BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006468
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 7 TGVPWVMCK-----EDDAPDPV---INSCNGFYCDA----FSPNKPYKPTLWTEAWSGWF 54
TGVP C E++A D + IN G D +P P +E WSGWF
Sbjct: 186 TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWF 245
Query: 55 TEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPF-----ITTSYD 109
+G R ++L + + S F+ Y HGGT+FG G F TSYD
Sbjct: 246 DHWGAKHETRSAEELVKGXKEXLDRNIS-FSLYXTHGGTSFGHWGGANFPNFSPTCTSYD 304
Query: 110 YDAPLDEYGLMRQPKYGHLKQL 131
YDAP++E G + PKY ++ L
Sbjct: 305 YDAPINESGKV-TPKYLEVRNL 325
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 26/93 (27%)
Query: 434 LDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPR 493
L+ + KG VW+NG +IGRYW P Q Y VP
Sbjct: 525 LNXXNWSKGXVWVNGHAIGRYWEI-------------------------GPQQTLY-VPG 558
Query: 494 SWLKPTKNLLVVFEELGGDASRISLVKRSVARV 526
WLK +N +++ + G + +++ + V
Sbjct: 559 CWLKKGENEIIILDXAGPSKAETEGLRQPILDV 591
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 43 PTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAG-- 100
P + E W GWF + + R ++LA AV +++G N YM+HGGTNFG G
Sbjct: 233 PLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCS 290
Query: 101 --GPF---ITTSYDYDAPLDEYG 118
G TSYDYDA LDE G
Sbjct: 291 ARGTLDLPQVTSYDYDALLDEEG 313
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 69/299 (23%)
Query: 244 ESSTLTAIGLLEQINI--TRDT----SDYLWYMTSVEISSSESFLR-------GGQKPTL 290
ES L AI L+E++++ T D+ + L+ E+ S +L ++ L
Sbjct: 342 ESMELDAIPLVEKVSLFETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDAEEERL 401
Query: 291 TVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLH 350
+ ++++GQ++ + + T + G + G++++ +L +G N G
Sbjct: 402 RIIDGRDRAQLYVDGQWVKTQYQTEIGEDIFYQGK---KKGLSRLDILIENMGRVNYGHK 458
Query: 351 Y--ETWETGVRGAVV--LHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRG 406
+ +T G+R V LH L L W+ + + L +P + +D+++G
Sbjct: 459 FLADTQRKGIRTGVCKDLHFL------LNWKHY---------PLPLDNPEK---IDFSKG 500
Query: 407 SLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTC 466
QGQ + Y + P LDL GKG ++NGQ++GR+W
Sbjct: 501 --WTQGQPAFYAYDFTVEEPKDT---YLDLSEFGKGVAFVNGQNLGRFWNV--------- 546
Query: 467 SYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVAR 525
PT Y +P S+LK N +++FE G I L ++ +
Sbjct: 547 ----------------GPTLSLY-IPHSYLKEGANRIIIFETEGQYKEEIHLTRKPTLK 588
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 39 KPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFG-- 96
+P P + +E ++GW +G + +A ++ + +G S N YM+ GGTNF
Sbjct: 236 EPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYW 294
Query: 97 RTAGGPFIT--TSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDP 147
A P+ TSYDYDAPL E G + + + + + K+ E + S P
Sbjct: 295 NGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTP 347
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 418 WYKAYFDAPTGNEPLALD----LRSMGKGQVWINGQSIGRYWMA 457
+Y F P+G L D KGQVWING ++GRYW A
Sbjct: 528 FYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPA 571
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 36 SPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQK-----GGSFFNYYMYH 90
SP+ PY E G F +GG + L R K G +F N YM
Sbjct: 250 SPSTPYS---LVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIF 306
Query: 91 GGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVT 150
GGTN+G G P TSYDY + + E + + KY LK L K+ LV ++P
Sbjct: 307 GGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLV-ANPGDL 364
Query: 151 SLGTY 155
S TY
Sbjct: 365 STSTY 369
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 558 LQCAPGQSITSIEFASFG-TPSGTCGS----FQKGTCHAPNSHAMLEKECIGQESCSIFI 612
L+C PG + +E A++G T C + + C+ P++ ++ + C + C +
Sbjct: 20 LRC-PGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVA 78
Query: 613 SSGVFGTDPCPNVLKRLSVQAVC 635
S F DPCP K L VQ C
Sbjct: 79 GSDAF-PDPCPGTYKYLEVQYDC 100
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 40 PYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQK-----GGSFFNYYMYHGGTN 94
P P E G F FGG + + R K G + FN YM GGTN
Sbjct: 270 PSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTN 329
Query: 95 FGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGT 154
+G G P TSYDY A + E + + KY LK + +K+ +++ P + G
Sbjct: 330 WGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSP-GYITATPENATQGV 387
Query: 155 YQQAH 159
Y +
Sbjct: 388 YSDSQ 392
>pdb|2ZX0|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX0|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|B Chain B, Rhamnose-Binding Lectin Csl3
Length = 195
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 589 CHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVC 635
C + ++ + + + C G+ C + +S+ VFG DPC K L V C
Sbjct: 149 CLSQSTTSKMAERCDGKRQCIVKVSNSVFG-DPCVGTYKYLDVAYTC 194
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 589 CHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVC 635
C + +S + + + C G+ C + S+ VFG DPC K L + C
Sbjct: 49 CLSQSSTSKMAERCGGKSECIVPASNFVFG-DPCVGTYKYLDTKYSC 94
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 502 LLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQCA 561
LL FE G S + + +SVA C+D PT N IEN N AK +
Sbjct: 258 LLYAFESSSGSISNLYNMIKSVASDCSD-----PTLLGNFIENHDNPRF---AKYTSDYS 309
Query: 562 PGQSITSIEFASFGTPSGTCGSFQ 585
+++ S F S G P G Q
Sbjct: 310 QAKNVLSYIFLSDGIPIVYAGEEQ 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,420,450
Number of Sequences: 62578
Number of extensions: 950141
Number of successful extensions: 2207
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2191
Number of HSP's gapped (non-prelim): 14
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)