Query 006468
Match_columns 644
No_of_seqs 300 out of 1416
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-153 3E-158 1304.4 55.6 632 1-636 208-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1.3E-95 3E-100 801.3 30.3 450 1-532 196-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 3.8E-30 8.2E-35 273.1 3.3 131 2-134 167-318 (319)
4 KOG4729 Galactoside-binding le 99.8 1.3E-21 2.9E-26 195.4 8.3 91 550-641 40-135 (265)
5 PF02140 Gal_Lectin: Galactose 99.8 1.3E-20 2.7E-25 160.8 5.4 76 558-635 1-80 (80)
6 PF13364 BetaGal_dom4_5: Beta- 99.0 5.9E-10 1.3E-14 101.1 7.5 69 413-506 33-104 (111)
7 PF13364 BetaGal_dom4_5: Beta- 98.6 3.1E-07 6.7E-12 83.4 9.9 84 254-344 24-110 (111)
8 PF02837 Glyco_hydro_2_N: Glyc 98.3 5.8E-06 1.3E-10 79.5 11.0 99 261-365 64-164 (167)
9 PF02837 Glyco_hydro_2_N: Glyc 96.9 0.0021 4.5E-08 61.7 6.6 67 413-506 66-136 (167)
10 PRK10150 beta-D-glucuronidase; 96.7 0.0083 1.8E-07 69.8 11.0 100 262-367 62-179 (604)
11 COG1874 LacA Beta-galactosidas 96.6 0.0019 4.1E-08 75.0 4.4 77 43-120 238-332 (673)
12 PRK10340 ebgA cryptic beta-D-g 96.4 0.014 3E-07 71.9 10.4 97 265-367 109-206 (1021)
13 PRK09525 lacZ beta-D-galactosi 96.0 0.027 5.8E-07 69.4 10.4 94 265-367 120-218 (1027)
14 PRK10340 ebgA cryptic beta-D-g 93.2 0.2 4.4E-06 61.8 7.9 40 415-454 109-151 (1021)
15 PRK10150 beta-D-glucuronidase; 93.0 0.23 5.1E-06 57.9 7.6 42 414-455 64-108 (604)
16 PRK09525 lacZ beta-D-galactosi 92.1 0.26 5.7E-06 60.9 6.7 40 414-453 119-162 (1027)
17 PF11875 DUF3395: Domain of un 86.9 0.94 2E-05 43.5 4.7 67 569-637 55-135 (151)
18 PF02449 Glyco_hydro_42: Beta- 85.9 2.4 5.2E-05 46.4 7.9 87 39-137 286-373 (374)
19 PF06832 BiPBP_C: Penicillin-B 73.9 4.6 9.9E-05 34.8 4.0 49 289-345 35-84 (89)
20 PF14683 CBM-like: Polysacchar 70.4 4.6 9.9E-05 39.4 3.6 62 438-510 91-153 (167)
21 PF11324 DUF3126: Protein of u 67.4 14 0.00031 30.2 5.1 24 294-317 25-48 (63)
22 PF08308 PEGA: PEGA domain; I 66.1 5.2 0.00011 32.7 2.6 47 289-347 3-49 (71)
23 PF08531 Bac_rhamnosid_N: Alph 64.4 9.3 0.0002 37.2 4.4 53 433-506 7-62 (172)
24 KOG4729 Galactoside-binding le 63.1 9.1 0.0002 39.7 4.1 87 551-639 140-234 (265)
25 KOG2024 Beta-Glucuronidase GUS 63.0 13 0.00027 38.9 5.1 60 251-311 71-133 (297)
26 PF08531 Bac_rhamnosid_N: Alph 59.9 40 0.00087 32.8 7.9 56 289-345 7-69 (172)
27 PF07691 PA14: PA14 domain; I 53.5 69 0.0015 29.3 8.1 70 266-343 47-122 (145)
28 PLN03059 beta-galactosidase; P 53.1 61 0.0013 39.4 9.3 43 413-455 468-517 (840)
29 KOG0496 Beta-galactosidase [Ca 41.1 7.2 0.00016 45.4 -0.7 80 522-617 309-389 (649)
30 COG2884 FtsE Predicted ATPase 26.0 59 0.0013 32.9 2.9 16 440-455 55-70 (223)
31 PF02055 Glyco_hydro_30: O-Gly 22.5 1.8E+02 0.004 33.4 6.4 128 37-177 325-462 (496)
32 smart00758 PA14 domain in bact 22.1 2.8E+02 0.006 25.2 6.5 66 267-341 46-112 (136)
33 cd02848 Chitinase_N_term Chiti 20.8 3.3E+02 0.0071 24.8 6.3 48 293-343 45-93 (106)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.5e-153 Score=1304.40 Aligned_cols=632 Identities=62% Similarity=1.146 Sum_probs=571.8
Q ss_pred CcccCCCcceEEEecCCCCCcccccccCcccccccCCCCCCCCeeEeeecCccccccCCCCCCCCHHHHHHHHHHHHHhC
Q 006468 1 MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKG 80 (644)
Q Consensus 1 ~a~~~g~~vP~~~c~~~~~~~~~i~t~ng~~~~~f~~~~p~~P~~~~E~~~Gwf~~Wg~~~~~~~~~~~~~~~~~~l~~g 80 (644)
||+++||+|||+||+|+++++++|+||||++|+.|....+.+|+|+||||+|||++||++++.|+++|++..++++|++|
T Consensus 208 ~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g 287 (840)
T PLN03059 208 MAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNG 287 (840)
T ss_pred HHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 67899999999999999889999999999999999887777999999999999999999999999999999999999999
Q ss_pred CceeeeeEEeccCCCCCCCCCCcccccccCCCCCCcCCCCCchhHHHHHHHHHHHHhhhccccCCCCcccCCCccceeee
Q 006468 81 GSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHV 160 (644)
Q Consensus 81 ~s~~n~YM~hGGTNfG~~~G~~~~~TSYDy~Apl~E~G~~~~~ky~~lr~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 160 (644)
+|++|||||||||||||||||++++|||||||||+|+|++++|||.+||++|.+++.+++.|+..+|....+++.+++++
T Consensus 288 ~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~ 367 (840)
T PLN03059 288 GSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHV 367 (840)
T ss_pred CeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEE
Confidence 99889999999999999999999999999999999999995469999999999999998888877777778999999999
Q ss_pred eccCCcceeeEeeccCCccceEEEeCCeeeccCCCceeecCCCCceeeccceeeeeeeeeeccccccccccccccccccc
Q 006468 161 FSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDIS 240 (644)
Q Consensus 161 y~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~f~t~~v~~~~~~~~~~~~~~~~~~w~~~~e~~~ 240 (644)
|+... .|++|+.|.+.+...+|.|++++|.||+|||||||||+.++|+|++++.|+..++..+. ...+.|+++.|++.
T Consensus 368 y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~-~~~~~w~~~~e~~~ 445 (840)
T PLN03059 368 FKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPV-GSTFSWQSYNEETA 445 (840)
T ss_pred ccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccceeecccc-cccccceeeccccc
Confidence 99666 79999999998899999999999999999999999999999999999888766543322 34668999999954
Q ss_pred cccCCCccccccchhhcCCCCCCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEccccCcce
Q 006468 241 SLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRF 320 (644)
Q Consensus 241 ~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~ 320 (644)
+...+.+++...++||+++|+|.+||+||+|+|....++..++.+.+++|+|.+++|++||||||+++|++++......+
T Consensus 446 ~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~ 525 (840)
T PLN03059 446 SAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKL 525 (840)
T ss_pred ccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcce
Confidence 33133566677889999999999999999999988766544566777899999999999999999999999987766678
Q ss_pred EEeecccccCCCCeEEEEEEecCccccccCCCccccceeecEEEccccCCCccCccCCceEeccCccccccccCCCCCCC
Q 006468 321 TFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATS 400 (644)
Q Consensus 321 ~~~~~~~l~~g~~~L~ILven~Gr~N~G~~~~~~~KGI~G~V~l~g~~~~~~~L~~~~W~~~~~l~ge~~~~~~~~~~~~ 400 (644)
.++.++.++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|.+.+.++|+++.|.|+++|.||.++|+.+++...
T Consensus 526 ~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~ 605 (840)
T PLN03059 526 TFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSS 605 (840)
T ss_pred EEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCC
Confidence 88877788889999999999999999999999999999999999998777789998889999999999999887655557
Q ss_pred CcccCCCccccccCCceEEEEEEeCCCCCCceEEEeCCCceEEEEECCeeeeeeeeccc-cCCCCCCccCCCcCCccccC
Q 006468 401 VDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYA-KGDCKTCSYAGTFRPINCQR 479 (644)
Q Consensus 401 ~~W~~~~~~~~~~~~~~~Yr~~F~~p~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~~-~g~~~~~~~~G~~~~~~~~~ 479 (644)
+.|...+..+. .++|+|||++|++|++.|||||||++||||+|||||+||||||+.++ .+.|+.|+|+|.|++.||+|
T Consensus 606 ~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~ 684 (840)
T PLN03059 606 VEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRT 684 (840)
T ss_pred ccccccccccC-CCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhc
Confidence 88976543333 45799999999999999999999999999999999999999997642 23348899999999999999
Q ss_pred CCCCCceeeeecCcccccCCcceEEEEEecCCCCcceEEEeecccccccccccCCCCCCCcccccCCCCCcCCCCceeee
Q 006468 480 RCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQ 559 (644)
Q Consensus 480 ~~~~PQqtlY~VP~~~Lk~g~N~ivvfE~~g~~~~~i~l~~~~~~~~c~~~~e~~p~~~~~~~~~~~~~~~ce~~~~~L~ 559 (644)
|||+|||+|||||++|||+|+|+||||||+|++|..|+|.++++++||++++|+|| +|.+|.+.....-+-....++|+
T Consensus 685 ~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~ 763 (840)
T PLN03059 685 NCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLW 763 (840)
T ss_pred cCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccCC-ccccccccccccccccCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999995 69999995555423556789999
Q ss_pred cCCCCeEeeeeeeccCCCCCCCCCCCCCCccCCChHHHHHHHcCCCCceEEEecCCCccCCCCCCCCceEEEEEEee
Q 006468 560 CAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCS 636 (644)
Q Consensus 560 C~~g~~Is~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~g~~KYL~V~Y~C~ 636 (644)
|+.|++|++|.+|+|||+.++|+++.+++|++++++++|+++|+||++|+|.+++.+||+|||+||+|||+|+|.|+
T Consensus 764 C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 764 CPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred CCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 99999997799999999999999999999999999999999999999999999999996699999999999999994
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-95 Score=801.27 Aligned_cols=450 Identities=58% Similarity=1.050 Sum_probs=401.6
Q ss_pred CcccCCCcceEEEecCCCCCcccccccCcccc-cccC-CCCCCCCeeEeeecCccccccCCCCCCCCHHHHHHHHHHHHH
Q 006468 1 MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFS-PNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQ 78 (644)
Q Consensus 1 ~a~~~g~~vP~~~c~~~~~~~~~i~t~ng~~~-~~f~-~~~p~~P~~~~E~~~Gwf~~Wg~~~~~~~~~~~~~~~~~~l~ 78 (644)
||.+++++|||+||+|.+|+|++|++|||++| +.|. +.+|++|+||||||+|||++||++++.|++++++..++++++
T Consensus 196 m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~va~fls 275 (649)
T KOG0496|consen 196 LATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGGPHPCRPVEDIALSVARFLS 275 (649)
T ss_pred EEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhhCCCCCCCCHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999 8898 889999999999999999999999999999999999999999
Q ss_pred hCCceeeeeEEeccCCCCCCCCCCcccccccCCCCCCcCCCCCchhHHHHHHHHHHHHhhhccccCCCCcccCCCcccee
Q 006468 79 KGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQA 158 (644)
Q Consensus 79 ~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDy~Apl~E~G~~~~~ky~~lr~~~~~~~~~~~~l~~~~p~~~~~~~~~~~ 158 (644)
+|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.++|.+|..+..+++.+..+++...
T Consensus 276 ~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~-------- 344 (649)
T KOG0496|consen 276 KGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTA-------- 344 (649)
T ss_pred cCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhhcCccccccCcccc--------
Confidence 9999999999999999999998 99999999999999 999999999999999999999988877765443
Q ss_pred eeeccCCcceeeEeeccCCccceEEEeCCeeeccCCCceeecCCCCceeeccceeeeeeeeeeccccccccccccccccc
Q 006468 159 HVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDED 238 (644)
Q Consensus 159 ~~y~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~f~t~~v~~~~~~~~~~~~~~~~~~w~~~~e~ 238 (644)
.|....+.|..||.|.+....+.+.|++..|.+++|+|+|++||+.++|+|+++.++ |....||
T Consensus 345 -kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~---------------~~~~~e~ 408 (649)
T KOG0496|consen 345 -KYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ---------------WISFTEP 408 (649)
T ss_pred -cccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc---------------cccccCC
Confidence 344444569999999999889999999999999999999999999999999886431 4444455
Q ss_pred cccccCCCccccccchhhcCCCCCCccEEEEEEEeecCCCcccccCCCCceeeeC-CcceEEEEEECCEEEEEEEccccC
Q 006468 239 ISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVE-SAGHAVHVFINGQFLGSAFGTREN 317 (644)
Q Consensus 239 ~~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~-~~~D~a~Vfvng~~vG~~~~~~~~ 317 (644)
++ +|..++ .+||++|++.++.+.+++ ..|+|. +++|++||||||+++|+.+++...
T Consensus 409 ~~-------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~ 465 (649)
T KOG0496|consen 409 IP-------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGHALHVFVNGEFAGSLHGNNEK 465 (649)
T ss_pred Cc-------------cccccC---cceEEEEEEeeccccCCC-------ceEeecccccceEEEEECCEEeeeEeccccc
Confidence 44 566665 788999999998765542 468888 999999999999999999998766
Q ss_pred cceEEeecccccCCCCeEEEEEEecCccccccCCCccccceeecEEEccccCCCccCccCCceEeccCccccccccCCCC
Q 006468 318 RRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSE 397 (644)
Q Consensus 318 ~~~~~~~~~~l~~g~~~L~ILven~Gr~N~G~~~~~~~KGI~G~V~l~g~~~~~~~L~~~~W~~~~~l~ge~~~~~~~~~ 397 (644)
..+.+..++.|..|.|+|+|||||+||+||| +++++.|||+|+|+|+|. ++++++.|.|+++|.+|.+.++..++
T Consensus 466 ~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~ 540 (649)
T KOG0496|consen 466 IKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEG 540 (649)
T ss_pred eeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccceeecceecccccchhhcccccc
Confidence 6677777888999999999999999999999 889999999999999997 46776678899999999999998887
Q ss_pred CCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEEeCCCceEEEEECCeeeeeeeeccccCCCCCCccCCCcCCccc
Q 006468 398 ATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINC 477 (644)
Q Consensus 398 ~~~~~W~~~~~~~~~~~~~~~Yr~~F~~p~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~g~~~~~~~~G~~~~~~~ 477 (644)
..+++|......+. .++.+||+ +|++|++.+||||||.|||||+|||||+|||||||++ |
T Consensus 541 ~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~-----------G------- 600 (649)
T KOG0496|consen 541 SSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF-----------G------- 600 (649)
T ss_pred ccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC-----------C-------
Confidence 78899987654444 36789998 9999999999999999999999999999999999874 6
Q ss_pred cCCCCCCceeeeecCcccccCCcceEEEEEecCCCCcceEEEeeccccccccccc
Q 006468 478 QRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHE 532 (644)
Q Consensus 478 ~~~~~~PQqtlY~VP~~~Lk~g~N~ivvfE~~g~~~~~i~l~~~~~~~~c~~~~e 532 (644)
||++|| ||++|||++.|.||||||++++|..|+|+++.+..+|..+.|
T Consensus 601 ------~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 601 ------PQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred ------CceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 977766 999999999999999999999999999999999999988765
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.96 E-value=3.8e-30 Score=273.13 Aligned_cols=131 Identities=42% Similarity=0.765 Sum_probs=89.4
Q ss_pred cccCCCc-ceEEEecCCC--------CCcccccccCcccccc-----c---CCCCCCCCeeEeeecCccccccCCCCCCC
Q 006468 2 AVGLDTG-VPWVMCKEDD--------APDPVINSCNGFYCDA-----F---SPNKPYKPTLWTEAWSGWFTEFGGAVHRR 64 (644)
Q Consensus 2 a~~~g~~-vP~~~c~~~~--------~~~~~i~t~ng~~~~~-----f---~~~~p~~P~~~~E~~~Gwf~~Wg~~~~~~ 64 (644)
+++.+++ ++.++++.++ ++++.+.+++++.+.+ | .+.+|++|+|++|||+|||++||++++.+
T Consensus 167 ~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~~ 246 (319)
T PF01301_consen 167 YRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGGWFDHWGGPHYTR 246 (319)
T ss_dssp HHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS---BTTS--HHH
T ss_pred HHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEeccccccccCCCCccC
Confidence 3456666 6677776643 2333455666677633 2 35679999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCceeeeeEEeccCCCCCCCCCCcc----cccccCCCCCCcCCCCCchhHHHHHHHHHH
Q 006468 65 PVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFI----TTSYDYDAPLDEYGLMRQPKYGHLKQLHEA 134 (644)
Q Consensus 65 ~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~TSYDy~Apl~E~G~~~~~ky~~lr~~~~~ 134 (644)
++++++..++++++.|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||++||+||++
T Consensus 247 ~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 247 PAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYELRRLHQK 318 (319)
T ss_dssp HHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHHHHHHhc
Confidence 999999999999999965 799999999999999887654 5999999999999999 5999999999875
No 4
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.85 E-value=1.3e-21 Score=195.42 Aligned_cols=91 Identities=31% Similarity=0.629 Sum_probs=84.8
Q ss_pred cCCCCceeeecCCCCeEeeeeeeccCCCC-CCCCCC----CCCCccCCChHHHHHHHcCCCCceEEEecCCCccCCCCCC
Q 006468 550 STGNAKVLLQCAPGQSITSIEFASFGTPS-GTCGSF----QKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPN 624 (644)
Q Consensus 550 ~ce~~~~~L~C~~g~~Is~I~~A~YGr~~-~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~g 624 (644)
+|||+.++|+||.|.+| +|++|+|||.. .+|.+. .+.+|..++++.++.++|+++++|.|.|+..+|+.|||||
T Consensus 40 aCdG~~i~L~CP~~dvI-sv~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPg 118 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVI-SVQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPG 118 (265)
T ss_pred eecCceEEEEcCCCCEE-EEEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCC
Confidence 59999999999999999 59999999994 799752 4789999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeeCCcCC
Q 006468 625 VLKRLSVQAVCSTADAN 641 (644)
Q Consensus 625 ~~KYL~V~Y~C~p~~~~ 641 (644)
|+|||+|+|.|+|.+..
T Consensus 119 T~KYLev~Y~Cvp~~~~ 135 (265)
T KOG4729|consen 119 TSKYLEVQYGCVPYAFT 135 (265)
T ss_pred chhheEEEeccCccccc
Confidence 99999999999998654
No 5
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.81 E-value=1.3e-20 Score=160.77 Aligned_cols=76 Identities=41% Similarity=0.852 Sum_probs=62.2
Q ss_pred eecCCCCeEeeeeeeccCCCC-CCCCCC---CCCCccCCChHHHHHHHcCCCCceEEEecCCCccCCCCCCCCceEEEEE
Q 006468 558 LQCAPGQSITSIEFASFGTPS-GTCGSF---QKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQA 633 (644)
Q Consensus 558 L~C~~g~~Is~I~~A~YGr~~-~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~g~~KYL~V~Y 633 (644)
|+|+.|++| .|.+|+|||+. .+|+.. .+.+|.+++++.+|+++|+||++|+|.+++.+|| ||||++.|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 799999999 69999999996 699743 4678999999999999999999999999999998 99999999999999
Q ss_pred Ee
Q 006468 634 VC 635 (644)
Q Consensus 634 ~C 635 (644)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 6
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.02 E-value=5.9e-10 Score=101.10 Aligned_cols=69 Identities=32% Similarity=0.689 Sum_probs=49.9
Q ss_pred cCCceEEEEEEeCCCCCCceE-EEe--CCCceEEEEECCeeeeeeeeccccCCCCCCccCCCcCCccccCCCCCCceeee
Q 006468 413 QQSLKWYKAYFDAPTGNEPLA-LDL--RSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWY 489 (644)
Q Consensus 413 ~~~~~~Yr~~F~~p~~~d~~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlY 489 (644)
..+..|||++|+.......+. |+. ....+++|||||++|||||+. +| ||++++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----------~g-------------~q~tf~ 88 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----------IG-------------PQTTFS 88 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT-----------TE-------------CCEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC-----------CC-------------ccEEEE
Confidence 457899999996422111233 333 356799999999999999964 46 999999
Q ss_pred ecCcccccCCcceEEEE
Q 006468 490 HVPRSWLKPTKNLLVVF 506 (644)
Q Consensus 490 ~VP~~~Lk~g~N~ivvf 506 (644)
||+++|+.++|.|+|+
T Consensus 89 -~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 89 -VPAGILKYGNNVLVVL 104 (111)
T ss_dssp -E-BTTBTTCEEEEEEE
T ss_pred -eCceeecCCCEEEEEE
Confidence 9999999875555454
No 7
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.58 E-value=3.1e-07 Score=83.35 Aligned_cols=84 Identities=27% Similarity=0.387 Sum_probs=57.7
Q ss_pred hhhcCCCCCCccEEEEEEEeecCCCcccccCCCCce-eeeC-CcceEEEEEECCEEEEEEEccccCcceEEeecc-cccC
Q 006468 254 LEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPT-LTVE-SAGHAVHVFINGQFLGSAFGTRENRRFTFSGPA-NLRA 330 (644)
Q Consensus 254 ~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~-L~v~-~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~-~l~~ 330 (644)
.+..+..++..|++|||++|.....+. ... |.+. +.+.+++|||||+++|+..... ..+.+|++|. .|+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 455555567999999999997543321 123 4444 6899999999999999987322 2234555554 2556
Q ss_pred CCCeEEEEEEecCc
Q 006468 331 GINKIALLSIAVGL 344 (644)
Q Consensus 331 g~~~L~ILven~Gr 344 (644)
+.++|.||+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67889999999995
No 8
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.28 E-value=5.8e-06 Score=79.51 Aligned_cols=99 Identities=24% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEccccCcceEEeecccccCCC-CeEEEEE
Q 006468 261 RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLS 339 (644)
Q Consensus 261 ~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 339 (644)
....|+.|||++|..+... .+....|.+.++.+.+.|||||+++|...+.. ..+.++++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 3478999999999886432 13346789999999999999999999987543 345566555578887 9999999
Q ss_pred EecCccccccCCC-ccccceeecEEEc
Q 006468 340 IAVGLPNVGLHYE-TWETGVRGAVVLH 365 (644)
Q Consensus 340 en~Gr~N~G~~~~-~~~KGI~G~V~l~ 365 (644)
.+...-.+-+.+. ....||.++|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 8655433311111 3468999999884
No 9
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.89 E-value=0.0021 Score=61.75 Aligned_cols=67 Identities=22% Similarity=0.492 Sum_probs=50.4
Q ss_pred cCCceEEEEEEeCCCCC--CceEEEeCCCc-eEEEEECCeeeeeeeeccccCCCCCCccCCCcCCccccCCCCCCceeee
Q 006468 413 QQSLKWYKAYFDAPTGN--EPLALDLRSMG-KGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWY 489 (644)
Q Consensus 413 ~~~~~~Yr~~F~~p~~~--d~~~Ld~~g~g-KG~vwVNG~nlGRYW~~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlY 489 (644)
..+..|||.+|++|... ..++|.+.|.. ...|||||+-||+-... | ..-+ +
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~--------------~-----------~~~~-~ 119 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG--------------Y-----------TPFE-F 119 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEEST--------------T-----------S-EE-E
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCC--------------c-----------CCeE-E
Confidence 34679999999998753 35899999874 99999999999997511 1 2223 4
Q ss_pred ecCcccccCCc-ceEEEE
Q 006468 490 HVPRSWLKPTK-NLLVVF 506 (644)
Q Consensus 490 ~VP~~~Lk~g~-N~ivvf 506 (644)
-|+. .|++|+ |+|.|.
T Consensus 120 dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 120 DITD-YLKPGEENTLAVR 136 (167)
T ss_dssp ECGG-GSSSEEEEEEEEE
T ss_pred eChh-hccCCCCEEEEEE
Confidence 4764 788888 998884
No 10
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.72 E-value=0.0083 Score=69.84 Aligned_cols=100 Identities=22% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEccccCcceEEeecccccCCC-CeEEEEEE
Q 006468 262 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLSI 340 (644)
Q Consensus 262 d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILve 340 (644)
+..|..|||++|.++... .|....|.+.++.-.+.|||||++||...+.. ..+.+++.-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 367899999999876431 13346899999999999999999999876543 345555543466675 49999997
Q ss_pred ecCccc---cccCC-------------C-ccccceeecEEEccc
Q 006468 341 AVGLPN---VGLHY-------------E-TWETGVRGAVVLHGL 367 (644)
Q Consensus 341 n~Gr~N---~G~~~-------------~-~~~KGI~G~V~l~g~ 367 (644)
|.-+.. .|... . -..-||.++|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742210 11000 0 135799999999544
No 11
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.0019 Score=75.04 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=57.9
Q ss_pred CeeEeeecCccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCceeeeeEEeccCCCC------CCCCCC---c-------c
Q 006468 43 PTLWTEAWSGWF-TEFGGAVHRRP-VQDLAFAVARFIQKGGSFFNYYMYHGGTNFG------RTAGGP---F-------I 104 (644)
Q Consensus 43 P~~~~E~~~Gwf-~~Wg~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~-------~ 104 (644)
+....|.+-+|| +.|..+..... .+.-.+.+++.|..... -||||||+|++|+ +.+|+. + +
T Consensus 238 ~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P~ 316 (673)
T COG1874 238 VREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLPS 316 (673)
T ss_pred HHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCcc
Confidence 666778888899 87776554443 33344456677777766 6999999999999 777764 2 5
Q ss_pred cccccCCCCCCcCCCC
Q 006468 105 TTSYDYDAPLDEYGLM 120 (644)
Q Consensus 105 ~TSYDy~Apl~E~G~~ 120 (644)
.+++++.+.+.+.|..
T Consensus 317 ~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 317 VVNWALYNKLKRPGAL 332 (673)
T ss_pred hhhhhhccCCCCCccc
Confidence 8999999999999984
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.38 E-value=0.014 Score=71.89 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=67.1
Q ss_pred cEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEccccCcceEEeecccccCCCCeEEEEEEecCc
Q 006468 265 DYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGL 344 (644)
Q Consensus 265 Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 344 (644)
|-.|||++|.++..- .|....|.+.++...+.|||||++||...+.. ..+.|++.-.|+.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 567999999886431 13346799999999999999999999876533 335555543467788999999975432
Q ss_pred cccccCCC-ccccceeecEEEccc
Q 006468 345 PNVGLHYE-TWETGVRGAVVLHGL 367 (644)
Q Consensus 345 ~N~G~~~~-~~~KGI~G~V~l~g~ 367 (644)
-.|-...+ ....||..+|.|.-.
T Consensus 183 ~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CCccccCCccccccccceEEEEEe
Confidence 22211100 134799999999554
No 13
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.04 E-value=0.027 Score=69.40 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=65.1
Q ss_pred cEEEEEEEeecCCCcccccCCC-CceeeeCCcceEEEEEECCEEEEEEEccccCcceEEeecccccCCCCeEEEEEEecC
Q 006468 265 DYLWYMTSVEISSSESFLRGGQ-KPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVG 343 (644)
Q Consensus 265 Gyl~Y~t~i~~~~~~~~~~~g~-~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~G 343 (644)
+-.|||++|.++..- . +. ...|.+.++.-.+.|||||++||...+.. ..+.|++.-.|+.|.|+|.|.|...-
T Consensus 120 ~~gwYrr~F~vp~~w--~--~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~s 193 (1027)
T PRK09525 120 PTGCYSLTFTVDESW--L--QSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRWS 193 (1027)
T ss_pred CeEEEEEEEEeChhh--c--CCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEecC
Confidence 678999999876431 1 11 35799999999999999999999875432 33555554446788999999885322
Q ss_pred ccccccCCCc----cccceeecEEEccc
Q 006468 344 LPNVGLHYET----WETGVRGAVVLHGL 367 (644)
Q Consensus 344 r~N~G~~~~~----~~KGI~G~V~l~g~ 367 (644)
. |..++. ...||..+|.|.-.
T Consensus 194 d---gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 194 D---GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCccccCCceeeccccceEEEEEc
Confidence 1 222221 34799999998544
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.22 E-value=0.2 Score=61.84 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=33.5
Q ss_pred CceEEEEEEeCCCCCC--ceEEEeCCC-ceEEEEECCeeeeee
Q 006468 415 SLKWYKAYFDAPTGNE--PLALDLRSM-GKGQVWINGQSIGRY 454 (644)
Q Consensus 415 ~~~~Yr~~F~~p~~~d--~~~Ld~~g~-gKG~vwVNG~nlGRY 454 (644)
+..|||.+|++|+..+ -++|.+.|- ....|||||+-+|+-
T Consensus 109 ~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~ 151 (1021)
T PRK10340 109 PTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFS 151 (1021)
T ss_pred CeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccc
Confidence 5689999999997532 489999986 578999999999964
No 15
>PRK10150 beta-D-glucuronidase; Provisional
Probab=93.02 E-value=0.23 Score=57.88 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=34.9
Q ss_pred CCceEEEEEEeCCCCC--CceEEEeCCC-ceEEEEECCeeeeeee
Q 006468 414 QSLKWYKAYFDAPTGN--EPLALDLRSM-GKGQVWINGQSIGRYW 455 (644)
Q Consensus 414 ~~~~~Yr~~F~~p~~~--d~~~Ld~~g~-gKG~vwVNG~nlGRYW 455 (644)
.+..|||.+|++|+.. .-++|.+.|. ....|||||+.||+--
T Consensus 64 ~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~ 108 (604)
T PRK10150 64 VGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHK 108 (604)
T ss_pred cccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEc
Confidence 3678999999998643 2489999987 5899999999999753
No 16
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.06 E-value=0.26 Score=60.88 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCceEEEEEEeCCCCC--C-ceEEEeCCC-ceEEEEECCeeeee
Q 006468 414 QSLKWYKAYFDAPTGN--E-PLALDLRSM-GKGQVWINGQSIGR 453 (644)
Q Consensus 414 ~~~~~Yr~~F~~p~~~--d-~~~Ld~~g~-gKG~vwVNG~nlGR 453 (644)
.+..|||.+|++|+.. . .++|.+.|- ....|||||+-+|.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~ 162 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGY 162 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEe
Confidence 3679999999999642 2 489999986 68999999999995
No 17
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=86.92 E-value=0.94 Score=43.49 Aligned_cols=67 Identities=24% Similarity=0.220 Sum_probs=37.1
Q ss_pred eeeeccCCCCC--CCCCC-----CCCCccCCChHHHHHHHcCCCCceEEEec----CCCccC-CCCC--CCCceEEEEEE
Q 006468 569 IEFASFGTPSG--TCGSF-----QKGTCHAPNSHAMLEKECIGQESCSIFIS----SGVFGT-DPCP--NVLKRLSVQAV 634 (644)
Q Consensus 569 I~~A~YGr~~~--~C~~~-----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~----~~~Fg~-DPC~--g~~KYL~V~Y~ 634 (644)
|..|.||.... .+... ....+..-+.+-.++... +.++-.... ..+.|. |||| |..|.|.|.|.
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV--~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALV--KDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEe--ecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 77899999742 33211 112233334444444333 333322222 123344 9999 88999999998
Q ss_pred eeC
Q 006468 635 CST 637 (644)
Q Consensus 635 C~p 637 (644)
...
T Consensus 133 f~g 135 (151)
T PF11875_consen 133 FRG 135 (151)
T ss_pred ECC
Confidence 754
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=85.90 E-value=2.4 Score=46.43 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=49.6
Q ss_pred CCCCCeeEeeecCccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeEEeccCCCCCCCCCCcccccccCCCCCCcCC
Q 006468 39 KPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYG 118 (644)
Q Consensus 39 ~p~~P~~~~E~~~Gwf~~Wg~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDy~Apl~E~G 118 (644)
.+++|.+++|..+| -..|+.......+..+...+-..++.|+..+.|+=+ ..-.+|.=.. ..+.|+-+|
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg 354 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDG 354 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccC
Confidence 47899999999999 666765555555667777777788999998777666 4444453211 236889999
Q ss_pred -CCCchhHHHHHHHHHHHHh
Q 006468 119 -LMRQPKYGHLKQLHEAIKL 137 (644)
Q Consensus 119 -~~~~~ky~~lr~~~~~~~~ 137 (644)
.+ +.+|.++++++..|+.
T Consensus 355 ~~~-~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 355 REP-TRRYREVAQLGRELKK 373 (374)
T ss_dssp --B--HHHHHHHHHHHHHHT
T ss_pred CCC-CcHHHHHHHHHHHHhc
Confidence 66 7999999999887753
No 19
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=73.93 E-value=4.6 Score=34.78 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=34.0
Q ss_pred eeeeCCcceEEEEEECCEEEEEEEccccCcceEEeecccc-cCCCCeEEEEEEecCcc
Q 006468 289 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANL-RAGINKIALLSIAVGLP 345 (644)
Q Consensus 289 ~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 345 (644)
.|++.+-...++-||||+++|..... ..+.+ .+ ..|.++|.+ ++..|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCC---CeEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 45655556699999999999876543 22333 23 678998877 7777764
No 20
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=70.42 E-value=4.6 Score=39.44 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=28.4
Q ss_pred CCceEEEEECCeeeeeeee-ccccCCCCCCccCCCcCCccccCCCCCCceeeeecCcccccCCcceEEEEEecC
Q 006468 438 SMGKGQVWINGQSIGRYWM-AYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELG 510 (644)
Q Consensus 438 g~gKG~vwVNG~nlGRYW~-~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlY~VP~~~Lk~g~N~ivvfE~~g 510 (644)
.-++=+|.||| ..+..+. ..+. +.|.++++ +-.|..+.--+.||+.+|++|.|+|.|--..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~---d~~~~r~g-------~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGN---DNAIYRSG-------IHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccCC---CCceeeCc-------eecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34677899999 7777663 1211 22333331 12234555556799999999999998744444
No 21
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=67.40 E-value=14 Score=30.24 Aligned_cols=24 Identities=17% Similarity=0.545 Sum_probs=20.7
Q ss_pred CcceEEEEEECCEEEEEEEccccC
Q 006468 294 SAGHAVHVFINGQFLGSAFGTREN 317 (644)
Q Consensus 294 ~~~D~a~Vfvng~~vG~~~~~~~~ 317 (644)
+..|.|.||++++|+|++++....
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 578999999999999999986543
No 22
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=66.07 E-value=5.2 Score=32.71 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=28.8
Q ss_pred eeeeCCcceEEEEEECCEEEEEEEccccCcceEEeecccccCCCCeEEEEEEecCcccc
Q 006468 289 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNV 347 (644)
Q Consensus 289 ~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N~ 347 (644)
.|.|...-..|.|||||+++|... ..+. .+..|.++|.| +.-|...+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~~ 49 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEPY 49 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCeeE
Confidence 466666667889999999999431 2221 14567665544 55554433
No 23
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=64.38 E-value=9.3 Score=37.24 Aligned_cols=53 Identities=23% Similarity=0.560 Sum_probs=31.9
Q ss_pred EEEeCCCceEEEEECCeeeeeeeeccccCCCCCCccCCCcCCccccCCCCCCceeeeecC---cccccCCcceEEEE
Q 006468 433 ALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVP---RSWLKPTKNLLVVF 506 (644)
Q Consensus 433 ~Ld~~g~gKG~vwVNG~nlGRYW~~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlY~VP---~~~Lk~g~N~ivvf 506 (644)
.|.+++.|+=.+||||+.+|+--.. .|. -.| +...+| .- .++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~--P~~-------t~y-----------~~~~~Y-~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA--PGW-------TDY-----------DKRVYY-QTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-----------------B-----------TTEEEE-EEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc--ccc-------ccC-----------CCceEE-EEEeChHHhCCCCCEEEEE
Confidence 4677778888999999999975311 110 011 332333 33 67999999999884
No 24
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=63.06 E-value=9.1 Score=39.73 Aligned_cols=87 Identities=9% Similarity=-0.094 Sum_probs=63.4
Q ss_pred CCCCceeeecCCCCeEeeeeeeccCCCC---CCCCCC----CCCCccCCChHHHHHHHcCCCCceEEEecCCCccCCCCC
Q 006468 551 TGNAKVLLQCAPGQSITSIEFASFGTPS---GTCGSF----QKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCP 623 (644)
Q Consensus 551 ce~~~~~L~C~~g~~Is~I~~A~YGr~~---~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~ 623 (644)
|..+++..-|+....+ .++.+.+++.+ ..|..- ....|.....+..+...|.+++.|.+..++.-++ -+|-
T Consensus 140 ~~p~~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~ 217 (265)
T KOG4729|consen 140 CTPSPTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHG 217 (265)
T ss_pred ecCCCCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-cccc
Confidence 6666777777777666 67777777763 455431 2333434467788899999999999999999988 5664
Q ss_pred -CCCceEEEEEEeeCCc
Q 006468 624 -NVLKRLSVQAVCSTAD 639 (644)
Q Consensus 624 -g~~KYL~V~Y~C~p~~ 639 (644)
+..+|+-|.+.|.+..
T Consensus 218 ~~~~~~~~~n~e~~~~~ 234 (265)
T KOG4729|consen 218 HLHKVYVTVTEEIFSEE 234 (265)
T ss_pred ceeEEEEEecccccchh
Confidence 4568999999987653
No 25
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=63.02 E-value=13 Score=38.93 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=42.4
Q ss_pred ccchhhcCCC---CCCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEE
Q 006468 251 IGLLEQINIT---RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSA 311 (644)
Q Consensus 251 ~~~~Eql~~t---~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~ 311 (644)
|.++-.+++. +|.+|.+||+.++.++.+.. ...+....|++.++|-.|.|+|||.-+=..
T Consensus 71 pss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h 133 (297)
T KOG2024|consen 71 PSSFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEH 133 (297)
T ss_pred ccchhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeeccc
Confidence 3445555553 57889999999998774431 122334678999999999999998765443
No 26
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=59.87 E-value=40 Score=32.79 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=30.9
Q ss_pred eeeeCCcceEEEEEECCEEEEEEEc-----cccCc--ceEEeecccccCCCCeEEEEEEecCcc
Q 006468 289 TLTVESAGHAVHVFINGQFLGSAFG-----TRENR--RFTFSGPANLRAGINKIALLSIAVGLP 345 (644)
Q Consensus 289 ~L~v~~~~D~a~Vfvng~~vG~~~~-----~~~~~--~~~~~~~~~l~~g~~~L~ILven~Gr~ 345 (644)
.|.|... .+..+||||+.||...- ....+ -.++++.--|+.|.|+|.|++-+....
T Consensus 7 ~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~ 69 (172)
T PF08531_consen 7 RLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYN 69 (172)
T ss_dssp EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S-
T ss_pred EEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccc
Confidence 4555433 46789999999997541 11111 123444435788999999999775433
No 27
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=53.49 E-value=69 Score=29.26 Aligned_cols=70 Identities=16% Similarity=0.323 Sum_probs=41.6
Q ss_pred EEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEcccc-----CcceEEeecccccCC-CCeEEEEE
Q 006468 266 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRE-----NRRFTFSGPANLRAG-INKIALLS 339 (644)
Q Consensus 266 yl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 339 (644)
.+.|++.|..+.+..+ .+.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 5668888887655422 33333 7889999999999977664321 001111223345444 67787766
Q ss_pred EecC
Q 006468 340 IAVG 343 (644)
Q Consensus 340 en~G 343 (644)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 6555
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=53.07 E-value=61 Score=39.40 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=32.8
Q ss_pred cCCceEEEEEEeCCCCCC------ceEEEeCCCc-eEEEEECCeeeeeee
Q 006468 413 QQSLKWYKAYFDAPTGNE------PLALDLRSMG-KGQVWINGQSIGRYW 455 (644)
Q Consensus 413 ~~~~~~Yr~~F~~p~~~d------~~~Ld~~g~g-KG~vwVNG~nlGRYW 455 (644)
..+..||+++|+++.... ...|.+.+.+ +.+|||||.-+|.-+
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 346899999999865421 1247777775 799999999999875
No 29
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=41.10 E-value=7.2 Score=45.38 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=60.9
Q ss_pred cccccccccccCCCCCCCcccccCCCCCcCCCCceeee-cCCCCeEeeeeeeccCCCCCCCCCCCCCCccCCChHHHHHH
Q 006468 522 SVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQ-CAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEK 600 (644)
Q Consensus 522 ~~~~~c~~~~e~~p~~~~~~~~~~~~~~~ce~~~~~L~-C~~g~~Is~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~ 600 (644)
+++-+|.+-.+.|..++ ...+. |.++.++..|..|.||...+.|+.+...+|.++.+...+..
T Consensus 309 p~dgl~~~pk~ghlk~~----------------hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~ 372 (649)
T KOG0496|consen 309 PLDGLLRQPKYGHLKPL----------------HTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNK 372 (649)
T ss_pred ccchhhcCCCccccccc----------------hhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCC
Confidence 34456666666665443 12233 44677888889999999988999998899999999989999
Q ss_pred HcCCCCceEEEecCCCc
Q 006468 601 ECIGQESCSIFISSGVF 617 (644)
Q Consensus 601 ~C~Gk~~C~v~a~~~~F 617 (644)
.+-.+..|+|....+.+
T Consensus 373 ~~y~~~~~slsilpdck 389 (649)
T KOG0496|consen 373 PKYRLPPWSLSILPDCK 389 (649)
T ss_pred CccccCceeEEechhhc
Confidence 99999999998865443
No 30
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=25.99 E-value=59 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.661 Sum_probs=14.4
Q ss_pred ceEEEEECCeeeeeee
Q 006468 440 GKGQVWINGQSIGRYW 455 (644)
Q Consensus 440 gKG~vwVNG~nlGRYW 455 (644)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 6799999999999973
No 31
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=22.48 E-value=1.8e+02 Score=33.40 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCCCCCCeeEeeecCccccccCCCCCC---CCHHHHHHHHHHHHHhCCceeeeeEE------eccCCCCCC-CCCCcccc
Q 006468 37 PNKPYKPTLWTEAWSGWFTEFGGAVHR---RPVQDLAFAVARFIQKGGSFFNYYMY------HGGTNFGRT-AGGPFITT 106 (644)
Q Consensus 37 ~~~p~~P~~~~E~~~Gwf~~Wg~~~~~---~~~~~~~~~~~~~l~~g~s~~n~YM~------hGGTNfG~~-~G~~~~~T 106 (644)
+.+|+..++.||-..|.. .|+..... ..++..+..+..-|.++++ ++-+| .||-|++.. ..++.++.
T Consensus 325 ~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw~~WNl~LD~~GGP~~~~n~~d~~iivd 401 (496)
T PF02055_consen 325 NKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GWIDWNLALDENGGPNWVGNFCDAPIIVD 401 (496)
T ss_dssp HHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EEEEEESEBETTS---TT---B--SEEEE
T ss_pred HHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--eeeeeeeecCCCCCCcccCCCCCceeEEE
Confidence 567999999999976542 22211111 1123344444455666654 33333 588888632 11222111
Q ss_pred cccCCCCCCcCCCCCchhHHHHHHHHHHHHhhhccccCCCCcccCCCccceeeeeccCCcceeeEeeccCC
Q 006468 107 SYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNT 177 (644)
Q Consensus 107 SYDy~Apl~E~G~~~~~ky~~lr~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~Fl~n~~~ 177 (644)
=+. +|. ..+|.|+.|....+|++.-...+-.. ........+..+|...++..++-|.|...
T Consensus 402 -~~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~vAF~nPDGs~vvVv~N~~~ 462 (496)
T PF02055_consen 402 -SDT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEAVAFLNPDGSIVVVVLNRGD 462 (496)
T ss_dssp -GGG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEEEEEEETTSEEEEEEEE-SS
T ss_pred -cCC----CeE--EEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeEEEEECCCCCEEEEEEcCCC
Confidence 111 111 12689999998888776432222110 00001134455566666666666666543
No 32
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=22.07 E-value=2.8e+02 Score=25.17 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=0.0
Q ss_pred EEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEccccCcceEEeecccccCC-CCeEEEEEEe
Q 006468 267 LWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAG-INKIALLSIA 341 (644)
Q Consensus 267 l~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g-~~~L~ILven 341 (644)
+.+++.|..+.+..+ .+.+ ...|.+.+||||+.+-...+... ........+.|.+| .+.|.|....
T Consensus 46 ~~~~g~i~~~~~G~y-------~f~~-~~~~~~~l~Idg~~vid~~~~~~-~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 46 VRWTGYLKPPEDGEY-------TFSI-TSDDGARLWIDGKLVIDNWGKHE-ARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEEEEEEECCCCccE-------EEEE-EcCCcEEEEECCcEEEcCCccCC-CccccceeEEEeCCcEEEEEEEEEe
No 33
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=20.84 E-value=3.3e+02 Score=24.78 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=27.8
Q ss_pred CCcceEEEEEECCEEEEEEEccccCcceEEeecccccCCCCeEEE-EEEecC
Q 006468 293 ESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIAL-LSIAVG 343 (644)
Q Consensus 293 ~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~I-Lven~G 343 (644)
.+.+|.++|++||+.+-+-.........+|.. -+.|...++| |+..-|
T Consensus 45 G~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~v---~kgG~y~m~V~lCn~dG 93 (106)
T cd02848 45 GDPGDTYKVLLDGKEVWSGALTGSSGTATFKV---GKGGRYQMQVALCNGDG 93 (106)
T ss_pred CCCCcEEEEEECCeEEEcccCCCCccEEEEEe---CCCCeEEEEEEEECCCC
Confidence 56899999999998874433221111233332 2345666766 555555
Done!