~~~~~~~~~ 181 (644)
...+|+|||||+|||+||..|++. |++|+|+||++.+||.+..........+ .+.+.... .-..+....
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~------G~~v~vfE~~~~vGG~W~~~~~~~~d~~-~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE------GHTVVVFEREKQVGGLWVYTPKSESDPL-SLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc------CCeEEEEecCCCCcceeecCCCcCCCcc-ccCCCCcccchhhhhhhhccC
Confidence 357999999999999999999999 9999999999999876532211110000 00000000 000000000
Q ss_pred cCCcEEEeccCCccccCCCCC-----CCCcEEEcHHHHHHHHHHHHHhcCCE--EecCceEEEEEEcCCCcEEEEEeCcC
Q 006466 182 SSDKFWFLTKDRAFSLPSPFS-----NRGNYVISLSQLVRWLGGKAEELGVE--IYPGFAASEILYDADNKVIGIGTNDM 254 (644)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~v~~~~~g~v~gV~~~d~ 254 (644)
..+.+.|. ++|.... ..........++.++|.+.++..|++ |+++++|++|..++ + .+.|++.+
T Consensus 82 p~~~m~f~------dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~-~w~V~~~~- 152 (461)
T PLN02172 82 PRECMGYR------DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-G-KWRVQSKN- 152 (461)
T ss_pred CHhhccCC------CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-C-eEEEEEEc-
Confidence 00000000 1221100 01112246788999999999999988 99999999998765 3 34566643
Q ss_pred ccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 255 GIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 255 g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.++. ..+..+|.||+|+|..+
T Consensus 153 ---~~~~-------~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 153 ---SGGF-------SKDEIFDAVVVCNGHYT 173 (461)
T ss_pred ---CCCc-------eEEEEcCEEEEeccCCC
Confidence 1111 13568999999999754
No 137
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=3e-10 Score=128.83 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=94.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccCccC-------h-HHHHHHhhhhhhcCC-
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-------P-RALNELLPQWKQEEA- 175 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~-------~-~~l~~l~~~~~~~~~- 175 (644)
.++||||||||.|||+||+.|++. ++|.+|+||||....++++. +++.+. + ......+.+......
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~ 77 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRL----DPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDY 77 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHh----cCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999986 22589999999876665442 222221 1 111111111000000
Q ss_pred ---C--ee--eeccCCcEEEeccCCccccCCC-------------CCCCCcEEE--cHHHHHHHHHHHHHhcCCEEecCc
Q 006466 176 ---P--IR--VPVSSDKFWFLTKDRAFSLPSP-------------FSNRGNYVI--SLSQLVRWLGGKAEELGVEIYPGF 233 (644)
Q Consensus 176 ---~--~~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~v--~r~~l~~~L~~~a~~~Gv~i~~g~ 233 (644)
+ .. .....+.+.++. ..++.|+.. ......+.. ....+.+.|.+.+++.||+|+.++
T Consensus 78 l~d~~~v~~l~~~a~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t 156 (575)
T PRK05945 78 LADQDAVAILTQEAPDVIIDLE-HLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEW 156 (575)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCc
Confidence 0 00 000001111111 011111100 000001111 235788889998998999999999
Q ss_pred eEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 234 ~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
.|+++..++ |.|.||...+ ..+|+ ...+.|+.||+|+|+++.+
T Consensus 157 ~v~~L~~~~-g~v~Gv~~~~---~~~g~-------~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 157 YVMRLILED-NQAKGVVMYH---IADGR-------LEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEEEEEEC-CEEEEEEEEE---cCCCe-------EEEEECCEEEECCCCCcCC
Confidence 999998764 7888886432 01222 2468999999999999863
No 138
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.10 E-value=7.2e-10 Score=123.04 Aligned_cols=53 Identities=42% Similarity=0.692 Sum_probs=48.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (644)
..|||+||||||||+++|+.|+++ |++|+|||+. .+|+.|+.-+|++.+.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~ 55 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL------GLKTALVEKG-KLGGTCLHKGCIPSKALLH 55 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEEcc-CCCcceEcCCcCchHHHHH
Confidence 369999999999999999999999 9999999996 7899999999999988644
No 139
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.10 E-value=1.3e-09 Score=119.32 Aligned_cols=163 Identities=23% Similarity=0.342 Sum_probs=101.2
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCe-EEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (644)
...+||+|||||++||++|++|.++ |.. ++|+||++.+|+.. .....+-
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~------g~~~~~i~Ek~~~~Gg~W------------------~~~ry~~------ 55 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA------GVPDFVIFEKRDDVGGTW------------------RYNRYPG------ 55 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc------CCCcEEEEEccCCcCCcc------------------hhccCCc------
Confidence 3468999999999999999999999 998 99999999988742 2111110
Q ss_pred CcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCC--EEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
+..-.......+|..-.....-.-....+...+.+.+++.++ +|.+++.|..+..++++..+.|++.+ |.
T Consensus 56 --l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~------~~ 127 (443)
T COG2072 56 --LRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD------GG 127 (443)
T ss_pred --eEECCchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC------CC
Confidence 000000111111110000000111222356666777777663 47778888888888877788899876 11
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006466 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~ 338 (644)
. +. +.+|.||+|+|..+. + . +..++....+.|.++|...|+-..
T Consensus 128 ~------~~-~~a~~vV~ATG~~~~-----------P----~-----------iP~~~G~~~f~g~~~HS~~~~~~~ 171 (443)
T COG2072 128 T------GE-LTADFVVVATGHLSE-----------P----Y-----------IPDFAGLDEFKGRILHSADWPNPE 171 (443)
T ss_pred e------ee-EecCEEEEeecCCCC-----------C----C-----------CCCCCCccCCCceEEchhcCCCcc
Confidence 0 12 779999999997542 1 0 123444455678899988886543
No 140
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.10 E-value=1.1e-09 Score=124.18 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcC-EEEEecCCCCcchHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~-~vV~A~G~~s~l~~~ 290 (644)
..+.+.|.+.+++.|++|++++.|++++.++ ++|++|.+.+ .++ ...+.++ .||+|+|.++.....
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~----~~~--------~~~i~a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVID----AGG--------ERRITARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEc----CCc--------eEEEEeCCEEEEcCCCccchHHH
Confidence 4577778888999999999999999998775 7888888754 111 1357885 899999999975555
Q ss_pred HHHHcCCCc-----ccccCcccceeEEEEEEeecC
Q 006466 291 LIKNFKLRE-----KSHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 291 l~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~ 320 (644)
+.+.+.... .....+...|.|+++...+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga 315 (574)
T PRK12842 281 IARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGG 315 (574)
T ss_pred HHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCC
Confidence 444332210 011223455667666555443
No 141
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.09 E-value=6.3e-10 Score=123.37 Aligned_cols=148 Identities=14% Similarity=0.292 Sum_probs=91.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccccc---CccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG---NVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g---~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
|||+|||||+||+.+|..+++. |.+|+|||+.....+.+.+. +.+....+.+-++.++ .......+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~------G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLG---G~~~~~~d~~ 71 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM------GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALG---GLMGKAADKA 71 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCEEEEecccccccCCCccccccccccchhhhhhhccc---chHHHHHHhh
Confidence 6999999999999999999999 99999999975433322111 1111111111111111 0000000001
Q ss_pred --cEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCC
Q 006466 185 --KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (644)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~ 261 (644)
.+..+....+ |. . ......+++..+.++|.+.+++. |++++.+ .|+++..++++.+.+|.+.+
T Consensus 72 ~i~~r~ln~skg---pA-V-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~-------- 137 (617)
T TIGR00136 72 GLQFRVLNSSKG---PA-V-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD-------- 137 (617)
T ss_pred ceeheecccCCC---Cc-c-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------
Confidence 1111111000 00 0 11124678889999999999887 6888755 68888766457788999876
Q ss_pred cccccccceEEEcCEEEEecCCCC
Q 006466 262 KKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
|..+.|+.||+|+|.+.
T Consensus 138 -------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 138 -------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred -------CCEEECCEEEEccCccc
Confidence 66899999999999995
No 142
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.09 E-value=9.7e-10 Score=124.73 Aligned_cols=97 Identities=24% Similarity=0.211 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEc-CEEEEecCCCCcch
Q 006466 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLS 288 (644)
Q Consensus 210 ~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a-~~vV~A~G~~s~l~ 288 (644)
....|.+.|.+.+++.|++|+++++|++++.++ ++|++|.+.+ ++. ..+++| |.||+|+|.++...
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~n~ 281 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVET-----PGG-------LQEIRARKGVVLAAGGFPHDP 281 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEE-----CCc-------EEEEEeCCEEEEcCCCcccCH
Confidence 345577889999999999999999999998764 7888887643 111 136889 99999999999855
Q ss_pred HHHHHHcCCCcc-----cccCcccceeEEEEEEeec
Q 006466 289 EKLIKNFKLREK-----SHAQHQTYALGIKEVWEID 319 (644)
Q Consensus 289 ~~l~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~ 319 (644)
..+.+.+..... ....+...|.|+++...+.
T Consensus 282 ~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~G 317 (581)
T PRK06134 282 ARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAG 317 (581)
T ss_pred HHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhC
Confidence 544333322110 1123445566666554443
No 143
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.09 E-value=4.7e-10 Score=124.07 Aligned_cols=156 Identities=23% Similarity=0.290 Sum_probs=90.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccC-----hHHHHHHhhhhhhcC----CC--
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE-----PRALNELLPQWKQEE----AP-- 176 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~-----~~~l~~l~~~~~~~~----~~-- 176 (644)
+||||||||+|||+||+.|++. |++|+||||.+..+....+.+.+. ....+..+.++.... .+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~------G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~ 75 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK------GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV 75 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence 6999999999999999999998 999999999865333222222221 111111111111000 00
Q ss_pred ee--eeccCCcEEEeccCCccccCCC----CCCC-CcEE---EcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcE
Q 006466 177 IR--VPVSSDKFWFLTKDRAFSLPSP----FSNR-GNYV---ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKV 246 (644)
Q Consensus 177 ~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~---v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v 246 (644)
+. .....+.+.|+.+ .++.+... .+.. ..+. .....+.+.|.+.+++.|++++.+ .++++..+ ++.+
T Consensus 76 v~~~~~~~~~~i~~L~~-~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v 152 (466)
T PRK08401 76 VWNVISKSSEAYDFLTS-LGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIK-NGKA 152 (466)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEE
Confidence 00 0000111112111 11111100 0000 0001 123578899999999999999876 78888765 4778
Q ss_pred EEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcch
Q 006466 247 IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 247 ~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~ 288 (644)
++|.+. +..+.+|.||+|+|.++.+.
T Consensus 153 ~Gv~~~----------------g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 153 YGVFLD----------------GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEEC----------------CEEEEeCeEEECCCcCcCCC
Confidence 788763 35799999999999999754
No 144
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.09 E-value=5.2e-10 Score=123.24 Aligned_cols=140 Identities=19% Similarity=0.309 Sum_probs=85.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
+|||+||||||||++||+.|++. |++|+|+||. .+|+.|+.-+|++.+.+............. ..+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~-------~~~ 67 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH------GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDA-------ADY 67 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC------CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHH-------hhc
Confidence 59999999999999999999999 9999999995 589999999999988764332211111000 000
Q ss_pred EEecc-CCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 187 WFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
.+-.. ...++++........ -...+.+.+...+++.||+++.++.+ ..+++. |.++
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gv~~~~g~~~----~~~~~~---v~v~------------- 124 (450)
T TIGR01421 68 GFYQNLENTFNWPELKEKRDA---YVDRLNGIYQKNLEKNKVDVIFGHAR----FTKDGT---VEVN------------- 124 (450)
T ss_pred CcccCCcCccCHHHHHHHHHH---HHHHHHHHHHHHHHhCCCEEEEEEEE----EccCCE---EEEC-------------
Confidence 00000 000111100000000 01223444566677789999999764 122232 3332
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
|..+.+|.||+|+|+++.
T Consensus 125 ---~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 125 ---GRDYTAPHILIATGGKPS 142 (450)
T ss_pred ---CEEEEeCEEEEecCCCCC
Confidence 457999999999998764
No 145
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=2.3e-09 Score=122.44 Aligned_cols=165 Identities=25% Similarity=0.282 Sum_probs=93.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCcc----C----hHHHHHHhhhhhhcC-
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----E----PRALNELLPQWKQEE- 174 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i----~----~~~l~~l~~~~~~~~- 174 (644)
.+++||||||+|.|||+||+.+++. |++|+||||.+..++++ .+++.+ . .......+.+.....
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~ 79 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARER------GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGK 79 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHC------CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhc
Confidence 4579999999999999999999998 99999999997655433 221111 1 111111111111000
Q ss_pred ---CC--ee--eeccCCcEEEeccCCccccCCCC------CCCCc----EE-----EcHHHHHHHHHHHHHhc-------
Q 006466 175 ---AP--IR--VPVSSDKFWFLTKDRAFSLPSPF------SNRGN----YV-----ISLSQLVRWLGGKAEEL------- 225 (644)
Q Consensus 175 ---~~--~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~-----v~r~~l~~~L~~~a~~~------- 225 (644)
.+ .. .....+.++|+. ..++.|.... ...++ .+ -....+.+.|.+.+++.
T Consensus 80 ~l~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~ 158 (626)
T PRK07803 80 FLNNWRMAELHAKEAPDRVWELE-TYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAE 158 (626)
T ss_pred cCCcHHHHHHHHHHhHHHHHHHH-HCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhcccccc
Confidence 00 00 000111111111 0111110000 00000 00 02356788888888776
Q ss_pred -C-----CEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 226 -G-----VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 226 -G-----v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
| |+|+.++.|++++.++ |+|.||...+. .+|+ -..+.|+.||+|+|+.+.+
T Consensus 159 ~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 159 LGDYEARIKVFAECTITELLKDG-GRIAGAFGYWR---ESGR-------FVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred ccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEEC---CCCe-------EEEEEcCeEEECCCcccCC
Confidence 7 9999999999998764 78888865331 2232 1468999999999987654
No 146
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.08 E-value=5.2e-08 Score=108.86 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchH
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~ 289 (644)
...+.+.|.+.+++.|++|+++++|++|..++ +.+.+|++.+ |.++.||.||.|.|.+..+.+
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~~ 290 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFGK 290 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCC---------------CCEEEcCEEEECCChHHHHHH
Confidence 36788899999999999999999999998775 6788998876 667999999999998765443
No 147
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=9.3e-10 Score=124.78 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEc-CEEEEecCCCCcchHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSEK 290 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a-~~vV~A~G~~s~l~~~ 290 (644)
..|...|.+.+++.|++|++++.+++++.+ +++|++|.+.+ +|+ ...+.| +.||+|+|..+... +
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~A~~~VVlAtGg~~~n~-e 286 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ-----GGV-------RRRIRARGGVVLATGGFNRHP-Q 286 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec-----CCe-------EEEEEccceEEECCCCcccCH-H
Confidence 457788999999999999999999999876 47898988753 222 146786 78999999999855 4
Q ss_pred HHHHcCCCcc---cccCcccceeEEEEEEeecC
Q 006466 291 LIKNFKLREK---SHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 291 l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 320 (644)
|.+++..... ....+...|.|+++...+..
T Consensus 287 m~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga 319 (578)
T PRK12843 287 LRRELLPAAVARYSPGAPGHTGAAIDLALDAGA 319 (578)
T ss_pred HHHHhCCCCcccccCCCCCCCcHHHHHHHHhCC
Confidence 5555532210 12234566777776555443
No 148
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.08 E-value=1.1e-09 Score=124.69 Aligned_cols=167 Identities=14% Similarity=0.205 Sum_probs=93.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccC--ccCh-----HHHHHHhhhhhhcCC-
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGN--VFEP-----RALNELLPQWKQEEA- 175 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~--~i~~-----~~l~~l~~~~~~~~~- 175 (644)
...++||||||||.|||+||+.+++. .+|.+|+||||....++...+++ .+.. ....+.+.+......
T Consensus 8 ~~~~~DVlVIG~G~AGl~AAi~Aae~----~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~ 83 (608)
T PRK06854 8 VEVDTDILIIGGGMAGCGAAFEAKEW----APDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMG 83 (608)
T ss_pred ceeEeCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccC
Confidence 34578999999999999999999884 23799999999876544433222 1211 011111111111000
Q ss_pred ---C--eeee--ccCCcEEEeccCCccccCCC----C--CCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEc
Q 006466 176 ---P--IRVP--VSSDKFWFLTKDRAFSLPSP----F--SNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYD 241 (644)
Q Consensus 176 ---~--~~~~--~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~ 241 (644)
+ +... ...+.+.|+.. .++.+... . .......+....+.+.|.+.+++.| |+|++++.|+++..+
T Consensus 84 ~~d~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~ 162 (608)
T PRK06854 84 IVREDLVYDIARHVDSVVHLFEE-WGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVD 162 (608)
T ss_pred CCCHHHHHHHHHhHHHHHHHHHH-cCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe
Confidence 0 0000 00011111110 11111000 0 0000011344577888888888876 999999999999876
Q ss_pred CCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 242 ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 242 ~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
+ ++|+||...+. .+|+ ...+.||.||+|+|..+.
T Consensus 163 ~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 163 D-NRIAGAVGFSV---RENK-------FYVFKAKAVIVATGGAAG 196 (608)
T ss_pred C-CEEEEEEEEEc---cCCc-------EEEEECCEEEECCCchhh
Confidence 5 67888864220 1222 147899999999998874
No 149
>PTZ00058 glutathione reductase; Provisional
Probab=99.07 E-value=2.1e-10 Score=128.58 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=48.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (644)
++||||||||||||++||+.|++. |.+|+||||. .+|+.|++-+|++.+.|.+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~------G~~ValIEk~-~~GGtCln~GCiPsK~l~~ 99 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN------KAKVALVEKD-YLGGTCVNVGCVPKKIMFN 99 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc------CCeEEEEecc-cccccccccCCCCCchhhh
Confidence 579999999999999999999999 9999999996 6899999999999888744
No 150
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.07 E-value=2.6e-09 Score=118.23 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=58.7
Q ss_pred cEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
...++...+.+.|.+.+++.|++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++||+||+|+|.++
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCcch
Confidence 55689999999999999999999999999999987654433 3443220 1111 24699999999999986
Q ss_pred cchHHHHHHcCCC
Q 006466 286 SLSEKLIKNFKLR 298 (644)
Q Consensus 286 ~l~~~l~~~~~~~ 298 (644)
..+.+.+|+.
T Consensus 241 ---~~La~~~Gi~ 250 (483)
T TIGR01320 241 ---LPLLQKSGIP 250 (483)
T ss_pred ---HHHHHHcCCC
Confidence 4566666665
No 151
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.07 E-value=7.7e-10 Score=124.83 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcC-EEEEecCCCCcchHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~-~vV~A~G~~s~l~~~ 290 (644)
..|...|.+.+++.|++|++++.|++++.++ ++|+||.... +|+ ...+.|+ .||+|+|..+.. ++
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~N-~e 273 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGHN-AE 273 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccCC-HH
Confidence 4567788899999999999999999999874 7899988742 232 2568895 799999999984 44
Q ss_pred HHHHcCCCcc----cccCcccceeEEEEEEeecCC
Q 006466 291 LIKNFKLREK----SHAQHQTYALGIKEVWEIDEG 321 (644)
Q Consensus 291 l~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~ 321 (644)
|.+.|..... ....+...|.|+++...+...
T Consensus 274 m~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~ 308 (557)
T PRK12844 274 MRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAA 308 (557)
T ss_pred HHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCC
Confidence 5555543210 112344567777766555443
No 152
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.07 E-value=1.3e-09 Score=123.90 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHh----cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 212 SQLVRWLGGKAEE----LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 212 ~~l~~~L~~~a~~----~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
..+...|.+.+++ .||++++++.+++++.+++|+|+||.+.+. .+|+. ..+.||.||+|||..+.+
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence 4555566655543 379999999999999876678999987541 12321 468999999999998864
Q ss_pred hHHHHHHcCCCcccccCcccceeEEEEEEeecC
Q 006466 288 SEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (644)
.. . ....+...|.|+.+.+.+..
T Consensus 199 ~~-------~---~t~~~~~tGdGi~mA~~aGa 221 (603)
T TIGR01811 199 FG-------K---STNAMNSNASAAWRAYEQGA 221 (603)
T ss_pred CC-------c---cCCCCCcCcHHHHHHHHcCC
Confidence 21 1 12334455666655554444
No 153
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.07 E-value=1.4e-09 Score=122.21 Aligned_cols=188 Identities=16% Similarity=0.238 Sum_probs=103.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCcc----Ch-HHHHHHhhhhhhcC----
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----EP-RALNELLPQWKQEE---- 174 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i----~~-~~l~~l~~~~~~~~---- 174 (644)
..++||||||+|.|||+||+.+++ +.+|+||||....++++ .+++.+ ++ ......+.+.....
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-------~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~ 78 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-------HRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC 78 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-------CCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence 346899999999999999999986 47999999998766643 333322 11 11111111111100
Q ss_pred CC--eee--eccCCcEEEeccCCccccCC-------------CCC-CCCcEEE-----cHHHHHHHHHHHHHhc-CCEEe
Q 006466 175 AP--IRV--PVSSDKFWFLTKDRAFSLPS-------------PFS-NRGNYVI-----SLSQLVRWLGGKAEEL-GVEIY 230 (644)
Q Consensus 175 ~~--~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~v-----~r~~l~~~L~~~a~~~-Gv~i~ 230 (644)
.+ +.. ....+.+.|+.. .++.|.. ... .....++ ....+...|.+++.+. ||+|+
T Consensus 79 d~~~v~~~~~~~~~~i~~L~~-~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~ 157 (536)
T PRK09077 79 DEDAVRFIAENAREAVQWLID-QGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVL 157 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 00 000 000001111110 0111100 000 0000111 2356788888888765 79999
Q ss_pred cCceEEEEEEcC-----CCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCc
Q 006466 231 PGFAASEILYDA-----DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQH 305 (644)
Q Consensus 231 ~g~~v~~v~~~~-----~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~ 305 (644)
.++.+++++.++ +++|+||...+. .+|+ -..+.|+.||+|+|..+.+.. .. ...+
T Consensus 158 ~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVlATGG~~~~~~-------~~---~~~~ 217 (536)
T PRK09077 158 ERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKER-------VETIRAKFVVLATGGASKVYL-------YT---TNPD 217 (536)
T ss_pred eeEEeeeeeecccccCCCCEEEEEEEEEC---CCCc-------EEEEecCeEEECCCCCCCCCC-------CC---cCCC
Confidence 999999998754 378889886531 2232 146899999999999986432 11 2233
Q ss_pred ccceeEEEEEEeecC
Q 006466 306 QTYALGIKEVWEIDE 320 (644)
Q Consensus 306 ~~~~~g~~~~~~~~~ 320 (644)
...|.|+.+.+....
T Consensus 218 ~~tGdG~~mA~~aGA 232 (536)
T PRK09077 218 IASGDGIAMAWRAGC 232 (536)
T ss_pred CCCcHHHHHHHHcCC
Confidence 455666655544443
No 154
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.06 E-value=1.3e-09 Score=113.19 Aligned_cols=113 Identities=27% Similarity=0.401 Sum_probs=80.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
|||+|||||+||+++|..|++. |.+|+|||+.+ +|+..... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~-~gg~~~~~-----~~~------------------------ 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA------NLKTLIIEGME-PGGQLTTT-----TEV------------------------ 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEeccC-CCcceeec-----ccc------------------------
Confidence 6999999999999999999999 99999999886 44421100 000
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
..+|.. ...+....+...+.+.+++.|+++++ .+|+++..+++ .+.|.+.+
T Consensus 45 -------~~~~~~-----~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~--~~~v~~~~-------------- 95 (300)
T TIGR01292 45 -------ENYPGF-----PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDR--PFKVKTGD-------------- 95 (300)
T ss_pred -------cccCCC-----CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCC--eeEEEeCC--------------
Confidence 001100 00133456778888889999999998 78999877653 23466544
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
+.++++|.||+|+|.++.
T Consensus 96 -~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 96 -GKEYTAKAVIIATGASAR 113 (300)
T ss_pred -CCEEEeCEEEECCCCCcc
Confidence 567999999999998753
No 155
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.06 E-value=1e-08 Score=102.63 Aligned_cols=172 Identities=19% Similarity=0.248 Sum_probs=98.0
Q ss_pred cCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCe
Q 006466 274 GRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQ 353 (644)
Q Consensus 274 a~~vV~A~G~~s~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~~l~~~~~~~ 353 (644)
|.++|+|||..|.+|+++. + .......+.+|+.- ... ....++...-..+ +. +-..+|+++.+.
T Consensus 2 A~LtivaDG~~S~fRk~l~-----~--~~~~v~S~fvGl~l-~~~--~lp~~~~ghvil~----~~--~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-----D--NKPQVRSYFVGLIL-KDA--PLPKPNHGHVILG----KP--GPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhc-----C--CCCceeeeEEEEEE-cCC--CCCCCCceEEEEc----CC--CcEEEEEcCCCc
Confidence 7899999999999999873 1 12233445555542 111 1122222211222 11 336789998887
Q ss_pred EEEEEEEccCCCCCCCCcHHHHHHhhc--CCcc--------hhcccCCceeeecceeeecCCcccCCcccCCCeEEEccC
Q 006466 354 IALGLVVALNYHNPFLNPYEEFQKFKH--HPAI--------KPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCA 423 (644)
Q Consensus 354 ~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i--------~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiGDA 423 (644)
+++-+-+..+ .-|..+..+..+.+++ .|.+ .+.++.++ .|..|..-+.+ .....+|++++|||
T Consensus 66 tR~Lvdvp~~-k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~r-----irsMPn~~lp~-~~~~~~G~vllGDA 138 (276)
T PF08491_consen 66 TRVLVDVPGP-KLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGR-----IRSMPNSFLPA-SPNWKPGVVLLGDA 138 (276)
T ss_pred eEEEEEeCCC-ccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCC-----cceecccccCC-CCCCCCCEEEEehh
Confidence 7776555433 1232222122222211 1222 22233332 12333332221 23344799999999
Q ss_pred CcccCCCCCcchHHHHHHHHHHHHHHhcc--ccC----CchHHHHHHHHHH
Q 006466 424 AGFLNVPKIKGTHTAMKSGMLAAEAGFGV--LHE----DSNMEIYWDTLQK 468 (644)
Q Consensus 424 A~~~~P~~g~G~~~A~~sa~~lA~~l~~~--l~~----~~~l~~Ye~~~~~ 468 (644)
+++-+|++|+||+.|+.|+.++++.|... +.+ .++++.|...|+.
T Consensus 139 ~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~ 189 (276)
T PF08491_consen 139 ANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKP 189 (276)
T ss_pred hcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999876 333 2455566655543
No 156
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.06 E-value=4.8e-10 Score=124.20 Aligned_cols=146 Identities=23% Similarity=0.342 Sum_probs=86.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhc-CCCeeeeccCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE-EAPIRVPVSSD 184 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~-~~~~~~~~~~~ 184 (644)
..|||+||||||||+++|+.|++. |++|+||||.+.+|+.+...++++.+.+.......... ..+.....
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~------G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~--- 74 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL------GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSY--- 74 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhccc---
Confidence 369999999999999999999999 99999999988899998888899887764432221110 00000000
Q ss_pred cEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccc
Q 006466 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (644)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (644)
.....++++..+... .. ....+.+.+.+.+++.||+++.+.. ..+ +. +.+ .|...+ |+
T Consensus 75 -----~~~~~~~~~~l~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~g~~-~~~--~~-~~~-~v~~~~------g~--- 132 (461)
T PRK05249 75 -----RVKLRITFADLLARA-DH--VINKQVEVRRGQYERNRVDLIQGRA-RFV--DP-HTV-EVECPD------GE--- 132 (461)
T ss_pred -----CCcCccCHHHHHHHH-HH--HHHHHHHHHHHHHHHCCCEEEEEEE-EEe--cC-CEE-EEEeCC------Cc---
Confidence 000000000000000 00 0012334456667778999998853 222 22 323 455433 11
Q ss_pred ccccceEEEcCEEEEecCCCCc
Q 006466 265 NFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..++++|.||+|+|+++.
T Consensus 133 ----~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 133 ----VETLTADKIVIATGSRPY 150 (461)
T ss_pred ----eEEEEcCEEEEcCCCCCC
Confidence 136999999999998764
No 157
>PRK06370 mercuric reductase; Validated
Probab=99.06 E-value=1.2e-09 Score=120.88 Aligned_cols=55 Identities=27% Similarity=0.517 Sum_probs=49.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (644)
+.+||||||||||||++||+.|+++ |++|+||||. .+|+.|+..+|++++.+...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 57 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL------GMKVALIERG-LLGGTCVNTGCVPTKTLIAS 57 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-ccCCceeccccCcHHHHHHH
Confidence 3469999999999999999999999 9999999996 57999999999999887543
No 158
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-09 Score=112.54 Aligned_cols=114 Identities=28% Similarity=0.429 Sum_probs=79.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCe-EEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
+.|||+|||||||||+||+.++|. +++ ++|+|+. .+|+... .+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~------~l~~~li~~~~-~~gg~~~---------------~~~------------- 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA------GLKVVLILEGG-EPGGQLT---------------KTT------------- 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc------CCCcEEEEecC-CcCCccc---------------cce-------------
Confidence 469999999999999999999999 999 6666654 4443110 000
Q ss_pred cEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccc
Q 006466 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (644)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (644)
.. -++|.. .-.+.-..|.+.+.++++..|+++.. ..|.++...++ ...|++.+
T Consensus 47 ---~v-----enypg~-----~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~----------- 99 (305)
T COG0492 47 ---DV-----ENYPGF-----PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDK----------- 99 (305)
T ss_pred ---ee-----cCCCCC-----ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECC-----------
Confidence 00 011100 01145678889999999999999887 56777766543 55688776
Q ss_pred ccccceEEEcCEEEEecCCCCc
Q 006466 265 NFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
|. +++|.||+|+|....
T Consensus 100 ----~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 100 ----GT-YEAKAVIIATGAGAR 116 (305)
T ss_pred ----Ce-EEEeEEEECcCCccc
Confidence 45 999999999998763
No 159
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.05 E-value=1.5e-09 Score=120.25 Aligned_cols=54 Identities=41% Similarity=0.641 Sum_probs=49.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (644)
+|||+||||||||++||+.|++. |++|+|||+...+|+.|+.-+|++.+.+...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~------G~~V~liE~~~~~GG~c~~~gciPsK~l~~~ 56 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL------GLKVACVEGRSTLGGTCLNVGCMPSKALLHA 56 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCceeeeeccCcccccHHHHHH
Confidence 59999999999999999999999 9999999987789999999999999887543
No 160
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=5.1e-09 Score=118.28 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcC-EEEEecCCCCcchHHH
Q 006466 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 291 (644)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~-~vV~A~G~~s~l~~~l 291 (644)
.+...|.+.+++.|++|++++.+++++.++ ++|++|.... +|+ ...+.|+ .||+|+|..... +.|
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~n-~~m 274 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEHN-EQM 274 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCcC-HHH
Confidence 456677788888999999999999998864 7888887642 222 2568896 699999999884 445
Q ss_pred HHHcCCC----cccccCcccceeEEEEEEeecCC
Q 006466 292 IKNFKLR----EKSHAQHQTYALGIKEVWEIDEG 321 (644)
Q Consensus 292 ~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~ 321 (644)
.+.+... ......+...|.|+++...+...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~ 308 (557)
T PRK07843 275 RAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAA 308 (557)
T ss_pred HHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCC
Confidence 5555321 00122344567777766555443
No 161
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.05 E-value=1.6e-09 Score=120.09 Aligned_cols=52 Identities=42% Similarity=0.714 Sum_probs=47.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (644)
.||||||||||||++||+.|+++ |.+|+|+||.. +|+.+..-++++.+.+.+
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~~~gciP~k~l~~ 55 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL------GLKVAIVEKEK-LGGTCLNRGCIPSKALLH 55 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC------CCcEEEEeccc-cccceeecccCCcHHHHH
Confidence 69999999999999999999999 99999999987 899998888998887644
No 162
>PRK06116 glutathione reductase; Validated
Probab=99.05 E-value=2.8e-10 Score=125.56 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=47.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (644)
+|||+||||||||++||+.|+++ |++|+|||+. .+|+.+++-+|++.+.+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~------G~~V~liE~~-~~GG~c~n~gciP~k~l~~ 55 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY------GAKVALIEAK-RLGGTCVNVGCVPKKLMWY 55 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc-chhhhhhccCcchHHHHHH
Confidence 69999999999999999999999 9999999996 7899999999999887643
No 163
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=6.8e-09 Score=115.06 Aligned_cols=79 Identities=19% Similarity=0.321 Sum_probs=57.9
Q ss_pred cEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
.+.++...+.+.|.+.+++.| ++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++|++||+|+|.+
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~---~~G~-------~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDL---KTGE-------KRTVRAKFVFIGAGGG 245 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEc---CCCc-------eEEEEcCEEEECCCcc
Confidence 567889999999999999987 89999999999988665643 3443210 0111 1369999999999998
Q ss_pred CcchHHHHHHcCCC
Q 006466 285 GSLSEKLIKNFKLR 298 (644)
Q Consensus 285 s~l~~~l~~~~~~~ 298 (644)
+ ..+.+..|+.
T Consensus 246 s---~~L~~~~Gi~ 256 (494)
T PRK05257 246 A---LPLLQKSGIP 256 (494)
T ss_pred h---HHHHHHcCCC
Confidence 6 3455556655
No 164
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.04 E-value=6.5e-10 Score=110.58 Aligned_cols=198 Identities=25% Similarity=0.323 Sum_probs=118.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc---c---cCccCh----------H-----------
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII---S---GNVFEP----------R----------- 161 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~---~---g~~i~~----------~----------- 161 (644)
.|||||+|.|||+|+..+-.. |-.|+++||...+|+... + |++.+. +
T Consensus 11 pvvVIGgGLAGLsasn~iin~------gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak 84 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK------GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK 84 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc------CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence 599999999999999999988 777999999999988653 2 222211 0
Q ss_pred --HHHHHhhhhhhcCCCeeeeccCCcEEEeccCCccc-----------cCCCCCCCCcEEEcHHHHHHHHH----HHHHh
Q 006466 162 --ALNELLPQWKQEEAPIRVPVSSDKFWFLTKDRAFS-----------LPSPFSNRGNYVISLSQLVRWLG----GKAEE 224 (644)
Q Consensus 162 --~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~r~~l~~~L~----~~a~~ 224 (644)
...+|+..+. .-+...+.|+.....++ .|...+.. .-.-.--.+...|. +.+.+
T Consensus 85 sk~~~eLm~~La--------~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s-~plppgfei~~~L~~~l~k~as~ 155 (477)
T KOG2404|consen 85 SKGVPELMEKLA--------ANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSS-GPLPPGFEIVKALSTRLKKKASE 155 (477)
T ss_pred cCCcHHHHHHHH--------hcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccC-CCCCCchHHHHHHHHHHHHhhhc
Confidence 0111111111 11122233443322222 12111110 00111123344444 44444
Q ss_pred cC--CEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCc---
Q 006466 225 LG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE--- 299 (644)
Q Consensus 225 ~G--v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~--- 299 (644)
.. ++|..+++|++|.. ++|.|.+|..-| .+|+. ..+.++.||+|+|.++.-.+.|.+.|+...
T Consensus 156 ~pe~~ki~~nskvv~il~-n~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey~pel~~l 223 (477)
T KOG2404|consen 156 NPELVKILLNSKVVDILR-NNGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEYGPELFGL 223 (477)
T ss_pred ChHHHhhhhcceeeeeec-CCCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHhChhhccC
Confidence 32 88999999999984 458999999876 55653 568899999999999976688887776442
Q ss_pred ccccCcccceeEEEEEEeecCCCCCCCcE-EEEec
Q 006466 300 KSHAQHQTYALGIKEVWEIDEGKHNPGEI-LHTLG 333 (644)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~-~h~~g 333 (644)
+.+.-++..|.|-+++..+.......+.+ +|..|
T Consensus 224 pTTNG~~~tGDgqk~l~klga~liDmd~vqvhptg 258 (477)
T KOG2404|consen 224 PTTNGAQTTGDGQKMLMKLGASLIDMDQVQVHPTG 258 (477)
T ss_pred CcCCCCcccCcHHHHHHHhCccccccceeEecccC
Confidence 14455667777777666666555444443 44443
No 165
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.03 E-value=7.1e-08 Score=108.10 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
..+.+.|.+.+++.|++|++++.|++|..++ +.+++|++.+ |.++.||.||.|.+.+...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLAD---------------GERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence 6788899999999999999999999998775 5677888876 6679999999998875543
No 166
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.02 E-value=2e-09 Score=119.53 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=84.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcC------CCCCCCcccccCccChHHHHHH---hhhhhhcCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK------GAEVGAHIISGNVFEPRALNEL---LPQWKQEEAP 176 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk------~~~~g~~~~~g~~i~~~~l~~l---~~~~~~~~~~ 176 (644)
.+|||+||||||||++||+.|++. |.+|+|||+ ...+|+.|.+-++++.+.+... +..+......
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~------g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~ 76 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL------GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFAD 76 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC------CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHh
Confidence 369999999999999999999999 999999998 3567888888888877665332 2222211000
Q ss_pred eeeeccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 177 IRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
...... ...++++..+..... -...+.+.+.+..+..||+++.+. +..+..++++.. |.+.+
T Consensus 77 ~G~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~--v~v~~--- 138 (475)
T PRK06327 77 HGIHVD---------GVKIDVAKMIARKDK---VVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAGYE--IKVTG--- 138 (475)
T ss_pred cCccCC---------CCccCHHHHHHHHHH---HHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCCCE--EEEec---
Confidence 000000 000111100000000 001222344455566799999875 334433333333 33321
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
. ++.++++|.||+|+|.+..
T Consensus 139 -~---------~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 139 -E---------DETVITAKHVIIATGSEPR 158 (475)
T ss_pred -C---------CCeEEEeCEEEEeCCCCCC
Confidence 0 1357999999999998863
No 167
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.01 E-value=2e-09 Score=121.66 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=90.6
Q ss_pred cEEEECCCHHHHHHHHHHH----hhchhcCCCCeEEEEcCCCCCCCcccccC--ccCh--------HHHHHHhhhhhhcC
Q 006466 109 DVVIVGAGPAGLSAAIRLK----QLCREKNVDLSVCVVEKGAEVGAHIISGN--VFEP--------RALNELLPQWKQEE 174 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La----~~~~~~~~G~~V~viEk~~~~g~~~~~g~--~i~~--------~~l~~l~~~~~~~~ 174 (644)
||||||||.|||+||+.++ +. |++|+||||....+..+.+++ .+.. ...+..+.+.....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~------G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~ 74 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK------GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDL 74 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC------CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhc
Confidence 8999999999999999998 56 999999999875444333323 1211 01111111111110
Q ss_pred C----C--ee--eeccCCcEEEeccCCccccCCC-----CCCCCcEE--EcHHHHHHHHHHHHHhcCCEEecCceEEEEE
Q 006466 175 A----P--IR--VPVSSDKFWFLTKDRAFSLPSP-----FSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFAASEIL 239 (644)
Q Consensus 175 ~----~--~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~ 239 (644)
. + +. .....+.+.++.. .++.|... ....+.+. .....+.+.|...+.+.+++++.++.+++++
T Consensus 75 ~gl~d~~lV~~lv~~s~~~i~~L~~-~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll 153 (614)
T TIGR02061 75 MGLVREDLIFDMARHVDDSVHLFEE-WGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLL 153 (614)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH-cCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEE
Confidence 0 0 00 0001111222211 12222100 00000000 1133556667767777778999999999999
Q ss_pred EcCC--CcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 240 YDAD--NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 240 ~~~~--g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
.+++ |+|+||...+ ..+|+ -..+.|+.||+|+|.++.
T Consensus 154 ~d~~~~GrV~Gv~~~~---~~~g~-------~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 154 LDKNTPNRIAGAVGFN---VRANE-------VHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred ecCCCCCeEEEEEEEE---eCCCc-------EEEEECCEEEECCCcccc
Confidence 8653 6899987643 12333 156899999999999874
No 168
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.00 E-value=3.7e-09 Score=116.33 Aligned_cols=51 Identities=27% Similarity=0.484 Sum_probs=45.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC-CCCcccccCccChHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHIISGNVFEPRAL 163 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~~~~g~~i~~~~l 163 (644)
+||||||||||||++||+.|+++ |.+|+||||.+. +|+.|++.++++.+.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~------g~~V~liE~~~~~~GG~c~~~gciP~k~~ 54 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA------GKKVALVEESKAMYGGTCINIGCIPTKTL 54 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCEEEEEecCCcccceeeecCccccchHh
Confidence 69999999999999999999999 999999999874 6888888888887765
No 169
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.00 E-value=3.7e-09 Score=113.37 Aligned_cols=150 Identities=21% Similarity=0.295 Sum_probs=89.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCC-CCcccccCccCh-----HHH-------HHHhhhhhhc-
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV-GAHIISGNVFEP-----RAL-------NELLPQWKQE- 173 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~-g~~~~~g~~i~~-----~~l-------~~l~~~~~~~- 173 (644)
+||+|||||++|+++|+.|++. |.+|+|||+.... |+...+++.+.+ ..+ .++++++...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~------G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 74 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR------GLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKA 74 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 5999999999999999999999 9999999998642 333333333211 101 1222222211
Q ss_pred CCCee------eeccCC-----------------cEEEeccCCcc-ccCCC--------CCCCCcEEEcHHHHHHHHHHH
Q 006466 174 EAPIR------VPVSSD-----------------KFWFLTKDRAF-SLPSP--------FSNRGNYVISLSQLVRWLGGK 221 (644)
Q Consensus 174 ~~~~~------~~~~~~-----------------~~~~~~~~~~~-~~~~~--------~~~~~~~~v~r~~l~~~L~~~ 221 (644)
...+. ...+.+ .+.+++...-. .+|.. ........++...+...|.+.
T Consensus 75 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~ 154 (365)
T TIGR03364 75 GIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY 154 (365)
T ss_pred CCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence 11110 000000 11222211000 01200 111224557888999999998
Q ss_pred HHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 222 AEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 222 a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
+.+. |++|+.+++|+++.. + .|.+.+ | +++||.||+|+|.++
T Consensus 155 ~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 155 LAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGADF 197 (365)
T ss_pred HHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCCh
Confidence 8775 999999999999853 2 366654 3 478999999999986
No 170
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.99 E-value=2.7e-09 Score=119.67 Aligned_cols=114 Identities=26% Similarity=0.353 Sum_probs=83.8
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
...|||+||||||||++||+.|++. |++|+|+++. +|+...... .+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~------G~~v~li~~~--~GG~~~~~~-----~~--------------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK------GIRTGIVAER--FGGQVLDTM-----GI--------------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecC--CCCeeeccC-----cc---------------------
Confidence 3469999999999999999999999 9999999864 565321000 00
Q ss_pred cEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccc
Q 006466 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (644)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (644)
. .++.. ......++.+.|.+.+++.|++++.+++|+++..+++ .+.|.+.+
T Consensus 255 --~--------~~~~~------~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~--~~~V~~~~----------- 305 (517)
T PRK15317 255 --E--------NFISV------PETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELAN----------- 305 (517)
T ss_pred --c--------ccCCC------CCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC--eEEEEECC-----------
Confidence 0 00000 0124567889999999999999999999999987653 23466554
Q ss_pred ccccceEEEcCEEEEecCCCC
Q 006466 265 NFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s 285 (644)
|.++.+|.||+|+|.++
T Consensus 306 ----g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 306 ----GAVLKAKTVILATGARW 322 (517)
T ss_pred ----CCEEEcCEEEECCCCCc
Confidence 56799999999999876
No 171
>PRK14727 putative mercuric reductase; Provisional
Probab=98.99 E-value=5.1e-09 Score=116.35 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=53.1
Q ss_pred cccccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHH
Q 006466 101 MCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 101 ~~~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (644)
|.+....|||+||||||+|+++|+.|+++ |.+|+|+|+.+.+|+.|++.+|++.+.+..
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~------g~~v~~ie~~~~~GG~c~n~GciPsk~l~~ 68 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEH------GARVTIIEGADVIGGCCVNVGCVPSKILIR 68 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCcceeEeccccccccHHHHH
Confidence 44566789999999999999999999999 999999999888999999999999887744
No 172
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=103.00 Aligned_cols=161 Identities=24% Similarity=0.309 Sum_probs=101.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccc-cC--ccCh--------HHHHHHhhhhhh
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS-GN--VFEP--------RALNELLPQWKQ 172 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~-g~--~i~~--------~~l~~l~~~~~~ 172 (644)
+.+..||+|||||+-|+++|+.|++. |.++.++|+.+.+-....+ |. .+-+ +-..+.++.|..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~------g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~ 77 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR------GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN 77 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc------CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999 9999999998754221111 11 1111 112344556655
Q ss_pred cCCCeeeeccCCcEEEec---------------------------cCC------ccccCCC---CCCCCcEEEcHHHHHH
Q 006466 173 EEAPIRVPVSSDKFWFLT---------------------------KDR------AFSLPSP---FSNRGNYVISLSQLVR 216 (644)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~---------------------------~~~------~~~~~~~---~~~~~~~~v~r~~l~~ 216 (644)
...............+.. +.. .+.+|.. .-+..+.++...+-.+
T Consensus 78 ~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk 157 (399)
T KOG2820|consen 78 LPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLK 157 (399)
T ss_pred ChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHH
Confidence 422111111111110000 000 1112211 1122244567777788
Q ss_pred HHHHHHHhcCCEEecCceEEEEEE-cCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 217 WLGGKAEELGVEIYPGFAASEILY-DADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~v~~-~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.|...+++.|+.++.|..|+.+.. ++++..++|.|.+ |..+.||.+|+|.|+|-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEecHHH
Confidence 999999999999999999988874 3345667888877 67799999999999884
No 173
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.96 E-value=5.2e-09 Score=114.89 Aligned_cols=188 Identities=22% Similarity=0.227 Sum_probs=107.3
Q ss_pred EECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC--CCCcccccCc--c-C---hH------HHHHHhhhhhhcCC--
Q 006466 112 IVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAHIISGNV--F-E---PR------ALNELLPQWKQEEA-- 175 (644)
Q Consensus 112 IVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~--~g~~~~~g~~--i-~---~~------~l~~l~~~~~~~~~-- 175 (644)
|||+|.||++||+.+++. |.+|+||||.+. .|+....+.. + . .+ ...+++.++.....
T Consensus 1 VVG~G~AGl~AA~~Aa~~------Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA------GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGR 74 (432)
T ss_pred CCcccHHHHHHHHHHHhC------CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCC
Confidence 799999999999999999 999999999874 3443332211 0 0 00 01122222221100
Q ss_pred --C--ee--eeccCCcEEEeccCCccccCCCCC------CCCcEE-EcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcC
Q 006466 176 --P--IR--VPVSSDKFWFLTKDRAFSLPSPFS------NRGNYV-ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA 242 (644)
Q Consensus 176 --~--~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~ 242 (644)
+ .. .....+.+.|+.+ .++.+..... ....+. -.-..+.+.|.+.+++.|++|+++++|++++.++
T Consensus 75 ~d~~l~~~~~~~s~~~i~wl~~-~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~ 153 (432)
T TIGR02485 75 TNESLSRLGIGRGSRDLRWAFA-HGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEA 153 (432)
T ss_pred CCHHHHHHHHhcchhHHHHHHh-CCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC
Confidence 0 00 0001112222221 1111110000 000111 1235688999999999999999999999998764
Q ss_pred -CCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcc---cccCcccceeEEEEEEee
Q 006466 243 -DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYALGIKEVWEI 318 (644)
Q Consensus 243 -~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~ 318 (644)
++.|++|...+ .+..+.||.||+|+|.++.....+.+.++.... ....+...|.|+++...+
T Consensus 154 ~~g~v~gv~~~~--------------~~~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~ 219 (432)
T TIGR02485 154 FDGAHDGPLTTV--------------GTHRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAE 219 (432)
T ss_pred CCCeEEEEEEcC--------------CcEEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHc
Confidence 57788887542 135799999999999999866655444443211 112344556677655444
Q ss_pred cC
Q 006466 319 DE 320 (644)
Q Consensus 319 ~~ 320 (644)
..
T Consensus 220 Ga 221 (432)
T TIGR02485 220 GA 221 (432)
T ss_pred Cc
Confidence 43
No 174
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.96 E-value=2.5e-08 Score=109.86 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=56.1
Q ss_pred cEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 206 NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
...|+...+.+.|.+.+.+ .|++++++++|+++..++++.+ .|.+.+. .+|+ ..+++||+||+|.|.+
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t---~~g~-------~~~i~Ad~VV~AAGaw 246 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDR---NTGE-------KREQVADYVFIGAGGG 246 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEec---CCCc-------eEEEEcCEEEECCCcc
Confidence 4568889999999999865 5899999999999987733433 3432110 0110 1268999999999999
Q ss_pred CcchHHHHHHcCCC
Q 006466 285 GSLSEKLIKNFKLR 298 (644)
Q Consensus 285 s~l~~~l~~~~~~~ 298 (644)
+ ..+.+.+|+.
T Consensus 247 S---~~La~~~Gi~ 257 (497)
T PRK13339 247 A---IPLLQKSGIP 257 (497)
T ss_pred h---HHHHHHcCCC
Confidence 6 4666677765
No 175
>PRK14694 putative mercuric reductase; Provisional
Probab=98.96 E-value=8.4e-09 Score=114.37 Aligned_cols=53 Identities=15% Similarity=0.407 Sum_probs=48.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (644)
..|||+||||||||++||+.|++. |++|+|||+. .+|+.|.+-+|++.+.+.+
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~------g~~v~lie~~-~~GGtc~n~GciPsk~l~~ 57 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER------GARVTLIERG-TIGGTCVNIGCVPSKIMIR 57 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEEcc-ccccceecCCccccHHHHH
Confidence 479999999999999999999999 9999999996 6899999999999887744
No 176
>PRK07233 hypothetical protein; Provisional
Probab=98.95 E-value=3.1e-07 Score=100.76 Aligned_cols=38 Identities=39% Similarity=0.559 Sum_probs=36.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
+|||||||++||+||+.|++. |++|+|+|+.+.+|+.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~------G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR------GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCCce
Confidence 599999999999999999999 99999999999999865
No 177
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.94 E-value=8e-09 Score=113.73 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=45.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC-CCCCcccccCccChHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRAL 163 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~-~~g~~~~~g~~i~~~~l 163 (644)
.||||||||||||++||+.|+++ |++|+|||+.+ .+|+.+.+.++++.+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~------g~~V~lie~~~~~~GG~~~~~gcip~k~l 54 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA------GWRVALIEQSNAMYGGTCINIGCIPTKTL 54 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC------CCeEEEEcCCCCccceeEeeccccchHHH
Confidence 59999999999999999999999 99999999986 47888888888887765
No 178
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.94 E-value=2e-08 Score=111.30 Aligned_cols=49 Identities=45% Similarity=0.727 Sum_probs=43.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHH
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRAL 163 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l 163 (644)
||||||||||||+++|..|++. |++|+|||+ +.+|+.+.+-++++.+.+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~------G~~v~lie~-~~~GG~~~~~gc~Psk~l 50 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL------GLKVALVEK-EYLGGTCLNVGCIPTKAL 50 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC------CCeEEEEec-CCCCCceeecCccchHHH
Confidence 8999999999999999999999 999999999 788998887777776543
No 179
>PLN02507 glutathione reductase
Probab=98.94 E-value=4.2e-09 Score=117.35 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=48.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcC---------CCCCCCcccccCccChHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk---------~~~~g~~~~~g~~i~~~~l~~ 165 (644)
.+|||+||||||+|+.+|..|+++ |++|+|||+ ...+|+.|+.-+|++.+.+..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~------G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~ 86 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF------GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVY 86 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHH
Confidence 469999999999999999999999 999999996 356899999999999888743
No 180
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.93 E-value=7.7e-09 Score=116.86 Aligned_cols=112 Identities=26% Similarity=0.463 Sum_probs=79.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
.|||+|||||||||+||+.|++. |++|+|||+. .+|+.+..... +
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~------g~~V~liE~~-~~GG~~~~~~~-----i----------------------- 48 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA------KLDTLIIEKD-DFGGQITITSE-----V----------------------- 48 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecC-CCCceEEeccc-----c-----------------------
Confidence 59999999999999999999999 9999999996 45553210000 0
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
..+|. .-.+....+.+.+.+++++.|++++ ...|+++..++ ....|.+.+
T Consensus 49 --------~~~pg------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~------------- 98 (555)
T TIGR03143 49 --------VNYPG------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR------------- 98 (555)
T ss_pred --------ccCCC------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC-------------
Confidence 00010 0013445778888888999999986 66788887654 334566543
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
+ .+.++.||+|+|+++.
T Consensus 99 --g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 99 --G-DYKTLAVLIATGASPR 115 (555)
T ss_pred --C-EEEEeEEEECCCCccC
Confidence 3 5889999999999764
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.93 E-value=8.9e-09 Score=115.41 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=81.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (644)
...|||+||||||||++||+.|++. |++|+|+|. .+|+..... . .+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~------G~~v~li~~--~~GG~~~~~-----~-------~~~------------- 256 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK------GLRTAMVAE--RIGGQVKDT-----V-------GIE------------- 256 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEec--CCCCccccC-----c-------Ccc-------------
Confidence 3469999999999999999999999 999999975 355532100 0 000
Q ss_pred cEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccc
Q 006466 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (644)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~ 264 (644)
. + ...+ .....++.+.|.+.+++.|++++.+++|+++..+++. ..|.+.+
T Consensus 257 ~--~------~~~~---------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~----------- 306 (515)
T TIGR03140 257 N--L------ISVP---------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLES----------- 306 (515)
T ss_pred c--c------cccC---------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECC-----------
Confidence 0 0 0000 0234677888888888899999999999999765532 3466554
Q ss_pred ccccceEEEcCEEEEecCCCC
Q 006466 265 NFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s 285 (644)
|..+.+|.+|+|+|++.
T Consensus 307 ----g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 307 ----GEVLKAKSVIVATGARW 323 (515)
T ss_pred ----CCEEEeCEEEECCCCCc
Confidence 56799999999999875
No 182
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.92 E-value=3.8e-09 Score=117.04 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=49.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCC--------CCCCCcccccCccChHHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--------AEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~--------~~~g~~~~~g~~i~~~~l~~l 166 (644)
.+||||||||||+|..||+.++++. |.+|+|||+. ..+|+.|++-+|++.+.|.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~-----g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~ 65 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY-----KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTG 65 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc-----CCEEEEEecccCccccccCCccCeecCcCCccHHHHHHH
Confidence 3699999999999999999999941 7999999984 468999999999999988554
No 183
>PRK13748 putative mercuric reductase; Provisional
Probab=98.92 E-value=1.3e-08 Score=115.68 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=49.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (644)
.+||||||||||||++||+.|++. |++|+|||+. .+|+.|++-+|++.+.+.+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~------G~~v~lie~~-~~GG~c~n~gciPsk~l~~~ 150 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ------GARVTLIERG-TIGGTCVNVGCVPSKIMIRA 150 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecC-cceeeccccCccccHHHHHH
Confidence 369999999999999999999999 9999999997 78999999999998877443
No 184
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=7.7e-09 Score=111.91 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=94.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccC--hHHHHHHhhhhhhcCCCeeeecc
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE--PRALNELLPQWKQEEAPIRVPVS 182 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~--~~~l~~l~~~~~~~~~~~~~~~~ 182 (644)
.+..+|+|||||||||++|..|.+. |++|+|+||.+.+|+....-...+ ... ++..+. ....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss---~Y~~l~-------tn~p 67 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE------GHEVVVFERTDDIGGLWKYTENVEVVHSS---VYKSLR-------TNLP 67 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC------CCCceEEEecCCccceEeecCcccccccc---hhhhhh-------ccCC
Confidence 3467999999999999999999999 999999999999998542110000 000 000000 0000
Q ss_pred CCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCC--EEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
.+-+.+ . ++|.+. +...+..++.++.++|.+.|+..++ .|.++++|..+....+| -|.|.+.+.+ +
T Consensus 68 Ke~~~~----~--dfpf~~-~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~~----~ 135 (448)
T KOG1399|consen 68 KEMMGY----S--DFPFPE-RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG-KWRVTTKDNG----T 135 (448)
T ss_pred hhhhcC----C--CCCCcc-cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC-ceeEEEecCC----c
Confidence 000000 0 122211 1245667788999999999999885 58899989888876643 4567776511 1
Q ss_pred CcccccccceEEEcCEEEEecCCC
Q 006466 261 SKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
. ..+.-+|.||+|+|.+
T Consensus 136 ~-------~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 136 Q-------IEEEIFDAVVVCTGHY 152 (448)
T ss_pred c-------eeEEEeeEEEEcccCc
Confidence 0 1467799999999987
No 185
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.91 E-value=1.3e-08 Score=113.40 Aligned_cols=145 Identities=23% Similarity=0.289 Sum_probs=86.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||||++||++|..|.+. |++|+++||.+.+||.........+.. ..+++ .+......+.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~------g~~~~~fE~~~~iGG~W~~~~~~~~g~-~~~y~-------sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE------GLEVTCFEKSDDIGGLWRYTENPEDGR-SSVYD-------SLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT------T-EEEEEESSSSSSGGGCHSTTCCCSE-GGGST-------T-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCeEEecCCCCCccCeeCCcCCCCc-ccccc-------ceEEeeCchHhc
Confidence 3699999999999999999998 999999999999998432110000000 00000 000011111111
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCC--EEecCceEEEEEEcCCC---cEEEEEeCcCccccCCCc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADN---KVIGIGTNDMGIAKDGSK 262 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~v~~~~~g---~v~gV~~~d~g~~~~G~~ 262 (644)
+. ++|.+. .... ..++.++.++|.+.|+..++ .|.++++|+++...++. ..+.|++.+ +|+
T Consensus 68 fs------dfp~p~-~~p~-f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~- 133 (531)
T PF00743_consen 68 FS------DFPFPE-DYPD-FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----DGK- 133 (531)
T ss_dssp CT------TS-HCC-CCSS-SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----TTE-
T ss_pred CC------CcCCCC-CCCC-CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----CCe-
Confidence 10 122111 1112 36889999999999999885 49999999999886542 246677653 232
Q ss_pred ccccccceEEEcCEEEEecCCCCc
Q 006466 263 KENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..+-..|.||+|+|.++.
T Consensus 134 ------~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 134 ------EETEEFDAVVVATGHFSK 151 (531)
T ss_dssp ------EEEEEECEEEEEE-SSSC
T ss_pred ------EEEEEeCeEEEcCCCcCC
Confidence 134568999999998863
No 186
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.90 E-value=3.8e-09 Score=117.22 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=85.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC--------CCCCcccccCccChHHHHHHhhhhhhcCCCee
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALNELLPQWKQEEAPIR 178 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~--------~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~ 178 (644)
+||||||||||+|+.+|+.|++. |.+|+|||+.. .+|+.|++-+|++.+.|.............
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~------G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~-- 73 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY------GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDS-- 73 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhh--
Confidence 58999999999999999999999 99999999741 478999999999998875432221111000
Q ss_pred eeccCCcEEEe-ccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc
Q 006466 179 VPVSSDKFWFL-TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (644)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~ 257 (644)
..+.+. .....++++..+...... ...+.....+.++..||+++.|... + .++ +.| .|...
T Consensus 74 -----~~~g~~~~~~~~~d~~~~~~~~~~~---v~~~~~~~~~~~~~~~v~~i~G~a~--f-~~~-~~v-~v~~~----- 135 (484)
T TIGR01438 74 -----RNYGWNVEETVKHDWNRLSEAVQNH---IGSLNWGYRVALREKKVNYENAYAE--F-VDK-HRI-KATNK----- 135 (484)
T ss_pred -----hhcCcccCCCcccCHHHHHHHHHHH---HHHHHHHHHHHHhhCCcEEEEEEEE--E-cCC-CEE-EEecc-----
Confidence 000000 000011111100000000 0122333444566789999988653 2 222 333 34322
Q ss_pred cCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 258 KDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 258 ~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
+|+ +.++.+|.||+|+|.++.
T Consensus 136 -~g~-------~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 136 -KGK-------EKIYSAERFLIATGERPR 156 (484)
T ss_pred -CCC-------ceEEEeCEEEEecCCCCC
Confidence 222 247999999999998764
No 187
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.89 E-value=2.9e-09 Score=115.50 Aligned_cols=147 Identities=27% Similarity=0.367 Sum_probs=86.6
Q ss_pred EEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc-ccC--c--cChHHHHHHhhhhhhcCCC----eeeec
Q 006466 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGN--V--FEPRALNELLPQWKQEEAP----IRVPV 181 (644)
Q Consensus 111 vIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~--~--i~~~~l~~l~~~~~~~~~~----~~~~~ 181 (644)
+|||||+||++||+.|++. |++|+|+||++.+|+.+. +|+ + .+.....++...+...... +....
T Consensus 1 vIIGgG~aGl~aAi~aa~~------G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE------GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc------CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 6999999999999999999 999999999998876542 231 1 1111111111111100000 00000
Q ss_pred cCCcEEEeccCCccccCCCCCCCCcEEE----cHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc
Q 006466 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVI----SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (644)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~ 257 (644)
..+.+.|+. ..++.+.. ... +... ....+.+.|.+.+++.|+++++++.|+++..++ + .+.|++.
T Consensus 75 ~~d~~~~~~-~~Gv~~~~--~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~~----- 143 (400)
T TIGR00275 75 NKDLIDFFE-SLGLELKV--EED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVETS----- 143 (400)
T ss_pred HHHHHHHHH-HcCCeeEE--ecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEEC-----
Confidence 000011111 01111100 000 1111 347788999999999999999999999997654 3 3456653
Q ss_pred cCCCcccccccceEEEcCEEEEecCCCC
Q 006466 258 KDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 258 ~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
+.++.+|.||+|+|.++
T Consensus 144 -----------~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 144 -----------GGEYEADKVILATGGLS 160 (400)
T ss_pred -----------CcEEEcCEEEECCCCcc
Confidence 35689999999999876
No 188
>PLN02612 phytoene desaturase
Probab=98.88 E-value=4.1e-07 Score=103.02 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCC
Q 006466 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
.+.+.|.+.+++.|++|+++++|++|..++++.+++|++.+ |.++.||.||.|+..
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 45677777777889999999999999987777777788765 667999999999864
No 189
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.87 E-value=1.1e-08 Score=113.52 Aligned_cols=52 Identities=35% Similarity=0.609 Sum_probs=47.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (644)
||||||||||||++||+.|+++ |++|+||||.. +|+.|++-+|++.+.+.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~------g~~v~lie~~~-~GG~c~n~gciPsk~l~~~ 52 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL------GASVAMVERGP-LGGTCVNVGCVPSKMLLRA 52 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-ccCCeeeecEEccHHHHHH
Confidence 7999999999999999999999 99999999975 8998998899998887543
No 190
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=1.5e-08 Score=112.38 Aligned_cols=51 Identities=45% Similarity=0.621 Sum_probs=46.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~ 164 (644)
+|||+||||||||++||+.|++. |.+|+|||+. .+|+.|..-++++.+.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~ 54 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL------GLKTAVVEKK-YWGGVCLNVGCIPSKALL 54 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-CCCCceecCCccccHHHH
Confidence 59999999999999999999999 9999999985 689999888899877653
No 191
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.86 E-value=6.3e-09 Score=116.05 Aligned_cols=52 Identities=19% Similarity=0.391 Sum_probs=46.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC--------CCCCcccccCccChHHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALN 164 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~--------~~g~~~~~g~~i~~~~l~ 164 (644)
.|||+||||||||++||+.|+++ |++|+|||+.. .+|+.|++-+|++.+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~------G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~ 64 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH------GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMH 64 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCeEEEEeccCCCCccccccccceeccccccchHHHH
Confidence 58999999999999999999999 99999999731 489999999999987653
No 192
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.85 E-value=3.1e-08 Score=110.78 Aligned_cols=64 Identities=27% Similarity=0.352 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 211 LSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 211 r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
...+.+.|.+.+++. ||+++.++.++++..++ |+|+||.+.+ ++. ...+.||.||+|+|..+.+
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~~~-------~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAAT-----AGG-------PVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEe-----CCe-------EEEEECCEEEEcCCCCcCC
Confidence 356888898888775 89999999999998664 7888887653 111 1368999999999998753
No 193
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.84 E-value=6.7e-09 Score=114.50 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=43.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (644)
+|||||||+||+|..+|.. +. |.+|+|||+. .+|+.|++-+|++++.|.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~------g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~ 52 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYA 52 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC------CCeEEEEeCC-CCCCeeeccCccchHHHHHH
Confidence 5899999999999988643 45 9999999985 68999999999999987543
No 194
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.84 E-value=3.9e-08 Score=111.98 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=50.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCC-CCCCCcccccCccChHHHHHHh
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEVGAHIISGNVFEPRALNELL 167 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~-~~~g~~~~~g~~i~~~~l~~l~ 167 (644)
..+|||||||+||+|.++|+.++++ |++|+|||+. ..+|+.|+.-+|++.+.|....
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~------G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a 171 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMER------GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYAT 171 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCccccceeEeCCcchHHHHHHH
Confidence 3479999999999999999999999 9999999975 3689999999999999875543
No 195
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.83 E-value=1.5e-06 Score=96.27 Aligned_cols=42 Identities=36% Similarity=0.488 Sum_probs=37.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCC--CCeEEEEcCCCCCCCccc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNV--DLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~--G~~V~viEk~~~~g~~~~ 153 (644)
.||+|||||++||+||+.|++. .+ |.+|+|+|+++.+||.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~----~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE----IPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc----CCCCCCcEEEEEcCCcCcceEE
Confidence 5899999999999999999986 23 799999999999998754
No 196
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.82 E-value=3.5e-07 Score=92.14 Aligned_cols=41 Identities=41% Similarity=0.588 Sum_probs=34.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~ 148 (644)
...||||||||..|++.|++|++++.. .|++|+|+||....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd--~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARD--EGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhc--CCceEEEEeccCcc
Confidence 468999999999999999999986433 37999999998753
No 197
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.80 E-value=1.7e-06 Score=95.59 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
..+.+.|.+.+++.|++|++++.|++|..++++.+++|++.+ .+|+. ..++.||.||.|...+
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~~------~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQR------RFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCCc------eeEEECCEEEEcCCHH
Confidence 356677788888889999999999999877767787888754 01110 1168999999999764
No 198
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.79 E-value=5.2e-08 Score=116.01 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=88.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC-ccccc-Ccc-----C-hHHHHHHhhhhhhcCC
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA-HIISG-NVF-----E-PRALNELLPQWKQEEA 175 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~-~~~~g-~~i-----~-~~~l~~l~~~~~~~~~ 175 (644)
+.+++||||||||.|||+||+.+++. |.+|+||||.....+ ....| +.+ . ....+..+.+......
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~------G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~ 83 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEH------GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRAND 83 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHC------CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcC
Confidence 44679999999999999999999998 999999999874211 11111 011 0 0111112211111000
Q ss_pred C------eeeec--cCCcEEEeccCCccccCCC---------CCCCCcEE---EcHHHHHHHHHHHHHhc----CCEEec
Q 006466 176 P------IRVPV--SSDKFWFLTKDRAFSLPSP---------FSNRGNYV---ISLSQLVRWLGGKAEEL----GVEIYP 231 (644)
Q Consensus 176 ~------~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---v~r~~l~~~L~~~a~~~----Gv~i~~ 231 (644)
. ....+ ..+.+.|+.. .++.|... ....+.+. -....+.+.|.+.+.+. +|++..
T Consensus 84 gl~d~~~v~~~~~~a~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~ 162 (897)
T PRK13800 84 GIVNQRTVYQTATRGFAMVQRLER-YGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIEN 162 (897)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHH-cCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEe
Confidence 0 00000 0011111110 11111100 00000111 02244555666655543 688988
Q ss_pred CceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 232 GFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 232 g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
++.+.+++.+ +|++.||..-+. .+|+. ..+.||.||+|||+.+.+
T Consensus 163 ~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 163 RLMPVRVLTE-GGRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL 207 (897)
T ss_pred ceeeEEEEee-CCEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence 8888888876 478889876431 23332 568999999999998864
No 199
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=4e-08 Score=108.84 Aligned_cols=53 Identities=36% Similarity=0.593 Sum_probs=47.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (644)
++||||||||||||+++|+.|++. |++|+|||+ ..+|+.+..-+|++.+.+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~------g~~v~lie~-~~~GG~~~~~gc~psk~l~~ 54 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL------GKKVALIEK-GPLGGTCLNVGCIPSKALIA 54 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-CccccceeccceeeHHHHHH
Confidence 359999999999999999999999 999999999 67899888888998887644
No 200
>PRK07846 mycothione reductase; Reviewed
Probab=98.78 E-value=2.2e-08 Score=110.40 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=44.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (644)
+||||||||||+|.+||.. +. |.+|+|||+. .+|+.|++-+|++++.|.+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~------G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~ 51 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYA 51 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC------CCeEEEEeCC-CCCCcccCcCcchhHHHHHH
Confidence 3899999999999998865 35 9999999985 58999999999999987544
No 201
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.78 E-value=1.5e-07 Score=92.80 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=92.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc-cccCccC----h---HHH----HHHhhhhhhcC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P---RAL----NELLPQWKQEE 174 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~----~---~~l----~~l~~~~~~~~ 174 (644)
...|+|||||+.|.++|+.|++...-+-..+.|+|+|+..-.++.. ..++.+. + ..| -.|...+.+.-
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 4689999999999999999999811001128999999987655432 1222211 1 111 11111111110
Q ss_pred CC-----------eeeecc---------CCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCc
Q 006466 175 AP-----------IRVPVS---------SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGF 233 (644)
Q Consensus 175 ~~-----------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~ 233 (644)
.. .....+ .+...|+.....-+....-......+++...|++.+++.|++.| |++.+|.
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gk 169 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGK 169 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEee
Confidence 00 000000 01111111100000001111122457899999999999999876 9999995
Q ss_pred eEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 234 AASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 234 ~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
|.+|. ++.+++.+|-..+ . ........++.+|+|.|.|+.
T Consensus 170 -v~ev~-dEk~r~n~v~~ae----~-------~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 170 -VKEVS-DEKHRINSVPKAE----A-------EDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred -eEEee-cccccccccchhh----h-------cCceEEeeeeEEEEecCCCch
Confidence 88886 4446665554331 0 011456788999999999864
No 202
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.78 E-value=1.8e-08 Score=111.51 Aligned_cols=52 Identities=27% Similarity=0.487 Sum_probs=47.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHh
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL 167 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~ 167 (644)
+|+||||||||++||+.|++. |++|+||||.+ +|+.|++.+|++.+.+.+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~------g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a 53 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN------GKNVTLIDEAD-LGGTCLNEGCMPTKSLLESA 53 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEECCc-ccccCCCCccccchHHHHHH
Confidence 799999999999999999999 99999999974 78999999999998875543
No 203
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.77 E-value=6.6e-08 Score=107.11 Aligned_cols=145 Identities=20% Similarity=0.317 Sum_probs=85.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHH---hhhhhhcCCCeeeeccCCc
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL---LPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l---~~~~~~~~~~~~~~~~~~~ 185 (644)
||+|||||++|+.+|..|+++ |.+|+|+||.. +|+.|+.-+|++.+.+.+. ...+.... ........
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~------g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~-~~g~~~~~-- 72 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL------GADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAA-ELGIRFID-- 72 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC------CCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHH-hCCccccc--
Confidence 899999999999999999999 99999999975 7999999999998876433 22221100 00000000
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEE--EcCCCcEEEEEeCcCccccCCCcc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEIL--YDADNKVIGIGTNDMGIAKDGSKK 263 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~--~~~~g~v~gV~~~d~g~~~~G~~~ 263 (644)
.....++++..+..... -...+.+.+.+.+++.||+++.+.. +.+. .++ . .+.|.+.+ |+
T Consensus 73 ----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~-~-~v~V~~~~------g~-- 134 (466)
T PRK07845 73 ----DGEARVDLPAVNARVKA---LAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGP-H-RVKVTTAD------GG-- 134 (466)
T ss_pred ----CcccccCHHHHHHHHHH---HHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCC-C-EEEEEeCC------Cc--
Confidence 00000111100000000 0112234556667778999998863 3322 222 2 23455433 11
Q ss_pred cccccceEEEcCEEEEecCCCCc
Q 006466 264 ENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..++.+|.||+|+|+++.
T Consensus 135 -----~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 135 -----EETLDADVVLIATGASPR 152 (466)
T ss_pred -----eEEEecCEEEEcCCCCCC
Confidence 136999999999999874
No 204
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.77 E-value=7.2e-08 Score=79.43 Aligned_cols=79 Identities=27% Similarity=0.351 Sum_probs=65.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (644)
.|+|||||+.|+.+|..|++. |.+|+|+++.+.+... +
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~~~------~------------------------------ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSDRLLPG------F------------------------------ 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSSTT------S------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccchhhhh------c------------------------------
Confidence 389999999999999999999 9999999999876420 0
Q ss_pred eccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006466 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (644)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d 253 (644)
...+.+.+.+.+++.||++++++.++++..++++ +. |+++|
T Consensus 39 ----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 39 ----------------------DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp ----------------------SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred ----------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 1344666788888899999999999999999877 65 88765
No 205
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.77 E-value=6.7e-06 Score=90.76 Aligned_cols=40 Identities=35% Similarity=0.591 Sum_probs=36.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC--CeEEEEcCCCCCCCcccc
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD--LSVCVVEKGAEVGAHIIS 154 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G--~~V~viEk~~~~g~~~~~ 154 (644)
+|+|||||+|||+||+.|++. | ++|+|+|+++.+||.+.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~------G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK------GPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh------CCCCCEEEEEcCCCCcceEEE
Confidence 699999999999999999998 6 899999999999987643
No 206
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.75 E-value=1.5e-07 Score=104.68 Aligned_cols=57 Identities=30% Similarity=0.381 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCC
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
-+.|.+.|.+.+++.|++|+++++|++|..++ |+.++|.+.+ |..+.+|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~---------------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSD---------------GENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccc---------------cceeccceeEecCch
Confidence 47889999999999999999999999999887 5555666654 457899999988776
No 207
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.75 E-value=1.5e-06 Score=96.39 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=36.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
+|+|||||++||+||+.|++.....+.|.+|+|+|+++.+||.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 699999999999999999986110012489999999999998764
No 208
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.75 E-value=2e-06 Score=95.47 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCEEecCceEEEEEEcC--CC--cEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 214 LVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~--~g--~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
+.+.|.+.+++.|++|+.+++|++|..++ ++ .+++|.+.+ |+ .+.++.||.||.|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~------g~------~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK------PE------GKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec------CC------cceEEECCEEEECCChHH
Confidence 45667788888999999999999998764 23 267777643 11 024689999999999764
No 209
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.73 E-value=1.1e-07 Score=111.61 Aligned_cols=111 Identities=26% Similarity=0.241 Sum_probs=85.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..++|||||+.|+.+|..|++. |.+|+|+|+.+.+.... +
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~------G~~VtvVe~~~~ll~~~-----l----------------------------- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL------GVETHVIEFAPMLMAEQ-----L----------------------------- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeccccchhhh-----c-----------------------------
Confidence 4699999999999999999999 99999999877532100 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-....+.|.+.+++.||++++++.++++..++++.+..|.+.|
T Consensus 186 -----------------------d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d-------------- 228 (847)
T PRK14989 186 -----------------------DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD-------------- 228 (847)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC--------------
Confidence 0223456777888899999999999999765434455677665
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
|.++.+|.||+|.|.++.. .|.+..++.
T Consensus 229 -G~~i~~D~Vv~A~G~rPn~--~L~~~~Gl~ 256 (847)
T PRK14989 229 -GSELEVDFIVFSTGIRPQD--KLATQCGLA 256 (847)
T ss_pred -CCEEEcCEEEECCCcccCc--hHHhhcCcc
Confidence 6789999999999999863 366666654
No 210
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.73 E-value=2.7e-07 Score=101.91 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEc-CC--CcEEEEEeCcCccccCCCcccccccc-eEEEcCEEEEecCCCCc
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYD-AD--NKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGS 286 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~-~~--g~v~gV~~~d~g~~~~G~~~~~~~~g-~~i~a~~vV~A~G~~s~ 286 (644)
..|..-|.+.+++.||+|+++++|++|..+ ++ ++|++|.+.. +|+. .. ....+|+||+|+|+...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-----~~~~-----~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-----NGKE-----ETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-----CCce-----eEEEecCCCEEEEeCCcCcc
Confidence 566778888999999999999999999986 32 5788888753 2221 01 23568999999998754
No 211
>PLN02576 protoporphyrinogen oxidase
Probab=98.72 E-value=6.3e-06 Score=92.26 Aligned_cols=42 Identities=40% Similarity=0.554 Sum_probs=37.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
.+||+|||||++||+||+.|++.. |++|+|+|+++.+||.+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~-----g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKH-----GVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhc-----CCCEEEEecCCCCCCcee
Confidence 579999999999999999999861 699999999999998754
No 212
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.71 E-value=2.6e-08 Score=97.11 Aligned_cols=115 Identities=30% Similarity=0.437 Sum_probs=72.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (644)
||||||||+||+++|..|++. +.+|+|+|+.+.... ...++....+.+..+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~------~~~v~ii~~~~~~~~---~~~~~~~~~~~~~~~~~------------------ 53 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP------GAKVLIIEKSPGTPY---NSGCIPSPLLVEIAPHR------------------ 53 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEESSSSHHHH---HHSHHHHHHHHHHHHHH------------------
T ss_pred CEEEEecHHHHHHHHHHHhcC------CCeEEEEeccccccc---ccccccccccccccccc------------------
Confidence 799999999999999999988 999999988764321 11222211111110000
Q ss_pred eccCCccccCCCCCCCCcEEEcHHHHH--H--HHHHHHHhcCCEEecCceEEEEEEcCCCcE----EEEEeCcCccccCC
Q 006466 189 LTKDRAFSLPSPFSNRGNYVISLSQLV--R--WLGGKAEELGVEIYPGFAASEILYDADNKV----IGIGTNDMGIAKDG 260 (644)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~r~~l~--~--~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v----~gV~~~d~g~~~~G 260 (644)
..+. + .+.+++...+++++.+.++.++.... +.+ ..+... ..+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~~-----~~~ 104 (201)
T PF07992_consen 54 -----------------------HEFLPARLFKLVDQLKNRGVEIRLNAKVVSIDPES-KRVVCPAVTIQVV-----ETG 104 (201)
T ss_dssp -----------------------HHHHHHHHGHHHHHHHHHTHEEEHHHTEEEEEEST-TEEEETCEEEEEE-----ETT
T ss_pred -----------------------cccccccccccccccccceEEEeeccccccccccc-cccccCcccceee-----ccC
Confidence 0000 0 34555566789998889999997765 321 112110 011
Q ss_pred CcccccccceEEEcCEEEEecCCCCc
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
++.++.+|+||+|+|..+.
T Consensus 105 -------~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 105 -------DGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp -------TEEEEEEEEEEEESTEEEE
T ss_pred -------CceEecCCeeeecCccccc
Confidence 2578999999999996643
No 213
>PRK10262 thioredoxin reductase; Provisional
Probab=98.70 E-value=1.7e-07 Score=98.82 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=75.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
..+||+|||||||||+||+.|+++ |++|++||+. ..|+.......
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~------g~~~~~ie~~-~~gg~~~~~~~---------------------------- 49 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA------NLQPVLITGM-EKGGQLTTTTE---------------------------- 49 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC------CCCeEEEEee-cCCCceecCce----------------------------
Confidence 468999999999999999999999 9999999965 45542210000
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
...+|.. ...++...+.+.+.+.+...++++..+ .|+.+...+ + .+.+...+
T Consensus 50 --------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~-~-~~~v~~~~------------ 101 (321)
T PRK10262 50 --------VENWPGD-----PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN-R-PFRLTGDS------------ 101 (321)
T ss_pred --------ECCCCCC-----CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC-C-eEEEEecC------------
Confidence 0001100 001234566777888888888888776 466776554 3 22343322
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..+.+|.||+|+|.+..
T Consensus 102 ----~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 102 ----GEYTCDALIIATGASAR 118 (321)
T ss_pred ----CEEEECEEEECCCCCCC
Confidence 36899999999998863
No 214
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.70 E-value=1.2e-07 Score=92.99 Aligned_cols=142 Identities=26% Similarity=0.372 Sum_probs=86.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc----cccCccC-------h--HHHHHHhhhhhhcC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFE-------P--RALNELLPQWKQEE 174 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~----~~g~~i~-------~--~~l~~l~~~~~~~~ 174 (644)
.+|+|||+|+||++||..|+.. |.+|+|+||+.-+|+.. +.++.++ + ..+.+....|.+.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a------G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~g 75 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA------GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDG 75 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc------CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCC
Confidence 3699999999999999999999 99999999999887753 1233333 2 23445555555542
Q ss_pred CCeeeeccCCcEEEeccCCccccCCCCCCCCcEE--EcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeC
Q 006466 175 APIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN 252 (644)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~ 252 (644)
.. .+....++-+.... .+..-... .|+ -..+.|.+.|. ...+|.++++|+++...++ .+.+.++
T Consensus 76 lV---~~W~~~~~~~~~~~---~~~~~d~~-pyvg~pgmsalak~LA-----tdL~V~~~~rVt~v~~~~~--~W~l~~~ 141 (331)
T COG3380 76 LV---DVWTPAVWTFTGDG---SPPRGDED-PYVGEPGMSALAKFLA-----TDLTVVLETRVTEVARTDN--DWTLHTD 141 (331)
T ss_pred ce---eeccccccccccCC---CCCCCCCC-ccccCcchHHHHHHHh-----ccchhhhhhhhhhheecCC--eeEEEec
Confidence 21 12222222222111 11110000 122 23455666554 2467899999999987753 4678875
Q ss_pred cCccccCCCcccccccceEEEcCEEEEecCC
Q 006466 253 DMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 253 d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
+ | +....+|.||+|-=.
T Consensus 142 ~------g--------~~~~~~d~vvla~PA 158 (331)
T COG3380 142 D------G--------TRHTQFDDVVLAIPA 158 (331)
T ss_pred C------C--------CcccccceEEEecCC
Confidence 5 2 245788999988654
No 215
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.69 E-value=1e-07 Score=106.61 Aligned_cols=166 Identities=21% Similarity=0.319 Sum_probs=95.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccccc-CccC-----hH-----HHHHHhhh-hhh
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG-NVFE-----PR-----ALNELLPQ-WKQ 172 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g-~~i~-----~~-----~l~~l~~~-~~~ 172 (644)
..++||||||||.|||.||+.++.. |++|+|+||....++++..+ +.+. .. ..+..+.+ +..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~------g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg 77 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEA------GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKG 77 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhc------CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhc
Confidence 4579999999999999999999999 99999999999887776421 1111 00 11111100 000
Q ss_pred cCC-----Ceee--eccCCcEEEec---------cCCcc---ccCCCCCCCCcEEEc--HHHHHHHHHHHHHh-cCCEEe
Q 006466 173 EEA-----PIRV--PVSSDKFWFLT---------KDRAF---SLPSPFSNRGNYVIS--LSQLVRWLGGKAEE-LGVEIY 230 (644)
Q Consensus 173 ~~~-----~~~~--~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~v~--r~~l~~~L~~~a~~-~Gv~i~ 230 (644)
.+. .+.. ......+.++. ....+ .+......+..|... -..+...|.+++.+ .+++++
T Consensus 78 ~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~ 157 (562)
T COG1053 78 GDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIF 157 (562)
T ss_pred cCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhh
Confidence 000 0000 00000011110 00000 000000001122222 25578888888887 567899
Q ss_pred cCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 231 ~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
.+..+.++..++++.+.||..-++ .+|+. ..+++|.||+|+|+.+.
T Consensus 158 ~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~ 203 (562)
T COG1053 158 DEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGR 203 (562)
T ss_pred hhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceE
Confidence 999999999887665777775542 33332 56889999999999884
No 216
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=2e-08 Score=107.45 Aligned_cols=144 Identities=17% Similarity=0.292 Sum_probs=84.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccccc---CccCh----HHHHHHhhhhhhcCCCeee
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG---NVFEP----RALNELLPQWKQEEAPIRV 179 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g---~~i~~----~~l~~l~~~~~~~~~~~~~ 179 (644)
.|||||||||-||+.||...+|. |.+++++--+...-+...|- +.+.. +.++.|-..++.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm------G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~------- 70 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM------GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGK------- 70 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc------CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHH-------
Confidence 59999999999999999999999 99999988765422221111 11111 111111111110
Q ss_pred eccC--CcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCcc
Q 006466 180 PVSS--DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (644)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~ 256 (644)
..+. -.+..+...++-.+- .....+++..+.+++.+.++.. ++.++.+ .|++++.+++.+|+||.+.+
T Consensus 71 ~~D~~~IQ~r~LN~sKGPAVr-----a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--- 141 (621)
T COG0445 71 AADKAGIQFRMLNSSKGPAVR-----APRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--- 141 (621)
T ss_pred hhhhcCCchhhccCCCcchhc-----chhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC---
Confidence 1111 111222211111000 0022345555556666666553 5788766 58888876644689999987
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCC
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
|..+.|+.||+++|.+
T Consensus 142 ------------G~~~~a~aVVlTTGTF 157 (621)
T COG0445 142 ------------GPEFHAKAVVLTTGTF 157 (621)
T ss_pred ------------CCeeecCEEEEeeccc
Confidence 8899999999999976
No 217
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.67 E-value=2.8e-06 Score=92.08 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.++.+.|.+.+++.|++++.+++|+++..++ +.+..|.+.+ |. ...++||.||+|+|.+.
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRN------HG-------DIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeC------Cc-------eEEEECCEEEEeCCCcc
Confidence 4577888888889999999999999998765 4565554332 21 25699999999999764
No 218
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.67 E-value=2.6e-07 Score=100.24 Aligned_cols=108 Identities=27% Similarity=0.358 Sum_probs=82.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+....
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtlv~~~~~~l~~~----------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR------RCKVTVIELAATVMGRN----------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCcchhhh-----------------------------------
Confidence 4799999999999999999998 99999999987543210
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
....+.+.+.+.+++.||+++++++++++.. + +.+ .|.+.+
T Consensus 184 ----------------------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~-------------- 224 (396)
T PRK09754 184 ----------------------APPPVQRYLLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQS-------------- 224 (396)
T ss_pred ----------------------cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECC--------------
Confidence 0023355677777889999999999999865 2 323 466655
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
|.++.+|.||.|.|..+. ..+.+..++.
T Consensus 225 -g~~i~aD~Vv~a~G~~pn--~~l~~~~gl~ 252 (396)
T PRK09754 225 -GETLQADVVIYGIGISAN--DQLAREANLD 252 (396)
T ss_pred -CCEEECCEEEECCCCChh--hHHHHhcCCC
Confidence 668999999999999874 3455556654
No 219
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.67 E-value=4.4e-06 Score=88.50 Aligned_cols=42 Identities=45% Similarity=0.609 Sum_probs=39.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
...||||||+|.+||++|+.|.+. |++|+|+|-++.+|+.+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka------G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA------GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc------CcEEEEEeccCCcCceeE
Confidence 468999999999999999999999 999999999999998764
No 220
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.66 E-value=1.9e-08 Score=106.35 Aligned_cols=153 Identities=29% Similarity=0.417 Sum_probs=81.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc---cccCccChHHHHHHhhhhhhcCCCeeeeccC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (644)
.+|+|+||.||++|++|+.|.... +.+++.+||.+....|. +.|..+....+..|. . ...+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-----~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlv----t----~~~P~s~ 68 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-----DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLV----T----LRDPTSP 68 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH--------EEEEES-SS--TTGGG--SS-B-SS-TTSSSS----T----TT-TTST
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-----CCCEEEEecCCCCCcCCccCCCCCccccccccccC----c----CcCCCCc
Confidence 489999999999999999999981 59999999999876653 122222211111100 0 0000000
Q ss_pred CcE-EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCC--cEEEEEeCcCccccCC
Q 006466 184 DKF-WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN--KVIGIGTNDMGIAKDG 260 (644)
Q Consensus 184 ~~~-~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g--~v~gV~~~d~g~~~~G 260 (644)
-.+ .++.....+. .+-+.+.+.++|.++.++|.-.+++.+-.+.++.+|++|..++++ ..+.|.+.+ .+|
T Consensus 69 ~sflnYL~~~~rl~---~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~~g 141 (341)
T PF13434_consen 69 FSFLNYLHEHGRLY---EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----SDG 141 (341)
T ss_dssp TSHHHHHHHTT-HH---HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----TTS
T ss_pred ccHHHHHHHcCChh---hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----cCC
Confidence 000 1111111100 000112334689999999999888887668899999999987654 356677743 333
Q ss_pred CcccccccceEEEcCEEEEecCCCCc
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
+ +.++.|+.||+|+|..+.
T Consensus 142 ~-------~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 142 D-------GETYRARNVVLATGGQPR 160 (341)
T ss_dssp --------EEEEEESEEEE----EE-
T ss_pred C-------eeEEEeCeEEECcCCCCC
Confidence 3 578999999999995543
No 221
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.66 E-value=6.1e-07 Score=95.23 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=61.3
Q ss_pred EEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 207 YVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 207 ~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.-|+=+.|.+.|.+.+.+. |++++++++|++|...+||. |.|.+.| ..+|+ ..+++|++|++..|+.+
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~---~~~~~-------~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKD---LKTGE-------KREVRAKFVFVGAGGGA 244 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEe---cCCCC-------eEEEECCEEEECCchHh
Confidence 3467799999999999887 89999999999999998773 4566554 12333 36899999999999886
Q ss_pred cchHHHHHHcCCCc
Q 006466 286 SLSEKLIKNFKLRE 299 (644)
Q Consensus 286 ~l~~~l~~~~~~~~ 299 (644)
. .|.++.|+++
T Consensus 245 L---~LLqksgi~e 255 (488)
T PF06039_consen 245 L---PLLQKSGIPE 255 (488)
T ss_pred H---HHHHHcCChh
Confidence 4 5566777753
No 222
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.64 E-value=2.3e-07 Score=108.90 Aligned_cols=109 Identities=25% Similarity=0.328 Sum_probs=83.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~------G~~Vtvv~~~~~ll~~----------~l------------------------ 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL------GMDVSVIHHAPGLMAK----------QL------------------------ 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEccCCchhhh----------hc------------------------
Confidence 4799999999999999999999 9999999987643210 00
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||++++++.++++..+ +.+.+|.+.|
T Consensus 181 -----------------------d~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d-------------- 221 (785)
T TIGR02374 181 -----------------------DQTAGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKD-------------- 221 (785)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECC--------------
Confidence 0123455677778899999999999988643 4466787766
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
|.++.+|.||.|.|.++.. .+.+..++.
T Consensus 222 -G~~i~~D~Vi~a~G~~Pn~--~la~~~gl~ 249 (785)
T TIGR02374 222 -GSSLEADLIVMAAGIRPND--ELAVSAGIK 249 (785)
T ss_pred -CCEEEcCEEEECCCCCcCc--HHHHhcCCc
Confidence 6789999999999998853 355555554
No 223
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.64 E-value=4.7e-08 Score=107.93 Aligned_cols=175 Identities=23% Similarity=0.254 Sum_probs=127.8
Q ss_pred chhhhhhhccccccccccc-cccccCCCCCCCCCccccCCCCCccCCCCCCCcccccccccccccccccccccccccccc
Q 006466 24 FVHSIFRLNQTNNLQSQSS-LANSIKTPSGYSPFRHFNQNPCFFSSGYFPNGVNLKGFGRNESGVSCAKLFFRSFCSEMC 102 (644)
Q Consensus 24 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (644)
.+..+++.++.+....... .++.+..++||.|+..+++.....+..++....+ ..+.+.
T Consensus 81 ~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D--------------------~~am~~ 140 (793)
T COG1251 81 KVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDD--------------------VEAMLD 140 (793)
T ss_pred eeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHH--------------------HHHHHH
Confidence 5777888888888877765 4999999999999888877777666665554221 111110
Q ss_pred cccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeecc
Q 006466 103 RESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (644)
Q Consensus 103 ~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (644)
-....-..+|||||.-||.+|..|.+. |++|.|++-.+.+-.. +|.
T Consensus 141 ~ar~~~~avVIGGGLLGlEaA~~L~~~------Gm~~~Vvh~~~~lMer-------------QLD--------------- 186 (793)
T COG1251 141 CARNKKKAVVIGGGLLGLEAARGLKDL------GMEVTVVHIAPTLMER-------------QLD--------------- 186 (793)
T ss_pred HHhccCCcEEEccchhhhHHHHHHHhC------CCceEEEeecchHHHH-------------hhh---------------
Confidence 001122379999999999999999999 9999999977643210 000
Q ss_pred CCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCc
Q 006466 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (644)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~ 262 (644)
..-...|....++.|++++++..++++.. ++.+.+|.++|
T Consensus 187 -----------------------------~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D--------- 226 (793)
T COG1251 187 -----------------------------RTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD--------- 226 (793)
T ss_pred -----------------------------hHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecC---------
Confidence 01145578888999999999988888765 35678899877
Q ss_pred ccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcc
Q 006466 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK 300 (644)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~~ 300 (644)
|..+.||.||.|+|.++ +..++...++..+
T Consensus 227 ------G~~i~ad~VV~a~GIrP--n~ela~~aGlavn 256 (793)
T COG1251 227 ------GTEIPADLVVMAVGIRP--NDELAKEAGLAVN 256 (793)
T ss_pred ------CCcccceeEEEeccccc--ccHhHHhcCcCcC
Confidence 78899999999999998 5566767777753
No 224
>PRK07208 hypothetical protein; Provisional
Probab=98.64 E-value=3.7e-07 Score=101.69 Aligned_cols=43 Identities=42% Similarity=0.536 Sum_probs=39.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
++..||+|||||++||+||+.|+++ |++|+|+|+++.+||.+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~------g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR------GYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCceee
Confidence 3467999999999999999999999 999999999999998653
No 225
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.64 E-value=3e-07 Score=99.12 Aligned_cols=109 Identities=21% Similarity=0.258 Sum_probs=82.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~------g~~Vtlv~~~~~~l~~--------------~~-------------------- 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA------GKAVTLVDNAASLLAS--------------LM-------------------- 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCcccch--------------hC--------------------
Confidence 5799999999999999999998 9999999998754310 00
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+...+.+.+++.|+++++++.++++..+++ .+.|.+.+
T Consensus 182 -----------------------~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~-------------- 222 (377)
T PRK04965 182 -----------------------PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS--GIRATLDS-------------- 222 (377)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCC--EEEEEEcC--------------
Confidence 012345567777889999999999999976543 23466655
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
|.++.+|.||.|+|.++. ..+.+..++.
T Consensus 223 -g~~i~~D~vI~a~G~~p~--~~l~~~~gl~ 250 (377)
T PRK04965 223 -GRSIEVDAVIAAAGLRPN--TALARRAGLA 250 (377)
T ss_pred -CcEEECCEEEECcCCCcc--hHHHHHCCCC
Confidence 678999999999999874 3455566665
No 226
>PLN02487 zeta-carotene desaturase
Probab=98.62 E-value=1.8e-05 Score=89.12 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCEEecCceEEEEEEcC--CC--cEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 213 QLVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~--~g--~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.|.+.+.+.+++.|++|+++++|.+|+.+. ++ .+++|++.+ +++ +..+.+|.||.|.+.+.
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~~-------~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----ATE-------KEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CCC-------ceEEECCEEEECCCHHH
Confidence 467778888889999999999999999873 33 377888731 111 45789999999999763
No 227
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.62 E-value=9e-07 Score=96.59 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
.+.|.+.|.+.++..|.+|++++.|++|..++++.+++|++.+ |++++||.||....-.+
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence 3677888888888899999999999999988767888899876 67899999998665543
No 228
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.61 E-value=3.1e-06 Score=89.43 Aligned_cols=195 Identities=18% Similarity=0.173 Sum_probs=110.5
Q ss_pred cEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCC
Q 006466 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
...++...+...|.+.+.+.|++++.+++|+++..++ +.+.+|.+.+ | +++||.||+|+|.++
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~---------------g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPS---------------G-DVQADQVVLAAGAWA 193 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCC---------------C-EEECCEEEEcCChhh
Confidence 4567889999999999999999999999999998765 5577787765 4 799999999999886
Q ss_pred cchHHHHHHcCCCcccccCcccceeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCC
Q 006466 286 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 365 (644)
Q Consensus 286 ~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~h~~g~~~~~~~~g~~~l~~~~~~~~~ig~~~~~d~~ 365 (644)
. .+.+ ..+. ... .+.+ ....+... ..+...... ... ...|+.|..++.+.+|.....+..
T Consensus 194 ~---~l~~-~~~~----~~~-g~~~----~~~~~~~~-~~~~~~~~~--~~~----~~~y~~p~~~g~~~iG~~~~~~~~ 253 (337)
T TIGR02352 194 G---ELLP-LPLR----PVR-GQPL----RLEAPAVP-LLNRPLRAV--VYG----RRVYIVPRRDGRLVVGATMEESGF 253 (337)
T ss_pred h---hccc-CCcc----ccC-ceEE----Eeeccccc-cCCcccceE--EEc----CCEEEEEcCCCeEEEEEeccccCc
Confidence 3 2322 1111 111 1111 11111110 011111000 001 124677877888888854432211
Q ss_pred CCCCCcHHHHHHh-----hcCCcchhcccCCceeeecceeeecCCcccCCcccCCCeEEEcc-----CCcccCCCCCcch
Q 006466 366 NPFLNPYEEFQKF-----KHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC-----AAGFLNVPKIKGT 435 (644)
Q Consensus 366 ~~~~~~~~~~~~~-----~~~p~i~~~l~~~~~i~~~~~~i~~gg~~~~~~~~~~~v~LiGD-----AA~~~~P~~g~G~ 435 (644)
+...++ +..+.+ +..|.+. +.+.. -.+.++. ..+.++..+||. -......+.|.|+
T Consensus 254 ~~~~~~-~~~~~l~~~~~~~~P~l~----~~~~~------~~~~g~r---~~t~D~~piig~~~~~~~~~~~~g~~g~G~ 319 (337)
T TIGR02352 254 DTTPTL-GGIKELLRDAYTILPALK----EARLL------ETWAGLR---PGTPDNLPYIGEHPEDRRLLIATGHYRNGI 319 (337)
T ss_pred cCCCCH-HHHHHHHHHHHHhCCCcc----cCcHH------HheecCC---CCCCCCCCEeCccCCCCCEEEEcccccCce
Confidence 211222 222222 1123221 11111 1122332 334567777773 2344567788999
Q ss_pred HHHHHHHHHHHHHHhc
Q 006466 436 HTAMKSGMLAAEAGFG 451 (644)
Q Consensus 436 ~~A~~sa~~lA~~l~~ 451 (644)
..+...|.++|+.|..
T Consensus 320 ~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 320 LLAPATAEVIADLILG 335 (337)
T ss_pred ehhhHHHHHHHHHHhc
Confidence 9999999999998864
No 229
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.61 E-value=1.4e-07 Score=100.18 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchH
Q 006466 211 LSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (644)
Q Consensus 211 r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~ 289 (644)
...+.+.|.+++++ .+|+++.++.+.++..+++..+.||.+.+ ..++ -..+.|+.||+|+|+-+.+-+
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~----~~~~-------~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLN----RNGE-------LGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEec----CCCe-------EEEEecCeEEEecCCCccccc
Confidence 46788899999887 57999999999999988753566888765 1111 267999999999999886544
Q ss_pred HHHHHcCCCcccccCcccceeEEEEEEeecC
Q 006466 290 KLIKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (644)
. ++......|.|+-+.|....
T Consensus 201 ~----------TTNp~~~~GdGIamA~rAGa 221 (518)
T COG0029 201 Y----------TTNPKGSTGDGIAMAWRAGA 221 (518)
T ss_pred c----------cCCCccccccHHHHHHHcCC
Confidence 2 23444567777776665543
No 230
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=5.2e-08 Score=98.28 Aligned_cols=145 Identities=18% Similarity=0.305 Sum_probs=92.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHH------HHHhhhhhhcCCCee
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRAL------NELLPQWKQEEAPIR 178 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l------~~l~~~~~~~~~~~~ 178 (644)
..+||.+|||||..|+++|.+++.. |.+|.|+|..-.+|+.|+.-+|++.+.+ .+.+.+-...+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~------GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG---- 87 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH------GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYG---- 87 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc------CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcC----
Confidence 3479999999999999999999999 9999999998789999999999876543 11111111100
Q ss_pred eeccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 179 VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
+.......++++.....+..|+ .+|.......+.+.+|+++.|..- +.+++.| .|...|
T Consensus 88 --------~~~~~~~~fdW~~ik~krdayi---~RLngIY~~~L~k~~V~~i~G~a~----f~~~~~v-~V~~~d----- 146 (478)
T KOG0405|consen 88 --------FPINEEGSFDWKVIKQKRDAYI---LRLNGIYKRNLAKAAVKLIEGRAR----FVSPGEV-EVEVND----- 146 (478)
T ss_pred --------CccccccCCcHHHHHhhhhHHH---HHHHHHHHhhccccceeEEeeeEE----EcCCCce-EEEecC-----
Confidence 0011112222222222223333 344444555566678999988653 3334555 566655
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcch
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~ 288 (644)
|+ ...++|+.+++|+|.++..-
T Consensus 147 -~~-------~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 147 -GT-------KIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred -Ce-------eEEEecceEEEEeCCccCCC
Confidence 21 13489999999999988643
No 231
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.60 E-value=7.6e-07 Score=93.65 Aligned_cols=83 Identities=25% Similarity=0.419 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc-chH
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS-LSE 289 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~-l~~ 289 (644)
...+.+-+.+.++++|++|+++++|.+++..+ +.+.+|.+.+ |.+|.+|+||+|-|..+. +-.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw~~ 235 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDWFE 235 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccC---------------CcEEecCEEEEccCcchHHHHH
Confidence 46778889999999999999999999999887 4577888876 789999999999998774 345
Q ss_pred HHHHHcCCCcccccCcccceeEEE
Q 006466 290 KLIKNFKLREKSHAQHQTYALGIK 313 (644)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~g~~ 313 (644)
.|.+++|+.. .+..+.+|++
T Consensus 236 ~l~~K~Gv~~----~~~p~dIGVR 255 (486)
T COG2509 236 MLHKKLGVKM----RAKPFDIGVR 255 (486)
T ss_pred HHHHhcCccc----ccCCeeEEEE
Confidence 6677778774 3445666766
No 232
>PLN02676 polyamine oxidase
Probab=98.60 E-value=3.7e-06 Score=93.52 Aligned_cols=40 Identities=33% Similarity=0.590 Sum_probs=36.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-eEEEEcCCCCCCCcc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHI 152 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~ 152 (644)
.+||+|||||++||+||+.|++. |. +|+|+|++..+|+.+
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~------g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA------GIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc------CCCcEEEecCCCCCCCcc
Confidence 58999999999999999999999 98 699999999988754
No 233
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.58 E-value=1.2e-07 Score=112.39 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=71.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
...+|+|||||||||+||+.|++. |++|+|+|+.+.+|+....|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yG------------------------------ 348 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYG------------------------------ 348 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEcc------------------------------
Confidence 357999999999999999999999 99999999998888732111
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
+| .|... .++.+...+.+++.||++++++.+ |. .+++.+
T Consensus 349 -----------IP-------~~rlp-~~vi~~~i~~l~~~Gv~f~~n~~v--------G~--dit~~~------------ 387 (944)
T PRK12779 349 -----------IP-------EFRLP-NQLIDDVVEKIKLLGGRFVKNFVV--------GK--TATLED------------ 387 (944)
T ss_pred -----------CC-------CCcCh-HHHHHHHHHHHHhhcCeEEEeEEe--------cc--EEeHHH------------
Confidence 11 11111 344555667778899999988754 21 244433
Q ss_pred cccceEEEcCEEEEecCCC
Q 006466 266 FQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~ 284 (644)
.....+|.||+|+|++
T Consensus 388 ---l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 388 ---LKAAGFWKIFVGTGAG 403 (944)
T ss_pred ---hccccCCEEEEeCCCC
Confidence 2345689999999986
No 234
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.57 E-value=5.5e-07 Score=84.35 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=78.1
Q ss_pred EEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHH-HHhhhhhhcCCCeeeecc-C-CcE-
Q 006466 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN-ELLPQWKQEEAPIRVPVS-S-DKF- 186 (644)
Q Consensus 111 vIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~-~l~~~~~~~~~~~~~~~~-~-~~~- 186 (644)
+|||||++|++++..|.+.. ...+..+|+|+|+.+. |. |....+..-. .++.. .. ..+..... . ..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~-G~----G~~~~~~~~~~~llN~-~a--~~~s~~~~~~~~~f~ 71 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPF-GA----GGAYRPDQPPSHLLNT-PA--DQMSLFPDDPGDDFV 71 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCc-cc----cccCCCCCChHHhhcc-cc--cccccccccCCCCHH
Confidence 59999999999999999985 2334789999999654 52 2222111000 00000 00 00000000 0 111
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHh------cCCEEe-cCceEEEEEEcCCCcEEEEEeCcCccccC
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE------LGVEIY-PGFAASEILYDADNKVIGIGTNDMGIAKD 259 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~------~Gv~i~-~g~~v~~v~~~~~g~v~gV~~~d~g~~~~ 259 (644)
.|+.....-+ .......-.++|..+-++|.+...+ .|++|. ...+|+++...+++. .|.+.+
T Consensus 72 ~Wl~~~~~~~---~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~------ 140 (156)
T PF13454_consen 72 DWLRANGADE---AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY--RVVTAD------ 140 (156)
T ss_pred HHHHhcCccc---ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE--EEEECC------
Confidence 2222221100 0001113346676666666655433 354432 355899998887663 466665
Q ss_pred CCcccccccceEEEcCEEEEecCC
Q 006466 260 GSKKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
|..+.+|.||+|+|.
T Consensus 141 ---------g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 141 ---------GQSIRADAVVLATGH 155 (156)
T ss_pred ---------CCEEEeCEEEECCCC
Confidence 678999999999994
No 235
>PRK09897 hypothetical protein; Provisional
Probab=98.53 E-value=3.6e-07 Score=101.65 Aligned_cols=39 Identities=36% Similarity=0.605 Sum_probs=33.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
++|+||||||+|+++|.+|.+. ...++|+|+|++..+|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G~ 40 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAGV 40 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCCc
Confidence 4799999999999999999885 22579999999888774
No 236
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.53 E-value=1.1e-06 Score=95.82 Aligned_cols=113 Identities=25% Similarity=0.275 Sum_probs=86.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
.-.++|||||+.|+..|..++++ |.+|+|||+.+.+-.. +
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~L------G~~VTiie~~~~iLp~------------------~---------------- 212 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAAL------GSKVTVVERGDRILPG------------------E---------------- 212 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCCc------------------C----------------
Confidence 45699999999999999999999 9999999999865320 0
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
-.++.+.+.+.+++.|+++++++.++.+...+++ + .|.+.+ |.
T Consensus 213 ------------------------D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~------g~----- 255 (454)
T COG1249 213 ------------------------DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLED------GE----- 255 (454)
T ss_pred ------------------------CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEec------CC-----
Confidence 0345677888888888999999999999887755 3 566654 11
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
+.++++|.|+.|.|..+.+...-.+..|+.
T Consensus 256 --~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~ 285 (454)
T COG1249 256 --GGTIEADAVLVAIGRKPNTDGLGLENAGVE 285 (454)
T ss_pred --CCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence 127899999999999887554334444554
No 237
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.51 E-value=7e-07 Score=107.35 Aligned_cols=122 Identities=23% Similarity=0.281 Sum_probs=76.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
..+||+|||||||||+||+.|++. |++|+|+|+.+.+|+......
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~------G~~V~liD~~~~~GG~~~~~~----------------------------- 206 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA------GARVILVDEQPEAGGSLLSEA----------------------------- 206 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCCCeeeccc-----------------------------
Confidence 468999999999999999999999 999999999988876321000
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCc--cccCCCc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG--IAKDGSK 262 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g--~~~~G~~ 262 (644)
..++ ..+..++...+.+++.+. +++++.++.|..+.. ++.+..+...+.. ...++..
T Consensus 207 ---------~~~~---------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~--~~~v~~v~~~~~~~~~~~~~~~ 266 (985)
T TIGR01372 207 ---------ETID---------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYD--HNTVGALERVTDHLDAPPKGVP 266 (985)
T ss_pred ---------cccC---------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEec--CCeEEEEEEeeeccccccCCcc
Confidence 0000 011233444466666666 499999999988743 2333222211100 0001110
Q ss_pred ccccccceEEEcCEEEEecCCCC
Q 006466 263 KENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
-+.-.++++|.||+|+|+..
T Consensus 267 ---~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 267 ---RERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred ---ccceEEEEcCEEEEcCCCCC
Confidence 00113689999999999875
No 238
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.50 E-value=5.8e-06 Score=91.77 Aligned_cols=42 Identities=36% Similarity=0.564 Sum_probs=37.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
..++|+||||||||+++|..|++. |++|+|+|+.+.+|+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceee
Confidence 357999999999999999999999 999999999988876543
No 239
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.49 E-value=1.6e-06 Score=100.10 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=46.9
Q ss_pred HHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCc---cccCCCcccccccc--eEEEcCEEEEecCCCC
Q 006466 218 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKKENFQRG--VELRGRITLLAEGCRG 285 (644)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g---~~~~G~~~~~~~~g--~~i~a~~vV~A~G~~s 285 (644)
..+.+++.||++++++.++++..+++|.+.+|++..+. .+.+|.......+| .++.+|.||+|.|..+
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p 584 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNP 584 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCC
Confidence 44567788999999999999987666888888764321 23445432222223 4699999999999654
No 240
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.49 E-value=7.7e-07 Score=98.14 Aligned_cols=113 Identities=22% Similarity=0.369 Sum_probs=70.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (644)
+|||||||+||+++|..|+++ +++.+|+|||+.+..+... ++ + + ++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~~~~~-~~--~-----------------~----------~~ 47 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIVSFGA-CG--L-----------------P----------YF 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcceeec-CC--C-----------------c----------eE
Confidence 699999999999999999987 3356999999988653210 00 0 0 00
Q ss_pred eccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccccc
Q 006466 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (644)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~ 268 (644)
+. +..-....+.....+.+++.|++++.+++|+++..+++ . |.+.+. . .
T Consensus 48 ~~---------------~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~--v~~~~~---~---------~ 96 (444)
T PRK09564 48 VG---------------GFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK--T--ITVKNL---K---------T 96 (444)
T ss_pred ec---------------cccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC--E--EEEEEC---C---------C
Confidence 00 00000111222234455668999999999999976652 2 333220 0 1
Q ss_pred ceEEE--cCEEEEecCCCCc
Q 006466 269 GVELR--GRITLLAEGCRGS 286 (644)
Q Consensus 269 g~~i~--a~~vV~A~G~~s~ 286 (644)
|.++. +|++|+|+|+++.
T Consensus 97 ~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 97 GSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCEEEecCCEEEECCCCCCC
Confidence 23455 9999999998764
No 241
>PRK12831 putative oxidoreductase; Provisional
Probab=98.49 E-value=2.3e-07 Score=102.55 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=36.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (644)
...||+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM------GYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCCe
Confidence 467999999999999999999999 9999999998887763
No 242
>PLN03000 amine oxidase
Probab=98.48 E-value=3.2e-05 Score=89.57 Aligned_cols=41 Identities=39% Similarity=0.558 Sum_probs=38.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
..+|+|||||++||++|..|++. |++|+|+|+++.+|+.+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~------G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRF------GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHC------CCcEEEEEccCcCCCCcc
Confidence 57999999999999999999999 999999999999988653
No 243
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.48 E-value=7.3e-06 Score=90.40 Aligned_cols=42 Identities=36% Similarity=0.487 Sum_probs=37.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
..++|+|||||||||++|..|++. |++|+|+|+.+.+|+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~------G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA------GHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcEee
Confidence 357999999999999999999999 999999999988876543
No 244
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.46 E-value=5.5e-06 Score=90.72 Aligned_cols=98 Identities=28% Similarity=0.440 Sum_probs=71.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhc--------CCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeee
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREK--------NVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP 180 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~--------~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~ 180 (644)
.|+|||||++|+.+|..|+...... .++.+|+|+|+++.+... ++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------~~--------------------- 227 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------FD--------------------- 227 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------CC---------------------
Confidence 7999999999999999998632110 137899999998754220 00
Q ss_pred ccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 181 VSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
..+.+.+.+.+++.||+++.+++|+++..+ .|.+.+
T Consensus 228 -------------------------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~------- 263 (424)
T PTZ00318 228 -------------------------------QALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKD------- 263 (424)
T ss_pred -------------------------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECC-------
Confidence 123555677778899999999999988532 255555
Q ss_pred CcccccccceEEEcCEEEEecCCCC
Q 006466 261 SKKENFQRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s 285 (644)
|.++.+|.+|.|.|..+
T Consensus 264 --------g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 264 --------GEVIPTGLVVWSTGVGP 280 (424)
T ss_pred --------CCEEEccEEEEccCCCC
Confidence 67899999999999654
No 245
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.46 E-value=2.6e-05 Score=84.35 Aligned_cols=41 Identities=39% Similarity=0.604 Sum_probs=36.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
.|+|||||++||+||++|++. +|.++|+|+|+.+.+||-..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEE
Confidence 589999999999999999999 23399999999999988653
No 246
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.44 E-value=1e-06 Score=93.26 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=109.9
Q ss_pred hhhhhcccccccccccc-ccccCCCCCCCCCccccCCCCCccCCCCCCCccccccccccccccccccccccccccccccc
Q 006466 27 SIFRLNQTNNLQSQSSL-ANSIKTPSGYSPFRHFNQNPCFFSSGYFPNGVNLKGFGRNESGVSCAKLFFRSFCSEMCRES 105 (644)
Q Consensus 27 ~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (644)
.++-..+++.+.+.-.+ ++.+..++|+++.+...+....-....... ..+.+.......
T Consensus 152 ~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ire--------------------ieda~~l~~~~~ 211 (478)
T KOG1336|consen 152 KADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLRE--------------------IEDANRLVAAIQ 211 (478)
T ss_pred EeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeecc--------------------HHHHHHHHHHhc
Confidence 34445555555555544 778888888877655444332111110000 111111111112
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
..-.|++||+|..|+.+|..|.-. +++|++|++.+.+-. .++
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~------~~~VT~V~~e~~~~~--------------~lf------------------ 253 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSK------AKSVTVVFPEPWLLP--------------RLF------------------ 253 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhc------CceEEEEccCccchh--------------hhh------------------
Confidence 245699999999999999999988 999999998764321 000
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
-..+.+.+.+..+++||+++.++.+.++..+++|++..|.+.|
T Consensus 254 -------------------------~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d------------ 296 (478)
T KOG1336|consen 254 -------------------------GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD------------ 296 (478)
T ss_pred -------------------------hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc------------
Confidence 1233555677778899999999999999999999999999887
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.||+||...|+.+.
T Consensus 297 ---g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 297 ---GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred ---CCEeccCeEEEeeccccc
Confidence 789999999999998874
No 247
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.5e-07 Score=91.58 Aligned_cols=114 Identities=26% Similarity=0.450 Sum_probs=82.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
..|||+||||||||.+||+..+|. |++.-|+- .++|++. ++.-.++.+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARK------GiRTGl~a--erfGGQv-----ldT~~IENf------------------- 257 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARK------GIRTGLVA--ERFGGQV-----LDTMGIENF------------------- 257 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhh------cchhhhhh--hhhCCee-----ccccchhhe-------------------
Confidence 469999999999999999999999 99987763 3345432 221111111
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEc-CCCcEEEEEeCcCccccCCCccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKE 264 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~-~~g~v~gV~~~d~g~~~~G~~~~ 264 (644)
+..|. ....+|...|.+..++..|+++..-++++++.. ..+....|++.+
T Consensus 258 ---------Isv~~---------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n----------- 308 (520)
T COG3634 258 ---------ISVPE---------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN----------- 308 (520)
T ss_pred ---------ecccc---------ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC-----------
Confidence 01110 223678889999999999999988888888773 224456788776
Q ss_pred ccccceEEEcCEEEEecCCC
Q 006466 265 NFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~ 284 (644)
|..++++-||+|+|++
T Consensus 309 ----GavLkaktvIlstGAr 324 (520)
T COG3634 309 ----GAVLKARTVILATGAR 324 (520)
T ss_pred ----CceeccceEEEecCcc
Confidence 7889999999999976
No 248
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.41 E-value=3.7e-07 Score=72.52 Aligned_cols=35 Identities=40% Similarity=0.585 Sum_probs=32.1
Q ss_pred EECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 112 IVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 112 IVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
|||||++||++|+.|++. |.+|+|+|+.+.+|+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~------g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA------GYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHT------TSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHC------CCcEEEEecCcccCcce
Confidence 899999999999999999 99999999999998854
No 249
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.38 E-value=1.2e-06 Score=91.11 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEc-CCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHH
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~-~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~ 290 (644)
.....+|.......+++|+.++.|++|..+ +++++++|.+.+ .++.. .-..+.++.||+|.|+-. ..+
T Consensus 193 s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~----~~~~~-----~~~~~~ak~VIlaAGai~--Tp~ 261 (296)
T PF00732_consen 193 SAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD----NDGGV-----QRRIVAAKEVILAAGAIG--TPR 261 (296)
T ss_dssp HHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE----TTTSE-----EEEEEEEEEEEE-SHHHH--HHH
T ss_pred ehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeee----cCCcc-----eeeeccceeEEeccCCCC--Chh
Confidence 344555655554448999999999999875 456888999876 22320 015678999999999754 334
Q ss_pred HHHHcCC
Q 006466 291 LIKNFKL 297 (644)
Q Consensus 291 l~~~~~~ 297 (644)
|....|+
T Consensus 262 LLl~SGi 268 (296)
T PF00732_consen 262 LLLRSGI 268 (296)
T ss_dssp HHHHTTE
T ss_pred hhccccc
Confidence 4444554
No 250
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.38 E-value=1.7e-06 Score=92.63 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g 149 (644)
.||+|||||++|+++|+.|++. |++|+|+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~------Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR------GVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccC
Confidence 5899999999999999999999 99999999887654
No 251
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.38 E-value=1.2e-06 Score=95.57 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=61.3
Q ss_pred CCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEec
Q 006466 202 SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 281 (644)
Q Consensus 202 ~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~ 281 (644)
...+...++...++..|...|.+.|+.|+.++.|++|....++ +.+|.|.. ..|++..||.|+
T Consensus 177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~----------------G~iet~~~VNaa 239 (856)
T KOG2844|consen 177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPH----------------GSIETECVVNAA 239 (856)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccC----------------cceecceEEech
Confidence 3445667889999999999999999999999999999887654 55898875 358999999999
Q ss_pred CCCCcchHHHHHHcCCC
Q 006466 282 GCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 282 G~~s~l~~~l~~~~~~~ 298 (644)
|.|.. .+-...+..
T Consensus 240 GvWAr---~Vg~m~gvk 253 (856)
T KOG2844|consen 240 GVWAR---EVGAMAGVK 253 (856)
T ss_pred hHHHH---HhhhhcCCc
Confidence 99964 343334544
No 252
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.37 E-value=3e-07 Score=97.88 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
-.++.-.+.=.|.++|+.+..-.+|.++..+++++|.|+...|. -.|+ ..+|+|+.||.|+|..+-
T Consensus 223 DaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~-------e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 223 DARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGK-------EYEIRAKVVVNATGPFSD 288 (680)
T ss_pred hHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCc-------EEEEEEEEEEeCCCCccH
Confidence 34555556666778999999889999999999999989988873 3444 368999999999998874
No 253
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.36 E-value=2e-06 Score=93.33 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|||||||+||++||..|++. ++..+|+|+++.+...... -.+. + .++..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~~~y~r---~~l~-~---~~~~~------------------ 54 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERHLPYER---PPLS-K---SMLLE------------------ 54 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCCCCCCC---CCCC-H---HHHCC------------------
Confidence 5799999999999999999998 2234899999886543200 0000 0 00000
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
.. .. + ..... .+ ...+.|++++.++.|+.+..+. . .|.+.+
T Consensus 55 ----~~-~~-~-------~~~~~----~~----~~~~~~i~~~~g~~V~~id~~~--~--~v~~~~-------------- 95 (396)
T PRK09754 55 ----DS-PQ-L-------QQVLP----AN----WWQENNVHLHSGVTIKTLGRDT--R--ELVLTN-------------- 95 (396)
T ss_pred ----CC-cc-c-------cccCC----HH----HHHHCCCEEEcCCEEEEEECCC--C--EEEECC--------------
Confidence 00 00 0 00000 11 1235789999999998887654 2 255554
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.+|+|+|+++.
T Consensus 96 -g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 96 -GESWHWDQLFIATGAAAR 113 (396)
T ss_pred -CCEEEcCEEEEccCCCCC
Confidence 568999999999998863
No 254
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.36 E-value=7e-06 Score=88.08 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC-C
Q 006466 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR-G 285 (644)
Q Consensus 210 ~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~-s 285 (644)
...+|.+.|.+.++++|++++.+.+|.++..++ +.+.+|.+.+ +. ..+++||.||+|+|++ |
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~------g~-------~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRN------HR-------DIPLRADHFVLASGSFFS 323 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecC------Cc-------cceEECCEEEEccCCCcC
Confidence 346888889999999999999999999998776 5677777654 10 1479999999999999 6
No 255
>PRK06370 mercuric reductase; Validated
Probab=98.36 E-value=5.6e-06 Score=91.85 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~------~----------------------------- 210 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF------GSEVTVIERGPRLLPR------E----------------------------- 210 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCCCcc------c-----------------------------
Confidence 5899999999999999999999 9999999998754320 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||+++++++|+++..++++. .|.+.. ++
T Consensus 211 -----------------------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~--~v~~~~-----~~------- 253 (463)
T PRK06370 211 -----------------------DEDVAAAVREILEREGIDVRLNAECIRVERDGDGI--AVGLDC-----NG------- 253 (463)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE--EEEEEe-----CC-------
Confidence 01234556777788999999999999998765432 233221 00
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
.+.++.+|.||.|+|..+..
T Consensus 254 ~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 254 GAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred CceEEEeCEEEECcCCCcCC
Confidence 13579999999999988753
No 256
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.36 E-value=1.3e-06 Score=93.08 Aligned_cols=100 Identities=31% Similarity=0.485 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcC-------CCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeee
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKN-------VDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP 180 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~-------~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~ 180 (644)
.+|+|||||+.|..+|-.|+.....-. ..++|+|+|+++.+..+ +
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~------------------~---------- 207 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM------------------F---------- 207 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC------------------C----------
Confidence 579999999999999999987643211 14699999999865421 0
Q ss_pred ccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCC
Q 006466 181 VSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (644)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G 260 (644)
..++.+...+.++++||+++.++.|+++..+ +|++.+
T Consensus 208 ------------------------------~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~------- 244 (405)
T COG1252 208 ------------------------------PPKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD------- 244 (405)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc-------
Confidence 1234555667778899999999999998643 266654
Q ss_pred Ccccccccce-EEEcCEEEEecCCCCc
Q 006466 261 SKKENFQRGV-ELRGRITLLAEGCRGS 286 (644)
Q Consensus 261 ~~~~~~~~g~-~i~a~~vV~A~G~~s~ 286 (644)
|. +|.++.+|.|+|.+..
T Consensus 245 --------g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 245 --------GEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred --------CCeeEecCEEEEcCCCcCC
Confidence 34 5999999999998863
No 257
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.35 E-value=1.4e-06 Score=96.01 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (644)
..+|+||||||||+.||..|++. .+|++|+|+|+.+.+|+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcce
Confidence 46899999999999999999972 129999999999988763
No 258
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.34 E-value=2.6e-06 Score=91.80 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|||||||+||+.+|..|.+. .++.+|+||++.+...-. ...+ +. .+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~~~y~---~~~l-~~----~~~~------------------ 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSGDEYN---KPDL-SH----VFSQ------------------ 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCCCCcC---cCcC-cH----HHhC------------------
Confidence 5899999999999999999886 447899999987643210 0000 00 0000
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHH-HHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVR-WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~-~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
.....++.. ...+.+++.|++++.+++|+++..+. +. |.++
T Consensus 53 --------------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~-------------- 94 (377)
T PRK04965 53 --------------------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQ-------------- 94 (377)
T ss_pred --------------------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCC--CE--EEEC--------------
Confidence 001112221 12344566899999999999987654 22 4443
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
+.++.+|.+|+|+|+.+.
T Consensus 95 --~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 95 --GNQWQYDKLVLATGASAF 112 (377)
T ss_pred --CeEEeCCEEEECCCCCCC
Confidence 467999999999998763
No 259
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.34 E-value=7.4e-06 Score=91.23 Aligned_cols=37 Identities=41% Similarity=0.530 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
|||+|||+||+|+.+|..|++. |++|+|||++...++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~------g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA------GLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC------CCeEEEEeccCccCC
Confidence 6999999999999999999999 999999999998875
No 260
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.32 E-value=5.7e-06 Score=91.98 Aligned_cols=103 Identities=24% Similarity=0.313 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~------g~~Vtli~~~~~il~~------~----------------------------- 219 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF------GVEVTVVEAADRILPT------E----------------------------- 219 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCeEEEEEecCccCCc------C-----------------------------
Confidence 5899999999999999999998 9999999998754210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+.+.+.+.+++.||++++++.|+++..++++.+..+.+.+ |+
T Consensus 220 -----------------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~------ 264 (472)
T PRK05976 220 -----------------------DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE------ 264 (472)
T ss_pred -----------------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc------
Confidence 0233555667778889999999999999752223343344333 21
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
..++.+|.||+|+|..+.+
T Consensus 265 -~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 265 -EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred -eEEEEeCEEEEeeCCccCC
Confidence 1479999999999988754
No 261
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.31 E-value=1.1e-06 Score=103.02 Aligned_cols=39 Identities=38% Similarity=0.518 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
...+|+|||||||||+||..|++. |++|+|+|+.+.+|+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~------G~~V~v~e~~~~~GG 468 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR------GYDVTVFEALHEIGG 468 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCC
Confidence 357999999999999999999999 999999999877776
No 262
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.31 E-value=1.5e-06 Score=96.11 Aligned_cols=39 Identities=38% Similarity=0.624 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
...+|+||||||||+++|..|++. |++|+|+|+.+.+|+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~------g~~V~lie~~~~~gG 177 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK------GYDVTIFEARDKAGG 177 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCc
Confidence 357999999999999999999999 999999999987765
No 263
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.30 E-value=4.4e-06 Score=83.61 Aligned_cols=163 Identities=22% Similarity=0.356 Sum_probs=101.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc--------ccCccChHHHH--------H-Hhh
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII--------SGNVFEPRALN--------E-LLP 168 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~--------~g~~i~~~~l~--------~-l~~ 168 (644)
..||+||||||+.|++.|..|.-+ .|+++|.|+||...++-|.. +|....|..|. + ++.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lr----hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~ 122 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLR----HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYE 122 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhc----CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHH
Confidence 479999999999999999999876 57999999999988765532 12222333321 1 222
Q ss_pred hhhhcCCCe------eeeccCCcEE------------------EeccCCccccC------CCCCCCCcEEEcHHHHHHHH
Q 006466 169 QWKQEEAPI------RVPVSSDKFW------------------FLTKDRAFSLP------SPFSNRGNYVISLSQLVRWL 218 (644)
Q Consensus 169 ~~~~~~~~~------~~~~~~~~~~------------------~~~~~~~~~~~------~~~~~~~~~~v~r~~l~~~L 218 (644)
...+...|. .+.+..+.+- .+......++. ..+......+++-+.+...+
T Consensus 123 yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~ 202 (453)
T KOG2665|consen 123 YCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSF 202 (453)
T ss_pred HhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHH
Confidence 222222221 1222222221 11111111111 11223345678888999999
Q ss_pred HHHHHhcCCEEecCceEEEEEEcCCCcE--EEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 219 GGKAEELGVEIYPGFAASEILYDADNKV--IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 219 ~~~a~~~Gv~i~~g~~v~~v~~~~~g~v--~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
.+..+..|.+++++.++..+.++.++.. -.|..+ | .+++++.++||-|+|-.|.
T Consensus 203 ~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n-------g-------k~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 203 GEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN-------G-------KGEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHHHHhcccccccceeccchhccCCCCCCceEEec-------C-------ccceeEEeEEEEeccccHh
Confidence 9999999999999999999987765411 112222 1 1678999999999998875
No 264
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.30 E-value=2.5e-06 Score=80.62 Aligned_cols=153 Identities=24% Similarity=0.392 Sum_probs=87.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
+.||||||+|.+||+||+..++. .|.++|+|||.+-.+|+..+-|+.+-+.-+.+- |..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~----rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRK---------PAh-------- 134 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKN----RPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRK---------PAH-------- 134 (328)
T ss_pred ccceEEECCCccccceeeeeecc----CCCceEEEEEeeecCCCcccccchhhhhhhhcC---------hHH--------
Confidence 46999999999999999999876 579999999999888775544443221111000 000
Q ss_pred EEeccCCccccCCCCCCCCcEEE--cHHHHHHHHHHH-HHhcCCEEecCceEEEEEEcC--CC--cEEEEEeCcCccc-c
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGK-AEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIA-K 258 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v--~r~~l~~~L~~~-a~~~Gv~i~~g~~v~~v~~~~--~g--~v~gV~~~d~g~~-~ 258 (644)
.|++ ++..+....+.|++ +...|......+ +..-+|+++.-+.|.+++..+ +| +|.||.++-.=+. .
T Consensus 135 LFL~-----EigvpYedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qn 209 (328)
T KOG2960|consen 135 LFLQ-----EIGVPYEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQN 209 (328)
T ss_pred HHHH-----HhCCCcccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeec
Confidence 0000 01112223345554 334444444433 344569999888888887643 23 4566654410000 0
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
.|. ..-.+-..+++.+||-++|..+..
T Consensus 210 Hgt--QsCMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 210 HGT--QSCMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred cCc--cccCCCCeeeEEEEEEccCCCCCc
Confidence 111 111223578999999999977654
No 265
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.29 E-value=1e-06 Score=105.50 Aligned_cols=38 Identities=42% Similarity=0.531 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
..+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~------G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY------GVDVTVYEALHVVGG 467 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCcc
Confidence 57999999999999999999999 999999999988775
No 266
>PRK06116 glutathione reductase; Validated
Probab=98.28 E-value=7.7e-06 Score=90.39 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=77.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||+|+.|+.+|..|++. |.+|+++++++.+... +
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~------~----------------------------- 206 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL------GSETHLFVRGDAPLRG------F----------------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCccc------c-----------------------------
Confidence 5799999999999999999999 9999999987653210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||+++++++|+++..++++.+ .|.+.+
T Consensus 207 -----------------------~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~-------------- 248 (450)
T PRK06116 207 -----------------------DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED-------------- 248 (450)
T ss_pred -----------------------CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC--------------
Confidence 023355677778889999999999999987655533 466554
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||.|+|.++.
T Consensus 249 -g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 249 -GETLTVDCLIWAIGREPN 266 (450)
T ss_pred -CcEEEeCEEEEeeCCCcC
Confidence 567999999999997764
No 267
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=2.9e-06 Score=91.01 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=70.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEE
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (644)
+|||||||+||+.+|..|.++. .++.+|+|||+.+..--. . .++.+-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~~~~~---~----------~~~~~~~---------------- 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSSTTPYS---G----------MLPGMIA---------------- 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCCCccc---c----------hhhHHHh----------------
Confidence 4899999999999999997542 237999999988753210 0 0010000
Q ss_pred eccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccccc
Q 006466 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (644)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~ 268 (644)
-.+...++...+.+.+++.|++++.+ +|+++..+++ .|.+.+
T Consensus 49 ------------------g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~----~V~~~~--------------- 90 (364)
T TIGR03169 49 ------------------GHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPDRR----KVLLAN--------------- 90 (364)
T ss_pred ------------------eeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEecccC----EEEECC---------------
Confidence 00111223333456666789999876 6888876552 366655
Q ss_pred ceEEEcCEEEEecCCCCc
Q 006466 269 GVELRGRITLLAEGCRGS 286 (644)
Q Consensus 269 g~~i~a~~vV~A~G~~s~ 286 (644)
|.++++|++|+|+|+...
T Consensus 91 g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 91 RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred CCcccccEEEEccCCCCC
Confidence 567999999999998764
No 268
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.27 E-value=1.4e-05 Score=86.40 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=51.7
Q ss_pred EEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 207 ~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..++...+...|.+.+++ |+++++++.|++++.+++ . +.|++.+ |..++||.||+|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-G-WQLLDAN---------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-e-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence 456889999999999999 999999999999987653 3 4677765 556899999999999874
No 269
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.2e-06 Score=81.68 Aligned_cols=117 Identities=22% Similarity=0.273 Sum_probs=79.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
.-.|+|||+|||+-.||+.+++. .++.+|+|-.-. ++ +..|+.+..-.-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara------elkPllfEG~~~-~~-i~pGGQLtTTT~----------------------- 56 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA------ELKPLLFEGMMA-NG-IAPGGQLTTTTD----------------------- 56 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc------ccCceEEeeeec-cC-cCCCceeeeeec-----------------------
Confidence 44799999999999999999999 999999996431 21 111221111000
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
--++|..- --+...+|.+.+++++++.|.+|+..+ |.++..... -..|.++
T Consensus 57 -------veNfPGFP-----dgi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ssk--pF~l~td-------------- 107 (322)
T KOG0404|consen 57 -------VENFPGFP-----DGITGPELMDKMRKQSERFGTEIITET-VSKVDLSSK--PFKLWTD-------------- 107 (322)
T ss_pred -------cccCCCCC-----cccccHHHHHHHHHHHHhhcceeeeee-hhhccccCC--CeEEEec--------------
Confidence 00122110 024567889999999999999999775 777776653 2335443
Q ss_pred ccceEEEcCEEEEecCCCC
Q 006466 267 QRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s 285 (644)
...+.+|.||+|+|+..
T Consensus 108 --~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 108 --ARPVTADAVILATGASA 124 (322)
T ss_pred --CCceeeeeEEEecccce
Confidence 36799999999999764
No 270
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.27 E-value=4.2e-06 Score=92.08 Aligned_cols=37 Identities=22% Similarity=0.523 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g 149 (644)
+|||||||+||+.+|..|++. .++.+|+|||+.+.++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcc
Confidence 699999999999999999886 4578999999997654
No 271
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=2.8e-06 Score=89.26 Aligned_cols=144 Identities=20% Similarity=0.291 Sum_probs=80.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC-CCCccc--ccCccCh-------HHHHHHhhhhhhcCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHII--SGNVFEP-------RALNELLPQWKQEEA 175 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~~~--~g~~i~~-------~~l~~l~~~~~~~~~ 175 (644)
..|||||||||-||..||.+++|. |.+.+++-.+-. +|.... +-+.+.. .+|+.+........
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~------Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s- 99 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARL------GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQS- 99 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhc------CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhh-
Confidence 369999999999999999999999 999999987643 333211 1122221 22222211111100
Q ss_pred CeeeeccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCC----cEEEEE
Q 006466 176 PIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADN----KVIGIG 250 (644)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g----~v~gV~ 250 (644)
.-.+..+....+ |... .....++|..+.+.|.+.... .+.+|+.+ .|+++...+.+ ++.||.
T Consensus 100 -------~vq~k~LNrs~G---PAVw--g~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~ 166 (679)
T KOG2311|consen 100 -------GVQYKVLNRSKG---PAVW--GLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVV 166 (679)
T ss_pred -------hhhHHHhhccCC---Cccc--ChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEE
Confidence 000011110000 0000 001234455555555544433 24677766 47777654433 378899
Q ss_pred eCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 251 ~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
+.| |+.+.|+.||+.||.+
T Consensus 167 l~d---------------gt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 167 LVD---------------GTVVYAESVILTTGTF 185 (679)
T ss_pred Eec---------------CcEeccceEEEeeccc
Confidence 887 8899999999999976
No 272
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.25 E-value=8.7e-06 Score=90.26 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=77.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
...|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~d--------------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL------GVKVTLINTRDRLLSF------LD--------------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------CC---------------------------
Confidence 35799999999999999999999 9999999998754320 00
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
.++...|.+.+++.|+++++++.++++..++++ + .+.+.+
T Consensus 216 -------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~------------- 255 (461)
T PRK05249 216 -------------------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKS------------- 255 (461)
T ss_pred -------------------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECC-------------
Confidence 233556777778889999999999999865533 3 355443
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||.|+|.++.
T Consensus 256 --g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 256 --GKKIKADCLLYANGRTGN 273 (461)
T ss_pred --CCEEEeCEEEEeecCCcc
Confidence 567999999999998875
No 273
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.24 E-value=2.5e-06 Score=89.20 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcc
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
-+.+...+.+-+++.|.+|++...|++|..|. |.++||.+.| |.+++++.||--++.+-..
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 37788899999999999999999999999988 8999999988 8899999999888877654
No 274
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.23 E-value=1.4e-05 Score=88.24 Aligned_cols=99 Identities=22% Similarity=0.152 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-.|+|||||..|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~il~~------~----------------------------- 205 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL------GSETHLVIRHERVLRS------F----------------------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCcc------c-----------------------------
Confidence 4799999999999999999999 9999999998754320 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||++++++.++++..++++.+ .|.+.+
T Consensus 206 -----------------------d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~-------------- 247 (450)
T TIGR01421 206 -----------------------DSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFED-------------- 247 (450)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECC--------------
Confidence 022355577777889999999999999986544423 455543
Q ss_pred cc-eEEEcCEEEEecCCCCc
Q 006466 268 RG-VELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g-~~i~a~~vV~A~G~~s~ 286 (644)
| ..+.+|.||.|.|..+.
T Consensus 248 -g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 248 -GKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred -CcEEEEcCEEEEeeCCCcC
Confidence 4 56999999999997764
No 275
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.22 E-value=2.7e-06 Score=94.21 Aligned_cols=39 Identities=36% Similarity=0.618 Sum_probs=36.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
...+|+||||||+|+++|..|++. |++|+|+|+.+.+|+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 457999999999999999999999 999999999988776
No 276
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.22 E-value=0.00013 Score=82.02 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=60.5
Q ss_pred EEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc
Q 006466 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 207 ~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..++...+...|.+.|.++|++|+++++|+++..++ +.+++|++.+. .+|+ ..+|+|+.||.|+|.++
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa- 190 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWA- 190 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcch-
Confidence 467899999999999999999999999999998765 56777776431 1121 25799999999999996
Q ss_pred chHHHHHHcCCC
Q 006466 287 LSEKLIKNFKLR 298 (644)
Q Consensus 287 l~~~l~~~~~~~ 298 (644)
..+.+..++.
T Consensus 191 --~~l~~~~g~~ 200 (516)
T TIGR03377 191 --GRIAEYAGLD 200 (516)
T ss_pred --HHHHHhcCCC
Confidence 4565555654
No 277
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1e-05 Score=89.67 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... +
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL------GAEVTIVEALPRILPG------E----------------------------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCcCCc------C-----------------------------
Confidence 4799999999999999999998 9999999998754210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+.+.+.+.+++.||+++++++|+++..+++ .+ .|.+.+ +|+
T Consensus 212 -----------------------~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~~~~-----gg~------ 255 (462)
T PRK06416 212 -----------------------DKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GV-TVTLED-----GGK------ 255 (462)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEEEEe-----CCe------
Confidence 023345567777889999999999999987653 33 354433 011
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
..++.+|.||.|+|.++.
T Consensus 256 -~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 256 -EETLEADYVLVAVGRRPN 273 (462)
T ss_pred -eEEEEeCEEEEeeCCccC
Confidence 157999999999998875
No 278
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.21 E-value=1.3e-05 Score=88.32 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||||++|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL------GSKVTVLDAASTILPR------E----------------------------- 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCccCCC------C-----------------------------
Confidence 4799999999999999999998 9999999998754220 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+.+.+.+.+++.|++++++++|+++..++ +.+ .+.. +
T Consensus 197 -----------------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v-~v~~-~-------------- 236 (438)
T PRK07251 197 -----------------------EPSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQV-LVVT-E-------------- 236 (438)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEE-EEEE-C--------------
Confidence 01234456667788899999999999997654 333 2332 2
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||+|+|..+.
T Consensus 237 -g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 237 -DETYRFDALLYATGRKPN 254 (438)
T ss_pred -CeEEEcCEEEEeeCCCCC
Confidence 467999999999998875
No 279
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.20 E-value=1.4e-05 Score=88.54 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=75.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||+|++|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL------GSEVTILQRSDRLLPR------E----------------------------- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCcCCCc------c-----------------------------
Confidence 5799999999999999999999 9999999998654210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+...+.+.+++.||+++++++|+++..++++ ..|.+.+ +|.
T Consensus 206 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~-----~~~------ 249 (463)
T TIGR02053 206 -----------------------EPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEK-----PGG------ 249 (463)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEe-----CCC------
Confidence 0123455667777889999999999999765432 2344321 011
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
+.++.+|.||+|+|..+.
T Consensus 250 -~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 250 -QGEVEADELLVATGRRPN 267 (463)
T ss_pred -ceEEEeCEEEEeECCCcC
Confidence 357999999999998775
No 280
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.19 E-value=4.1e-06 Score=89.46 Aligned_cols=38 Identities=47% Similarity=0.579 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
..+|+|||||++|+++|..|++. |.+|+|+|+.+.+++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~~gg 55 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL------GYEVHVYDKLPEPGG 55 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCcEEEEeCCCCCCc
Confidence 46899999999999999999998 999999999988765
No 281
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.19 E-value=1.9e-05 Score=87.05 Aligned_cols=108 Identities=22% Similarity=0.348 Sum_probs=79.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||++|+.+|..|++. |.+|+++++.+.+.... +
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~~-----~----------------------------- 189 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL------GKNVRIIQLEDRILPDS-----F----------------------------- 189 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCcEEEEeCCcccCchh-----c-----------------------------
Confidence 5799999999999999999998 99999999876432100 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+.+.+.+.+++.|++++++++++++..+ +.+..+.+++
T Consensus 190 -----------------------~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~~-------------- 230 (444)
T PRK09564 190 -----------------------DKEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTDK-------------- 230 (444)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeCC--------------
Confidence 0234566778888899999999999998543 4455565543
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
.++.+|.||.|+|.++. ..+++..++.
T Consensus 231 --~~i~~d~vi~a~G~~p~--~~~l~~~gl~ 257 (444)
T PRK09564 231 --GEYEADVVIVATGVKPN--TEFLEDTGLK 257 (444)
T ss_pred --CEEEcCEEEECcCCCcC--HHHHHhcCcc
Confidence 46999999999998764 2334444443
No 282
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.19 E-value=6.1e-07 Score=84.04 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=45.4
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCC---C---ceeEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---N---QLKLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~---~---~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
+.+.|+.|. -|.++||+++++++..+. | ....+||+..||.|| -|.-.||+++|.
T Consensus 53 ~~~~CIgC~------lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg---~C~e~CPt~Al~ 113 (172)
T COG1143 53 DRDKCIGCG------LCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCG---LCVEVCPTGALV 113 (172)
T ss_pred cccCCcchh------HHHhhCCcCceEEEEcccCCCCccccccceeccccccccC---chhhhCchhhhc
Confidence 445599998 799999999998865432 2 236799999999999 999999999884
No 283
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.18 E-value=9.5e-06 Score=87.45 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=33.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
||+|||||+||+.+|+.|++. |++|+|+|+++.++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~------G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA------GVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCcEEEEeccccccC
Confidence 799999999999999999999 999999999877544
No 284
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.16 E-value=2.2e-05 Score=86.21 Aligned_cols=107 Identities=17% Similarity=0.264 Sum_probs=78.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||++|+.+|..|++. |.+|+++++.+.+....
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~~~~~----------------------------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER------GKNVTLIHRSERILNKL----------------------------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccCccc-----------------------------------
Confidence 4799999999999999999998 99999999887542100
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
. ...+.+.+.+.+++.||++++++.++++..+ +.+ +.+.+
T Consensus 177 ---------------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~-------------- 216 (427)
T TIGR03385 177 ---------------------F-DEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTS-------------- 216 (427)
T ss_pred ---------------------c-CHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcC--------------
Confidence 0 0233555677778899999999999998653 333 34443
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
|.++.+|.||.|+|.++. ..+.+..++.
T Consensus 217 -g~~i~~D~vi~a~G~~p~--~~~l~~~gl~ 244 (427)
T TIGR03385 217 -GGVYQADMVILATGIKPN--SELAKDSGLK 244 (427)
T ss_pred -CCEEEeCEEEECCCccCC--HHHHHhcCcc
Confidence 567999999999998874 2344444443
No 285
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2.1e-05 Score=87.29 Aligned_cols=103 Identities=27% Similarity=0.332 Sum_probs=76.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~------G~~Vtlv~~~~~~l~~------------------~----------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY------GVDVTIVEFLDRALPN------------------E----------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------------------c-----------------
Confidence 4799999999999999999999 9999999987654220 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||+++++++|+++..++ +.+ .|.+.. .+|+
T Consensus 212 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~----~~g~------ 256 (466)
T PRK07818 212 -----------------------DAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKV-TVTVSK----KDGK------ 256 (466)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeE-EEEEEe----cCCC------
Confidence 02235567777788999999999999997654 323 344321 1222
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
..++.+|.||.|.|.++.+
T Consensus 257 -~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 257 -AQELEADKVLQAIGFAPRV 275 (466)
T ss_pred -eEEEEeCEEEECcCcccCC
Confidence 1479999999999988753
No 286
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2.4e-05 Score=86.75 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=76.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
.-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~------G~~Vtlie~~~~il~~------~d--------------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL------GAQVTVVEYLDRICPG------TD--------------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCCCCCC------CC---------------------------
Confidence 35799999999999999999999 9999999997754210 00
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
..+.+.+.+.+++.||+++++++|+++..++++ + .+.+.+ ..+|+
T Consensus 215 -------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v-~v~~~~---~~~g~----- 259 (466)
T PRK06115 215 -------------------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADG-V-SLTLEP---AAGGA----- 259 (466)
T ss_pred -------------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-E-EEEEEE---cCCCc-----
Confidence 123455777778889999999999999765544 2 233221 01121
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
+.++.+|.||.|.|..+.
T Consensus 260 --~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 260 --AETLQADYVLVAIGRRPY 277 (466)
T ss_pred --eeEEEeCEEEEccCCccc
Confidence 357999999999998865
No 287
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.15 E-value=5.9e-06 Score=97.14 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=70.8
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEEe
Q 006466 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (644)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (644)
|||||||+||+.+|..|.+.. ..+.+|+|||+.+.++.... . +..++..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~y~r~---~-----L~~~l~g-------------------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPNYNRI---L-----LSSVLQG-------------------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCCcccc---c-----ccHHHCC--------------------
Confidence 689999999999999998862 12689999999887642100 0 0000000
Q ss_pred ccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccc
Q 006466 190 TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG 269 (644)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g 269 (644)
. ....++.....+..++.|++++.+++|+.+..+. + .|.+.+ |
T Consensus 50 --~----------------~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~--k--~V~~~~---------------g 92 (785)
T TIGR02374 50 --E----------------ADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ--K--QVITDA---------------G 92 (785)
T ss_pred --C----------------CCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC--C--EEEECC---------------C
Confidence 0 0001111112333456899999999999987654 2 255554 6
Q ss_pred eEEEcCEEEEecCCCCc
Q 006466 270 VELRGRITLLAEGCRGS 286 (644)
Q Consensus 270 ~~i~a~~vV~A~G~~s~ 286 (644)
.++.+|.+|+|+|+++.
T Consensus 93 ~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 93 RTLSYDKLILATGSYPF 109 (785)
T ss_pred cEeeCCEEEECCCCCcC
Confidence 68999999999998764
No 288
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.14 E-value=9.4e-07 Score=81.58 Aligned_cols=54 Identities=20% Similarity=0.459 Sum_probs=45.9
Q ss_pred CCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeC
Q 006466 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
+-.|-.|+ +.||.++||++++..+++ .+++|+|.|+.|| +|.++||++.|.-+.
T Consensus 50 pv~C~qCe----daPC~~vCP~~AI~~~~~-----~v~V~~ekCiGC~---~C~~aCPfGai~~~~ 103 (165)
T COG1142 50 PVVCHHCE----DAPCAEVCPVGAITRDDG-----AVQVDEEKCIGCK---LCVVACPFGAITMVS 103 (165)
T ss_pred CCcCCCCC----CcchhhhCchhheeecCC-----ceEEchhhccCcc---hhhhcCCcceEEEEe
Confidence 34566666 899999999999997744 7999999999999 999999999996543
No 289
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.13 E-value=2.2e-05 Score=86.70 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||+|+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~------~----------------------------- 205 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL------GVQVTLIYRGELILRG------F----------------------------- 205 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEEeCCCCCcc------c-----------------------------
Confidence 4799999999999999999998 9999999987653210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-.++.+.+.+.+++.||++++++.|+++..++++ + .|.+.+
T Consensus 206 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~-------------- 246 (446)
T TIGR01424 206 -----------------------DDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSH-------------- 246 (446)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcC--------------
Confidence 0223445667778889999999999999765544 2 355543
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||.|+|..+.
T Consensus 247 -g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 247 -GEEIVADVVLFATGRSPN 264 (446)
T ss_pred -CcEeecCEEEEeeCCCcC
Confidence 567999999999997654
No 290
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.13 E-value=5.1e-07 Score=76.77 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=43.7
Q ss_pred CCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCCCC
Q 006466 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPEG 635 (644)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~g 635 (644)
+..|..|. +.||..+||++++...++ +| .+.||.+.|+.|+ .|...||+++|.|..-.|
T Consensus 6 ~~~C~hC~----~ppC~~~CP~~Ai~~~~~-~G--~V~id~~~CigC~---~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCE----DPPCVEACPTGAIYKDPE-DG--IVVIDEDKCIGCG---YCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BS----S-HHHHHCTTTSEEEETT-TS---EEE-TTTCCTHH---HHHHH-TTS-EEEETTTT
T ss_pred CCcCcCcC----CCchhhhCCccceEEEcC-CC--eEEechhhccCch---hhhhhhccCcceeecccc
Confidence 56788888 889999999999987652 22 7899999999999 999999999999987654
No 291
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.13 E-value=2.8e-05 Score=86.05 Aligned_cols=100 Identities=23% Similarity=0.255 Sum_probs=74.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~ll~~------~----------------------------- 209 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL------GTKVTIVEMAPQLLPG------E----------------------------- 209 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCcc------c-----------------------------
Confidence 4799999999999999999998 9999999998754210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
..++.+.+.+.+++.||+++++++++++..++ +.+ .+... |+
T Consensus 210 -----------------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~v-~~~~~-------g~------ 251 (458)
T PRK06912 210 -----------------------DEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQA-LFEYE-------GS------ 251 (458)
T ss_pred -----------------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CEE-EEEEC-------Cc------
Confidence 02335567777788999999999999987554 222 23221 11
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
..++.+|.||+|+|..+.+
T Consensus 252 -~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 252 -IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -eEEEEeCEEEEecCCccCC
Confidence 2469999999999987753
No 292
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=3.9e-06 Score=95.15 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHH
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~ 290 (644)
...+...|.+.+++.||+|+.++.+++++.+++|+|+||...+ .++|+. ..|.|+.||+|||+.+.+-.
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~~~- 193 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRIYA- 193 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCcccccC-
Confidence 4678899999999899999999999999987668999998643 123432 57899999999999986421
Q ss_pred HHHHcCCCcccccCcccceeEEEEEEeecC
Q 006466 291 LIKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (644)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (644)
. ....+...|.|+.+.+....
T Consensus 194 ------~---~~~~~~~tGDG~~mA~~aGA 214 (570)
T PRK05675 194 ------S---TTNALINTGDGVGMALRAGV 214 (570)
T ss_pred ------C---CCCCCCcCcHHHHHHHHcCC
Confidence 1 12344566766665555444
No 293
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.12 E-value=2e-05 Score=85.50 Aligned_cols=102 Identities=26% Similarity=0.427 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|+|||+|++|+.+|..|+++ |++|+++|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~------G~~v~l~e~~~~~~~~~~--------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR------GKKVTLIEAADRLGGQLL--------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEcccccchhhh---------------------------------
Confidence 36899999999999999999999 999999999998765210
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEE-EEeCcCccccCCCcccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG-IGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~g-V~~~d~g~~~~G~~~~~ 265 (644)
. ..+.+.+.+..++.||++++++.+.+++...+..... +...+
T Consensus 177 -----------------------~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~------------ 220 (415)
T COG0446 177 -----------------------D-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID------------ 220 (415)
T ss_pred -----------------------h-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC------------
Confidence 0 3446678888899999999999999998766332211 23333
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
+..+.+|.++.+.|.++.
T Consensus 221 ---~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 221 ---GEEIKADLVIIGPGERPN 238 (415)
T ss_pred ---CcEEEeeEEEEeeccccc
Confidence 578999999999999884
No 294
>PLN02507 glutathione reductase
Probab=98.12 E-value=2.4e-05 Score=87.43 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=76.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||+.|+.+|..|++. |.+|+|+++.+.+... +
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~~l~~------~----------------------------- 242 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM------GATVDLFFRKELPLRG------F----------------------------- 242 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEEecCCcCcc------c-----------------------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||++++++.|+++..++++ + .|.+.+
T Consensus 243 -----------------------d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~-------------- 283 (499)
T PLN02507 243 -----------------------DDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDH-------------- 283 (499)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECC--------------
Confidence 0233555677778889999999999999765433 3 355443
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
|.++.+|.||.|.|..+..
T Consensus 284 -g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 284 -GEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -CcEEEcCEEEEeecCCCCC
Confidence 5679999999999988753
No 295
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.12 E-value=1.9e-05 Score=79.74 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
-++.+.|..+.++.|+-++.|-+|.+..... ++|..|.+.+.+ ...++||..|+|+|..
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~-------------diP~~a~~~VLAsGsf 316 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHA-------------DIPLRADFYVLASGSF 316 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccc-------------cCCCChhHeeeecccc
Confidence 5677888889999999999999999998877 778888887521 2568999999999954
No 296
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.12 E-value=1.4e-05 Score=94.06 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|||||+|+||+.+|..|.+... .++.+|+||++.+.+.... + .+...+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~Y~r----~----~L~~~~~~------------------ 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIAYDR----V----HLSSYFSH------------------ 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCcccC----C----cchHhHcC------------------
Confidence 479999999999999999987521 1268999999988754210 0 00000000
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
. ...++.....+..++.|++++.+++|+++..+. ++ |.+.+
T Consensus 56 ----~-----------------~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~--V~~~~-------------- 96 (847)
T PRK14989 56 ----H-----------------TAEELSLVREGFYEKHGIKVLVGERAITINRQE--KV--IHSSA-------------- 96 (847)
T ss_pred ----C-----------------CHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cE--EEECC--------------
Confidence 0 001111112233456799999999998886543 23 55554
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.+|+|+|+++.
T Consensus 97 -G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 97 -GRTVFYDKLIMATGSYPW 114 (847)
T ss_pred -CcEEECCEEEECCCCCcC
Confidence 568999999999998764
No 297
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.11 E-value=1.1e-05 Score=88.33 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=70.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|||||||.||+.+|..|.+. +.+|+|||+.+..--. -+++.+..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~------~~~ItlI~~~~~~~~~-------------~~l~~~~~-------------- 56 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK------KYNITVISPRNHMLFT-------------PLLPQTTT-------------- 56 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC------CCeEEEEcCCCCcchh-------------hhHHHhcc--------------
Confidence 46899999999999999988765 7999999988753210 00111000
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
-......+..-+.+.++..|++++.+ +|++|..++ ..| .+.+.+ .+.. .-
T Consensus 57 --------------------g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id~~~-~~v-~~~~~~----~~~~---~~ 106 (424)
T PTZ00318 57 --------------------GTLEFRSICEPVRPALAKLPNRYLRA-VVYDVDFEE-KRV-KCGVVS----KSNN---AN 106 (424)
T ss_pred --------------------cCCChHHhHHHHHHHhccCCeEEEEE-EEEEEEcCC-CEE-EEeccc----cccc---cc
Confidence 00111223333556666678888765 798987665 222 232211 0000 00
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
++|.++.+|++|+|+|+...
T Consensus 107 ~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 107 VNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred CCceEecCCEEEECCCcccC
Confidence 12568999999999998753
No 298
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.10 E-value=2.4e-05 Score=86.07 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~~------~----------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER------GLHPTLIHRSDKINKL------M----------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecccccchh------c-----------------------------
Confidence 4799999999999999999998 9999999998754320 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
..++.+.+.+.+++.||+++++++++++.. . .|.+.+
T Consensus 188 -----------------------d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~-------------- 224 (438)
T PRK13512 188 -----------------------DADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKS-------------- 224 (438)
T ss_pred -----------------------CHHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECC--------------
Confidence 023345567777889999999999999852 1 255544
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||.|+|.++.
T Consensus 225 -g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 225 -GKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred -CCEEEeCEEEECcCCCcC
Confidence 567899999999999875
No 299
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.09 E-value=3.3e-05 Score=85.66 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||+|..|+.+|..|++. |.+|+++|+.+.+... +
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL------GVKVTLVSSRDRVLPG------E----------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCcCCCC------C-----------------------------
Confidence 4799999999999999999998 9999999987754321 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+...+.+.+++.||+++++++++++..++++ + .|.+.+
T Consensus 217 -----------------------d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~-------------- 257 (466)
T PRK07845 217 -----------------------DADAAEVLEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTD-------------- 257 (466)
T ss_pred -----------------------CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECC--------------
Confidence 0123455677778899999999999999765533 3 355544
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
|.++.+|.||.|.|..+..
T Consensus 258 -g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 258 -GRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -CcEEEecEEEEeecCCcCC
Confidence 5679999999999988764
No 300
>PTZ00058 glutathione reductase; Provisional
Probab=98.09 E-value=3.3e-05 Score=87.04 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=75.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
.-+|+|||||..|+.+|..|++. |.+|+|+|+++.+... ++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~------G~~Vtli~~~~~il~~------~d--------------------------- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRL------GAESYIFARGNRLLRK------FD--------------------------- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCcEEEEEeccccccc------CC---------------------------
Confidence 35799999999999999999999 9999999998754210 00
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
..+.+.+.+.+++.||++++++.+.++..++++.+. +...+
T Consensus 278 -------------------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~------------- 318 (561)
T PTZ00058 278 -------------------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD------------- 318 (561)
T ss_pred -------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------
Confidence 223455667778889999999999999865433332 33322
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
.+.++.+|.||.|+|.++.
T Consensus 319 -~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 319 -GRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred -CCEEEECCEEEECcCCCCC
Confidence 1357999999999997765
No 301
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.08 E-value=8.3e-05 Score=80.76 Aligned_cols=62 Identities=24% Similarity=0.222 Sum_probs=44.5
Q ss_pred cEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 206 ~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
.+.+..+.+...+...+...|.+|+++++|++|..++ +.| .|.+.+ |.++.||.||.|....
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~~~---------------g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 203 GLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERED-GGV-TVTTED---------------GETIEADAVISAVPPS 264 (450)
T ss_dssp TEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEETT---------------SSEEEESEEEE-S-HH
T ss_pred ceeecccchhHHHHHHHhhcCceeecCCcceeccccc-ccc-cccccc---------------ceEEecceeeecCchh
Confidence 3344445556666666666778999999999999988 445 466665 5689999999999844
No 302
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.07 E-value=6.1e-05 Score=76.08 Aligned_cols=175 Identities=21% Similarity=0.313 Sum_probs=91.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC--CCCccc-c-cCcc--Ch---------HHHHHHhhhh
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAHII-S-GNVF--EP---------RALNELLPQW 170 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~--~g~~~~-~-g~~i--~~---------~~l~~l~~~~ 170 (644)
.++||||||+|.|||.||..|+.. |.+|+|+|+..+ +|++.. | |+.+ ++ ..++-..++|
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a------G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW 77 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA------GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDW 77 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc------CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhh
Confidence 468999999999999999999999 999999998764 444331 1 2221 21 1122223444
Q ss_pred hhc---CCCeee----------e-ccCCcEEEeccCCccccCCC---------CCCC----CcEEEc-------HHHHHH
Q 006466 171 KQE---EAPIRV----------P-VSSDKFWFLTKDRAFSLPSP---------FSNR----GNYVIS-------LSQLVR 216 (644)
Q Consensus 171 ~~~---~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~v~-------r~~l~~ 216 (644)
... +.|... . ...+.-.|+....-.-||.. ...+ ..|.|. ..-|.+
T Consensus 78 ~gtA~FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr 157 (552)
T COG3573 78 FGTAAFDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVR 157 (552)
T ss_pred hcccccCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHH
Confidence 322 111110 0 00111111111110011100 0001 122221 244555
Q ss_pred HHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCcc--ccCCCccccccc-ceEEEcCEEEEecCCCCcc
Q 006466 217 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI--AKDGSKKENFQR-GVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~--~~~G~~~~~~~~-g~~i~a~~vV~A~G~~s~l 287 (644)
.+.+...+.-+++.+.++|..+...+ |+|+||.-.-..- -.-|++...--. ..+++|..||+++|.-+-.
T Consensus 158 ~~re~~~~~~v~f~~RHrV~~l~~t~-grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGGn 230 (552)
T COG3573 158 RLREAQRRGRVTFRFRHRVDGLTTTG-GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGGN 230 (552)
T ss_pred HHHHHHhCCceEEEeeeeccceEeeC-CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcCCC
Confidence 56655544449999999999998876 7888875321110 011221111111 1468899999999987663
No 303
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.07 E-value=3.5e-05 Score=85.69 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=76.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-.|+|||||+.|+.+|..++.... .|.+|+|+|+.+.+... +
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~---~G~~Vtli~~~~~il~~------~----------------------------- 229 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKP---RGGKVTLCYRNNMILRG------F----------------------------- 229 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhcc---CCCeEEEEecCCccccc------c-----------------------------
Confidence 579999999999999976654211 18999999998764320 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-.++.+.+.+.+++.|+++++++.++++..++++. ..|.+.+
T Consensus 230 -----------------------d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~-------------- 271 (486)
T TIGR01423 230 -----------------------DSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFES-------------- 271 (486)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcC--------------
Confidence 02345667777888999999999999998665442 3455544
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
|.++.+|.||.|+|.++..
T Consensus 272 -g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 272 -GKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred -CCEEEcCEEEEeeCCCcCc
Confidence 5679999999999988753
No 304
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=3e-05 Score=82.96 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=86.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE-
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF- 186 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~- 186 (644)
++|+|||+|++|+.+|.+|.+...+ ...|.|+|+.+.+|...-...--+...++ ..........+-..+.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~---~~~Isi~e~~~~~G~GiaYs~~~p~~~lN-----v~a~~mS~~~pD~p~~F~ 73 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP---SGLISIFEPRPNFGQGIAYSTEEPEHLLN-----VPAARMSAFAPDIPQDFV 73 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC---CCceEEeccccccCCCccCCCCCchhhhc-----cccccccccCCCCchHHH
Confidence 6899999999999999999987332 22399999999988633211111100000 00000000000001111
Q ss_pred EEeccC-CccccCCCCCCCCcEEEcHHHHHHHHHHHHHh---cC----CEEecCceEEEEEEcCCCcEEEEEeCcCcccc
Q 006466 187 WFLTKD-RAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE---LG----VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (644)
Q Consensus 187 ~~~~~~-~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~---~G----v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~ 258 (644)
.|+... .....+......+.....|..+-++|.++... .+ +.. ...+++++..++++...-|.+.+
T Consensus 74 ~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~-~~~~a~~~~~~~n~~~~~~~~~~----- 147 (474)
T COG4529 74 RWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRT-IREEATSVRQDTNAGGYLVTTAD----- 147 (474)
T ss_pred HHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeE-EeeeeecceeccCCceEEEecCC-----
Confidence 233221 11111222333445556777777777776542 22 333 34566677766556565666665
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchH
Q 006466 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (644)
Q Consensus 259 ~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~ 289 (644)
|....||.+|+|+|.-.....
T Consensus 148 ----------g~~~~ad~~Vlatgh~~~~~~ 168 (474)
T COG4529 148 ----------GPSEIADIIVLATGHSAPPAD 168 (474)
T ss_pred ----------CCeeeeeEEEEeccCCCCCcc
Confidence 677899999999997654443
No 305
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=3.7e-06 Score=92.89 Aligned_cols=43 Identities=40% Similarity=0.597 Sum_probs=39.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
....+|||||||+|||+||..|.+. |++|+|+|.++.+||++.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~------G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF------GFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc------CCceEEEeccCCcCceeE
Confidence 3467999999999999999999999 999999999999998763
No 306
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.06 E-value=1.1e-05 Score=87.84 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=34.7
Q ss_pred cccEEEECCCHHHHHHHHHHH-hhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLK-QLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La-~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
...|+||||||||+.+|..|. +. |++|+|+||.+.++|..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~------g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE------RVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc------CCeEEEEecCCCCccEE
Confidence 357999999999999999765 56 99999999999988743
No 307
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.06 E-value=8e-06 Score=90.87 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
..+|+|||||++|+++|..|++. |++|+|+|+.+.+|+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 46999999999999999999999 999999999988775
No 308
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.05 E-value=0.00046 Score=73.54 Aligned_cols=42 Identities=38% Similarity=0.541 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
...|||||||.|||+||.+|-++. ...|+|+|..+++||.+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~g-----f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENG-----FIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhC-----CceEEEEEeccccCceEe
Confidence 458999999999999999999661 678999999999998764
No 309
>PLN02546 glutathione reductase
Probab=98.05 E-value=5.2e-05 Score=85.49 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=75.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+|||||..|+..|..|++. |.+|+|+|+.+.+... +
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~------g~~Vtlv~~~~~il~~------~----------------------------- 291 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL------KSDVHVFIRQKKVLRG------F----------------------------- 291 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEEeccccccc------c-----------------------------
Confidence 4899999999999999999998 9999999987654320 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||+++.++.++++..++++.+ .|.+.+
T Consensus 292 -----------------------d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~-------------- 333 (558)
T PLN02546 292 -----------------------DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK-------------- 333 (558)
T ss_pred -----------------------CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC--------------
Confidence 023345677777889999999999999976554533 354433
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
+....+|.||.|.|..+..
T Consensus 334 -g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 334 -GTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred -eEEEecCEEEEeeccccCC
Confidence 3445589999999998864
No 310
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=98.04 E-value=1.9e-06 Score=66.15 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=34.7
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCC-CCce
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPK-QNIK 629 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~-~~i~ 629 (644)
|++.|+.|. .|..+||.++++....+++. ++.++++.|+.|| .|...||+ ++|+
T Consensus 4 d~~~Ci~Cg------~C~~~Cp~~~~~~i~~~~~~-~~~v~~~~C~GCg---~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 4 DEDKCIGCG------KCVRACPDGAIDAIEVDEGK-KVPVNPDKCIGCG---LCVKVCPVKDAIT 58 (59)
T ss_dssp -TTT----S------CCCHHCCCCS-S-ECCTTTT-SSECE-TT--S-S---CCCCCSSSTTSEE
T ss_pred CcccccChh------hHHhHcCccceeeEEecCCe-eEEeccccCcCcC---cccccCCCccCCC
Confidence 789999987 69999999888765433222 5678899999999 99999996 9986
No 311
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.03 E-value=9.7e-06 Score=93.34 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=36.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGG 347 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCC
Confidence 357899999999999999999999 999999999998876
No 312
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.02 E-value=4.5e-05 Score=84.90 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||+|+.|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL------GAEVTILEALPAFLAA------A----------------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCccCCc------C-----------------------------
Confidence 4799999999999999999998 9999999998754210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.|++++.+++|+++..+++ .+ .|.+.+ .+|+
T Consensus 223 -----------------------d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~----~~g~------ 267 (475)
T PRK06327 223 -----------------------DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTD----ADGE------ 267 (475)
T ss_pred -----------------------CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEe----CCCc------
Confidence 023345566777788999999999999986653 33 354433 1222
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
..++.+|.||+|+|..+.
T Consensus 268 -~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 268 -AQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred -eeEEEcCEEEEccCCccC
Confidence 146999999999998875
No 313
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.02 E-value=4.2e-05 Score=85.95 Aligned_cols=99 Identities=29% Similarity=0.363 Sum_probs=73.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|+|||||+.|+.+|..|++. +.+|+|+|+.+.+..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~------g~~Vtli~~~~~l~~------------------------------------ 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGI------VRHVTVLEFADELKA------------------------------------ 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhc------CcEEEEEEeCCcCCh------------------------------------
Confidence 35899999999999999999998 999999997654321
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
...+.+.+++ .||+|++++.++++..++ +.+.+|.+.+. .+|+
T Consensus 390 ----------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~---~~~~---- 433 (515)
T TIGR03140 390 ----------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDR---NSGE---- 433 (515)
T ss_pred ----------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEEC---CCCc----
Confidence 1123444454 599999999999987553 56666776541 1122
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
+.++.+|.||.|.|..+.
T Consensus 434 ---~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 434 ---EKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred ---EEEEEcCEEEEEeCCcCC
Confidence 357999999999997763
No 314
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=2.7e-05 Score=81.17 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=95.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc---cccCccChHHHHHHhhhhhhcCCCeeeec
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPV 181 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~ 181 (644)
+..+|+|.||-||+-|++|+.|... .+.+++.+||.+....|. +.|..+.-..+.+|. ....|
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLV----Tl~~P----- 68 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLV----TLVDP----- 68 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccchhhhc----cccCC-----
Confidence 4569999999999999999999987 258899999999877652 122222222222211 00000
Q ss_pred cCCcEEEe---ccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEE--EEeCcCcc
Q 006466 182 SSDKFWFL---TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG--IGTNDMGI 256 (644)
Q Consensus 182 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~g--V~~~d~g~ 256 (644)
...+.|+ .....+ ..+-+...+.+.|.++.+++.=.|... -.+++|..|++|...+.+.+.. |.+.+
T Consensus 69 -Ts~ySFLNYL~~h~RL---y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~--- 140 (436)
T COG3486 69 -TSPYSFLNYLHEHGRL---YEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN--- 140 (436)
T ss_pred -CCchHHHHHHHHcchH---hhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC---
Confidence 0111111 111110 012233467789999999988888877 6789999999773322222222 44443
Q ss_pred ccCCCcccccccceEEEcCEEEEecCCCCcchHHH
Q 006466 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (644)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l 291 (644)
+...+|+.+|++.|..+.+-..+
T Consensus 141 ------------~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 141 ------------GTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred ------------CcEEEeeeEEEccCCCcCCChHH
Confidence 46899999999999988766543
No 315
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=6.7e-05 Score=83.36 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+|||||+.|+.+|..|++. |.+|+|||+.+.+... ++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~il~~------~d---------------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL------GSEVDVVEMFDQVIPA------AD---------------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCCc------CC----------------------------
Confidence 4799999999999999999999 9999999998754320 00
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
..+.+.+.+.+++. +++++++.++++..++++ + .|.+.+ .+|+
T Consensus 215 ------------------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~----~~~~------ 257 (471)
T PRK06467 215 ------------------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEG----KKAP------ 257 (471)
T ss_pred ------------------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEe----CCCc------
Confidence 22344566666667 999999999999766533 3 344432 1111
Q ss_pred cceEEEcCEEEEecCCCCcch
Q 006466 268 RGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~ 288 (644)
+.++.+|.||.|.|.++.+.
T Consensus 258 -~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 258 -AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -ceEEEeCEEEEeecccccCC
Confidence 25799999999999988754
No 316
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.99 E-value=6.3e-05 Score=82.89 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-.|+|||+|+.|+.+|..|++. |.+|+|+|+++.+... +
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF------GSKVTILEAASLFLPR------------------E----------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCC------------------c-----------------
Confidence 4799999999999999999999 9999999997643210 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||++++++.++++..++ +.+ .|.+.+
T Consensus 198 -----------------------~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~-------------- 238 (441)
T PRK08010 198 -----------------------DRDIADNIATILRDQGVDIILNAHVERISHHE-NQV-QVHSEH-------------- 238 (441)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcC--------------
Confidence 02334557777888999999999999997654 333 344432
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
.++.+|.||.|.|.++..
T Consensus 239 --g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 239 --AQLAVDALLIASGRQPAT 256 (441)
T ss_pred --CeEEeCEEEEeecCCcCC
Confidence 358899999999988863
No 317
>PRK07846 mycothione reductase; Reviewed
Probab=97.99 E-value=5.7e-05 Score=83.37 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d---------------------------- 206 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL------GVRVTVVNRSGRLLRH------LD---------------------------- 206 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCccccc------cC----------------------------
Confidence 5799999999999999999998 9999999998754210 00
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
.++.+.+.+. .+.|++++++++++++..++ +.+ .|.+.+
T Consensus 207 ------------------------~~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~-------------- 245 (451)
T PRK07846 207 ------------------------DDISERFTEL-ASKRWDVRLGRNVVGVSQDG-SGV-TLRLDD-------------- 245 (451)
T ss_pred ------------------------HHHHHHHHHH-HhcCeEEEeCCEEEEEEEcC-CEE-EEEECC--------------
Confidence 1122333332 34679999999999997654 333 355544
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||.|+|.++.
T Consensus 246 -g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 246 -GSTVEADVLLVATGRVPN 263 (451)
T ss_pred -CcEeecCEEEEEECCccC
Confidence 567999999999998875
No 318
>PRK12831 putative oxidoreductase; Provisional
Probab=97.98 E-value=5.6e-05 Score=83.69 Aligned_cols=112 Identities=25% Similarity=0.239 Sum_probs=77.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
.-+|+|||||..|+.+|..|++. |.+|+|+++.....
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~------Ga~Vtlv~r~~~~~------------------------------------- 317 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL------GAEVHIVYRRSEEE------------------------------------- 317 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCEEEEEeecCccc-------------------------------------
Confidence 35899999999999999999999 99999999865210
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCc---cccCCCcc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK 263 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g---~~~~G~~~ 263 (644)
++. . . ...+.+++.||+|++++.++++..+++|+|.+|.+..+. .+.+|...
T Consensus 318 ----------m~a----------~----~-~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~ 372 (464)
T PRK12831 318 ----------LPA----------R----V-EEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRR 372 (464)
T ss_pred ----------CCC----------C----H-HHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCcc
Confidence 000 0 0 012345678999999999999987766788777764221 12344322
Q ss_pred cccccc--eEEEcCEEEEecCCCCc
Q 006466 264 ENFQRG--VELRGRITLLAEGCRGS 286 (644)
Q Consensus 264 ~~~~~g--~~i~a~~vV~A~G~~s~ 286 (644)
....+| .++.+|.||.|.|..+.
T Consensus 373 ~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 373 PVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred ceecCCceEEEECCEEEECCCCCCC
Confidence 111122 36999999999997653
No 319
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.96 E-value=9.9e-05 Score=84.48 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=74.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+|||||..|+..|..|++. |.+|+|||+.+.+... ++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~------G~eVTLIe~~~~ll~~------~d---------------------------- 352 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL------GSEVVSFEYSPQLLPL------LD---------------------------- 352 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC------CCeEEEEeccCccccc------CC----------------------------
Confidence 4799999999999999999999 9999999998764320 00
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHH-HhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKA-EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a-~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
.++.+.+.+.. ++.||+|++++.|+++..++++..+.|.+.+.....++.+...+
T Consensus 353 ------------------------~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~ 408 (659)
T PTZ00153 353 ------------------------ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNM 408 (659)
T ss_pred ------------------------HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccccc
Confidence 12244445443 46899999999999998665433223433220000000000001
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
....++.+|.||.|+|.++.
T Consensus 409 ~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 409 NDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred ccceEEEcCEEEEEECcccC
Confidence 11247999999999997764
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.95 E-value=7.1e-05 Score=85.19 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=74.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||||+.|+.+|..|++. |.+|+|+++...+.. .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~-------~----------------------------- 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL------GSKVTILARSTLFFR-------E----------------------------- 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEecCccccc-------c-----------------------------
Confidence 5799999999999999999999 999999997532110 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||++++++.++++..++ +.+ .+.+.+
T Consensus 309 -----------------------d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~-~v~~~~-------------- 349 (561)
T PRK13748 309 -----------------------DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEF-VLTTGH-------------- 349 (561)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEE-EEEecC--------------
Confidence 02334567777788999999999999997654 333 344433
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
.++.+|.||+|.|..+..
T Consensus 350 --~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 350 --GELRADKLLVATGRAPNT 367 (561)
T ss_pred --CeEEeCEEEEccCCCcCC
Confidence 359999999999998864
No 321
>PRK14694 putative mercuric reductase; Provisional
Probab=97.95 E-value=7.9e-05 Score=82.77 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=73.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||+|+.|+.+|..|++. |.+|+|+++...+.. .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~------g~~Vtlv~~~~~l~~-------~----------------------------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL------GSRVTVLARSRVLSQ-------E----------------------------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCCCCC-------C-----------------------------
Confidence 4799999999999999999999 999999987432110 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+.+.+.+.+++.||++++++.++++..++ +.+ .+.+.+
T Consensus 217 -----------------------~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~~-~v~~~~-------------- 257 (468)
T PRK14694 217 -----------------------DPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-REF-ILETNA-------------- 257 (468)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEECC--------------
Confidence 02335567777888999999999999987654 322 354432
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
.++.+|.||+|+|.++..
T Consensus 258 --~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 258 --GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred --CEEEeCEEEEccCCCCCc
Confidence 369999999999998754
No 322
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.94 E-value=1.3e-05 Score=87.52 Aligned_cols=39 Identities=41% Similarity=0.542 Sum_probs=36.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
..|.|||||||||++|..|++. |+.|+|+|+.+.+|+-.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll 162 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLL 162 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeE
Confidence 6899999999999999999999 99999999999988743
No 323
>PRK14727 putative mercuric reductase; Provisional
Probab=97.93 E-value=9e-05 Score=82.53 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||||+.|+.+|..|++. |.+|+|+++...+.. +
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~l~~-------~----------------------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL------GSRVTILARSTLLFR-------E----------------------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCCCc-------c-----------------------------
Confidence 5799999999999999999998 999999987431110 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||+++++++|+++..++++ + .|.+.+
T Consensus 227 -----------------------d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~-~-~v~~~~-------------- 267 (479)
T PRK14727 227 -----------------------DPLLGETLTACFEKEGIEVLNNTQASLVEHDDNG-F-VLTTGH-------------- 267 (479)
T ss_pred -----------------------hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE-E-EEEEcC--------------
Confidence 0233556777788899999999999999765532 2 344433
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
.++.+|.||+|.|.++..
T Consensus 268 --g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 268 --GELRAEKLLISTGRHANT 285 (479)
T ss_pred --CeEEeCEEEEccCCCCCc
Confidence 358999999999998854
No 324
>PRK13984 putative oxidoreductase; Provisional
Probab=97.93 E-value=1.8e-05 Score=90.83 Aligned_cols=39 Identities=44% Similarity=0.551 Sum_probs=35.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
...+|+|||+|+||+++|..|++. |++|+|+|+.+.+|+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCc
Confidence 356899999999999999999999 999999999988765
No 325
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.92 E-value=3.5e-05 Score=82.22 Aligned_cols=109 Identities=26% Similarity=0.249 Sum_probs=73.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
...|||||||.+|+.+|..|.+.. ++.+|++|||++..--.. ++...
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~hl~~p-------------lL~ev---------------- 49 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDYHLFTP-------------LLYEV---------------- 49 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCccccch-------------hhhhh----------------
Confidence 457999999999999999999972 158999999998532210 00000
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcC-CEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
....++...+.--+.+.+...+ |+++.+ +|++|..++. .|.+.+
T Consensus 50 ------------------a~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k----~V~~~~------------ 94 (405)
T COG1252 50 ------------------ATGTLSESEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAK----KVTLAD------------ 94 (405)
T ss_pred ------------------hcCCCChhheeccHHHHhcccCceEEEEE-EEEEEcccCC----EEEeCC------------
Confidence 0111222233333555555455 888866 6999987763 366654
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
+..+.+|++|+|.|+...
T Consensus 95 ---~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 95 ---LGEISYDYLVVALGSETN 112 (405)
T ss_pred ---CccccccEEEEecCCcCC
Confidence 467999999999998764
No 326
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.91 E-value=0.0001 Score=76.47 Aligned_cols=98 Identities=22% Similarity=0.303 Sum_probs=71.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|+|||+|+.|+.+|..|++. +.+|+++++.+.+..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~------~~~V~~v~~~~~~~~------------------------------------ 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRI------AKKVTLVHRRDKFRA------------------------------------ 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhh------cCEEEEEEeCcccCc------------------------------------
Confidence 35899999999999999999998 999999998753210
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
...+.+.+++. |++++++++++++..++ .+..|.+.+. .+|+
T Consensus 179 ----------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~---~~g~---- 221 (300)
T TIGR01292 179 ----------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNT---VTGE---- 221 (300)
T ss_pred ----------------------------CHHHHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEec---CCCc----
Confidence 11134445566 99999999999987543 4555655330 1222
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
+.++.+|.||.|+|.++.
T Consensus 222 ---~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 222 ---EEELKVDGVFIAIGHEPN 239 (300)
T ss_pred ---eEEEEccEEEEeeCCCCC
Confidence 468999999999997654
No 327
>PLN02268 probable polyamine oxidase
Probab=97.91 E-value=1.1e-05 Score=88.85 Aligned_cols=40 Identities=28% Similarity=0.532 Sum_probs=37.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
.+|+|||||+|||+||+.|.+. |++|+|+|+++.+||++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~------g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA------SFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCCCCCceee
Confidence 3799999999999999999998 999999999999999764
No 328
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.90 E-value=0.00011 Score=81.20 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=71.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
..|+|||||+.|+.+|..|++. |.+|++||+.+.+... ++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d---------------------------- 209 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL------GTRVTIVNRSTKLLRH------LD---------------------------- 209 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccccc------cC----------------------------
Confidence 5799999999999999999998 9999999987654210 00
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
..+.+.+.+. .+.|+++++++.|+++..++++ + .|.+.+
T Consensus 210 ------------------------~~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~~~-v-~v~~~~-------------- 248 (452)
T TIGR03452 210 ------------------------EDISDRFTEI-AKKKWDIRLGRNVTAVEQDGDG-V-TLTLDD-------------- 248 (452)
T ss_pred ------------------------HHHHHHHHHH-HhcCCEEEeCCEEEEEEEcCCe-E-EEEEcC--------------
Confidence 1112233332 3458999999999999866533 3 355543
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||+|+|.++.
T Consensus 249 -g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 249 -GSTVTADVLLVATGRVPN 266 (452)
T ss_pred -CCEEEcCEEEEeeccCcC
Confidence 567999999999998875
No 329
>PRK10262 thioredoxin reductase; Provisional
Probab=97.89 E-value=9.8e-05 Score=77.74 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=76.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
...|+|||+|..|+.+|..|++. +.+|+++++.+.+...
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~------~~~Vtlv~~~~~~~~~----------------------------------- 184 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNI------ASEVHLIHRRDGFRAE----------------------------------- 184 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhh------CCEEEEEEECCccCCC-----------------------------------
Confidence 35799999999999999999999 9999999997643210
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
..+.+.+.+.+++.||++++++.++++..++ +.+.+|++.+.. .+++
T Consensus 185 -------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~--~~~~----- 231 (321)
T PRK10262 185 -------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQ--NSDN----- 231 (321)
T ss_pred -------------------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcC--CCCe-----
Confidence 1123445666778899999999999997554 346567665310 0111
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 006466 267 QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (644)
..++.+|.||.|.|..+.
T Consensus 232 --~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 232 --IESLDVAGLFVAIGHSPN 249 (321)
T ss_pred --EEEEECCEEEEEeCCccC
Confidence 357999999999997763
No 330
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.88 E-value=0.00012 Score=81.84 Aligned_cols=97 Identities=24% Similarity=0.198 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-+|+|||||+.|+.+|..|++. |.+|+|+++.. +... ++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~-~l~~------~d---------------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL------GFDVTVAVRSI-PLRG------FD---------------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCc-cccc------CC----------------------------
Confidence 4799999999999999999999 99999998742 2110 00
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
..+.+.+.+.+++.||+++.++.+.++...+ +.+ .|.+.+
T Consensus 222 ------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~-------------- 261 (499)
T PTZ00052 222 ------------------------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSD-------------- 261 (499)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECC--------------
Confidence 1234556777788999999999999887654 323 455544
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
|.++.+|.||.|.|..+.
T Consensus 262 -g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 262 -GTTELFDTVLYATGRKPD 279 (499)
T ss_pred -CCEEEcCEEEEeeCCCCC
Confidence 567899999999998764
No 331
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.88 E-value=1.4e-05 Score=85.43 Aligned_cols=40 Identities=43% Similarity=0.604 Sum_probs=36.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
+||+|||||++|+++|..|++. |.+|+|||+++.+|+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~------G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL------NKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCcee
Confidence 6999999999999999999998 999999999988887543
No 332
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.88 E-value=9.8e-05 Score=83.04 Aligned_cols=99 Identities=26% Similarity=0.305 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|+|||||..|+.+|..|++. +.+|+|+++.+.+..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~------~~~Vtlv~~~~~l~~------------------------------------ 388 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGI------VKHVTVLEFAPELKA------------------------------------ 388 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCEEEEEEECccccc------------------------------------
Confidence 35899999999999999999998 999999998764321
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHh-cCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
...|.+.+.+ .||++++++.++++..++ +.+.+|.+.+. .+|+
T Consensus 389 ----------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~---~~g~---- 432 (517)
T PRK15317 389 ----------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDR---TTGE---- 432 (517)
T ss_pred ----------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEEC---CCCc----
Confidence 0123334444 589999999999997654 56767776541 1232
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..++.+|.|+.|.|..+.
T Consensus 433 ---~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 433 ---EHHLELEGVFVQIGLVPN 450 (517)
T ss_pred ---EEEEEcCEEEEeECCccC
Confidence 257999999999998763
No 333
>COG1146 Ferredoxin [Energy production and conversion]
Probab=97.85 E-value=1.2e-05 Score=63.93 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=47.7
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPE 634 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~ 634 (644)
|++.|+.|. .|..+||.+++.+..+. ++..+.+|.+.|+.|| .|...||.++|......
T Consensus 6 d~~~C~~c~------~C~~~CP~~~~~~~~~~-~~~~~~~~~e~C~~C~---~C~~~CP~~aI~~~~~~ 64 (68)
T COG1146 6 DYDKCIGCG------ICVEVCPAGVFDLGEDE-GGKPVVARPEECIDCG---LCELACPVGAIKVDILR 64 (68)
T ss_pred CchhcCCCC------hheeccChhhEEecccc-CcceeEeccccCccch---hhhhhCCcceEEEeccc
Confidence 667787754 79999999999987543 2336899999999999 99999999999665443
No 334
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00016 Score=73.25 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=42.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCC---C-----CCCCcccccCccChHHH
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG---A-----EVGAHIISGNVFEPRAL 163 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~---~-----~~g~~~~~g~~i~~~~l 163 (644)
-+||.||||||.+||++|-.+++. |.+|.++|-- + .+|+.|.+.+||+.+-+
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~------G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLM 77 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADL------GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLM 77 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhc------CCcEEEEeecccCCCCCccccCceeeecccccHHHH
Confidence 479999999999999999999999 9999999842 1 25677777788876544
No 335
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.85 E-value=1.5e-05 Score=89.10 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
...|.+.|.+.+++.|++|++++.|++|..++ +.+.+|.+.+. .+|+ +.++.||.||.+...+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence 46788899999999999999999999998876 45556766440 0111 2578999999998864
No 336
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.84 E-value=3.2e-05 Score=90.03 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g 149 (644)
...+|+|||||||||+||+.|++. |++|+|+|+.+..|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~------Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS------GHNVTAIDGLKITL 419 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC------CCeEEEEccccccc
Confidence 457899999999999999999999 99999999976543
No 337
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.84 E-value=0.00013 Score=82.36 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHH
Q 006466 214 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 293 (644)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~ 293 (644)
...+|.....+.|++|+.++.|.+|..++ ++++||++.+. |.. ...+.+|.||+|.|+.. ..+|..
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~-----~~~------~~~~~ak~VIlaAGai~--SP~LLl 261 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKG-----GRK------EHTEANKEVILSAGAIN--SPQLLQ 261 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeC-----CcE------EEEEEeeeEEEccCCCC--CHHHHH
Confidence 33444443335579999999999999874 78889987541 110 12468999999999854 234444
Q ss_pred HcCCC
Q 006466 294 NFKLR 298 (644)
Q Consensus 294 ~~~~~ 298 (644)
..|+-
T Consensus 262 ~SGIG 266 (532)
T TIGR01810 262 LSGIG 266 (532)
T ss_pred hcCCC
Confidence 44554
No 338
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=0.0002 Score=79.39 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|+|||+|+.|+.+|..|++. |.+|+++|+.+.+... +
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~---------------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRL------GVKVTVFERGDRILPL------E---------------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCcc------h----------------------------
Confidence 35899999999999999999999 9999999998754320 0
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
-.++.+.+.+.+++. ++++++++++++..+++..+ .++..+ |+
T Consensus 209 ------------------------d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~~~~~------~~----- 251 (460)
T PRK06292 209 ------------------------DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EELEKG------GK----- 251 (460)
T ss_pred ------------------------hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EEEEcC------Cc-----
Confidence 023355566777778 99999999999976543222 232222 11
Q ss_pred ccceEEEcCEEEEecCCCCcch
Q 006466 267 QRGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~l~ 288 (644)
+.++.+|.||.|.|..+.+.
T Consensus 252 --~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 252 --TETIEADYVLVATGRRPNTD 271 (460)
T ss_pred --eEEEEeCEEEEccCCccCCC
Confidence 35799999999999877543
No 339
>PLN02785 Protein HOTHEAD
Probab=97.83 E-value=0.00021 Score=81.06 Aligned_cols=35 Identities=43% Similarity=0.706 Sum_probs=31.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~ 147 (644)
..||+||||||.||+.+|.+|++ +.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence 36999999999999999999998 479999999863
No 340
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.82 E-value=0.00018 Score=80.19 Aligned_cols=100 Identities=25% Similarity=0.254 Sum_probs=73.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
-.|+|||||+.|+.+|..|++. |.+|+|+++. .+... +
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~-~~l~~------~----------------------------- 218 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS-ILLRG------F----------------------------- 218 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh------CCcEEEEEec-ccccc------c-----------------------------
Confidence 3699999999999999999999 9999999874 22110 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-..+.+.+.+.+++.||+|++++.++++...+ +.+ .|++.+ |+
T Consensus 219 -----------------------d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~------~~------ 261 (484)
T TIGR01438 219 -----------------------DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTD------ST------ 261 (484)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEec------CC------
Confidence 02335566777788999999999998887654 333 355433 11
Q ss_pred cceEEEcCEEEEecCCCCc
Q 006466 268 RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (644)
.+.++.+|.||.|.|..+.
T Consensus 262 ~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 262 NGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred cceEEEeCEEEEEecCCcC
Confidence 0247999999999998765
No 341
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.81 E-value=0.00011 Score=74.77 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=36.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
..+|.|||+|++||+||+.|++. .+|+++|.+..+|+|.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-------cceEEEeccccccCcc
Confidence 46899999999999999999995 8999999999999876
No 342
>PLN02568 polyamine oxidase
Probab=97.74 E-value=3.1e-05 Score=86.93 Aligned_cols=47 Identities=38% Similarity=0.518 Sum_probs=38.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
++..||+|||||++||++|+.|++... ..+|++|+|+|++..+|+.+
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCeE
Confidence 345799999999999999999998710 00139999999999998865
No 343
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=3.6e-05 Score=77.71 Aligned_cols=40 Identities=38% Similarity=0.507 Sum_probs=37.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCccc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (644)
+|++|||||.+|+..|..|+++ |.+|.||||++.+||.+-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~------gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL------GKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc------CCEEEEEeccccCCCccc
Confidence 7999999999999999999999 999999999999998763
No 344
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.70 E-value=2.9e-05 Score=69.21 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=48.4
Q ss_pred cEEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeC
Q 006466 561 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
++.+ |.+.|+.|. .|+..||.+++++.++. ..+.++...|+.|| .|...||.++|+++.
T Consensus 36 ~i~i-~~~~Ci~C~------~C~~~CP~~ai~~~~~~---~~~~i~~~~C~~Cg---~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 36 KILY-DVDKCVGCR------MCVTVCPAGVFVYLPEI---RKVALWTGRCVFCG---QCVDVCPTGALQMSD 94 (120)
T ss_pred eEEE-CcccCcCcc------cHHHHCCccceEccccc---cceEecCCcCcChh---hhHHhCCcCcEEecc
Confidence 4555 678898886 69999999999876431 15789999999999 999999999998764
No 345
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=3.4e-05 Score=83.29 Aligned_cols=40 Identities=38% Similarity=0.526 Sum_probs=37.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccc
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~ 154 (644)
.|+|+|||+|||+||+.|+.+ |++|+|+|+++.+||.+.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~------g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA------GYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC------CCceEEEeccCccCceeee
Confidence 699999999999999999999 9999999999999987644
No 346
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.66 E-value=4.5e-05 Score=80.71 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=43.8
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
..|+++|..|. -|.. ||-++++++ +-.+|.-.|-.|| +|.-.||.++|+..
T Consensus 557 ~vde~~C~gC~------~C~~-Cpf~ais~~-------ka~v~~~~C~gCG---~C~~aCp~gai~~~ 607 (622)
T COG1148 557 TVDEDKCTGCG------ICAE-CPFGAISVD-------KAEVNPLRCKGCG---ICSAACPSGAIDLA 607 (622)
T ss_pred ccchhhhcCCc------ceee-CCCCceecc-------ccccChhhhCccc---chhhhCCcccchhc
Confidence 44889999987 7999 999999975 3678999999999 99999999998653
No 347
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.65 E-value=0.0004 Score=74.49 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=68.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||+|++|+.+|..|++...+.+...+|+|+ ..+.+... +
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~------~----------------------------- 189 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG------F----------------------------- 189 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc------C-----------------------------
Confidence 47999999999999999998753222222588888 33222110 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+...+.+.+++.||+++.++.++++. + + .|.+.+
T Consensus 190 -----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~-------------- 226 (364)
T TIGR03169 190 -----------------------PAKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILAD-------------- 226 (364)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCC--------------
Confidence 01234556777788999999999998874 2 2 355554
Q ss_pred cceEEEcCEEEEecCCCC
Q 006466 268 RGVELRGRITLLAEGCRG 285 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s 285 (644)
|.++.+|.||.|.|..+
T Consensus 227 -g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 227 -GRTLPADAILWATGARA 243 (364)
T ss_pred -CCEEecCEEEEccCCCh
Confidence 67899999999999765
No 348
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.65 E-value=0.00035 Score=82.24 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=76.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCe-EEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
...|||||||..|+-+|..|.+. |.+ |+|+++++...
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~------Ga~~Vtlv~r~~~~~------------------------------------ 607 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRL------GAERVTIVYRRSEEE------------------------------------ 607 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCccc------------------------------------
Confidence 35799999999999999999999 887 99999865310
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCc---cccCCCc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSK 262 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g---~~~~G~~ 262 (644)
+|. ... ..+.+++.||++++++.++++..+++|.+.+|++..+. .+.+|..
T Consensus 608 -----------~~~----------~~~-----e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~ 661 (752)
T PRK12778 608 -----------MPA----------RLE-----EVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRR 661 (752)
T ss_pred -----------CCC----------CHH-----HHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCC
Confidence 000 000 12345678999999999999987776788777764221 1123432
Q ss_pred ccccc--cceEEEcCEEEEecCCCC
Q 006466 263 KENFQ--RGVELRGRITLLAEGCRG 285 (644)
Q Consensus 263 ~~~~~--~g~~i~a~~vV~A~G~~s 285 (644)
..... ...++.+|.||.|.|..+
T Consensus 662 ~~~~~~g~~~~i~~D~Vi~A~G~~p 686 (752)
T PRK12778 662 RPVAIPGSTFTVDVDLVIVSVGVSP 686 (752)
T ss_pred CceecCCCeEEEECCEEEECcCCCC
Confidence 11111 124699999999999665
No 349
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=97.63 E-value=4.4e-05 Score=77.86 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=47.5
Q ss_pred CCCCccccCCCCCCCCcceeeCC-eeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa-~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
.+..|..|. ..+|+.+||+ ++|...++ + .+.||.+.|+.|+ .|...||++.|.|...
T Consensus 89 ~~~~C~hC~----~p~Cv~aCP~~gA~~~~~~--G--~V~id~dkCigC~---~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 89 RKDGCMHCR----EPGCLKACPAPGAIIQYQN--G--IVDFDHSKCIGCG---YCIVGCPFNIPRYDKV 146 (283)
T ss_pred CCccCCCCC----CccccCCCCcCCeEEEcCC--C--cEEEeHHHCCcch---HHHhhCCCCCcEEcCC
Confidence 566798887 7789999998 77865433 2 6899999999999 9999999999998653
No 350
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=97.62 E-value=2.3e-05 Score=58.61 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCCCccccCCCCCCCCcceeeCC-eeEEEecCCCCceeEEEecCCcccCCCCcceeeeCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDP 624 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa-~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p 624 (644)
|++.|+.|. .|+++||+ ....+...+ ..+.++..+|++|| .|...||
T Consensus 5 d~~~C~~C~------~C~~~CP~~~~~~~~~~~---~~~~~~~~~C~~Cg---~C~~~CP 52 (52)
T PF13237_consen 5 DEDKCIGCG------RCVKVCPADNAIAIDDGE---KKVEIDPERCIGCG---ACVEVCP 52 (52)
T ss_dssp -TT------------TTGGG-TT-----EEE-S---SSEEE-TTT--TTS---HHHHH-T
T ss_pred CcccCcCCc------ChHHHccchhHHHhhccC---CCeEeCcccccccC---hhhhhCc
Confidence 889999987 79999999 333333221 16888999999999 9999998
No 351
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.61 E-value=0.00044 Score=76.61 Aligned_cols=111 Identities=26% Similarity=0.251 Sum_probs=73.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-eEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
.-.|+|||||..|+.+|..|++. |. +|+++++.+...-
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~------G~~~Vtlv~~~~~~~~----------------------------------- 311 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL------GAESVTIVYRRGREEM----------------------------------- 311 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCcccC-----------------------------------
Confidence 45899999999999999999998 88 8999998643100
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcC---ccccCCCc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~---g~~~~G~~ 262 (644)
+. .....+.+++.||++++++.++++..++ +.+.+|++..+ ..+.+|..
T Consensus 312 ------------~~---------------~~~~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~ 363 (457)
T PRK11749 312 ------------PA---------------SEEEVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRR 363 (457)
T ss_pred ------------CC---------------CHHHHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCc
Confidence 00 0112455677899999999999987655 33445554321 01123321
Q ss_pred cc-ccccceEEEcCEEEEecCCCCc
Q 006466 263 KE-NFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 263 ~~-~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
.. .-.++.++.+|.||.|.|..+.
T Consensus 364 ~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 364 RVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred ccCCCCceEEEECCEEEECccCCCC
Confidence 10 0012467999999999997653
No 352
>CHL00065 psaC photosystem I subunit VII
Probab=97.60 E-value=1.6e-05 Score=65.63 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=46.9
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCC---CceeEEEecCCcccCCCCcceeeeCCCCCceeeCCCC
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPEG 635 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~---~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~g 635 (644)
.+.+.|+.|. .|+.+||.+++++.+... ......++.+.|+.|+ .|...||.++|+|++=.|
T Consensus 6 ~~~~~Ci~Cg------~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~---~C~~~CP~~Ai~~~~~~~ 70 (81)
T CHL00065 6 KIYDTCIGCT------QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCK---RCESACPTDFLSVRVYLG 70 (81)
T ss_pred CccccCCChh------HHHHHCCccchhheeccccccccccccCCCCcCCChh---hhhhhcCccccEEEEEec
Confidence 3567898887 699999999988754321 1112356789999999 999999999999876433
No 353
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.003 Score=63.43 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhc-hhcCCCCeEEEEcCCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLC-REKNVDLSVCVVEKGAE 147 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~-~~~~~G~~V~viEk~~~ 147 (644)
..+|+|||+|..||++|+.+.+.. +..-|-++|+|++-...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 468999999999999999888852 12235689999987654
No 354
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.58 E-value=0.00056 Score=75.89 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=75.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-eEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
...|+|||+|..|+.+|..+.+. |. +|+|+++++...-
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~------Ga~~Vtvv~r~~~~~~----------------------------------- 320 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL------GAASVTCAYRRDEANM----------------------------------- 320 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEEEecCcccC-----------------------------------
Confidence 45899999999999999999998 85 7999998764210
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcC---ccccCCCc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~---g~~~~G~~ 262 (644)
+. .....+.+++.||++++++.++++..+++|.+.+|++..+ ..+.+|..
T Consensus 321 ------------~~---------------~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 373 (467)
T TIGR01318 321 ------------PG---------------SRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRR 373 (467)
T ss_pred ------------CC---------------CHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCc
Confidence 00 0012344567899999999999997766677777765321 12234432
Q ss_pred cccc--ccceEEEcCEEEEecCCCC
Q 006466 263 KENF--QRGVELRGRITLLAEGCRG 285 (644)
Q Consensus 263 ~~~~--~~g~~i~a~~vV~A~G~~s 285 (644)
.... ....++.+|.||.|.|..+
T Consensus 374 ~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 374 RPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred cceecCCceEEEECCEEEECCcCCC
Confidence 1111 1235799999999999665
No 355
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.56 E-value=0.00049 Score=73.50 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=70.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCe-EEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
-.|+|||+|+.|+.+|..|++. |.+ |+|+++.+....
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~------g~~~Vtvi~~~~~~~~------------------------------------ 210 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL------GAEKVYLAYRRTINEA------------------------------------ 210 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeecchhhC------------------------------------
Confidence 4799999999999999999988 887 999987642110
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc---cCCCcc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA---KDGSKK 263 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~---~~G~~~ 263 (644)
+. ...+.+.+++.|+++++++.++++..+ +.+..|++.+...+ ..+.++
T Consensus 211 -----------~~---------------~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~ 262 (352)
T PRK12770 211 -----------PA---------------GKYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPR 262 (352)
T ss_pred -----------CC---------------CHHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcC
Confidence 00 011234467789999999999998643 34555654321110 000000
Q ss_pred --cccccceEEEcCEEEEecCCCCc
Q 006466 264 --ENFQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 264 --~~~~~g~~i~a~~vV~A~G~~s~ 286 (644)
..-..+.++.+|.||.|.|.++.
T Consensus 263 ~~~~~~~~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 263 PVPIPGSEFVLEADTVVFAIGEIPT 287 (352)
T ss_pred ceecCCCeEEEECCEEEECcccCCC
Confidence 00012467999999999997763
No 356
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=97.55 E-value=5.7e-05 Score=72.39 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=47.8
Q ss_pred CCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
+..|.-|. +-||+.+||+++....+. +| .+.||.+.||.|| -|..+||+++...+.-
T Consensus 66 ~~~C~HC~----~ppCv~vCPtgA~~k~~~-dG--iV~vd~d~CIGC~---yCi~ACPyga~~~~~~ 122 (203)
T COG0437 66 SISCMHCE----DPPCVKVCPTGALFKREE-DG--IVLVDKDLCIGCG---YCIAACPYGAPQFNPD 122 (203)
T ss_pred cccccCCC----CCcccccCCCcceEEecC-CC--EEEecCCcccCch---HHHhhCCCCCceeCcc
Confidence 46688888 889999999998876631 22 7899999999999 9999999999877663
No 357
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.47 E-value=0.00013 Score=76.35 Aligned_cols=45 Identities=36% Similarity=0.535 Sum_probs=39.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~ 154 (644)
+..+|+|||||++||++|+.|+++ .+...|+|+|+.+++|+.+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~----~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARL----GPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhc----CCCceEEEEecCCcccceeee
Confidence 467899999999999999999998 445667789999999998766
No 358
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00026 Score=81.20 Aligned_cols=39 Identities=41% Similarity=0.632 Sum_probs=36.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (644)
....|.|||+|||||+||-.|-+. |+.|+|+||.+.+|+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGG 1822 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCc
Confidence 357899999999999999999999 999999999999887
No 359
>PLN02529 lysine-specific histone demethylase 1
Probab=97.43 E-value=0.00015 Score=83.52 Aligned_cols=41 Identities=39% Similarity=0.542 Sum_probs=37.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
...||+|||||++||+||..|++. |++|+|+|+++.+|+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~------g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF------GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc------CCcEEEEecCccCcCce
Confidence 457999999999999999999999 99999999998888754
No 360
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=97.40 E-value=0.00012 Score=59.79 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=44.6
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
.+++.|+.|. .|+.+||.+++.+..+. ...++...|..|+ .|...||+++|+-.
T Consensus 22 i~~~~C~~C~------~C~~~Cp~~ai~~~~~~----~~~i~~~~C~~C~---~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 22 VDKEKCIKCK------NCWLYCPEGAIQEDEGG----FVGIDYDYCKGCG---ICANVCPVKAIEMV 75 (78)
T ss_pred EcCCcCcChh------HHHhhcCccceEecCCC----cEEecCccCcCcc---chhhhCCccccEec
Confidence 3678898876 69999999998875431 5778999999999 99999999988643
No 361
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=97.39 E-value=0.00013 Score=63.28 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=46.3
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
.|++.|+.|. .|+.+||.+++.+.++. .+.||...|..|+ .|...||.++|++.
T Consensus 48 i~~~~Ci~C~------~C~~~CP~~ai~~~~~~----~~~id~~~C~~Cg---~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 48 VDESKCVKCY------ICWKFCPEPAIYIKEDG----YVAIDYDYCKGCG---ICANECPTKAITMV 101 (105)
T ss_pred ECcccCcccc------chhhhCCHhheEecCCC----cEEeCchhCcCcc---hhhhhcCcCcEEec
Confidence 3788999887 79999999998765432 4789999999999 99999999999875
No 362
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.36 E-value=0.0002 Score=83.07 Aligned_cols=41 Identities=41% Similarity=0.568 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
...+|+|||||++||++|+.|++. |++|+|+|++..+|+.+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~------g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM------GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCcEEEEeccccCCCcc
Confidence 357999999999999999999998 99999999999888764
No 363
>PRK02106 choline dehydrogenase; Validated
Probab=97.34 E-value=0.00019 Score=81.49 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHc
Q 006466 216 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (644)
Q Consensus 216 ~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~ 295 (644)
.+|.......+++|+.++.|++|+.++ +++++|++.+ .++. -..+.++.||+|.|+..+ -+|....
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~----~~~~-------~~~~~ak~VILaaGai~T--P~LLl~S 270 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFEG-KRAVGVEYER----GGGR-------ETARARREVILSAGAINS--PQLLQLS 270 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEeC-CeEEEEEEEe----CCcE-------EEEEeeeeEEEccCCCCC--HHHHhhc
Confidence 344433334569999999999999985 6788998765 1121 135789999999998763 3444444
Q ss_pred CCC
Q 006466 296 KLR 298 (644)
Q Consensus 296 ~~~ 298 (644)
|+-
T Consensus 271 GIG 273 (560)
T PRK02106 271 GIG 273 (560)
T ss_pred CCC
Confidence 554
No 364
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=97.33 E-value=0.0002 Score=73.06 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=47.9
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
.+..|..|. +-+|+.+||.+++...++ ++ .+.||.+.|+.|+ .|...||+++|.++.-
T Consensus 127 ~p~~C~hC~----nP~Cv~aCPtgAI~k~ee-dG--iV~ID~ekCiGCg---~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 127 LPRICNHCT----NPACLAACPTGAIYKREE-DG--IVLVDQERCKGYR---YCVEACPYKKVYFNPQ 184 (321)
T ss_pred ecccCCCCC----CccchhhCCcCcEEEecC-CC--eEEECHHHCcchH---HHHHhCCCCCcEecCC
Confidence 678898887 668999999999864322 22 6789999999999 9999999999987653
No 365
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=97.32 E-value=0.00012 Score=59.58 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=45.1
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEE-EecCCcccCCCCcceeeeCCCCCceee
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQ-INAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~-~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.|.+.|+.|. -|..|||-+++...++.. .. |||.-|-.|| -|.-.||..+|+=.
T Consensus 31 v~d~~kCi~C~------~C~~yCPe~~i~~~~~~~----~~~idYdyCKGCG---ICa~vCP~kaI~Mv 86 (91)
T COG1144 31 VVDEDKCINCK------LCWLYCPEPAILEEEGGY----KVRIDYDYCKGCG---ICANVCPVKAIEMV 86 (91)
T ss_pred EEcccccccCc------eeEEECCchheeeccCCc----cceeEcccccCce---echhhCChhheEeE
Confidence 34778899986 699999999988765532 22 9999999999 99999999998643
No 366
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=97.32 E-value=0.00014 Score=62.95 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=48.0
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCC---CceeEEEecCCcccCCCCcceeeeCCCCCceeeC
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~---~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
+.+ |.+.|+.|. .|+.+||.+++++.++.. +.....+|...|+.|+ .|...||.++|++.-
T Consensus 11 v~i-d~~~Ci~C~------~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~---~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 11 VWV-DESRCKACD------ICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCR---ECELHCPDFAIYVAD 74 (103)
T ss_pred eEE-CcccccCCc------chhhhcChhhhccccccccccCceeeEeCCccCCCcC---cchhhCChhhEEEec
Confidence 444 889999886 799999999988764321 1123568899999999 999999999998754
No 367
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.32 E-value=0.0018 Score=77.44 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=74.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|||||||..|+-+|..+.+. |.+|+++.+++...
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~------Ga~Vtlv~rr~~~~------------------------------------- 483 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRL------GGNVTIVYRRTKSE------------------------------------- 483 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEEecCccc-------------------------------------
Confidence 35799999999999999999999 99999998764210
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCC-CcEEEEEeCcCc---cccCCCc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMG---IAKDGSK 262 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~-g~v~gV~~~d~g---~~~~G~~ 262 (644)
+|. . .. ..+.+.+.||++++++.++++..+++ +.|.+|.+..+. .+.+|..
T Consensus 484 ----------mpa----------~----~~-e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~ 538 (944)
T PRK12779 484 ----------MPA----------R----VE-ELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRR 538 (944)
T ss_pred ----------ccc----------c----HH-HHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCce
Confidence 000 0 01 12224567999999999999976643 467666553211 1233432
Q ss_pred cccc-ccceEEEcCEEEEecCCCCc
Q 006466 263 KENF-QRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 263 ~~~~-~~g~~i~a~~vV~A~G~~s~ 286 (644)
.... ....++.+|.||+|.|..+.
T Consensus 539 ~~~~~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 539 SPKPTGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred eeecCCceEEEECCEEEEcCCcCCC
Confidence 1111 11257999999999998864
No 368
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.29 E-value=0.002 Score=74.44 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=75.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-eEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
...|+|||+|..|+-+|..+.++ |. +|+++++++....
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~------Ga~~Vt~v~rr~~~~~----------------------------------- 489 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRL------NAASVTCAYRRDEVSM----------------------------------- 489 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCcccC-----------------------------------
Confidence 35899999999999999988888 85 7999988753211
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcC---ccccCCCc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~---g~~~~G~~ 262 (644)
|. ... ....+++.||++++++.++++..+++|+|.+|.+..+ ..+.+|..
T Consensus 490 ------------~~----------~~~-----e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 542 (639)
T PRK12809 490 ------------PG----------SRK-----EVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRR 542 (639)
T ss_pred ------------CC----------CHH-----HHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCc
Confidence 00 001 1123567899999999999998776677877755321 12334543
Q ss_pred cccccc--ceEEEcCEEEEecCCCC
Q 006466 263 KENFQR--GVELRGRITLLAEGCRG 285 (644)
Q Consensus 263 ~~~~~~--g~~i~a~~vV~A~G~~s 285 (644)
.....+ ..++.+|.||.|.|..+
T Consensus 543 ~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 543 RPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred cceecCCceEEEECCEEEECcCCCC
Confidence 222222 24789999999999654
No 369
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=97.29 E-value=0.00017 Score=69.18 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=49.0
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCC-CceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-NQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~-~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.+ |++.|+.|. .|+.+||.+++.+..+.. +...+.+|...|+.|| .|...||.++|+++
T Consensus 33 p~~-d~~~C~~C~------~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg---~C~~vCP~~AI~~~ 93 (180)
T PRK12387 33 PEY-NPQQCIGCA------ACVNACPSNALTVETDLATGELAWEFNLGRCIFCG---RCEEVCPTAAIKLS 93 (180)
T ss_pred eEE-ChhhCcChh------HHHHhcCccCeEeeccccCCcccceeccccCcCcc---chhhhcCcCceEcc
Confidence 444 788899886 699999999998765432 2335689999999999 99999999999876
No 370
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=97.28 E-value=9.6e-05 Score=64.02 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=45.0
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
|.+.|+.|. .|+.+||.+++...++. ...|+...|+.|+ .|...||.+.|++.
T Consensus 49 d~~~Ci~C~------~C~~~CP~~ai~~~~~~----~~~id~~~C~~Cg---~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 49 NRDKCVRCY------LCYIYCPEPAIYLDEEG----YPVFDYDYCKGCG---ICANECPTKAIEMV 101 (105)
T ss_pred ChhHCcChh------hHHhhCCHhhEEecCCC----cEEECchhCCCcC---chhhhcCcCcEEEe
Confidence 778898886 79999999988765431 4678999999999 99999999999875
No 371
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=97.28 E-value=0.00021 Score=75.82 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=49.0
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeC
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
.-.+..|..|. +.+|+.+||.+++...++ ++ .+.||.+.|+.|+ .|...||++.|.++.
T Consensus 177 ~y~p~~C~HC~----nP~CV~ACPtGAI~k~ee-dG--iV~ID~dkCiGCg---~CV~ACPygAI~~n~ 235 (492)
T TIGR01660 177 MYLPRLCEHCL----NPACVASCPSGAIYKREE-DG--IVLIDQDKCRGWR---MCISGCPYKKIYFNW 235 (492)
T ss_pred EECCCcCcCCC----cccchhhCccCCeEEecC-CC--eEEEehhhccChH---HHHHhCCCCCcEecC
Confidence 34788999887 678999999999875432 22 5789999999999 999999999998764
No 372
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=97.26 E-value=0.0001 Score=60.51 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=48.9
Q ss_pred cEEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCC---CceeEEEecCCcccCCCCcceeeeCCCCCceeeCCCCC
Q 006466 561 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPEGG 636 (644)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~---~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~gg 636 (644)
|+.. +.+.|+.|. .|+..||.+++++.+.+. +...+.++...|+.|+ .|...||++.|.|.+=.|+
T Consensus 2 ~~~~-~~~~Ci~C~------~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg---~C~~~CP~~ai~~~~~~~~ 70 (80)
T TIGR03048 2 HSVK-IYDTCIGCT------QCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCK---RCESACPTDFLSVRVYLGA 70 (80)
T ss_pred ccee-cCCcCcCcc------hHHHHCCccceeeecccccccccccCcCCCCcCcChh---HHHHhcCcccCEEEEecCc
Confidence 4433 567798886 699999999988754211 1112456779999999 9999999999999765543
No 373
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.26 E-value=0.0021 Score=72.92 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~ 147 (644)
..+|+|||||+.|+.+|..|++. |.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~------g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRY------ASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHcc------CCEEEEEEeCCc
Confidence 35899999999999999999998 999999998764
No 374
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=97.25 E-value=6.8e-05 Score=67.50 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=43.8
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEE--ecCCCCce---eEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEY--VPDEKNQL---KLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~--~~~~~~~~---~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
..+.|+.|. -|.++|||.++.+ .+..++.. +..||...||-|| -|...||.+.|.
T Consensus 109 geerCIACk------lCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG---~CqEaCPvdaiv 168 (212)
T KOG3256|consen 109 GEERCIACK------LCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCG---FCQEACPVDAIV 168 (212)
T ss_pred cchhhhhHH------HHHHhCCcccceeeceecCCccccceeecccceeeeeec---chhhhCCcccee
Confidence 357788887 6999999988754 33334433 4679999999999 999999999985
No 375
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.25 E-value=0.00022 Score=68.19 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=47.8
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCC-CceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-NQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~-~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
|++.|+.|. .|+.+||.+++....+.. +...+.++...|+.|| .|...||+++|++.
T Consensus 36 d~~~Ci~Cg------~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg---~C~~~CPt~AI~~~ 93 (181)
T PRK08222 36 MPSQCIACG------ACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCG---RCEEVCPTRAIQLT 93 (181)
T ss_pred ChhhCcchh------HHHHhCCccceEcccccccCccceeeccCcCcCCC---CcccccCcCeEEec
Confidence 778898886 799999999998764432 3345789999999999 99999999999875
No 376
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.24 E-value=0.0023 Score=77.21 Aligned_cols=112 Identities=24% Similarity=0.289 Sum_probs=75.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCe-EEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
..+|+|||||..|+-+|..+.++ |.+ |+++.+......
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rl------Ga~~Vtiv~rr~~~em----------------------------------- 609 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRL------GAPTVRCVYRRSEAEA----------------------------------- 609 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeecCcccC-----------------------------------
Confidence 46899999999999999999998 874 777776532100
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCc---cccCCCc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSK 262 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g---~~~~G~~ 262 (644)
|. .....+.+++.||++++++.++++..+++|.|.+|++..+. .+.+|..
T Consensus 610 ------------~a---------------~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~ 662 (1006)
T PRK12775 610 ------------PA---------------RIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRR 662 (1006)
T ss_pred ------------CC---------------CHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCc
Confidence 00 00012346778999999999999987777888888765321 1233432
Q ss_pred cccccc-ceEEEcCEEEEecCCCCc
Q 006466 263 KENFQR-GVELRGRITLLAEGCRGS 286 (644)
Q Consensus 263 ~~~~~~-g~~i~a~~vV~A~G~~s~ 286 (644)
...-.. ..++.+|.||.|.|..+.
T Consensus 663 ~~~~~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 663 KPMPTGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred cccCCCceEEEEcCEEEECCCcCCC
Confidence 111111 246999999999997764
No 377
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=97.24 E-value=3.7e-05 Score=57.50 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=31.6
Q ss_pred CcceeeCCeeEEEecCC--CCceeEEEecCCcccCCCCcceeeeCCCCC
Q 006466 581 PESRYCPARVYEYVPDE--KNQLKLQINAQNCLHCKDFQACDIKDPKQN 627 (644)
Q Consensus 581 ~~~~~cpa~~y~~~~~~--~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~ 627 (644)
.|+.+||.+++.+.+.. .+.+.+.+|.+.|++|| .|...||+++
T Consensus 7 ~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~---~C~~~CP~~A 52 (52)
T PF12838_consen 7 ACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCG---ACVEVCPTGA 52 (52)
T ss_dssp HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----S---HHHHHTTTS-
T ss_pred chHHhcCccccCcccccccCCceEEEEechhCcCcC---hhhhhCcCcC
Confidence 79999999999987643 23357899999999999 9999999863
No 378
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.23 E-value=0.00013 Score=73.27 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=47.3
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
.+..|..|. .-+|+.+||.+++...++ + .+.||.+.|+.|+ .|...||++.|.+...
T Consensus 96 ~~~~C~~C~----~p~Cv~~CP~~Ai~~~~~--G--~v~id~~~CigC~---~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 96 LPRLCNHCD----NPPCVPVCPVQATFQRED--G--IVVVDNKRCVGCA---YCVQACPYDARFINHE 152 (244)
T ss_pred cchhcCCcC----CccCccccCCCCEEECCC--C--CEEEcHHHCCCHH---HHHHhcCCCCCEEeCC
Confidence 367888887 568999999999865432 2 6889999999999 9999999999998743
No 379
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=97.22 E-value=0.0002 Score=71.13 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=46.6
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
++..|..|. ..+|+.+||++++...++ .+ .+.||.+.|+.|+ .|...||++.|.|.
T Consensus 90 ~~~~C~~C~----~~~Cv~~CP~gAi~~~~~-~g--~v~id~~~C~~C~---~C~~aCP~~A~~~~ 145 (225)
T TIGR03149 90 FRKSCQHCD----NAPCVAVCPTGASFKDEE-TG--IVDVHKDLCVGCQ---YCIAACPYRVRFIH 145 (225)
T ss_pred CchhccCCc----CcChHhhCCCCcEEEeCC-CC--eEEechhhCCcch---HHHHhCCCCCcEec
Confidence 577898887 568999999999875432 22 5789999999999 99999999998775
No 380
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00097 Score=68.95 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (644)
...|.|||+||||+.+|..|.++ .+++.|.|+||.+.+.+-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~----~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR----HPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc----CCCCeeEeeecCCcccce
Confidence 35899999999999999999885 248999999999987763
No 381
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=97.22 E-value=6.6e-05 Score=56.78 Aligned_cols=45 Identities=29% Similarity=0.528 Sum_probs=30.0
Q ss_pred CcceeeCCeeEEEecCCCCce----eEEEecCCcccCCCCcceeeeCCCCCc
Q 006466 581 PESRYCPARVYEYVPDEKNQL----KLQINAQNCLHCKDFQACDIKDPKQNI 628 (644)
Q Consensus 581 ~~~~~cpa~~y~~~~~~~~~~----~~~~~~~~c~~c~~~~~c~~~~p~~~i 628 (644)
-|+.+||++++++........ ....+.+.|++|| .|...||+++|
T Consensus 7 ~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---~C~~~CP~~AI 55 (55)
T PF13187_consen 7 RCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCG---ACVKACPTGAI 55 (55)
T ss_dssp HHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTC---HHHHHSTTT-E
T ss_pred hHHHHCCccCeEccCccccccccccccCCCCCccccHh---HHHHHcchhhC
Confidence 699999999999876543210 1111456899999 99999999887
No 382
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.19 E-value=0.00037 Score=65.78 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=43.6
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCC--CCc---eeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~--~~~---~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.+.|+.|. .|+.+||.+++.+.... ++. ....+|...|+.|| .|...||++.|...
T Consensus 56 ~~~~Ci~C~------~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg---~Cv~~CP~~Ai~~~ 117 (164)
T PRK05888 56 GEERCIACK------LCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCG---FCEEACPTDAIVET 117 (164)
T ss_pred CCccCCccc------ChHHHcCccccccccccCCCCcccceeeecCCCcCcccC---cchhhcCcCcceec
Confidence 345788886 79999999988764321 111 13679999999999 99999999999643
No 383
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=97.18 E-value=0.00012 Score=61.85 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=45.5
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEecCC-----------CCc----eeEEEecCCcccCCCCcceeeeCCCCCc
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDE-----------KNQ----LKLQINAQNCLHCKDFQACDIKDPKQNI 628 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~-----------~~~----~~~~~~~~~c~~c~~~~~c~~~~p~~~i 628 (644)
..|++.|+.|. .|+.+||.+++++.... .+. ..+.+|.+.|+.|| .|...||+++|
T Consensus 17 ~i~~~~Ci~C~------~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg---~C~~~CP~~AI 87 (91)
T TIGR02936 17 SIDQEKCIGCG------RCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCG---ACARVCPKKCQ 87 (91)
T ss_pred EECHhHCCCcc------hHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChh---hhhhhCCHhHE
Confidence 34889999887 79999999999875310 001 12468999999999 99999999999
Q ss_pred eee
Q 006466 629 KWT 631 (644)
Q Consensus 629 ~w~ 631 (644)
+..
T Consensus 88 ~~~ 90 (91)
T TIGR02936 88 THA 90 (91)
T ss_pred ecC
Confidence 753
No 384
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.14 E-value=0.01 Score=63.48 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCc---
Q 006466 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS--- 286 (644)
Q Consensus 210 ~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~--- 286 (644)
.-..+.+.|..++++.||+|+++++|++| ++ +. ..|.+.. .+..++||.||+|+|..|.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~--------------~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPD--------------GQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECC--------------CceEEecCEEEEcCCCcccccc
Confidence 34788999999999999999999999998 22 22 3566532 0246999999999998652
Q ss_pred ----chHHHHHHcCCCcccccCccccee
Q 006466 287 ----LSEKLIKNFKLREKSHAQHQTYAL 310 (644)
Q Consensus 287 ----l~~~l~~~~~~~~~~~~~~~~~~~ 310 (644)
-.-.+++++|+.. ....|....+
T Consensus 146 Gs~g~gy~la~~lGh~i-~~~~PaL~pl 172 (376)
T TIGR03862 146 GSDGAWQQVLDQRGVSV-APFAPANCGF 172 (376)
T ss_pred CCCcHHHHHHHHCCCcc-cCCcCeeceE
Confidence 1346778888886 3444444433
No 385
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.12 E-value=0.0045 Score=74.93 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=77.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-eEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
...|+|||+|+.|+.+|..|++. |. .|+|+|..+.+.
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~------G~~vV~vv~~~~~~~------------------------------------ 354 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAA------GIAVVAIIDARADVS------------------------------------ 354 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCceEEEEccCcchh------------------------------------
Confidence 35799999999999999999998 85 588998765321
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
..+.+.+++.||++++++.++++..+ +.+.+|++.. .+|+
T Consensus 355 ------------------------------~~l~~~L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~----~~g~---- 394 (985)
T TIGR01372 355 ------------------------------PEARAEARELGIEVLTGHVVAATEGG--KRVSGVAVAR----NGGA---- 394 (985)
T ss_pred ------------------------------HHHHHHHHHcCCEEEcCCeEEEEecC--CcEEEEEEEe----cCCc----
Confidence 11445667889999999999988643 4455666542 1122
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
+.++.+|.|+++.|..+. .+|....+..
T Consensus 395 ---~~~i~~D~V~va~G~~Pn--t~L~~~lg~~ 422 (985)
T TIGR01372 395 ---GQRLEADALAVSGGWTPV--VHLFSQRGGK 422 (985)
T ss_pred ---eEEEECCEEEEcCCcCch--hHHHHhcCCC
Confidence 468999999999999884 4566555543
No 386
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.12 E-value=0.018 Score=62.68 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEec
Q 006466 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 281 (644)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~ 281 (644)
++|.+.+-+.+.=.|..+..++.+.++..+++|++.+|... |++++|+.||+..
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~dp 285 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGDP 285 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEEG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEECC
Confidence 67888888877778999999999999999887988888763 6889999999643
No 387
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=97.10 E-value=0.00028 Score=66.59 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=47.1
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
....|++.|+.|. .|.++||.+++...++ + ...++.+.|+.|| .|...||++.|++.
T Consensus 107 ~~~id~~~Ci~Cg------~C~~aCp~~ai~~~~~--~--~~~i~~~~C~~Cg---~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 107 VALIDEDNCIGCT------KCIQACPVDAIVGAAK--A--MHTVIADECTGCD---LCVEPCPTDCIEMI 163 (165)
T ss_pred eEEEECCcCCChh------HHHHhCCccceEecCC--C--ceEeecccccChh---HHHHhcCcCceEee
Confidence 3445889999886 7999999998876433 1 3578999999999 99999999999986
No 388
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=97.10 E-value=0.00015 Score=65.68 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
|.+.|+.|. -|+.+||.+++...++. .+.|+...|+.|| .|...||+++|.+..
T Consensus 57 d~~~Ci~C~------~C~~~CP~~ai~~~~~~----~~~i~~~~C~~Cg---~Cv~vCP~~a~~l~~ 110 (133)
T PRK09625 57 NNEICINCF------NCWVYCPDAAILSRDKK----LKGVDYSHCKGCG---VCVEVCPTNPKSLLM 110 (133)
T ss_pred ehhHCcChh------hHHHhCCHhheEecCCc----eEEeCcCcCcChh---HHHHHCCcCceEEEe
Confidence 788899886 69999999987654321 4679999999999 999999999875543
No 389
>PLN00071 photosystem I subunit VII; Provisional
Probab=97.08 E-value=0.00019 Score=59.13 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=46.5
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCC-C-c-eeEEEecCCcccCCCCcceeeeCCCCCceeeCCCCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-N-Q-LKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPEGG 636 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~-~-~-~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~gg 636 (644)
+.+.|+.|. .|+.+||.+++++.+... . . ....++.+.|+.|+ .|...||.+.|++..=.|+
T Consensus 7 ~~~~C~~C~------~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg---~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 7 IYDTCIGCT------QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCK---RCESACPTDFLSVRVYLGH 71 (81)
T ss_pred cCCcCcChh------HHHHHCCccceeeecccccccccccCcCCCCcCcChh---hHHhhcCCccceEeeeecc
Confidence 567888886 799999999998754211 1 1 11245789999999 9999999999998765543
No 390
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.08 E-value=0.00025 Score=68.10 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=45.2
Q ss_pred CCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+..|..|. +.+|+.+||.+++...++ .+.+|.+.|+.|+ .|...||++.|.+.
T Consensus 55 ~~~C~~C~----~~~C~~~Cp~~ai~~~~~-----~v~i~~~~C~~C~---~C~~~CP~~ai~~~ 107 (181)
T PRK10330 55 ATVCRQCE----DAPCANVCPNGAISRDKG-----FVHVMQERCIGCK---TCVVACPYGAMEVV 107 (181)
T ss_pred CCcCcCcC----CcHHHHHcCcccEEccCC-----eEEeChhhCCCcc---hhhhhCCccCeEee
Confidence 46787777 778999999999976432 5789999999999 99999999999775
No 391
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=97.08 E-value=0.00023 Score=64.11 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=45.5
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
|++.|..|.-++ ...|+++||.+++.+.++. .....|+...|+.|+ .|...||+++|++.
T Consensus 6 ~~~~C~gC~~~~-~~~Cv~~CP~~ai~~~~~~--~~~~~id~~~C~~Cg---~Cv~~CP~~AI~~~ 65 (132)
T TIGR02060 6 YPTKCDGCKAGE-KTACVYICPNDLMHLDTEI--MKAYNIEPDMCWECY---SCVKACPQGAIDVR 65 (132)
T ss_pred ccccccCccCCc-hhcCHhhcCccceEecCCC--ceeeecCchhCccHH---HHHHhCCcCceEEE
Confidence 678888874111 1279999999999875431 124578999999999 99999999999664
No 392
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.07 E-value=0.0054 Score=69.69 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCCCcchHH
Q 006466 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (644)
Q Consensus 211 r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~~~ 290 (644)
...+.+.|.+++++.||+|+.++.+++++.+ +|+|+||...+ .++|+. ..|.|+.||+|||+.+.+-
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~---~~~g~~-------~~i~AkaVILATGG~~~~~-- 184 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYC---LETGEI-------HRFRAKAVVLATGGYGRIY-- 184 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEE---cCCCcE-------EEEEeCeEEECCCCccccC--
Confidence 3578899999999999999999999999976 58899987643 123332 5789999999999998632
Q ss_pred HHHHcCCCcccccCcccceeEEEEEEeecCC
Q 006466 291 LIKNFKLREKSHAQHQTYALGIKEVWEIDEG 321 (644)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (644)
... ...+...|.|+.+.+.....
T Consensus 185 -----~~~---~~~~~~tGdG~~mA~~aGA~ 207 (565)
T TIGR01816 185 -----FST---TNAHTLTGDGTGMVTRAGLP 207 (565)
T ss_pred -----CCc---CCCCCCccHHHHHHHHcCCc
Confidence 111 23344566666655554443
No 393
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=97.04 E-value=0.00049 Score=65.97 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=43.3
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEec--CC----CCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVP--DE----KNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~--~~----~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.+.|+.|. .|+.+||.++..+.. +. .....+.+|...|+.|| .|...||+++|+++
T Consensus 60 ~~~kCi~Cg------~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg---~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 60 EFDKCIACE------VCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCG---NCVEYCPTNCLSMT 122 (183)
T ss_pred CcccCcCcC------ChhhhCCCCcccccccccccccccccceeecCcccccCcC---chhhhcCCCCeecc
Confidence 567798887 699999999753211 10 01125789999999999 99999999999874
No 394
>PRK06273 ferredoxin; Provisional
Probab=97.04 E-value=0.00019 Score=67.22 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=45.0
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCC--------ceeEEEecCCcccCCCCcceeeeCCCCCcee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKN--------QLKLQINAQNCLHCKDFQACDIKDPKQNIKW 630 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~--------~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w 630 (644)
+.+.|..|. .|...||.+++.+...+.. ...+.||.+.|+.|+ .|...||.++|..
T Consensus 47 d~~~CigCg------~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg---~C~~aCP~~AI~~ 110 (165)
T PRK06273 47 FEELCIGCG------GCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCL---YCHDFCPVFALFN 110 (165)
T ss_pred CchhCcChh------HHHHhcCccceeeecccccchhcccccccceecccccCcCCC---CcchhCCHhheec
Confidence 778899886 7999999999987643210 124789999999999 9999999999844
No 395
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.00 E-value=0.00026 Score=58.25 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=45.2
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCC---CceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~---~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
...+.|+.|. .|..+||.+++...+... +.....++.+.|+.|+ .|...||.+.|.+++=
T Consensus 6 ~~~~~Ci~C~------~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg---~C~~~CP~~ai~~~~~ 68 (81)
T PRK02651 6 KIYDTCIGCT------QCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCK---RCETACPTDFLSIRVY 68 (81)
T ss_pred cccccCCCcc------hHHHHCCccceecccccccccCcccccCCCCcCCChh---hhhhhcCCCceEEEEE
Confidence 3467888886 699999999987643211 1112456889999999 9999999999987653
No 396
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.95 E-value=0.0095 Score=63.17 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=71.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc---ccccCccChHHHHHHhhhhhhcCCCeeeecc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH---IISGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~---~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (644)
....|+|||||.++...+..|.+. .+..+|.++=|++..-.. ...-..+.|..++.+...=..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~---------- 254 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDE---------- 254 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HH----------
T ss_pred CCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHH----------
Confidence 457899999999999999999998 223589999988754211 111234555544322110000
Q ss_pred CCcEEEeccCCccccCCCCCCCCcEEEcHHHH---HHHHHHH-HH-hcCCEEecCceEEEEEEcCCCcEEEEEeCcCccc
Q 006466 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQL---VRWLGGK-AE-ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (644)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l---~~~L~~~-a~-~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~ 257 (644)
....++...... + .-.|+...+ -+.|+++ +. +..+.|+.++.|+++..+++|.+ .+.+.+.
T Consensus 255 -~R~~~l~~~~~~-------n--y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~--- 320 (341)
T PF13434_consen 255 -ERRELLREQRHT-------N--YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHR--- 320 (341)
T ss_dssp -HHHHHHHHTGGG-------T--SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEET---
T ss_pred -HHHHHHHHhHhh-------c--CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEEC---
Confidence 000000000000 0 111222222 2223322 22 22389999999999999886544 3555441
Q ss_pred cCCCcccccccceEEEcCEEEEecCC
Q 006466 258 KDGSKKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 258 ~~G~~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
..|+ ..++.+|.||+|||-
T Consensus 321 ~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 321 QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp TT---------EEEEEESEEEE---E
T ss_pred CCCC-------eEEEecCEEEEcCCc
Confidence 1222 367999999999994
No 397
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.94 E-value=0.00068 Score=76.42 Aligned_cols=37 Identities=51% Similarity=0.701 Sum_probs=33.9
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
+.+++|+||||+|.+|.++|..|+.. |++|+|||++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~------g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA------GLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC------CCeEEEEeCCC
Confidence 44679999999999999999999976 99999999985
No 398
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.90 E-value=0.0051 Score=64.83 Aligned_cols=130 Identities=21% Similarity=0.339 Sum_probs=80.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhc--------CCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeee
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREK--------NVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~--------~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (644)
...|||||||.|...|..|+....+. ...++|+++|..+.+- +.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------~mF--------- 271 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------NMF--------- 271 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------HHH---------
Confidence 47999999999999999998643221 1257888888776321 111
Q ss_pred eccCCcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccC
Q 006466 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (644)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~ 259 (644)
-..+.++-.++..+.|+++..++.|.++.... +.+.. +|
T Consensus 272 -------------------------------dkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~----~~ 310 (491)
T KOG2495|consen 272 -------------------------------DKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKT----KD 310 (491)
T ss_pred -------------------------------HHHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEc----CC
Confidence 12334455556667899999999998875322 33332 34
Q ss_pred CCcccccccceEEEcCEEEEecCCCCc-chHHHHHHcCCCcccccCcccceeEEEEEEeec
Q 006466 260 GSKKENFQRGVELRGRITLLAEGCRGS-LSEKLIKNFKLREKSHAQHQTYALGIKEVWEID 319 (644)
Q Consensus 260 G~~~~~~~~g~~i~a~~vV~A~G~~s~-l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (644)
|+. .+|..-.+|.|+|..+. +.+.|.++.+-. ...++++.+..++.
T Consensus 311 g~~-------~~iPYG~lVWatG~~~rp~~k~lm~~i~e~-------~rr~L~vDE~LrV~ 357 (491)
T KOG2495|consen 311 GEI-------EEIPYGLLVWATGNGPRPVIKDLMKQIDEQ-------GRRGLAVDEWLRVK 357 (491)
T ss_pred Cce-------eeecceEEEecCCCCCchhhhhHhhcCCcc-------Cceeeeeeceeecc
Confidence 553 67899999999997642 334442222111 13466666655554
No 399
>PRK09898 hypothetical protein; Provisional
Probab=96.90 E-value=0.00082 Score=65.99 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=46.7
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
++..|..|. ..+|+.+||.+++...++ .+ .+.+|.+.|+.|+ .|...||++.|...
T Consensus 119 ~~~~C~~C~----~~~C~~~CP~gAi~~~~~-~g--~v~vd~~~CigC~---~C~~aCP~~ai~~~ 174 (208)
T PRK09898 119 TADTCRQCK----EPQCMNVCPIGAITWQQK-EG--CITVDHKRCIGCS---ACTTACPWMMATVN 174 (208)
T ss_pred eCccCCCcc----CcchhhhCCcceEEeecc-CC--eEEeccccCCCcC---cccccCCCCCCEec
Confidence 567898886 668999999999876543 22 6889999999999 99999999998765
No 400
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=96.89 E-value=0.00059 Score=64.19 Aligned_cols=59 Identities=10% Similarity=0.221 Sum_probs=47.7
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPE 634 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~ 634 (644)
.+..|..|. ..+|..+||.+++....+ ++ .+.|+++.|+.|+ .|...||++.|.|....
T Consensus 60 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-~~--~~~i~~~~C~~C~---~C~~aCP~~ai~~~~~~ 118 (161)
T TIGR02951 60 ISISCNHCA----DPACVKNCPTGAMYKREE-DG--LVLVDQDKCIGCR---YCVWACPYGAPQYDPQQ 118 (161)
T ss_pred cCccCCCcC----CcchHHhCCCCCEEeecC-CC--cEEECHHhCCCch---HHHhhCCCCCcEEcCCC
Confidence 357788887 668999999999865311 22 6889999999999 99999999999997543
No 401
>PLN02976 amine oxidase
Probab=96.88 E-value=0.001 Score=80.09 Aligned_cols=41 Identities=39% Similarity=0.680 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
..+||+|||||++|+++|+.|++. |++|+|||+++.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~------G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ------GFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC------CCcEEEEeeccCCCCce
Confidence 358999999999999999999999 99999999998888764
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.87 E-value=0.00063 Score=71.94 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=47.6
Q ss_pred CcEEecCCCCccccCCCCCCCCcceeeCC-----eeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCce-eeCC
Q 006466 560 AHLRLRDPKIPELVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIK-WTVP 633 (644)
Q Consensus 560 ~h~~~~~~~~~~~~~~~~~~~~~~~~cpa-----~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~-w~~p 633 (644)
.||-|.|.+.|.--.| ..-|.+|||- .|+++.++ ++ +..|..+-|+.|| .|.-|||+++|. -+.|
T Consensus 3 ~riAvvd~D~C~PkkC---~~eC~~yCP~vrtg~~~I~i~~~-~g--kpvIsE~lCiGCG---ICvkkCPF~AI~IvnLP 73 (591)
T COG1245 3 MRIAVVDYDRCQPKKC---GYECIKYCPVVRTGKETIEIDED-TG--KPVISEELCIGCG---ICVKKCPFDAISIVNLP 73 (591)
T ss_pred ceEEEeehhccCcccc---chhhhhcCCCccCCCeeEEecCC-CC--CceeEhhhhccch---hhhccCCcceEEEecCc
Confidence 3566777777764211 2479999994 56776544 34 4599999999999 999999999995 3444
Q ss_pred C
Q 006466 634 E 634 (644)
Q Consensus 634 ~ 634 (644)
+
T Consensus 74 ~ 74 (591)
T COG1245 74 E 74 (591)
T ss_pred h
Confidence 3
No 403
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=96.86 E-value=0.00054 Score=61.23 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=42.9
Q ss_pred CCCccccCCCCCCCCcceeeCCeeEEEecCC--CCc---eeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~--~~~---~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
.+.|+.|. .|+.+||.+++.+.... ++. ..+.++...|+.|| .|...||.+.|+++
T Consensus 42 ~~~Ci~C~------~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 42 EEKCIGCT------LCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCG---LCEEACPTDAIVLT 102 (122)
T ss_pred cCcCcCcc------hhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCC---chhhhCCCcccccc
Confidence 37788876 69999998888764321 111 24678999999999 99999999988654
No 404
>PRK07118 ferredoxin; Validated
Probab=96.85 E-value=0.0006 Score=69.82 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=47.0
Q ss_pred CCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCCCC
Q 006466 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPEG 635 (644)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~g 635 (644)
+..|+.|. .|+..||.+++.+.++ ...||++.|+.|| .|..+||++.|.|.-.+.
T Consensus 212 ~~~Ci~Cg------~Cv~~CP~~AI~~~~~-----~~vId~~~C~~Cg---~C~~~CP~~AI~~~~~~~ 266 (280)
T PRK07118 212 EVGCIGCG------KCVKACPAGAITMENN-----LAVIDQEKCTSCG---KCVEKCPTKAIRILNKPP 266 (280)
T ss_pred ccccccch------HHHhhCCcCcEEEeCC-----cEEEcCCcCCCHH---HHHHhCCccccEeecccc
Confidence 45677765 7999999999998654 6789999999999 999999999999985543
No 405
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.85 E-value=0.00044 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEecCCcccCCCCcceeeeCCCCCce
Q 006466 603 LQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 603 ~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
++||.+.|++|| .|...||+++|+
T Consensus 1 ~~id~~~C~~Cg---~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCG---RCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-T---HHHHHSTTSSEE
T ss_pred CEEchHHCCCcc---hhhhhcccccCC
Confidence 478999999999 999999999985
No 406
>PRK13984 putative oxidoreductase; Provisional
Probab=96.84 E-value=0.0089 Score=68.68 Aligned_cols=64 Identities=23% Similarity=0.420 Sum_probs=41.4
Q ss_pred HHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCc--cccCCCcccccc--cceEEEcCEEEEecCCCCc
Q 006466 222 AEELGVEIYPGFAASEILYDADNKVIGIGTNDMG--IAKDGSKKENFQ--RGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 222 a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g--~~~~G~~~~~~~--~g~~i~a~~vV~A~G~~s~ 286 (644)
+.+.||+++++..++++..+ ++.|.+|.+.++. .+.+|.....+. ++.++.+|.||.|.|..+.
T Consensus 472 ~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 472 GLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred HHHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 34579999999999888654 4677777664311 123343221111 1357999999999997753
No 407
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0087 Score=62.24 Aligned_cols=96 Identities=26% Similarity=0.340 Sum_probs=75.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..+|+|||||.+.+-.|+.|++. +.+|+++-|++.+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~------a~~Vtlv~r~~~~ra------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKI------AKKVTLVHRRDEFRA------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHh------cCeEEEEecCcccCc------------------------------------
Confidence 35999999999999999999999 889999999987653
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
..++.+++++. ++++++++.+.++.-++ |.+|++.+. + |+
T Consensus 181 ----------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~---~-~~---- 221 (305)
T COG0492 181 ----------------------------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNV---K-GE---- 221 (305)
T ss_pred ----------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEec---C-Cc----
Confidence 33466666666 79999999999987553 567777651 1 22
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGS 286 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (644)
...+..+-|..+-|..+.
T Consensus 222 ---~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 222 ---EKELPVDGVFIAIGHLPN 239 (305)
T ss_pred ---eEEEEeceEEEecCCCCc
Confidence 257889999999997664
No 408
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.80 E-value=0.007 Score=67.47 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=72.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCC-CeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
...|+|||||..|+.+|..+.+. | ..|+++|..+....... ..+.++.|.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~------ga~~V~vv~~~~~~~~~~~---------~~~~~~~~~-------------- 333 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRH------GAASVHQFEIMPKPPEARA---------KDNPWPEWP-------------- 333 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCEEEEEEecCCChhhcc---------cccCCCccc--------------
Confidence 35799999999999998888887 6 47999998764321000 000000000
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEE-ecCceEEEEEEcCCCcEEEEEeCcC--ccccCCCc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEI-YPGFAASEILYDADNKVIGIGTNDM--GIAKDGSK 262 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i-~~g~~v~~v~~~~~g~v~gV~~~d~--g~~~~G~~ 262 (644)
...++...+.+..+..|+++ ++++.++++..+++|.|.+|++..+ ..+.+|..
T Consensus 334 ------------------------~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~ 389 (485)
T TIGR01317 334 ------------------------RVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKW 389 (485)
T ss_pred ------------------------hhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCc
Confidence 00112223344444457654 5688888887665577878775322 11245542
Q ss_pred cccccc--ceEEEcCEEEEecCCC
Q 006466 263 KENFQR--GVELRGRITLLAEGCR 284 (644)
Q Consensus 263 ~~~~~~--g~~i~a~~vV~A~G~~ 284 (644)
.....+ ..++.+|.||.|.|..
T Consensus 390 ~p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 390 QFVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred cceecCCceEEEECCEEEEccCcC
Confidence 222212 2479999999999964
No 409
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.80 E-value=0.00069 Score=68.68 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=46.1
Q ss_pred CcEEecCCCCccccCCCCCCCCcceeeCCee-EEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 560 AHLRLRDPKIPELVNLPEYAGPESRYCPARV-YEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 560 ~h~~~~~~~~~~~~~~~~~~~~~~~~cpa~~-y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
-++...|++.|..|. .|.+.||.++ .+....+ ..+..+|...|+.|| .|...||+++|+++
T Consensus 193 ~~i~~~~~~~C~~C~------~C~~vCP~~~vl~~~~~~--~~~~~i~~~~C~~Cg---~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 193 IKIAASDREKCTNCM------DCFNVCPEPQVLRMPLKK--GGSTLVLSGDCTLCG---RCIDVCHEDVLGFT 254 (255)
T ss_pred eEEEeeccccCeEcC------CccCcCCCCceeeccccC--CCceEeccccccchh---HHHHhCCccccccc
Confidence 345555688899886 6999999885 4432211 115678889999999 99999999999886
No 410
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.78 E-value=0.041 Score=59.83 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=35.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (644)
.++=|||+|+|+|+||..|-|-+ +.||-+|.|+|+.+..|+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa--~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDA--KMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccC--CCCccceEEEeCCCCCCCc
Confidence 46789999999999999999863 3468999999999877664
No 411
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=96.74 E-value=0.00047 Score=71.87 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=46.5
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
.+..|..|. +.+|+.+||.+++...++ ++ .+.+|.+.|+.|+ .|...||++.|.+.+
T Consensus 108 ~~~~C~hC~----~p~Cv~aCP~gAi~k~~~-~g--~V~id~dkCigCg---~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 108 IKKQCMHCV----DPNCVSVCPVSALTKDPK-TG--IVHYDKDVCTGCR---YCMVACPFNVPKYDY 164 (328)
T ss_pred ccccCCCcC----chhhHhhCCCCCEEeccc-CC--cccCCHHHcCccc---HHHHhCCccceeccc
Confidence 356788886 678999999999986532 12 5789999999999 999999999997654
No 412
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.71 E-value=0.001 Score=77.04 Aligned_cols=56 Identities=25% Similarity=0.516 Sum_probs=47.8
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
.+..|..|. ..+|+.+||.+++....+ .+.||.+.|+.|+ .|...||++.|.|...
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-----~~~id~~~C~~C~---~C~~~CP~~ai~~~~~ 107 (654)
T PRK12769 52 SAVTCHHCE----DAPCARSCPNGAISHVDD-----SIQVNQQKCIGCK---SCVVACPFGTMQIVLT 107 (654)
T ss_pred CCccCCCCC----ChhHhhhCCccceeccCC-----eEEEecccccCcC---hhcccCCccCeeeccc
Confidence 467788887 678999999999976543 6889999999999 9999999999988743
No 413
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=96.70 E-value=0.00074 Score=73.41 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=44.5
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCcee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKW 630 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w 630 (644)
|++.|+.|. .|+..||.+++...+. ...++.+.|..|+ .|...||.+.|+.
T Consensus 8 d~~~Ci~C~------~C~~~CP~~ai~~~~~-----~~~i~~~~C~~C~---~C~~~CP~~AI~~ 58 (411)
T TIGR03224 8 DPEICIRCN------TCEETCPIDAITHDDR-----NYVVKADVCNGCM---ACVSPCPTGAIDN 58 (411)
T ss_pred CcccCcCcc------chhhhCCcccEeccCC-----ceEeCcccCcCHH---HHHhhcCccccee
Confidence 889999987 7999999999876433 5678999999999 9999999999974
No 414
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=96.62 E-value=0.00089 Score=57.63 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=42.1
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
+.+.|+.|. .|+.+||.+++....+ +...+.+++..|..|| .|...||.++|.
T Consensus 32 ~~~~C~~C~------~C~~~CP~~~i~~~~~--g~~~~~i~~~~C~~Cg---~C~~~CP~~Ai~ 84 (101)
T TIGR00402 32 FSAVCTRCG------ECASACENNILQLGQQ--GQPTVEFDNAECDFCG---KCAEACPTNAFH 84 (101)
T ss_pred CcCcCcChh------HHHHHcCcccceeccC--CceeeEecCccCcCcc---ChhhHCCccccC
Confidence 345677776 6999999999876432 2235789999999999 999999999985
No 415
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=96.60 E-value=0.00078 Score=64.98 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
....|++.|+.|. .|++.||.+++....+ + ...++.+.|+.|| .|...||++.|++.
T Consensus 108 ~~~id~~~Ci~Cg------~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg---~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 108 VAFIDEDNCIGCT------KCIQACPVDAIVGATK--A--MHTVISDLCTGCD---LCVAPCPTDCIEMI 164 (191)
T ss_pred eeEEeCCcCCCCC------hhhhhCCHhhhecccC--C--ceeecCCcCCchH---HHHHHcCcCceEEe
Confidence 3444889999987 6999999888765432 1 3568889999999 99999999999886
No 416
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.60 E-value=0.0064 Score=63.56 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEE-EEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVC-VVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~-viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
...|-|||.|..|..+|+.|++... +.|..|. |+|.....+ .++
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r--~~g~eV~QvF~Ek~nm~---------------kiL------------------ 391 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYR--NEGVEVHQVFEEKYNME---------------KIL------------------ 391 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhh--ccCcEEEEeecccCChh---------------hhh------------------
Confidence 3579999999999999999998732 1244443 333221111 111
Q ss_pred EEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccc
Q 006466 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (644)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~ 265 (644)
..-|.+|-.+..++.||.++.+..|.++.....+ + .+.++|
T Consensus 392 -------------------------Peyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l-~lkL~d------------ 432 (659)
T KOG1346|consen 392 -------------------------PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-L-VLKLSD------------ 432 (659)
T ss_pred -------------------------HHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-e-EEEecC------------
Confidence 2334677788888999999999999998877633 3 367776
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCc
Q 006466 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE 299 (644)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~~ 299 (644)
|++++.|+||.|.|..+ ...|++..++..
T Consensus 433 ---G~~l~tD~vVvavG~eP--N~ela~~sgLei 461 (659)
T KOG1346|consen 433 ---GSELRTDLVVVAVGEEP--NSELAEASGLEI 461 (659)
T ss_pred ---CCeeeeeeEEEEecCCC--chhhccccccee
Confidence 88999999999999987 456665566554
No 417
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=96.59 E-value=0.00057 Score=71.09 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=47.1
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
..|++.|+.|. .|+.+||.+++.+.....+.....++..+|..|| .|...||+++|.+.
T Consensus 44 ~~~~~~C~~C~------~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg---~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 44 LFKENRCLGCG------KCVEVCPAGTARLSELADGRNRIIIRREKCTHCG---KCTEACPSGALSIV 102 (295)
T ss_pred EEccccCCCCc------hhhhhCcccccccccccCCCcceeechhhcCchh---HhhccCcHhHHhhh
Confidence 34889999987 7999999999874322122236899999999999 99999999999774
No 418
>PRK13409 putative ATPase RIL; Provisional
Probab=96.57 E-value=0.0012 Score=75.02 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=45.8
Q ss_pred EEecCCCCccccCCCCCCCCcceeeC-----CeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCce-eeCCC
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCP-----ARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIK-WTVPE 634 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cp-----a~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~-w~~p~ 634 (644)
|-|.|.+.|.--.| ...|.+||| ..|+++.++. + +..|+.+-|+.|| -|.-|||+++|+ -+.|+
T Consensus 4 ~~~~~~~~c~~~~c---~~~c~~~cp~~~~~~~~~~~~~~~-~--~~~~~e~~c~~c~---~c~~~cp~~a~~i~~~p~ 73 (590)
T PRK13409 4 IAVVDYDRCQPKKC---NYECIKYCPVVRTGEETIEIDEDD-G--KPVISEELCIGCG---ICVKKCPFDAISIVNLPE 73 (590)
T ss_pred EEEeeccccCcchh---hhhHHhhCCCcccCCeEEEEcCCC-C--CceeeHhhccccc---cccccCCcceEEEeeCch
Confidence 44556666654211 347999999 4677775432 1 6899999999999 999999999995 34443
No 419
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=96.55 E-value=0.001 Score=69.98 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=39.0
Q ss_pred CCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 579 AGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 579 ~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
.++|+..||.+++++..+.. ..++.||.+.|++|| .|.-.||.+.|+
T Consensus 186 ~~~Cv~~CP~~Ai~~~~~~~-~~~~~id~~~Ci~Cg---~Ci~~CP~~a~~ 232 (341)
T TIGR02066 186 IPSVVAACPTGALKPRRDGK-NKSLEVDVEKCIYCG---NCYTMCPAMPIF 232 (341)
T ss_pred CCceEeeCchhhceecccCC-CCceeeccccCCcCC---chHHhCchhhcc
Confidence 56899999999999853321 227999999999999 999999987775
No 420
>PRK06991 ferredoxin; Provisional
Probab=96.52 E-value=0.0014 Score=66.53 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=45.0
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
.|.+.|+.|. .|+.+||.+++...++. ...|+...|+.|| .|...||.+.|...
T Consensus 82 id~~~CigCg------~Cv~aCP~~AI~~~~~~----~~~v~~~~CigCg---~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 82 IDEQLCIGCT------LCMQACPVDAIVGAPKQ----MHTVLADLCTGCD---LCVPPCPVDCIDMV 135 (270)
T ss_pred EccccCCCCc------HHHHhCCHhheeccccc----ceeeCHhhCCCch---HHHhhCCcCCeEee
Confidence 4788899987 79999999998765331 3568899999999 99999999999765
No 421
>PRK08764 ferredoxin; Provisional
Probab=96.50 E-value=0.0015 Score=59.43 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=43.8
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.+.+.+.|+.|. .|++.||.++++...+ + ...++...|+.|| .|...||++.|+++
T Consensus 79 ~~~~~~~~Ci~C~------~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg---~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 79 VAWIVEADCIGCT------KCIQACPVDAIVGGAK--H--MHTVIAPLCTGCE---LCVPACPVDCIELH 135 (135)
T ss_pred eEEECcccCcCcc------hHHHhCChhhcCccCC--C--ceeecCCcCcCcc---chhhhcCccceEeC
Confidence 3333446788876 6999999988875422 1 3568889999999 99999999999874
No 422
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.50 E-value=0.0012 Score=66.75 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=31.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
..++.|+|||||.+|++.|..+.+.. +.=+|.|+|..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchh
Confidence 34799999999999999999999873 345899999765
No 423
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=96.46 E-value=0.0012 Score=56.34 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=47.2
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCCC
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPE 634 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~ 634 (644)
.+.+.|+.|. .|..+||.+++++..+......+.|+...|+.|+ .|.-.||.++|++..-.
T Consensus 26 ~~~~~Ci~Cg------~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~---~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 26 IDAEKCIGCG------LCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCG---ACLKVCPVDALSIAEEL 86 (99)
T ss_pred eCccccCCCC------CchhhCCHHHhhcccccCccceEEEccccCcccc---chHhhCCcCCeehhhcc
Confidence 3566798876 7999999999887332100237899999999999 99999999998775443
No 424
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.44 E-value=0.00049 Score=42.29 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEecCCcccCCCCcceeeeCCCCCc
Q 006466 603 LQINAQNCLHCKDFQACDIKDPKQNI 628 (644)
Q Consensus 603 ~~~~~~~c~~c~~~~~c~~~~p~~~i 628 (644)
++||.++|+.|| .|...||.++|
T Consensus 2 ~~id~~~C~~Cg---~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCG---DCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChh---HHHHhcchhcC
Confidence 579999999999 99999998876
No 425
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=96.43 E-value=0.001 Score=66.53 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=43.3
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
|++.|..|. .|..+||.+++...++ ...+|...|..|+ .|...||.++|+
T Consensus 146 d~~~C~~C~------~C~~~CP~~ai~~~~~-----~~~i~~~~C~~Cg---~C~~~CP~~AI~ 195 (234)
T TIGR02700 146 DRKRCKGCG------ICVDACPRSAIDMVDG-----KAFIRLLKCVGCG---KCKEACPYNAIH 195 (234)
T ss_pred ChhHCcCcc------hHHHhCCcccEEecCC-----ceEEchhhCCccc---hHHhhCCCCcee
Confidence 667798876 6999999999987544 5689999999999 999999999985
No 426
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.013 Score=59.63 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g 149 (644)
..-|.|||||.||..||++++++ |++|.++|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~------Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR------GVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc------CCcEEEEEcccccC
Confidence 34689999999999999999999 99999999876543
No 427
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.34 E-value=0.002 Score=64.06 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=46.2
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
|++.|..|. -|.++|+-+++-+.++. .+.+|..-|-.|| +|.+.||..+|+-..
T Consensus 67 ~~e~C~~CG------~C~~vC~f~Ai~~~~~~----~~~~~~~lC~GCg---aC~~~CP~~AI~~~~ 120 (284)
T COG1149 67 DPEKCIRCG------KCAEVCRFGAIVVLPGG----KPVLNPDLCEGCG---ACSIVCPEPAIEEEP 120 (284)
T ss_pred ChhhccccC------cHHHhCCCCeEEEcCCC----ceecCcccccCcc---cceeeCCCccccccc
Confidence 566698887 79999999999876553 7999999999999 999999999887553
No 428
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=96.25 E-value=0.0014 Score=68.57 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=42.7
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEE--ecC--CCC----ceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEY--VPD--EKN----QLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~--~~~--~~~----~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
|.+.|+.|. -|..+||.+++.. ... ..+ ...+.+|+..|..|+ .|...||+++|++.
T Consensus 245 d~~~Ci~C~------~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg---~C~~~CP~~AI~~~ 309 (312)
T PRK14028 245 DHSKCIMCR------KCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCG---VCAEVCPTGAIQMV 309 (312)
T ss_pred CcccCcCcc------cccccCChhhhhcccccccCcccccccceeecCCcccCcCcC---chhhhCCHhheEec
Confidence 788999987 6999999887642 111 111 113457889999999 99999999999864
No 429
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=96.23 E-value=0.0014 Score=68.64 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=41.3
Q ss_pred CCCCccccCCCCCCCCcceeeCC---eeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 566 DPKIPELVNLPEYAGPESRYCPA---RVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa---~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
|.+.|+.|. .|+++||. +++.+.+. ++.+|.+.|+.|+ .|.-.||+++|.
T Consensus 167 d~~~C~~Cg------~C~~~Cp~~a~~ai~~~~~-----~~~id~~~C~~Cg---~Cv~~CP~~Al~ 219 (314)
T TIGR02912 167 DADRCIGCG------ACVKVCKKKAVGALSFENY-----KVVRDHSKCIGCG---ECVLKCPTGAWT 219 (314)
T ss_pred eCccCCcch------HHHHhcChhhcCceeccCC-----eEEeCCCcCcCcc---hhhhhCCHhhcc
Confidence 667798887 79999996 55555432 7889999999999 999999998774
No 430
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.20 E-value=0.0026 Score=65.16 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=43.5
Q ss_pred CcEEecCCCCccccCCCCCCCCcceeeCCeeEEE--ecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 560 AHLRLRDPKIPELVNLPEYAGPESRYCPARVYEY--VPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 560 ~h~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~--~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
-+++..|++.|..|. .|.+.||.+.... ..+++. ...+|...|+.|+ .|...||+++|++.
T Consensus 200 ~~i~~~d~~~C~~C~------~C~~~CP~~~i~~~~~~~~~~--~~~i~~~~C~~Cg---~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 200 IRVKAHDRQKCTRCM------DCFHVCPEPQVLRPPLKGKQS--PSQVTSGDCITCG---RCIDVCSEDVFNFT 262 (271)
T ss_pred cccccCCcccCcccC------CcCCcCCCcceecccccCCCc--cceeCcccCcChh---HHHhhcCccceeec
Confidence 334434788899886 6999999875321 111111 2357888999999 99999999999865
No 431
>PRK10194 ferredoxin-type protein; Provisional
Probab=96.20 E-value=0.003 Score=59.46 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=38.9
Q ss_pred CCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 580 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 580 ~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
.-|..+||.+++++..+..+.....||.+.|+.|| .|...||+++|+-+..
T Consensus 110 ~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg---~C~~~CP~~AI~~~~~ 160 (163)
T PRK10194 110 RRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCG---ACAASCPVSAITAEYL 160 (163)
T ss_pred CcchhhCCHhHeEeeecCCCcccceeCcccCcCcc---hhhhhCCccceEeccc
Confidence 46889999999887643222223578999999999 9999999999976543
No 432
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.20 E-value=0.021 Score=61.27 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=36.1
Q ss_pred HhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 223 EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 223 ~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
++.|+++++++.|+.+...++ .|.+.+ |+.+..+.+|+|||+.
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K----~l~~~~---------------Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASK----TLVLGN---------------GETLKYSKLIIATGSS 180 (478)
T ss_pred hhcCceEEEcceeEEeecccc----EEEeCC---------------CceeecceEEEeecCc
Confidence 568999999999999988763 366655 7899999999999983
No 433
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.014 Score=59.80 Aligned_cols=76 Identities=30% Similarity=0.392 Sum_probs=61.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
..||.|||||-+|+.||+-|+-. =..|+|+|=.+++.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi------v~hVtllEF~~eLkA------------------------------------ 391 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI------VEHVTLLEFAPELKA------------------------------------ 391 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh------hheeeeeecchhhhh------------------------------------
Confidence 57999999999999999999987 668999998776543
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTND 253 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d 253 (644)
.+.|.+++... +|+|+.+...++|.-++ .+|.|+...|
T Consensus 392 ----------------------------D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~d 430 (520)
T COG3634 392 ----------------------------DAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRD 430 (520)
T ss_pred ----------------------------HHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEe
Confidence 45577777765 59999999999987665 4677887766
No 434
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=96.10 E-value=0.0028 Score=66.97 Aligned_cols=53 Identities=21% Similarity=0.422 Sum_probs=43.4
Q ss_pred cCCCCccccCCCCCCCCc--ceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCCC
Q 006466 565 RDPKIPELVNLPEYAGPE--SRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPE 634 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~--~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~ 634 (644)
.+++.|..|. .| +..||.+++.. + ..||...|++|+ .|...||+++|+++.++
T Consensus 299 id~dkCi~Cg------~C~~~~aCPt~AI~~--~------~~Id~~~Ci~CG---aCV~aCP~~AI~~~~~~ 353 (391)
T TIGR03287 299 YNPERCENCD------PCLVEEACPVPAIKK--D------GTLNTEDCFGCG---YCAEICPGGAFEVNLGS 353 (391)
T ss_pred EchhhCcCCC------CCcCCcCCCHhhEec--c------ceeChHhCcChH---HHHhhCCccceEEeCCe
Confidence 3778898886 57 48999999862 2 258899999999 99999999999987553
No 435
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.016 Score=64.60 Aligned_cols=33 Identities=39% Similarity=0.572 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
..|+|||+|++|+++|..|+++ |.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4699999999999999999998 99999999764
No 436
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.10 E-value=0.0048 Score=68.55 Aligned_cols=38 Identities=37% Similarity=0.593 Sum_probs=34.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCC
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~ 148 (644)
..||.||||||-||+.+|.+|++. |..+|+|||++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 479999999999999999999996 68999999998654
No 437
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.03 E-value=0.033 Score=65.63 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=47.9
Q ss_pred HHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCcc---ccCCC------------cccccccceEEEcCEEEEecCC
Q 006466 219 GGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI---AKDGS------------KKENFQRGVELRGRITLLAEGC 283 (644)
Q Consensus 219 ~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~---~~~G~------------~~~~~~~g~~i~a~~vV~A~G~ 283 (644)
.+.|.+.||++.++....+++.+++|.+.+|++..+.. +..|. +.....+..+|.||.||.|.|.
T Consensus 647 v~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 647 LIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 44567789999999999999888778999988875431 01111 2222334578999999999996
Q ss_pred CC
Q 006466 284 RG 285 (644)
Q Consensus 284 ~s 285 (644)
..
T Consensus 727 ~~ 728 (1028)
T PRK06567 727 EN 728 (1028)
T ss_pred CC
Confidence 54
No 438
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=96.02 E-value=0.0022 Score=60.64 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=41.6
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecC----CC-C-ceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPD----EK-N-QLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~----~~-~-~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.+.|+.|. .|+.+||.++...... .. . ...+.+|...|+.|| .|...||.++|..+
T Consensus 57 ~~~~Ci~Cg------~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg---~C~~~CP~~AI~~~ 119 (167)
T CHL00014 57 EFDKCIACE------VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCG---NCVEYCPTNCLSMT 119 (167)
T ss_pred ccccCCCcC------cHHHhCCCCCccccccccccccccccccccCCCCcCcCcc---chHhhcCcCceecC
Confidence 456798887 6999999986532111 00 1 014678999999999 99999999999653
No 439
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=95.95 E-value=0.0064 Score=59.79 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=46.0
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCC----CCceeEEEecCCcc-----cCCCCcceeeeCCC--CCceeeCCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE----KNQLKLQINAQNCL-----HCKDFQACDIKDPK--QNIKWTVPE 634 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~----~~~~~~~~~~~~c~-----~c~~~~~c~~~~p~--~~i~w~~p~ 634 (644)
+...|..|. +-+|..+||.++++....+ ..+..++||.++|+ .|+ .|.-.||+ ++|++....
T Consensus 89 ~~~~C~~C~----d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~---~C~~~CP~~~~AI~~~~~~ 161 (213)
T TIGR00397 89 REVPCRMCK----DIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCS---ICVRVCPIRGEAISLKPIE 161 (213)
T ss_pred cCCcCCCCC----CchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcc---cchhhCCCCcceEEEeccc
Confidence 345688876 5589999999998743211 11224679999999 999 99999998 689887643
No 440
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=95.83 E-value=0.0023 Score=68.73 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=43.4
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEe--cCCCCc-------eeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYV--PDEKNQ-------LKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~--~~~~~~-------~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
|++.|+.|. .|.++||.++.... ....+. ....||.+.|+.|| .|...||+++|.+.
T Consensus 5 d~~kCi~Cg------~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg---~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 5 DMSKCIGCG------RCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCG---QCSLVCPVGAITEK 70 (374)
T ss_pred chhhCCcCh------HhhhhCCHhhccccccccccCCccccccccccccCcccCcCcc---CHHHhCCCChhhhh
Confidence 778899887 79999999887621 111111 12458999999999 99999999999775
No 441
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.83 E-value=0.0026 Score=37.81 Aligned_cols=20 Identities=30% Similarity=0.903 Sum_probs=18.5
Q ss_pred eEEEecCCcccCCCCcceeeeCC
Q 006466 602 KLQINAQNCLHCKDFQACDIKDP 624 (644)
Q Consensus 602 ~~~~~~~~c~~c~~~~~c~~~~p 624 (644)
.+.||.+.|+.|+ +|...||
T Consensus 2 ~~~iD~~rCiGC~---~C~~AC~ 21 (22)
T PF12797_consen 2 GMVIDLERCIGCG---ACEVACP 21 (22)
T ss_pred ceEEccccccCch---hHHHhhC
Confidence 3789999999999 9999998
No 442
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=95.73 E-value=0.0024 Score=63.44 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=42.9
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCc
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNI 628 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i 628 (644)
.|.+.|..|. .|...||.++++..++ +..+|...|..|+ +|...||+++|
T Consensus 171 id~~~C~~C~------~C~~aCP~~ai~~~~~-----~~~i~~~~C~~C~---~C~~~CP~~~~ 220 (228)
T TIGR03294 171 VNQGLCMGCG------TCAAACPTRAIEMEDG-----RPNVNRDRCIKCG---ACYVQCPRAFW 220 (228)
T ss_pred EChhhCcChh------HHHHhCCHhhEEEeCC-----cEEEChhhccCHH---HHHHHcCCCCc
Confidence 3678898876 7999999999987644 5679999999999 99999998877
No 443
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.72 E-value=0.0074 Score=66.01 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=45.4
Q ss_pred CCCCccccCCCCCCCCcceeeCCe---eEEEecCCCCceeEEEecCCcccCCCCcceeeeCCC-CCceeeCCCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPAR---VYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPK-QNIKWTVPEG 635 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~---~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~-~~i~w~~p~g 635 (644)
|++.|..|. .|..+||.+ ++.+.++ +...+.|+...|+.|+ .|...||. ++|+...-.-
T Consensus 340 ~~~~C~~C~------~C~~~Cp~~~~~ai~~~~~--~~~~~~i~~~~C~~Cg---~C~~~CP~~~Ai~~~~~~~ 402 (420)
T PRK08318 340 DQDKCIGCG------RCYIACEDTSHQAIEWDED--GTRTPEVIEEECVGCN---LCAHVCPVEGCITMGEVKF 402 (420)
T ss_pred CHHHCCCCC------cccccCCCcchhheeeccC--CCceEEechhhCcccc---hHHhhCCCCCCEEEeccCC
Confidence 778898887 799999975 3444332 2225789999999999 99999999 8997766443
No 444
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=95.68 E-value=0.0038 Score=63.68 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=44.8
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
+.+ .+.|..|. .|...||.+++.+.++. ....+...|..|+ .|...||.++|+++.-
T Consensus 165 I~i--~~~C~~C~------~C~~~CP~~vi~~~~~~----~~v~~~~~C~~C~---~Ci~~CP~~AI~i~~~ 221 (263)
T PRK00783 165 IEV--SEDCDECE------KCVEACPRGVLELKEGK----LVVTDLLNCSLCK---LCERACPGKAIRVSDD 221 (263)
T ss_pred ccc--cccCCchH------HHHHhCCccccEecCCe----EEEeChhhCCCch---HHHHhCCCCceEEEEc
Confidence 445 35677765 69999999999986531 3455888999999 9999999999987653
No 445
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.56 E-value=0.01 Score=58.55 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=30.3
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCC
Q 006466 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (644)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~ 148 (644)
.+|||||+||.++|-.|+++ .|..+|+++-.++.+
T Consensus 2 fivvgggiagvscaeqla~~----~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQL----EPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhh----CCCCcEEEEeccHHH
Confidence 58999999999999999998 467899999877654
No 446
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.56 E-value=1.4 Score=47.61 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccceEEEcCEEEEecCCC
Q 006466 215 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (644)
Q Consensus 215 ~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g~~i~a~~vV~A~G~~ 284 (644)
.+.|.+.+++.|++|+++++|++|..++++ +..+...+ |.++.||.||.|.-..
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~---------------g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSG---------------GETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecC---------------CccccCCEEEEcCCHH
Confidence 455777787889999999999999988754 32222222 4568999999987644
No 447
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.54 E-value=0.057 Score=58.38 Aligned_cols=108 Identities=25% Similarity=0.254 Sum_probs=65.7
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEEEe
Q 006466 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (644)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (644)
++|||+|++|+++|..|.+. .++.+++++.+........ ++. . ..+ .
T Consensus 1 ivivG~g~aG~~aa~~l~~~----~~~~~i~i~~~~~~~~~~~-~~~--~-~~~-------------------------~ 47 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRL----LLAAEITLIGREPKYSYYR-CPL--S-LYV-------------------------G 47 (415)
T ss_pred CEEECCcHHHHHHHHHHHhc----CCCCCEEEEeCCCCCCCCC-Ccc--c-hHH-------------------------h
Confidence 58999999999999998886 3477888777765433210 000 0 000 0
Q ss_pred ccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccccc
Q 006466 190 TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG 269 (644)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~~g 269 (644)
.... ....+....... .+.+++++.+++|+++.... + .|.+.+ |
T Consensus 48 ~~~~----------------~~~~~~~~~~~~-~~~~i~~~~~~~v~~id~~~--~--~v~~~~---------------g 91 (415)
T COG0446 48 GGIA----------------SLEDLRYPPRFN-RATGIDVRTGTEVTSIDPEN--K--VVLLDD---------------G 91 (415)
T ss_pred cccC----------------CHHHhcccchhH-HhhCCEEeeCCEEEEecCCC--C--EEEECC---------------C
Confidence 0000 000000000011 45679999999999987654 2 266655 4
Q ss_pred eEEEcCEEEEecCCCCcc
Q 006466 270 VELRGRITLLAEGCRGSL 287 (644)
Q Consensus 270 ~~i~a~~vV~A~G~~s~l 287 (644)
++..|.+|+|+|++...
T Consensus 92 -~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 92 -EIEYDYLVLATGARPRP 108 (415)
T ss_pred -cccccEEEEcCCCcccC
Confidence 78999999999988753
No 448
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.50 E-value=0.0066 Score=74.03 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=44.0
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEec---CC------------------CC-ceeEEEecCCcccCCCCcceee
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVP---DE------------------KN-QLKLQINAQNCLHCKDFQACDI 621 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~---~~------------------~~-~~~~~~~~~~c~~c~~~~~c~~ 621 (644)
..|++.|+.|. .|+.+||.+++.... .+ .+ ..+++++.+.|+.|| .|..
T Consensus 679 ~~~~~~Ci~Cg------~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg---~Cv~ 749 (1165)
T TIGR02176 679 VWVPDNCIQCN------QCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCG---NCVD 749 (1165)
T ss_pred eeccccCCCcc------chHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCcc---chhh
Confidence 34778899987 799999999886420 00 00 124789999999999 9999
Q ss_pred eCCCC--Cceee
Q 006466 622 KDPKQ--NIKWT 631 (644)
Q Consensus 622 ~~p~~--~i~w~ 631 (644)
.||.+ +|.+.
T Consensus 750 ~CP~~~~Al~m~ 761 (1165)
T TIGR02176 750 ICPAKEKALVMQ 761 (1165)
T ss_pred hcCCCCcccccc
Confidence 99985 66654
No 449
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.49 E-value=0.024 Score=62.70 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
..+|+|||+|.+|+-.|..|++. +.+|+++.|+.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~------a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV------AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh------CCeEEEEEeec
Confidence 45799999999999999999999 89999999865
No 450
>PRK13795 hypothetical protein; Provisional
Probab=95.46 E-value=0.0054 Score=70.32 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=44.6
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
+.+.+.|..|. -|+..||.++....++ .+.+.+|.+.|++|+ .|...||...|.
T Consensus 577 v~~~~~C~~Cg------~C~~~CP~~ai~~~~~---~~~~~id~~~C~~Cg---~C~~aCP~~a~~ 630 (636)
T PRK13795 577 LRRAAECVGCG------VCVGACPTGAIRIEEG---KRKISVDEEKCIHCG---KCTEVCPVVKYK 630 (636)
T ss_pred EEccccCCCHh------HHHHhCCcccEEeecC---CceEEechhhcCChh---HHHhhcCCCeeE
Confidence 45788898886 6999999999887543 125889999999999 999999988774
No 451
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=95.41 E-value=0.0057 Score=62.23 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=44.1
Q ss_pred CCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCCCC
Q 006466 568 KIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVPEG 635 (644)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p~g 635 (644)
+.|..|. .|...||.+++++.++ ....+|.+.|.-|+ .|...||+++|+.+..++
T Consensus 169 ~~C~~C~------~C~~~CP~~vi~~d~~----~~~v~~~~~C~~C~---~C~~~Cp~~AI~~~~~~~ 223 (259)
T cd07030 169 EDCDGCG------KCVEECPRGVLELEEG----KVVVEDLEDCSLCK---LCERACDAGAIRVGWDED 223 (259)
T ss_pred hhCCChH------HHHHhCCccceEccCC----eeEEeChhhCcCch---HHHHhCCCCcEEEEecCC
Confidence 4566665 6999999999997543 14567899999999 999999999998775544
No 452
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=95.38 E-value=0.0043 Score=63.04 Aligned_cols=45 Identities=22% Similarity=0.484 Sum_probs=40.7
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDP 624 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p 624 (644)
|++.|..|. .|+.+||.+++.|... ++.+++++|+-|| -|.-+||
T Consensus 170 ~~E~c~gc~------~cv~~C~~gAI~~~~~-----~l~id~~~Ci~Cg---~Ci~~Cp 214 (317)
T COG2221 170 DEELCRGCG------KCVKVCPTGAITWDGK-----KLKIDGSKCIGCG---KCIRACP 214 (317)
T ss_pred CHHHhchhH------hHHHhCCCCceeeccc-----eEEEehhhccCcc---HHhhhCC
Confidence 678888775 7999999999999753 8999999999999 9999999
No 453
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=95.36 E-value=0.0055 Score=61.42 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=43.5
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCc--eee
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNI--KWT 631 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i--~w~ 631 (644)
+...|..|. -|+..||.++++.. + ..+|+++.|+.|+ -|...||++.+ .|.
T Consensus 191 ~e~kc~~c~------~cv~~cp~~Ai~~~-~-----~~~I~~~~ci~c~---~c~~ac~~gav~~~W~ 243 (354)
T COG2768 191 VEEKCYDCG------LCVKICPVGAITLT-K-----VVKIDYEKCIGCG---QCMEACPYGAVDQNWE 243 (354)
T ss_pred eeecccccc------hhhhhCCCcceecc-c-----ceeechhhccchh---hhhhhccCcccccchh
Confidence 345688876 69999999999865 2 5899999999999 99999999988 575
No 454
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=95.35 E-value=0.011 Score=59.85 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=44.8
Q ss_pred CCccccCCCCCCCCcceeeCCeeEEEecCCC----CceeEEEecCCcc-----cCCCCcceeeeCCC--CCceeeC
Q 006466 568 KIPELVNLPEYAGPESRYCPARVYEYVPDEK----NQLKLQINAQNCL-----HCKDFQACDIKDPK--QNIKWTV 632 (644)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~----~~~~~~~~~~~c~-----~c~~~~~c~~~~p~--~~i~w~~ 632 (644)
..|..|. +.+|+.+||.+++++...+- .+..+.||.++|+ .|+ .|...||. ++|+|..
T Consensus 97 ~~C~~C~----~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~---~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 97 IPCEMCE----DIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCD---VCYRVCPLIDKAITLEL 165 (254)
T ss_pred CcCcCCC----CCchhhccCccceEeecccccccccCceeecchhhccccCCCchH---HHhhhCCCccCeEEEEc
Confidence 4587775 55899999999998753211 1224569999999 899 99999996 7999875
No 455
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.26 E-value=0.25 Score=54.91 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHh---------cCCEEecCceEEEEEEc--CCCcEEEEEeCcCcccc---CCCccccc-ccceEEEcCE
Q 006466 212 SQLVRWLGGKAEE---------LGVEIYPGFAASEILYD--ADNKVIGIGTNDMGIAK---DGSKKENF-QRGVELRGRI 276 (644)
Q Consensus 212 ~~l~~~L~~~a~~---------~Gv~i~~g~~v~~v~~~--~~g~v~gV~~~d~g~~~---~G~~~~~~-~~g~~i~a~~ 276 (644)
....+.|.+.+.+ .++.+++....++|..+ ++|+|.+|++..+.... +|.....- ....++.+|.
T Consensus 266 ~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~ 345 (491)
T PLN02852 266 RRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGL 345 (491)
T ss_pred HHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCE
Confidence 3356666665533 46899999999999743 33688888876433211 23221100 1124689999
Q ss_pred EEEecCCCC
Q 006466 277 TLLAEGCRG 285 (644)
Q Consensus 277 vV~A~G~~s 285 (644)
||.|-|..+
T Consensus 346 Vi~aIG~~~ 354 (491)
T PLN02852 346 VLKSIGYKS 354 (491)
T ss_pred EEEeecCCC
Confidence 999999654
No 456
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.17 E-value=0.06 Score=56.56 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=78.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (644)
.+...+|||+|.+..+++...+.. .++.+|.+|--.+++...- +--...
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~----da~A~vl~iseepelPYmR---------------------------PPLSKE 225 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSN----DATAKVLMISEEPELPYMR---------------------------PPLSKE 225 (659)
T ss_pred ccCceeEEcCCchhhhcccccccC----CCCceEEeeccCccCcccC---------------------------CCcchh
Confidence 356789999998877665544433 3488898887666543210 000111
Q ss_pred EEEeccCC---ccccC-------CCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCc
Q 006466 186 FWFLTKDR---AFSLP-------SPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (644)
Q Consensus 186 ~~~~~~~~---~~~~~-------~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g 255 (644)
+||..+.. .+.+. ..+.....|.|+..+|... ..-||-+..|.+|+.|...++ -|+++|
T Consensus 226 LW~~~dpn~~k~lrfkqwsGkeRsiffepd~FfvspeDLp~~-----~nGGvAvl~G~kvvkid~~d~----~V~LnD-- 294 (659)
T KOG1346|consen 226 LWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFVSPEDLPKA-----VNGGVAVLRGRKVVKIDEEDK----KVILND-- 294 (659)
T ss_pred ceecCCCChhhheeecccCCccceeEecCCcceeChhHCccc-----ccCceEEEeccceEEeecccC----eEEecC--
Confidence 22221110 00110 0112233667777776443 446799999999999976652 377777
Q ss_pred cccCCCcccccccceEEEcCEEEEecCCCCcch
Q 006466 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 256 ~~~~G~~~~~~~~g~~i~a~~vV~A~G~~s~l~ 288 (644)
|.+|.+|..++|||+++.--
T Consensus 295 -------------G~~I~YdkcLIATG~~Pk~l 314 (659)
T KOG1346|consen 295 -------------GTTIGYDKCLIATGVRPKKL 314 (659)
T ss_pred -------------CcEeehhheeeecCcCcccc
Confidence 88999999999999998733
No 457
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=94.94 E-value=0.011 Score=59.70 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=43.6
Q ss_pred cCCCCcc-----ccCCCCCCCCcceeeCC--eeEEEecCCC---Cc---eeEEEecCCcccCCCCcceeeeCCCC--Cce
Q 006466 565 RDPKIPE-----LVNLPEYAGPESRYCPA--RVYEYVPDEK---NQ---LKLQINAQNCLHCKDFQACDIKDPKQ--NIK 629 (644)
Q Consensus 565 ~~~~~~~-----~~~~~~~~~~~~~~cpa--~~y~~~~~~~---~~---~~~~~~~~~c~~c~~~~~c~~~~p~~--~i~ 629 (644)
.|.+.|. .|. -|.++||. +++++....+ +. ....||.+.|+.|| .|..+||++ .|+
T Consensus 134 id~~~Ci~~~~~~C~------~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG---~C~~aCP~~~~AI~ 204 (254)
T PRK09476 134 VDQENCLNFQGLRCD------VCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCG---KCEKACVLEKAAIK 204 (254)
T ss_pred cchhhccccCCCchH------HHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcC---hhhHhcCCCcceEE
Confidence 5778887 565 69999996 7888764321 11 13689999999999 999999998 776
Q ss_pred e
Q 006466 630 W 630 (644)
Q Consensus 630 w 630 (644)
-
T Consensus 205 v 205 (254)
T PRK09476 205 V 205 (254)
T ss_pred E
Confidence 3
No 458
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=94.88 E-value=0.0081 Score=63.71 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=41.9
Q ss_pred ecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCc-------eeEEEecCCcccCCCCcceeeeCCCCCc
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-------LKLQINAQNCLHCKDFQACDIKDPKQNI 628 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~-------~~~~~~~~~c~~c~~~~~c~~~~p~~~i 628 (644)
+.|.+.|..|. .|...||.+++.+.++.... ....+|...|+.|| .|...||..++
T Consensus 8 vi~~~~C~gCg------~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg---~C~~vCP~~~~ 70 (341)
T PRK09326 8 VIEYDVCTACG------ACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCL---TCSRICPVVDG 70 (341)
T ss_pred EECcccCcChH------HHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcC---chhhhCCCCcc
Confidence 55788898887 79999999999886542100 01136788999999 99999997553
No 459
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=94.82 E-value=0.012 Score=63.16 Aligned_cols=40 Identities=25% Similarity=0.570 Sum_probs=34.8
Q ss_pred CCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCC
Q 006466 579 AGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPK 625 (644)
Q Consensus 579 ~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~ 625 (644)
.+.|+..||.+|++|+++ +++.||.++|++|+ .|.-+||.
T Consensus 247 ~~~~v~~Cp~~ai~~~~~----~~~~id~~~C~~Cm---~Ci~~~p~ 286 (402)
T TIGR02064 247 ENEVVNRCPTKAISWDGS----KELSIDNRECVRCM---HCINKMPK 286 (402)
T ss_pred chhHhhcCCccccccCCC----ceEEEcchhcCcCc---cccccCcc
Confidence 356899999999999643 17999999999999 99999996
No 460
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.79 E-value=0.098 Score=53.94 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=76.1
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccC
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (644)
+.....++|||||-.++..|--++-+ |-.+-++=|.+.+-. .++
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~gL------gsethlfiR~~kvLR-----------~FD------------------- 229 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAGL------GSETHLFIRQEKVLR-----------GFD------------------- 229 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhhc------CCeeEEEEecchhhc-----------chh-------------------
Confidence 34457899999999999999999988 999988877664321 010
Q ss_pred CcEEEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcc
Q 006466 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (644)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~ 263 (644)
..+...+.+..+..|++++.++.+++++...+|....++..
T Consensus 230 ----------------------------~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~----------- 270 (478)
T KOG0405|consen 230 ----------------------------EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSH----------- 270 (478)
T ss_pred ----------------------------HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEec-----------
Confidence 12244466777888999999999999999887744333333
Q ss_pred cccccceEEEcCEEEEecCCCCcc
Q 006466 264 ENFQRGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~s~l 287 (644)
|.....|.++.|.|..+..
T Consensus 271 -----~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 271 -----GTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred -----cccccccEEEEEecCCCCc
Confidence 3445699999999987653
No 461
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=94.72 E-value=0.025 Score=55.59 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=42.5
Q ss_pred CCCCcc-----ccCCCCCCCCcceeeCC--eeEEEecCCC--Cc-eeEEEecCCcccCCCCcceeeeCCCC--CceeeC
Q 006466 566 DPKIPE-----LVNLPEYAGPESRYCPA--RVYEYVPDEK--NQ-LKLQINAQNCLHCKDFQACDIKDPKQ--NIKWTV 632 (644)
Q Consensus 566 ~~~~~~-----~~~~~~~~~~~~~~cpa--~~y~~~~~~~--~~-~~~~~~~~~c~~c~~~~~c~~~~p~~--~i~w~~ 632 (644)
|.+.|. .|. -|.+.||. .++++....+ +. ....||.+.|+.|| .|.-.||+. +|+-..
T Consensus 129 d~~~C~~~~g~~C~------~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG---~C~~~CP~~~~AI~v~~ 198 (213)
T TIGR00397 129 GHETCLNYKGLNCS------ICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCG---TCEKHCVLSEAAIRVLP 198 (213)
T ss_pred CCCCcccCCCCCcc------cchhhCCCCcceEEEecccccCCcccceEEecccCCCcc---hhhHhCCCCCCeEEEee
Confidence 667787 555 69999998 6777653211 11 24689999999999 999999976 555444
No 462
>PRK09898 hypothetical protein; Provisional
Probab=94.51 E-value=0.017 Score=56.63 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=42.8
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
.|.+.|+.|. .|...||.++..+.+.. .+...|..|+ .|...||+++|.+..-
T Consensus 151 vd~~~CigC~------~C~~aCP~~ai~~~~~~-------~~~~kC~~Cg---~Cv~~CP~~Ai~~~~~ 203 (208)
T PRK09898 151 VDHKRCIGCS------ACTTACPWMMATVNTES-------KKSSKCVLCG---ECANACPTGALKIIEW 203 (208)
T ss_pred eccccCCCcC------cccccCCCCCCEecCCC-------CcCCcCcChH---HHHHhCCcccEEEecH
Confidence 4778898876 69999999998865331 1467899999 9999999999988743
No 463
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=94.41 E-value=0.018 Score=57.73 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=40.4
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCC--eeEEEecCCCC-ceeEE-------EecCCcccCCCCcceeeeCCCCCceee
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPA--RVYEYVPDEKN-QLKLQ-------INAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa--~~y~~~~~~~~-~~~~~-------~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
+.+ |++.|+.|. -|+++||. +...+.....+ ...+. ++...|++|| .|...||+++|.+.
T Consensus 141 i~~-d~~kCi~Cg------~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg---~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 141 FGI-DHNRCVLCT------RCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCG---KCVQACPTGAIFRK 210 (234)
T ss_pred EEe-ehhhCcCcc------HHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchH---HHHHhCCCCcEEec
Confidence 444 889999987 79999994 33222211111 11222 2456899999 99999999999765
No 464
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.22 E-value=0.12 Score=58.20 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
..+|+|||+|.+|.-.|..|++. ..+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~------a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV------AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT------SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh------cCCeEEEEecc
Confidence 56899999999999999999998 88999888765
No 465
>PRK10194 ferredoxin-type protein; Provisional
Probab=94.11 E-value=0.03 Score=52.76 Aligned_cols=57 Identities=11% Similarity=0.209 Sum_probs=42.7
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCc-----ccCCCCcceeeeCCCCCceeeC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNC-----LHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c-----~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
+.+.|..|. .|..+||.++++......-. ...++.++| +.|+ .|.-.||.++|.+..
T Consensus 64 ~~~~C~~C~------~C~~~CP~~ai~~~~~~~~~-~~~~~~~~C~~~~~~~C~---~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 64 KNNECSFCY------ACAQACPESLFSPRHTRAWD-LQFTIGDACLAYQSVECR---RCQDSCEPMAIIFRP 125 (163)
T ss_pred cCCCCCCch------hhHhhCcchheecccccccc-eeeeecccCCCccCCCcC---cchhhCCHhHeEeee
Confidence 567788876 79999999998754321111 334567778 6999 999999999999874
No 466
>PRK07118 ferredoxin; Validated
Probab=93.89 E-value=0.018 Score=59.14 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=38.7
Q ss_pred CcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceee
Q 006466 581 PESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWT 631 (644)
Q Consensus 581 ~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~ 631 (644)
.|...||.+++.+.++ .+.||.+.|+.|+ .|...||++.|++.
T Consensus 146 ~C~~aCp~~AI~~~~g-----~~~id~~~C~~Cg---~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 146 SCVAACPFDAIHIENG-----LPVVDEDKCTGCG---ACVKACPRNVIELI 188 (280)
T ss_pred HHHHhCCccCeEccCC-----eEEEChhhCcChh---HHHHhcCccceeee
Confidence 7999999999887643 6899999999999 99999999999887
No 467
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.78 E-value=0.22 Score=54.54 Aligned_cols=40 Identities=28% Similarity=0.126 Sum_probs=30.2
Q ss_pred ccCCCeEEEccCCcccCCCCCc-----chHHHHHHHHHHHHHHhc
Q 006466 412 PVFPGGAIIGCAAGFLNVPKIK-----GTHTAMKSGMLAAEAGFG 451 (644)
Q Consensus 412 ~~~~~v~LiGDAA~~~~P~~g~-----G~~~A~~sa~~lA~~l~~ 451 (644)
...++++.+||++...++..++ =.+.|...|.++|+.|..
T Consensus 259 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 259 TSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred eCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 3458999999999877665543 247788889998888753
No 468
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=93.65 E-value=0.043 Score=55.65 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=35.4
Q ss_pred CCcceeeCCeeEEEecCCCCceeEEEe-cCCcccCCCCcceeeeCCCCCceeeC
Q 006466 580 GPESRYCPARVYEYVPDEKNQLKLQIN-AQNCLHCKDFQACDIKDPKQNIKWTV 632 (644)
Q Consensus 580 ~~~~~~cpa~~y~~~~~~~~~~~~~~~-~~~c~~c~~~~~c~~~~p~~~i~w~~ 632 (644)
.-|.++||.|++.-.-...+..++..+ .+.|.+|+ .|...||.+.+.+..
T Consensus 172 ~~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~---~C~~vCP~~~vl~~~ 222 (255)
T TIGR02163 172 GWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCM---DCFNVCPEPQVLRMP 222 (255)
T ss_pred chhhCcCCCcchhhhhhccCceEEEeeccccCeEcC---CccCcCCCCceeecc
Confidence 358899999987422222223356665 89999999 999999987654443
No 469
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.63 E-value=0.41 Score=54.33 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=70.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcE
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (644)
...+||||-|+||..+.-.+.+.... -.+|+|+=.-+.+..... .|.+.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~---~~~iTvfg~Ep~~nY~Ri--------~Ls~v-------------------- 51 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPD---LYDITVFGEEPRPNYNRI--------LLSSV-------------------- 51 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcc---cceEEEeccCCCccccce--------eeccc--------------------
Confidence 35799999999999999888884211 467888755544322100 00000
Q ss_pred EEeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
+.....+ .++.-.=.+-.+++||+++.+.+|+.+..+. ++ |.++.
T Consensus 52 --l~~~~~~----------------edi~l~~~dwy~~~~i~L~~~~~v~~idr~~--k~--V~t~~------------- 96 (793)
T COG1251 52 --LAGEKTA----------------EDISLNRNDWYEENGITLYTGEKVIQIDRAN--KV--VTTDA------------- 96 (793)
T ss_pred --cCCCccH----------------HHHhccchhhHHHcCcEEEcCCeeEEeccCc--ce--EEccC-------------
Confidence 0000000 0111011223467899999999999987655 22 56554
Q ss_pred ccceEEEcCEEEEecCCCCcch
Q 006466 267 QRGVELRGRITLLAEGCRGSLS 288 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~l~ 288 (644)
|.++.+|.+|+|+|..+.+-
T Consensus 97 --g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 97 --GRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred --CcEeecceeEEecCcccccc
Confidence 78999999999999887643
No 470
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.12 Score=53.04 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=78.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
=.-+|||||-.+|.+|-.|+-. |+.|+|.=|+--+.+ +
T Consensus 199 GkTLvVGa~YVaLECAgFL~gf------g~~vtVmVRSI~LrG-------------------F----------------- 236 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGF------GYDVTVMVRSILLRG-------------------F----------------- 236 (503)
T ss_pred CceEEEccceeeeehhhhHhhc------CCCcEEEEEEeeccc-------------------c-----------------
Confidence 3689999999999999999999 999999887643332 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
-.++.+.+.+..++.|+.+...+-...++.-++|+. .|...... .++
T Consensus 237 -----------------------Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~---t~~------ 283 (503)
T KOG4716|consen 237 -----------------------DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTN---TGE------ 283 (503)
T ss_pred -----------------------cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeeccc---ccc------
Confidence 023466677888899999999988889988887864 34433311 111
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 006466 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l~~~l~~~~~~~ 298 (644)
+.+-..|-|+.|-|..+.++ .++++
T Consensus 284 -~~~~~ydTVl~AiGR~~~~~-----~l~L~ 308 (503)
T KOG4716|consen 284 -EGEEEYDTVLWAIGRKALTD-----DLNLD 308 (503)
T ss_pred -cccchhhhhhhhhccccchh-----hcCCC
Confidence 23346899999999665433 35665
No 471
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=93.61 E-value=0.024 Score=31.69 Aligned_cols=16 Identities=31% Similarity=0.764 Sum_probs=13.8
Q ss_pred CCcccCCCCcceeeeCCCC
Q 006466 608 QNCLHCKDFQACDIKDPKQ 626 (644)
Q Consensus 608 ~~c~~c~~~~~c~~~~p~~ 626 (644)
++|++|+ .|...||.+
T Consensus 2 ~~C~~C~---~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCG---SCVDVCPTQ 17 (17)
T ss_dssp CCCTTSS---SSTTTSTT-
T ss_pred CcCCCCc---hHHhhccCC
Confidence 5899999 999999964
No 472
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=93.58 E-value=0.012 Score=46.27 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=35.9
Q ss_pred ccccCCCCCCCCcceeeCCeeEEEecC------------CCCceeEEEecCCcc------cCCCCcceeeeCCC
Q 006466 570 PELVNLPEYAGPESRYCPARVYEYVPD------------EKNQLKLQINAQNCL------HCKDFQACDIKDPK 625 (644)
Q Consensus 570 ~~~~~~~~~~~~~~~~cpa~~y~~~~~------------~~~~~~~~~~~~~c~------~c~~~~~c~~~~p~ 625 (644)
|..|. .|+..||+++++...+ ..+...+.++++.|. .|| .|..+||+
T Consensus 2 C~~C~------~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~---~C~~vCP~ 66 (67)
T PF13484_consen 2 CITCG------KCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCG---ICQKVCPF 66 (67)
T ss_pred Ccchh------HHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccc---hhhccCCC
Confidence 55665 6999999999976511 012346788899998 999 99999996
No 473
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=93.35 E-value=0.045 Score=54.37 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=44.3
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCC-------cceeeeCCCCCceeeCCC
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDF-------QACDIKDPKQNIKWTVPE 634 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~-------~~c~~~~p~~~i~w~~p~ 634 (644)
.|.+.|+.|. .|...||.++..+.+. ..+.+.|..|++. ..|...||+++|.|...+
T Consensus 122 id~~~C~~C~------~C~~aCP~~A~~~~~~-------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 122 VHKDLCVGCQ------YCIAACPYRVRFIHPV-------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred echhhCCcch------HHHHhCCCCCcEecCC-------CCccccCCCCCcchhhCCCCCcccccCccCCEEEeccc
Confidence 3778898876 6999999999876532 1256899999842 379999999999987644
No 474
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=93.24 E-value=0.021 Score=58.54 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=43.3
Q ss_pred EEecCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccC---------CCCcceeeeCCCCCcee
Q 006466 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---------KDFQACDIKDPKQNIKW 630 (644)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c---------~~~~~c~~~~p~~~i~w 630 (644)
+.+.|.+.|+.|. -|+..||.+++.+..+ .++.+.|.-| . +|...||++++.+
T Consensus 156 iV~ID~ekCiGCg------~Cv~ACPygAi~~n~~-------~~~~eKC~~C~~Rie~G~~P---aCv~aCP~~A~~f 217 (321)
T TIGR03478 156 IVLVDQERCKGYR------YCVEACPYKKVYFNPQ-------SQKSEKCIGCYPRIEKGIAP---ACVKQCPGRIRFV 217 (321)
T ss_pred eEEECHHHCcchH------HHHHhCCCCCcEecCC-------CCchhhCCCchhhhccCCCC---HHHhhcCcccEEE
Confidence 3445888899886 6999999999987643 1467899999 6 9999999988876
No 475
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=93.03 E-value=0.027 Score=58.82 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=41.6
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCC----------cceeeeCCCCCceee
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDF----------QACDIKDPKQNIKWT 631 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~----------~~c~~~~p~~~i~w~ 631 (644)
.|.+.|+.|. -|+..||.++..+..+. .......|.-|+++ -+|...||+++|.+-
T Consensus 140 id~dkCigCg------~Cv~aCP~gai~~~~~~-----~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG 205 (328)
T PRK10882 140 YDKDVCTGCR------YCMVACPFNVPKYDYNN-----PFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFG 205 (328)
T ss_pred CCHHHcCccc------HHHHhCCccceeccccc-----cccceeecccccccchhhhhcCCCChhhhhccccceEec
Confidence 3778898876 69999999999876442 22345789999921 119999999999763
No 476
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.36 Score=46.89 Aligned_cols=102 Identities=20% Similarity=0.299 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.-.+|||||-+.+.-|..|.+. +.+|-+|-|++.+.+
T Consensus 158 k~laVIGGGDsA~EEA~fLtky------askVyii~Rrd~fRA------------------------------------- 194 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKY------ASKVYIIHRRDHFRA------------------------------------- 194 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhh------ccEEEEEEEhhhhhH-------------------------------------
Confidence 4588999999999999999999 999999999886554
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhc-CCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~-Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~ 266 (644)
...|.++++++ ++++++++.+++..-+. +.+-++++.+. +.|+
T Consensus 195 ---------------------------s~~Mq~ra~~npnI~v~~nt~~~ea~gd~-~~l~~l~ikn~---~tge----- 238 (322)
T KOG0404|consen 195 ---------------------------SKIMQQRAEKNPNIEVLYNTVAVEALGDG-KLLNGLRIKNV---KTGE----- 238 (322)
T ss_pred ---------------------------HHHHHHHHhcCCCeEEEechhhhhhccCc-ccccceEEEec---ccCc-----
Confidence 34477777765 58999999887775542 34445555442 2333
Q ss_pred ccceEEEcCEEEEecCCCCcchHHH
Q 006466 267 QRGVELRGRITLLAEGCRGSLSEKL 291 (644)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~l~~~l 291 (644)
...+..+-+..|-|..+. .+-|
T Consensus 239 --~~dl~v~GlFf~IGH~Pa-t~~l 260 (322)
T KOG0404|consen 239 --ETDLPVSGLFFAIGHSPA-TKFL 260 (322)
T ss_pred --ccccccceeEEEecCCch-hhHh
Confidence 256889999999996653 4433
No 477
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=92.88 E-value=0.046 Score=62.60 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=39.1
Q ss_pred cEEecCCCCccccCCCCCCCCcce--eeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCc
Q 006466 561 HLRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNI 628 (644)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~~~~~--~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i 628 (644)
.+.+ |++.|..|. .|.. .||+... .++ +..||. .|+.|| .|...||.++|
T Consensus 544 ~~~i-d~~~C~~C~------~C~~~~~CP~~~~--~~~-----~~~i~~-~C~~Cg---~C~~~CP~~Ai 595 (595)
T TIGR03336 544 PYKV-DQDKCIGCK------KCIKELGCPAIEP--EDK-----EAVIDP-LCTGCG---VCAQICPFDAI 595 (595)
T ss_pred eEEE-cCCcCCCcc------ccccccCCCCccc--cCC-----cceeCC-CCcCHH---HHHhhCccccC
Confidence 4555 778899987 6999 9997552 222 578888 799999 99999998875
No 478
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=92.85 E-value=0.023 Score=58.16 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=34.3
Q ss_pred CCcceeeCCeeEEEecCCCCceeEE-EecCCcccCCCCcceeeeCCCCCce
Q 006466 580 GPESRYCPARVYEYVPDEKNQLKLQ-INAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 580 ~~~~~~cpa~~y~~~~~~~~~~~~~-~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
.-|.+.||.|++.-.-...+..++. +|.++|.+|+ .|...||.+.+.
T Consensus 179 ~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~---~C~~~CP~~~i~ 226 (271)
T PRK09477 179 GWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCM---DCFHVCPEPQVL 226 (271)
T ss_pred chhhccCCHHHHHHhcccccccccccCCcccCcccC---CcCCcCCCccee
Confidence 4699999999764221212222566 8999999999 999999987654
No 479
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=92.72 E-value=0.028 Score=64.74 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=36.0
Q ss_pred CCCCccccCCCCCCCCcceeeCCeeEEE-----ecCCCCceeEEEecCCcccCCCCcceeeeCCCC
Q 006466 566 DPKIPELVNLPEYAGPESRYCPARVYEY-----VPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQ 626 (644)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~cpa~~y~~-----~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~ 626 (644)
+...|+.|. -|..+||.+.+-. ....+-.....++...|++|| .|...||.+
T Consensus 368 ~e~~CI~CG------~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG---~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIRCG------ACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECG---ACAYVCPSN 424 (695)
T ss_pred chhhcCCcc------cHHHHCCccchhhhHHHhhhccccchhhhcChhhccccC---cccccCCCC
Confidence 567798887 7999999998731 001010001246677899999 999999965
No 480
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.65 E-value=0.13 Score=56.92 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcccccCccChHHHHHHhhhhhhcCCCeeeeccCCcEE
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (644)
.+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 209 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL------GSKVTVIEMLDRILPG------E----------------------------- 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCCCCCC------C-----------------------------
Confidence 5899999999999999999999 9999999998754320 0
Q ss_pred EeccCCccccCCCCCCCCcEEEcHHHHHHHHHHHHHhcCCEEecCceEEEEEEcCCCcEEEEEeCcCccccCCCcccccc
Q 006466 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (644)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~v~~~~~g~v~gV~~~d~g~~~~G~~~~~~~ 267 (644)
...+.+.+.+.+++.|+++++++.|+++..++ +.+ .|.+.+ |+
T Consensus 210 -----------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~------g~------ 252 (461)
T TIGR01350 210 -----------------------DAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKG------GE------ 252 (461)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeC------Cc------
Confidence 02234556777788899999999999997665 334 244433 11
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 006466 268 RGVELRGRITLLAEGCRGSL 287 (644)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~l 287 (644)
..++.+|.||+|+|..+.+
T Consensus 253 -~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 253 -TETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred -EEEEEeCEEEEecCCcccC
Confidence 1479999999999988753
No 481
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.31 E-value=0.18 Score=50.14 Aligned_cols=52 Identities=27% Similarity=0.540 Sum_probs=40.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC---------CCCcccccCccChHHHHHH
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE---------VGAHIISGNVFEPRALNEL 166 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~---------~g~~~~~g~~i~~~~l~~l 166 (644)
+++|||+|..|...|..|.+. |..|+++|+.++ ...+...|...+++.|.++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a 62 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA 62 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc
Confidence 689999999999999999999 999999998753 2333344556666666443
No 482
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.10 E-value=0.19 Score=46.87 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
.|.|+|||..|.++|..|++. |.+|.++.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH
Confidence 389999999999999999999 99999999875
No 483
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.07 E-value=0.17 Score=56.04 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~ 148 (644)
.|+|||.|++|+++|..|++. |++|++.|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCch
Confidence 489999999999999999999 9999999988653
No 484
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=92.06 E-value=0.051 Score=58.30 Aligned_cols=40 Identities=33% Similarity=0.672 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCc
Q 006466 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (644)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (644)
+.-+|+|||||+||++||+.|++. |++|.++||.+.+|++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~------G~~v~LVEKepsiGGr 162 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADM------GFKVYLVEKEPSIGGR 162 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHc------CCeEEEEecCCccccc
Confidence 456899999999999999999999 9999999999999984
No 485
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=91.98 E-value=0.078 Score=50.77 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=40.0
Q ss_pred CCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCCCcceeeeCCCCCceeeCC
Q 006466 579 AGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKDFQACDIKDPKQNIKWTVP 633 (644)
Q Consensus 579 ~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~w~~p 633 (644)
.++.+.-||..-+++.++-.+ ++.+|.+.|+.|+ .|...||.+.|.....
T Consensus 11 ~g~~T~~yP~~~~~~~~~~rg--~p~~d~~~C~~C~---~Cv~~CP~~ai~~~~~ 60 (180)
T PRK12387 11 TGTATSSYPLEPIAVDKNFRG--KPEYNPQQCIGCA---ACVNACPSNALTVETD 60 (180)
T ss_pred cCCccccCCCCCCCCCCCCCC--ceEEChhhCcChh---HHHHhcCccCeEeecc
Confidence 468899999888775443122 6899999999999 9999999999977653
No 486
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=91.88 E-value=1 Score=48.12 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=31.4
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC
Q 006466 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (644)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~ 147 (644)
......|||+|.|-+|.++.-.|-.. -.+|+||..+..
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts------~YdV~vVSPRny 89 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTS------LYDVTVVSPRNY 89 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccc------ccceEEeccccc
Confidence 34567899999999999988777766 789999987764
No 487
>PLN02976 amine oxidase
Probab=91.46 E-value=5 Score=49.77 Aligned_cols=39 Identities=21% Similarity=0.010 Sum_probs=30.2
Q ss_pred CCCeEEEccCCcccCCCCCcchHHHHHHHHHHHHHHhccccC
Q 006466 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (644)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~A~~sa~~lA~~l~~~l~~ 455 (644)
.++++++|++.+...| .=++-|+++|..+|+.|...+..
T Consensus 1150 ggRLFFAGEATS~~~p---GTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHP---DTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCcEEEEehhhhCCCc---chHHHHHHHHHHHHHHHHHHHHc
Confidence 4579999999764433 34688999999999999887754
No 488
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.45 E-value=0.23 Score=47.50 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~ 147 (644)
.|.|||+|..|...|..+++. |++|+++|..++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH
Confidence 388999999999999999999 999999999764
No 489
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=91.06 E-value=0.13 Score=57.91 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=42.6
Q ss_pred cEEecCCCCccccCCCCCCCCcceeeC----CeeEEEecCCC-C----ceeEEEecCCcccCCCCcceeeeCCCCCce
Q 006466 561 HLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEK-N----QLKLQINAQNCLHCKDFQACDIKDPKQNIK 629 (644)
Q Consensus 561 h~~~~~~~~~~~~~~~~~~~~~~~~cp----a~~y~~~~~~~-~----~~~~~~~~~~c~~c~~~~~c~~~~p~~~i~ 629 (644)
-..+-||+.|+.|. -|++.|= +.++.++.+.. . ....-||..-|+.|| .|.-.||..++.
T Consensus 142 Pfy~ydp~qCIlCg------RCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG---~CvtVCP~nALm 210 (978)
T COG3383 142 PFYIYDPNQCILCG------RCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCG---ACVTVCPVNALM 210 (978)
T ss_pred CeEEecchheeehh------HHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccC---ccceecchhhhh
Confidence 35566999999997 7999998 34444433211 0 012457888999999 999999987763
No 490
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.95 E-value=0.43 Score=41.70 Aligned_cols=49 Identities=35% Similarity=0.601 Sum_probs=36.1
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC-------CCCcccccCccChHHHH
Q 006466 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-------VGAHIISGNVFEPRALN 164 (644)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-------~g~~~~~g~~i~~~~l~ 164 (644)
|+|+|.|..|...|..|.+. +.+|+++|+.+. .+.....|...++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~ 56 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLE 56 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCcHHHHHHHhcccccccccchhhhHHh
Confidence 79999999999999999998 889999999863 23333455555555553
No 491
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=90.69 E-value=0.8 Score=51.20 Aligned_cols=39 Identities=38% Similarity=0.524 Sum_probs=36.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCCCCCcc
Q 006466 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (644)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (644)
.||||||||++||+||+.|++. |++|+|+||++.+||.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~------G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR------GYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCCcc
Confidence 5899999999999999999999 99999999999988754
No 492
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=90.58 E-value=0.073 Score=54.54 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=41.2
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEecCCCCceeEEEecCCcccCCC------CcceeeeCCCCCceee
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKD------FQACDIKDPKQNIKWT 631 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~~~~~~~~~~~~~~~~c~~c~~------~~~c~~~~p~~~i~w~ 631 (644)
.|.+.|+.|. -|+..||.++.++.+.. + ....|.-|.+ -.+|...||+++|+|.
T Consensus 121 id~dkCigC~------~Cv~aCP~~a~~~~~~~-~------~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg 180 (283)
T TIGR01582 121 FDHSKCIGCG------YCIVGCPFNIPRYDKVD-N------RPYKCTLCIDRVSVGQEPACVKTCPTNAISFG 180 (283)
T ss_pred EeHHHCCcch------HHHhhCCCCCcEEcCCC-C------ChhhhcccccccccCCCChHhCcccHhhEEEC
Confidence 3788899886 69999999999886532 1 2346888843 2389999999999885
No 493
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=90.46 E-value=0.11 Score=57.03 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=36.2
Q ss_pred cCCCCccccCCCCCCCCcceeeCCeeEEEe-----cCCCCceeEEEecCCcccCCCCcceeeeCCCC
Q 006466 565 RDPKIPELVNLPEYAGPESRYCPARVYEYV-----PDEKNQLKLQINAQNCLHCKDFQACDIKDPKQ 626 (644)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~cpa~~y~~~-----~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~~ 626 (644)
.+.+.|+.|. -|...||.+++... ...+-.....++...|++|| .|...||.+
T Consensus 360 ~~~~~Ci~Cg------~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg---~C~~vCP~~ 417 (435)
T TIGR01945 360 SPEKPCIRCG------KCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECG---CCSYVCPSN 417 (435)
T ss_pred ccCCcCcCcc------chhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCC---CcccccCCC
Confidence 3567898887 79999998865210 00000112356788999999 999999964
No 494
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=90.42 E-value=0.13 Score=60.48 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=37.4
Q ss_pred ecCCCCccccCCCCCCCCcceeeCC----eeEEEecCCCCc--------------------eeEEE-----ecCCcccCC
Q 006466 564 LRDPKIPELVNLPEYAGPESRYCPA----RVYEYVPDEKNQ--------------------LKLQI-----NAQNCLHCK 614 (644)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~cpa----~~y~~~~~~~~~--------------------~~~~~-----~~~~c~~c~ 614 (644)
..|++.|+.|. -|+|+||- +++.+....... ..-.| +...|+.||
T Consensus 137 ~~D~~rCI~C~------RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG 210 (819)
T PRK08493 137 NYDPSLCIVCE------RCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCG 210 (819)
T ss_pred Eechhhccccc------HHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccC
Confidence 44999999998 79999994 222222111000 00111 246899999
Q ss_pred CCcceeeeCCCCCce
Q 006466 615 DFQACDIKDPKQNIK 629 (644)
Q Consensus 615 ~~~~c~~~~p~~~i~ 629 (644)
.|.-.||+++|.
T Consensus 211 ---~Cv~VCPvGAL~ 222 (819)
T PRK08493 211 ---ECIAVCPVGALS 222 (819)
T ss_pred ---cHHHhCCCCccc
Confidence 999999999884
No 495
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.28 E-value=0.41 Score=45.22 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
...|+|+|+|.+|..||..|..+ |++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHT------T-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHC------CCEEEeccCCH
Confidence 46799999999999999999999 99999999875
No 496
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.25 E-value=0.42 Score=43.96 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
|+|+|+|-.|+..|..|++. |.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc
Confidence 68999999999999999998 99999999875
No 497
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.07 E-value=0.26 Score=47.37 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=27.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC
Q 006466 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (644)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~ 147 (644)
.|.|||.|-.||.+|..|++. |++|+.+|..++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~------G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK------GHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT------TSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhC------CCEEEEEeCChH
Confidence 589999999999999999999 999999998864
No 498
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.03 E-value=0.28 Score=54.50 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~ 147 (644)
.-.|+|+|+|++|+.++..++.. |.+|+++|.+++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 46899999999999999999988 999999998764
No 499
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.99 E-value=0.33 Score=46.91 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCeEEEEcCCC
Q 006466 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (644)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (644)
...|+|||+|.++..+|..|++. |.+|+++-|++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~------g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA------GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT------CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh------CCEEEEEecCC
Confidence 46899999999999999999999 99999998876
No 500
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=89.93 E-value=0.047 Score=59.18 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=32.9
Q ss_pred CccccCCCCCCCCcceeeCCeeEE----Ee-cCCCCceeEEEecCCcccCCCCcceeeeCCC
Q 006466 569 IPELVNLPEYAGPESRYCPARVYE----YV-PDEKNQLKLQINAQNCLHCKDFQACDIKDPK 625 (644)
Q Consensus 569 ~~~~~~~~~~~~~~~~~cpa~~y~----~~-~~~~~~~~~~~~~~~c~~c~~~~~c~~~~p~ 625 (644)
.|+.|. -|+++||.+..- |. ..++-.+...-+...|+||| .|...||.
T Consensus 366 sCi~C~------~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg---~Ca~vCPs 418 (529)
T COG4656 366 SCIRCS------LCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECG---ACAYVCPS 418 (529)
T ss_pred ccccHH------HHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhC---cchhcCCC
Confidence 788887 699999987652 11 01111112334788999999 99999994
Done!