Query 006469
Match_columns 644
No_of_seqs 186 out of 317
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 23:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0963 Transcription factor/C 100.0 4E-109 8E-114 894.2 57.5 598 17-644 1-603 (629)
2 PF08172 CASP_C: CASP C termin 100.0 3.3E-52 7.1E-57 422.1 21.2 212 432-644 1-226 (248)
3 KOG0971 Microtubule-associated 99.3 7.7E-09 1.7E-13 117.1 34.8 300 95-445 176-490 (1243)
4 PRK02224 chromosome segregatio 99.0 0.00012 2.5E-09 88.7 54.8 104 409-545 537-640 (880)
5 TIGR02169 SMC_prok_A chromosom 99.0 2.4E-05 5.1E-10 97.0 49.1 23 581-603 528-550 (1164)
6 TIGR00606 rad50 rad50. This fa 98.9 0.00018 3.8E-09 90.6 51.8 43 20-64 561-603 (1311)
7 PRK02224 chromosome segregatio 98.9 0.0007 1.5E-08 82.0 57.4 205 251-465 412-634 (880)
8 PRK03918 chromosome segregatio 98.9 0.00091 2E-08 81.0 55.3 29 250-278 458-486 (880)
9 PF00038 Filament: Intermediat 98.9 3.7E-05 8E-10 81.7 37.8 287 143-465 3-304 (312)
10 PF10174 Cast: RIM-binding pro 98.8 0.0014 3E-08 77.2 49.7 112 252-380 288-399 (775)
11 TIGR00606 rad50 rad50. This fa 98.8 0.0027 5.8E-08 80.1 56.1 42 501-542 1051-1092(1311)
12 KOG0161 Myosin class II heavy 98.7 0.0021 4.5E-08 81.5 51.1 109 406-546 1432-1540(1930)
13 PF07888 CALCOCO1: Calcium bin 98.7 0.0005 1.1E-08 77.1 41.0 181 247-466 279-460 (546)
14 KOG0161 Myosin class II heavy 98.7 0.0039 8.4E-08 79.2 52.1 47 412-458 1241-1287(1930)
15 KOG0963 Transcription factor/C 98.7 9.8E-05 2.1E-09 82.6 34.1 298 144-465 121-432 (629)
16 TIGR02169 SMC_prok_A chromosom 98.6 0.00069 1.5E-08 84.1 45.1 16 12-27 30-45 (1164)
17 PF10174 Cast: RIM-binding pro 98.6 0.0042 9.2E-08 73.2 48.0 32 512-543 570-601 (775)
18 KOG4674 Uncharacterized conser 98.6 0.0078 1.7E-07 75.4 50.0 401 87-555 32-491 (1822)
19 TIGR02168 SMC_prok_B chromosom 98.6 0.002 4.3E-08 79.9 45.9 20 611-630 1085-1104(1179)
20 TIGR02168 SMC_prok_B chromosom 98.5 0.0041 8.9E-08 77.2 46.7 15 585-599 530-544 (1179)
21 COG1196 Smc Chromosome segrega 98.5 0.0048 1E-07 77.0 45.6 95 501-603 443-544 (1163)
22 KOG4674 Uncharacterized conser 98.4 0.018 4E-07 72.3 53.6 96 192-287 1086-1203(1822)
23 PF00038 Filament: Intermediat 98.3 0.0015 3.3E-08 69.4 32.5 108 402-551 188-295 (312)
24 PF12128 DUF3584: Protein of u 98.3 0.03 6.4E-07 70.3 51.4 37 252-288 498-534 (1201)
25 PRK03918 chromosome segregatio 98.3 0.025 5.5E-07 68.5 54.2 17 611-627 784-800 (880)
26 KOG0977 Nuclear envelope prote 98.3 0.0044 9.5E-08 69.7 34.5 141 143-288 41-192 (546)
27 PF00261 Tropomyosin: Tropomyo 98.3 0.0011 2.4E-08 68.0 27.8 148 204-379 84-232 (237)
28 PF12128 DUF3584: Protein of u 98.2 0.048 1E-06 68.4 48.9 378 140-546 242-649 (1201)
29 COG1196 Smc Chromosome segrega 98.2 0.048 1E-06 68.3 46.6 41 247-287 810-850 (1163)
30 KOG4643 Uncharacterized coiled 98.2 0.032 7E-07 65.7 46.7 409 32-557 178-603 (1195)
31 PF05701 WEMBL: Weak chloropla 98.1 0.031 6.7E-07 63.9 45.4 294 211-546 115-414 (522)
32 KOG0976 Rho/Rac1-interacting s 98.0 0.04 8.6E-07 63.4 34.9 45 243-287 154-198 (1265)
33 KOG0996 Structural maintenance 98.0 0.099 2.1E-06 62.9 43.8 166 257-464 404-569 (1293)
34 PRK01156 chromosome segregatio 97.9 0.13 2.9E-06 62.6 53.4 35 251-285 409-443 (895)
35 KOG0933 Structural maintenance 97.8 0.16 3.5E-06 60.2 41.7 37 134-170 681-717 (1174)
36 PRK04863 mukB cell division pr 97.8 0.29 6.3E-06 62.2 45.8 22 581-602 688-710 (1486)
37 KOG0612 Rho-associated, coiled 97.7 0.16 3.4E-06 61.5 35.1 116 403-536 668-788 (1317)
38 PRK04863 mukB cell division pr 97.7 0.18 3.9E-06 64.1 37.8 318 82-465 786-1116(1486)
39 PF15070 GOLGA2L5: Putative go 97.7 0.2 4.3E-06 58.2 43.0 145 138-287 161-315 (617)
40 KOG0971 Microtubule-associated 97.7 0.18 3.9E-06 59.0 34.0 59 407-465 484-546 (1243)
41 KOG1937 Uncharacterized conser 97.6 0.15 3.2E-06 55.7 30.9 191 88-288 190-382 (521)
42 KOG0977 Nuclear envelope prote 97.6 0.032 6.9E-07 63.0 26.6 84 79-162 110-194 (546)
43 PF07888 CALCOCO1: Calcium bin 97.6 0.23 4.9E-06 56.3 44.2 58 407-464 348-405 (546)
44 PRK11281 hypothetical protein; 97.6 0.15 3.2E-06 62.9 33.6 180 252-453 150-329 (1113)
45 PHA02562 46 endonuclease subun 97.6 0.044 9.5E-07 63.0 27.9 52 403-455 353-404 (562)
46 PF09787 Golgin_A5: Golgin sub 97.5 0.3 6.6E-06 55.8 36.8 35 610-644 470-505 (511)
47 PF05557 MAD: Mitotic checkpoi 97.5 6.2E-05 1.3E-09 89.1 3.6 200 251-465 209-413 (722)
48 PF09726 Macoilin: Transmembra 97.5 0.12 2.6E-06 60.8 29.8 60 407-466 599-658 (697)
49 PF05701 WEMBL: Weak chloropla 97.5 0.36 7.9E-06 55.3 49.0 59 506-564 388-446 (522)
50 PHA02562 46 endonuclease subun 97.4 0.22 4.8E-06 57.2 31.9 66 209-285 217-282 (562)
51 PF15070 GOLGA2L5: Putative go 97.4 0.38 8.3E-06 55.9 33.2 34 432-465 281-314 (617)
52 PF01576 Myosin_tail_1: Myosin 97.4 3.4E-05 7.3E-10 92.6 0.0 49 209-257 275-323 (859)
53 PF09730 BicD: Microtubule-ass 97.3 0.53 1.2E-05 55.3 32.8 235 204-466 26-322 (717)
54 KOG0250 DNA repair protein RAD 97.3 0.57 1.2E-05 56.5 33.2 16 587-602 507-522 (1074)
55 KOG0250 DNA repair protein RAD 97.3 0.48 1E-05 57.1 31.5 179 134-334 232-424 (1074)
56 COG1579 Zn-ribbon protein, pos 97.2 0.16 3.5E-06 51.9 24.0 130 209-373 56-185 (239)
57 KOG4593 Mitotic checkpoint pro 97.2 0.67 1.4E-05 53.4 40.7 45 517-561 383-427 (716)
58 PF09726 Macoilin: Transmembra 97.2 0.16 3.4E-06 59.9 27.1 104 261-381 541-658 (697)
59 PF01576 Myosin_tail_1: Myosin 97.2 7.9E-05 1.7E-09 89.5 0.0 59 54-112 178-238 (859)
60 PF00261 Tropomyosin: Tropomyo 97.2 0.34 7.4E-06 49.7 30.2 13 367-379 114-126 (237)
61 PF14915 CCDC144C: CCDC144C pr 97.2 0.39 8.4E-06 50.2 34.6 47 242-288 61-107 (305)
62 PF05911 DUF869: Plant protein 97.2 0.88 1.9E-05 54.1 38.4 158 188-378 68-226 (769)
63 KOG0996 Structural maintenance 97.2 1 2.3E-05 54.6 54.3 62 28-92 320-383 (1293)
64 KOG0964 Structural maintenance 97.1 1 2.2E-05 53.7 37.8 252 237-546 244-495 (1200)
65 PF05557 MAD: Mitotic checkpoi 97.1 0.0035 7.6E-08 74.4 12.7 105 429-551 502-625 (722)
66 PRK11637 AmiB activator; Provi 97.1 0.22 4.9E-06 55.5 26.1 15 346-360 106-120 (428)
67 KOG1003 Actin filament-coating 97.1 0.33 7.2E-06 47.6 24.0 123 136-288 3-125 (205)
68 KOG4673 Transcription factor T 97.1 0.91 2E-05 52.0 43.9 186 90-283 545-743 (961)
69 KOG0612 Rho-associated, coiled 97.0 1.6 3.4E-05 53.3 39.2 40 61-102 443-485 (1317)
70 PRK11637 AmiB activator; Provi 96.9 1.1 2.5E-05 49.9 28.9 43 418-460 186-228 (428)
71 KOG0994 Extracellular matrix g 96.7 2.2 4.8E-05 51.7 34.4 116 415-562 1555-1670(1758)
72 KOG0933 Structural maintenance 96.7 2.3 5E-05 51.0 38.4 258 141-457 681-940 (1174)
73 PF08317 Spc7: Spc7 kinetochor 96.6 1.3 2.9E-05 47.6 28.2 37 82-118 68-104 (325)
74 PF05622 HOOK: HOOK protein; 96.6 0.0005 1.1E-08 81.3 0.0 64 401-464 579-649 (713)
75 PRK01156 chromosome segregatio 96.6 2.9 6.2E-05 51.2 53.4 38 506-543 683-720 (895)
76 PRK04778 septation ring format 96.6 2.2 4.8E-05 49.5 47.2 30 217-246 138-167 (569)
77 TIGR03185 DNA_S_dndD DNA sulfu 96.5 2.7 5.9E-05 49.5 41.6 36 413-448 432-467 (650)
78 PF13514 AAA_27: AAA domain 96.5 4.1 8.9E-05 51.1 51.0 194 79-289 561-774 (1111)
79 PRK11281 hypothetical protein; 96.4 4 8.7E-05 50.8 34.6 26 354-379 341-366 (1113)
80 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.34 7.4E-06 45.1 17.6 69 209-284 63-131 (132)
81 KOG0962 DNA repair protein RAD 96.4 4 8.8E-05 50.6 41.7 82 81-168 690-771 (1294)
82 PF09755 DUF2046: Uncharacteri 96.4 1.7 3.7E-05 46.0 32.1 110 262-376 182-292 (310)
83 KOG4673 Transcription factor T 96.4 2.8 6.1E-05 48.2 52.3 65 254-346 608-672 (961)
84 KOG0995 Centromere-associated 96.2 3 6.6E-05 47.3 40.9 37 247-283 290-326 (581)
85 KOG0976 Rho/Rac1-interacting s 96.1 4.2 9.1E-05 47.6 38.4 43 406-448 274-316 (1265)
86 PRK10698 phage shock protein P 96.0 1.5 3.2E-05 44.6 21.1 41 109-155 16-56 (222)
87 TIGR02977 phageshock_pspA phag 96.0 2.1 4.6E-05 43.3 22.9 40 110-155 17-56 (219)
88 KOG4643 Uncharacterized coiled 95.9 5.7 0.00012 47.8 49.1 214 24-244 50-296 (1195)
89 KOG0994 Extracellular matrix g 95.9 6.4 0.00014 48.0 45.2 60 30-89 1252-1311(1758)
90 PF08317 Spc7: Spc7 kinetochor 95.9 0.33 7.1E-06 52.2 16.7 127 251-381 163-291 (325)
91 TIGR01005 eps_transp_fam exopo 95.8 1.4 3E-05 52.8 23.2 36 250-285 236-271 (754)
92 PF05010 TACC: Transforming ac 95.8 2.5 5.5E-05 42.5 27.7 184 140-357 12-196 (207)
93 KOG0978 E3 ubiquitin ligase in 95.8 5.7 0.00012 46.6 40.9 38 76-113 312-349 (698)
94 PF15619 Lebercilin: Ciliary p 95.8 2.4 5.2E-05 42.2 23.5 179 249-450 10-191 (194)
95 PF05622 HOOK: HOOK protein; 95.7 0.0028 6E-08 75.1 0.0 44 503-546 480-523 (713)
96 KOG0999 Microtubule-associated 95.6 5.3 0.00012 45.0 43.7 61 404-464 313-373 (772)
97 PF09730 BicD: Microtubule-ass 95.5 7.3 0.00016 46.1 43.1 31 407-437 357-387 (717)
98 PF14662 CCDC155: Coiled-coil 95.5 2.9 6.3E-05 41.2 23.9 129 310-463 14-142 (193)
99 PF15619 Lebercilin: Ciliary p 95.4 3.2 6.9E-05 41.4 23.2 89 196-287 66-154 (194)
100 PRK09039 hypothetical protein; 95.2 2.6 5.6E-05 45.7 20.8 21 135-155 44-64 (343)
101 PF13851 GAS: Growth-arrest sp 95.2 3.8 8.2E-05 41.0 21.2 149 81-243 26-174 (201)
102 PF05667 DUF812: Protein of un 95.1 9.2 0.0002 44.6 29.1 95 214-326 389-483 (594)
103 KOG1029 Endocytic adaptor prot 95.0 9.7 0.00021 44.7 30.9 108 254-372 482-598 (1118)
104 PF05667 DUF812: Protein of un 94.9 10 0.00022 44.2 27.0 39 426-464 443-481 (594)
105 PRK10929 putative mechanosensi 94.9 14 0.00031 46.0 39.6 23 354-376 321-343 (1109)
106 KOG0980 Actin-binding protein 94.9 5.6 0.00012 47.2 22.8 151 307-466 329-481 (980)
107 PRK09039 hypothetical protein; 94.8 2.2 4.7E-05 46.4 18.7 65 251-326 123-187 (343)
108 PF04012 PspA_IM30: PspA/IM30 94.7 4.7 0.0001 40.7 19.9 26 253-278 160-185 (221)
109 COG1579 Zn-ribbon protein, pos 94.6 3.4 7.4E-05 42.4 18.3 118 138-262 39-160 (239)
110 PF12718 Tropomyosin_1: Tropom 94.5 4 8.6E-05 38.7 17.5 25 260-284 75-99 (143)
111 PF15254 CCDC14: Coiled-coil d 94.5 8.2 0.00018 45.4 22.9 103 203-330 453-555 (861)
112 TIGR03017 EpsF chain length de 94.5 7.3 0.00016 43.4 22.8 23 49-71 70-92 (444)
113 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.3 1.6 3.5E-05 40.6 14.2 73 215-287 20-95 (132)
114 PF06160 EzrA: Septation ring 94.2 14 0.0003 42.8 46.5 68 216-283 133-212 (560)
115 PF04849 HAP1_N: HAP1 N-termin 94.2 9.1 0.0002 40.6 24.9 84 204-288 96-190 (306)
116 PRK04778 septation ring format 94.1 15 0.00032 42.7 48.9 51 410-460 384-434 (569)
117 TIGR03007 pepcterm_ChnLen poly 94.1 5 0.00011 45.6 20.5 36 248-283 201-236 (498)
118 KOG0946 ER-Golgi vesicle-tethe 93.9 8.3 0.00018 45.5 21.3 121 317-451 652-772 (970)
119 TIGR02680 conserved hypothetic 93.9 27 0.00057 45.0 32.3 27 501-527 1083-1109(1353)
120 smart00787 Spc7 Spc7 kinetocho 93.8 2.5 5.4E-05 45.2 16.3 120 255-381 162-286 (312)
121 COG0419 SbcC ATPase involved i 93.8 22 0.00048 43.7 56.0 37 599-636 800-837 (908)
122 PF10473 CENP-F_leu_zip: Leuci 93.7 6.5 0.00014 37.1 18.6 11 310-320 93-103 (140)
123 PF07111 HCR: Alpha helical co 93.6 18 0.0004 42.2 41.0 273 134-440 328-620 (739)
124 PRK10929 putative mechanosensi 93.5 26 0.00057 43.8 37.8 48 407-454 263-310 (1109)
125 PF09728 Taxilin: Myosin-like 93.5 12 0.00027 39.9 33.6 138 313-467 130-267 (309)
126 KOG0980 Actin-binding protein 93.5 22 0.00047 42.6 30.8 135 221-359 412-549 (980)
127 PF13851 GAS: Growth-arrest sp 93.4 5.4 0.00012 40.0 17.0 20 263-282 141-160 (201)
128 PF14662 CCDC155: Coiled-coil 93.4 8.8 0.00019 37.9 25.4 31 251-281 109-139 (193)
129 COG1842 PspA Phage shock prote 93.4 10 0.00022 38.7 19.3 41 109-155 16-56 (225)
130 PF04849 HAP1_N: HAP1 N-termin 93.1 14 0.0003 39.3 21.4 33 403-436 162-194 (306)
131 KOG0946 ER-Golgi vesicle-tethe 93.1 24 0.00052 41.9 32.4 57 405-461 893-949 (970)
132 PF10481 CENP-F_N: Cenp-F N-te 92.8 11 0.00024 39.1 18.0 112 407-546 79-190 (307)
133 PF10473 CENP-F_leu_zip: Leuci 92.8 6.1 0.00013 37.3 15.2 52 412-463 13-64 (140)
134 KOG2991 Splicing regulator [RN 92.7 13 0.00029 38.1 20.2 179 301-537 133-311 (330)
135 KOG4593 Mitotic checkpoint pro 92.7 25 0.00053 41.1 43.7 101 207-330 192-294 (716)
136 TIGR03007 pepcterm_ChnLen poly 92.6 22 0.00048 40.3 25.2 22 264-285 274-295 (498)
137 PF10212 TTKRSYEDQ: Predicted 92.4 4.9 0.00011 45.4 16.4 89 249-362 418-506 (518)
138 COG5185 HEC1 Protein involved 92.2 23 0.00049 39.5 35.2 127 101-236 229-361 (622)
139 KOG0999 Microtubule-associated 91.8 27 0.00059 39.6 38.0 48 507-554 314-361 (772)
140 TIGR01843 type_I_hlyD type I s 91.7 24 0.00051 38.7 24.2 15 589-603 400-414 (423)
141 PF15035 Rootletin: Ciliary ro 91.5 15 0.00033 36.2 18.0 38 251-288 60-97 (182)
142 TIGR03185 DNA_S_dndD DNA sulfu 91.5 35 0.00077 40.3 40.5 73 209-288 220-292 (650)
143 KOG4807 F-actin binding protei 90.9 27 0.00059 38.0 26.6 28 21-48 32-59 (593)
144 PF12718 Tropomyosin_1: Tropom 90.9 15 0.00032 34.8 15.7 53 407-459 19-71 (143)
145 PF08614 ATG16: Autophagy prot 90.9 3.4 7.3E-05 41.1 12.0 34 250-283 150-183 (194)
146 PF00769 ERM: Ezrin/radixin/mo 90.6 16 0.00035 37.7 17.1 24 406-429 179-202 (246)
147 PF10168 Nup88: Nuclear pore c 90.6 39 0.00085 40.4 22.3 34 249-282 637-670 (717)
148 PF08614 ATG16: Autophagy prot 90.4 2.7 5.9E-05 41.7 10.9 57 407-463 128-184 (194)
149 PF00769 ERM: Ezrin/radixin/mo 90.3 19 0.00042 37.2 17.3 121 309-464 10-130 (246)
150 PF12329 TMF_DNA_bd: TATA elem 90.1 3 6.5E-05 34.9 9.2 69 301-375 2-70 (74)
151 PF09728 Taxilin: Myosin-like 90.1 29 0.00064 37.1 37.0 61 403-464 246-306 (309)
152 COG4372 Uncharacterized protei 89.6 35 0.00077 37.2 28.1 19 214-232 76-94 (499)
153 PF09789 DUF2353: Uncharacteri 89.5 33 0.00072 36.8 31.6 87 201-287 75-162 (319)
154 TIGR01000 bacteriocin_acc bact 89.2 43 0.00093 37.7 23.2 103 255-360 94-196 (457)
155 PF14915 CCDC144C: CCDC144C pr 89.1 33 0.00072 36.2 37.9 22 516-537 276-297 (305)
156 smart00787 Spc7 Spc7 kinetocho 89.1 36 0.00077 36.5 27.8 220 82-347 63-282 (312)
157 COG0419 SbcC ATPase involved i 88.8 68 0.0015 39.5 57.4 56 506-561 690-748 (908)
158 PF12777 MT: Microtubule-bindi 88.2 42 0.00092 36.3 20.0 58 407-464 219-276 (344)
159 PF12795 MscS_porin: Mechanose 87.8 35 0.00075 35.0 18.9 171 351-541 39-215 (240)
160 PF15066 CAGE1: Cancer-associa 87.5 53 0.0011 36.7 24.9 34 209-242 394-427 (527)
161 PF04156 IncA: IncA protein; 87.1 25 0.00054 34.5 15.2 55 506-560 132-186 (191)
162 KOG0982 Centrosomal protein Nu 87.1 54 0.0012 36.3 22.7 54 412-465 335-388 (502)
163 KOG0979 Structural maintenance 87.0 84 0.0018 38.5 29.9 212 71-289 120-356 (1072)
164 PRK10884 SH3 domain-containing 86.9 4.6 0.0001 40.6 9.8 59 262-327 90-148 (206)
165 PF15450 DUF4631: Domain of un 86.6 64 0.0014 36.7 28.6 198 157-360 297-503 (531)
166 COG2433 Uncharacterized conser 86.3 42 0.0009 38.8 17.7 34 62-96 330-363 (652)
167 PF09755 DUF2046: Uncharacteri 86.2 51 0.0011 35.1 34.5 26 407-432 227-252 (310)
168 PF05384 DegS: Sensor protein 85.8 35 0.00076 33.0 18.7 122 137-273 27-155 (159)
169 TIGR01843 type_I_hlyD type I s 85.8 59 0.0013 35.6 22.4 26 210-235 149-174 (423)
170 KOG0995 Centromere-associated 85.8 73 0.0016 36.6 41.9 30 244-273 339-368 (581)
171 PF06160 EzrA: Septation ring 85.6 78 0.0017 36.8 46.3 129 402-555 372-501 (560)
172 PF11559 ADIP: Afadin- and alp 85.6 29 0.00063 32.8 14.2 76 248-341 63-138 (151)
173 KOG1899 LAR transmembrane tyro 85.0 81 0.0018 36.6 18.9 13 367-379 306-318 (861)
174 KOG0018 Structural maintenance 84.9 1.1E+02 0.0024 37.8 36.3 63 401-464 395-457 (1141)
175 KOG0964 Structural maintenance 84.8 1E+02 0.0023 37.6 43.4 106 246-362 392-500 (1200)
176 COG2433 Uncharacterized conser 84.7 44 0.00096 38.6 16.9 18 160-177 351-368 (652)
177 PF10224 DUF2205: Predicted co 84.3 5.7 0.00012 33.8 7.6 51 507-564 12-62 (80)
178 COG1340 Uncharacterized archae 84.2 61 0.0013 34.4 33.1 45 197-241 33-77 (294)
179 PF10481 CENP-F_N: Cenp-F N-te 83.9 59 0.0013 34.0 19.5 32 499-530 273-304 (307)
180 TIGR02338 gimC_beta prefoldin, 83.7 30 0.00066 31.0 12.7 43 501-543 64-106 (110)
181 KOG1029 Endocytic adaptor prot 82.6 1.2E+02 0.0025 36.3 35.1 34 512-545 564-598 (1118)
182 PLN03229 acetyl-coenzyme A car 82.5 1.2E+02 0.0025 36.3 22.0 99 267-381 431-543 (762)
183 PF13514 AAA_27: AAA domain 82.3 1.5E+02 0.0032 37.5 53.5 40 507-546 892-931 (1111)
184 PF09787 Golgin_A5: Golgin sub 82.0 1E+02 0.0022 35.4 37.7 40 425-464 387-426 (511)
185 KOG4360 Uncharacterized coiled 81.6 52 0.0011 37.2 15.5 84 198-281 261-345 (596)
186 PF15254 CCDC14: Coiled-coil d 81.4 67 0.0014 38.2 17.0 93 365-461 393-486 (861)
187 PF04065 Not3: Not1 N-terminal 81.4 69 0.0015 32.9 18.9 31 87-117 6-36 (233)
188 KOG0978 E3 ubiquitin ligase in 81.3 1.2E+02 0.0027 35.9 49.3 50 504-560 573-622 (698)
189 PF11559 ADIP: Afadin- and alp 80.9 51 0.0011 31.1 15.4 43 203-245 92-134 (151)
190 KOG1853 LIS1-interacting prote 80.7 73 0.0016 32.9 22.4 65 196-260 36-100 (333)
191 PF05911 DUF869: Plant protein 80.7 1.4E+02 0.003 36.1 27.0 31 337-367 734-764 (769)
192 PF10168 Nup88: Nuclear pore c 80.6 1.4E+02 0.003 35.9 20.6 25 135-159 563-587 (717)
193 KOG2129 Uncharacterized conser 80.0 1E+02 0.0022 34.1 23.8 93 263-360 206-302 (552)
194 PRK10884 SH3 domain-containing 79.1 20 0.00043 36.1 10.7 29 259-287 126-154 (206)
195 COG4372 Uncharacterized protei 79.0 1.1E+02 0.0023 33.7 29.1 62 308-379 235-297 (499)
196 COG4942 Membrane-bound metallo 78.9 1.1E+02 0.0025 34.0 29.6 89 416-543 171-263 (420)
197 PF15397 DUF4618: Domain of un 78.7 89 0.0019 32.6 26.9 41 408-448 185-225 (258)
198 PF04111 APG6: Autophagy prote 78.5 40 0.00086 36.2 13.5 38 246-283 45-82 (314)
199 cd00890 Prefoldin Prefoldin is 78.3 52 0.0011 29.8 13.1 44 501-544 84-127 (129)
200 KOG0249 LAR-interacting protei 78.3 1.5E+02 0.0033 35.1 19.3 75 203-286 110-184 (916)
201 PF06120 Phage_HK97_TLTM: Tail 77.5 1E+02 0.0023 32.9 15.9 37 204-240 133-169 (301)
202 KOG0249 LAR-interacting protei 77.4 1.6E+02 0.0035 34.9 24.5 33 297-329 91-123 (916)
203 PF10234 Cluap1: Clusterin-ass 77.1 46 0.001 34.8 12.9 27 246-272 192-218 (267)
204 PF10146 zf-C4H2: Zinc finger- 76.9 70 0.0015 32.8 14.1 69 306-380 34-102 (230)
205 PF15290 Syntaphilin: Golgi-lo 76.7 66 0.0014 33.7 13.6 26 213-238 118-143 (305)
206 TIGR02680 conserved hypothetic 76.5 2.4E+02 0.0053 36.5 45.8 39 250-288 289-327 (1353)
207 PF03915 AIP3: Actin interacti 76.4 1.4E+02 0.003 33.6 18.8 31 251-281 246-276 (424)
208 PRK15178 Vi polysaccharide exp 76.2 1.4E+02 0.003 33.6 17.2 96 249-360 240-338 (434)
209 PF06632 XRCC4: DNA double-str 76.1 44 0.00095 36.3 13.0 52 111-162 117-169 (342)
210 PF04111 APG6: Autophagy prote 75.4 54 0.0012 35.2 13.4 39 511-549 99-137 (314)
211 PF04156 IncA: IncA protein; 75.3 85 0.0018 30.7 15.9 11 412-422 140-150 (191)
212 COG1730 GIM5 Predicted prefold 74.7 80 0.0017 30.1 13.0 46 501-546 91-136 (145)
213 KOG0804 Cytoplasmic Zn-finger 74.7 1.5E+02 0.0032 33.2 16.8 17 309-325 433-449 (493)
214 PRK14011 prefoldin subunit alp 74.7 65 0.0014 30.6 12.2 42 505-546 82-123 (144)
215 cd00632 Prefoldin_beta Prefold 74.7 61 0.0013 28.7 12.2 45 501-545 60-104 (105)
216 PF01920 Prefoldin_2: Prefoldi 74.3 59 0.0013 28.3 11.8 41 501-541 59-99 (106)
217 TIGR01010 BexC_CtrB_KpsE polys 73.8 81 0.0018 34.2 14.7 70 310-379 213-291 (362)
218 PF10498 IFT57: Intra-flagella 73.8 65 0.0014 35.3 13.7 65 401-466 252-316 (359)
219 PF07106 TBPIP: Tat binding pr 72.3 58 0.0012 31.4 11.8 68 250-333 71-138 (169)
220 PF00170 bZIP_1: bZIP transcri 72.0 17 0.00038 29.1 6.8 43 511-553 19-61 (64)
221 PF11365 DUF3166: Protein of u 71.8 46 0.00099 29.4 9.6 73 252-324 9-89 (96)
222 COG3883 Uncharacterized protei 71.1 1.4E+02 0.003 31.3 23.0 23 355-381 120-142 (265)
223 PF07106 TBPIP: Tat binding pr 71.0 49 0.0011 31.9 10.9 30 306-335 74-103 (169)
224 PF10146 zf-C4H2: Zinc finger- 70.5 78 0.0017 32.5 12.6 36 505-540 68-103 (230)
225 PF12325 TMF_TATA_bd: TATA ele 70.4 89 0.0019 28.7 13.2 47 402-449 17-63 (120)
226 PF14197 Cep57_CLD_2: Centroso 70.1 30 0.00065 28.6 7.7 44 502-545 24-67 (69)
227 KOG2150 CCR4-NOT transcription 70.1 1.9E+02 0.0042 33.3 16.5 59 87-157 6-65 (575)
228 KOG1899 LAR transmembrane tyro 70.0 2.2E+02 0.0049 33.2 17.6 16 162-177 105-120 (861)
229 TIGR03017 EpsF chain length de 69.9 1.8E+02 0.004 32.2 25.8 32 249-280 340-371 (444)
230 TIGR00293 prefoldin, archaeal 69.6 82 0.0018 28.6 11.6 37 510-546 85-121 (126)
231 PF01486 K-box: K-box region; 69.2 39 0.00085 29.7 9.0 47 134-181 16-62 (100)
232 KOG4807 F-actin binding protei 69.1 1.8E+02 0.004 31.9 27.5 141 302-464 426-571 (593)
233 KOG4360 Uncharacterized coiled 69.1 2.1E+02 0.0046 32.6 20.4 98 253-361 200-300 (596)
234 COG3074 Uncharacterized protei 68.5 42 0.00091 27.7 7.9 25 257-281 38-62 (79)
235 KOG0972 Huntingtin interacting 67.8 1.7E+02 0.0036 31.1 14.1 65 192-263 253-320 (384)
236 PF09731 Mitofilin: Mitochondr 67.8 2.4E+02 0.0052 32.7 21.5 13 369-381 430-442 (582)
237 PF05483 SCP-1: Synaptonemal c 67.6 2.6E+02 0.0056 33.1 50.5 24 589-612 715-738 (786)
238 KOG3091 Nuclear pore complex, 67.0 2.3E+02 0.005 32.2 16.0 68 208-286 337-404 (508)
239 PF09304 Cortex-I_coil: Cortex 66.2 76 0.0016 28.5 9.9 75 198-283 2-76 (107)
240 PRK03947 prefoldin subunit alp 65.9 1.1E+02 0.0025 28.3 15.1 121 415-546 5-136 (140)
241 smart00338 BRLZ basic region l 65.3 22 0.00047 28.6 6.0 44 510-553 18-61 (65)
242 PF11365 DUF3166: Protein of u 65.2 96 0.0021 27.4 10.3 42 426-467 4-45 (96)
243 PF12004 DUF3498: Domain of un 65.1 2.1 4.5E-05 48.4 0.0 27 306-332 467-493 (495)
244 PF04728 LPP: Lipoprotein leuc 65.1 35 0.00077 27.1 6.8 47 213-270 4-50 (56)
245 PRK09841 cryptic autophosphory 64.4 97 0.0021 37.2 13.8 43 339-381 342-385 (726)
246 TIGR01005 eps_transp_fam exopo 64.0 3.2E+02 0.007 32.8 26.9 33 249-281 374-406 (754)
247 PF08581 Tup_N: Tup N-terminal 63.6 71 0.0015 27.2 8.9 32 138-169 40-72 (79)
248 PF06705 SF-assemblin: SF-asse 63.6 1.8E+02 0.004 29.8 29.1 35 313-347 152-186 (247)
249 PF07111 HCR: Alpha helical co 63.5 3.1E+02 0.0068 32.5 43.1 35 506-540 382-416 (739)
250 PF12761 End3: Actin cytoskele 63.2 91 0.002 31.1 10.9 58 338-415 134-191 (195)
251 cd00584 Prefoldin_alpha Prefol 63.1 1.2E+02 0.0026 27.6 12.6 43 501-543 84-126 (129)
252 PF10498 IFT57: Intra-flagella 62.7 2.2E+02 0.0049 31.2 15.0 67 191-264 245-314 (359)
253 KOG1003 Actin filament-coating 62.4 1.7E+02 0.0038 29.2 24.1 18 310-327 108-125 (205)
254 PRK00409 recombination and DNA 62.2 2.5E+02 0.0055 34.1 16.7 18 108-125 477-494 (782)
255 PF10267 Tmemb_cc2: Predicted 62.2 2.4E+02 0.0051 31.4 15.1 14 258-271 305-318 (395)
256 PLN03229 acetyl-coenzyme A car 61.9 3.5E+02 0.0075 32.5 23.9 41 118-158 456-500 (762)
257 COG4026 Uncharacterized protei 61.2 1.8E+02 0.004 29.6 12.6 51 407-457 154-204 (290)
258 PF02183 HALZ: Homeobox associ 60.8 38 0.00082 25.6 6.1 41 412-452 1-41 (45)
259 cd00890 Prefoldin Prefoldin is 60.4 1.3E+02 0.0028 27.1 11.5 45 403-447 81-125 (129)
260 PF12325 TMF_TATA_bd: TATA ele 60.4 1.4E+02 0.003 27.5 14.2 17 213-229 97-113 (120)
261 COG3883 Uncharacterized protei 60.3 2.2E+02 0.0049 29.8 19.9 71 211-288 44-114 (265)
262 KOG4005 Transcription factor X 59.9 22 0.00048 36.1 6.1 52 507-558 77-130 (292)
263 PF15294 Leu_zip: Leucine zipp 59.7 1.5E+02 0.0032 31.3 12.3 111 111-235 120-245 (278)
264 TIGR02231 conserved hypothetic 59.7 1.2E+02 0.0027 34.7 13.1 46 501-546 128-173 (525)
265 KOG1962 B-cell receptor-associ 59.6 1.4E+02 0.003 30.3 11.7 61 242-327 149-209 (216)
266 PF08172 CASP_C: CASP C termin 59.1 2.1E+02 0.0046 29.7 13.4 35 427-461 3-37 (248)
267 KOG4572 Predicted DNA-binding 59.1 4E+02 0.0086 32.3 25.4 169 249-446 837-1032(1424)
268 PF12795 MscS_porin: Mechanose 58.8 2.2E+02 0.0047 29.1 22.2 102 254-361 34-138 (240)
269 COG3206 GumC Uncharacterized p 58.6 3.1E+02 0.0067 30.8 22.3 26 257-282 245-270 (458)
270 TIGR01069 mutS2 MutS2 family p 57.0 2.9E+02 0.0062 33.6 16.0 18 108-125 472-489 (771)
271 KOG0804 Cytoplasmic Zn-finger 56.8 3.3E+02 0.0071 30.6 15.3 31 145-177 340-370 (493)
272 PF10234 Cluap1: Clusterin-ass 56.8 1.8E+02 0.0039 30.6 12.4 63 313-379 171-238 (267)
273 PRK09343 prefoldin subunit bet 56.2 1.6E+02 0.0035 26.9 13.0 44 501-544 68-111 (121)
274 PF09789 DUF2353: Uncharacteri 55.8 2.9E+02 0.0064 29.7 25.5 27 501-527 273-299 (319)
275 PF04582 Reo_sigmaC: Reovirus 55.4 23 0.00049 38.0 5.7 54 502-562 103-156 (326)
276 PF10805 DUF2730: Protein of u 54.8 44 0.00095 29.9 6.6 45 335-379 34-78 (106)
277 PF03915 AIP3: Actin interacti 54.5 3.6E+02 0.0077 30.3 16.4 55 410-464 207-266 (424)
278 TIGR03752 conj_TIGR03752 integ 53.9 1E+02 0.0022 34.8 10.6 53 135-187 57-109 (472)
279 PF07716 bZIP_2: Basic region 53.6 43 0.00094 26.0 5.7 37 510-546 17-53 (54)
280 PF14197 Cep57_CLD_2: Centroso 52.7 1.3E+02 0.0029 24.8 8.7 36 248-283 30-65 (69)
281 PF10018 Med4: Vitamin-D-recep 52.5 81 0.0018 31.1 8.8 58 406-464 6-63 (188)
282 PF03962 Mnd1: Mnd1 family; I 52.2 2.5E+02 0.0054 27.8 12.9 20 213-232 70-89 (188)
283 COG1340 Uncharacterized archae 51.9 3.2E+02 0.007 29.1 29.9 34 430-463 158-191 (294)
284 KOG0018 Structural maintenance 51.7 5.8E+02 0.013 31.9 36.5 28 12-39 32-59 (1141)
285 PF06785 UPF0242: Uncharacteri 51.4 3.5E+02 0.0075 29.3 17.2 18 627-644 357-374 (401)
286 PF00170 bZIP_1: bZIP transcri 51.0 61 0.0013 25.9 6.3 37 512-548 27-63 (64)
287 KOG4196 bZIP transcription fac 50.8 49 0.0011 30.7 6.2 46 510-562 73-118 (135)
288 PF09744 Jnk-SapK_ap_N: JNK_SA 50.6 2.4E+02 0.0052 27.2 15.4 32 200-231 84-115 (158)
289 PRK13729 conjugal transfer pil 50.5 53 0.0012 37.0 7.8 37 251-287 90-126 (475)
290 PRK11519 tyrosine kinase; Prov 50.4 2.5E+02 0.0055 33.6 14.1 39 343-381 346-385 (719)
291 PF03980 Nnf1: Nnf1 ; InterPr 50.0 75 0.0016 28.3 7.4 40 501-540 70-109 (109)
292 PF07889 DUF1664: Protein of u 49.3 1.6E+02 0.0034 27.4 9.4 67 313-381 45-111 (126)
293 KOG0288 WD40 repeat protein Ti 49.3 1.9E+02 0.0041 32.1 11.3 61 258-329 13-73 (459)
294 KOG4438 Centromere-associated 49.3 4.2E+02 0.0091 29.6 24.2 37 250-286 158-194 (446)
295 PF06156 DUF972: Protein of un 49.2 76 0.0017 28.6 7.2 52 509-560 6-57 (107)
296 PF06005 DUF904: Protein of un 49.0 95 0.0021 25.9 7.3 44 514-557 21-64 (72)
297 KOG0239 Kinesin (KAR3 subfamil 48.7 5.4E+02 0.012 30.7 16.3 97 243-350 181-280 (670)
298 TIGR00634 recN DNA repair prot 48.3 4.9E+02 0.011 30.2 27.5 70 365-449 300-372 (563)
299 PF13870 DUF4201: Domain of un 48.2 2.7E+02 0.0058 27.0 20.8 32 508-539 142-173 (177)
300 PF06008 Laminin_I: Laminin Do 48.2 3.3E+02 0.0072 28.1 25.8 99 414-553 125-223 (264)
301 PF11932 DUF3450: Protein of u 48.2 3.3E+02 0.007 28.0 18.3 38 347-385 128-166 (251)
302 PF08826 DMPK_coil: DMPK coile 47.3 1.1E+02 0.0024 24.7 7.1 43 413-455 15-57 (61)
303 TIGR03495 phage_LysB phage lys 46.8 1.8E+02 0.0038 27.4 9.5 71 209-279 23-96 (135)
304 KOG3684 Ca2+-activated K+ chan 46.7 4.2E+02 0.009 30.0 13.6 32 199-230 435-466 (489)
305 COG4026 Uncharacterized protei 46.6 3.4E+02 0.0073 27.7 12.3 37 427-463 132-168 (290)
306 COG1842 PspA Phage shock prote 46.3 3.4E+02 0.0074 27.7 20.5 23 135-157 29-51 (225)
307 PRK05561 DNA topoisomerase IV 46.3 1.3E+02 0.0027 36.4 10.6 102 52-160 357-460 (742)
308 PF03962 Mnd1: Mnd1 family; I 46.2 3.1E+02 0.0067 27.2 13.2 35 253-287 64-98 (188)
309 PF12761 End3: Actin cytoskele 46.0 3.2E+02 0.007 27.3 11.8 49 417-465 97-153 (195)
310 PF09738 DUF2051: Double stran 45.7 4.1E+02 0.0089 28.5 17.2 26 428-453 145-170 (302)
311 PF12808 Mto2_bdg: Micro-tubul 45.7 41 0.00088 26.3 4.2 30 257-286 21-50 (52)
312 COG3074 Uncharacterized protei 45.6 85 0.0018 26.0 6.2 41 407-447 30-70 (79)
313 KOG3647 Predicted coiled-coil 45.5 3.8E+02 0.0083 28.1 14.0 100 408-546 104-203 (338)
314 KOG2129 Uncharacterized conser 45.4 4.8E+02 0.01 29.1 26.5 52 408-459 252-308 (552)
315 PF05546 She9_MDM33: She9 / Md 45.2 3.4E+02 0.0074 27.4 16.6 115 139-285 11-133 (207)
316 PF09731 Mitofilin: Mitochondr 45.1 5.5E+02 0.012 29.8 24.8 22 78-99 247-268 (582)
317 PF13094 CENP-Q: CENP-Q, a CEN 45.1 2.8E+02 0.0061 26.4 14.9 60 402-462 21-80 (160)
318 PLN02939 transferase, transfer 44.8 7.2E+02 0.016 31.0 30.8 44 507-550 358-401 (977)
319 PF11544 Spc42p: Spindle pole 44.7 1.5E+02 0.0032 25.1 7.6 52 407-465 3-54 (76)
320 TIGR01010 BexC_CtrB_KpsE polys 44.6 4.4E+02 0.0095 28.5 19.7 67 211-286 169-235 (362)
321 PF15035 Rootletin: Ciliary ro 44.6 3.2E+02 0.007 26.9 19.0 23 138-160 17-39 (182)
322 COG5185 HEC1 Protein involved 44.3 5.2E+02 0.011 29.3 33.2 15 366-380 417-431 (622)
323 KOG2077 JNK/SAPK-associated pr 44.1 2E+02 0.0043 33.2 10.8 93 369-465 273-371 (832)
324 PF15290 Syntaphilin: Golgi-lo 43.6 4.2E+02 0.0091 28.0 13.3 17 212-228 124-140 (305)
325 cd07608 BAR_ArfGAP_fungi The B 43.6 83 0.0018 31.3 7.1 61 59-130 4-64 (192)
326 PF05010 TACC: Transforming ac 43.4 3.6E+02 0.0079 27.2 26.4 48 409-456 154-201 (207)
327 PF04977 DivIC: Septum formati 42.6 1.2E+02 0.0025 24.9 7.1 48 514-561 20-67 (80)
328 PF04102 SlyX: SlyX; InterPro 42.6 1.4E+02 0.0031 24.5 7.3 43 424-466 5-47 (69)
329 COG2900 SlyX Uncharacterized p 42.5 1.1E+02 0.0023 25.6 6.4 43 516-558 6-48 (72)
330 TIGR02449 conserved hypothetic 42.4 1.6E+02 0.0034 24.2 7.4 47 401-448 7-53 (65)
331 TIGR02894 DNA_bind_RsfA transc 42.2 1.3E+02 0.0029 29.0 8.0 47 404-450 99-145 (161)
332 PRK11519 tyrosine kinase; Prov 42.0 6.8E+02 0.015 30.0 17.3 38 206-243 261-298 (719)
333 PF08581 Tup_N: Tup N-terminal 42.0 2.2E+02 0.0047 24.2 10.1 42 306-347 34-75 (79)
334 PF10212 TTKRSYEDQ: Predicted 41.8 6E+02 0.013 29.3 21.1 40 506-545 475-514 (518)
335 COG1382 GimC Prefoldin, chaper 41.7 2.8E+02 0.0062 25.5 12.1 34 513-546 72-105 (119)
336 PF13870 DUF4201: Domain of un 41.6 3.4E+02 0.0073 26.3 22.2 38 251-288 98-135 (177)
337 PRK10361 DNA recombination pro 41.3 5.9E+02 0.013 29.1 24.8 55 306-360 142-196 (475)
338 PF13874 Nup54: Nucleoporin co 41.2 1.5E+02 0.0033 27.7 8.4 109 110-223 13-125 (141)
339 PF05335 DUF745: Protein of un 41.2 3.7E+02 0.0081 26.7 13.6 29 260-288 69-97 (188)
340 PF08287 DASH_Spc19: Spc19; I 41.2 3.3E+02 0.0072 26.1 11.3 95 142-240 9-103 (153)
341 PRK09841 cryptic autophosphory 41.1 7.1E+02 0.015 29.9 20.5 40 203-242 258-297 (726)
342 PLN03188 kinesin-12 family pro 40.9 9E+02 0.019 31.0 25.2 279 43-347 965-1254(1320)
343 TIGR02231 conserved hypothetic 40.8 2.3E+02 0.0049 32.6 11.4 21 138-158 72-92 (525)
344 KOG2077 JNK/SAPK-associated pr 40.0 1.8E+02 0.0039 33.5 9.7 42 407-448 327-368 (832)
345 cd00584 Prefoldin_alpha Prefol 39.9 2.9E+02 0.0063 25.1 12.2 46 403-448 81-126 (129)
346 PF05377 FlaC_arch: Flagella a 39.9 81 0.0018 25.0 5.1 31 519-549 1-31 (55)
347 PF04012 PspA_IM30: PspA/IM30 39.8 4E+02 0.0086 26.6 21.9 33 110-148 16-48 (221)
348 PF10186 Atg14: UV radiation r 39.1 4.5E+02 0.0098 27.1 18.9 28 254-281 59-86 (302)
349 PF05278 PEARLI-4: Arabidopsis 39.0 4.9E+02 0.011 27.4 14.0 97 246-358 147-243 (269)
350 PF10267 Tmemb_cc2: Predicted 38.9 1.8E+02 0.0038 32.4 9.5 23 528-557 272-294 (395)
351 KOG0241 Kinesin-like protein [ 38.8 1.3E+02 0.0028 36.8 8.7 63 139-215 366-428 (1714)
352 KOG4005 Transcription factor X 38.4 80 0.0017 32.3 6.1 44 407-450 102-145 (292)
353 PRK11546 zraP zinc resistance 38.1 2.1E+02 0.0046 27.2 8.6 69 73-154 45-113 (143)
354 PF11932 DUF3450: Protein of u 37.8 4.7E+02 0.01 26.8 14.0 9 548-556 144-152 (251)
355 PF04582 Reo_sigmaC: Reovirus 37.8 72 0.0016 34.3 6.1 45 502-546 110-154 (326)
356 PRK02119 hypothetical protein; 37.5 1.6E+02 0.0035 24.5 7.0 45 420-464 6-50 (73)
357 TIGR03752 conj_TIGR03752 integ 37.3 4.2E+02 0.009 30.1 12.1 36 407-442 64-99 (472)
358 KOG2629 Peroxisomal membrane a 37.2 2.7E+02 0.0058 29.5 9.9 71 312-384 123-193 (300)
359 TIGR01000 bacteriocin_acc bact 37.1 6.4E+02 0.014 28.3 25.7 13 591-603 443-455 (457)
360 PF04102 SlyX: SlyX; InterPro 37.0 1.9E+02 0.0041 23.7 7.3 50 510-559 3-52 (69)
361 KOG1103 Predicted coiled-coil 36.9 5.8E+02 0.013 27.7 25.3 111 209-329 150-263 (561)
362 PF10186 Atg14: UV radiation r 36.7 4.9E+02 0.011 26.8 18.4 14 259-272 127-140 (302)
363 PRK15178 Vi polysaccharide exp 36.3 6.8E+02 0.015 28.3 20.8 68 211-287 241-308 (434)
364 PF10482 CtIP_N: Tumour-suppre 36.1 3.4E+02 0.0074 24.8 11.9 40 516-555 80-119 (120)
365 PRK00888 ftsB cell division pr 35.3 70 0.0015 28.6 4.8 35 513-547 29-63 (105)
366 KOG4603 TBP-1 interacting prot 35.0 4.5E+02 0.0097 25.8 12.1 69 71-157 75-143 (201)
367 KOG3809 Microtubule-binding pr 34.8 2.9E+02 0.0063 30.9 10.0 65 223-287 504-568 (583)
368 PF06818 Fez1: Fez1; InterPro 34.7 4.9E+02 0.011 26.2 21.0 109 263-378 85-196 (202)
369 PF04912 Dynamitin: Dynamitin 34.7 6.6E+02 0.014 27.6 22.9 30 259-288 88-117 (388)
370 PF10191 COG7: Golgi complex c 34.5 9.2E+02 0.02 29.3 16.5 30 255-284 67-96 (766)
371 PF02994 Transposase_22: L1 tr 34.4 90 0.002 34.3 6.5 48 509-563 142-189 (370)
372 PF09738 DUF2051: Double stran 34.2 4.7E+02 0.01 28.0 11.5 19 528-546 143-161 (302)
373 PF04380 BMFP: Membrane fusoge 33.7 63 0.0014 27.3 4.0 32 248-279 47-78 (79)
374 PF02403 Seryl_tRNA_N: Seryl-t 33.7 3.3E+02 0.0072 23.9 11.5 26 134-159 40-65 (108)
375 TIGR02449 conserved hypothetic 33.6 2.7E+02 0.0059 22.9 9.3 12 269-280 18-29 (65)
376 PRK13169 DNA replication intia 33.5 2E+02 0.0043 26.1 7.4 51 509-559 6-56 (110)
377 KOG1962 B-cell receptor-associ 33.4 1.2E+02 0.0027 30.7 6.6 60 407-466 149-208 (216)
378 PRK03947 prefoldin subunit alp 33.3 3.9E+02 0.0085 24.7 13.1 43 195-237 91-133 (140)
379 PF14282 FlxA: FlxA-like prote 33.3 3.5E+02 0.0076 24.1 9.0 20 339-358 54-73 (106)
380 cd00632 Prefoldin_beta Prefold 33.2 3.4E+02 0.0074 23.9 12.5 23 140-162 9-31 (105)
381 PF07798 DUF1640: Protein of u 32.9 4.7E+02 0.01 25.4 17.4 125 233-379 9-151 (177)
382 PRK14127 cell division protein 32.8 2E+02 0.0042 26.1 7.2 46 501-546 27-72 (109)
383 smart00502 BBC B-Box C-termina 32.7 3.4E+02 0.0074 23.8 14.8 33 203-235 70-102 (127)
384 PRK15422 septal ring assembly 32.4 3.2E+02 0.0069 23.3 10.4 34 427-460 8-41 (79)
385 PRK10698 phage shock protein P 32.2 5.5E+02 0.012 26.0 21.6 11 370-380 205-215 (222)
386 KOG4438 Centromere-associated 32.2 7.6E+02 0.017 27.7 23.6 54 407-460 246-299 (446)
387 KOG0982 Centrosomal protein Nu 32.1 7.7E+02 0.017 27.7 25.1 19 310-328 409-427 (502)
388 PF12240 Angiomotin_C: Angiomo 32.0 5.4E+02 0.012 25.9 20.5 56 269-327 32-87 (205)
389 PF06548 Kinesin-related: Kine 31.9 8E+02 0.017 27.8 25.8 120 214-344 346-481 (488)
390 PF06810 Phage_GP20: Phage min 31.8 2.8E+02 0.0061 26.5 8.6 43 135-177 25-67 (155)
391 PRK15396 murein lipoprotein; P 31.7 1.7E+02 0.0037 24.9 6.2 18 253-270 55-72 (78)
392 PF06810 Phage_GP20: Phage min 31.3 2.5E+02 0.0055 26.9 8.2 69 256-339 11-79 (155)
393 KOG1103 Predicted coiled-coil 31.3 7.2E+02 0.016 27.1 24.2 61 404-464 227-293 (561)
394 PF15358 TSKS: Testis-specific 31.2 3.5E+02 0.0075 30.0 9.9 48 414-461 123-170 (558)
395 TIGR03545 conserved hypothetic 31.1 4.9E+02 0.011 30.3 11.9 19 503-521 516-534 (555)
396 PF14389 Lzipper-MIP1: Leucine 31.0 3.5E+02 0.0076 23.4 8.6 18 265-282 8-25 (88)
397 PRK10963 hypothetical protein; 31.0 96 0.0021 31.5 5.6 42 505-557 38-79 (223)
398 PF09744 Jnk-SapK_ap_N: JNK_SA 30.8 5E+02 0.011 25.1 13.1 32 195-226 86-117 (158)
399 PF06210 DUF1003: Protein of u 30.7 4E+02 0.0088 24.0 9.7 15 107-121 21-35 (108)
400 PF02403 Seryl_tRNA_N: Seryl-t 30.7 1.7E+02 0.0037 25.8 6.5 59 407-465 34-95 (108)
401 PF05377 FlaC_arch: Flagella a 30.6 2.4E+02 0.0051 22.4 6.3 25 415-439 6-30 (55)
402 PRK04406 hypothetical protein; 30.6 2.9E+02 0.0064 23.2 7.5 44 421-464 9-52 (75)
403 TIGR03545 conserved hypothetic 30.6 7E+02 0.015 29.1 13.0 25 356-380 181-205 (555)
404 PF10805 DUF2730: Protein of u 30.4 2.4E+02 0.0053 25.1 7.5 61 405-465 24-86 (106)
405 smart00806 AIP3 Actin interact 30.2 8.3E+02 0.018 27.4 22.9 86 367-465 181-271 (426)
406 PF06008 Laminin_I: Laminin Do 30.0 6.3E+02 0.014 26.0 27.4 9 116-124 17-25 (264)
407 PF11180 DUF2968: Protein of u 29.8 5.8E+02 0.012 25.5 13.0 88 420-546 95-182 (192)
408 PF08826 DMPK_coil: DMPK coile 29.6 3E+02 0.0066 22.2 9.2 23 207-229 27-49 (61)
409 PRK09973 putative outer membra 29.4 1.8E+02 0.004 25.1 6.0 44 213-267 25-68 (85)
410 PRK06569 F0F1 ATP synthase sub 29.4 5.2E+02 0.011 24.9 12.5 61 401-461 33-94 (155)
411 PRK00846 hypothetical protein; 29.3 2.3E+02 0.005 24.0 6.6 45 514-558 9-53 (77)
412 PF14931 IFT20: Intraflagellar 29.2 4.6E+02 0.0099 24.1 12.1 33 60-97 24-56 (120)
413 smart00338 BRLZ basic region l 29.2 2E+02 0.0043 23.0 6.1 35 513-547 28-62 (65)
414 KOG4403 Cell surface glycoprot 29.0 5.9E+02 0.013 28.5 11.2 22 74-95 114-136 (575)
415 TIGR02132 phaR_Bmeg polyhydrox 28.9 5.7E+02 0.012 25.2 16.3 130 45-201 39-171 (189)
416 PF15397 DUF4618: Domain of un 28.8 6.9E+02 0.015 26.1 28.9 60 203-262 72-131 (258)
417 TIGR01069 mutS2 MutS2 family p 28.8 1.1E+03 0.023 28.8 14.7 18 70-87 414-431 (771)
418 PF07889 DUF1664: Protein of u 28.6 4.8E+02 0.01 24.2 11.7 59 208-277 64-122 (126)
419 PF10205 KLRAQ: Predicted coil 28.4 3.5E+02 0.0075 24.3 7.8 45 422-466 25-69 (102)
420 PF15066 CAGE1: Cancer-associa 28.4 9.2E+02 0.02 27.4 26.0 42 421-462 483-525 (527)
421 PF06005 DUF904: Protein of un 28.2 3.5E+02 0.0077 22.5 9.0 36 410-445 19-54 (72)
422 PRK04325 hypothetical protein; 28.2 2.5E+02 0.0053 23.5 6.6 45 514-558 5-49 (74)
423 PF03980 Nnf1: Nnf1 ; InterPr 28.1 4.2E+02 0.0091 23.4 12.0 78 207-284 29-106 (109)
424 PF15450 DUF4631: Domain of un 27.9 9.8E+02 0.021 27.6 41.3 30 348-379 410-439 (531)
425 PF10205 KLRAQ: Predicted coil 27.9 2E+02 0.0043 25.8 6.2 47 517-563 25-71 (102)
426 KOG3564 GTPase-activating prot 27.8 5.8E+02 0.013 29.1 11.0 97 431-566 36-132 (604)
427 PF14389 Lzipper-MIP1: Leucine 27.8 4E+02 0.0086 23.0 9.4 34 428-461 6-39 (88)
428 PF08657 DASH_Spc34: DASH comp 27.7 2.7E+02 0.0057 29.2 8.2 25 506-530 234-258 (259)
429 PRK00888 ftsB cell division pr 27.4 2.2E+02 0.0047 25.5 6.6 41 506-546 29-69 (105)
430 TIGR00634 recN DNA repair prot 27.2 1E+03 0.022 27.6 23.0 55 409-463 315-372 (563)
431 PF02346 Vac_Fusion: Chordopox 27.1 2.1E+02 0.0045 22.9 5.6 41 425-465 3-43 (57)
432 PF12329 TMF_DNA_bd: TATA elem 27.0 3.7E+02 0.0081 22.4 8.3 30 413-442 30-59 (74)
433 PF02996 Prefoldin: Prefoldin 26.9 3.2E+02 0.0069 24.3 7.8 44 501-544 74-117 (120)
434 PF02183 HALZ: Homeobox associ 26.7 1.7E+02 0.0037 22.1 4.8 36 523-558 3-38 (45)
435 PF01166 TSC22: TSC-22/dip/bun 26.7 1.2E+02 0.0027 24.2 4.2 36 246-288 9-44 (59)
436 KOG4603 TBP-1 interacting prot 26.6 5.3E+02 0.011 25.3 9.2 8 250-257 70-77 (201)
437 PF05266 DUF724: Protein of un 26.6 6.5E+02 0.014 25.0 17.5 69 105-173 17-98 (190)
438 PF13600 DUF4140: N-terminal d 26.5 1.3E+02 0.0028 26.4 5.0 28 519-546 71-98 (104)
439 PRK00295 hypothetical protein; 26.4 3.1E+02 0.0068 22.5 6.8 43 421-463 3-45 (68)
440 TIGR00219 mreC rod shape-deter 26.3 1.9E+02 0.004 30.6 6.9 22 134-155 70-91 (283)
441 PF14992 TMCO5: TMCO5 family 26.1 8E+02 0.017 26.0 17.1 23 265-287 70-92 (280)
442 TIGR02338 gimC_beta prefoldin, 26.1 4.7E+02 0.01 23.3 11.2 32 195-226 71-102 (110)
443 PRK00409 recombination and DNA 26.1 1.2E+03 0.026 28.4 14.5 18 70-87 419-436 (782)
444 PF14257 DUF4349: Domain of un 26.0 1.8E+02 0.004 30.0 6.8 56 256-327 130-185 (262)
445 PHA01750 hypothetical protein 26.0 2.2E+02 0.0047 23.4 5.5 38 503-540 34-71 (75)
446 PRK14127 cell division protein 25.8 1.5E+02 0.0033 26.8 5.2 36 253-288 32-67 (109)
447 PF10211 Ax_dynein_light: Axon 25.7 6.6E+02 0.014 24.8 13.3 18 30-47 32-49 (189)
448 PRK11578 macrolide transporter 25.6 4.6E+02 0.01 28.4 10.2 80 208-287 95-180 (370)
449 KOG4571 Activating transcripti 25.6 1.7E+02 0.0037 30.9 6.3 46 508-560 238-283 (294)
450 cd07599 BAR_Rvs167p The Bin/Am 25.2 6.9E+02 0.015 24.9 17.3 31 85-115 26-56 (216)
451 PLN03230 acetyl-coenzyme A car 25.2 1.2E+02 0.0026 33.9 5.3 36 104-151 59-94 (431)
452 KOG4657 Uncharacterized conser 24.9 7.6E+02 0.017 25.3 15.0 120 404-562 32-158 (246)
453 PF15188 CCDC-167: Coiled-coil 24.8 3.1E+02 0.0066 23.8 6.6 47 335-381 4-51 (85)
454 PF04340 DUF484: Protein of un 24.8 1.9E+02 0.0042 29.1 6.6 43 504-557 40-82 (225)
455 COG2960 Uncharacterized protei 24.8 1.6E+02 0.0034 26.2 4.9 36 248-283 56-91 (103)
456 PRK00736 hypothetical protein; 24.8 3.1E+02 0.0067 22.5 6.5 44 420-463 2-45 (68)
457 PF04508 Pox_A_type_inc: Viral 24.7 98 0.0021 20.1 2.7 18 513-530 3-20 (23)
458 PF04859 DUF641: Plant protein 24.6 3.1E+02 0.0067 25.7 7.2 50 506-555 82-131 (131)
459 TIGR02977 phageshock_pspA phag 24.5 7.3E+02 0.016 24.9 24.2 35 208-242 102-136 (219)
460 KOG4302 Microtubule-associated 24.4 1.3E+03 0.027 27.6 16.1 195 304-544 61-259 (660)
461 PRK02793 phi X174 lysis protei 24.3 3.8E+02 0.0083 22.2 7.0 45 419-463 4-48 (72)
462 PF05103 DivIVA: DivIVA protei 23.9 62 0.0013 29.4 2.5 29 135-163 30-58 (131)
463 PRK02119 hypothetical protein; 23.8 4.3E+02 0.0093 22.0 7.8 50 509-558 7-56 (73)
464 PF03961 DUF342: Protein of un 23.7 5.3E+02 0.012 29.0 10.4 36 509-544 373-408 (451)
465 KOG3433 Protein involved in me 23.6 7.3E+02 0.016 24.6 10.9 39 519-557 117-155 (203)
466 PRK13922 rod shape-determining 23.4 2.3E+02 0.0049 29.5 6.9 35 140-174 72-106 (276)
467 PF14282 FlxA: FlxA-like prote 23.4 4.6E+02 0.01 23.3 8.0 22 311-332 19-40 (106)
468 PF05615 THOC7: Tho complex su 23.3 5.9E+02 0.013 23.5 12.4 97 103-244 23-119 (139)
469 PF10359 Fmp27_WPPW: RNA pol I 23.3 1.7E+02 0.0037 33.3 6.3 56 508-563 160-224 (475)
470 KOG0979 Structural maintenance 23.3 1.5E+03 0.033 28.3 30.6 25 262-286 777-801 (1072)
471 PF12240 Angiomotin_C: Angiomo 23.3 7.8E+02 0.017 24.8 18.9 30 517-546 135-164 (205)
472 PF03993 DUF349: Domain of Unk 23.2 3.1E+02 0.0067 22.2 6.4 52 35-89 13-64 (77)
473 PF08657 DASH_Spc34: DASH comp 23.2 3.5E+02 0.0076 28.3 8.1 82 195-277 177-258 (259)
474 PRK15030 multidrug efflux syst 23.2 3.6E+02 0.0077 29.7 8.8 36 250-285 140-175 (397)
475 PRK00286 xseA exodeoxyribonucl 23.2 1.1E+03 0.023 26.3 15.9 60 67-126 245-311 (438)
476 KOG4196 bZIP transcription fac 23.1 6.3E+02 0.014 23.7 10.3 36 209-244 78-113 (135)
477 KOG0288 WD40 repeat protein Ti 23.0 1.1E+03 0.024 26.4 12.9 49 107-155 24-73 (459)
478 smart00340 HALZ homeobox assoc 22.8 75 0.0016 23.7 2.2 20 404-424 15-34 (44)
479 KOG4809 Rab6 GTPase-interactin 22.6 1.2E+03 0.027 27.0 34.0 63 345-420 423-485 (654)
480 COG4467 Regulator of replicati 22.6 3.9E+02 0.0084 24.2 6.9 49 509-557 6-54 (114)
481 PF06428 Sec2p: GDP/GTP exchan 22.6 94 0.002 27.7 3.2 46 501-546 34-79 (100)
482 PF11544 Spc42p: Spindle pole 22.5 4.8E+02 0.01 22.1 7.9 44 407-450 10-53 (76)
483 PRK01203 prefoldin subunit alp 22.4 6.5E+02 0.014 23.6 11.8 33 512-544 88-120 (130)
484 PF06818 Fez1: Fez1; InterPro 22.4 8.1E+02 0.018 24.7 21.1 37 138-177 11-47 (202)
485 PF10211 Ax_dynein_light: Axon 22.3 4.3E+02 0.0093 26.1 8.3 55 408-462 133-188 (189)
486 PF12808 Mto2_bdg: Micro-tubul 22.2 3.2E+02 0.0069 21.5 5.6 22 310-331 28-49 (52)
487 cd07588 BAR_Amphiphysin The Bi 22.2 8.2E+02 0.018 24.7 13.4 28 84-111 35-62 (211)
488 PF07851 TMPIT: TMPIT-like pro 22.0 1E+03 0.022 25.8 12.8 113 434-597 1-126 (330)
489 PF11598 COMP: Cartilage oligo 21.9 3.6E+02 0.0079 20.5 6.0 36 507-542 4-39 (45)
490 PF14077 WD40_alt: Alternative 21.7 74 0.0016 24.2 2.0 18 514-531 14-31 (48)
491 PF04420 CHD5: CHD5-like prote 21.7 1.9E+02 0.0041 27.8 5.5 41 137-177 40-82 (161)
492 cd00187 TOP4c DNA Topoisomeras 21.6 7.7E+02 0.017 27.9 11.0 99 52-157 322-425 (445)
493 COG4839 FtsL Protein required 21.6 1.5E+02 0.0033 27.2 4.4 47 507-558 54-102 (120)
494 PF08606 Prp19: Prp19/Pso4-lik 21.5 1.6E+02 0.0035 24.5 4.1 32 33-64 10-41 (70)
495 PF15188 CCDC-167: Coiled-coil 21.4 5.4E+02 0.012 22.3 7.5 61 211-272 4-64 (85)
496 PF04728 LPP: Lipoprotein leuc 21.4 4.3E+02 0.0092 21.1 7.6 28 519-546 4-31 (56)
497 TIGR02209 ftsL_broad cell divi 21.3 1.8E+02 0.0038 24.4 4.7 36 252-287 25-60 (85)
498 PF05529 Bap31: B-cell recepto 20.9 3.9E+02 0.0085 26.2 7.7 67 366-446 125-191 (192)
499 KOG2264 Exostosin EXT1L [Signa 20.9 2.7E+02 0.0059 32.2 7.0 50 407-456 98-147 (907)
500 KOG2751 Beclin-like protein [S 20.8 1.2E+03 0.026 26.2 12.6 121 366-549 150-270 (447)
No 1
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=100.00 E-value=3.7e-109 Score=894.16 Aligned_cols=598 Identities=42% Similarity=0.607 Sum_probs=549.3
Q ss_pred CCChHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhh
Q 006469 17 SSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTK 96 (644)
Q Consensus 17 ~~~~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTk 96 (644)
+++++.+++++|+.|||..||+.||++|++|+++|++|+++||.|++.||+|||++|++|+++++||||+||.|||+||+
T Consensus 1 ~sa~~~~~~~~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~Ltk 80 (629)
T KOG0963|consen 1 SAANVGSVTQYWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTK 80 (629)
T ss_pred CcchHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH
Q 006469 97 RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176 (644)
Q Consensus 97 RsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~ 176 (644)
|||+||.+||+||+.|+|||||+|+|..+..+..+++..+.|+.+|+.++.+++.+++++++|.++++.|+++++++++.
T Consensus 81 Rsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~ 160 (629)
T KOG0963|consen 81 RSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQL 160 (629)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHH
Q 006469 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL 256 (644)
Q Consensus 177 ~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml 256 (644)
++..+...+..++..+...|.+++.-+.+.+..+++++..++.++..|++.++.+|.++++++.+|+++.+++.+|+.+|
T Consensus 161 ~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~li 240 (629)
T KOG0963|consen 161 LEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLI 240 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN 336 (644)
Q Consensus 257 ~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~ 336 (644)
|.|||+|++|+..||+|++.|+.+++.++++......++.+ .+...|..+|.+|.+|..+++++++++..+++.+..
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~---~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~ 317 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDID---ALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKA 317 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987655433333 445558889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccc-hhhhhcchhhhchhHHHHHHHhhhhh
Q 006469 337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAE-DWEVATNDEEMSKMESLLLDKNRKME 415 (644)
Q Consensus 337 ~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~-~~~~a~~~~~~~~LE~lLl~kNrkL~ 415 (644)
+|+.|+.++..+...+.+++.+|+++ +||++||+||.|||+||||...++ +++ ....++|++|++|||+|+
T Consensus 318 qI~~le~~l~~~~~~leel~~kL~~~---sDYeeIK~ELsiLk~ief~~se~a~~~~-----~~~~~leslLl~knr~lq 389 (629)
T KOG0963|consen 318 QISALEKELKAKISELEELKEKLNSR---SDYEEIKKELSILKAIEFGDSEEANDED-----ETAKTLESLLLEKNRKLQ 389 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHhhcCCcccccccc-----cccchHHHHHHHHHhhhh
Confidence 99999999999999999999999996 899999999999999999955433 221 345799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCC
Q 006469 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKH 495 (644)
Q Consensus 416 ~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (644)
++++.||+.+..+..++..+....+.+.++..+++.+|++||+||..++......| ...++.++++..+.+.+..+
T Consensus 390 ~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~----~~~~~~~~~~~~v~e~s~~~ 465 (629)
T KOG0963|consen 390 NENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEG----ATARREEGSGQPVPESSIMG 465 (629)
T ss_pred HHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCc----chhhhcccCCcCCCcccccC
Confidence 99999999999999999999999999999999999999999999999997544322 22333444444444333221
Q ss_pred C----CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccccccccCC
Q 006469 496 T----YPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGS 571 (644)
Q Consensus 496 ~----~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~~~~~~~~ 571 (644)
+ +..+..+.|+|||++||||||.||.+++.+++.....+..+..++.++++||++|||||||+|+|.+++
T Consensus 466 ~~p~~~~~~~~s~~l~ii~~qRdrfr~~n~~~e~~~r~a~~~~~~l~~el~~~~a~n~~lyekir~~q~y~~~~------ 539 (629)
T KOG0963|consen 466 GGPSLPNGGVLSRILSVISSQRDRFRARNVELEAQVRLANDKIGFLESELEKLKADNTKLYEKIRYLQSYDGKS------ 539 (629)
T ss_pred CCCCccccccccccchhhhcccchhhhhhhhHHHHHhhccCchhHHhhhhhhhhcccccccccccCccccccCC------
Confidence 1 223466779999999999999999999999999999999999999999999999999999999995532
Q ss_pred CCccccccCCCCchhhHHHHHHHHhhcChhHhhhHHHHHHhhhcCCchhhHHHhhhhhhhcchhhhHhHhhcC
Q 006469 572 KKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644 (644)
Q Consensus 572 ~~~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vL~nr~~R~~f~~Y~ 644 (644)
+...|++.+|..+||++||||++|+++|+.|+|+.|++++|++++++|++|+||++|++|||||
T Consensus 540 ---------~~~~d~e~~y~~~yee~l~p~a~f~k~e~~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~~y~ 603 (629)
T KOG0963|consen 540 ---------GESSDVESQYSAAYEESISPFASFRKKERERKYKRLGSFERITLSLGRTLLFNKMTRTLFFFYT 603 (629)
T ss_pred ---------CCCcchhhhhhhHHHhhcCHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999998
No 2
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=100.00 E-value=3.3e-52 Score=422.11 Aligned_cols=212 Identities=39% Similarity=0.601 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC-------CCCCCCcchh
Q 006469 432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK-------HTYPDQDQSS 504 (644)
Q Consensus 432 l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s 504 (644)
|+.+++++..++++++++++||++||+||.+++..... ...+++.+.+.+|++..++....+ ++.+.+++++
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~s 79 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSA-SRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSS 79 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCCcccccccchhhccCccccCCCCCCccCCCCCCccc
Confidence 46789999999999999999999999999999976332 234566666666655433322111 1112368999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcccccccccc----CCCCccc--cc
Q 006469 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISR----GSKKYAE--DL 578 (644)
Q Consensus 505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~~~~~~----~~~~~~~--~~ 578 (644)
||||||+||||||+||.|||+|++++++++..|++|+++|++||+||||||||||||++++.... +..+++. ..
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~ 159 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSP 159 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999996421111 2222222 22
Q ss_pred cCCCCchhhH-HHHHHHHhhcChhHhhhHHHHHHhhhcCCchhhHHHhhhhhhhcchhhhHhHhhcC
Q 006469 579 ESGFTSDIES-KYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644 (644)
Q Consensus 579 ~~~~~~d~e~-~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vL~nr~~R~~f~~Y~ 644 (644)
.++...|++. +|+.+||+.||||++|+++|++|+|++|+|+||+||++||+||+||++||+|||||
T Consensus 160 ~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~~R~~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~ 226 (248)
T PF08172_consen 160 EPGGSSDVESNRYSSAYEESLNPFAAFRKRERQRRYKRLSPPERIFLSLTRFVLSNRTTRMLFFFYC 226 (248)
T ss_pred CCCCCCchhHHHHHHHHHhccChHHHHhHhhHHHHHhcCChHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 2233456776 99999999999999999999999999999999999999999999999999999998
No 3
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.31 E-value=7.7e-09 Score=117.15 Aligned_cols=300 Identities=17% Similarity=0.227 Sum_probs=191.1
Q ss_pred hhhhhhhHHHHHHHhhhhhcCCCC---------hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHH
Q 006469 95 TKRAKFGENAFLNIYQKLYEAPDP---------YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRR 165 (644)
Q Consensus 95 TkRsK~aE~aFl~~Y~~L~eaPDP---------~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~ 165 (644)
.|+ -+++++|++...+- ++|-| .|++..+.+...-. ....+-..|+.++.+|..++..++-+..+
T Consensus 176 ~kp-~p~~t~~l~~lpPq-~tpaqtPl~sP~~~~P~~Tta~a~v~l~-saskte~eLr~QvrdLtEkLetlR~kR~E--- 249 (1243)
T KOG0971|consen 176 QKP-VPAATGELSSLPPQ-ETPAQTPLASPIIPTPVLTTAGAVVPLP-SASKTEEELRAQVRDLTEKLETLRLKRAE--- 249 (1243)
T ss_pred CCC-ChhhhcccccCCCc-cCCCCCCccCCCCCCCCCCCccccCCCC-ccccchHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 355 66778998877663 23433 33333322211100 11223334999999999999998866664
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 006469 166 LEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE 245 (644)
Q Consensus 166 Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~ 245 (644)
.+.++++|++-. -.+ +.-.||+ ..+.+.+.+|+++|..+....++++. |+.+|-.+
T Consensus 250 Dk~Kl~Elekmk-----iql-eqlqEfk-------Skim~qqa~Lqrel~raR~e~keaqe-----------~ke~~k~e 305 (1243)
T KOG0971|consen 250 DKAKLKELEKMK-----IQL-EQLQEFK-------SKIMEQQADLQRELKRARKEAKEAQE-----------AKERYKEE 305 (1243)
T ss_pred hHHHHHHHHHHH-----HHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 455666675532 111 2223333 44566777888888887777776654 45577777
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-CCCCchhhhHhhhhhhHHHHHHHHHHHHHHH
Q 006469 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS-DTLDSNSYLENSLSAKEKIISELNSELHNIE 324 (644)
Q Consensus 246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~-~~~~~~s~le~el~~ke~~i~~L~~e~~~L~ 324 (644)
.+..++-|||++-|-|.|..|+..|+.+++.|++.+....-+.++... +...+. .- ......+..+|+..|.+|.
T Consensus 306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~-~~---~~~ss~qfkqlEqqN~rLK 381 (1243)
T KOG0971|consen 306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS-DG---QAASSYQFKQLEQQNARLK 381 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC---cccchHHHHHHHHHHHHHH
Confidence 778888899999999999999999999999888888777665442110 000000 00 1223556899999999999
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccc-h-hhhhcchhh
Q 006469 325 TALSNEREQHMNEI---KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAE-D-WEVATNDEE 399 (644)
Q Consensus 325 ~~l~~~r~~~~~~~---~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~-~-~~~a~~~~~ 399 (644)
..|.++|+..+... .++...+..+..++.+|....+. ++++++++.++ .++= + .+.|.++
T Consensus 382 dalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~---------Lsr~~d~aEs~----iadlkEQVDAAlGA-- 446 (1243)
T KOG0971|consen 382 DALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKER---------LSRELDQAEST----IADLKEQVDAALGA-- 446 (1243)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------HHHHHHHHHHH----HHHHHHHHHHhhcH--
Confidence 99999999877664 66666777777777777766544 45566665554 1110 0 1122222
Q ss_pred hchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (644)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e 445 (644)
..++++ |.+||-.|+..+-.|+-.+.+|+. ++.+..++.+.+.+
T Consensus 447 E~MV~q-LtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~e 490 (1243)
T KOG0971|consen 447 EEMVEQ-LTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRE 490 (1243)
T ss_pred HHHHHH-HHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 257788 999999999999999988888764 34444555444433
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=99.01 E-value=0.00012 Score=88.73 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=62.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccc
Q 006469 409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELS 488 (644)
Q Consensus 409 ~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (644)
.+...+..++..++..........+.+......+..++.++...+..++.++..+... .
T Consensus 537 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~-~-------------------- 595 (880)
T PRK02224 537 ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERI-R-------------------- 595 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------------
Confidence 3444566666666666665555555555555555556666666666666666555421 1
Q ss_pred cccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 489 EKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (644)
Q Consensus 489 ~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk 545 (644)
....-+.-+....++++.+..+|+.........+..++.+++.+.
T Consensus 596 ------------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 596 ------------TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345556666666667776666666666777777777777664
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.00 E-value=2.4e-05 Score=97.01 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=18.5
Q ss_pred CCCchhhHHHHHHHHhhcChhHh
Q 006469 581 GFTSDIESKYKKMYEDDINPFAA 603 (644)
Q Consensus 581 ~~~~d~e~~Y~~~YE~~L~Pf~~ 603 (644)
++.+.++..|..+.+..|++...
T Consensus 528 ~dli~v~~~y~~Aie~~lg~~l~ 550 (1164)
T TIGR02169 528 AQLGSVGERYATAIEVAAGNRLN 550 (1164)
T ss_pred HHhcCcCHHHHHHHHHHhhhhhC
Confidence 55667778999999999998653
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.90 E-value=0.00018 Score=90.61 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=33.5
Q ss_pred hHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHH
Q 006469 20 PVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAES 64 (644)
Q Consensus 20 ~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~ 64 (644)
.|...+..| ..+ +.++..++....+|...+++.....+.+.+.
T Consensus 561 ~~~~~~~~~-~~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~ 603 (1311)
T TIGR00606 561 ELTSLLGYF-PNK-KQLEDWLHSKSKEINQTRDRLAKLNKELASL 603 (1311)
T ss_pred HHHHhcCCC-CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555577 666 8899999999999999998888888877553
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.89 E-value=0.0007 Score=82.03 Aligned_cols=205 Identities=15% Similarity=0.226 Sum_probs=92.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC----CCch------hhhHhhhhhhHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT----LDSN------SYLENSLSAKEKIISELNSEL 320 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~----~~~~------s~le~el~~ke~~i~~L~~e~ 320 (644)
+.++-+..+++.++.++..++.....++..|..+.........+- ++.. ..+...+......+..|..++
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 491 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666653111111111 1111 122222333333444555555
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhh-h---
Q 006469 321 HNIETALSNEREQH--MNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEV-A--- 394 (644)
Q Consensus 321 ~~L~~~l~~~r~~~--~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~-a--- 394 (644)
..+...+....... ..++..+...+......+......++.. ...|++++.++.-|+.- . .++.. +
T Consensus 492 ~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~--~~~~~~l~~e~~~l~~~-~-----~~~~~~~~~~ 563 (880)
T PRK02224 492 EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK--RERAEELRERAAELEAE-A-----EEKREAAAEA 563 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHH-H-----HHHHHHHHHH
Confidence 44444443332221 1222333333333333333333333332 35677777777776421 0 01000 0
Q ss_pred --cchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 395 --TNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 395 --~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
........+.. +..+...+.+++..+. ...++..++..+...+..+..++..++.....+...|..+..
T Consensus 564 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~ 634 (880)
T PRK02224 564 EEEAEEAREEVAE-LNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE 634 (880)
T ss_pred HhhhHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011222 3444445555566665 456666666666666666666666665555555555555543
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.00091 Score=80.97 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLR 278 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr 278 (644)
..+++-+...+...+..+..++.+...++
T Consensus 458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~~~ 486 (880)
T PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELE 486 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.85 E-value=3.7e-05 Score=81.74 Aligned_cols=287 Identities=18% Similarity=0.258 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 143 KIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVA 222 (644)
Q Consensus 143 k~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~ 222 (644)
|.++..||..|+.. ...++.|+.....|+.+....-... ......-...|..--..|..+|..+-....
T Consensus 3 K~eL~~LNdRla~Y---IekVr~LE~~N~~Le~~i~~~~~~~--------~~~~~~~~~~ye~el~~lr~~id~~~~eka 71 (312)
T PF00038_consen 3 KEELQSLNDRLASY---IEKVRFLEQENKRLESEIEELREKK--------GEEVSRIKEMYEEELRELRRQIDDLSKEKA 71 (312)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHhcc--------cccCcccccchhhHHHHhHHhhhhHHHHhh
Confidence 45677888888872 3367777777777766553222211 111111122344444566777887777788
Q ss_pred HHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-------C--
Q 006469 223 TMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG-------S-- 290 (644)
Q Consensus 223 ~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~-------~-- 290 (644)
.+....+..+.++.+++.+++.. ......++..+..+++.+......++.++..|..+|...+..-. .
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 88888888888888888888877 34556899999999999999999999999999999988765311 0
Q ss_pred --CCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469 291 --RNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS-NEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367 (644)
Q Consensus 291 --~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~-~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD 367 (644)
...++++.. -..+|.. .+.++..++........ .....+...+..+..........+..++.++... ...
T Consensus 152 ~~~~~~e~~~~--~~~dL~~---~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~--r~~ 224 (312)
T PF00038_consen 152 QSSVTVEVDQF--RSSDLSA---ALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKEL--RRQ 224 (312)
T ss_dssp -----------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred ccccceeeccc--ccccchh---hhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHH--Hhh
Confidence 111122211 1112322 25556656554443333 2223345555556555555545555555544433 244
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN 447 (644)
Q Consensus 368 YeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~ 447 (644)
+..+..+|.-|+.. ...|+.-|.+-...+..++..+...+..++.++..+..++.....+++
T Consensus 225 ~~~l~~el~~l~~~------------------~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 225 IQSLQAELESLRAK------------------NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccc------------------hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 55555555555532 346777788888888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 006469 448 EQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 448 ~~~~li~kLE~DL~~~~~ 465 (644)
++-...-.|+..|.+...
T Consensus 287 ~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 287 ELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 988888888888887654
No 10
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.76 E-value=0.0014 Score=77.22 Aligned_cols=112 Identities=22% Similarity=0.321 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER 331 (644)
Q Consensus 252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r 331 (644)
-++.+..+|.+..+.+..+..+.+.+-.+....+.+.. .+...+.+++.....|.+++.+|...|....
T Consensus 288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~-----------~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~ 356 (775)
T PF10174_consen 288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIE-----------VLKESLRAKEQEAEMLQSDVEALRFRLEEKN 356 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35566666666665566666655555555444433331 3445566777777778888877777775433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469 332 EQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (644)
Q Consensus 332 ~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~ 380 (644)
..+.+.+.++.....+...+..++..+ ..-|+--.+++.+|+.
T Consensus 357 ----~~l~kk~~~~~~~qeE~~~~~~Ei~~l--~d~~d~~e~ki~~Lq~ 399 (775)
T PF10174_consen 357 ----SQLEKKQAQIEKLQEEKSRLQGEIEDL--RDMLDKKERKINVLQK 399 (775)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 233334444444444445555555444 2334444445555553
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=0.0027 Score=80.13 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~ 542 (644)
........++.+++.+...+..+..+++....+|..++.+++
T Consensus 1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455666666777777777777777777777777777664
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.70 E-value=0.0021 Score=81.49 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=73.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccc
Q 006469 406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGT 485 (644)
Q Consensus 406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (644)
.|-.+-++...-|+..+....++..+++..+.+...+..++..+...+..+=..+..+.....
T Consensus 1432 ~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk----------------- 1494 (1930)
T KOG0161|consen 1432 ALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENK----------------- 1494 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 355666777777777777777777777777777777777766666666666555555543321
Q ss_pred ccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 486 ELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
...+.+.-++.|-+.+-.++.||+..++....++..|+..+..+..
T Consensus 1495 ---------------~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1495 ---------------NLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777777777777777777777777776666655
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.69 E-value=0.0005 Score=77.10 Aligned_cols=181 Identities=23% Similarity=0.273 Sum_probs=119.0
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 006469 247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETA 326 (644)
Q Consensus 247 ~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~ 326 (644)
.....|++.+..+|-.++.++...++.++-|+.+|..+.+.-. .+.++|.....+..+|...+......
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD-----------rt~aeLh~aRLe~aql~~qLad~~l~ 347 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRD-----------RTMAELHQARLEAAQLKLQLADASLE 347 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999999999987766542 34455665555566666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHH
Q 006469 327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESL 406 (644)
Q Consensus 327 l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~l 406 (644)
+...+..++.+...|..........+..|..+++... .-|.+=+.|=. .|+.=
T Consensus 348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e--~~lqEer~E~q-------------------------kL~~q 400 (546)
T PF07888_consen 348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLE--EHLQEERMERQ-------------------------KLEKQ 400 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHH-------------------------HHHHH
Confidence 5555555555555454333333333444444433321 12222222222 23332
Q ss_pred HHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 407 LLDKNRKME-HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 407 Ll~kNrkL~-~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
| .+-+... -.|...+..+.+++..+.-++.+...+..+.+++..-|.+||..|..+-+.
T Consensus 401 l-~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 401 L-GKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred H-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3 1222222 378888889999999999999999999999999999999999999998654
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.67 E-value=0.0039 Score=79.18 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458 (644)
Q Consensus 412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~ 458 (644)
+.++..|..++...+++......+..+...+..++.++...+...|.
T Consensus 1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~ 1287 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA 1287 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH
Confidence 55556666666666655555554444444444444444444444443
No 15
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.66 E-value=9.8e-05 Score=82.57 Aligned_cols=298 Identities=18% Similarity=0.220 Sum_probs=208.9
Q ss_pred HHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 144 IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223 (644)
Q Consensus 144 ~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~ 223 (644)
.++.++..++.++.+-+..++.++..++.++....+.-...-...++.....+.+..++|.++++.|.+.......++..
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999988877777777777777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhH
Q 006469 224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLE 303 (644)
Q Consensus 224 L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le 303 (644)
+......+|..+.+.......-......|+.....++.-+-..++.+..++..|..+.+.........++.......
T Consensus 201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~--- 277 (629)
T KOG0963|consen 201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKI--- 277 (629)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC---
Confidence 99999999999988877655555556788999999999999999999999999999999988876544322111111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccc
Q 006469 304 NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGY 383 (644)
Q Consensus 304 ~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf 383 (644)
-.+.+......++.++|..|...+...+.++...+.....++ ..|+.++... .+..+++++.|.--
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI-------~~le~~l~~~--~~~leel~~kL~~~----- 343 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQI-------SALEKELKAK--ISELEELKEKLNSR----- 343 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHhhh-----
Confidence 335666777888999999999999988888877776555444 4455555443 25667777776533
Q ss_pred CCcccchh--h--------hhcchhhhchhHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 384 NSIEAEDW--E--------VATNDEEMSKMESLLLDKNRKMEHE----LTQLKVKLSEKTSLLETAEGKIAELTAKINEQ 449 (644)
Q Consensus 384 ~~~d~~~~--~--------~a~~~~~~~~LE~lLl~kNrkL~~e----Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~ 449 (644)
+ |=++. + -+++ . ...-+. +--+.+++- ...|..++..|......+...+..+....+++
T Consensus 344 s--DYeeIK~ELsiLk~ief~~s-e-~a~~~~---~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el 416 (629)
T KOG0963|consen 344 S--DYEEIKKELSILKAIEFGDS-E-EANDED---ETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEEL 416 (629)
T ss_pred c--cHHHHHHHHHHHHHhhcCCc-c-cccccc---cccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhh
Confidence 2 11111 0 0111 1 011111 222334433 33444555555555555555555565556666
Q ss_pred HHHHHHHHHHHHhhcc
Q 006469 450 QKLIQKLEDDILKGYS 465 (644)
Q Consensus 450 ~~li~kLE~DL~~~~~ 465 (644)
...+.....=+.....
T Consensus 417 ~~~~~~~ke~i~klE~ 432 (629)
T KOG0963|consen 417 EAKATEQKELIAKLEQ 432 (629)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555555554444443
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.64 E-value=0.00069 Score=84.12 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=10.3
Q ss_pred CCCCCCCChHHHHHhh
Q 006469 12 KPNTSSSSPVSVISNF 27 (644)
Q Consensus 12 ~~~~~~~~~~~~a~~~ 27 (644)
.++|++-|++-.|+.|
T Consensus 30 G~NGsGKS~ildAi~~ 45 (1164)
T TIGR02169 30 GPNGSGKSNIGDAILF 45 (1164)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4455666777777764
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.58 E-value=0.0042 Score=73.18 Aligned_cols=32 Identities=44% Similarity=0.572 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (644)
Q Consensus 512 QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~ 543 (644)
-.||+...+.+++.+......+|..|..++..
T Consensus 570 EVERLl~~L~~~E~EK~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 570 EVERLLDILREAENEKNDKEKKIGELEKELEK 601 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555433
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.57 E-value=0.0078 Score=75.44 Aligned_cols=401 Identities=20% Similarity=0.260 Sum_probs=207.3
Q ss_pred hHHHHHHH----hhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHH-
Q 006469 87 YQEEVDNL----TKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS- 161 (644)
Q Consensus 87 yQ~EID~L----TkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~- 161 (644)
|..+|++| .+=.-.+|.....+|+++. .+..+.+.+..+...++.++.++..+|..+.+...
T Consensus 32 k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~-------------~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~ 98 (1822)
T KOG4674|consen 32 KSKDFESLKDEDGKTEVNHEQQLSELEKKIL-------------RLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSN 98 (1822)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44445443 3333345555555666644 12234446677788888888888888886665544
Q ss_pred ---HHHHHHHHHHHHHHHHHHhHH-HHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 162 ---TIRRLEERNRQLEQQMEEKVK-EIVEIKQRGLAE-ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236 (644)
Q Consensus 162 ---~~~~Lke~~~~le~~~e~~~~-~~v~~ke~el~~-~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~ 236 (644)
++.+++..+-.+.+.+.+... .+......++.. .++. ...--..|..++..+-..+-++.+...-.+...-
T Consensus 99 l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~----l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~v 174 (1822)
T KOG4674|consen 99 LSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEA----LESENKDLNDQLKSSTKTLSELEARLQETQSEDV 174 (1822)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566555555555544442 111122222221 1111 1122234556666666666666666555555444
Q ss_pred Hhhhcc---hHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhh
Q 006469 237 EVRAQS---DEERVAKQSEVNLLMDEVERAQTRLLSLQRE----KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAK 309 (644)
Q Consensus 237 ~~~~k~---~~~~~a~~aEleml~~dLEra~~R~~~lE~e----ne~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~k 309 (644)
..+.++ .++......+.-.|..||-..+..+..++++ +..|++.|........ .+.......
T Consensus 175 s~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~-----------~~q~~~~~l 243 (1822)
T KOG4674|consen 175 SSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLA-----------ELQEKNKSL 243 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 433332 2344556667777778888888888888888 8888888877665532 111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhcCCChhhH
Q 006469 310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALL---------------------IEKEAALEDMKKELQARPTSKMV 368 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l---------------------~~~~~~~~~L~~~l~~~~~~sDY 368 (644)
..+..+|..-+..+...+...+.+......++...+ .+....+.+++..+... ...|
T Consensus 244 ~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~--~~~~ 321 (1822)
T KOG4674|consen 244 KQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA--SERN 321 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh
Confidence 222333333333333333333333222222222222 22222222222222221 0111
Q ss_pred ------------------HHHHHHHHHHH-hcccCCcccchhhhhcchhhhchhH--HHHHHHhhhhhHHHHHHHHHHHH
Q 006469 369 ------------------DDLRKKVKILQ-AVGYNSIEAEDWEVATNDEEMSKME--SLLLDKNRKMEHELTQLKVKLSE 427 (644)
Q Consensus 369 ------------------eeiKrEL~iLk-~IEf~~~d~~~~~~a~~~~~~~~LE--~lLl~kNrkL~~eLt~lR~~~~~ 427 (644)
+.+..++.-|. .|+- +-+...++ ...+++. ..+..++.+....|+.++.....
T Consensus 322 ~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~----an~~~~~~--~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~ 395 (1822)
T KOG4674|consen 322 KENTDQLKELEQSLSKLNEKLEKKVSRLEGELED----ANDSLSAT--GESSMVSEKAALASSLIRPGSSLTKLYSKYSK 395 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHhh--cccchhhhHHHHHHhhcccchhHHHHHHHHHH
Confidence 11122222222 1111 11100110 1122333 45678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHH
Q 006469 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLK 507 (644)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~ 507 (644)
++..+..+.-++.++...+..+...+..+..-|........ ..+.-.-
T Consensus 396 ~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e--------------------------------~~~~~~~ 443 (1822)
T KOG4674|consen 396 LQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELE--------------------------------RMQETKA 443 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--------------------------------HHHHHHH
Confidence 99999999998888888888888888777776666554432 1222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (644)
Q Consensus 508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki 555 (644)
-+..++|-..+.+..++..+..+......+.+++..+..++-.|-.-|
T Consensus 444 ~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv 491 (1822)
T KOG4674|consen 444 ELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQV 491 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555554444444
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.56 E-value=0.002 Score=79.91 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=14.5
Q ss_pred HhhhcCCchhhHHHhhhhhh
Q 006469 611 QRYKELGIRDRITLSSGRFL 630 (644)
Q Consensus 611 r~~~~l~~~er~~l~~~r~v 630 (644)
.....||..++..+.+++++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~ 1104 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLF 1104 (1179)
T ss_pred ccccccCccHHHHHHHHHHH
Confidence 34566888888888887765
No 20
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.50 E-value=0.0041 Score=77.15 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHhhcC
Q 006469 585 DIESKYKKMYEDDIN 599 (644)
Q Consensus 585 d~e~~Y~~~YE~~L~ 599 (644)
.+...|..+.+..++
T Consensus 530 ~~~~~~~~a~~~~~g 544 (1179)
T TIGR02168 530 SVDEGYEAAIEAALG 544 (1179)
T ss_pred eeChhHHHHHHHHHH
Confidence 344567776665443
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.47 E-value=0.0048 Score=76.98 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=49.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccc----ccccc---CCCC
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE----KVISR---GSKK 573 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~----~~~~~---~~~~ 573 (644)
.....+..+..+....+.+..+++.++......+..+..++..++. ++.-++..... ..... ...+
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 515 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA-------RLDRLEAEQRASQGVRAVLEALESGLP 515 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhHHHHHHHHhccCC
Confidence 3444555566666666666666666666666666666666555554 22222211110 00000 0011
Q ss_pred ccccccCCCCchhhHHHHHHHHhhcChhHh
Q 006469 574 YAEDLESGFTSDIESKYKKMYEDDINPFAA 603 (644)
Q Consensus 574 ~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~ 603 (644)
|.. .+.++.+.+..+|..+.+..|+.=.+
T Consensus 516 Gv~-G~v~~li~v~~~y~~Aie~alG~~l~ 544 (1163)
T COG1196 516 GVY-GPVAELIKVKEKYETALEAALGNRLQ 544 (1163)
T ss_pred Ccc-chHHHhcCcChHHHHHHHHHcccccC
Confidence 110 11145566777999999999985433
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.41 E-value=0.018 Score=72.28 Aligned_cols=96 Identities=22% Similarity=0.281 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH----------------------HHHhh
Q 006469 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE----------------------ERVAK 249 (644)
Q Consensus 192 l~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~----------------------~~~a~ 249 (644)
..+.+.+-.+.|.+++..|..++......+..|...+.....++.++..+... +....
T Consensus 1086 ~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~ 1165 (1822)
T KOG4674|consen 1086 RHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIA 1165 (1822)
T ss_pred HHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHH
Confidence 34566677788999999999888888888888888777777666655443210 01112
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
..+++++..|.-+-++++..+++.++.|+.-|......
T Consensus 1166 ~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1166 ETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555556666666666666666666554433
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.35 E-value=0.0015 Score=69.39 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=79.5
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccc
Q 006469 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSE 481 (644)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~ 481 (644)
.++.....+-..+................++..+...+..+..++..++..+..||..|..++..
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~--------------- 252 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR--------------- 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH---------------
Confidence 34555555555566666666666666777777777777777777777777788888777766532
Q ss_pred ccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 006469 482 AGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL 551 (644)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kL 551 (644)
+..+++.|...+..|+.++......+.....++..|-...+.|
T Consensus 253 ---------------------------~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 253 ---------------------------LDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3577888899999999999999999988888888887765555
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.31 E-value=0.03 Score=70.25 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
+..-+...-+.+...+..++++...++.+++.+..-.
T Consensus 498 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 498 EEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445555566666666666666666665443
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=98.29 E-value=0.025 Score=68.54 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=10.5
Q ss_pred HhhhcCCchhhHHHhhh
Q 006469 611 QRYKELGIRDRITLSSG 627 (644)
Q Consensus 611 r~~~~l~~~er~~l~~~ 627 (644)
+.+..||..++..++++
T Consensus 784 ~~~~~lS~G~~~~~~la 800 (880)
T PRK03918 784 RPLTFLSGGERIALGLA 800 (880)
T ss_pred CChhhCCHhHHHHHHHH
Confidence 34556777777765555
No 26
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.27 E-value=0.0044 Score=69.75 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHH
Q 006469 143 KIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEI-------LQEREQALQDQL 214 (644)
Q Consensus 143 k~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~-------~~erE~~L~~ql 214 (644)
|.+|.+||+.|+. |. .++.|+.+.+.|+......-. .+.--...++..|+..+.. -...-..++..+
T Consensus 41 K~El~~LNDRLA~----YIekVR~LEaqN~~L~~di~~lr~-~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei 115 (546)
T KOG0977|consen 41 KKELQELNDRLAV----YIEKVRFLEAQNRKLEHDINLLRG-VVGRETSGIKAKYEAELATARKLLDETARERAKLEIEI 115 (546)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh-hccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888887 44 788888888877776532211 1100001122222222211 112223456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 215 ~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
..++..+++++..++.++......+.+.... .....+|+.++..+.....-.+..|-++|..|+.+|..++...
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7777777777777777766665555444322 3445677777777777777777777777777777777766554
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.26 E-value=0.0011 Score=67.96 Aligned_cols=148 Identities=17% Similarity=0.289 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 204 ~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
..+......++..++.+++++....+.+. .+|++. .--+.++..+|+++..|+..+|.++..|..+|..
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e-------~k~~E~----~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAE-------RKYEEV----ERKLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-------HHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 33444444555555555555555544333 333321 2336788999999999999999999999999998
Q ss_pred hhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006469 284 ANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARP 363 (644)
Q Consensus 284 a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~ 363 (644)
+..... +++..-.........+...+..|...|...-. .....+..+..+...+..|+..|...
T Consensus 153 ~~~~lk-----------~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~----Rae~aE~~v~~Le~~id~le~eL~~~- 216 (237)
T PF00261_consen 153 VGNNLK-----------SLEASEEKASEREDEYEEKIRDLEEKLKEAEN----RAEFAERRVKKLEKEIDRLEDELEKE- 216 (237)
T ss_dssp HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHH-----------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 876652 22222222222234455555555555543322 12223333344444555566666543
Q ss_pred ChhhHHHHHHHH-HHHH
Q 006469 364 TSKMVDDLRKKV-KILQ 379 (644)
Q Consensus 364 ~~sDYeeiKrEL-~iLk 379 (644)
...|..|+.+| .+|.
T Consensus 217 -k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 217 -KEKYKKVQEELDQTLN 232 (237)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 36789999998 5555
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.21 E-value=0.048 Score=68.41 Aligned_cols=378 Identities=16% Similarity=0.210 Sum_probs=166.3
Q ss_pred HhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 140 RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKD 219 (644)
Q Consensus 140 ~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~ 219 (644)
.+++.++..+...+..+..-...+..|...+...+...+..+ ..+..+-..+...+..-.+.|.+....+...+..+..
T Consensus 242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 320 (1201)
T PF12128_consen 242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQ-PELKEELNELNEELEKLEDEIKELRDELNKELSALNA 320 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333333333333333333322 3333444555556666666777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCch
Q 006469 220 SVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSN 299 (644)
Q Consensus 220 ~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~ 299 (644)
.+..+...++..+.+-.......=+......+.+.-+..+++..+.++..|......+..+..........
T Consensus 321 ~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~--------- 391 (1201)
T PF12128_consen 321 DLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE--------- 391 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 77777777776665555443322222333344444555555555555544444444444444332222100
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 006469 300 SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIE-KEAALEDMKKELQARPTSKMVDDLRKKVKIL 378 (644)
Q Consensus 300 s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~-~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iL 378 (644)
.. ...+..+..+...+.......+.........+...+.. .......+.. +-..++.++..|
T Consensus 392 -~~-------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~l 454 (1201)
T PF12128_consen 392 -AF-------NRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQE---------QREQLKSELAEL 454 (1201)
T ss_pred -HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 11 11222222222222222222223333233333222221 1111112221 223334444444
Q ss_pred HhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 379 QAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458 (644)
Q Consensus 379 k~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~ 458 (644)
+..--...-.++.-.. .......++. .-.........+..++..+..+....+.....+..+..++.+++.-+..|..
T Consensus 455 ~~~~~~~~~~~e~~~~-~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 532 (1201)
T PF12128_consen 455 KQQLKNPQYTEEEKEQ-LEQADKRLEQ-AQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQR 532 (1201)
T ss_pred HHHHhCcCCCHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321111111110000 0000112222 2333444555566666666666666666666666666666666666666666
Q ss_pred HHHhhcccCCCC-CCCCCCCcccccccc--------cccc----cc----ccC------CC-CCC-----CcchhHHHHH
Q 006469 459 DILKGYSSKDRK-GNVFDDWDLSEAGGT--------ELSE----KA----DKK------HT-YPD-----QDQSSMLKVI 509 (644)
Q Consensus 459 DL~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~----~~----~~~------~~-~~~-----~~~~siL~Iv 509 (644)
-|.-..++.-.. ....+||--...-+- ++.| ++ ..| .. .|+ .....-+..+
T Consensus 533 ~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~ 612 (1201)
T PF12128_consen 533 QLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQA 612 (1201)
T ss_pred hhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHH
Confidence 554333221000 001233321110000 0111 00 000 00 010 1233344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+..+-..+..++|+++......+..++.++...+.
T Consensus 613 ~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 649 (1201)
T PF12128_consen 613 EDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ 649 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887777777777766555
No 29
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.20 E-value=0.048 Score=68.26 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=22.5
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 247 ~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
.+...++.......++....+..++.+...+..++......
T Consensus 810 ~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~ 850 (1163)
T COG1196 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555566666666666666555555544433
No 30
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.19 E-value=0.032 Score=65.74 Aligned_cols=409 Identities=20% Similarity=0.201 Sum_probs=195.1
Q ss_pred ChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcH--HHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHh
Q 006469 32 DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIY 109 (644)
Q Consensus 32 dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~--ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y 109 (644)
-|+.+.+++-.--.++.+.=+.-+.-|-.|=..-++|.|+--+ +-+... .=.+.|-.|+|.|--+
T Consensus 178 elAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea-~ra~~yrdeldalre~------------ 244 (1195)
T KOG4643|consen 178 ELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA-HRADRYRDELDALREQ------------ 244 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHh------------
Confidence 3444444444444555555566777788888888888885322 222211 1245677777766544
Q ss_pred hhhhcCCCC--hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006469 110 QKLYEAPDP--YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEI 187 (644)
Q Consensus 110 ~~L~eaPDP--~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ 187 (644)
.|+||| .|-|--+.=...++.++...|+-|.++-.=|+.++.+++.|-.- -.++..+.++.+++..+-..+-
T Consensus 245 ---aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erd-- 318 (1195)
T KOG4643|consen 245 ---AERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERD-- 318 (1195)
T ss_pred ---hhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhh--
Confidence 468887 33332222234466677777888877777777777777766622 1155555555554433221111
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHH
Q 006469 188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQK---LHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQ 264 (644)
Q Consensus 188 ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~---~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~ 264 (644)
..+.|++.+...+..|+. .+......+..+....+.+.-+..-|.+-|+.
T Consensus 319 ---------------------tdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts------ 371 (1195)
T KOG4643|consen 319 ---------------------TDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS------ 371 (1195)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh------
Confidence 111111111111111111 11111111111111111122233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhh----hHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 006469 265 TRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSY----LENSLSAKEKIISELNSELHNIETALSNEREQHMN---E 337 (644)
Q Consensus 265 ~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~----le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~---~ 337 (644)
.|+..++.+|-.+-..|...++..-. +..+ ++.+-...+.++..|+..+..+-..+....+.... +
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~E-------e~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E 444 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYE-------ELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFE 444 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998887766311 0111 11111223444555555555544444333322211 1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhh
Q 006469 338 IKKLNALLIEKEAALEDM---KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKM 414 (644)
Q Consensus 338 ~~~L~~~l~~~~~~~~~L---~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL 414 (644)
..+|............+- ...+.+. .++|+++..+...|+.- .+.+-..|-.+
T Consensus 445 ~ekl~~e~~t~~~s~~rq~~e~e~~~q~--ls~~~Q~~~et~el~~~------------------iknlnk~L~~r---- 500 (1195)
T KOG4643|consen 445 LEKLLEETSTVTRSLSRQSLENEELDQL--LSLQDQLEAETEELLNQ------------------IKNLNKSLNNR---- 500 (1195)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH----
Confidence 122222222222211111 1111111 23444444444444410 11222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC
Q 006469 415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK 494 (644)
Q Consensus 415 ~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (644)
..+++.+-.....+...+......+..+...++++..+.--||..=..+..
T Consensus 501 ~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Llk----------------------------- 551 (1195)
T KOG4643|consen 501 DLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLK----------------------------- 551 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----------------------------
Confidence 223444444555555555555555555555555555554444443332221
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 495 HTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 495 ~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
--.-|.+-+.-+--|.+-|..+|-.-..+..-+.+|. .|+.-=-+|=++|-.
T Consensus 552 -------qI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~----alrrhke~LE~e~mn 603 (1195)
T KOG4643|consen 552 -------QIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN----ALRRHKEKLEEEIMN 603 (1195)
T ss_pred -------HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 1122444457788888888888888888888888877 344444467777633
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.15 E-value=0.031 Score=63.90 Aligned_cols=294 Identities=16% Similarity=0.211 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~---~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
..+|+.+..+....-+.+..+..+|..++..|..-. .......+..+.-++-...++..|-.++..|++.|..++..
T Consensus 115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555556666666655554332 22223444444445555555556666666666655554332
Q ss_pred cCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469 288 AGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367 (644)
Q Consensus 288 ~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD 367 (644)
... -+. ..-....+...+...+...+ ......+..|...+ .....|+.+|..- ..+
T Consensus 195 ~~e-----------Aee---e~~~~~~~~~~~~~~~~~~l----eeae~~l~~L~~e~----~~~k~Le~kL~~a--~~~ 250 (522)
T PF05701_consen 195 HIE-----------AEE---ERIEIAAEREQDAEEWEKEL----EEAEEELEELKEEL----EAAKDLESKLAEA--SAE 250 (522)
T ss_pred HHH-----------HHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHH
Confidence 210 000 00000112222223333322 22233333444333 2234455555442 356
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNR---KMEHELTQLKVKLSEKTSLLETAEGKIAELTA 444 (644)
Q Consensus 368 YeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNr---kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~ 444 (644)
...++.||...+.-+.....+.............++..=|-+-+. +...++..++.....|..+++....++..+..
T Consensus 251 l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 251 LESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665422221100000000000001111111222222 34577778888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 006469 445 KINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETE 524 (644)
Q Consensus 445 el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE 524 (644)
........+..|+.+|.................. ....+....|.-++..-+.++.......
T Consensus 331 ~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k------------------~~~~~l~~~Lqql~~Eae~Ak~ea~~~~ 392 (522)
T PF05701_consen 331 REKEASSEVSSLEAELNKTRSELEAAKAEEEKAK------------------EAMSELPKALQQLSSEAEEAKKEAEEAK 392 (522)
T ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776654320000000000 0112566667777777778877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006469 525 EEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 525 ~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.++......+...+..+..+..
T Consensus 393 ~E~~~~k~E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 393 EEVEKAKEEAEQTKAAIKTAEE 414 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666655
No 32
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.99 E-value=0.04 Score=63.41 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=32.5
Q ss_pred hHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 243 DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 243 ~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
..+..++..|+-|+..||-..+..+.+++.+..++-++.+..+..
T Consensus 154 e~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~ 198 (1265)
T KOG0976|consen 154 EDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKA 198 (1265)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888777777766666665555444
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.099 Score=62.88 Aligned_cols=166 Identities=16% Similarity=0.279 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN 336 (644)
Q Consensus 257 ~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~ 336 (644)
...|.+.++.+..|+++.+..+.+...+.... ......|..+..++..|...+..++..+..
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~p------------------e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e 465 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAP------------------EKARIEIQKCQTEIEQLEELLEKEERELDE 465 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCc------------------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777776655443332 222445677777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhH
Q 006469 337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH 416 (644)
Q Consensus 337 ~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~ 416 (644)
....+.+.-.....++..++.++... -.+..+.+.+++|..+ -|+ +|+.+--...+
T Consensus 466 ~~~~l~~~t~~~~~e~~~~ekel~~~--~~~~n~~~~e~~vaes---------------------el~-~L~~~~~~~~~ 521 (1293)
T KOG0996|consen 466 ILDSLKQETEGIREEIEKLEKELMPL--LKQVNEARSELDVAES---------------------ELD-ILLSRHETGLK 521 (1293)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHH
Confidence 66666665555555556666555543 2355555555555541 011 24444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 417 eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.+..+...+......+......+..+..++...+..+.+.+.+|.+..
T Consensus 522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 555555555555555555555555555555555555555555555443
No 34
>PRK01156 chromosome segregation protein; Provisional
Probab=97.90 E-value=0.13 Score=62.58 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
.+++-+...++..+.++..+..+...|+..+....
T Consensus 409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666677777777777776555444
No 35
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.16 Score=60.22 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=28.7
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHH
Q 006469 134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERN 170 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~ 170 (644)
..+.+++.-+.++++++.++..+.++-...+.|++.+
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql 717 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQL 717 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888888888888888887777777643
No 36
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.76 E-value=0.29 Score=62.22 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=15.5
Q ss_pred CCCch-hhHHHHHHHHhhcChhH
Q 006469 581 GFTSD-IESKYKKMYEDDINPFA 602 (644)
Q Consensus 581 ~~~~d-~e~~Y~~~YE~~L~Pf~ 602 (644)
++.++ |...|..++++.++|-.
T Consensus 688 sel~~~v~~~~~~~~~A~lg~~~ 710 (1486)
T PRK04863 688 SEIYDDVSLEDAPYFSALYGPAR 710 (1486)
T ss_pred hHhhhccCcchHHHHHHHHHhhh
Confidence 44455 77788888888887754
No 37
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.71 E-value=0.16 Score=61.48 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=65.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CC--CCCCCCC
Q 006469 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKD---RK--GNVFDDW 477 (644)
Q Consensus 403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~---~~--~~~~~~~ 477 (644)
++.-+--+-+-+++++......+..+ +|..-..+.....+.+.+.+....++++++..+..... .. ++.-..|
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~ 745 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN 745 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 44445555556677777777777666 55555666777777777777777777776666654321 00 0000000
Q ss_pred ccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 478 DLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV 536 (644)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~ 536 (644)
..- .......+..--+++|.+++-..-.-+..+|+.+.+.+..
T Consensus 746 ~l~----------------r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t 788 (1317)
T KOG0612|consen 746 ELR----------------RSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT 788 (1317)
T ss_pred hhh----------------hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc
Confidence 000 0012444555667777777777777777777755554443
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.70 E-value=0.18 Score=64.08 Aligned_cols=318 Identities=18% Similarity=0.235 Sum_probs=149.8
Q ss_pred HHHHHhHHHHHHHhh-------------hhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHH
Q 006469 82 SLLKGYQEEVDNLTK-------------RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEE 148 (644)
Q Consensus 82 ~LLK~yQ~EID~LTk-------------RsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~ 148 (644)
.+|..-+.|+|.+.. |--.+=+.|+++.=.+.=+|||.|.|..+..... +++..+..+..+...
T Consensus 786 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~---~~~~~l~~~~~~~~~ 862 (1486)
T PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRV---ELERALADHESQEQQ 862 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345555566666543 3333446788888888889999999987655433 233333333333333
Q ss_pred HHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 149 YRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLH 228 (644)
Q Consensus 149 l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~ 228 (644)
....+..++.+..-..+|.-.+.-| .++++..++.+.+.++.. ...+..=+......+
T Consensus 863 ~~~~~~~~~~~~~~l~~~~~~~~~l---~~~~~~~~~~~~~~~~~~-------------------~~~a~~y~~~~~~~L 920 (1486)
T PRK04863 863 QRSQLEQAKEGLSALNRLLPRLNLL---ADETLADRVEEIREQLDE-------------------AEEAKRFVQQHGNAL 920 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhchhhhhc---CCccHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Confidence 3333333333333322222211111 122233333332222221 111222233333333
Q ss_pred HHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhh
Q 006469 229 ELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA 308 (644)
Q Consensus 229 e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ 308 (644)
...+..|..++ |+. .+++.+..+.+-|.++...+.++.-.|..=.+-...-+-.....-.+.++.+-..+
T Consensus 921 ~qLE~~l~~L~--~Dp------~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~L-- 990 (1486)
T PRK04863 921 AQLEPIVSVLQ--SDP------EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKL-- 990 (1486)
T ss_pred HHHHHHHHHhC--CCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHH--
Confidence 43444444442 232 44566666777766666666666665554333222111111000001112221111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCccc
Q 006469 309 KEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEA 388 (644)
Q Consensus 309 ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~ 388 (644)
+..|.+++++...+...+ .+.+.+.......+..++..++.. ...|.+.+.+ |..+.+..+.+
T Consensus 991 -e~~Le~iE~~~~~areql-----------~qaq~q~~q~~q~l~slksslq~~--~e~L~E~eqe---~~~~g~~~~~~ 1053 (1486)
T PRK04863 991 -RQRLEQAEQERTRAREQL-----------RQAQAQLAQYNQVLASLKSSYDAK--RQMLQELKQE---LQDLGVPADSG 1053 (1486)
T ss_pred -HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHcCCCCCcc
Confidence 222333333333333222 222333333333333444433321 1233333333 33444433211
Q ss_pred chhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 389 EDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 389 ~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.|.-+..+-..|...|..-|.....+...+...+.++..+...+.........++..+..+..
T Consensus 1054 --------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863 1054 --------------AEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred --------------HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233444778888888888888888888888888888877777777777777777776664
No 39
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.69 E-value=0.2 Score=58.22 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=81.0
Q ss_pred hhHhHHHHHHHHHHHHhHhhhhHHHHH-HHH--HHH-HHHHHHHHHhHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHH
Q 006469 138 ENRKMKIELEEYRTEATHLKNQQSTIR-RLE--ERN-RQLEQQMEEKVKEIVEIKQRGLAEENQKTL---EILQEREQAL 210 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~lk~q~~~~~-~Lk--e~~-~~le~~~e~~~~~~v~~ke~el~~~~~ek~---~~~~erE~~L 210 (644)
.|..|+.++.+++.-|-.+.|.-.++. .|. ..+ ++|..++. .+..+-..+...+..|- ..|......+
T Consensus 161 QN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~-----~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 161 QNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG-----ELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 688999999999999999998875421 111 111 12222221 11112222222222221 1233333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD---EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~---~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
-..|......-.-+.+..++.+.+++-...-.+ ....--...++|.+.+|..++.++..+...|++|+.+|......
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 445555544445555555665555442211111 11111235678899999999999999999999999999865443
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.68 E-value=0.18 Score=59.04 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=43.9
Q ss_pred HHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 407 LLDKNRKME----HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 407 Ll~kNrkL~----~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
|.+-|+.++ .+|..+..-.-++..+.+..++-+-...+.|-+++.+++.|-..|....+
T Consensus 484 L~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 484 LQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777655 44455555566777888888888888888899999999999877766654
No 41
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.15 Score=55.69 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=116.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHH
Q 006469 88 QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLE 167 (644)
Q Consensus 88 Q~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lk 167 (644)
-..+|.+.+-++. |..|.... ..--||+|.|.+.-=.+ .-+.|+..+.+++++...-.+..+...+.|..|+
T Consensus 190 ~~~ld~wg~~~~t-~~df~f~~-t~dPa~p~~p~~~~pas------se~ee~eel~eq~eeneel~ae~kqh~v~~~ale 261 (521)
T KOG1937|consen 190 RKWLDQWGNSSHT-EKDFNFKL-TDDPALPPKPIFAKPAS------SEEEEVEELTEQNEENEELQAEYKQHLVEYKALE 261 (521)
T ss_pred hhHHHHHhccCCc-ccccccee-cCCCCCCCccccCCCcc------ccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4578888877777 55554443 34457788887543211 1234567777777777666777777777888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 006469 168 ERNRQLEQQMEEKVKEIVEIKQR--GLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE 245 (644)
Q Consensus 168 e~~~~le~~~e~~~~~~v~~ke~--el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~ 245 (644)
++-..++....+. +..+..++. +.-+.-......+..+-..++.++..+..+....+-.+...-..|.+.....+.+
T Consensus 262 s~~sq~~e~~sel-E~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e 340 (521)
T KOG1937|consen 262 SKRSQFEEQNSEL-EKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE 340 (521)
T ss_pred hhhHHHHHHHHHH-HHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch
Confidence 7766654432211 122222222 2222333334444555555666666666666666666655555554443322222
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
. .....+.-+..||+.+.+++..=|..++.|+.+|+..-.+.
T Consensus 341 ~-~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv 382 (521)
T KOG1937|consen 341 D-EEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDV 382 (521)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchh
Confidence 1 22578888999999999999988899999999988755544
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.61 E-value=0.032 Score=62.97 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=52.1
Q ss_pred hhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHH-hhhhhhHhhHhHHHHHHHHHHHHhHhh
Q 006469 79 LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDL-KLSELESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 79 ~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~-~~~~le~e~~~Lk~el~~l~~e~a~lk 157 (644)
.+.-=++.-+.||+.|-++--.++..-..+=..+.+.-++..-|++-..... +...+++++..|+.++..+..+|..++
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333344445566666665555555555555555555555555555444332 334688889999999999888888888
Q ss_pred hhHHH
Q 006469 158 NQQST 162 (644)
Q Consensus 158 ~q~~~ 162 (644)
.+...
T Consensus 190 ~~ld~ 194 (546)
T KOG0977|consen 190 KQLDD 194 (546)
T ss_pred HHHHH
Confidence 76653
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.59 E-value=0.23 Score=56.33 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
|.+.+.+...+-+.+.........++..|..++..+..-+++-+....+|+.+|....
T Consensus 348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~ 405 (546)
T PF07888_consen 348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK 405 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566777777777666666678888999999999999999999999999986543
No 44
>PRK11281 hypothetical protein; Provisional
Probab=97.57 E-value=0.15 Score=62.88 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER 331 (644)
Q Consensus 252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r 331 (644)
.+--+..-.|||+.++.+...|..+++.+|........+ ........+..++...+.++.-++.+... .....
T Consensus 150 qLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~---l~~~~~~~l~ae~~~l~~~~~~~~~~l~~----~~~l~ 222 (1113)
T PRK11281 150 QLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA---LRPSQRVLLQAEQALLNAQNDLQRKSLEG----NTQLQ 222 (1113)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---CCHHHHHHHHHHHHHHHHHHHHHHHHHhc----chHHH
Confidence 344455668899999999999999999988653322211 00111123444444444443333322221 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHh
Q 006469 332 EQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKN 411 (644)
Q Consensus 332 ~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kN 411 (644)
+-...+..-+..++......++.|+..+... --.+-...+ +..+- .+.. ......++=+-+++.|
T Consensus 223 ~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k----r~~~se~~~---~~a~~--~~~~------~~~~~~p~i~~~~~~N 287 (1113)
T PRK11281 223 DLLQKQRDYLTARIQRLEHQLQLLQEAINSK----RLTLSEKTV---QEAQS--QDEA------ARIQANPLVAQELEIN 287 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHhh--hhhh------cccCCChHHHHHHHHH
Confidence 1111111222222233333333333333321 000101111 11100 0000 0011234444467889
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453 (644)
Q Consensus 412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li 453 (644)
++|...|...-...+.+..+.......+..+.+.....++-+
T Consensus 288 ~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 288 LQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888777777777777777777666655444443
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.55 E-value=0.044 Score=62.99 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=36.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQK 455 (644)
Q Consensus 403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~k 455 (644)
++. +..+++.++.++..|.....++..++..+..++..+..++.+.......
T Consensus 353 i~~-~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 353 LIT-LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 6667778888888888887777777777777777776666666555544
No 46
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.51 E-value=0.3 Score=55.76 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=30.7
Q ss_pred HHh-hhcCCchhhHHHhhhhhhhcchhhhHhHhhcC
Q 006469 610 DQR-YKELGIRDRITLSSGRFLLGNKYNLLYLFLFS 644 (644)
Q Consensus 610 ~r~-~~~l~~~er~~l~~~r~vL~nr~~R~~f~~Y~ 644 (644)
.|+ .+.++.+|.+.+.+|.|+=.....|.||+|||
T Consensus 470 ~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~ 505 (511)
T PF09787_consen 470 ARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYM 505 (511)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHH
Confidence 444 45588999999999999999999999999996
No 47
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.50 E-value=6.2e-05 Score=89.11 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE 330 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~ 330 (644)
.+.+....+|..++..+...+..+..|..+|.......... ..+...-..|..|+.+|.++.+.+..+
T Consensus 209 ~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~------------k~l~~ql~~i~~LE~en~~l~~Elk~L 276 (722)
T PF05557_consen 209 QEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEIN------------KELKEQLAHIRELEKENRRLREELKHL 276 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666667777777777765544443111 011111123777888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCChhhHHHHHHHHHHHHhcccCCcc-cch-hhhhcchhhhchhHH
Q 006469 331 REQHMNEIKKLNALLIEKEAALEDMK---KELQARPTSKMVDDLRKKVKILQAVGYNSIE-AED-WEVATNDEEMSKMES 405 (644)
Q Consensus 331 r~~~~~~~~~L~~~l~~~~~~~~~L~---~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d-~~~-~~~a~~~~~~~~LE~ 405 (644)
+..+.+. .-|+.+...+...+..++ .++..+ .-.+..|..++.--.++--..+. -+. ++.+..-..-..=..
T Consensus 277 r~~~~n~-elLeEe~~sLq~kl~~~E~~~~el~~l--q~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~ 353 (722)
T PF05557_consen 277 RQSQENV-ELLEEEKRSLQRKLERLEELEEELAEL--QLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENA 353 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 7655432 223333333222222222 111111 11233334443333322111000 000 000000000011155
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.|++++..++.++..++..+.++..++..+...+..+...+.....++.+||..+.-+..
T Consensus 354 ~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~k 413 (722)
T PF05557_consen 354 SLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATK 413 (722)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999887765553
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.45 E-value=0.12 Score=60.79 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=32.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
|.+||..|++-|..--.-..+|=..|-....++.-+...+-..+..|..|-..|..+-..
T Consensus 599 mqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 599 MQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666777777777654444444555555555555555555555555555555544444443
No 49
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.45 E-value=0.36 Score=55.27 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccc
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~ 564 (644)
...........+..+......+.....++.....++...+..=-.-...|+-|+.+...
T Consensus 388 a~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~ 446 (522)
T PF05701_consen 388 AEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESS 446 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34444455555555555556666666666666666666666555555588888776543
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.45 E-value=0.22 Score=57.23 Aligned_cols=66 Identities=8% Similarity=0.128 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
.++.++..+..+...++..++..+.++.++.. +++.+...|..++..+..++...+.+...+...+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~-----------~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVM-----------DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444455555544545544432 2233334455666666667777777776666654
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.44 E-value=0.38 Score=55.90 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 432 l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
++....++..+...++.+..-|..|...|..+..
T Consensus 281 ~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 281 LEMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 3455566677777788888888888888876543
No 52
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.41 E-value=3.4e-05 Score=92.58 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHH
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~ 257 (644)
.|..+++.-......++..+...+.+|.+|+.+|+.+......+++-..
T Consensus 275 ~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaK 323 (859)
T PF01576_consen 275 QLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAK 323 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444555444555566666677777888888888877555455544333
No 53
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.34 E-value=0.53 Score=55.29 Aligned_cols=235 Identities=18% Similarity=0.215 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHhHHHHHHHHHHHHH-------HHHHHHHH
Q 006469 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQT-------RLLSLQRE 273 (644)
Q Consensus 204 ~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~---~a~~aEleml~~dLEra~~-------R~~~lE~e 273 (644)
..+|..|..++..++..++.++..+..++.+...+...+.+.. .....+..-+..|+--... ...+||-+
T Consensus 26 a~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeE 105 (717)
T PF09730_consen 26 ASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEE 105 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4566677777777777777777777777766655543322221 1111222233333332222 23356666
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 274 KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALE 353 (644)
Q Consensus 274 ne~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~ 353 (644)
|=.|..+++..+++- .+ .....-+|.+|.+|+.-|...++.+-.-.. -.+ +.+...+.
T Consensus 106 NislQKqvs~Lk~sQ-------------ve--fE~~Khei~rl~Ee~~~l~~qlee~~rLk~----iae---~qleEALe 163 (717)
T PF09730_consen 106 NISLQKQVSVLKQSQ-------------VE--FEGLKHEIKRLEEEIELLNSQLEEAARLKE----IAE---KQLEEALE 163 (717)
T ss_pred HHHHHHHHHHHHHhH-------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHH
Confidence 666666666555442 11 112234566777777776666654322211 111 12223455
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhccc----------------CCc-------ccchhh--hh---c------ch--
Q 006469 354 DMKKELQARPTSKMVDDLRKKVKILQAVGY----------------NSI-------EAEDWE--VA---T------ND-- 397 (644)
Q Consensus 354 ~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf----------------~~~-------d~~~~~--~a---~------~~-- 397 (644)
.|+.+.+. =-.+|+||.....++- ... ++|++. +. . .|
T Consensus 164 sl~~EReq------k~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 237 (717)
T PF09730_consen 164 SLKSEREQ------KNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDN 237 (717)
T ss_pred HHHHHHHH------HHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhccccccc
Confidence 55555443 2567777777444321 110 011110 00 0 00
Q ss_pred --------hh--h-ch-hHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 398 --------EE--M-SK-MESLLL----DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 398 --------~~--~-~~-LE~lLl----~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
.. + .+ +.-|+- .=-.+|..+|.........|...++..+.++......++++...|..|-..|.
T Consensus 238 ~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~ 317 (717)
T PF09730_consen 238 RMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLD 317 (717)
T ss_pred ccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 11 233333 33478999999999999999999999999999999999999999999999999
Q ss_pred hhccc
Q 006469 462 KGYSS 466 (644)
Q Consensus 462 ~~~~~ 466 (644)
.+...
T Consensus 318 aL~~l 322 (717)
T PF09730_consen 318 ALRKL 322 (717)
T ss_pred HHhhh
Confidence 88763
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.33 E-value=0.57 Score=56.49 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=11.9
Q ss_pred hHHHHHHHHhhcChhH
Q 006469 587 ESKYKKMYEDDINPFA 602 (644)
Q Consensus 587 e~~Y~~~YE~~L~Pf~ 602 (644)
+++|..++|..|+-.+
T Consensus 507 ~~KWa~aIE~~L~n~l 522 (1074)
T KOG0250|consen 507 EPKWALAIERCLGNLL 522 (1074)
T ss_pred CcHHHHHHHHHHHHhh
Confidence 4599999998776443
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.26 E-value=0.48 Score=57.06 Aligned_cols=179 Identities=18% Similarity=0.300 Sum_probs=89.9
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ 213 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~q 213 (644)
..+.++..++.++.+++..+..+. ...-+.+++..|..+ ..=..|..++..+... .+.+...+++...++++
T Consensus 232 ~~~e~i~~l~k~i~e~~e~~~~~~----~~e~~~~~l~~Lk~k---~~W~~V~~~~~ql~~~-~~~i~~~qek~~~l~~k 303 (1074)
T KOG0250|consen 232 LKEEEIKNLKKKIKEEEEKLDNLE----QLEDLKENLEQLKAK---MAWAWVNEVERQLNNQ-EEEIKKKQEKVDTLQEK 303 (1074)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344555556666665555555432 122233333333333 3445566666666643 33445556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 006469 214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQT--------------RLLSLQREKDLLRS 279 (644)
Q Consensus 214 l~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~--------------R~~~lE~ene~Lr~ 279 (644)
++....++.+++..+..-+.++..+... ..+...|++-+..|+..+.. .+..+..++..|+.
T Consensus 304 i~~~~~k~~~~r~k~teiea~i~~~~~e----~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k 379 (1074)
T KOG0250|consen 304 IEEKQGKIEEARQKLTEIEAKIGELKDE----VDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK 379 (1074)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666555555554332 22333444444444433322 22333333334444
Q ss_pred HHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 280 QLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQH 334 (644)
Q Consensus 280 eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~ 334 (644)
+++.++.... -.+..++...+.++..|..++..++..+.+++...
T Consensus 380 ~I~~~~~~~~----------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 380 QIADLEKQTN----------NELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHH----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333220 03334455556667777777777666555555443
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.23 E-value=0.16 Score=51.89 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
++..++...+..|.+++...+.++..+. ......|+.-|..++..|+.|+..|+.+...|..++..
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~---------~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~----- 121 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLS---------AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEK----- 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4556666667777777777766654441 22335677888888888888888888887777766433
Q ss_pred CCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Q 006469 289 GSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMV 368 (644)
Q Consensus 289 ~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDY 368 (644)
++.+|..+...+..++..+...+......+..+.++.........+|..++..- -.+-|
T Consensus 122 --------------------l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~e-ll~~y 180 (239)
T COG1579 122 --------------------LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE-LLSEY 180 (239)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHH
Confidence 355688888888888888888888888889999888888888888888877642 14567
Q ss_pred HHHHH
Q 006469 369 DDLRK 373 (644)
Q Consensus 369 eeiKr 373 (644)
+-|++
T Consensus 181 eri~~ 185 (239)
T COG1579 181 ERIRK 185 (239)
T ss_pred HHHHh
Confidence 76554
No 57
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.67 Score=53.40 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcc
Q 006469 517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (644)
Q Consensus 517 r~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy 561 (644)
..++.+|.+.|+.......-+..++.-|..-+.+.|-=..-++.|
T Consensus 383 ~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~ 427 (716)
T KOG4593|consen 383 ETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEE 427 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 345555666666666555655666655655555555444444444
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.16 Score=59.89 Aligned_cols=104 Identities=25% Similarity=0.329 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhh--------------hHHHHHHHHHHHHHHHHH
Q 006469 261 ERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA--------------KEKIISELNSELHNIETA 326 (644)
Q Consensus 261 Era~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~--------------ke~~i~~L~~e~~~L~~~ 326 (644)
|.-.+|..+||.|...||.+|........ .++.++.. .=..++-|.+.+.+|+.+
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~-----------~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIR-----------ELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENS 609 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777777777777765444321 12221110 001133455555566655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 006469 327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 327 l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~I 381 (644)
|..+-.- .-+|=..|.+...+++-++..+.+. -.++.+||..|.-|-+|
T Consensus 610 LsaEtri----KldLfsaLg~akrq~ei~~~~~~~~--d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 610 LSAETRI----KLDLFSALGDAKRQLEIAQGQLRKK--DKEIEELKAKIAQLLAV 658 (697)
T ss_pred hhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence 5443221 1334444566666677777777766 36888888888777766
No 59
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.21 E-value=7.9e-05 Score=89.46 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHhhcCCcH--HHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhh
Q 006469 54 SQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKL 112 (644)
Q Consensus 54 s~~sRK~La~~Tk~Fkk~~~~--ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L 112 (644)
+...+|.|=..-.+++.--++ .-+..+.....-+++||+.|++.--.+|+.+..+-+.-
T Consensus 178 ~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k 238 (859)
T PF01576_consen 178 AEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREK 238 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666653333 34667777788899999999999999999888887643
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.20 E-value=0.34 Score=49.70 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHH
Q 006469 367 MVDDLRKKVKILQ 379 (644)
Q Consensus 367 DYeeiKrEL~iLk 379 (644)
-|+++-+.|.++.
T Consensus 114 k~~E~~rkl~~~E 126 (237)
T PF00261_consen 114 KYEEVERKLKVLE 126 (237)
T ss_dssp HHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5888888888776
No 61
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.19 E-value=0.39 Score=50.16 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=39.5
Q ss_pred chHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 242 ~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
|.......-+|-.|+.+.||.-.+--..||.+++..|..|++|-.+.
T Consensus 61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~ 107 (305)
T PF14915_consen 61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH 107 (305)
T ss_pred HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44444555678899999999999999999999999999999988764
No 62
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.19 E-value=0.88 Score=54.10 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=90.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHH
Q 006469 188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRL 267 (644)
Q Consensus 188 ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~ 267 (644)
.++-++..+-.+...|......|+.+|..+...+..+.+...+.-.-|.+-.. .......+-.-+-.|+.-...|+
T Consensus 68 ~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~----~i~~l~~~~~~~e~~~~~l~~~l 143 (769)
T PF05911_consen 68 QEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEK----LIAELSEEKSQAEAEIEDLMARL 143 (769)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444445555556666666677777777777776666655543332321111 11111222233344555666789
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 268 LSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIE 347 (644)
Q Consensus 268 ~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~ 347 (644)
..+|++|..|+-++-.. .++-+|.-.+-++.+-. .+....++-.-+.+ +..
T Consensus 144 ~~~eken~~Lkye~~~~-----------------------~keleir~~E~~~~~~~--ae~a~kqhle~vkk----iak 194 (769)
T PF05911_consen 144 ESTEKENSSLKYELHVL-----------------------SKELEIRNEEREYSRRA--AEAASKQHLESVKK----IAK 194 (769)
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHH----HHH
Confidence 99999999999887432 33334444444443321 22222233222222 244
Q ss_pred HHHHHHHHHHHHhcC-CChhhHHHHHHHHHHH
Q 006469 348 KEAALEDMKKELQAR-PTSKMVDDLRKKVKIL 378 (644)
Q Consensus 348 ~~~~~~~L~~~l~~~-~~~sDYeeiKrEL~iL 378 (644)
++.+...|...+.+. |.++-...+|.|+..|
T Consensus 195 LEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 195 LEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 455677888887754 9999999999999999
No 63
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=1 Score=54.57 Aligned_cols=62 Identities=27% Similarity=0.200 Sum_probs=42.5
Q ss_pred hhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCC--cHHHHHhhHHHHHHhHHHHH
Q 006469 28 WKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKAS--PEEKLSLFNSLLKGYQEEVD 92 (644)
Q Consensus 28 W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~--~~ekl~~~~~LLK~yQ~EID 92 (644)
|+.+. .|..+-..-..|+..+......+..|-+....|.-.. --+|...++.-+|.++.+++
T Consensus 320 ~~~~~---~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~k 383 (1293)
T KOG0996|consen 320 KKNKL---CQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELK 383 (1293)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 2444555677888888888888888888888887433 33667777777776666554
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=1 Score=53.71 Aligned_cols=252 Identities=17% Similarity=0.252 Sum_probs=132.1
Q ss_pred HhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHH
Q 006469 237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISEL 316 (644)
Q Consensus 237 ~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L 316 (644)
..+....+.+....++++-+..+.++....+.+++.....|+.+.+++...-. ....+.-..+-+|.+|
T Consensus 244 ~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t-----------~~~k~kt~lel~~kdl 312 (1200)
T KOG0964|consen 244 EDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET-----------KISKKKTKLELKIKDL 312 (1200)
T ss_pred HHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhhhhHHH
Confidence 33334444444555666666777777777777777777777776665543321 1111111223445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcc
Q 006469 317 NSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATN 396 (644)
Q Consensus 317 ~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~ 396 (644)
..++..-.. .+...-....++...+.+...++..++-+-+++ ...-+..+..|..|+.- . -+- .+-.
T Consensus 313 q~~i~~n~q----~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l--~~ee~~~~~rl~~l~~~----~--~~l-~~Kq 379 (1200)
T KOG0964|consen 313 QDQITGNEQ----QRNLALHVLQKVKDKIEEKKDELSKIEPKYNSL--VDEEKRLKKRLAKLEQK----Q--RDL-LAKQ 379 (1200)
T ss_pred HHHhhhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HhHHHHHHHHHHHHHHH----H--HHH-HHhh
Confidence 555543221 111122222333333333333333333332222 11122233334444321 0 000 0000
Q ss_pred hhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 006469 397 DEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDD 476 (644)
Q Consensus 397 ~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~ 476 (644)
|. ..-.- .--+|.+=+.+++-.+..-+.+....-..++.++..++.++.+.-..+.+|+..|........
T Consensus 380 gr-~sqFs-sk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~-------- 449 (1200)
T KOG0964|consen 380 GR-YSQFS-SKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRME-------- 449 (1200)
T ss_pred cc-ccccC-cHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH--------
Confidence 00 00000 124677788999999999999999999999999999999999999999999888764432111
Q ss_pred CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.......-++..+|..-.+-.+|=.+-.+++..+..++..++.-+.
T Consensus 450 ------------------------~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 450 ------------------------EFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344455555555555555555555555555555555554444
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.13 E-value=0.0035 Score=74.38 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHH
Q 006469 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKV 508 (644)
Q Consensus 429 ~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~I 508 (644)
..++..|+.++..++.++..++..+..||..|...+-... ++. ..+.+..- .+++.....-|
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~-----~~~------~~trVL~l-------r~NP~~~~~~~ 563 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGE-----FNP------SKTRVLHL-------RDNPTSKAEQI 563 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------BT------TTEEEEEE-------SS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----cCC------CCceeeee-------CCCcHHHHHHH
Confidence 4567778888888888888888888888888886431000 000 01111110 01234455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhhhhHhh
Q 006469 509 ICNQRDRFRARLRETEEEVRQ-------------------LKEKIGVLTAELEKTKADNVQL 551 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~-------------------~~~~i~~lr~E~~~Lk~DN~kL 551 (644)
-.+..+.++..|..|...++. ....+..|+.++.++.+-|..|
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL 625 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL 625 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887732 2345677888888888744433
No 66
>PRK11637 AmiB activator; Provisional
Probab=97.11 E-value=0.22 Score=55.48 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 006469 346 IEKEAALEDMKKELQ 360 (644)
Q Consensus 346 ~~~~~~~~~L~~~l~ 360 (644)
......+..++..+.
T Consensus 106 ~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 106 DELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444333
No 67
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.10 E-value=0.33 Score=47.63 Aligned_cols=123 Identities=16% Similarity=0.328 Sum_probs=73.7
Q ss_pred hHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLR 215 (644)
Q Consensus 136 e~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~ 215 (644)
+.++..|++.+.-++.++..+.-.+.+ +.+++.++++...+. +... ..+..+-..+..++.
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~---a~~KL~Eaeq~~dE~--------er~~--------Kv~enr~~kdEE~~e 63 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLAT---ALQKLEEAEQAADES--------ERGM--------KVIENRAQKLEEKME 63 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcccHH--------HHHH--------HHHHHHHHhhHHHHH
Confidence 446777777777777777776544444 445555554433111 1111 111222233444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 216 ~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
.++.++++.+.--+ +...+|++- .--|-|+..|||++..|+...+....+|-+++....++.
T Consensus 64 ~~e~qLkEAk~iaE-------~adrK~eEV----arkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl 125 (205)
T KOG1003|consen 64 AQEAQLKEAKHIAE-------KADRKYEEV----ARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL 125 (205)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 55555555443333 333344322 234689999999999999999999999999998876665
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.06 E-value=0.91 Score=52.04 Aligned_cols=186 Identities=14% Similarity=0.150 Sum_probs=98.7
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhh--hhhhHhhHhHHHHHHHHHHHHhHhhhhHH-HHHHH
Q 006469 90 EVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKL--SELESENRKMKIELEEYRTEATHLKNQQS-TIRRL 166 (644)
Q Consensus 90 EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~--~~le~e~~~Lk~el~~l~~e~a~lk~q~~-~~~~L 166 (644)
-||.|-.|.-.-+.+|=++|+.|--+- .|. .+. ++. +.+-..+..||..+..-+...+.-..+.. +|+.|
T Consensus 545 ~~~~le~~~~a~qat~d~a~~Dlqk~n----rlk--Qde-ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~L 617 (961)
T KOG4673|consen 545 LAAALEAQALAEQATNDEARSDLQKEN----RLK--QDE-ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDL 617 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHh----hhh--hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777888888887442110 111 000 000 01112233333333322222222111111 45555
Q ss_pred HHHHHHHHHHHHHhHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 167 EERNRQLEQQMEEKVKE-------IVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVR 239 (644)
Q Consensus 167 ke~~~~le~~~e~~~~~-------~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~ 239 (644)
..|+...|..-++.++. -+-.. ..|++.+...-..|+.-|+.|..+|..-+-.+..+.-.--..-.+|+..+
T Consensus 618 qrRlqaaE~R~eel~q~v~~TTrPLlRQI-E~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~ 696 (961)
T KOG4673|consen 618 QRRLQAAERRCEELIQQVPETTRPLLRQI-EALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLN 696 (961)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 55555555555444431 12111 23566777777889888999999888666555544333322333566676
Q ss_pred hcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 240 AQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 240 ~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
+..... ..-..+|-.-+..-++.+..|+...+.++-.+..++..
T Consensus 697 ~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~ 743 (961)
T KOG4673|consen 697 FSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADT 743 (961)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 665433 22334666677777777777877777777777666543
No 69
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.97 E-value=1.6 Score=53.32 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=24.5
Q ss_pred HHHHhHHhhcCCcHHHHHhhH---HHHHHhHHHHHHHhhhhhhhH
Q 006469 61 LAESTRDFKKASPEEKLSLFN---SLLKGYQEEVDNLTKRAKFGE 102 (644)
Q Consensus 61 La~~Tk~Fkk~~~~ekl~~~~---~LLK~yQ~EID~LTkRsK~aE 102 (644)
|...+++-+++. ++...++ .+.|-++..|-.|+.+-...-
T Consensus 443 l~~~~~~~~~~~--~~~~~~~~~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 443 LVNEMQEKEKLD--EKCQAVAELEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred hhhHHHHhhhHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555433 3444444 678888988888877655443
No 70
>PRK11637 AmiB activator; Provisional
Probab=96.86 E-value=1.1 Score=49.89 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 418 LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 418 Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
...+..+..++...+..++.+...+.....+.+.++.+|+.++
T Consensus 186 k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~ 228 (428)
T PRK11637 186 KAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSL 228 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444433
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.75 E-value=2.2 Score=51.67 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC
Q 006469 415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK 494 (644)
Q Consensus 415 ~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (644)
.+.-..+..+.++....|+..+......+.-++.....+.--.++|..+++...
T Consensus 1555 ~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~-------------------------- 1608 (1758)
T KOG0994|consen 1555 RSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETA-------------------------- 1608 (1758)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 333334444444444444444444444555566666666666777777765432
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccc
Q 006469 495 HTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562 (644)
Q Consensus 495 ~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~ 562 (644)
.....+.-.+.|...|..++.+|..+..+.-.........+.+.+.--+.--.+.+-||+|.
T Consensus 1609 ------~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1609 ------AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334455566777777777777776665544444333333333332222222444555554
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=2.3 Score=50.97 Aligned_cols=258 Identities=16% Similarity=0.251 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 141 KMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAE-ENQKTLEILQEREQALQDQLRQAKD 219 (644)
Q Consensus 141 ~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~-~~~ek~~~~~erE~~L~~ql~~ae~ 219 (644)
..+.++...+.+++++..+..++.....+.+.+.++++-......- .+..+.. .+.. ..+.-..+.+.+...+.
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l-~~~r~~~~e~~~----~~~~~~~~~e~v~e~~~ 755 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELAL-LEKRLEQNEFHK----LLDDLKELLEEVEESEQ 755 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcChHhh----HHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777777777777766544432221 1111111 1100 01111223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCc
Q 006469 220 SVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA-QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDS 298 (644)
Q Consensus 220 ~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra-~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~ 298 (644)
+|++....+...+..+-.+... +.|...- ..|+.+++++...+...+++....
T Consensus 756 ~Ike~~~~~k~~~~~i~~lE~~---------------~~d~~~~re~rlkdl~keik~~k~~~e~~~~~----------- 809 (1174)
T KOG0933|consen 756 QIKEKERALKKCEDKISTLEKK---------------MKDAKANRERRLKDLEKEIKTAKQRAEESSKE----------- 809 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4444444333333222111111 1111110 224555555555555554442222
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 006469 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378 (644)
Q Consensus 299 ~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iL 378 (644)
+.-++.++..|.-|...|...+ ..+..+...+..++..+..++..+...+.+. ..|.+..-.+|...
T Consensus 810 -------~ek~~~e~e~l~lE~e~l~~e~----~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~--~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 810 -------LEKRENEYERLQLEHEELEKEI----SSLKQQLEQLEKQISSLKSELGNLEAKVDKV--EKDVKKAQAELKDQ 876 (1174)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHH
Confidence 1222333444444444444333 3334444555555666666667777776665 46677777777666
Q ss_pred HhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 379 QAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLE 457 (644)
Q Consensus 379 k~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE 457 (644)
+.. +- +.|. . +. .++..-.++..+..........+..++..++.+-.....++..+.+.+.-|.
T Consensus 877 k~k-~~--~~dt-~----------i~-~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 877 KAK-QR--DIDT-E----------IS-GLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHH-HH--hhhH-H----------Hh-hhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 654 11 1110 0 00 1222333344444444455555555555555555555555555444444444
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.63 E-value=1.3 Score=47.56 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCC
Q 006469 82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDP 118 (644)
Q Consensus 82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP 118 (644)
|+|-.||.=+--|.++=..+-..|=++=...+.-|-|
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPp 104 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPP 104 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 8999999999999999999999999988888776633
No 74
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.62 E-value=0.0005 Score=81.35 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 401 SKMESLLLDKNRKMEHELT-------QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt-------~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
..|+..|..|...+...-. ..+.-+..+..++.....++..+...+.+....|..||.++....
T Consensus 579 ~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 579 EELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445445555444433323 334444555555555556677777888888888888888887665
No 75
>PRK01156 chromosome segregation protein; Provisional
Probab=96.61 E-value=2.9 Score=51.15 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~ 543 (644)
+.-+..+++.++..+.+++.++.....++..++.++..
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~ 720 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRIND 720 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444445555555555555555444444444444433
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.58 E-value=2.2 Score=49.49 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 006469 217 AKDSVATMQKLHELAQSQLFEVRAQSDEER 246 (644)
Q Consensus 217 ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~ 246 (644)
-...+..++..|...+..|...+..|+...
T Consensus 138 nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~ 167 (569)
T PRK04778 138 NREEVEQLKDLYRELRKSLLANRFSFGPAL 167 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccchH
Confidence 344556666666666666666666666553
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.49 E-value=2.7 Score=49.51 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (644)
.++.++..+...+..+..++..+..++..++.++..
T Consensus 432 ~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 432 EAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555444
No 78
>PF13514 AAA_27: AAA domain
Probab=96.45 E-value=4.1 Score=51.11 Aligned_cols=194 Identities=18% Similarity=0.198 Sum_probs=90.9
Q ss_pred hhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhh---hHhhHhHHHHHHHHHHHHhH
Q 006469 79 LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSEL---ESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 79 ~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~l---e~e~~~Lk~el~~l~~e~a~ 155 (644)
.....+..-+..+..+..........+-.+...+. .|+| | ....+++.+.+.+ -.+....+.++..+....+.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-~p~~-p--~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1111)
T PF13514_consen 561 EARARLARAQARLAAAEAALAALEAAWAALWAAAG-LPLS-P--AEMRDWLARREAALEAAEELRAARAELEALRARRAA 636 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCC-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566677777777777788888888887 7765 4 5556665544311 11222222222222222222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 156 LKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235 (644)
Q Consensus 156 lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L 235 (644)
+. ..|...+..+.. ...+...+...+. +-+.+. ....+-..++.++..++..+..++..+...+..+
T Consensus 637 ~~------~~L~~~l~~~~~--~~~l~~~l~~a~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1111)
T PF13514_consen 637 AR------AALAAALAALGP--AEELAALLEEAEA-LLEEWE----QAAARREQLEEELQQLEQELEEAEAELQEAQEAL 703 (1111)
T ss_pred HH------HHHHHHHHhCCc--cccHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111111111 1111222211111 111111 1112223445555555555666666665566555
Q ss_pred HHhhhcchHH--------------HH---hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 006469 236 FEVRAQSDEE--------------RV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG 289 (644)
Q Consensus 236 ~~~~~k~~~~--------------~~---a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~ 289 (644)
..|......- .. ....++.-....+.....|+..+++....+..++...-....
T Consensus 704 ~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~ 774 (1111)
T PF13514_consen 704 EEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLG 774 (1111)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555443311 11 112344444455566667777777777777777776665543
No 79
>PRK11281 hypothetical protein; Provisional
Probab=96.43 E-value=4 Score=50.77 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=17.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHH
Q 006469 354 DMKKELQARPTSKMVDDLRKKVKILQ 379 (644)
Q Consensus 354 ~L~~~l~~~~~~sDYeeiKrEL~iLk 379 (644)
-|..+++++|+..-++.+-.++.-++
T Consensus 341 ~l~~q~~~LP~~~~~~~l~~~iAdlr 366 (1113)
T PRK11281 341 ILYQQQQALPSADLIEGLADRIADLR 366 (1113)
T ss_pred HHHHHHHhCCCCcccchHHHHHHHHH
Confidence 56677788887776666666666554
No 80
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.42 E-value=0.34 Score=45.14 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
.+..++..++..+..|+...+.+...| +....++..+-.++..++..+..|+.+|...|.-|..+|...
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l-------~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAEL-------EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555556666665555555444 444556778889999999999999999999999999999764
No 81
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.41 E-value=4 Score=50.64 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=47.4
Q ss_pred HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhH
Q 006469 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (644)
Q Consensus 81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~ 160 (644)
..+++.....|++.-...+.++...=..|+..-..|--.|....- ...++.+.+.++.++..+..++.++..++
T Consensus 690 ~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~------~~l~~~~i~e~~~~l~~~~~el~~~~~~~ 763 (1294)
T KOG0962|consen 690 VEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSI------IKLIDKEIPELEKELQEVYEELGDLSEEE 763 (1294)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHHHhhhhhHHHHHHHHHHHHHHhhhhhh
Confidence 455566666666666666666555555555522233233332211 12345667777788888888888888777
Q ss_pred HHHHHHHH
Q 006469 161 STIRRLEE 168 (644)
Q Consensus 161 ~~~~~Lke 168 (644)
++...+..
T Consensus 764 e~~~~~l~ 771 (1294)
T KOG0962|consen 764 EDDEKLLD 771 (1294)
T ss_pred hHHHHHhc
Confidence 76554443
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.39 E-value=1.7 Score=45.97 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC-CCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 262 RAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT-LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKK 340 (644)
Q Consensus 262 ra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~-~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~ 340 (644)
+-..|+..|+.++..|...|....++..++.... .....+....+ ...|..|.+++.+|...|..........+..
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~---~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~ 258 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERL---SSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ 258 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999998766533221110 00000111112 4459999999999999998877777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 006469 341 LNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVK 376 (644)
Q Consensus 341 L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~ 376 (644)
.-.....+..+...|+..|+.- ...-+.+.|.|.
T Consensus 259 ~~~eek~ireEN~rLqr~L~~E--~erreal~R~ls 292 (310)
T PF09755_consen 259 YLQEEKEIREENRRLQRKLQRE--VERREALCRHLS 292 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 6666677777777787777752 233444444443
No 83
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.36 E-value=2.8 Score=48.23 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 254 NLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333 (644)
Q Consensus 254 eml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~ 333 (644)
+|++.+.+..+.|+..+|+|++.|-.++-.. ..-|.-++..|+++|......
T Consensus 608 d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~T----------------------------TrPLlRQIE~lQ~tl~~~~ta 659 (961)
T KOG4673|consen 608 DMFRGEIEDLQRRLQAAERRCEELIQQVPET----------------------------TRPLLRQIEALQETLSKAATA 659 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------------------------ccHHHHHHHHHHHHHhhhhhH
Confidence 5667777777778888888888877665221 112334457788888877777
Q ss_pred HHHHHHHHHHHHH
Q 006469 334 HMNEIKKLNALLI 346 (644)
Q Consensus 334 ~~~~~~~L~~~l~ 346 (644)
+......|.+.|.
T Consensus 660 wereE~~l~~rL~ 672 (961)
T KOG4673|consen 660 WEREERSLNERLS 672 (961)
T ss_pred HHHHHHHHHHhhh
Confidence 7766655555554
No 84
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=3 Score=47.28 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=27.0
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 247 ~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
....-.|+++..+++.-...+..+..+|..|+.++..
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567777777777777777788888888887754
No 85
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.09 E-value=4.2 Score=47.63 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (644)
Q Consensus 406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (644)
-|..+|-.|..|+....-....++..++.++.-.+..-...++
T Consensus 274 qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseq 316 (1265)
T KOG0976|consen 274 QLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQ 316 (1265)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 3666777777777777776677777777776666555444433
No 86
>PRK10698 phage shock protein PspA; Provisional
Probab=95.99 E-value=1.5 Score=44.62 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=23.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469 109 YQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 109 Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~ 155 (644)
...|-.+-||.-.|...+. ++++.+.+++..+...-..-..
T Consensus 16 n~~ldkaEDP~k~l~q~i~------em~~~l~~~r~alA~~~A~~k~ 56 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQ------EMEDTLVEVRSTSARALAEKKQ 56 (222)
T ss_pred HHHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667899988777555 3455555555554443333333
No 87
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.98 E-value=2.1 Score=43.31 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=22.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469 110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~ 155 (644)
..+-.+-||.-.|...+. ++++.+.+.+..+...-..-..
T Consensus 17 ~~~dk~EDP~~~l~q~ir------em~~~l~~ar~~lA~~~a~~k~ 56 (219)
T TIGR02977 17 ALLDKAEDPEKMIRLIIQ------EMEDTLVEVRTTSARTIADKKE 56 (219)
T ss_pred HHHHhccCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445567799888776554 3444555555555544333333
No 88
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.92 E-value=5.7 Score=47.78 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=108.7
Q ss_pred HHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhc---CCcHHH------HHhhHHHHHH----hHHH
Q 006469 24 ISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKK---ASPEEK------LSLFNSLLKG----YQEE 90 (644)
Q Consensus 24 a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk---~~~~ek------l~~~~~LLK~----yQ~E 90 (644)
++-.|..+-++. ++|+.+-+.|.+.+.++-+-| .+|+-|-+--+ ++.+++ +.-+.+|+|- |-.=
T Consensus 50 ~llLg~avqcp~--kelfi~riq~ldlete~a~~~-~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~ 126 (1195)
T KOG4643|consen 50 QLLLGSAVQCPT--KELFIQRIQILDLETEMAQMR-TIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSV 126 (1195)
T ss_pred HHHHHhhhcCCc--HHHHHHHHHhhhhHHHHHHHH-HHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888874 789999999999999998888 77777654322 333333 3344556553 4455
Q ss_pred HHHHhhhhhhh-HH--HHHHHhhhhhcCCCC-----hHHHHH---HHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhh
Q 006469 91 VDNLTKRAKFG-EN--AFLNIYQKLYEAPDP-----YPALAS---IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQ 159 (644)
Q Consensus 91 ID~LTkRsK~a-E~--aFl~~Y~~L~eaPDP-----~PlLe~---s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q 159 (644)
||.+--.+-.. |. -..++-+.+.+.||- .|..-. .....+.+..++.-+..|+.++++=-.-+-.+
T Consensus 127 id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~l--- 203 (1195)
T KOG4643|consen 127 IDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRL--- 203 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66554332211 11 133455566666653 222111 00011111233333333333333211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHhhhHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006469 160 QSTIRRLEERNRQLEQQMEEKVKEIV--EIKQRGLAEENQKTLEI----LQEREQ---ALQDQLRQAKDSVATMQKLHEL 230 (644)
Q Consensus 160 ~~~~~~Lke~~~~le~~~e~~~~~~v--~~ke~el~~~~~ek~~~----~~erE~---~L~~ql~~ae~~l~~L~~~~e~ 230 (644)
..+++-++.++..+.+...+-+..+- ..--.++.+..+ +... +.++-. .+.++++++++.+.+|....+.
T Consensus 204 r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre-~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeM 282 (1195)
T KOG4643|consen 204 RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALRE-QAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEM 282 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 12333344444444444433332111 111112222111 1111 233322 2578899999999999999999
Q ss_pred HHHHHHHhhhcchH
Q 006469 231 AQSQLFEVRAQSDE 244 (644)
Q Consensus 231 ~Q~~L~~~~~k~~~ 244 (644)
...+|..++++.+.
T Consensus 283 LeeQLq~lrarse~ 296 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEG 296 (1195)
T ss_pred HHHHHHHHHhcccc
Confidence 99999988887643
No 89
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.88 E-value=6.4 Score=47.99 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=43.3
Q ss_pred cCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHH
Q 006469 30 DFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQE 89 (644)
Q Consensus 30 ~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~ 89 (644)
+.+|+..+..++..+.++...|+++..=-+-+.+.--.|-|+...+.+..|+.+=++|+.
T Consensus 1252 E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~ 1311 (1758)
T KOG0994|consen 1252 EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQ 1311 (1758)
T ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Confidence 456777777788888888888887665544445555555566666788888888888875
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.88 E-value=0.33 Score=52.22 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=68.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE 330 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~ 330 (644)
.+...|...++.++.-+-.+..+...|..++...+.............-..+..+|.....+|..+..++..++..+..
T Consensus 163 ~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~- 241 (325)
T PF08317_consen 163 EDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEE- 241 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344444445555555555555555555555554443321100000011123334444444444444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHhc
Q 006469 331 REQHMNEIKKLNALLIEKEAALEDMKKELQAR--PTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 331 r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~--~~~sDYeeiKrEL~iLk~I 381 (644)
+...+..+..+......++.+++..++.. .+..+...||.++..|+.+
T Consensus 242 ---l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 242 ---LEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 33345566666667777777777777644 4677999999999999976
No 91
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.77 E-value=1.4 Score=52.81 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
..++.-+...|..++.+...++.+...++..+....
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~ 271 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGG 271 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 367888889999999999999999999999987643
No 92
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.76 E-value=2.5 Score=42.47 Aligned_cols=184 Identities=19% Similarity=0.289 Sum_probs=89.1
Q ss_pred HhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 006469 140 RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEI-LQEREQALQDQLRQAK 218 (644)
Q Consensus 140 ~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~-~~erE~~L~~ql~~ae 218 (644)
..++.++...+.+...|+.++.....--.++..+=..++.++...+.+.+.... .....+.. ..++ ..+...|..++
T Consensus 12 ~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~-~~~~~i~~~~~er-dq~~~dL~s~E 89 (207)
T PF05010_consen 12 KKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKE-LSEAEIQKLLKER-DQAYADLNSLE 89 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH-hHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 334444443334444444433332222223333334444455555544443321 11222222 2222 34566788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCc
Q 006469 219 DSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDS 298 (644)
Q Consensus 219 ~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~ 298 (644)
....+|+..|+....-+.+++... +.+..-++....|+...+.|...|+.-.+.
T Consensus 90 ~sfsdl~~ryek~K~vi~~~k~NE-----------E~Lkk~~~ey~~~l~~~eqry~aLK~hAee--------------- 143 (207)
T PF05010_consen 90 KSFSDLHKRYEKQKEVIEGYKKNE-----------ETLKKCIEEYEERLKKEEQRYQALKAHAEE--------------- 143 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 888999999887766666665421 233344555556777777777777755332
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKK 357 (644)
Q Consensus 299 ~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~ 357 (644)
.|+.-....+...+...+++..|++.|.... -.+..|+.+|..+..++++|..
T Consensus 144 --kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e----~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 144 --KLEKANEEIAQVRSKHQAELLALQASLKKEE----MKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred --HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111123334445555666666664332 2234455555555444444433
No 93
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=5.7 Score=46.56 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhh
Q 006469 76 KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLY 113 (644)
Q Consensus 76 kl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~ 113 (644)
+......|+--||.+|+.++.+++.-..-|...|+.+.
T Consensus 312 ~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (698)
T KOG0978|consen 312 KSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLK 349 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888999999999999977888888777766
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.76 E-value=2.4 Score=42.22 Aligned_cols=179 Identities=18% Similarity=0.312 Sum_probs=110.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~ 328 (644)
..-.+.-+..++.-++.++.++..+|..|+.--..-....+ . .. ..++++ ...|.....|++.|...|.
T Consensus 10 r~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~-k---~e----~~e~~L---pqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 10 RLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQ-K---YE----DTEAEL---PQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HH----hhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777888888888887754222111110 0 00 111222 3336667777777776666
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHH
Q 006469 329 NEREQ---HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMES 405 (644)
Q Consensus 329 ~~r~~---~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~ 405 (644)
..... ....+.+.+.++......+..|+...... +-.+-+++-++|+.+... .++ .......|+.
T Consensus 79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk-nL~eReeL~~kL~~~~~~----l~~-------~~~ki~~Lek 146 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK-NLAEREELQRKLSQLEQK----LQE-------KEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHH----HHH-------HHHHHHHHHH
Confidence 55444 33334555555555556666666655532 235789999999999854 221 1123456777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ 450 (644)
Q Consensus 406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~ 450 (644)
-|---|+.+..++......+.++...+..++.++..+.+.+.+-.
T Consensus 147 ~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 147 QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777778888888888888888888888888888888877776543
No 95
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.70 E-value=0.0028 Score=75.11 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 503 ~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.+-++.+..+.+....++..|+.+.+...+++..++.+++.++.
T Consensus 480 ~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 480 EEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp --------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888888888888877776665
No 96
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=5.3 Score=45.03 Aligned_cols=61 Identities=13% Similarity=0.253 Sum_probs=49.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 404 E~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
--+.+.--.+|+.+|-........+..-+...+..+......+.++..-+..|-.++..+.
T Consensus 313 sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~ 373 (772)
T KOG0999|consen 313 SELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALR 373 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3346666778888888888888888888888888888888888888888888877776665
No 97
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.52 E-value=7.3 Score=46.09 Aligned_cols=31 Identities=29% Similarity=0.202 Sum_probs=20.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEG 437 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~ 437 (644)
|..|-+....++..++..+..+..++..++.
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEE 387 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777666666666666655
No 98
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.48 E-value=2.9 Score=41.24 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccc
Q 006469 310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAE 389 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~ 389 (644)
+.-=..|..++..|+.++...-+ ..++|...+..+......++..++ -|.-|+.||.-||..-... +
T Consensus 14 ~~~n~~L~~en~kL~~~ve~~ee----~na~L~~e~~~L~~q~~s~Qqal~------~aK~l~eEledLk~~~~~l-E-- 80 (193)
T PF14662_consen 14 QLNNQKLADENAKLQRSVETAEE----GNAQLAEEITDLRKQLKSLQQALQ------KAKALEEELEDLKTLAKSL-E-- 80 (193)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-H--
Confidence 33344566666666666543322 223344333444344444443333 4677777777777431100 0
Q ss_pred hhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 390 DWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 390 ~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
.. =.-|+..+|.++.+...|-..+..|+.+...+..+...+.....++-..+..|-..|-.+
T Consensus 81 --------E~----~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 81 --------EE----NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred --------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 00 012666777777777777777777777776666666666666666666555555555333
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.43 E-value=3.2 Score=41.38 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKD 275 (644)
Q Consensus 196 ~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene 275 (644)
+.+.+++|.++-+..+.+...+++++++....+-.++..+..+..-. .....+|.+-+..-|+.++.++...++++.
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~---~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLS---EDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554444444444332210 112346677778888888888888888888
Q ss_pred HHHHHHHhhhhh
Q 006469 276 LLRSQLQSANDE 287 (644)
Q Consensus 276 ~Lr~eL~~a~s~ 287 (644)
.|..++.-+.+.
T Consensus 143 ~Lek~leL~~k~ 154 (194)
T PF15619_consen 143 ELEKQLELENKS 154 (194)
T ss_pred HHHHHHHHHhhH
Confidence 888777665444
No 100
>PRK09039 hypothetical protein; Validated
Probab=95.23 E-value=2.6 Score=45.73 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=12.3
Q ss_pred hhHhhHhHHHHHHHHHHHHhH
Q 006469 135 LESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~ 155 (644)
|..++..+..++++++.+++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 445566666666666655555
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.22 E-value=3.8 Score=41.05 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=90.7
Q ss_pred HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhH
Q 006469 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (644)
Q Consensus 81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~ 160 (644)
-.|||+.-.+|..+-++....+..+..+-.--...-.|- ..++.++..|+..+..|......+++-.
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL-------------~~a~~e~~eL~k~L~~y~kdK~~L~~~k 92 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL-------------KKAEEEVEELRKQLKNYEKDKQSLQNLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888999888888877777665544322222221 1234566777777777777666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 161 STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240 (644)
Q Consensus 161 ~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~ 240 (644)
..+..++.++..|+-..+... .++...+.+...-+..-.....+-++-..-+.--+++++..|...++....+|.+.-.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~-qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLE-QRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666655543332 3343444444433333333333333334445556899999999999999999987755
Q ss_pred cch
Q 006469 241 QSD 243 (644)
Q Consensus 241 k~~ 243 (644)
..+
T Consensus 172 ~~n 174 (201)
T PF13851_consen 172 AAN 174 (201)
T ss_pred HcC
Confidence 433
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.05 E-value=9.2 Score=44.55 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 006469 214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS 293 (644)
Q Consensus 214 l~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~ 293 (644)
|..++..+..|+.-.+.+...+..+..+-+..+.-..+|+..+..-...-.......-.+...+|.++.
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k----------- 457 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIK----------- 457 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-----------
Confidence 444566666666666666666666655555444444455444443211111111112223333333332
Q ss_pred CCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 006469 294 DTLDSNSYLENSLSAKEKIISELNSELHNIETA 326 (644)
Q Consensus 294 ~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~ 326 (644)
.+..++..|+..+.+|..++..+-..
T Consensus 458 -------~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 458 -------EIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455666777777777777766544
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=9.7 Score=44.70 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhcCCCCCCCCCc-hhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 006469 254 NLLMDEVERAQTRLLSLQREKDLLR-------SQLQSANDEAGSRNSDTLDS-NSYLENSLSAKEKIISELNSELHNIET 325 (644)
Q Consensus 254 eml~~dLEra~~R~~~lE~ene~Lr-------~eL~~a~s~~~~~~~~~~~~-~s~le~el~~ke~~i~~L~~e~~~L~~ 325 (644)
++.+.+..--++|+.+++..+-.|- .+|-+..+.... .+. -+.|+..+..|+..+.++...+..|.
T Consensus 482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~-----~~~~~s~L~aa~~~ke~irq~ikdqldels- 555 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE-----TTQRKSELEAARRKKELIRQAIKDQLDELS- 555 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444555556666666666555443 333332222211 122 34566667777777777776665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-hHHHHH
Q 006469 326 ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSK-MVDDLR 372 (644)
Q Consensus 326 ~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~s-DYeeiK 372 (644)
.+.++.-+++.-+..++.++...+......++.. |. .|+-+|
T Consensus 556 ---kE~esk~~eidi~n~qlkelk~~~~~q~lake~~--yk~e~d~~k 598 (1118)
T KOG1029|consen 556 ---KETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL--YKNERDKLK 598 (1118)
T ss_pred ---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3445555666667777777666666555555543 22 566555
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.91 E-value=10 Score=44.24 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 426 SEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 426 ~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
...-.++..+...+..+..++..-..++.+|..+++.+.
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334455556666666677777777778888888877664
No 105
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.90 E-value=14 Score=45.98 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=12.3
Q ss_pred HHHHHHhcCCChhhHHHHHHHHH
Q 006469 354 DMKKELQARPTSKMVDDLRKKVK 376 (644)
Q Consensus 354 ~L~~~l~~~~~~sDYeeiKrEL~ 376 (644)
-|..+++++|+..-|..+-.++.
T Consensus 321 ~L~~Q~~~LP~~~~~~~l~~~IA 343 (1109)
T PRK10929 321 ALRAQVARLPEMPKPQQLDTEMA 343 (1109)
T ss_pred HHHHHHHhCCCCcccchhHHHHH
Confidence 45566666666554444444433
No 106
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.85 E-value=5.6 Score=47.23 Aligned_cols=151 Identities=19% Similarity=0.264 Sum_probs=106.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCc
Q 006469 307 SAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSI 386 (644)
Q Consensus 307 ~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~ 386 (644)
.+.+..|.++..+++.+.+.+..........+.+++.++....-+.++-+...+.. ..|-+.|+.|+.-|..---.
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~--~~e~eqLr~elaql~a~r~q-- 404 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN--REEQEQLRNELAQLLASRTQ-- 404 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHH--
Confidence 56677888999999888888887777776777888888888777777766666654 57888999998888743111
Q ss_pred ccchhhhhcchhhhchhHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 387 EAEDWEVATNDEEMSKMESLLLDKNR--KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 387 d~~~~~~a~~~~~~~~LE~lLl~kNr--kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.+. + .+.-...--..|...|| ++-..++.++..|.++-.++.+.+++++.....+.+....+..|..-|+.++
T Consensus 405 -~ek---a-~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 405 -LEK---A-QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQ 479 (980)
T ss_pred -HHH---H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 100 0 00000011222333343 6777888888888999999998888888888888888888888888887776
Q ss_pred cc
Q 006469 465 SS 466 (644)
Q Consensus 465 ~~ 466 (644)
..
T Consensus 480 ~~ 481 (980)
T KOG0980|consen 480 RA 481 (980)
T ss_pred HH
Confidence 53
No 107
>PRK09039 hypothetical protein; Validated
Probab=94.80 E-value=2.2 Score=46.36 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETA 326 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~ 326 (644)
+++.........++..+..|.++++.||.+|+....... ..+........+|..|...+....+.
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~-----------~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD-----------ASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455555555556666666555554432 23333445566677777777777654
No 108
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.71 E-value=4.7 Score=40.69 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLR 278 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr 278 (644)
+.-.+..+++...|+..+|.+.+...
T Consensus 160 ~~~a~~~~er~e~ki~~~ea~a~a~~ 185 (221)
T PF04012_consen 160 VSSAMDSFERMEEKIEEMEARAEASA 185 (221)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777765444
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.61 E-value=3.4 Score=42.39 Aligned_cols=118 Identities=24% Similarity=0.320 Sum_probs=62.2
Q ss_pred hhHhHHHHHHHHHHHHhHhhhhHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 138 ENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ 213 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~lk~q~~----~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~q 213 (644)
+...++..+..++.++.++++|.. +++.+.+++...+.++ ..+ ..+.++.+ +...+..|+++...|.++
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-----~~v-~~~~e~~a-L~~E~~~ak~r~~~le~e 111 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-----SAV-KDERELRA-LNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc-ccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554443 4444555555555544 111 12333333 445556788888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHH
Q 006469 214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVER 262 (644)
Q Consensus 214 l~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEr 262 (644)
|..+...++.+....+..+..+........+.......++..+..+...
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~ 160 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQE 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666666555555555444333344444444444444333
No 110
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.53 E-value=4 Score=38.68 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 260 VERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 260 LEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
+|..+.|+..||.+.+.....|..+
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKET 99 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444443
No 111
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.52 E-value=8.2 Score=45.35 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~ 282 (644)
++.+..+|-+-++.++..++.+.........+|+..+..++.+.+...-|++-.+..+...+-++++.|+||-.|.--
T Consensus 453 lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it-- 530 (861)
T PF15254_consen 453 LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT-- 530 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH--
Confidence 455566777777778888888887777777788888888888888888888888888888888999999988777633
Q ss_pred hhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 283 SANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE 330 (644)
Q Consensus 283 ~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~ 330 (644)
+.++|.+|.+|++=.+.|+.+...+
T Consensus 531 -----------------------lrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 531 -----------------------LRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999988888888776544
No 112
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.50 E-value=7.3 Score=43.41 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=15.7
Q ss_pred HhhHhhHHHHHHHHHHhHHhhcC
Q 006469 49 ENQENSQKNRRKLAESTRDFKKA 71 (644)
Q Consensus 49 ~~q~~s~~sRK~La~~Tk~Fkk~ 71 (644)
..|-+=+.||.-+..-.+++.--
T Consensus 70 ~tq~~il~S~~v~~~Vi~~l~l~ 92 (444)
T TIGR03017 70 ATQVDIINSDRVAKKVVDKLKLD 92 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44445578888887777777654
No 113
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.28 E-value=1.6 Score=40.57 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 215 ~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~---~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
..++..+..++..++.......+...+|+.+. +....+|..+..++...+..+..+..+.+..+..|......
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444433333445556676662 23356677777777777777777777777777776554443
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.18 E-value=14 Score=42.83 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMD------------EVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 216 ~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~------------dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
.-...+..|+..|...+..|.+.+..|+.........+.-+.. |-..|+.-+..++.....|...+..
T Consensus 133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~ 212 (560)
T PF06160_consen 133 KNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMED 212 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666766666666553333333322222 3334666666666666666666544
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.18 E-value=9.1 Score=40.65 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHh---hHHh--------HHHHHHHHHHHHHHHHHHHH
Q 006469 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVA---KQSE--------VNLLMDEVERAQTRLLSLQR 272 (644)
Q Consensus 204 ~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a---~~aE--------leml~~dLEra~~R~~~lE~ 272 (644)
.++-..|..+|..+...+..|+..+. ...+|...-...+++... .... ..--...++.-+.++..||.
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEe 174 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEE 174 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHH
Confidence 34444556666666666666665554 233444333322222110 0000 01112346677889999999
Q ss_pred HHHHHHHHHHhhhhhc
Q 006469 273 EKDLLRSQLQSANDEA 288 (644)
Q Consensus 273 ene~Lr~eL~~a~s~~ 288 (644)
+|..||.+.+......
T Consensus 175 EN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 175 ENEQLRSEASQLKTET 190 (306)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 9999999988776554
No 116
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.10 E-value=15 Score=42.74 Aligned_cols=51 Identities=8% Similarity=0.193 Sum_probs=24.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 410 kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
.-..+..++..+.....++...+..+.+.-..+...+...+..+..+..-+
T Consensus 384 ~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 384 ELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555555444444433333
No 117
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.07 E-value=5 Score=45.56 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=28.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
.....+.-+...+..++.++..++.+...|+.++..
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677778888888888888888888888887764
No 118
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=8.3 Score=45.50 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcc
Q 006469 317 NSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATN 396 (644)
Q Consensus 317 ~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~ 396 (644)
.+++.+...++..+.....-++..+.+...+...+.++|+.+++.. .+....+|+++.+|| ++||-+.+.-.
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~--~s~hsql~~q~~~Lk-~qLg~~~~~~~----- 723 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF--ISEHSQLKDQLDLLK-NQLGIISSKQR----- 723 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHhcccccchh-----
Confidence 3444455555555556666666777777777777788888888765 477889999999999 78885432110
Q ss_pred hhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 397 DEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQK 451 (644)
Q Consensus 397 ~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~ 451 (644)
.+-+ ..++++-...+|..++.+...+....+.+.+++..-.+.++.++.
T Consensus 724 -----~~~q-~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~ 772 (970)
T KOG0946|consen 724 -----DLLQ-GAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKA 772 (970)
T ss_pred -----hHHh-HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111 456778888888888888888887777777666555555444443
No 119
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.89 E-value=27 Score=44.97 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEV 527 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el 527 (644)
+...++..|..+++.-+.-+.|-|.+|
T Consensus 1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l 1109 (1353)
T TIGR02680 1083 TPAGLLARLEQEIAQRRELLTAREREL 1109 (1353)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 566788888888888888888877776
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.83 E-value=2.5 Score=45.23 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchh---hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469 255 LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNS---YLENSLSAKEKIISELNSELHNIETALSNER 331 (644)
Q Consensus 255 ml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s---~le~el~~ke~~i~~L~~e~~~L~~~l~~~r 331 (644)
.|+.+++.++.=+-.+..+...|+.++...+.....- +.|... .+..++.....+|.....++..++..+..
T Consensus 162 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~---~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~-- 236 (312)
T smart00787 162 LLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL---EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQE-- 236 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444444444444444555555555544444332110 011111 12223333333344444444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHhc
Q 006469 332 EQHMNEIKKLNALLIEKEAALEDMKKELQAR--PTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 332 ~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~--~~~sDYeeiKrEL~iLk~I 381 (644)
+...+.....+..+...++.+++..++.. -+..+...||..++.|+..
T Consensus 237 --l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 237 --LESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 33334555555666777778888877655 3456889999999999976
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.80 E-value=22 Score=43.72 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=25.4
Q ss_pred ChhHhhhHHHHHHhhhcCCchhhHHHhhh-hhhhcchhh
Q 006469 599 NPFAAFSKKERDQRYKELGIRDRITLSSG-RFLLGNKYN 636 (644)
Q Consensus 599 ~Pf~~F~~~E~~r~~~~l~~~er~~l~~~-r~vL~nr~~ 636 (644)
.+|.-+-+-+ -|.+..||-.|++.++++ |+-|+.-++
T Consensus 800 ~~~~~~~~~~-~r~~~~LSGGE~~~~sLalrLALs~~~~ 837 (908)
T COG0419 800 LVVVVYDGGE-VRPIKTLSGGERFLASLALRLALSDLLQ 837 (908)
T ss_pred eEEEEecCCC-ccccccCCchHHHHHHHHHHHHHHHHHh
Confidence 4565566666 677899999999998884 554444333
No 122
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.65 E-value=6.5 Score=37.12 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 006469 310 EKIISELNSEL 320 (644)
Q Consensus 310 e~~i~~L~~e~ 320 (644)
...|++|++-+
T Consensus 93 q~kv~eLE~~~ 103 (140)
T PF10473_consen 93 QEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHh
Confidence 33344444333
No 123
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.59 E-value=18 Score=42.17 Aligned_cols=273 Identities=20% Similarity=0.255 Sum_probs=139.6
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006469 134 ELESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQD 212 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ 212 (644)
+..+....|+..++.|+.++.......+ -...|+++..+++-.. .-. +....+|. -..+....++.
T Consensus 328 eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevER--v~s---ktLQ~ELs--------rAqea~~~lqq 394 (739)
T PF07111_consen 328 EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVER--VGS---KTLQAELS--------RAQEARRRLQQ 394 (739)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--Hhh---HHHHHHHH--------HHHHHHHHHHH
Confidence 3456677888888888888877543322 4455665555443322 000 00111121 11122223556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC--C
Q 006469 213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG--S 290 (644)
Q Consensus 213 ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~--~ 290 (644)
+...++..++-+.......|.-| .+..+.++-....|-.-..|+.-+-+++..++..++.-..-.. .
T Consensus 395 q~~~aee~Lk~v~eav~S~q~~L-----------~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrq 463 (739)
T PF07111_consen 395 QTASAEEQLKLVSEAVSSSQQWL-----------ESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQ 463 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 66666666666665555444321 1223445555555555666666666667788877664332111 0
Q ss_pred CCC-CCCCchhhhHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 006469 291 RNS-DTLDSNSYLENSLSAKEKIISELNSELHN----IETALSNEREQHMNE-------IKKLNALLIEKEAALEDMKKE 358 (644)
Q Consensus 291 ~~~-~~~~~~s~le~el~~ke~~i~~L~~e~~~----L~~~l~~~r~~~~~~-------~~~L~~~l~~~~~~~~~L~~~ 358 (644)
... +..-....+..+|.....+..+|.+++.. ++......++....+ ...|+..+......+..+...
T Consensus 464 e~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~Q 543 (739)
T PF07111_consen 464 EQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQ 543 (739)
T ss_pred ccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01112225656666665566666555442 222222333333332 345555555555555555555
Q ss_pred HhcC-----CChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006469 359 LQAR-----PTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLE 433 (644)
Q Consensus 359 l~~~-----~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~ 433 (644)
|... .+...-..+++||.--+.+ |+. + ......-+|+-|.++-..++..|...|..|....-.+.
T Consensus 544 L~~Ar~~lqes~eea~~lR~EL~~QQ~~-y~~--------a-lqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLR 613 (739)
T PF07111_consen 544 LEAARKSLQESTEEAAELRRELTQQQEV-YER--------A-LQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLR 613 (739)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 0111223444444444433 110 0 01233467888888889999999999988888877777
Q ss_pred HHHHHHH
Q 006469 434 TAEGKIA 440 (644)
Q Consensus 434 ~l~~~~~ 440 (644)
+++....
T Consensus 614 Q~qrqa~ 620 (739)
T PF07111_consen 614 QIQRQAA 620 (739)
T ss_pred HHHHHHH
Confidence 7765444
No 124
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.54 E-value=26 Score=43.77 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQ 454 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~ 454 (644)
+++.|++|..+|...-...+.+..+.......+..+.+.....++-++
T Consensus 263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 263 QFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888877777666666666666666655555554444443
No 125
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.51 E-value=12 Score=39.93 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhh
Q 006469 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWE 392 (644)
Q Consensus 313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~ 392 (644)
-..+..+|..|...+...-+.+.-....+...+..+.-++.-+.++++.. ..-+..-......++.+-+ .
T Consensus 130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~--~~~~~~e~~k~~~~~~~~l--~------ 199 (309)
T PF09728_consen 130 NIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQ--QEEAEQEKEKAKQEKEILL--E------ 199 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH--H------
Confidence 44577888888888877777766555555555555555555555555543 1122222222222322100 0
Q ss_pred hhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006469 393 VATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSK 467 (644)
Q Consensus 393 ~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~ 467 (644)
....+.. +......|..+|..+-....+.+..+.....-+.....++....+-+.+||.+-.......
T Consensus 200 ------~~~~~~~-~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 200 ------EAAQVQT-LKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKW 267 (309)
T ss_pred ------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001122 3334444444555554444555555444555555555667777777777777776665443
No 126
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.46 E-value=22 Score=42.57 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHH---hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 006469 221 VATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD 297 (644)
Q Consensus 221 l~~L~~~~e~~Q~~L~~~~~k~~~~~~---a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~ 297 (644)
++++....-+.+.+...++.+|.+-.. ....-..-+..-++.+.+-+.+++++|..|..+|..+....+-....
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K--- 488 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETK--- 488 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 344444444444444444444433321 11222334455566777777788999999999888877655310000
Q ss_pred chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 298 SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKEL 359 (644)
Q Consensus 298 ~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l 359 (644)
..+..-.+.+.+.+..-|..++..|+.++......+.++...|...+.++-.....+..++
T Consensus 489 -~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 489 -TESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0011112333344444455556666666666666666667777776666655555555554
No 127
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.42 E-value=5.4 Score=39.97 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006469 263 AQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 263 a~~R~~~lE~ene~Lr~eL~ 282 (644)
+.-+..-||+....|...|+
T Consensus 141 ~~~kn~lLEkKl~~l~~~lE 160 (201)
T PF13851_consen 141 TGLKNLLLEKKLQALSEQLE 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554443
No 128
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.41 E-value=8.8 Score=37.93 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL 281 (644)
.|-.-+..+.+..+.|..+|-..+..|..++
T Consensus 109 een~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 109 EENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 4444555556666667777777777777776
No 129
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.39 E-value=10 Score=38.66 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=24.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469 109 YQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 109 Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~ 155 (644)
-..+-.+-||.-.|+..+. +.+.+..+++..+...-.....
T Consensus 16 ~~~~dk~EDp~~~l~Q~ir------d~~~~l~~ar~~~A~~~a~~k~ 56 (225)
T COG1842 16 NELLDKAEDPEKMLEQAIR------DMESELAKARQALAQAIARQKQ 56 (225)
T ss_pred HHHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678899977766554 3455666666665554444333
No 130
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.06 E-value=14 Score=39.27 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=24.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAE 436 (644)
Q Consensus 403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~ 436 (644)
++. |..|-|.|+.++-.||.....+.+....++
T Consensus 162 le~-Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 162 LEA-LQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 455 889999999999999988877775444443
No 131
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=24 Score=41.90 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 405 SLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 405 ~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
.++..||-.++.+++....+..++.-.+....+.+..+...+..+..-++..|....
T Consensus 893 a~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~ 949 (970)
T KOG0946|consen 893 ALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKV 949 (970)
T ss_pred HHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhh
Confidence 445667777888888777777777776666666666665555555444444444443
No 132
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.79 E-value=11 Score=39.12 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=62.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccc
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE 486 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (644)
|-.++.+|.++|..-..+..-+++.+......+..+++++. ++..+|++.+.... ..+..+.. +.+
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelk-------r~KsELErsQ~~~~-----~~~~sl~~-~st- 144 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELK-------RCKSELERSQQAAS-----SGDVSLNP-CST- 144 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhc-----cCCccccc-cCC-
Confidence 55577789999999888888888887777776666655554 45555555553321 00100000 000
Q ss_pred cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 487 ~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|--.... |..-+| -.--.+..+|.+...+.-..-..|..|+..|+.
T Consensus 145 --pqk~f~~-----------p~tp~q-~~~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 145 --PQKSFAT-----------PLTPSQ-YYSDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred --chhhccC-----------CCChhh-hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 0000000 000011 111346677777777777777778888888886
No 133
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.78 E-value=6.1 Score=37.28 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
|+.+.+-+.+.-.+..++..++..+.....+..+.+..+..|..|+..|..+
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444
No 134
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.71 E-value=13 Score=38.11 Aligned_cols=179 Identities=15% Similarity=0.198 Sum_probs=90.4
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (644)
Q Consensus 301 ~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~ 380 (644)
.+...++.++.+..++.+.++-|.+...-....+.+.+ |. -.++.....|+.+|+.- ..-.++...+|..-+
T Consensus 133 ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l--lD---PAinl~F~rlK~ele~t--k~Klee~QnelsAwk- 204 (330)
T KOG2991|consen 133 ILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL--LD---PAINLFFLRLKGELEQT--KDKLEEAQNELSAWK- 204 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh--hC---hHHHHHHHHHHHHHHHH--HHHHHHHHhhhheee-
Confidence 34455677777788888877777655432111111110 11 11222233444444332 223444444444433
Q ss_pred cccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 381 VGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 381 IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
|-.+. .. -..|+.|-|-|..+...|-.+.. ++++..|..++.--...-++++.--..|-..+
T Consensus 205 --FTPdS----------~t----GK~LMAKCR~L~qENeElG~q~s--~Gria~Le~eLAmQKs~seElkssq~eL~dfm 266 (330)
T KOG2991|consen 205 --FTPDS----------KT----GKMLMAKCRTLQQENEELGHQAS--EGRIAELEIELAMQKSQSEELKSSQEELYDFM 266 (330)
T ss_pred --ecCCC----------cc----hHHHHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Confidence 54321 11 23489999999999988875543 34444444444433333333333333333333
Q ss_pred HhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 461 LKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVL 537 (644)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~l 537 (644)
..+..... +.++-+-|+..+...-|.+|.-|+..+..+.+-+...
T Consensus 267 ~eLdedVE--------------------------------gmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 267 EELDEDVE--------------------------------GMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HHHHHHHh--------------------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33322221 3344466777887777877777777776666555443
No 135
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.71 E-value=25 Score=41.14 Aligned_cols=101 Identities=19% Similarity=0.295 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD--EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 207 E~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~--~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
++.+.++...++...+.+.+..... .++.+.+.... ........|++-+......-=+++..+++.+.+++++++..
T Consensus 192 eke~~~~~~ql~~~~q~~~~~~~~l-~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~ 270 (716)
T KOG4593|consen 192 EKELDRQHKQLQEENQKIQELQASL-EERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544444444322 22333322211 11233344666555555555678888999999999998876
Q ss_pred hhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 285 NDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE 330 (644)
Q Consensus 285 ~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~ 330 (644)
+.... . +--|..|+.+|++.+...
T Consensus 271 re~~~------------t----------v~~LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 271 RENRE------------T----------VGLLQEELEGLQSKLGRL 294 (716)
T ss_pred HHhhh------------h----------hHHHHHHHHHHHHHHHHH
Confidence 65542 1 444666667776666543
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.56 E-value=22 Score=40.29 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006469 264 QTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 264 ~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
+-.+..+.++.+.|+.++....
T Consensus 274 hP~v~~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQKEEEG 295 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHhhc
Confidence 3455667777777777765543
No 137
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.43 E-value=4.9 Score=45.39 Aligned_cols=89 Identities=19% Similarity=0.325 Sum_probs=63.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~ 328 (644)
-...++-++.++..|..++.....+.+.|...|..+... ....+.++..+...+.+|+..|.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e------------------k~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE------------------KESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999988765332 33445567777777788887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469 329 NEREQHMNEIKKLNALLIEKEAALEDMKKELQAR 362 (644)
Q Consensus 329 ~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~ 362 (644)
..+...+.++.-+ .+++..|-.+|.++
T Consensus 480 TTr~NYE~QLs~M-------SEHLasmNeqL~~Q 506 (518)
T PF10212_consen 480 TTRRNYEEQLSMM-------SEHLASMNEQLAKQ 506 (518)
T ss_pred HHHhhHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 7777776665444 44555555555554
No 138
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.17 E-value=23 Score=39.51 Aligned_cols=127 Identities=8% Similarity=0.143 Sum_probs=56.9
Q ss_pred hHHHHH----HHhhhhhcCCCChHHHHHHHHHHH--hhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHH
Q 006469 101 GENAFL----NIYQKLYEAPDPYPALASIAEQDL--KLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLE 174 (644)
Q Consensus 101 aE~aFl----~~Y~~L~eaPDP~PlLe~s~~~~~--~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le 174 (644)
+|..|| .-|+...+..|-+..++.-+.... -...+-.++..|+.+++.+...+.+ ..++-+.+..++
T Consensus 229 Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~e-------a~k~s~~i~~l~ 301 (622)
T COG5185 229 VEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQE-------AMKISQKIKTLR 301 (622)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455554 456666655544443333221110 0112344455555555554444444 444444444444
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 175 QQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236 (644)
Q Consensus 175 ~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~ 236 (644)
.++...-..-++ -++. -..+.-|.+.|-.+-..|...++.-+.+|+.|++..+....++.
T Consensus 302 ek~r~l~~D~nk-~~~~-~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 302 EKWRALKSDSNK-YENY-VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHhhhHHH-HHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444222221110 0111 11223334455555556666666666666666666665554443
No 139
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.80 E-value=27 Score=39.64 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 006469 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK 554 (644)
Q Consensus 507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEk 554 (644)
.+..+-...+++..+..|.+...+-..+.+-+..+...+.|=...-++
T Consensus 314 el~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er 361 (772)
T KOG0999|consen 314 ELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRER 361 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHH
Confidence 344455556666666666666665555555555555555544433333
No 140
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.69 E-value=24 Score=38.70 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=10.7
Q ss_pred HHHHHHHhhcChhHh
Q 006469 589 KYKKMYEDDINPFAA 603 (644)
Q Consensus 589 ~Y~~~YE~~L~Pf~~ 603 (644)
.-+..|+-.|+||..
T Consensus 400 ~~~~~~~~~l~~~~~ 414 (423)
T TIGR01843 400 GERTVIEYLLKPITD 414 (423)
T ss_pred CCccHHHHHHHHHHH
Confidence 456778888888854
No 141
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.53 E-value=15 Score=36.20 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
..|+.+..=||--++|...|..-|.-||++|..++..+
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N 97 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN 97 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777788888888888999999987765
No 142
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.46 E-value=35 Score=40.26 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
.+..++..+...+..++..++..+..+.+++.......+....+ .+....++..++.+....+.++...-++.
T Consensus 220 ~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~-------r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 220 EQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE-------REQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444445555555555555555555544433333333333 33344455556666666666666555444
No 143
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.93 E-value=27 Score=37.98 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=20.8
Q ss_pred HHHHHhhhhcCChhHHHhhHhHHHHHHH
Q 006469 21 VSVISNFWKDFDLEKEKSLLDELGLKIA 48 (644)
Q Consensus 21 ~~~a~~~W~~~dl~~lq~~LD~~~~ei~ 48 (644)
-..+++-|-..-+..+.--+|++|.+.-
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~ 59 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEAD 59 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 3456778888888888888888877653
No 144
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.88 E-value=15 Score=34.83 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=25.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~D 459 (644)
+-.+.+.++.++..+...+..|+.++..++.++..+...+...+......+..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444455555555555555555555555444444444444444444443333
No 145
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.85 E-value=3.4 Score=41.07 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
.+|+..+.-.+..+..++..|+.+|..|-..+..
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666777888899999998877654
No 146
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.62 E-value=16 Score=37.75 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=17.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Q 006469 406 LLLDKNRKMEHELTQLKVKLSEKT 429 (644)
Q Consensus 406 lLl~kNrkL~~eLt~lR~~~~~l~ 429 (644)
..++||+.|+.+|..|+..+..+.
T Consensus 179 t~~EKnk~lq~QL~~L~~EL~~~k 202 (246)
T PF00769_consen 179 TYAEKNKRLQEQLKELKSELEQLK 202 (246)
T ss_dssp -HHHH-HHHHHHHHHHHHHHHTTB
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh
Confidence 367889999998888888776655
No 147
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.58 E-value=39 Score=40.41 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=17.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~ 282 (644)
...|++.+...+..-..++..+-++.+..+.+++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555444444443
No 148
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.42 E-value=2.7 Score=41.74 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
|..+.+.+..+|......++.+..++..++-++..++.++..++..|..|-..+...
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777777777777777777777777777776655543
No 149
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.29 E-value=19 Score=37.19 Aligned_cols=121 Identities=14% Similarity=0.277 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCccc
Q 006469 309 KEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEA 388 (644)
Q Consensus 309 ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~ 388 (644)
.+..+.++.++.......|... ...+..|..++.....+...|+.+. .+.++.+..|..-... .
T Consensus 10 le~rL~q~eee~~~a~~~L~e~----e~~a~~Leek~k~aeeea~~Le~k~------~eaee~~~rL~~~~~~----~-- 73 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEES----EETAEELEEKLKQAEEEAEELEQKR------QEAEEEKQRLEEEAEM----Q-- 73 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH----H--
Confidence 3455666666666666666332 2233445544444444445555542 3445555555443311 0
Q ss_pred chhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 389 EDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 389 ~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
..-...|..++..+...+..+......-..+...+..++...+....+--.-|..+-
T Consensus 74 -------------------~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~ 130 (246)
T PF00769_consen 74 -------------------EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVM 130 (246)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112444444444444444444444455555555555555554444444444443
No 150
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=90.14 E-value=3 Score=34.93 Aligned_cols=69 Identities=29% Similarity=0.395 Sum_probs=51.9
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 006469 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV 375 (644)
Q Consensus 301 ~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL 375 (644)
+++..+..|+.+|.+|..|-..|...- -.+.+.|.+|+..+......+..+...++.. -.+++.++..+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~e----l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~--e~~~~~l~~~l 70 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKE----LKLNNTIKKLRAKIKELEKQIKELKKKLEEL--EKELESLEERL 70 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 566678999999999999998876554 4566778888888888888888888777665 25555555544
No 151
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.13 E-value=29 Score=37.10 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=52.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
+|. +..+.++|+.+...++..+..-...+-.+-.+......++..+...+.+||+=.-.++
T Consensus 246 mek-m~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 246 MEK-MSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 6778899999999999999999999999999999999999999999999987655554
No 152
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.56 E-value=35 Score=37.18 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006469 214 LRQAKDSVATMQKLHELAQ 232 (644)
Q Consensus 214 l~~ae~~l~~L~~~~e~~Q 232 (644)
++....+|..+++.+++++
T Consensus 76 lddi~~qlr~~rtel~~a~ 94 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQ 94 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.50 E-value=33 Score=36.79 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (644)
Q Consensus 201 ~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~-~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~ 279 (644)
....++-..|...+..+..++.+++--.......+...+...... ......|-+.+...||+++.+...||+..-.+-.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666665555555555555544432211 1112278899999999999999999999988888
Q ss_pred HHHhhhhh
Q 006469 280 QLQSANDE 287 (644)
Q Consensus 280 eL~~a~s~ 287 (644)
+.+.+...
T Consensus 155 EkeEl~~E 162 (319)
T PF09789_consen 155 EKEELVTE 162 (319)
T ss_pred HHHHHHHH
Confidence 87765543
No 154
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.22 E-value=43 Score=37.70 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 255 LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQH 334 (644)
Q Consensus 255 ml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~ 334 (644)
.+..++..++.++..++.+...|+.++......... .+.. +.. .....+.....+...+..++......+...+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~-f~~~-~~~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQ-FPTD-DSF-GYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAA 170 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-CCCC-cch-hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 455667778888888888888888877654322110 0000 000 0111122222233344444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 335 MNEIKKLNALLIEKEAALEDMKKELQ 360 (644)
Q Consensus 335 ~~~~~~L~~~l~~~~~~~~~L~~~l~ 360 (644)
..++..+..++.....++..++..+.
T Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 171 EKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544
No 155
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.08 E-value=33 Score=36.21 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006469 516 FRARLRETEEEVRQLKEKIGVL 537 (644)
Q Consensus 516 fr~rn~ELE~el~~~~~~i~~l 537 (644)
+..||.+|-.+...+...+-..
T Consensus 276 lEErNKeL~ne~n~LkEr~~qy 297 (305)
T PF14915_consen 276 LEERNKELINECNHLKERLYQY 297 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 5667777766666665555443
No 156
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.07 E-value=36 Score=36.55 Aligned_cols=220 Identities=21% Similarity=0.243 Sum_probs=117.6
Q ss_pred HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHH
Q 006469 82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS 161 (644)
Q Consensus 82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~ 161 (644)
|+|-.||-=.--|.++=..+=..|-++=...+.-|.| ++.-=.. + .++.+. -++..|.-+|
T Consensus 63 P~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPp--LF~EY~~----a---~~d~r~------lm~~Qf~lvK---- 123 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPP--LFKEYFS----A---SPDVKL------LMDKQFQLVK---- 123 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHc----C---CHHHHH------HHHHHHHHHH----
Confidence 8899999999999988888777777777776644433 4321111 0 001110 0112222222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006469 162 TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ 241 (644)
Q Consensus 162 ~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k 241 (644)
++-||+.+--=++=.+ ..-..+...+++....++.=...|.+++..+..-+-.++..+...+.++..++..
T Consensus 124 ~~aRl~ak~~WYeWR~---------kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 124 TFARLEAKKMWYEWRM---------KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444322121111 1122334444444445555455566666666666777777777777777666655
Q ss_pred chHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHH
Q 006469 242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELH 321 (644)
Q Consensus 242 ~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~ 321 (644)
.++...--.+|+..+...|......+...-...+.++.++...... +.....+++++.++++
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~------------------I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK------------------IEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 4443333445555555555555555555555555555555443333 3334555777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 322 NIETALSNEREQHMNEIKKLNALLIE 347 (644)
Q Consensus 322 ~L~~~l~~~r~~~~~~~~~L~~~l~~ 347 (644)
.++..+..-+.-...++..|...+..
T Consensus 257 ~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 257 EAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77776655555556666666544443
No 157
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.84 E-value=68 Score=39.50 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcc
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQ---LKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~---~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy 561 (644)
+.-+..+.+.++.+..++...+.. ....+.....++..++..--+++..+..+...
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 748 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEEL 748 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666565555555 44455555666666666555555444444433
No 158
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=88.19 E-value=42 Score=36.35 Aligned_cols=58 Identities=33% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
+..+...++.++...+..+...+..+..++..+..+..+++.......+|+.++...+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555555555554443
No 159
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=87.83 E-value=35 Score=34.95 Aligned_cols=171 Identities=16% Similarity=0.233 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 006469 351 ALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTS 430 (644)
Q Consensus 351 ~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~ 430 (644)
....++..+...| .....++++|.-++.- ....... ...-+++. |-.+--...+.|..+...+.....
T Consensus 39 ~~~~~~~~i~~aP--~~~~~l~~~l~~l~~~--~~~~~~~-------~~~~s~~e-Leq~l~~~~~~L~~~q~~l~~~~~ 106 (240)
T PF12795_consen 39 RAAEYQKQIDQAP--KEIRELQKELEALKSQ--DAPSKEI-------LANLSLEE-LEQRLSQEQAQLQELQEQLQQENS 106 (240)
T ss_pred HHHHHHHHHHHhH--HHHHHHHHHHHhhhcc--ccccccC-------cccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677664 7888888888888754 1000000 01123333 444555677778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccc----cc-ccccCC-CCCCCcchh
Q 006469 431 LLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL----SE-KADKKH-TYPDQDQSS 504 (644)
Q Consensus 431 ~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~~~~~~~~s 504 (644)
.+..++.....+...+.+....+..++.+|........ .+++.+....+ .. ..-+.- -..-.+.+.
T Consensus 107 ~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~--------~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~ 178 (240)
T PF12795_consen 107 QLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGE--------SPLSEAQRWLLQAELAALEAQIEMLEQELLSNNN 178 (240)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 88888888888888888888888888888764321110 01110000000 00 000000 000125667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAEL 541 (644)
Q Consensus 505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~ 541 (644)
+..+.+.|||-+..++.-++..+..++..++.+|..-
T Consensus 179 rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~e 215 (240)
T PF12795_consen 179 RQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQE 215 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999888888888777643
No 160
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.55 E-value=53 Score=36.73 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~ 242 (644)
.|+.-+...++.|.+-+...+..|.+|...+..|
T Consensus 394 nLqe~la~tqk~LqEsr~eKetLqlelkK~k~ny 427 (527)
T PF15066_consen 394 NLQEALANTQKHLQESRNEKETLQLELKKIKANY 427 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhH
Confidence 3444455555555555555566665555554444
No 161
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.13 E-value=25 Score=34.46 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs 560 (644)
+.-+......+..+..++...+......+..++.++..++.+.-.|-+++..+++
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555566666677777777777777766666666666544
No 162
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.06 E-value=54 Score=36.29 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.++...|..+|.++...+.........+.....+....++++..|=..|.+++-
T Consensus 335 qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 335 QRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777666666667777777777777888888888877774
No 163
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.02 E-value=84 Score=38.48 Aligned_cols=212 Identities=16% Similarity=0.153 Sum_probs=109.6
Q ss_pred CCcHHHHHhhHHHHHHhHHHHHHHhh---hhhhhHHHHHHHhhhhhcC---CCChHHHHH---HHHHHHhhhhhhHhh--
Q 006469 71 ASPEEKLSLFNSLLKGYQEEVDNLTK---RAKFGENAFLNIYQKLYEA---PDPYPALAS---IAEQDLKLSELESEN-- 139 (644)
Q Consensus 71 ~~~~ekl~~~~~LLK~yQ~EID~LTk---RsK~aE~aFl~~Y~~L~ea---PDP~PlLe~---s~~~~~~~~~le~e~-- 139 (644)
+...-.-+.|..|+..|-=.||+|+. -=|-+|-|=|.=|+.|.|+ -||-.+|.. ..++......|+...
T Consensus 120 N~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~ 199 (1072)
T KOG0979|consen 120 NDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTT 199 (1072)
T ss_pred ccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677899999999999999973 3344454444444444432 223222222 222211111233222
Q ss_pred -----HhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHH---HHHHH---HHH
Q 006469 140 -----RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTL---EILQE---REQ 208 (644)
Q Consensus 140 -----~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~---~~~~e---rE~ 208 (644)
..|+.+++.|...+..++ +-.+.+.+++-+++++.-.. ......++.+..+.+- .++.. --.
T Consensus 200 ~~~~l~~L~~~~~~l~kdVE~~r----er~~~~~~Ie~l~~k~~~v~---y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~ 272 (1072)
T KOG0979|consen 200 KTEKLNRLEDEIDKLEKDVERVR----ERERKKSKIELLEKKKKWVE---YKKHDREYNAYKQAKDRAKKELRKLEKEIK 272 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccc---hHhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 223333333333333322 22223333333433321111 1112222222222211 11111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
-+......++....++.+.+...+..+.....+-.+- .--..+++++...++|....+....+++.+..+..|-.+.
T Consensus 273 pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 273 PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ 352 (1072)
T ss_pred hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666677777777777877777777665554322 1234578888899999988888888888888888888777
Q ss_pred hhcC
Q 006469 286 DEAG 289 (644)
Q Consensus 286 s~~~ 289 (644)
...+
T Consensus 353 ~el~ 356 (1072)
T KOG0979|consen 353 AELQ 356 (1072)
T ss_pred hhhh
Confidence 6544
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.88 E-value=4.6 Score=40.63 Aligned_cols=59 Identities=15% Similarity=0.324 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006469 262 RAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (644)
Q Consensus 262 ra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l 327 (644)
.+..|+..+|++++.|+.+|+........ ..+.+...+...+..|++|.++|..|...+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~-------~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQ-------RTAEMQQKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888888888888888876654321 112344444455555666666666555444
No 165
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=86.58 E-value=64 Score=36.67 Aligned_cols=198 Identities=16% Similarity=0.254 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236 (644)
Q Consensus 157 k~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~ 236 (644)
+++....+-++.++-+++..+-+.+...-.+ ...-...-+-...-++++...|...+..+.+.+++|-..+...+..+.
T Consensus 297 kaR~~k~~~e~sk~eeL~~~L~~~lea~q~a-gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld 375 (531)
T PF15450_consen 297 KARDAKEKLEESKAEELATKLQENLEAMQLA-GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLD 375 (531)
T ss_pred HHHHHHhHHHHhhHHHHHHHHHHHHHHHHHh-hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444444444555556666555555432211 111111111222334455556666666666666666666555554433
Q ss_pred HhhhcchHHHHhhHHhHH-H---HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhh
Q 006469 237 EVRAQSDEERVAKQSEVN-L---LMDEVER----AQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSA 308 (644)
Q Consensus 237 ~~~~k~~~~~~a~~aEle-m---l~~dLEr----a~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ 308 (644)
-.....+........|.+ . ...++.. +...+..+.-.++.|-.+|.........-.+ +.+-.+..+-.+
T Consensus 376 ~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks---d~d~kIdtE~k~ 452 (531)
T PF15450_consen 376 LQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKS---DSDTKIDTEGKA 452 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---hhhhhccHHHHH
Confidence 221111111111111211 1 1111111 2333344455555555555554433210000 011134445666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 309 KEKIISELNSELHNIETALSNEREQHMN-EIKKLNALLIEKEAALEDMKKELQ 360 (644)
Q Consensus 309 ke~~i~~L~~e~~~L~~~l~~~r~~~~~-~~~~L~~~l~~~~~~~~~L~~~l~ 360 (644)
.+..|..+..++..+-.++.-.+..... .++.++..+. ..++..|+.-++
T Consensus 453 R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~kle~siq 503 (531)
T PF15450_consen 453 REREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIMKLENSIQ 503 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHHHHHHHHH
Confidence 6778888888888877777666654333 4566665555 334444544444
No 166
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.30 E-value=42 Score=38.80 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=24.0
Q ss_pred HHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhh
Q 006469 62 AESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTK 96 (644)
Q Consensus 62 a~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTk 96 (644)
+-.+..|+ .+|+--+....+-+|+|+..--.|.+
T Consensus 330 ~~r~~~~~-~~ddH~RDALAAA~kAY~~yk~kl~~ 363 (652)
T COG2433 330 ALRTLKIS-VSDDHERDALAAAYKAYLAYKPKLEK 363 (652)
T ss_pred HHhhcCCC-CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44444554 46667788888999999988766654
No 167
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.16 E-value=51 Score=35.15 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLL 432 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l 432 (644)
+...-+.|.+++..||.++...+...
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677777777777776555444
No 168
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.83 E-value=35 Score=32.96 Aligned_cols=122 Identities=22% Similarity=0.334 Sum_probs=67.0
Q ss_pred HhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006469 137 SENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ-------MEEKVKEIVEIKQRGLAEENQKTLEILQEREQA 209 (644)
Q Consensus 137 ~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~-------~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~ 209 (644)
.|...++.++.+++.+++.+ ...+++|+.+.+..... +....+..+...-.+ ...++-+...+.++|..
T Consensus 27 ~E~~~l~~EL~evk~~v~~~---I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~-A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEV---IEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEE-AHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34555555555555555553 22444454444433333 322222222211111 11345556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 006469 210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQRE 273 (644)
Q Consensus 210 L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~e 273 (644)
|..+-..+++.++.|....+-+. .-..-..-=++.|..||......+..++.+
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE-----------~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAE-----------NLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888888777443 222222334567777777777777666654
No 169
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.83 E-value=59 Score=35.57 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 210 LQDQLRQAKDSVATMQKLHELAQSQL 235 (644)
Q Consensus 210 L~~ql~~ae~~l~~L~~~~e~~Q~~L 235 (644)
+..++..++.++..++..++..+.++
T Consensus 149 l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 149 ILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333333333
No 170
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.81 E-value=73 Score=36.61 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=19.2
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 006469 244 EERVAKQSEVNLLMDEVERAQTRLLSLQRE 273 (644)
Q Consensus 244 ~~~~a~~aEleml~~dLEra~~R~~~lE~e 273 (644)
.+.....-+|+++..++++..+.+-.++.+
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334455567777777777776666655553
No 171
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=85.62 E-value=78 Score=36.78 Aligned_cols=129 Identities=14% Similarity=0.220 Sum_probs=82.5
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccc
Q 006469 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSE 481 (644)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~ 481 (644)
.+=+.+.+.-+.+...|+.+..++.++...+..|.++-..+...+..++..+...-..+.+.+=
T Consensus 372 ~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL---------------- 435 (560)
T PF06160_consen 372 VPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL---------------- 435 (560)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------
Confidence 3345577778888888999999999998888888888888888888877777777766665431
Q ss_pred ccccc-cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469 482 AGGTE-LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (644)
Q Consensus 482 ~~~~~-~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki 555 (644)
+|+++ ..... ...+..+.-|..+.++.+.-+..+...+......+..|...+..+= ||..|-|++
T Consensus 436 PGlp~~y~~~~--------~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li-~~A~L~E~~ 501 (560)
T PF06160_consen 436 PGLPEDYLDYF--------FDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI-DNATLAEQL 501 (560)
T ss_pred CCCCHHHHHHH--------HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11110 00000 0233445555556666666666666666666666666666666654 356666654
No 172
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.60 E-value=29 Score=32.78 Aligned_cols=76 Identities=22% Similarity=0.343 Sum_probs=43.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006469 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (644)
Q Consensus 248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l 327 (644)
...++++-+..++++.+.+++.+++++..+......+... +......+.....++.++...+
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~------------------~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ------------------LKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666555554443332 2233344555666667666666
Q ss_pred HHHHHHHHHHHHHH
Q 006469 328 SNEREQHMNEIKKL 341 (644)
Q Consensus 328 ~~~r~~~~~~~~~L 341 (644)
...+..+..++.+-
T Consensus 125 ~~~~tq~~~e~rkk 138 (151)
T PF11559_consen 125 QQRKTQYEHELRKK 138 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555333
No 173
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.98 E-value=81 Score=36.58 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHH
Q 006469 367 MVDDLRKKVKILQ 379 (644)
Q Consensus 367 DYeeiKrEL~iLk 379 (644)
.|+.++.=+.|++
T Consensus 306 ~y~k~~~iv~i~q 318 (861)
T KOG1899|consen 306 NYDKNAQIVRILQ 318 (861)
T ss_pred hhhhhhhhhhhhc
Confidence 5777777777776
No 174
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.89 E-value=1.1e+02 Score=37.81 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=51.3
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.+|+. +.+++..++..+..++.++..+..+...+...+..+...++++......|+.+.....
T Consensus 395 ~~ld~-~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~ 457 (1141)
T KOG0018|consen 395 DTLDH-ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAE 457 (1141)
T ss_pred HHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Confidence 34555 7788888999999999998888888888888888888888888888888888776554
No 175
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.85 E-value=1e+02 Score=37.60 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=64.6
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 006469 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIET 325 (644)
Q Consensus 246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~ 325 (644)
......|++-+.+-+...+.+...++.+.+.++.++.+-..... .++..+......+.++.+++..+..
T Consensus 392 Dkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~-----------~l~~si~e~~~r~~~~~~~~~~~k~ 460 (1200)
T KOG0964|consen 392 DKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIK-----------ELESSINETKGRMEEFDAENTELKR 460 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhhhHHHHHHHHHHHHHH
Confidence 34455788777777777777777777777777777766544432 2333333334445555555555554
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469 326 ALSNE---REQHMNEIKKLNALLIEKEAALEDMKKELQAR 362 (644)
Q Consensus 326 ~l~~~---r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~ 362 (644)
.++.+ |..+-.+.++|+..+..+...+..-+..|...
T Consensus 461 ~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 461 ELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433 33355556777777777777777777766654
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.70 E-value=44 Score=38.59 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 160 QSTIRRLEERNRQLEQQM 177 (644)
Q Consensus 160 ~~~~~~Lke~~~~le~~~ 177 (644)
+..|...+.++...|.+.
T Consensus 351 ~kAY~~yk~kl~~vEr~~ 368 (652)
T COG2433 351 YKAYLAYKPKLEKVERKL 368 (652)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 335555555555555543
No 177
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=84.25 E-value=5.7 Score=33.83 Aligned_cols=51 Identities=18% Similarity=0.401 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccc
Q 006469 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564 (644)
Q Consensus 507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~ 564 (644)
..-...++++..++.+|..-|..+...+...+.|.++|++.| +|||.|-++
T Consensus 12 ~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-------~~Lq~YI~n 62 (80)
T PF10224_consen 12 KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-------EYLQQYIGN 62 (80)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 455677999999999999999999999999999999999977 566666543
No 178
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.21 E-value=61 Score=34.35 Aligned_cols=45 Identities=13% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006469 197 QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ 241 (644)
Q Consensus 197 ~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k 241 (644)
......|.++-.+|..++..+..++.+++...+..-.++..++.+
T Consensus 33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k 77 (294)
T COG1340 33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666665444444444443
No 179
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.91 E-value=59 Score=33.96 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 499 DQDQSSMLKVICNQRDRFRARLRETEEEVRQL 530 (644)
Q Consensus 499 ~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~ 530 (644)
.+..+.++..+..|=..+|.|+.|||-.|..+
T Consensus 273 ~s~~s~l~dQLK~qNQEL~ski~ELE~rLq~q 304 (307)
T PF10481_consen 273 NSSSSQLLDQLKAQNQELRSKINELELRLQGQ 304 (307)
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 34677788888888889999999998877654
No 180
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=83.71 E-value=30 Score=31.01 Aligned_cols=43 Identities=12% Similarity=0.398 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~ 543 (644)
+-..++|.|....+-...++..|+.++..+..++..++..+..
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888887777777776544
No 181
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.56 E-value=1.2e+02 Score=36.32 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 006469 512 QRDRFRARLRETEEEVRQLKEKIG-VLTAELEKTK 545 (644)
Q Consensus 512 QRDRfr~rn~ELE~el~~~~~~i~-~lr~E~~~Lk 545 (644)
+.|-|.....||.+.+..+.-... ..+++.+.++
T Consensus 564 eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~k 598 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLK 598 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443333 2334555555
No 182
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.50 E-value=1.2e+02 Score=36.30 Aligned_cols=99 Identities=21% Similarity=0.374 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 006469 267 LLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELH----------NIETALSNEREQHMN 336 (644)
Q Consensus 267 ~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~----------~L~~~l~~~r~~~~~ 336 (644)
...||-+++.||.|+.+++++..... ... | ...|-.|..|+. .|+.+|.-++..+..
T Consensus 431 ~~~Le~elekLk~eilKAk~s~~~~~------~~~----L---~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sK 497 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPS------ELA----L---NEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSK 497 (762)
T ss_pred CccHHHHHHHHHHHHHhcccccCCCC------ChH----H---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 56799999999999999963332211 112 2 223555555443 356666555533322
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhc
Q 006469 337 EI---KKLNALLIEKEAALEDMKKELQAR-PTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 337 ~~---~~L~~~l~~~~~~~~~L~~~l~~~-~~~sDYeeiKrEL~iLk~I 381 (644)
.. .-+.-.|. ..++.|+.+.++. +..-+|-+||..|++||..
T Consensus 498 a~~~~~~~~~~L~---eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~ 543 (762)
T PLN03229 498 ANSQDQLMHPVLM---EKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEF 543 (762)
T ss_pred cccccccccHHHH---HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 11 00111122 2355555555543 3335999999999999965
No 183
>PF13514 AAA_27: AAA domain
Probab=82.30 E-value=1.5e+02 Score=37.46 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
+.+....+....++..|+.++......+..++.++..|..
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555666666666666666666666666666666554
No 184
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.01 E-value=1e+02 Score=35.36 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 425 LSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 425 ~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
..+++.++..+...+-.....++.+-.....|--.|+++.
T Consensus 387 ~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 387 WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLE 426 (511)
T ss_pred cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence 3566677777776666666666666666555555555555
No 185
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.56 E-value=52 Score=37.22 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 006469 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNL-LMDEVERAQTRLLSLQREKDL 276 (644)
Q Consensus 198 ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aElem-l~~dLEra~~R~~~lE~ene~ 276 (644)
+....+.+++..++..+.+++.+..+.-..+..+|.+|..++....-......+-.-. .=.-+..|...+.-..+.|=+
T Consensus 261 ~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~q 340 (596)
T KOG4360|consen 261 EHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQ 340 (596)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhc
Confidence 3344566777778888888888877777777778888887776654332111111000 112234455566666777777
Q ss_pred HHHHH
Q 006469 277 LRSQL 281 (644)
Q Consensus 277 Lr~eL 281 (644)
|+++.
T Consensus 341 ldee~ 345 (596)
T KOG4360|consen 341 LDEEA 345 (596)
T ss_pred ccccc
Confidence 77664
No 186
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.44 E-value=67 Score=38.18 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 365 SKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESL-LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT 443 (644)
Q Consensus 365 ~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~l-Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~ 443 (644)
.++-..|+|.|+||-.- |-.. +.... ..+.....+|-+ |...|.-|+++|.+.....+.++...+.|-+-+....
T Consensus 393 rsENaqLrRrLrilnqq-lreq--e~~~k-~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQ-LREQ--EKAEK-TSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhHHHHHHHHHHHHH-HHHH--Hhhcc-cCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 45677788888887643 1100 00000 011112344332 7778888888888888888888777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 444 AKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 444 ~el~~~~~li~kLE~DL~ 461 (644)
.+-..+..++..-+..|.
T Consensus 469 ~Enk~~~~~~~ekd~~l~ 486 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELL 486 (861)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666555554444
No 187
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.39 E-value=69 Score=32.94 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=28.3
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHhhhhhcCCC
Q 006469 87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPD 117 (644)
Q Consensus 87 yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPD 117 (644)
-|.|||.+-|+-...=..|=.+|.++..+.-
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n 36 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATN 36 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 5899999999999999999999999997653
No 188
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=1.2e+02 Score=35.88 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (644)
Q Consensus 504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs 560 (644)
.-+.-..++..++.....+++.++.........+..|+..|+. |.+++.+
T Consensus 573 ~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~-------kle~~k~ 622 (698)
T KOG0978|consen 573 IELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR-------KLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcc
Confidence 3444556666677777777777777777777777777777777 7777543
No 189
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.92 E-value=51 Score=31.13 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 006469 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE 245 (644)
Q Consensus 203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~ 245 (644)
+..++..+..++..+...++..+..+..++..+...+++|..+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 92 AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666665555555555555444
No 190
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.72 E-value=73 Score=32.85 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHH
Q 006469 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEV 260 (644)
Q Consensus 196 ~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dL 260 (644)
+.|-+.--.+-|+.|..+|..++..++.|.+.+.....++.-.+.+.+....-..-.+..|..|+
T Consensus 36 l~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl 100 (333)
T KOG1853|consen 36 LNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL 100 (333)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667788888999999999999888777766666666665443322233334444444
No 191
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.70 E-value=1.4e+02 Score=36.07 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469 337 EIKKLNALLIEKEAALEDMKKELQARPTSKM 367 (644)
Q Consensus 337 ~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD 367 (644)
+++-.-..|.+....|..|-.+|.++.++.|
T Consensus 734 EiaaAA~KLAECQeTI~sLGkQLksLa~~~d 764 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIASLGKQLKSLATPED 764 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 3444445567777777888888877744433
No 192
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.56 E-value=1.4e+02 Score=35.91 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=11.9
Q ss_pred hhHhhHhHHHHHHHHHHHHhHhhhh
Q 006469 135 LESENRKMKIELEEYRTEATHLKNQ 159 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~lk~q 159 (644)
++.-+.-|+.+.+..-+++..+++.
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~ 587 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEE 587 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554443
No 193
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.99 E-value=1e+02 Score=34.06 Aligned_cols=93 Identities=17% Similarity=0.256 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCC----CCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 263 AQTRLLSLQREKDLLRSQLQSANDEAGSRN----SDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEI 338 (644)
Q Consensus 263 a~~R~~~lE~ene~Lr~eL~~a~s~~~~~~----~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~ 338 (644)
.=.|+..||.+..-|...|.+-.++-.... ...+.+... .+....|.-|..|+.+|..-+......+....
T Consensus 206 LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a-----~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~ 280 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEA-----AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKL 280 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888888888854444322111 111211111 11234588899999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006469 339 KKLNALLIEKEAALEDMKKELQ 360 (644)
Q Consensus 339 ~~L~~~l~~~~~~~~~L~~~l~ 360 (644)
.++.+.-.....+...++.+|.
T Consensus 281 ~qy~~Ee~~~reen~rlQrkL~ 302 (552)
T KOG2129|consen 281 MQYRAEEVDHREENERLQRKLI 302 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7776666666666666666654
No 194
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.13 E-value=20 Score=36.14 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 259 EVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 259 dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
.+..+++.+.+|+.+|.+|+.+|+.++..
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777776654443
No 195
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=79.00 E-value=1.1e+02 Score=33.68 Aligned_cols=62 Identities=10% Similarity=0.186 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH-HHHHH
Q 006469 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK-VKILQ 379 (644)
Q Consensus 308 ~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrE-L~iLk 379 (644)
..+.+|+++..++..-...+ ...++....|+.+..-++.++++|+.- |.+|-++... +.+++
T Consensus 235 qrd~~i~q~~q~iaar~e~I----~~re~~lq~lEt~q~~leqeva~le~y------yQ~y~~lr~q~~a~~r 297 (499)
T COG4372 235 QRDAQISQKAQQIAARAEQI----RERERQLQRLETAQARLEQEVAQLEAY------YQAYVRLRQQAAATQR 297 (499)
T ss_pred HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHH
Confidence 33445555555444322222 223334455666666666677777665 6678777654 34444
No 196
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.93 E-value=1.1e+02 Score=34.00 Aligned_cols=89 Identities=13% Similarity=0.300 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccccc
Q 006469 416 HELTQLKVKLSEKTSLLE----TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKA 491 (644)
Q Consensus 416 ~eLt~lR~~~~~l~~~l~----~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (644)
.+|+..+..+..-+.++. ....+...+...+.+.+++..+|+.++..
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~----------------------------- 221 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA----------------------------- 221 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 334444444444444444 33444555555566777777777777653
Q ss_pred ccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 492 DKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (644)
Q Consensus 492 ~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~ 543 (644)
...-+..+..+=.+++..+..++.+..+....-..-+..-..
T Consensus 222 ----------~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 222 ----------DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred ----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777888888888887777666655544444333
No 197
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.67 E-value=89 Score=32.60 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (644)
Q Consensus 408 l~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (644)
+-.|..+..++...|..+++++..+..|..++..+.....+
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35677788888888877777777766666666555555443
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.49 E-value=40 Score=36.18 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
......|+..+..+-+...+.+..+|.+.+.|..++..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666676667777777777777766666544
No 199
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=78.33 E-value=52 Score=29.76 Aligned_cols=44 Identities=14% Similarity=0.352 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~L 544 (644)
......+++....+....+...++.++.....++..++..+..+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566778888888888888888888888877777777766543
No 200
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.26 E-value=1.5e+02 Score=35.06 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~ 282 (644)
..++-..|+.+|+.++.++..-.. .+ .|-+......+. .+++--...+-+..-.|+..++..++.+..+|.
T Consensus 110 ~eekn~slqerLelaE~~l~qs~r-ae----~lpeveael~qr----~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQSLR-AE----TLPEVEAELAQR----NAALTKAEEHSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhHHh-hh----hhhhhHHHHHHH----HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777776654443 22 111222211111 122222222333334455555556666666665
Q ss_pred hhhh
Q 006469 283 SAND 286 (644)
Q Consensus 283 ~a~s 286 (644)
.++.
T Consensus 181 rarq 184 (916)
T KOG0249|consen 181 RARQ 184 (916)
T ss_pred HHHH
Confidence 5543
No 201
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=77.54 E-value=1e+02 Score=32.86 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240 (644)
Q Consensus 204 ~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~ 240 (644)
..+-..+.+.|..++.++.........+|..|.+...
T Consensus 133 t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~ 169 (301)
T PF06120_consen 133 TRKLAEATRELAVAQERLEQMQSKASETQATLNDLTE 169 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555565555555656655554433
No 202
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.39 E-value=1.6e+02 Score=34.88 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=26.8
Q ss_pred CchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006469 297 DSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (644)
Q Consensus 297 ~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~ 329 (644)
+.+..|+.+|..++..+.+++.-|..|+..|+.
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqerLel 123 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQERLEL 123 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHHHHH
Confidence 355689999999999999998888888877743
No 203
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.06 E-value=46 Score=34.84 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=21.1
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 006469 246 RVAKQSEVNLLMDEVERAQTRLLSLQR 272 (644)
Q Consensus 246 ~~a~~aEleml~~dLEra~~R~~~lE~ 272 (644)
.++..+-++--..||||++.|+..|+.
T Consensus 192 e~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 192 EANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677888999999999998875
No 204
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.94 E-value=70 Score=32.81 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469 306 LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (644)
Q Consensus 306 l~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~ 380 (644)
|.....++..|..|...+...|.. ....+..|+..+.....+....+.....+ +.+|.-+|.++..++.
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrq----I~~DIn~lE~iIkqa~~er~~~~~~i~r~--~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQ----INQDINTLENIIKQAESERNKRQEKIQRL--YEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 334455555555555555544422 22223334444444444444444444444 5789999999998873
No 205
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.72 E-value=66 Score=33.70 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 213 QLRQAKDSVATMQKLHELAQSQLFEV 238 (644)
Q Consensus 213 ql~~ae~~l~~L~~~~e~~Q~~L~~~ 238 (644)
-|.+|.+.|+-|+--.|....-|.+.
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 45778888888888888888777765
No 206
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.47 E-value=2.4e+02 Score=36.49 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
..+++-...+++.++.++..++.+.+.|+.++..++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~ 327 (1353)
T TIGR02680 289 RDELETAREEERELDARTEALEREADALRTRLEALQGSP 327 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 455666677777778888888888888888888776553
No 207
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=76.45 E-value=1.4e+02 Score=33.57 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL 281 (644)
-.++-|+.|+.+|...+..++.....++-..
T Consensus 246 ~qle~v~kdi~~a~~~L~~m~~~i~~~kp~W 276 (424)
T PF03915_consen 246 KQLETVAKDISRASKELKKMKEYIKTEKPIW 276 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 4456666666666666666665555544333
No 208
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=76.25 E-value=1.4e+02 Score=33.59 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=54.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~ 328 (644)
..+-+.-...++++|..|+..+....-.+|.+ .+. .|. +......-..|+.|+.++..++..|.
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~-------~gv-----lDP----~~~a~~~~~lI~~Le~qLa~~~aeL~ 303 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHI-------QKD-----IDP----KETITAIYQLIAGFETQLAEAKAEYA 303 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----cCh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777666665555533 211 111 01112223347788888888887777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 329 NEREQ---HMNEIKKLNALLIEKEAALEDMKKELQ 360 (644)
Q Consensus 329 ~~r~~---~~~~~~~L~~~l~~~~~~~~~L~~~l~ 360 (644)
.++.. -.-++..|+.++..+..+++..+.++.
T Consensus 304 ~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 304 QLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 66553 123356666666666666666666654
No 209
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=76.13 E-value=44 Score=36.32 Aligned_cols=52 Identities=27% Similarity=0.331 Sum_probs=28.4
Q ss_pred hhhcCCCChHHHHHHHHHHH-hhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHH
Q 006469 111 KLYEAPDPYPALASIAEQDL-KLSELESENRKMKIELEEYRTEATHLKNQQST 162 (644)
Q Consensus 111 ~L~eaPDP~PlLe~s~~~~~-~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~ 162 (644)
.|..+|+|.+++...++... .+..+...+..|..+++.|+.++.++..|+..
T Consensus 117 ~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~ 169 (342)
T PF06632_consen 117 KLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEK 169 (342)
T ss_dssp E-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899876654444432 22344556666666666666666665555443
No 210
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.37 E-value=54 Score=35.18 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 006469 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNV 549 (644)
Q Consensus 511 ~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~ 549 (644)
..+--|.....+..++......++......++.|++-||
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344455566666677777777777777777778887543
No 211
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.28 E-value=85 Score=30.65 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=4.5
Q ss_pred hhhhHHHHHHH
Q 006469 412 RKMEHELTQLK 422 (644)
Q Consensus 412 rkL~~eLt~lR 422 (644)
+.+..++..++
T Consensus 140 ~~~~~e~~~l~ 150 (191)
T PF04156_consen 140 KELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 212
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=74.73 E-value=80 Score=30.06 Aligned_cols=46 Identities=9% Similarity=0.271 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
....-+.++.++.+-+......+...+..+.+.+..+.+++..+..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888888888888888888877776655
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.73 E-value=1.5e+02 Score=33.21 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006469 309 KEKIISELNSELHNIET 325 (644)
Q Consensus 309 ke~~i~~L~~e~~~L~~ 325 (644)
++.+|..|++++..|-.
T Consensus 433 ~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 433 KDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHhHhe
Confidence 34445555444444433
No 214
>PRK14011 prefoldin subunit alpha; Provisional
Probab=74.72 E-value=65 Score=30.61 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
+-.-+..=.+.|+.|+.+|+.........+..+..++..++.
T Consensus 82 VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~ 123 (144)
T PRK14011 82 LEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRK 123 (144)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456667899999999999999999999999999999886
No 215
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.71 E-value=61 Score=28.71 Aligned_cols=45 Identities=13% Similarity=0.317 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk 545 (644)
+...+.|.|..+.+....++..++.++.....++..++.++..++
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778888877777777777777777777777777777666554
No 216
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.27 E-value=59 Score=28.30 Aligned_cols=41 Identities=15% Similarity=0.396 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAEL 541 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~ 541 (644)
+...+++.+....+.+...+..|+..+......+..++..+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888777777776666544
No 217
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=73.78 E-value=81 Score=34.21 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC------CChhhHHHHHHHHHHHH
Q 006469 310 EKIISELNSELHNIETALSNEREQHMN---EIKKLNALLIEKEAALEDMKKELQAR------PTSKMVDDLRKKVKILQ 379 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r~~~~~---~~~~L~~~l~~~~~~~~~L~~~l~~~------~~~sDYeeiKrEL~iLk 379 (644)
...+++|+.+...++..+...+..... .+..++.++..+...+.....++... ....+|+++++++++-+
T Consensus 213 ~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~ 291 (362)
T TIGR01010 213 LSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQ 291 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777665543222 23444444444444444433333221 00235555555555544
No 218
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.78 E-value=65 Score=35.30 Aligned_cols=65 Identities=9% Similarity=0.238 Sum_probs=42.7
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
..||. +-.|.+-+.+++..+..+......++..++.....+..-+.+......++-..|+.+...
T Consensus 252 ~~lek-I~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 252 KTLEK-IESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 666777777777777766666777777777777777766666666666666666665543
No 219
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.34 E-value=58 Score=31.42 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=50.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~ 329 (644)
.+|+..+..++...+..+..+..++-.|+.+|....+..... . + ...|.+|..++..|...|..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~---------e----l---~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE---------E----L---REEIEELEEEIEELEEKLEK 134 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---------H----H---HHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888888999999999999998887765211 2 2 44588888888888888877
Q ss_pred HHHH
Q 006469 330 EREQ 333 (644)
Q Consensus 330 ~r~~ 333 (644)
++..
T Consensus 135 l~~~ 138 (169)
T PF07106_consen 135 LRSG 138 (169)
T ss_pred HHhC
Confidence 6653
No 220
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=72.02 E-value=17 Score=29.14 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 006469 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (644)
Q Consensus 511 ~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYE 553 (644)
.=|.|.+..+.+|+..+..+......|+.++..|+..+-.|..
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4478888888999999999888888888888888886555543
No 221
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=71.83 E-value=46 Score=29.43 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC--CC-C-----CCchhhhHhhhhhhHHHHHHHHHHHHHH
Q 006469 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRN--SD-T-----LDSNSYLENSLSAKEKIISELNSELHNI 323 (644)
Q Consensus 252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~--~~-~-----~~~~s~le~el~~ke~~i~~L~~e~~~L 323 (644)
.+..+..+.+--...+.+++.+|+.|..+|++-++..+... .. . ......+..+|...+.+|+.|...+..|
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eL 88 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMEL 88 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555666666667889999999999999999988654221 11 0 1112245555655555666665555444
Q ss_pred H
Q 006469 324 E 324 (644)
Q Consensus 324 ~ 324 (644)
+
T Consensus 89 q 89 (96)
T PF11365_consen 89 Q 89 (96)
T ss_pred h
Confidence 3
No 222
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.07 E-value=1.4e+02 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=13.6
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHHhc
Q 006469 355 MKKELQARPTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 355 L~~~l~~~~~~sDYeeiKrEL~iLk~I 381 (644)
|..-+.+ ..+-++=..+..+..|
T Consensus 120 idvil~S----kSfsD~IsRvtAi~~i 142 (265)
T COG3883 120 IDVILNS----KSFSDLISRVTAISVI 142 (265)
T ss_pred HHHHHcc----CcHHHHHHHHHHHHHH
Confidence 4444444 3556666677777766
No 223
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.96 E-value=49 Score=31.90 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 306 LSAKEKIISELNSELHNIETALSNEREQHM 335 (644)
Q Consensus 306 l~~ke~~i~~L~~e~~~L~~~l~~~r~~~~ 335 (644)
+...+.+|.+|..++..|......++..+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666655444443
No 224
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.53 E-value=78 Score=32.45 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540 (644)
Q Consensus 505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E 540 (644)
++.-..+.|++.+..+..+.+++..+...|+.++.+
T Consensus 68 iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 68 IIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444457788888888888889999998888888887
No 225
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.39 E-value=89 Score=28.75 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQ 449 (644)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~ 449 (644)
.++. |-..-|+++.|++.++.++..+...-+.+..++..+..+..+.
T Consensus 17 ~ve~-L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 17 LVER-LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 5666667777777777766666666666666666665554333
No 226
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.15 E-value=30 Score=28.63 Aligned_cols=44 Identities=30% Similarity=0.325 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (644)
Q Consensus 502 ~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk 545 (644)
....+..|..-||+|-.++...=.++.++..++..|+.|++.++
T Consensus 24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888998888877776666666666666666655443
No 227
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=70.12 E-value=1.9e+02 Score=33.31 Aligned_cols=59 Identities=31% Similarity=0.446 Sum_probs=40.8
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhh-hhhHhhHhHHHHHHHHHHHHhHhh
Q 006469 87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLS-ELESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 87 yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~-~le~e~~~Lk~el~~l~~e~a~lk 157 (644)
-|+|||.+-|.-...=-.|=++|.++.++--| .+-.+++ +|..|++||+ +|++.+-.|.
T Consensus 6 Lq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~--------sqkeK~e~DLKkEIKKLQ----RlRdQIKtW~ 65 (575)
T KOG2150|consen 6 LQQEIDRCLKKVDEGVEIFDEIYEKLHSANNV--------SQKEKLESDLKKEIKKLQ----RLRDQIKTWQ 65 (575)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Confidence 48999999999999999999999999987622 2222221 4555555554 5555565554
No 228
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=69.98 E-value=2.2e+02 Score=33.20 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 006469 162 TIRRLEERNRQLEQQM 177 (644)
Q Consensus 162 ~~~~Lke~~~~le~~~ 177 (644)
.+..+.+|+..|+-..
T Consensus 105 ~~~~yQerLaRLe~dk 120 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDK 120 (861)
T ss_pred cchHHHHHHHHHhcch
Confidence 4555677777776544
No 229
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.94 E-value=1.8e+02 Score=32.22 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=25.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~e 280 (644)
...++..|.+|++.+..-...+-.+.++.+-+
T Consensus 340 ~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 340 QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999988888888888877777654
No 230
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=69.56 E-value=82 Score=28.64 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..-.+-|..|+..|+..+......+..++.++..+..
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666665555544
No 231
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.22 E-value=39 Score=29.67 Aligned_cols=47 Identities=36% Similarity=0.432 Sum_probs=31.6
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhH
Q 006469 134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKV 181 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~ 181 (644)
.+..++..|+.++..|+..+.++......-=.+++ +..||+.++..+
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e-L~~LE~~Le~aL 62 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE-LQQLEQQLESAL 62 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHH-HHHHHHhhhhhH
Confidence 45668889999999999988888765542222332 556777775544
No 232
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=69.15 E-value=1.8e+02 Score=31.88 Aligned_cols=141 Identities=20% Similarity=0.153 Sum_probs=72.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 006469 302 LENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 302 le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~I 381 (644)
+..+|.....+.++.==||.+|-..++..+-.+. ++. +...++..+..+|-..|. .|+.-|+.+
T Consensus 426 vqRELeVLSEQYSQKCLEnahLaqalEaerqaLR-qCQ---rEnQELnaHNQELnnRLa------------aEItrLRtl 489 (593)
T KOG4807|consen 426 VQRELEVLSEQYSQKCLENAHLAQALEAERQALR-QCQ---RENQELNAHNQELNNRLA------------AEITRLRTL 489 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HhhHHHHHHHHHHhhHHH------------HHHHHHHHH
Confidence 3445556666677777777777777765554332 221 112233333444444333 234444432
Q ss_pred ccCCcccchhhh-hcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 006469 382 GYNSIEAEDWEV-ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK----INEQQKLIQKL 456 (644)
Q Consensus 382 Ef~~~d~~~~~~-a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e----l~~~~~li~kL 456 (644)
-++|..+.+. -..+...--||.||.=| +++|.=|+..++.|..++.....+..-...+ +.++.--..+-
T Consensus 490 --ltgdGgGtGsplaqgkdayELEVLLRVK----EsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKaka 563 (593)
T KOG4807|consen 490 --LTGDGGGTGSPLAQGKDAYELEVLLRVK----ESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKA 563 (593)
T ss_pred --hccCCCCCCCccccCcchhhHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhh
Confidence 2222111100 00112334588887554 5777788888888888888777665544444 22333334455
Q ss_pred HHHHHhhc
Q 006469 457 EDDILKGY 464 (644)
Q Consensus 457 E~DL~~~~ 464 (644)
+.||..+.
T Consensus 564 dcdIsrLK 571 (593)
T KOG4807|consen 564 DCDISRLK 571 (593)
T ss_pred hccHHHHH
Confidence 55555554
No 233
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=69.13 E-value=2.1e+02 Score=32.59 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE 332 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~ 332 (644)
+.++...|.-+|..+..+..+.+.+..+++.-.... +.|.+.+..+.++|..+.-|+..+-.-|...++
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~-----------skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN-----------SKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD 268 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888899999999999888888888876654443 478888998899999998888887777766555
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006469 333 QH---MNEIKKLNALLIEKEAALEDMKKELQA 361 (644)
Q Consensus 333 ~~---~~~~~~L~~~l~~~~~~~~~L~~~l~~ 361 (644)
.. ..+...++.+..+......+-+.+|+.
T Consensus 269 a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 269 AQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 222333444334433333444444433
No 234
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.50 E-value=42 Score=27.71 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 257 MDEVERAQTRLLSLQREKDLLRSQL 281 (644)
Q Consensus 257 ~~dLEra~~R~~~lE~ene~Lr~eL 281 (644)
+.+.-.|+.-...|+++|++|+.+-
T Consensus 38 ~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 38 SQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777888888888764
No 235
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=67.79 E-value=1.7e+02 Score=31.06 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHH
Q 006469 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERA 263 (644)
Q Consensus 192 l~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra 263 (644)
++.++-...+....||+.|..+|..+-.+.+.+...+. +++.+|.+. .....++++-||.|+|..
T Consensus 253 lh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~ls-------e~~e~y~q~~~gv~~rT~~L~eVm~e~E~~ 320 (384)
T KOG0972|consen 253 LHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLS-------ELREKYKQASVGVSSRTETLDEVMDEIEQL 320 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44455555677889999999999888777777655444 444555544 445567777788776543
No 236
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.76 E-value=2.4e+02 Score=32.72 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhc
Q 006469 369 DDLRKKVKILQAV 381 (644)
Q Consensus 369 eeiKrEL~iLk~I 381 (644)
.-+..||..|+.+
T Consensus 430 ~p~~~el~~l~~~ 442 (582)
T PF09731_consen 430 RPFEDELRALKEL 442 (582)
T ss_pred CCHHHHHHHHHHh
Confidence 5678889999987
No 237
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.63 E-value=2.6e+02 Score=33.06 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=19.8
Q ss_pred HHHHHHHhhcChhHhhhHHHHHHh
Q 006469 589 KYKKMYEDDINPFAAFSKKERDQR 612 (644)
Q Consensus 589 ~Y~~~YE~~L~Pf~~F~~~E~~r~ 612 (644)
.|-+.+|+.=..+.-++++|.+..
T Consensus 715 qYDkiVEEkDaEL~~~k~KE~E~~ 738 (786)
T PF05483_consen 715 QYDKIVEEKDAELGLYKKKEQEQS 738 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888899887765
No 238
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.97 E-value=2.3e+02 Score=32.19 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (644)
Q Consensus 208 ~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s 286 (644)
.+|..++.-....++.-+..+......+.++. ++.....++ +++++.|..+|++|.-++=-.++-.+.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~K----------I~~~k~r~~~Ls~RiLRv~ikqeilr~ 404 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAK----------IEEAKNRHVELSHRILRVMIKQEILRK 404 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777777777777 555444444 556777888888886665555544443
No 239
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.15 E-value=76 Score=28.55 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLL 277 (644)
Q Consensus 198 ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~L 277 (644)
+....+.....+++.+|..++..|...+.+.+....+=.+++.. +..|+...+..++|+.+|++.+..+
T Consensus 2 ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~-----------l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 2 EEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNA-----------LQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 006469 278 RSQLQS 283 (644)
Q Consensus 278 r~eL~~ 283 (644)
+..|..
T Consensus 71 ~~~le~ 76 (107)
T PF09304_consen 71 RRNLED 76 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 240
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=65.89 E-value=1.1e+02 Score=28.31 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccc-cccccc-
Q 006469 415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE-LSEKAD- 492 (644)
Q Consensus 415 ~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 492 (644)
..+|..+..++..+...++.++..+..+...+.+....+..|+ .+..... +..+..+.... .+++.-
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~----~l~~~~~-------~~e~lvplg~~~yv~~~v~ 73 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE----ELKSKGE-------GKETLVPIGAGSFVKAKVK 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcccCC-------CCeEEEEcCCCcEEEEEec
Confidence 4556666777777777777777777777777777766665554 2221100 11111110000 000000
Q ss_pred --------cCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 493 --------KKHT-YPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 493 --------~~~~-~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.|++ -..-....-++++....+.....+..+..++......+..+...+..+..
T Consensus 74 ~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 74 DKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred CCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00125556677777777777777777777777777777766666665543
No 241
>smart00338 BRLZ basic region leucin zipper.
Probab=65.28 E-value=22 Score=28.64 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYE 553 (644)
+.=|+|-+..+.+||.++..+......|+.++..|+..|..|-.
T Consensus 18 ~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 18 RRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778889999999999999999999999999996655543
No 242
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=65.21 E-value=96 Score=27.42 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006469 426 SEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSK 467 (644)
Q Consensus 426 ~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~ 467 (644)
.+|...++=.+.+..-+...+.++...|..|...|.++....
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666677777888888889999999999887644
No 243
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=65.14 E-value=2.1 Score=48.41 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 306 LSAKEKIISELNSELHNIETALSNERE 332 (644)
Q Consensus 306 l~~ke~~i~~L~~e~~~L~~~l~~~r~ 332 (644)
+.+.++.|.-|..-|.+|..+|..+++
T Consensus 467 i~aQ~~~i~~Ldaan~Rl~sal~~lk~ 493 (495)
T PF12004_consen 467 IDAQEKRIAALDAANSRLMSALTQLKE 493 (495)
T ss_dssp ---------------------------
T ss_pred HHHhhhhcccccccccccccccccccc
Confidence 445566788888888888887766554
No 244
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=65.11 E-value=35 Score=27.07 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 006469 213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSL 270 (644)
Q Consensus 213 ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~l 270 (644)
++..+...+..|.......+. +..+..+++..+..|..||++|+-..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~-----------dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSS-----------DVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555554443322 22333456667777888888887543
No 245
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.36 E-value=97 Score=37.19 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHhc
Q 006469 339 KKLNALLIEKEAALEDMKKELQARPTS-KMVDDLRKKVKILQAV 381 (644)
Q Consensus 339 ~~L~~~l~~~~~~~~~L~~~l~~~~~~-sDYeeiKrEL~iLk~I 381 (644)
..|+.++..+..++..++.++...|.. ..|-+|+|+.++.+.+
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555565555555322 3666777776666554
No 246
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.96 E-value=3.2e+02 Score=32.81 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=24.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL 281 (644)
...|+..|.+|++-++.-...+-.+.++.+-..
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888888888777777776554
No 247
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=63.58 E-value=71 Score=27.19 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=24.1
Q ss_pred hhHhHHHHHHHHHHHHhHhhhhHH-HHHHHHHH
Q 006469 138 ENRKMKIELEEYRTEATHLKNQQS-TIRRLEER 169 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~lk~q~~-~~~~Lke~ 169 (644)
|+.-++..|-+|+.....+|.+|. +|.+|+..
T Consensus 40 Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 40 EMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888876 66666643
No 248
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=63.56 E-value=1.8e+02 Score=29.82 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIE 347 (644)
Q Consensus 313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~ 347 (644)
+..|.....++...+..++.........|...+..
T Consensus 152 ~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~ 186 (247)
T PF06705_consen 152 LKRLEEEENRLQEKIEKEKNTRESKLSELRSELEE 186 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555555555444433
No 249
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=63.46 E-value=3.1e+02 Score=32.51 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E 540 (644)
|.-...-+.+..+++.-.++++..+...+...+.-
T Consensus 382 LsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~ 416 (739)
T PF07111_consen 382 LSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQW 416 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344455556677777777776666666555543
No 250
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=63.17 E-value=91 Score=31.13 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhh
Q 006469 338 IKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415 (644)
Q Consensus 338 ~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~ 415 (644)
..++++.|..+..++.+++. ...+...+...|+..|..++.. ...||..|..|+..|+
T Consensus 134 k~e~EqLL~YK~~ql~~~~~--~~~~~~~~l~~v~~Dl~~ie~Q------------------V~~Le~~L~~k~~eL~ 191 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEE--GRSKSGKNLKSVREDLDTIEEQ------------------VDGLESHLSSKKQELQ 191 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 35667777777777777765 3333445777777777766633 2467777776665443
No 251
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=63.07 E-value=1.2e+02 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~ 543 (644)
....-.+++...++.++....+|+..+.....++..+...+..
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888888888888888777777777776665543
No 252
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.73 E-value=2.2e+02 Score=31.16 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHhHHHHHHHHHHHH
Q 006469 191 GLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQ 264 (644)
Q Consensus 191 el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~---~a~~aEleml~~dLEra~ 264 (644)
.+...+..-.+.+..||+-+..|++.+-...+.++..+... +.+|.+.+ .....++.-|+.+||..+
T Consensus 245 kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~-------~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 245 KLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEV-------QEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35556666677788899999888877666666655555544 44444332 233345555555554433
No 253
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=62.40 E-value=1.7e+02 Score=29.17 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 310 EKIISELNSELHNIETAL 327 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l 327 (644)
+..|.+|..+.+.+...|
T Consensus 108 Es~~~eLeEe~~~~~~nl 125 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNL 125 (205)
T ss_pred HHHHHHHHHHHHHhHhHH
Confidence 334555555555555444
No 254
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.22 E-value=2.5e+02 Score=34.09 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=10.4
Q ss_pred HhhhhhcCCCChHHHHHH
Q 006469 108 IYQKLYEAPDPYPALASI 125 (644)
Q Consensus 108 ~Y~~L~eaPDP~PlLe~s 125 (644)
.|+.+.-.|+..-.|+-|
T Consensus 477 ~Ykl~~G~~g~S~a~~iA 494 (782)
T PRK00409 477 TYRLLIGIPGKSNAFEIA 494 (782)
T ss_pred EEEEeeCCCCCcHHHHHH
Confidence 466666666655555443
No 255
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.21 E-value=2.4e+02 Score=31.42 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 006469 258 DEVERAQTRLLSLQ 271 (644)
Q Consensus 258 ~dLEra~~R~~~lE 271 (644)
.-+|.-+.|+..+|
T Consensus 305 E~~Es~qtRisklE 318 (395)
T PF10267_consen 305 EVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566777777777
No 256
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=61.93 E-value=3.5e+02 Score=32.50 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHhh-h-hhh--HhhHhHHHHHHHHHHHHhHhhh
Q 006469 118 PYPALASIAEQDLKL-S-ELE--SENRKMKIELEEYRTEATHLKN 158 (644)
Q Consensus 118 P~PlLe~s~~~~~~~-~-~le--~e~~~Lk~el~~l~~e~a~lk~ 158 (644)
|-|+|.-.++.+..- + ++- .....|+..+.-|+.||++.+.
T Consensus 456 ~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~ 500 (762)
T PLN03229 456 SELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANS 500 (762)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhccc
Confidence 677777666644211 0 111 1224577777777778877654
No 257
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.20 E-value=1.8e+02 Score=29.56 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=21.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLE 457 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE 457 (644)
|+..|-.++.++...+-.+..+..+...|...+..+..++..++.-...||
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 444444444444444444444444444444444444334444444443333
No 258
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.84 E-value=38 Score=25.62 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL 452 (644)
Q Consensus 412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l 452 (644)
|+|+.+...|+...+.|...++.|..+...+.+++..+...
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888888888888888888888887776543
No 259
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=60.40 E-value=1.3e+02 Score=27.10 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=23.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN 447 (644)
Q Consensus 403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~ 447 (644)
+|.-+-+..+-+...+..+......+...+..+..++..+...++
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555544443
No 260
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.38 E-value=1.4e+02 Score=27.46 Aligned_cols=17 Identities=6% Similarity=0.335 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006469 213 QLRQAKDSVATMQKLHE 229 (644)
Q Consensus 213 ql~~ae~~l~~L~~~~e 229 (644)
+++.++..+.+++.-|.
T Consensus 97 ~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 97 EVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 261
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.33 E-value=2.2e+02 Score=29.79 Aligned_cols=71 Identities=15% Similarity=0.336 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
+..+..++.+|..|....+.++.++.+.+.+.+ ...+|+.-+..+++-.+.+|. .|++.|..++-++....
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~----~~~~eik~l~~eI~~~~~~I~---~r~~~l~~raRAmq~nG 114 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEID----QSKAEIKKLQKEIAELKENIV---ERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444433222 223444444455544444443 35667777776665544
No 262
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.91 E-value=22 Score=36.12 Aligned_cols=52 Identities=33% Similarity=0.410 Sum_probs=43.4
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhh
Q 006469 507 KVICNQ--RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (644)
Q Consensus 507 ~Ivt~Q--RDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiryl 558 (644)
.-|..| |||-+.|..|+|.+++.+..+-..|++|-++|+.-|-.|.-+---+
T Consensus 77 NRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el 130 (292)
T KOG4005|consen 77 NRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHEL 130 (292)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334444 9999999999999999999999999999999999998886544333
No 263
>PF15294 Leu_zip: Leucine zipper
Probab=59.74 E-value=1.5e+02 Score=31.32 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred hhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHH----HHHHHHHHHHHHHH-----------
Q 006469 111 KLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQLEQ----------- 175 (644)
Q Consensus 111 ~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~----~~~~Lke~~~~le~----------- 175 (644)
+|.+. .|.|+|.. |+.+|+.|+..|+..+..+..+.. +-.+|+..+.++..
T Consensus 120 pl~e~-g~~~ll~k-------------Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~ 185 (278)
T PF15294_consen 120 PLNES-GGSELLNK-------------EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDL 185 (278)
T ss_pred ccccc-chHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 176 QMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235 (644)
Q Consensus 176 ~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L 235 (644)
-....--..+..+-.-+...++.....-....+.|...|......+=.++..+..+..+|
T Consensus 186 ~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeL 245 (278)
T PF15294_consen 186 SFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKEL 245 (278)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhH
No 264
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.71 E-value=1.2e+02 Score=34.68 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
....++..+..|+-..+.+..+++.+++.+..++..+++++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5677888899999999999999999999999999999999988876
No 265
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.59 E-value=1.4e+02 Score=30.31 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=39.1
Q ss_pred chHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHH
Q 006469 242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELH 321 (644)
Q Consensus 242 ~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~ 321 (644)
++++.....++++.+..++++-...+..++..+..|+.+.+. +..++.+|.++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~-------------------------~~~EydrLlee~~ 203 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG-------------------------LQDEYDRLLEEYS 203 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------cccHHHHHHHHHH
Confidence 344555566666777777777666666666666666665322 2445777777777
Q ss_pred HHHHHH
Q 006469 322 NIETAL 327 (644)
Q Consensus 322 ~L~~~l 327 (644)
.|+..+
T Consensus 204 ~Lq~~i 209 (216)
T KOG1962|consen 204 KLQEQI 209 (216)
T ss_pred HHHHHH
Confidence 777665
No 266
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=59.13 E-value=2.1e+02 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 427 EKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 427 ~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
+++.++..+..++.+..+=++.++..+.++.....
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~ 37 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSS 37 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45555555555566666666666666666655433
No 267
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=59.08 E-value=4e+02 Score=32.26 Aligned_cols=169 Identities=18% Similarity=0.261 Sum_probs=86.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~ 328 (644)
..-+++++..|......+....-...|.|..+++--++-.+ -+++.. +-+..|-.++.|+.-++--+.
T Consensus 837 aa~dfe~IIed~dc~~eit~ee~eqkElLele~E~egkldg-----------lieake-aeenkihK~egEltcaE~i~q 904 (1424)
T KOG4572|consen 837 AARDFEIIIEDGDCLKEITKEEGEQKELLELELENEGKLDG-----------LIEAKE-AEENKIHKKEGELTCAECIKQ 904 (1424)
T ss_pred chHHHHHHHhhhHHHHHHHHHhhhhHHHHHHhhhcccccch-----------HHHHHH-HHhhHHHHhhhhhHHHHHHHH
Confidence 34689999999999999998888888888877764333221 111111 113334444444443332211
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH------------------HHHHHH----hcc
Q 006469 329 NEREQ----HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRK------------------KVKILQ----AVG 382 (644)
Q Consensus 329 ~~r~~----~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKr------------------EL~iLk----~IE 382 (644)
.+.. ........-.++.++-+++.+|+..+.+++ -..++.|+ +|+.+. +++
T Consensus 905 -~kdee~altdhekeasicl~eeKDqei~EleailekQN--ca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~ele 981 (1424)
T KOG4572|consen 905 -MKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQN--CAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELE 981 (1424)
T ss_pred -cchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh--hhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0000 111112222334555566677777776652 12222221 111111 010
Q ss_pred cCCcccchhhhhcchhhhchh-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 383 YNSIEAEDWEVATNDEEMSKM-ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKI 446 (644)
Q Consensus 383 f~~~d~~~~~~a~~~~~~~~L-E~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el 446 (644)
-. .-..+ +.+...-.+.++.+.+.+|+.+.++..+++..-.++.++.+++
T Consensus 982 qk--------------~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 982 QK--------------ALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HH--------------HHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01112 3345555667777788888887777777777766666666553
No 268
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=58.76 E-value=2.2e+02 Score=29.11 Aligned_cols=102 Identities=17% Similarity=0.254 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 254 NLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333 (644)
Q Consensus 254 eml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~ 333 (644)
+-...+.+.-+..+..+-.+...|+.+|...+.. ........... + +...+..+....+....++..+......
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~-s----~~eLeq~l~~~~~~L~~~q~~l~~~~~~ 107 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILANL-S----LEELEQRLSQEQAQLQELQEQLQQENSQ 107 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445556666777777888888887665 11111111100 1 2222444666666666666666555444
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 006469 334 HMNEI---KKLNALLIEKEAALEDMKKELQA 361 (644)
Q Consensus 334 ~~~~~---~~L~~~l~~~~~~~~~L~~~l~~ 361 (644)
+.... ..+...+.+....+.++...|..
T Consensus 108 l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 108 LIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33332 33444444444444444444443
No 269
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=58.56 E-value=3.1e+02 Score=30.83 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 257 MDEVERAQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 257 ~~dLEra~~R~~~lE~ene~Lr~eL~ 282 (644)
..-+-.++.+...++++...+...+.
T Consensus 245 n~ql~~~~~~~~~~~a~l~~~~~~~~ 270 (458)
T COG3206 245 NTQLQSARARLAQAEARLASLLQLLP 270 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344455555566666555555543
No 270
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.96 E-value=2.9e+02 Score=33.55 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=11.3
Q ss_pred HhhhhhcCCCChHHHHHH
Q 006469 108 IYQKLYEAPDPYPALASI 125 (644)
Q Consensus 108 ~Y~~L~eaPDP~PlLe~s 125 (644)
.|+.+.-+|+..-.|.-|
T Consensus 472 ~Ykl~~G~~g~S~a~~iA 489 (771)
T TIGR01069 472 TYKLLKGIPGESYAFEIA 489 (771)
T ss_pred EEEECCCCCCCcHHHHHH
Confidence 477777777765555443
No 271
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.84 E-value=3.3e+02 Score=30.63 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=15.4
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH
Q 006469 145 ELEEYRTEATHLKNQQSTIRRLEERNRQLEQQM 177 (644)
Q Consensus 145 el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~ 177 (644)
.+.+|.. +.|.||...+..+......+++..
T Consensus 340 ~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~ 370 (493)
T KOG0804|consen 340 IMSEYEQ--SQLENQKQYYELLITEADSLKQES 370 (493)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhh
Confidence 3344444 555566655555555454444433
No 272
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.83 E-value=1.8e+02 Score=30.56 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-hhhHHHHHHHHHHHH
Q 006469 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR----PT-SKMVDDLRKKVKILQ 379 (644)
Q Consensus 313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~----~~-~sDYeeiKrEL~iLk 379 (644)
|..+.+++..++..+. .+.+..+.|+..+..+..+++..+..|+++ |- ..+|+.+..||+-|=
T Consensus 171 i~~~~~~~~~~~~~l~----~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLN----NLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4444444444444332 222333334444444444444444444433 10 124555555554443
No 273
>PRK09343 prefoldin subunit beta; Provisional
Probab=56.16 E-value=1.6e+02 Score=26.90 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~L 544 (644)
+-+.+..-|....+-+..++..|+.+...+..++..++..+..+
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777777777776666666666644433
No 274
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=55.79 E-value=2.9e+02 Score=29.75 Aligned_cols=27 Identities=4% Similarity=0.003 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEV 527 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el 527 (644)
..+.+-.+.++=.|-...+|.-|-++-
T Consensus 273 s~sdLksl~~aLle~indK~~al~Hqr 299 (319)
T PF09789_consen 273 SISDLKSLATALLETINDKNLALQHQR 299 (319)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555677777777777777665543
No 275
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=55.39 E-value=23 Score=38.03 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccc
Q 006469 502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562 (644)
Q Consensus 502 ~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~ 562 (644)
.++.+.-+.+....+...+..++-.+..++..++..--.|..|++ ++.-|++=.
T Consensus 103 lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~-------RV~~LEs~~ 156 (326)
T PF04582_consen 103 LSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLES-------RVKALESGS 156 (326)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTT
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHH-------HHHHHhcCC
Confidence 334445555666666777777888888888888888888888888 777776643
No 276
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.82 E-value=44 Score=29.92 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 006469 335 MNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQ 379 (644)
Q Consensus 335 ~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk 379 (644)
...+..+.+.+......+..+++++..+|+..|+..|+-++.-++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 445566777777788889999999999999999999999998888
No 277
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=54.49 E-value=3.6e+02 Score=30.33 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=30.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhc
Q 006469 410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT-----AKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 410 kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~-----~el~~~~~li~kLE~DL~~~~ 464 (644)
-+++|..+-..|=...++|+.-++.|.+++.... ..++.....+..+..+|..+.
T Consensus 207 ~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~ 266 (424)
T PF03915_consen 207 GKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMK 266 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666655432 235555555555555555554
No 278
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.89 E-value=1e+02 Score=34.78 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=26.5
Q ss_pred hhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006469 135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEI 187 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ 187 (644)
..+.++-|-.++.++++++..+..+-...+.--++++.-+...+..++.+|..
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44566666666666666666665443332222223333334445555555543
No 279
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=53.56 E-value=43 Score=25.95 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..-|.|-+....+|+.++..+......|+.++..|+.
T Consensus 17 ~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 17 RRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777888888888888888888888877764
No 280
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.72 E-value=1.3e+02 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=22.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
....|-++...-|-.|...+..|-.+++.|+.+|..
T Consensus 30 ~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 30 RLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666677777777777777643
No 281
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.48 E-value=81 Score=31.11 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=51.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 406 lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.|+.++..|..-|..+ ..|+.+..++..|..++..+...+...-......+++|..+-
T Consensus 6 ~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 6 DLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999998 678889999999999999999999999999999999998775
No 282
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.22 E-value=2.5e+02 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006469 213 QLRQAKDSVATMQKLHELAQ 232 (644)
Q Consensus 213 ql~~ae~~l~~L~~~~e~~Q 232 (644)
++..++..+..++......+
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~ 89 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELE 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 283
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.88 E-value=3.2e+02 Score=29.06 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 430 SLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 430 ~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
..+..+..++..+..+..++...|..|=++...+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~ 191 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEY 191 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554333
No 284
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.74 E-value=5.8e+02 Score=31.92 Aligned_cols=28 Identities=18% Similarity=0.044 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHhhhhcCChhHHHhh
Q 006469 12 KPNTSSSSPVSVISNFWKDFDLEKEKSL 39 (644)
Q Consensus 12 ~~~~~~~~~~~~a~~~W~~~dl~~lq~~ 39 (644)
.|++|.-|++-.|+.+--.++.+.|+..
T Consensus 32 GPNGSGKSNlMDAISFVLGekss~LR~~ 59 (1141)
T KOG0018|consen 32 GPNGSGKSNLMDAISFVLGEKSSHLRVS 59 (1141)
T ss_pred CCCCCchHHHHHHHHHHhcCCCcccccc
Confidence 4677889999999999999999998754
No 285
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.45 E-value=3.5e+02 Score=29.29 Aligned_cols=18 Identities=22% Similarity=0.395 Sum_probs=14.1
Q ss_pred hhhhhcchhhhHhHhhcC
Q 006469 627 GRFLLGNKYNLLYLFLFS 644 (644)
Q Consensus 627 ~r~vL~nr~~R~~f~~Y~ 644 (644)
||+|+.||.-=.+.|-||
T Consensus 357 grlviKTK~~g~ipf~yc 374 (401)
T PF06785_consen 357 GRLVIKTKNGGNIPFYYC 374 (401)
T ss_pred ceEEEEecCCCceeeEEE
Confidence 788888888777777766
No 286
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.97 E-value=61 Score=25.95 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADN 548 (644)
Q Consensus 512 QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN 548 (644)
+.+.+..++..|+.+...+...+..|+.++..|+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555555555555555544
No 287
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=50.77 E-value=49 Score=30.67 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccc
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~ 562 (644)
-.|++.+...+.+|..++.++..+++.++.|++.++. |..-|++|.
T Consensus 73 v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~-------k~e~l~~~~ 118 (135)
T KOG4196|consen 73 VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS-------KYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhh
Confidence 4578888888899999999999999999999998888 555566554
No 288
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.56 E-value=2.4e+02 Score=27.21 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 200 LEILQEREQALQDQLRQAKDSVATMQKLHELA 231 (644)
Q Consensus 200 ~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~ 231 (644)
.+.|....++|..++..++..++.|.......
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35677777788888888888888777655543
No 289
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.53 E-value=53 Score=37.04 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
.|++++...+...+.++..++.+|..|+.++..+...
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 5667777777777889999999999999999765543
No 290
>PRK11519 tyrosine kinase; Provisional
Probab=50.41 E-value=2.5e+02 Score=33.65 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhc
Q 006469 343 ALLIEKEAALEDMKKELQARPT-SKMVDDLRKKVKILQAV 381 (644)
Q Consensus 343 ~~l~~~~~~~~~L~~~l~~~~~-~sDYeeiKrEL~iLk~I 381 (644)
.++..+..++..++.++..+|. ...|.+|+|+.++-+.+
T Consensus 346 ~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~l 385 (719)
T PRK11519 346 EKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQV 385 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444431 23556666665554443
No 291
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=50.00 E-value=75 Score=28.29 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E 540 (644)
-.+.+.|....++++++.+..+++.++..+..+|..++.|
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4456789999999999999999999999999988887753
No 292
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.33 E-value=1.6e+02 Score=27.45 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 006469 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~I 381 (644)
+..+-..+..+.++|...+..+...+..+...+.+..+....++.++..+ ..|.+.|+.++.-++.+
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v--~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEV--REDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHH
Confidence 55566666777788888888888888888877777766666666666655 35666666666666544
No 293
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.31 E-value=1.9e+02 Score=32.13 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006469 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (644)
Q Consensus 258 ~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~ 329 (644)
.++..++.+++..++..+.+++|+....-... .+-+.+..+|.++++|..|+..|-...-+
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~-----------ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESR-----------AIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888766544431 34455666677777777777666544433
No 294
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.29 E-value=4.2e+02 Score=29.62 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s 286 (644)
..+++.+-.|..+...-+..+|.+|++|-..|-+...
T Consensus 158 ~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~ 194 (446)
T KOG4438|consen 158 LKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFN 194 (446)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777888888877777655443
No 295
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.24 E-value=76 Score=28.57 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs 560 (644)
|..+.+.|.+.+..|-.++..++..+..+--|-..|+-.|-+|++++.-+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888888888888888888999999999999999887755
No 296
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.03 E-value=95 Score=25.90 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
.-++.+|.+|.++...+......|+.+...|+.+=-..+++|+-
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555556654
No 297
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=48.69 E-value=5.4e+02 Score=30.72 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=54.6
Q ss_pred hHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHH
Q 006469 243 DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ---SANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSE 319 (644)
Q Consensus 243 ~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~---~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e 319 (644)
..+......++++++...+++...+..++.++..|...+- ....... .++.........|..|..+
T Consensus 181 ~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~i~~l~~~ 249 (670)
T KOG0239|consen 181 ESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIK-----------PLEGLESTIKKKIQALQQE 249 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhh-----------hhhhhhhHHHHHHHHHHHH
Confidence 3445556677888888888888777777777777777644 1111111 2222233334446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 320 LHNIETALSNEREQHMNEIKKLNALLIEKEA 350 (644)
Q Consensus 320 ~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~ 350 (644)
+..|...+..++.........++..+.....
T Consensus 250 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 280 (670)
T KOG0239|consen 250 LEELKAELKELNDQVSLLTREVQEALKESNT 280 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655554444444444443333
No 298
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.33 E-value=4.9e+02 Score=30.15 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 006469 365 SKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV---KLSEKTSLLETAEGKIAE 441 (644)
Q Consensus 365 ~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~---~~~~l~~~l~~l~~~~~~ 441 (644)
+..+++|...|..++.+.=-. +.+++. ++..-.+++.+|..+.. .+..++.++..+..++..
T Consensus 300 p~~L~ele~RL~~l~~LkrKy--------------g~s~e~-l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRKY--------------GASVEE-VLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDK 364 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--------------CCCHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888652111 123344 33444455555554432 345555555555555555
Q ss_pred HHHHHHHH
Q 006469 442 LTAKINEQ 449 (644)
Q Consensus 442 l~~el~~~ 449 (644)
+-.++...
T Consensus 365 ~a~~Ls~~ 372 (563)
T TIGR00634 365 AAVALSLI 372 (563)
T ss_pred HHHHHHHH
Confidence 55555555
No 299
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.20 E-value=2.7e+02 Score=27.00 Aligned_cols=32 Identities=19% Similarity=0.456 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTA 539 (644)
Q Consensus 508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~ 539 (644)
-|..=-++-...+.+|+..+....+.+..+..
T Consensus 142 ~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 142 ALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455556666666666666655555443
No 300
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.19 E-value=3.3e+02 Score=28.13 Aligned_cols=99 Identities=14% Similarity=0.230 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccccccc
Q 006469 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK 493 (644)
Q Consensus 414 L~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (644)
+..-+...+.-+.++..+ .+......+..++.+...|..+....+...+.
T Consensus 125 l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~---------------------------- 174 (264)
T PF06008_consen 125 LQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQ---------------------------- 174 (264)
T ss_pred HHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH----------------------------
Confidence 444555555555666555 36666777777777777777776666543332
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 006469 494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (644)
Q Consensus 494 ~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYE 553 (644)
...++.+.|......|..+..+|.+-+......+. +...|-..|-+.++
T Consensus 175 -------~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~----ea~~ln~~n~~~l~ 223 (264)
T PF06008_consen 175 -------ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTR----EAEDLNRANQKNLE 223 (264)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 45567788888888888888888888877654443 34445555555444
No 301
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.17 E-value=3.3e+02 Score=28.01 Aligned_cols=38 Identities=16% Similarity=0.387 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-cccCC
Q 006469 347 EKEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNS 385 (644)
Q Consensus 347 ~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~-IEf~~ 385 (644)
+....++.|+..+..- +.+.-+.+++=|+++.- ++||.
T Consensus 128 eR~~Rl~~L~~~l~~~-dv~~~ek~r~vlea~~~E~~yg~ 166 (251)
T PF11932_consen 128 ERQERLARLRAMLDDA-DVSLAEKFRRVLEAYQIEMEYGR 166 (251)
T ss_pred HHHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHHHhCC
Confidence 3444556666666542 34566777777888874 46654
No 302
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=47.33 E-value=1.1e+02 Score=24.74 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQK 455 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~k 455 (644)
.++.+|+..+..+...+.++.........+..++..++..+..
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777666666666666666655554444
No 303
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=46.78 E-value=1.8e+02 Score=27.42 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD---EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~---~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~ 279 (644)
.+...++.+...++..++.+...-.+|..+..... ..-.....+++-+..-+-..++++..|-.||+.||.
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 45555566666666666666555555554432211 111222233444444444455555555555555553
No 304
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=46.73 E-value=4.2e+02 Score=29.99 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 199 TLEILQEREQALQDQLRQAKDSVATMQKLHEL 230 (644)
Q Consensus 199 k~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~ 230 (644)
-+.++..++.+|..|+..++.+++.|...+..
T Consensus 435 ~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s 466 (489)
T KOG3684|consen 435 LLQELHSRQEELEKQIDTLESKLEALTASLSS 466 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888999999999999999887763
No 305
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.59 E-value=3.4e+02 Score=27.73 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 427 EKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 427 ~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
++...++.+...+..+.++..++...+..||..+..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554433
No 306
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.34 E-value=3.4e+02 Score=27.73 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=13.7
Q ss_pred hhHhhHhHHHHHHHHHHHHhHhh
Q 006469 135 LESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~lk 157 (644)
++..+...+.++.++...++.+.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~ 51 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAI 51 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666654
No 307
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=46.30 E-value=1.3e+02 Score=36.37 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=59.1
Q ss_pred HhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHH--HHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHH
Q 006469 52 ENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQE--EVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQD 129 (644)
Q Consensus 52 ~~s~~sRK~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~--EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~ 129 (644)
+.-..-|+.+..+-++|..---++++.-+.+|++++-. +|-.+.+.|+.+-..+..-|. |.+. .=--+|+.-+.++
T Consensus 357 ~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~~ak~~l~~~f~-~~~~-qa~~Il~m~L~~L 434 (742)
T PRK05561 357 SEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESDEPKANLMARFD-LSEI-QAEAILELRLRRL 434 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCccHHHHHHHHhC-CCHH-HHHHHHHhhHHHH
Confidence 34456778888888888766666778888888988765 555666777777666666552 2221 1111333333332
Q ss_pred HhhhhhhHhhHhHHHHHHHHHHHHhHhhhhH
Q 006469 130 LKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (644)
Q Consensus 130 ~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~ 160 (644)
.+. +..+|+.|..+|+++++.+++-+
T Consensus 435 t~l-----e~~kl~~E~~~l~~ei~~l~~iL 460 (742)
T PRK05561 435 AKL-----EEIEIRKEQDELRKEIAELEAIL 460 (742)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 45556666666666655554433
No 308
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.19 E-value=3.1e+02 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
...+...+++.+..+..++.+...|...|+.+..+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555555555555566666666655443
No 309
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=46.03 E-value=3.2e+02 Score=27.33 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhcc
Q 006469 417 ELTQLKVKLSEKTSLLETAEGKIAEL--------TAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 417 eLt~lR~~~~~l~~~l~~l~~~~~~l--------~~el~~~~~li~kLE~DL~~~~~ 465 (644)
|...|+.++.+|...+...+...... .---.+++.|....+..|....+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~ 153 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE 153 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45556666666666666666555541 11134567777777777766653
No 310
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.73 E-value=4.1e+02 Score=28.46 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 428 KTSLLETAEGKIAELTAKINEQQKLI 453 (644)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~li 453 (644)
++..+..++.++..+..+|.....+|
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555
No 311
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=45.70 E-value=41 Score=26.32 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 257 MDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (644)
Q Consensus 257 ~~dLEra~~R~~~lE~ene~Lr~eL~~a~s 286 (644)
..|=.-|..|+..++.+|..|+.+|+-.++
T Consensus 21 ~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 21 SLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445788999999999999999987654
No 312
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.56 E-value=85 Score=25.96 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN 447 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~ 447 (644)
|.+||..|+++...++.....|..+.++++.+.......+.
T Consensus 30 LKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 30 LKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888887777765544
No 313
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.51 E-value=3.8e+02 Score=28.09 Aligned_cols=100 Identities=12% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccc
Q 006469 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL 487 (644)
Q Consensus 408 l~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (644)
++-.|-|..-+..+.++.+.....|+....+...|.++|+..+...+++-..|+++++.
T Consensus 104 ~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqsi--------------------- 162 (338)
T KOG3647|consen 104 LEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSI--------------------- 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 33344444455555555555555566666666666666666666666666667666543
Q ss_pred ccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 488 SEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 488 ~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
-|--...-++|..+...|=+-.-.-++.++-|+..++-+-.
T Consensus 163 ------------------RP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 163 ------------------RPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34445556666666666666666666677777777766555
No 314
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.36 E-value=4.8e+02 Score=29.12 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 408 LDKNRKMEHELTQLKVKLSEKTSLLE----TA-EGKIAELTAKINEQQKLIQKLEDD 459 (644)
Q Consensus 408 l~kNrkL~~eLt~lR~~~~~l~~~l~----~l-~~~~~~l~~el~~~~~li~kLE~D 459 (644)
..--++|++|+..||......+.... ++ ++++.--+.-...+++|+..+|..
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33445677888877777665544332 22 222233333355667777777776
No 315
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=45.19 E-value=3.4e+02 Score=27.39 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=59.1
Q ss_pred hHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 139 NRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAK 218 (644)
Q Consensus 139 ~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae 218 (644)
+..|+..+...-..+.+++. |..|.+|+..+..+|..++..-. .+..++
T Consensus 11 ~d~lq~~i~~as~~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~------------------------------~~~~aK 59 (207)
T PF05546_consen 11 MDSLQETIFTASQALNDVTG-YSEIEKLKKSIEELEDELEAARQ------------------------------EVREAK 59 (207)
T ss_pred HHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHH
Confidence 33455555555555566555 66777788777666665533322 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc----chHH---HHhhH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 219 DSVATMQKLHELAQSQLFEVRAQ----SDEE---RVAKQ-SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 219 ~~l~~L~~~~e~~Q~~L~~~~~k----~~~~---~~a~~-aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
..-.........+|.++.++=++ .+.+ -+..- .+ -........|+..+.++|...+.+...|..+-
T Consensus 60 ~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~d-H~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~I 133 (207)
T PF05546_consen 60 AAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRND-HENEQAEEEAKEALEEAEEKVEEAFDDLMRAI 133 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445554444222 1111 11111 11 12334456678888888888888888887654
No 316
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=45.12 E-value=5.5e+02 Score=29.77 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=14.7
Q ss_pred HhhHHHHHHhHHHHHHHhhhhh
Q 006469 78 SLFNSLLKGYQEEVDNLTKRAK 99 (644)
Q Consensus 78 ~~~~~LLK~yQ~EID~LTkRsK 99 (644)
.....+|......|+.|.++=.
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~ 268 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELA 268 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777776443
No 317
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.08 E-value=2.8e+02 Score=26.38 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462 (644)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~ 462 (644)
.+|+ |+.+++.|+..|+....++..|+.++...+..+..-...+..++.-+..++..+..
T Consensus 21 ~~e~-ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 21 DYEQ-LLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566 78889999999886666666666655555555555555555555544444444443
No 318
>PLN02939 transferase, transferring glycosyl groups
Probab=44.80 E-value=7.2e+02 Score=31.04 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 006469 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQ 550 (644)
Q Consensus 507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~k 550 (644)
.-|+.-++||+....|+-.++.--...+...+.-++.|+..|-+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 358 QKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 56777788888888888888888888888888888888876654
No 319
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=44.75 E-value=1.5e+02 Score=25.13 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=33.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
|+..||.|...|...+. +++.+..-+..+..++.....++.+|+.++...+.
T Consensus 3 Li~qNk~L~~kL~~K~e-------EI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQE-------EIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666555544 45555555666777777888888888888877664
No 320
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=44.65 E-value=4.4e+02 Score=28.50 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (644)
Q Consensus 211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s 286 (644)
...+.-++.++..++..++.++..|.+++.+++--..... .. ....-+..++.+...++.+|+.+..
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~--~~-------~~~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQ--SS-------AQLSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666677777777666543211110 11 1122344556666666666665543
No 321
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.60 E-value=3.2e+02 Score=26.94 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=12.9
Q ss_pred hhHhHHHHHHHHHHHHhHhhhhH
Q 006469 138 ENRKMKIELEEYRTEATHLKNQQ 160 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~lk~q~ 160 (644)
-+.+|+..|..|+...+++..+.
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555554444
No 322
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.31 E-value=5.2e+02 Score=29.31 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHh
Q 006469 366 KMVDDLRKKVKILQA 380 (644)
Q Consensus 366 sDYeeiKrEL~iLk~ 380 (644)
-+|+.+..++.+-++
T Consensus 417 ~~~~sl~~~i~~~~~ 431 (622)
T COG5185 417 RQYDSLIQNITRSRS 431 (622)
T ss_pred HHHHHHHHHhcccHH
Confidence 578888888877654
No 323
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=44.08 E-value=2e+02 Score=33.22 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 369 DDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHEL------TQLKVKLSEKTSLLETAEGKIAEL 442 (644)
Q Consensus 369 eeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eL------t~lR~~~~~l~~~l~~l~~~~~~l 442 (644)
+.++.+|+.+-+=-.|.+|+ +|+...-+.-+|.|+++-..-|+-.. ..|=.+.++|..+-.-|+.++...
T Consensus 273 ~sl~eels~aGs~liGdvde----gAdllGMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~ 348 (832)
T KOG2077|consen 273 ESLFEELSSAGSGLIGDVDE----GADLLGMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAV 348 (832)
T ss_pred cchhhhhhhccccccccccc----hhhhhcchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHH
Confidence 45677777666543344432 22222233456666555333332222 233344455666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 006469 443 TAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 443 ~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.+-...++..|.+||..|-++..
T Consensus 349 kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 349 KQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777777764
No 324
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.59 E-value=4.2e+02 Score=27.99 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006469 212 DQLRQAKDSVATMQKLH 228 (644)
Q Consensus 212 ~ql~~ae~~l~~L~~~~ 228 (644)
+.+.+++.-|..+++++
T Consensus 124 kEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34445555555555554
No 325
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.59 E-value=83 Score=31.34 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHH
Q 006469 59 RKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDL 130 (644)
Q Consensus 59 K~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~ 130 (644)
+.|.++|+.+|. .++.|+|.=..=+++.. -.+...|.++-..+...+++.|+|+...+...
T Consensus 4 ~~le~kt~~mr~--------~~Kkl~kr~~~~~ea~~---~~~~~~f~~ll~~~~~~~~~~~al~~yf~~~~ 64 (192)
T cd07608 4 SNLERKTRLLRS--------YLKRLIKRIVKLIEAQD---QLVDLEFNELLSEAKFKNDFNVALDSYFDPFL 64 (192)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccccccHHHHHHhhHHH
Confidence 467778887775 36777776555555555 77889999999999999999999988777543
No 326
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=43.38 E-value=3.6e+02 Score=27.20 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=32.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456 (644)
Q Consensus 409 ~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kL 456 (644)
.-.++.+.+++.|+..+...+-++..|+..+.....+.+++...-..|
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777777777777666555444
No 327
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.62 E-value=1.2e+02 Score=24.91 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcc
Q 006469 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy 561 (644)
-..+..+.+|+.++..+..+...|+.+++.|+.|---+-+..|.--+|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 355677888888888888888888888888866555555555543333
No 328
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.57 E-value=1.4e+02 Score=24.47 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
.+.+|+.++.-.+.-+..++..+..+...|.+|+..|..+...
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666666666666666666665543
No 329
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.50 E-value=1.1e+02 Score=25.63 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhh
Q 006469 516 FRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (644)
Q Consensus 516 fr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiryl 558 (644)
|..|+.+||-.+.-+.++|..|-.-+...+..=-++-.++|||
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899998888888888777665555555444555577776
No 330
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=42.44 E-value=1.6e+02 Score=24.18 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=36.0
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (644)
.+||. |+.+-.+|..++..||.+...+..+-..|......+...++.
T Consensus 7 ~kle~-Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 7 AQVEH-LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666 778888888888888888888888888887777766666554
No 331
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.22 E-value=1.3e+02 Score=29.03 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ 450 (644)
Q Consensus 404 E~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~ 450 (644)
...|..-|++|..+++.|+.++..|+.+++.+.+++......+..+-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777777777777777776666666655555554433
No 332
>PRK11519 tyrosine kinase; Provisional
Probab=42.04 E-value=6.8e+02 Score=30.00 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 006469 206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD 243 (644)
Q Consensus 206 rE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~ 243 (644)
+....+.-+.-++.++..++..++.++..|.+.+.+++
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344455555666666666666667777766666543
No 333
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=42.00 E-value=2.2e+02 Score=24.25 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 306 LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIE 347 (644)
Q Consensus 306 l~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~ 347 (644)
+.+.-.++..+..-+-.|+......+...+.+|..|..+|..
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445555566666666666666666666666655543
No 334
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.85 E-value=6e+02 Score=29.26 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk 545 (644)
-..++..|-.+...+.-+-+++..++.++...+-+|+.||
T Consensus 475 qDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 475 QDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666667777777777777777777777777776
No 335
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.73 E-value=2.8e+02 Score=25.49 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 513 RDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.+.++.|..-|+-++..+.++...++.+++.|++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666
No 336
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.58 E-value=3.4e+02 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
.++......+.+....+..+..+...++..........
T Consensus 98 ~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 98 QELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444445555555555544444333
No 337
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.33 E-value=5.9e+02 Score=29.06 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 306 LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360 (644)
Q Consensus 306 l~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~ 360 (644)
|......|......+......-...+..+..++..|......+..+...|..-|.
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444444444444555555565555555555555556666554
No 338
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=41.19 E-value=1.5e+02 Score=27.74 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhcCCCC---hHHHHHHHH-HHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006469 110 QKLYEAPDP---YPALASIAE-QDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIV 185 (644)
Q Consensus 110 ~~L~eaPDP---~PlLe~s~~-~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v 185 (644)
+.+.+=||| +|++-...+ ...++..-+.++..++.-+..+.+++..+.....+ ...++.++.++..+....-+
T Consensus 13 ~A~~~nPdP~~~~Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~---~~~rl~~~r~r~~~L~hR~l 89 (141)
T PF13874_consen 13 QALRDNPDPSRLIPVPIIGFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLE---TSARLEEARRRHQELSHRLL 89 (141)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCCcCeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 186 EIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223 (644)
Q Consensus 186 ~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~ 223 (644)
. --.....+..+--.+..-|..|..+++.+...+..
T Consensus 90 ~--v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 90 R--VLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp H--HHHHHHHHHH-------------------------
T ss_pred H--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
No 339
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=41.19 E-value=3.7e+02 Score=26.70 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 260 VERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 260 LEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
||...+.+.+++.-+..-...|..+....
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na 97 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANA 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666666655443
No 340
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=41.16 E-value=3.3e+02 Score=26.09 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 142 MKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSV 221 (644)
Q Consensus 142 Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l 221 (644)
|+.-+.-|..-+..|..--.+.-+|. ++..-.+.++-..+.-|.+.+..+..+++=.+..+- .-+.+.|..+++..
T Consensus 9 L~~S~~lL~~Si~~L~~~~~D~pRL~-kvL~t~R~FeLvpe~dl~~Aq~~l~~EI~P~I~~Ll---~k~e~~l~kL~Rr~ 84 (153)
T PF08287_consen 9 LRSSVQLLQSSIETLDSGTSDFPRLT-KVLQTTRHFELVPEPDLQAAQQSLRDEIEPQINHLL---DKAEKHLEKLQRRE 84 (153)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHH-HHHcccCcccccCHHHHHHHHHHHHHhccHHHHHHH---HHHHHHHHHHHHHH
Confidence 33334444444444443334555555 455544555555555555555555554444443332 23456677788888
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 006469 222 ATMQKLHELAQSQLFEVRA 240 (644)
Q Consensus 222 ~~L~~~~e~~Q~~L~~~~~ 240 (644)
..|++.++-.+..|.....
T Consensus 85 ~tL~ak~EL~~~RL~~~~~ 103 (153)
T PF08287_consen 85 ETLKAKCELQQGRLSNYES 103 (153)
T ss_pred HHHHHHHHHHHHHhcCCcc
Confidence 8888888877777765433
No 341
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.08 E-value=7.1e+02 Score=29.90 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006469 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242 (644)
Q Consensus 203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~ 242 (644)
...|......-++-++.++..++..++.++..|.+.+.++
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555566667777777777777777777777665
No 342
>PLN03188 kinesin-12 family protein; Provisional
Probab=40.93 E-value=9e+02 Score=31.03 Aligned_cols=279 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHH-HhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHH
Q 006469 43 LGLKIAENQENSQKNRRKLAESTRDFKKASPEEKL-SLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPA 121 (644)
Q Consensus 43 ~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ekl-~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~Pl 121 (644)
+-++|+..|++-.. -|.|.-+..-|.+ ++|..|=..-|--||+-..-.----....-.|.-=-+..-|.-.
T Consensus 965 ~~~e~~~~~~e~~~--------~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~ 1036 (1320)
T PLN03188 965 TKIELKRVQDELEH--------YRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNT 1036 (1320)
T ss_pred hhHHHHHHHHHHHH--------HHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccc
Q ss_pred HHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Q 006469 122 LASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTL 200 (644)
Q Consensus 122 Le~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~ 200 (644)
+.-+.+.........+..+=+..+.. +. ..+-|.-.+.. -..+.+.+...+ ..++.+.+++.+-.
T Consensus 1037 i~e~~~~~~e~~l~~er~~w~e~es~------------wislteelr~eles-~r~l~Ekl~~EL-~~eK~c~eel~~a~ 1102 (1320)
T PLN03188 1037 IPESTDESPEKKLEQERLRWTEAESK------------WISLAEELRTELDA-SRALAEKQKHEL-DTEKRCAEELKEAM 1102 (1320)
T ss_pred cccccccchhHHHHHHHHHHHHHhhh------------heechHHHHHHHHH-HHHHHHHHHHHH-HHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---------HHhhHHhHHHHHHHHHHHHHHHHHHH
Q 006469 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---------RVAKQSEVNLLMDEVERAQTRLLSLQ 271 (644)
Q Consensus 201 ~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---------~~a~~aEleml~~dLEra~~R~~~lE 271 (644)
.....=+.-+-++-..++.+--.|-+.|...+.-+.|.+....-. ..+.+|||-.|..+-|+ .-.-+-
T Consensus 1103 q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~erek---er~~~~ 1179 (1320)
T PLN03188 1103 QMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREK---ERRYLR 1179 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 272 REKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIE 347 (644)
Q Consensus 272 ~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~ 347 (644)
.+|..|+.||-..-...+..+..-+--. +-|.-....++.....+.|+..+-..++.++..+..+|.-|.+.+.+
T Consensus 1180 ~enk~l~~qlrdtaeav~aagellvrl~-eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1180 DENKSLQAQLRDTAEAVQAAGELLVRLK-EAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 343
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.80 E-value=2.3e+02 Score=32.55 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=11.6
Q ss_pred hhHhHHHHHHHHHHHHhHhhh
Q 006469 138 ENRKMKIELEEYRTEATHLKN 158 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~lk~ 158 (644)
.+..|+.++..++.+++.+.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~ 92 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLED 92 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555543
No 344
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=40.01 E-value=1.8e+02 Score=33.52 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (644)
|+.|--.|..|.-.||-.+...+.--..++.++.+++.+|..
T Consensus 327 LIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~ 368 (832)
T KOG2077|consen 327 LIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKK 368 (832)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666665555555544455555444444433
No 345
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.88 E-value=2.9e+02 Score=25.09 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=28.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (644)
Q Consensus 403 LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (644)
+|.-+-+..+-+...+..+......+...+..++.++..+...++.
T Consensus 81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666665555443
No 346
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.87 E-value=81 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKADNV 549 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~ 549 (644)
|+.|||.++......+..++.|...++.+.-
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555555555555555433
No 347
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.82 E-value=4e+02 Score=26.62 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=18.6
Q ss_pred hhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHH
Q 006469 110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEE 148 (644)
Q Consensus 110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~ 148 (644)
..|..+-||.-+|+..+. +++..+.+++..+..
T Consensus 16 ~~ld~~EDP~~~l~q~ir------d~e~~l~~a~~~~a~ 48 (221)
T PF04012_consen 16 ELLDKAEDPEKMLEQAIR------DMEEQLRKARQALAR 48 (221)
T ss_pred HHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 455567788877666444 344445555544443
No 348
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.12 E-value=4.5e+02 Score=27.08 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 254 NLLMDEVERAQTRLLSLQREKDLLRSQL 281 (644)
Q Consensus 254 eml~~dLEra~~R~~~lE~ene~Lr~eL 281 (644)
..+..+++..+.|+..+..+++.++.++
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i 86 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRI 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 349
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.99 E-value=4.9e+02 Score=27.40 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=50.5
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 006469 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIET 325 (644)
Q Consensus 246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~ 325 (644)
+.....++.-+..||++|+-++.=|....+.+..-........ ..+.+-...++.+.....+...+..
T Consensus 147 S~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~------------~~e~eke~~~r~l~~~~~ELe~~~E 214 (269)
T PF05278_consen 147 SESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHE------------TREEEKEEKDRKLELKKEELEELEE 214 (269)
T ss_pred hHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888889999988888877776666554322211111 2233333444445555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 326 ALSNEREQHMNEIKKLNALLIEKEAALEDMKKE 358 (644)
Q Consensus 326 ~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~ 358 (644)
.+.+ ....++.+...+.+....+.+|+.+
T Consensus 215 eL~~----~Eke~~e~~~~i~e~~~rl~~l~~~ 243 (269)
T PF05278_consen 215 ELKQ----KEKEVKEIKERITEMKGRLGELEME 243 (269)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 2223344444444444444444444
No 350
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.95 E-value=1.8e+02 Score=32.36 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 528 RQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 528 ~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
.-++.+|..|++++..+.. |+.|
T Consensus 272 elHq~Ei~~LKqeLa~~EE-------K~~Y 294 (395)
T PF10267_consen 272 ELHQNEIYNLKQELASMEE-------KMAY 294 (395)
T ss_pred HHHHHHHHHHHHHHHhHHH-------HHHH
Confidence 3445566677777766665 7766
No 351
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=38.78 E-value=1.3e+02 Score=36.83 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=30.4
Q ss_pred hHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 139 NRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLR 215 (644)
Q Consensus 139 ~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~ 215 (644)
+..||+|++.|...+.+. .......+++++.+.++= -++++..|+||+...++...+++.+|+
T Consensus 366 irElReEve~lr~qL~~a--e~~~~~el~e~l~esekl------------i~ei~~twEEkl~ktE~in~erq~~L~ 428 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQA--EAMKLPELKEKLEESEKL------------IKEITVTWEEKLRKTEEINQERQAQLE 428 (1714)
T ss_pred HHHHHHHHHHHHHHHhhh--hhccchHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555555441 122344455544444321 234555666666655544444444443
No 352
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=38.42 E-value=80 Score=32.28 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ 450 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~ 450 (644)
|.+.|++|+++...||..+..|-.+...+...+..+++++.+++
T Consensus 102 L~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 102 LTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 77788888888888888887777777777777766666665544
No 353
>PRK11546 zraP zinc resistance protein; Provisional
Probab=38.12 E-value=2.1e+02 Score=27.17 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=0.0
Q ss_pred cHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHH
Q 006469 73 PEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTE 152 (644)
Q Consensus 73 ~~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e 152 (644)
+.|+.+.+..|.+.|+.++..|-..=..-..- |+.|...|.|-|- ++..+..|+..|+.++.++..+
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~E----LnALl~~~~pD~~---------kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYE----YNALLTANPPDSS---------KINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 006469 153 AT 154 (644)
Q Consensus 153 ~a 154 (644)
+.
T Consensus 112 ~~ 113 (143)
T PRK11546 112 RD 113 (143)
T ss_pred HH
No 354
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.82 E-value=4.7e+02 Score=26.84 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=3.6
Q ss_pred hHhhHHHHh
Q 006469 548 NVQLYGKIR 556 (644)
Q Consensus 548 N~kLYEkir 556 (644)
++.+-||.|
T Consensus 144 dv~~~ek~r 152 (251)
T PF11932_consen 144 DVSLAEKFR 152 (251)
T ss_pred CCCHHHHHH
Confidence 333444443
No 355
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=37.78 E-value=72 Score=34.32 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 502 ~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
-.+-+.-+.+...-....+.-|.-.+..+.-.|..|+..++.|.+
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 334455566666677778888888889999999999999999988
No 356
>PRK02119 hypothetical protein; Provisional
Probab=37.52 E-value=1.6e+02 Score=24.52 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 420 ~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556555566666666666666666666666666554
No 357
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.30 E-value=4.2e+02 Score=30.14 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAEL 442 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l 442 (644)
|+.+.|.+..++..+..++..+..+.+.|++.....
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSI 99 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 788888888888888888887777777665544333
No 358
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.23 E-value=2.7e+02 Score=29.52 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccC
Q 006469 312 IISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYN 384 (644)
Q Consensus 312 ~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~ 384 (644)
....|.++.-.+...+..+....+.-...+..+..++...+..++..+-.. ..+.+.++.|+.++|..-++
T Consensus 123 ~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~--s~~~~k~esei~~Ik~lvln 193 (300)
T KOG2629|consen 123 DKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQL--SRNIEKLESEINTIKQLVLN 193 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444444444455555556666667776665544 36888899999999976554
No 359
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=37.13 E-value=6.4e+02 Score=28.27 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=8.6
Q ss_pred HHHHHhhcChhHh
Q 006469 591 KKMYEDDINPFAA 603 (644)
Q Consensus 591 ~~~YE~~L~Pf~~ 603 (644)
+..++-.|+|+.+
T Consensus 443 rt~l~yll~Pl~~ 455 (457)
T TIGR01000 443 KTYFNYYKDKLLN 455 (457)
T ss_pred eeHHHHHHHHHcC
Confidence 5666777777754
No 360
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.98 E-value=1.9e+02 Score=23.71 Aligned_cols=50 Identities=10% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylq 559 (644)
....+.+..++.=.+.-+..++..+...+.+|+.|+..--.|+++++-++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666666677777777777777788876666777777765
No 361
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=36.86 E-value=5.8e+02 Score=27.71 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
.|+.|++--..+.+...-..+....+|.+-+.++.+.+ -|+..+--+|..++++.-...+++-.+++.-++..
T Consensus 150 qL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis-------~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~ 222 (561)
T KOG1103|consen 150 QLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQIS-------LMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRT 222 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhHHHHHHhhccCcccc
Confidence 35555555444444444444444455655555554443 36666666677777777777888887777655543
Q ss_pred CCCCCCCCCchhhhHhhh---hhhHHHHHHHHHHHHHHHHHHHH
Q 006469 289 GSRNSDTLDSNSYLENSL---SAKEKIISELNSELHNIETALSN 329 (644)
Q Consensus 289 ~~~~~~~~~~~s~le~el---~~ke~~i~~L~~e~~~L~~~l~~ 329 (644)
....+ ...+..+.-| ++.++.|.++.-|..-|.+.+.+
T Consensus 223 ~k~ee---e~aaERerglqteaqvek~i~EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 223 KKGEE---EAAAERERGLQTEAQVEKLIEEFDIEREFLRAELER 263 (561)
T ss_pred CCChH---HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21100 0000111001 12245566666666666666544
No 362
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.68 E-value=4.9e+02 Score=26.80 Aligned_cols=14 Identities=43% Similarity=0.562 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 006469 259 EVERAQTRLLSLQR 272 (644)
Q Consensus 259 dLEra~~R~~~lE~ 272 (644)
++.....++..++.
T Consensus 127 ~~~~~~~~l~~l~~ 140 (302)
T PF10186_consen 127 ELEERKQRLSQLQS 140 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 363
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=36.28 E-value=6.8e+02 Score=28.27 Aligned_cols=68 Identities=6% Similarity=0.107 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
++++.-++..++..+..+..++..|.+++.++.--..... .+.+ ..-+..||.+.-.++.+|......
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~--a~~~-------~~lI~~Le~qLa~~~aeL~~L~~~ 308 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKET--ITAI-------YQLIAGFETQLAEAKAEYAQLMVN 308 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888888888888888888888877653321111 1111 123444777777777777766543
No 364
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=36.08 E-value=3.4e+02 Score=24.77 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469 516 FRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (644)
Q Consensus 516 fr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki 555 (644)
.|.+..|+|.-..+.-+.|..|.+|.+.|+..|-+|.|-+
T Consensus 80 akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 80 AKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4677888998888888899999999999999999998865
No 365
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.34 E-value=70 Score=28.63 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547 (644)
Q Consensus 513 RDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~D 547 (644)
.-.+++++.+++.++..+..+...|+.+++.|+.|
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 33456667777777777777777777888888764
No 366
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.99 E-value=4.5e+02 Score=25.80 Aligned_cols=69 Identities=20% Similarity=0.378 Sum_probs=49.9
Q ss_pred CCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHH
Q 006469 71 ASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYR 150 (644)
Q Consensus 71 ~~~~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~ 150 (644)
+++++-+..+.+=+-+|+.-+-+|..-|..+|+-.=.+-+.|. ..+++.++++|+.++..+.
T Consensus 75 ~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt------------------~eemQe~i~~L~kev~~~~ 136 (201)
T KOG4603|consen 75 MVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT------------------TEEMQEEIQELKKEVAGYR 136 (201)
T ss_pred CCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------hHHHHHHHHHHHHHHHHHH
Confidence 5666778888888999999999999999999987654444433 2245566777777777666
Q ss_pred HHHhHhh
Q 006469 151 TEATHLK 157 (644)
Q Consensus 151 ~e~a~lk 157 (644)
+.+..++
T Consensus 137 erl~~~k 143 (201)
T KOG4603|consen 137 ERLKNIK 143 (201)
T ss_pred HHHHHHH
Confidence 6666554
No 367
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=34.76 E-value=2.9e+02 Score=30.88 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 223 TMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 223 ~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
=+..-.+++|.+|.-|+..|-+.......|-.+--.+.|..+.-++.|++....-++.|.+++..
T Consensus 504 ~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~ 568 (583)
T KOG3809|consen 504 FINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGR 568 (583)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567777777776666655655666666666666666777777777776666666665544
No 368
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=34.69 E-value=4.9e+02 Score=26.20 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 263 AQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLN 342 (644)
Q Consensus 263 a~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~ 342 (644)
-+..+..++.++..||..++.+...............+.. ...+-...+..|..++.+|.+.|..++.....+....+
T Consensus 85 Lrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~--~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe 162 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKA--QRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFE 162 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHH--hhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3446677888888888888876211111100000000000 00000122555666677777777666666655554444
Q ss_pred HHH---HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 006469 343 ALL---IEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378 (644)
Q Consensus 343 ~~l---~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iL 378 (644)
..- .+-...+-.++..|+. -|=++=+....|
T Consensus 163 ~ER~~W~eEKekVi~YQkQLQ~-----nYvqMy~rn~~L 196 (202)
T PF06818_consen 163 QERRTWQEEKEKVIRYQKQLQQ-----NYVQMYQRNQAL 196 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 332 2223345566666664 455544444333
No 369
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=34.65 E-value=6.6e+02 Score=27.64 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 259 EVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 259 dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
+-|.-.+|+.-|.+|++.|+++++..+...
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~ 117 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKRKADS 117 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345667788899999999999998876544
No 370
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=34.52 E-value=9.2e+02 Score=29.29 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 255 LLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 255 ml~~dLEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
-+..|+++.+..+..|+.+.-.+++++.++
T Consensus 67 r~~~ev~~l~~ea~~L~~~~~~v~~~~~~~ 96 (766)
T PF10191_consen 67 RVLREVDRLRQEAASLQEQMASVQEEIKAV 96 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555555555555443
No 371
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=34.41 E-value=90 Score=34.29 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcccc
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNN 563 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~ 563 (644)
+.+..+....|+.++|..+....+.+..+...+..+.. +++-++....
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~-------kl~DlEnrsR 189 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLED-------KLDDLENRSR 189 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHhhcc
Confidence 44555666666666666666666666666655555555 8888887654
No 372
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.18 E-value=4.7e+02 Score=27.99 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 006469 528 RQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 528 ~~~~~~i~~lr~E~~~Lk~ 546 (644)
..++..+..|+.+++.|+.
T Consensus 143 Er~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 143 ERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666655
No 373
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=33.75 E-value=63 Score=27.35 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=28.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (644)
Q Consensus 248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~ 279 (644)
...+|++....-|.++..|+..||.++..|-.
T Consensus 47 VtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 47 VTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999988753
No 374
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.71 E-value=3.3e+02 Score=23.90 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=14.4
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhhhh
Q 006469 134 ELESENRKMKIELEEYRTEATHLKNQ 159 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk~q 159 (644)
.+..++..|+.+-..+.++++.++..
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 34445555666666566666665544
No 375
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=33.56 E-value=2.7e+02 Score=22.85 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 006469 269 SLQREKDLLRSQ 280 (644)
Q Consensus 269 ~lE~ene~Lr~e 280 (644)
.|..+|..||.+
T Consensus 18 ~L~~EN~~Lr~q 29 (65)
T TIGR02449 18 RLKSENRLLRAQ 29 (65)
T ss_pred HHHHHHHHHHHH
Confidence 333344333333
No 376
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.45 E-value=2e+02 Score=26.07 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhh
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylq 559 (644)
|-.+.+.|.+.+..+-.++..++..+..+--|-..|+-.|-+|.+++.=++
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777888888888888888888888888888888888988663
No 377
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.39 E-value=1.2e+02 Score=30.72 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=42.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
|.++|..+..++..++.+.....+.++.++++...+..+.++......+|-.|=..+++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777777777777777776665555543
No 378
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.31 E-value=3.9e+02 Score=24.66 Aligned_cols=43 Identities=16% Similarity=0.344 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFE 237 (644)
Q Consensus 195 ~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~ 237 (644)
.+++-+..+..+...|...+..+...+..++..++..+..+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666666666666555555544443
No 379
>PF14282 FlxA: FlxA-like protein
Probab=33.29 E-value=3.5e+02 Score=24.10 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006469 339 KKLNALLIEKEAALEDMKKE 358 (644)
Q Consensus 339 ~~L~~~l~~~~~~~~~L~~~ 358 (644)
..|+.+|..+...+..+...
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 380
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.18 E-value=3.4e+02 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHHhHhhhhHHH
Q 006469 140 RKMKIELEEYRTEATHLKNQQST 162 (644)
Q Consensus 140 ~~Lk~el~~l~~e~a~lk~q~~~ 162 (644)
..|+.++..+...+..+..+..+
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 381
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=32.91 E-value=4.7e+02 Score=25.41 Aligned_cols=125 Identities=18% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhh
Q 006469 233 SQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLL---SLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAK 309 (644)
Q Consensus 233 ~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~---~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~k 309 (644)
..|....-..++..+-..+=.+++...++.+...+. ++|...-.++..++..++.. ....
T Consensus 9 ~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el-----------------~~~~ 71 (177)
T PF07798_consen 9 KRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSEL-----------------QNSR 71 (177)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 006469 310 EKIISELNSELHNIETALSNEREQHMNEIKKLNA---------------LLIEKEAALEDMKKELQARPTSKMVDDLRKK 374 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~---------------~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrE 374 (644)
...++.+..++..|+..++..+..+..++.++.. ........+.++..++.. +...+|.+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~-----ei~~lr~~ 146 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDT-----EIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q ss_pred HHHHH
Q 006469 375 VKILQ 379 (644)
Q Consensus 375 L~iLk 379 (644)
++-+|
T Consensus 147 iE~~K 151 (177)
T PF07798_consen 147 IESLK 151 (177)
T ss_pred HHHHH
No 382
>PRK14127 cell division protein GpsB; Provisional
Probab=32.85 E-value=2e+02 Score=26.11 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+..|..|....+.|-..|.+|.+++..+..++..++..+...+.
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~ 72 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGAS 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 7788999999999999999999999999999988888887665443
No 383
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.72 E-value=3.4e+02 Score=23.76 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235 (644)
Q Consensus 203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L 235 (644)
...+...|..++..++..+..+....+.++..|
T Consensus 70 ~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 70 KENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666677777777766666665444
No 384
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.36 E-value=3.2e+02 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 427 EKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 427 ~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
.|+.++...-..+.-+.-++++++..|..|....
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554443
No 385
>PRK10698 phage shock protein PspA; Provisional
Probab=32.22 E-value=5.5e+02 Score=26.03 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=6.6
Q ss_pred HHHHHHHHHHh
Q 006469 370 DLRKKVKILQA 380 (644)
Q Consensus 370 eiKrEL~iLk~ 380 (644)
.|-.||..||.
T Consensus 205 ~ve~ELa~LK~ 215 (222)
T PRK10698 205 EISEQLAALKA 215 (222)
T ss_pred hHHHHHHHHHH
Confidence 45566666663
No 386
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.21 E-value=7.6e+02 Score=27.66 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=31.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
|.+.-..+..-|...+....++......|+..+..+..=..++...+.++..+.
T Consensus 246 L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~ 299 (446)
T KOG4438|consen 246 LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDG 299 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444455666666666666666666666666666666666665555
No 387
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.10 E-value=7.7e+02 Score=27.68 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006469 310 EKIISELNSELHNIETALS 328 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~ 328 (644)
+.++.+|...|.-|.....
T Consensus 409 eqevkrLrq~nr~l~eqne 427 (502)
T KOG0982|consen 409 EQEVKRLRQPNRILSEQNE 427 (502)
T ss_pred HHHHHHhccccchhhhhhh
Confidence 5556666666665554443
No 388
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=32.03 E-value=5.4e+02 Score=25.89 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006469 269 SLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (644)
Q Consensus 269 ~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l 327 (644)
.||++.+.||.+=........+. ..+..+.|...|..|+..|-.|+.++.+|+.+.
T Consensus 32 ~lE~EL~~lr~qq~~~~~~~~~~---~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 32 RLERELESLRAQQRQGNSSGSSS---PSNNASNLKELLREKEERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHhhccCCCCCCCC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888754433322211 123455677889999999999999999998776
No 389
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=31.88 E-value=8e+02 Score=27.77 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--------cchHH-HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 214 LRQAKDSVATMQKLHELAQSQLFEVRA--------QSDEE-RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 214 l~~ae~~l~~L~~~~e~~Q~~L~~~~~--------k~~~~-~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
-..++.+--.|-+.|...+.-+.|.+. +.+.. ..+.++|+-.|..+-|+ .-.-+-.+|..|+.||-..
T Consensus 346 YadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEk---Er~~l~~eNk~L~~QLrDT 422 (488)
T PF06548_consen 346 YADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREK---ERRFLKDENKGLQIQLRDT 422 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhH
Confidence 334444445555555555444443322 11222 34677899988887555 2234667788888887544
Q ss_pred hhhcCCCCCCCCCchhhhHhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 285 NDEAGSRNSDTLDSNSYLENSL-------SAKEKIISELNSELHNIETALSNEREQHMNEIKKLNAL 344 (644)
Q Consensus 285 ~s~~~~~~~~~~~~~s~le~el-------~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~ 344 (644)
-...+..+ .|-..| ...+......++++..+-..++.++..+..++..+.+.
T Consensus 423 AEAVqAag--------Ellvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~ 481 (488)
T PF06548_consen 423 AEAVQAAG--------ELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQY 481 (488)
T ss_pred HHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332111 111111 11122233445555555555555555555555444433
No 390
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.79 E-value=2.8e+02 Score=26.54 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=29.7
Q ss_pred hhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH
Q 006469 135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQM 177 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~ 177 (644)
+..+...++.+|.+.+..+..|+....++..|+.++..|+...
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4456677777777777777777766667777777666665544
No 391
>PRK15396 murein lipoprotein; Provisional
Probab=31.70 E-value=1.7e+02 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 253 VNLLMDEVERAQTRLLSL 270 (644)
Q Consensus 253 leml~~dLEra~~R~~~l 270 (644)
+.-...|.+|||+|+-..
T Consensus 55 ~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 55 VQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333456778888887543
No 392
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.33 E-value=2.5e+02 Score=26.86 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 256 LMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHM 335 (644)
Q Consensus 256 l~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~ 335 (644)
...|++....++..++.++..|+.+|..+...... |.....-+..|..++..|+.........+.
T Consensus 11 ~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~---------------Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 11 NGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKD---------------LKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777888777766655421 111111244555555555555555444444
Q ss_pred HHHH
Q 006469 336 NEIK 339 (644)
Q Consensus 336 ~~~~ 339 (644)
..+.
T Consensus 76 ~~l~ 79 (155)
T PF06810_consen 76 AKLA 79 (155)
T ss_pred HHHH
Confidence 4443
No 393
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.26 E-value=7.2e+02 Score=27.06 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 404 ESLLLDKNRKMEHE------LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 404 E~lLl~kNrkL~~e------Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
+.++.+|.|.|+.+ |..+.....-|..+++...+...-+..+...+++.+.-||.|+....
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 66788888877764 44555555556666666666666667778888888888999888765
No 394
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=31.22 E-value=3.5e+02 Score=30.05 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 414 L~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
..+-|+.|+.......+-++.||.+-+.+..-++..++.-+.||..-.
T Consensus 123 AKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCs 170 (558)
T PF15358_consen 123 AKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCS 170 (558)
T ss_pred cccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHH
Confidence 345667777666666666666666666665555555555555554433
No 395
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.06 E-value=4.9e+02 Score=30.30 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 006469 503 SSMLKVICNQRDRFRARLR 521 (644)
Q Consensus 503 ~siL~Ivt~QRDRfr~rn~ 521 (644)
..+-..+++|.++|+.++.
T Consensus 516 ~a~~~~~~~~~~~~~~~l~ 534 (555)
T TIGR03545 516 KAFKKEIAAQIEKAKAKLK 534 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677888888887754
No 396
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.04 E-value=3.5e+02 Score=23.35 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 265 TRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 265 ~R~~~lE~ene~Lr~eL~ 282 (644)
.+-..||+++..|..+|.
T Consensus 8 ~~r~~LeqeV~~Lq~~L~ 25 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQ 25 (88)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344556666666655554
No 397
>PRK10963 hypothetical protein; Provisional
Probab=31.03 E-value=96 Score=31.46 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
.++.|.-|.+++|.||.+||.++..+-..- .+|-.+|+++.-
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A-----------~~Ne~l~~~~~~ 79 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLLMEQA-----------IANEDLFYRLLP 79 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 678899999999999999999998875432 356666666655
No 398
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=30.83 E-value=5e+02 Score=25.07 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQK 226 (644)
Q Consensus 195 ~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~ 226 (644)
.|......|..+-..|+.....++.+++.+..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444445555555666666666655555444
No 399
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.69 E-value=4e+02 Score=23.99 Aligned_cols=15 Identities=47% Similarity=0.587 Sum_probs=8.4
Q ss_pred HHhhhhhcCCCChHH
Q 006469 107 NIYQKLYEAPDPYPA 121 (644)
Q Consensus 107 ~~Y~~L~eaPDP~Pl 121 (644)
+++-...-..||||+
T Consensus 21 N~~~~~~~~fDpyPF 35 (108)
T PF06210_consen 21 NILAPPRPAFDPYPF 35 (108)
T ss_pred HhhccccCCCCCccH
Confidence 333333335699983
No 400
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=30.65 E-value=1.7e+02 Score=25.80 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=40.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEG---KIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~---~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
|-..-|.+..++..+|.....+...+..+.. +...+.++...++..+..+|..+..+..
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888777777777665 3566666666666666666666666553
No 401
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.65 E-value=2.4e+02 Score=22.44 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 415 EHELTQLKVKLSEKTSLLETAEGKI 439 (644)
Q Consensus 415 ~~eLt~lR~~~~~l~~~l~~l~~~~ 439 (644)
++++..+...+..++.+++.+.+.+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 402
>PRK04406 hypothetical protein; Provisional
Probab=30.63 E-value=2.9e+02 Score=23.15 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 421 lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555566666666666666666555553
No 403
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.56 E-value=7e+02 Score=29.10 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=13.4
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHHh
Q 006469 356 KKELQARPTSKMVDDLRKKVKILQA 380 (644)
Q Consensus 356 ~~~l~~~~~~sDYeeiKrEL~iLk~ 380 (644)
.+....+|+..+++++|+.+..|+.
T Consensus 181 ~~~~~~Lp~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 181 KKRKKDLPNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHh
Confidence 3333344444566666666666664
No 404
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.36 E-value=2.4e+02 Score=25.12 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=41.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc
Q 006469 405 SLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAEL--TAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 405 ~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l--~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.+++.+..--..++..+.........++..++.++..+ ..++..++..+.+++.++..+..
T Consensus 24 ~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 24 WLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556655556777777777777777777777777777 66677777777777777666654
No 405
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=30.17 E-value=8.3e+02 Score=27.44 Aligned_cols=86 Identities=12% Similarity=0.252 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 006469 367 MVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAEL---- 442 (644)
Q Consensus 367 DYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l---- 442 (644)
-+..|+.++..+|.+-+....+ +. =..+..-+++|..+-..|=...++|+.-++.+.+++...
T Consensus 181 sm~~i~~k~~~~k~~~~~~~~~--------s~-----R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp 247 (426)
T smart00806 181 SIKDILEKIDKFKSSSLSASGS--------SN-----RAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRP 247 (426)
T ss_pred HHHHHHHHHHHHHHhhhccCCC--------cc-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4556666677777653432210 00 123444566777777777777888888888887776653
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhcc
Q 006469 443 -TAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 443 -~~el~~~~~li~kLE~DL~~~~~ 465 (644)
...+....+.|..+..+|..++.
T Consensus 248 ~~~qLe~v~kdi~~a~keL~~m~~ 271 (426)
T smart00806 248 SKKQLETVQKELETARKELKKMEE 271 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666654
No 406
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=30.05 E-value=6.3e+02 Score=26.04 Aligned_cols=9 Identities=56% Similarity=1.043 Sum_probs=4.2
Q ss_pred CCChHHHHH
Q 006469 116 PDPYPALAS 124 (644)
Q Consensus 116 PDP~PlLe~ 124 (644)
|-||.++..
T Consensus 17 ~~~~~l~~~ 25 (264)
T PF06008_consen 17 PAPYKLLSS 25 (264)
T ss_pred hhHHHHHHH
Confidence 444555443
No 407
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=29.79 E-value=5.8e+02 Score=25.49 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCC
Q 006469 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPD 499 (644)
Q Consensus 420 ~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (644)
.=-..+.+.+-+...|+.+...++..|...+.-...|..||...+.
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~---------------------------------- 140 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQ---------------------------------- 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 3334455555566666666667777777777777777777765442
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 500 QDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 500 ~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.--.|+....--|.....|+.+....+.++..|+..|..|+.
T Consensus 141 -----Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 141 -----QQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455555666777777777777777777777777766665
No 408
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.58 E-value=3e+02 Score=22.23 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006469 207 EQALQDQLRQAKDSVATMQKLHE 229 (644)
Q Consensus 207 E~~L~~ql~~ae~~l~~L~~~~e 229 (644)
...++.+|..++..+.+|...++
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 409
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=29.36 E-value=1.8e+02 Score=25.11 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHH
Q 006469 213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRL 267 (644)
Q Consensus 213 ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~ 267 (644)
++..+..++..|.+..+ +-..+..+..+.++-...+.+|||+|+
T Consensus 25 kvdqLss~V~~L~~kvd-----------ql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIA-----------RLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
No 410
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.36 E-value=5.2e+02 Score=24.88 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=50.2
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 006469 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL-IQKLEDDIL 461 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l-i~kLE~DL~ 461 (644)
+++..+|-.|..++...+........+...-....+..+.....+....... ..++..+..
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~ 94 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL 94 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999998888888888898888887776655 555544444
No 411
>PRK00846 hypothetical protein; Provisional
Probab=29.33 E-value=2.3e+02 Score=24.04 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhh
Q 006469 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiryl 558 (644)
+.+..|+.+||..+.-+...|..|-..+-..+..--+|-+.+++|
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=29.24 E-value=4.6e+02 Score=24.13 Aligned_cols=33 Identities=42% Similarity=0.747 Sum_probs=26.7
Q ss_pred HHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhhh
Q 006469 60 KLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKR 97 (644)
Q Consensus 60 ~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTkR 97 (644)
.|.+.+++|- +|+..|..+++.|-.-+|.+.++
T Consensus 24 ~Lk~ec~~F~-----~ki~~F~~iv~~~~~~~~~~A~~ 56 (120)
T PF14931_consen 24 ELKEECKEFV-----EKISEFQKIVKGFIEILDELAKR 56 (120)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776 48999999999988888877766
No 413
>smart00338 BRLZ basic region leucin zipper.
Probab=29.17 E-value=2e+02 Score=22.95 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547 (644)
Q Consensus 513 RDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~D 547 (644)
.+.+..++..|+.+...+..++..|+.++..|+.-
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555666666666555543
No 414
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=29.02 E-value=5.9e+02 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=12.4
Q ss_pred HHHHHhhHHHHHHhHH-HHHHHh
Q 006469 74 EEKLSLFNSLLKGYQE-EVDNLT 95 (644)
Q Consensus 74 ~ekl~~~~~LLK~yQ~-EID~LT 95 (644)
++|.=.|..|-|++-. ||-+-|
T Consensus 114 dD~~ItVedLWeaW~~Sev~nWT 136 (575)
T KOG4403|consen 114 DDKHITVEDLWEAWKESEVHNWT 136 (575)
T ss_pred CccceeHHHHHHHHHhhhhhcch
Confidence 4556667777777433 444433
No 415
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=28.93 E-value=5.7e+02 Score=25.20 Aligned_cols=130 Identities=16% Similarity=0.291 Sum_probs=70.0
Q ss_pred HHHHHhhHhhHHHHHHHHHHhHHhhc---CCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHH
Q 006469 45 LKIAENQENSQKNRRKLAESTRDFKK---ASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPA 121 (644)
Q Consensus 45 ~ei~~~q~~s~~sRK~La~~Tk~Fkk---~~~~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~Pl 121 (644)
--|.......+.--|.+-+.++.|=. +|.-+-...|..|+=.--.-||.| |-.|.++|..|.+--...|.
T Consensus 39 a~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~l-------ee~fdd~~d~l~~q~eq~~~ 111 (189)
T TIGR02132 39 ALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLI-------EEFFDDKFDELEAQQEQAPA 111 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCch
Confidence 34445555555566666667766654 666677777777777777777765 77788888887722222222
Q ss_pred HHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHH
Q 006469 122 LASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLE 201 (644)
Q Consensus 122 Le~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~~~v~~ke~el~~~~~ek~~ 201 (644)
| ..++.+|+..|..|.+++..+ =+|-+.--.-.-.+.++++..++.....+.+.+-+|..
T Consensus 112 ~-------------~~~v~~~~q~~~~l~~K~D~~-------L~llE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (189)
T TIGR02132 112 L-------------KKDVTKLKQDIKSLDKKLDKI-------LELLEGQQKTQDELKETIQKQIKTQGEQLQAQLLEKQE 171 (189)
T ss_pred H-------------HhHHHHHHHHHHHHHHHHHHH-------HHHHhcCccchhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 223444444444443333332 11111111122345566666666666666665555544
No 416
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.82 E-value=6.9e+02 Score=26.13 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHH
Q 006469 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVER 262 (644)
Q Consensus 203 ~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEr 262 (644)
+++-+.....++..++.++..|.+.+..+|.+|.-+.+=.|.+=-.++-.+.-+...|..
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~ 131 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQ 131 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 333344456677788888888888888888888877665454433333344444444433
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.77 E-value=1.1e+03 Score=28.76 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=10.4
Q ss_pred cCCcHHHHHhhHHHHHHh
Q 006469 70 KASPEEKLSLFNSLLKGY 87 (644)
Q Consensus 70 k~~~~ekl~~~~~LLK~y 87 (644)
-+++.+...-...+|+.+
T Consensus 414 GtD~~eg~ala~aiLe~l 431 (771)
T TIGR01069 414 GTDPDEGSALAISILEYL 431 (771)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 355666655555666654
No 418
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.57 E-value=4.8e+02 Score=24.22 Aligned_cols=59 Identities=14% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLL 277 (644)
Q Consensus 208 ~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~L 277 (644)
+.|..+|..+..++.+..+--+.++.+.. .....++.+..|++..+..+..|+-....+
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~-----------~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVT-----------EVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444443333332222 223334555555555555555555544433
No 419
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=28.44 E-value=3.5e+02 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 422 KVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 422 R~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
+....++...+..-...+..+.+++.-+.=-|.+|+..+..++..
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555566666666666543
No 420
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=28.36 E-value=9.2e+02 Score=27.39 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 006469 421 LKVKLSEKTSLLETAEGKIAELTAK-INEQQKLIQKLEDDILK 462 (644)
Q Consensus 421 lR~~~~~l~~~l~~l~~~~~~l~~e-l~~~~~li~kLE~DL~~ 462 (644)
|+......+.++-.|+.++..-+++ +++.++|-.+|+.=+..
T Consensus 483 LkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 483 LKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555544 66666666666655443
No 421
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.19 E-value=3.5e+02 Score=22.53 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=14.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (644)
Q Consensus 410 kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e 445 (644)
...-|+.++..|+..+..+......|..+...+..+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443344444433333333
No 422
>PRK04325 hypothetical protein; Provisional
Probab=28.17 E-value=2.5e+02 Score=23.50 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhh
Q 006469 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiryl 558 (644)
+.+..|+.+||..+.-+..+|..|-..|-.-+.+--.|-..++.|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 423
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=28.14 E-value=4.2e+02 Score=23.40 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 207 E~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
|.++..+|..+..-+.+.+...........-|.....-+....+-=+......+++.+.++..++.+|..|-.+|...
T Consensus 29 Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 29 ERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447777888888887777665553222111111111111111111124455666777889999999999999888764
No 424
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.90 E-value=9.8e+02 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.454 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 006469 348 KEAALEDMKKELQARPTSKMVDDLRKKVKILQ 379 (644)
Q Consensus 348 ~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk 379 (644)
....+.++..++.++| .|+++|......+|
T Consensus 410 ~~~~l~~v~eKVd~Lp--qqI~~vs~Kc~~~K 439 (531)
T PF15450_consen 410 MEKHLKEVQEKVDSLP--QQIEEVSDKCDLHK 439 (531)
T ss_pred HHHHHHHHHHHHHhhh--HHHHHHHHHHHHHH
Confidence 3344556666666654 66666666666666
No 425
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.85 E-value=2e+02 Score=25.75 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcccc
Q 006469 517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNN 563 (644)
Q Consensus 517 r~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~ 563 (644)
..++..|.++|+.-.+.+..+.+|+++|.=-|-.|--+|-.||.=..
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999875433
No 426
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=27.79 E-value=5.8e+02 Score=29.06 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHH
Q 006469 431 LLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVIC 510 (644)
Q Consensus 431 ~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt 510 (644)
-+++..+.-..+.+++.+.+.+..|-+..+..+.. -|.--.
T Consensus 36 ~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldv---------------------------------------klkha~ 76 (604)
T KOG3564|consen 36 DFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDV---------------------------------------KLKHAR 76 (604)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccc---------------------------------------hHHHHH
Confidence 34444455556666666666666666665544432 123334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhccccccc
Q 006469 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV 566 (644)
Q Consensus 511 ~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~~~ 566 (644)
.|.|-.-+++..+|.++.....+|..++.-+.-=..-|+.+-++..|.--|.+.+.
T Consensus 77 ~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~~s~~~~d~~~f~~~~~~~~~ 132 (604)
T KOG3564|consen 77 NQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDISGSIQLSDEQKFALAFLNRGQ 132 (604)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccccCC
Confidence 45555556666777777777777777766555555668888889999888876544
No 427
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=27.78 E-value=4e+02 Score=22.99 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
.......|+.++..+...+++...+..-||.-|.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~ 39 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALG 39 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455667888899999999999999999888764
No 428
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.74 E-value=2.7e+02 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQL 530 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~ 530 (644)
..++..-..|=+..+.+||.+++.+
T Consensus 234 ~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 234 SVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666667777888888887754
No 429
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.38 E-value=2.2e+02 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.--+.+|.+..+.+|.+|+.+...+..+|..|+...+-+..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 34456666666666667777777777777766665555555
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.24 E-value=1e+03 Score=27.55 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=30.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 409 DKNRKMEHELTQLKVKLSEKTSLLETAE---GKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 409 ~kNrkL~~eLt~lR~~~~~l~~~l~~l~---~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
.-.|++...+..+-.....+..++..+. ..+..+..++...+....++-..|...
T Consensus 315 ~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 315 RLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555443 356666666666666666665555554
No 431
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=27.06 E-value=2.1e+02 Score=22.87 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 425 LSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 425 ~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
..++..++..|.+.+............-+.+||++++++..
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk 43 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRK 43 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35677888888888999999999999999999999999874
No 432
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.00 E-value=3.7e+02 Score=22.39 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAEL 442 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l 442 (644)
++.+-+-.||..+.+++..+..+...+..+
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333333333
No 433
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.94 E-value=3.2e+02 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~L 544 (644)
....-..++....+.++.....+..++.....++..+...+..+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666555443
No 434
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.74 E-value=1.7e+02 Score=22.13 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhh
Q 006469 523 TEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (644)
Q Consensus 523 LE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiryl 558 (644)
||.+...+...-..|+.+.++|+.+|-+|=-.|.-|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 435
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.67 E-value=1.2e+02 Score=24.19 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=20.3
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 246 ~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
..+...|++.+.. +|.+|+.+|.+|..+=+-.++..
T Consensus 9 m~AVrEEVevLK~-------~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 9 MYAVREEVEVLKE-------QIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp GGT-TTSHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777766 55555666555555544444444
No 436
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.56 E-value=5.3e+02 Score=25.30 Aligned_cols=8 Identities=13% Similarity=0.435 Sum_probs=3.3
Q ss_pred HHhHHHHH
Q 006469 250 QSEVNLLM 257 (644)
Q Consensus 250 ~aEleml~ 257 (644)
++.++|+.
T Consensus 70 QDqF~~~~ 77 (201)
T KOG4603|consen 70 QDQFDMVS 77 (201)
T ss_pred HHhhcCCC
Confidence 34444443
No 437
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.56 E-value=6.5e+02 Score=25.01 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=36.3
Q ss_pred HHHHhhhhhcCCCChHHHHHHHH--------HHHhhhhhhHhhHhHH-----HHHHHHHHHHhHhhhhHHHHHHHHHHHH
Q 006469 105 FLNIYQKLYEAPDPYPALASIAE--------QDLKLSELESENRKMK-----IELEEYRTEATHLKNQQSTIRRLEERNR 171 (644)
Q Consensus 105 Fl~~Y~~L~eaPDP~PlLe~s~~--------~~~~~~~le~e~~~Lk-----~el~~l~~e~a~lk~q~~~~~~Lke~~~ 171 (644)
-..||+.+-.-|-=.||.+..-+ .+..-..+-+.+.+|+ ..+..+.+-|+.|...--++.-|..|+.
T Consensus 17 ~mevfk~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~ 96 (190)
T PF05266_consen 17 SMEVFKKVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLN 96 (190)
T ss_pred HHHHHHcCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 46788887777777887744322 1111112233344433 4555555556665443335666666655
Q ss_pred HH
Q 006469 172 QL 173 (644)
Q Consensus 172 ~l 173 (644)
.|
T Consensus 97 kL 98 (190)
T PF05266_consen 97 KL 98 (190)
T ss_pred HH
Confidence 43
No 438
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.53 E-value=1.3e+02 Score=26.37 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
+..+|++++..++.++..++.+++.+++
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666
No 439
>PRK00295 hypothetical protein; Provisional
Probab=26.45 E-value=3.1e+02 Score=22.48 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 421 lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
+...+.+|+.++.-.+.-+..++..+..+...|..|...|..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.27 E-value=1.9e+02 Score=30.61 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=13.0
Q ss_pred hhhHhhHhHHHHHHHHHHHHhH
Q 006469 134 ELESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~ 155 (644)
.+..||.+|++++.+++.++..
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665444444
No 441
>PF14992 TMCO5: TMCO5 family
Probab=26.13 E-value=8e+02 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 006469 265 TRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 265 ~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
...+-||+.|+.|..-+....+.
T Consensus 70 ~e~~~LE~~ne~l~~~~~elq~k 92 (280)
T PF14992_consen 70 LETAKLEKENEHLSKSVQELQRK 92 (280)
T ss_pred hhhHHHhhhhHhhhhhhhhhhhh
Confidence 34477899998885554444443
No 442
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.11 E-value=4.7e+02 Score=23.26 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQK 226 (644)
Q Consensus 195 ~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~ 226 (644)
.+..++..+..+-+.|.+++..++.++.+++.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444434444444444444444333
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.06 E-value=1.2e+03 Score=28.42 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=9.5
Q ss_pred cCCcHHHHHhhHHHHHHh
Q 006469 70 KASPEEKLSLFNSLLKGY 87 (644)
Q Consensus 70 k~~~~ekl~~~~~LLK~y 87 (644)
-.++.+...-+..+|+.+
T Consensus 419 GtDp~eg~ala~aile~l 436 (782)
T PRK00409 419 GTDPDEGAALAISILEYL 436 (782)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 355555555545556544
No 444
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.02 E-value=1.8e+02 Score=29.98 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006469 256 LMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (644)
Q Consensus 256 l~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l 327 (644)
|+.+.-....|+..++.+.++|++-|.++.+-. ++...+.++++.+.++..++..+
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~----------------d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAKTVE----------------DLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556688899999999998888765322 13333555555555555544444
No 445
>PHA01750 hypothetical protein
Probab=25.96 E-value=2.2e+02 Score=23.37 Aligned_cols=38 Identities=8% Similarity=0.289 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540 (644)
Q Consensus 503 ~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E 540 (644)
+.+-.||.+..|.++..+.++.-......+++.+++..
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44667788888888777777765555555555544443
No 446
>PRK14127 cell division protein GpsB; Provisional
Probab=25.76 E-value=1.5e+02 Score=26.80 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
|+.|..|++.....+..|..+|..|+.+|.......
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888888888888888888888888887766543
No 447
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.74 E-value=6.6e+02 Score=24.82 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=12.2
Q ss_pred cCChhHHHhhHhHHHHHH
Q 006469 30 DFDLEKEKSLLDELGLKI 47 (644)
Q Consensus 30 ~~dl~~lq~~LD~~~~ei 47 (644)
..|.-.|+..||..-...
T Consensus 32 R~dVi~L~e~Ld~~L~~~ 49 (189)
T PF10211_consen 32 RQDVIQLQEWLDKMLQQR 49 (189)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457777888888655543
No 448
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=25.64 E-value=4.6e+02 Score=28.37 Aligned_cols=80 Identities=11% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH------HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE------RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (644)
Q Consensus 208 ~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~------~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL 281 (644)
.+++.++..++..+..+++.+..++.++...+..++.. ......+++-...++.-++.++..++.+...++..+
T Consensus 95 ~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 174 (370)
T PRK11578 95 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASL 174 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhh
Q 006469 282 QSANDE 287 (644)
Q Consensus 282 ~~a~s~ 287 (644)
+.++..
T Consensus 175 ~~~~~~ 180 (370)
T PRK11578 175 DTAKTN 180 (370)
T ss_pred HHHHHH
No 449
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.56 E-value=1.7e+02 Score=30.95 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (644)
Q Consensus 508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs 560 (644)
.-|.=|++-|..-+.|+.++..+..+...||..+..|.. .|+||-.
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler-------EI~ylKq 283 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER-------EIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 346667888888889999999999999999999999999 9999854
No 450
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=25.19 E-value=6.9e+02 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHhHHHHHHHhhhhhhhHHHHHHHhhhhhcC
Q 006469 85 KGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115 (644)
Q Consensus 85 K~yQ~EID~LTkRsK~aE~aFl~~Y~~L~ea 115 (644)
|.|=.-|-+++..++..=.+|-++|.++...
T Consensus 26 k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~ 56 (216)
T cd07599 26 KAFRDSWRSILTHQIAFAKEFAELYDPIVGP 56 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC
Confidence 3455556666777777778899999877644
No 451
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=25.18 E-value=1.2e+02 Score=33.93 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=25.2
Q ss_pred HHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHH
Q 006469 104 AFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRT 151 (644)
Q Consensus 104 aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~ 151 (644)
.||+-|+.|.+-|-|..+ +.|..+..|...|++|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~l------------~fe~pi~ele~ki~el~~ 94 (431)
T PLN03230 59 KILNRFKPLKNKPKPVTL------------PFEKPIVDLENRIDEVRE 94 (431)
T ss_pred HHHHhcCCCCCCCCCCcc------------chhhHHHHHHHHHHHHHh
Confidence 489999999999998765 345555555555555544
No 452
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.94 E-value=7.6e+02 Score=25.31 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=77.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccc
Q 006469 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAG 483 (644)
Q Consensus 404 E~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~ 483 (644)
++.+..--+++-+-+...-.+++.-..+.+.+...+.+...++.+..+|+.+-+.....+....
T Consensus 32 D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqei---------------- 95 (246)
T KOG4657|consen 32 DSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEI---------------- 95 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 3333333444455555544477777777778888888888888888888877766666554321
Q ss_pred ccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhHhhHHHHh
Q 006469 484 GTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA-------ELEKTKADNVQLYGKIR 556 (644)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~-------E~~~Lk~DN~kLYEkir 556 (644)
.-.++..++.+.++.-|++++......|+..+. ..-.-+.|--..-|++.
T Consensus 96 -----------------------k~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~ 152 (246)
T KOG4657|consen 96 -----------------------KATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAAS 152 (246)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 112456778888889999998888888877663 22233556655556666
Q ss_pred hhhccc
Q 006469 557 FVQDYN 562 (644)
Q Consensus 557 ylqsy~ 562 (644)
|...|-
T Consensus 153 wy~dyL 158 (246)
T KOG4657|consen 153 WYNDYL 158 (246)
T ss_pred HHHHhc
Confidence 666664
No 453
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.83 E-value=3.1e+02 Score=23.77 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhc
Q 006469 335 MNEIKKLNALLIEKEAALEDMKKELQAR-PTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 335 ~~~~~~L~~~l~~~~~~~~~L~~~l~~~-~~~sDYeeiKrEL~iLk~I 381 (644)
+.+|..+++.+......++.++.+|... .+..+...+..|+..|+..
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~ 51 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEK 51 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHH
Confidence 4556666666666666677777777654 3355777777776666643
No 454
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.82 E-value=1.9e+02 Score=29.13 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
+.++.+..|..++|.||.+|+.++..+-..- .+|-.+|.++.-
T Consensus 40 ~avSL~erQ~~~LR~~~~~L~~~l~~Li~~A-----------r~Ne~~~~~~~~ 82 (225)
T PF04340_consen 40 GAVSLVERQLERLRERNRQLEEQLEELIENA-----------RENEAIFQRLHR 82 (225)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4899999999999999999999998876433 457777776655
No 455
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.79 E-value=1.6e+02 Score=26.24 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=32.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
....|++..+.-|=|+..++..|+.+++.|-..|+.
T Consensus 56 VsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~~ 91 (103)
T COG2960 56 VSREEFDVQRQVLLRTREKLAALEARIEELEARLAS 91 (103)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345788999999999999999999999999999973
No 456
>PRK00736 hypothetical protein; Provisional
Probab=24.78 E-value=3.1e+02 Score=22.50 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 420 ~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
.+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.65 E-value=98 Score=20.13 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 513 RDRFRARLRETEEEVRQL 530 (644)
Q Consensus 513 RDRfr~rn~ELE~el~~~ 530 (644)
.+|+|.||.+||.+|..-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478888899888888654
No 458
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.58 E-value=3.1e+02 Score=25.70 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki 555 (644)
+....+-..-+..-...|+.+++.--.+|..|+.++..+..-|.+|=+|+
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34455555667778889999999999999999999999999998886653
No 459
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.51 E-value=7.3e+02 Score=24.92 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006469 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242 (644)
Q Consensus 208 ~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~ 242 (644)
..|..++..+...+..|+..+...+.++.+++.+.
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555444443
No 460
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.37 E-value=1.3e+03 Score=27.64 Aligned_cols=195 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469 304 NSLSAKEKIISELNSELHNIETALSNEREQHM---NEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (644)
Q Consensus 304 ~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~---~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~ 380 (644)
.........|...+.++..|-+.+.....-.. ....-|.+++..+...+..|......+ ...+-+|..+++=|-.
T Consensus 61 ~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR--~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 61 ESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDER--RAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred cccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 006469 381 VGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN-EQQKLIQKLEDD 459 (644)
Q Consensus 381 IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~-~~~~li~kLE~D 459 (644)
+--|..+. ...-.....-+=+.+-..|+..|..|+.+...--..+..+...+..+-..|. .+...+..++.+
T Consensus 139 ~l~g~~~~-------~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~s 211 (660)
T KOG4302|consen 139 ELGGPEDL-------PSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPS 211 (660)
T ss_pred HhcCCccC-------CcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhh
Q ss_pred HHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 460 ILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA 539 (644)
Q Consensus 460 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~ 539 (644)
|........ -+|--.-.+|+..-+..|.++..+-.+.+..++.
T Consensus 212 L~~~~~~~~-------------------------------------~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~ 254 (660)
T KOG4302|consen 212 LVDHDGEQS-------------------------------------RSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRT 254 (660)
T ss_pred hhhccCccc-------------------------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh
Q 006469 540 ELEKT 544 (644)
Q Consensus 540 E~~~L 544 (644)
.+-.|
T Consensus 255 ~~~~L 259 (660)
T KOG4302|consen 255 KLLEL 259 (660)
T ss_pred HHHHH
No 461
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.35 E-value=3.8e+02 Score=22.23 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 419 t~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
..+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.89 E-value=62 Score=29.44 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=14.8
Q ss_pred hhHhhHhHHHHHHHHHHHHhHhhhhHHHH
Q 006469 135 LESENRKMKIELEEYRTEATHLKNQQSTI 163 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~lk~q~~~~ 163 (644)
+..++..|..++..|+.++..+..+...+
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44455566666666666666665555443
No 463
>PRK02119 hypothetical protein; Provisional
Probab=23.80 E-value=4.3e+02 Score=22.01 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhh
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiryl 558 (644)
+....+++..|+.=.|.-+..++..+...+.+++.|+.---.|+++++-+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666666666666777777777555555565554
No 464
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.66 E-value=5.3e+02 Score=28.96 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~L 544 (644)
...+..+++....+|..++..+..++..++.++...
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555556665555555555555555554
No 465
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.64 E-value=7.3e+02 Score=24.64 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
|+.+|..++..+...+..+|.++..++--|-.-|++++-
T Consensus 117 r~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~ 155 (203)
T KOG3433|consen 117 RTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVH 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 334444444444444555555555555555555554443
No 466
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.38 E-value=2.3e+02 Score=29.52 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHH
Q 006469 140 RKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLE 174 (644)
Q Consensus 140 ~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le 174 (644)
..+++++.+|+++++.++.+...++.++.+...|.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555554544444555444443
No 467
>PF14282 FlxA: FlxA-like protein
Probab=23.37 E-value=4.6e+02 Score=23.32 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006469 311 KIISELNSELHNIETALSNERE 332 (644)
Q Consensus 311 ~~i~~L~~e~~~L~~~l~~~r~ 332 (644)
..|..|...+..|...|..+..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555544443
No 468
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=23.34 E-value=5.9e+02 Score=23.48 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q 006469 103 NAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182 (644)
Q Consensus 103 ~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~ 182 (644)
..|+.+++.....|++.| ...-...+..+...+..++-.+
T Consensus 23 k~~~~~~~~~~~~~~~~~-----------------------------------~e~~~~~~e~~l~~l~~~e~~~----- 62 (139)
T PF05615_consen 23 KRFLKWCNLSDSILSGQP-----------------------------------SEESQFLYERLLKELAQFEFSI----- 62 (139)
T ss_pred HHHHHHHhhhcccccccc-----------------------------------chhHHHHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 006469 183 EIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE 244 (644)
Q Consensus 183 ~~v~~ke~el~~~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~ 244 (644)
.+-.-+.........+|..........+..++..+.+|+..+..++ .+...+..|+.
T Consensus 63 ----~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak-~~r~~k~eyd~ 119 (139)
T PF05615_consen 63 ----LKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK-RVRQNKEEYDA 119 (139)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
No 469
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=23.32 E-value=1.7e+02 Score=33.31 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhhHhhHHHHhhhhcccc
Q 006469 508 VICNQRDRFRARLRETEEEVRQLKEKIGV---------LTAELEKTKADNVQLYGKIRFVQDYNN 563 (644)
Q Consensus 508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~---------lr~E~~~Lk~DN~kLYEkirylqsy~~ 563 (644)
-..-|..=++.|+.+|++++....+.+.. ++.++..+...--.|.+++.+|+.+-.
T Consensus 160 p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~ 224 (475)
T PF10359_consen 160 PRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLE 224 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668888899999999999999998887 467788888888888889999999854
No 470
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.31 E-value=1.5e+03 Score=28.26 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 262 RAQTRLLSLQREKDLLRSQLQSAND 286 (644)
Q Consensus 262 ra~~R~~~lE~ene~Lr~eL~~a~s 286 (644)
--+.+...|....+.+....+....
T Consensus 777 ~~~~~~~~lk~a~~~~k~~a~~~~~ 801 (1072)
T KOG0979|consen 777 FLEAREDLLKTALEDKKKEAAEKRK 801 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444555566666666666655553
No 471
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=23.26 E-value=7.8e+02 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 517 RARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 517 r~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..|+.++|..++.+..+|...-.=|..|+.
T Consensus 135 ~~K~qemE~RIK~LhaqI~EKDAmIkVLQq 164 (205)
T PF12240_consen 135 NRKCQEMENRIKALHAQIAEKDAMIKVLQQ 164 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999888888888877
No 472
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=23.21 E-value=3.1e+02 Score=22.23 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=37.0
Q ss_pred HHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHH
Q 006469 35 KEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQE 89 (644)
Q Consensus 35 ~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~ 89 (644)
.+-......-.++...+...+..+..|+++.+.+-..+| .......+|.+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d---~~~~~~~~k~l~~ 64 (77)
T PF03993_consen 13 AFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED---WKEAAEEIKELQQ 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHH
Confidence 344555666677888888999999999999999998776 3333344444443
No 473
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.21 E-value=3.5e+02 Score=28.27 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006469 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREK 274 (644)
Q Consensus 195 ~~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~en 274 (644)
.+.+++..+..+-..|...+..++..+.+-...++....-..+... +++..........++..|+++=...|.+||++.
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~-~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~ 255 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSS-DDEESEESSEDSVDTDEDIRREEEEIRELERKK 255 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-cccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666666666655555422111111100 001111222334577888888888888888876
Q ss_pred HHH
Q 006469 275 DLL 277 (644)
Q Consensus 275 e~L 277 (644)
..|
T Consensus 256 ~~L 258 (259)
T PF08657_consen 256 REL 258 (259)
T ss_pred Hhc
Confidence 654
No 474
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=23.20 E-value=3.6e+02 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=21.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
..+++-...+++.|+..+..++...+..+..|....
T Consensus 140 ~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~ 175 (397)
T PRK15030 140 KQEYDQALADAQQANAAVTAAKAAVETARINLAYTK 175 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 455666666666666666666666666665555433
No 475
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.17 E-value=1.1e+03 Score=26.34 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=32.2
Q ss_pred HhhcCCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhh-------cCCCChHHHHHHH
Q 006469 67 DFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLY-------EAPDPYPALASIA 126 (644)
Q Consensus 67 ~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~-------eaPDP~PlLe~s~ 126 (644)
+.|--+|..-...+-|-+..++..+|.+..|-..+=..++..++.-. ..+.|...|+...
T Consensus 245 d~ra~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~ 311 (438)
T PRK00286 245 DLRAPTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQ 311 (438)
T ss_pred hccCCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 44445666666666666666666666666665554444443333221 1456666655533
No 476
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=23.10 E-value=6.3e+02 Score=23.65 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE 244 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~ 244 (644)
+|+.+...+..+++.|+..+...+.+++.++.+|+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555665566566666666665543
No 477
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.02 E-value=1.1e+03 Score=26.42 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=25.7
Q ss_pred HHhhhhhcCCCChHHHHHHHH-HHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469 107 NIYQKLYEAPDPYPALASIAE-QDLKLSELESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 107 ~~Y~~L~eaPDP~PlLe~s~~-~~~~~~~le~e~~~Lk~el~~l~~e~a~ 155 (644)
+.|+.-+...-....|.+..+ ..+++++.|-++..|++++..++++.-.
T Consensus 24 q~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 24 QCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333333334444333 2234456677777777777777766554
No 478
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.77 E-value=75 Score=23.69 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHH
Q 006469 404 ESLLLDKNRKMEHELTQLKVK 424 (644)
Q Consensus 404 E~lLl~kNrkL~~eLt~lR~~ 424 (644)
|+ |.+-||+|+.|+.+||..
T Consensus 15 e~-LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ES-LTEENRRLQKEVQELRAL 34 (44)
T ss_pred HH-HHHHHHHHHHHHHHHHhc
Confidence 55 889999999999999964
No 479
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.59 E-value=1.2e+03 Score=26.95 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHH
Q 006469 345 LIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQ 420 (644)
Q Consensus 345 l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~ 420 (644)
+..+..+...++.++.+. -.++++=|.||+.+|----|+| ...+.++.-...+|++.+|--..
T Consensus 423 i~~le~e~~~y~de~~ka-----qaevdrlLeilkeveneKnDkd--------kkiaeler~~kdqnkkvaNlkHk 485 (654)
T KOG4809|consen 423 IKQLEKEASYYRDECGKA-----QAEVDRLLEILKEVENEKNDKD--------KKIAELERHMKDQNKKVANLKHK 485 (654)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhcccc--------chhhhcCchhhhhhhHHhhHHHH
Confidence 344444555566665553 3567888999998864332221 12334555566777776654433
No 480
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.56 E-value=3.9e+02 Score=24.18 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
|=.|.++|...+.+|-.++..+++.+.++-.|-..|+=.|-+|-++.--
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4567899999999999999999999999999999999999999888765
No 481
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.56 E-value=94 Score=27.67 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=38.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+.|+..-...|..+..++..|+.++......+..++.++..|+.
T Consensus 34 EAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 34 EANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667778888999999999999999888888888888887
No 482
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=22.50 E-value=4.8e+02 Score=22.11 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=27.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ 450 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~ 450 (644)
|..+-..-+.||-.|.+-...+..++..+..--..++.+....+
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556778888888888888887766554444444444433
No 483
>PRK01203 prefoldin subunit alpha; Provisional
Probab=22.40 E-value=6.5e+02 Score=23.55 Aligned_cols=33 Identities=12% Similarity=0.384 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (644)
Q Consensus 512 QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~L 544 (644)
-.+.++.++.+|+.-+....+.+..+...++.|
T Consensus 88 kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 88 TIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544444443
No 484
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.36 E-value=8.1e+02 Score=24.68 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=19.0
Q ss_pred hhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH
Q 006469 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQM 177 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~ 177 (644)
|+.=|+.++.+.+.+++.- ..+|=.|+..+++....+
T Consensus 11 EIsLLKqQLke~q~E~~~K---~~Eiv~Lr~ql~e~~~~l 47 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQK---DSEIVSLRAQLRELRAEL 47 (202)
T ss_pred hHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHH
Confidence 4455555665555555541 234444555555554444
No 485
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.26 E-value=4.3e+02 Score=26.12 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 408 LDKNRKMEHELTQLKVKLSEKTSLLET-AEGKIAELTAKINEQQKLIQKLEDDILK 462 (644)
Q Consensus 408 l~kNrkL~~eLt~lR~~~~~l~~~l~~-l~~~~~~l~~el~~~~~li~kLE~DL~~ 462 (644)
...+..|..++..++...+.++.+.+. .+........++.-++..+..|...|..
T Consensus 133 ~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 133 EEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555555555444444433 2333334455577777777777776653
No 486
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=22.22 E-value=3.2e+02 Score=21.45 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006469 310 EKIISELNSELHNIETALSNER 331 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r 331 (644)
...|+.|+.||..|.+.|...+
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999887654
No 487
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=22.21 E-value=8.2e+02 Score=24.69 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=20.6
Q ss_pred HHHhHHHHHHHhhhhhhhHHHHHHHhhh
Q 006469 84 LKGYQEEVDNLTKRAKFGENAFLNIYQK 111 (644)
Q Consensus 84 LK~yQ~EID~LTkRsK~aE~aFl~~Y~~ 111 (644)
+|.|=.=|..++..++..=.++-.+|.+
T Consensus 35 ~K~Y~~av~~m~~~q~~~~e~l~~lY~p 62 (211)
T cd07588 35 LKNYLNSVRAMKQASKTLSETLKELYEP 62 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4567777777878877777777788864
No 488
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.00 E-value=1e+03 Score=25.79 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHH
Q 006469 434 TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQR 513 (644)
Q Consensus 434 ~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QR 513 (644)
++.++...+..+.+++++.....-..++ ...+...-..+..
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKle---------------------------------------el~~lQ~~C~ssI 41 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLE---------------------------------------ELSKLQDKCSSSI 41 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhhHhhHHHHhhhhcccccccccc-----CCCCccccccC
Q 006469 514 DRFRARLRETEEEVRQL--------KEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISR-----GSKKYAEDLES 580 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~--------~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy~~~~~~~~-----~~~~~~~~~~~ 580 (644)
++=+.|..+|...+.+. ...++.++.++...+. .+.-+++|-...++.- | +-|.+.+..
T Consensus 42 ~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~-------~l~DmEa~LPkkNGlyL~liLG-nVNVsll~k 113 (330)
T PF07851_consen 42 SHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC-------QLFDMEAFLPKKNGLYLRLILG-NVNVSLLSK 113 (330)
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh-------hHHHHHhhCCCCCCcccceecc-cccceeccc
Q ss_pred CCCchhhHHHHHHHHhh
Q 006469 581 GFTSDIESKYKKMYEDD 597 (644)
Q Consensus 581 ~~~~d~e~~Y~~~YE~~ 597 (644)
.+-. +|+.-||..
T Consensus 114 ~~kf----~yKdEYEkF 126 (330)
T PF07851_consen 114 QAKF----KYKDEYEKF 126 (330)
T ss_pred cccc----chhhhHHHH
No 489
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=21.94 E-value=3.6e+02 Score=20.48 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542 (644)
Q Consensus 507 ~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~ 542 (644)
|.+.+|.--|..-+.||.+.++++..++.-||+-|.
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~ 39 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999998664
No 490
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=21.72 E-value=74 Score=24.16 Aligned_cols=18 Identities=50% Similarity=0.837 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 514 DRFRARLRETEEEVRQLK 531 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~~ 531 (644)
|.+|.|+.|||+|++.++
T Consensus 14 e~l~vrv~eLEeEV~~Lr 31 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLR 31 (48)
T ss_pred chheeeHHHHHHHHHHHH
Confidence 456788888888776543
No 491
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.69 E-value=1.9e+02 Score=27.80 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=27.3
Q ss_pred HhhHhHHHHHHHHHHHHhHhhhhHH--HHHHHHHHHHHHHHHH
Q 006469 137 SENRKMKIELEEYRTEATHLKNQQS--TIRRLEERNRQLEQQM 177 (644)
Q Consensus 137 ~e~~~Lk~el~~l~~e~a~lk~q~~--~~~~Lke~~~~le~~~ 177 (644)
.+..+|+.|+.+++.|+..+..|+. .+-+|+-++.+++.++
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el 82 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEEL 82 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888776664 5666655555554444
No 492
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=21.59 E-value=7.7e+02 Score=27.87 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=52.4
Q ss_pred HhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhhhh---hhhHHHHHHHhhhhhcCCCC--hHHHHHHH
Q 006469 52 ENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRA---KFGENAFLNIYQKLYEAPDP--YPALASIA 126 (644)
Q Consensus 52 ~~s~~sRK~La~~Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTkRs---K~aE~aFl~~Y~~L~eaPDP--~PlLe~s~ 126 (644)
+.-..-|+.+..+-++|.----++++.-+.++++++- .||...+.. ..|-..+..-|..+. ..+. --+|..-+
T Consensus 322 ~~f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~-~id~vi~~ir~s~~ak~~L~~~l~~~~-~~~~qa~~IL~m~L 399 (445)
T cd00187 322 QEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAIL-NIDEVINLIRSSDEAKKALIEELEKLG-FSEIQADAILDMRL 399 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHhcC-CCHHHHHHHHHhHH
Confidence 4455677788888888876556667777777777654 566554444 333444444442211 1111 11333333
Q ss_pred HHHHhhhhhhHhhHhHHHHHHHHHHHHhHhh
Q 006469 127 EQDLKLSELESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 127 ~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk 157 (644)
.++.+ .+..+|+.|.++++++++.++
T Consensus 400 ~~LT~-----~e~~kL~~E~~~l~~ei~~l~ 425 (445)
T cd00187 400 RRLTK-----LEREKLLKELKELEAEIEDLE 425 (445)
T ss_pred HHhhh-----hHHHHHHHHHHHHHHHHHHHH
Confidence 33322 245566666666666666654
No 493
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=21.57 E-value=1.5e+02 Score=27.15 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=35.9
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhh
Q 006469 507 KVICNQRD--RFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (644)
Q Consensus 507 ~Ivt~QRD--Rfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiryl 558 (644)
.||.-|-+ -.+..+..|+..+..+..+++.++.|+..|-+ ||+|--+
T Consensus 54 ~ii~~q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss-----~eRIldi 102 (120)
T COG4839 54 SIISVQTKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSS-----PERILDI 102 (120)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhcc-----HHHHHHH
Confidence 34443333 35678899999999999999999999999988 6666443
No 494
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=21.55 E-value=1.6e+02 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=26.3
Q ss_pred hhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHH
Q 006469 33 LEKEKSLLDELGLKIAENQENSQKNRRKLAES 64 (644)
Q Consensus 33 l~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~ 64 (644)
|..||.+||+-.+|.-.-.+.-...|+.|+.-
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999988887777777777653
No 495
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.43 E-value=5.4e+02 Score=22.28 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 006469 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQR 272 (644)
Q Consensus 211 ~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ 272 (644)
+.+++..+.++...+..++.....|..-. -.++.+.....|+..|+..++.-...+..|-+
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~e-Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRE-LSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccC-CChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34555566666666666665555554322 12334555557777777755554444444433
No 496
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.41 E-value=4.3e+02 Score=21.09 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
++.+|..++..+..++..|..+|+.++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 497
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.34 E-value=1.8e+02 Score=24.36 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 252 Eleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
.+--+..++...++++..++.+|..|+.++....+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 344567778888999999999999999999876654
No 498
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.92 E-value=3.9e+02 Score=26.15 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (644)
Q Consensus 366 sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e 445 (644)
.++..++..++.++.. ........+....+.+.++..|+..++.++...+..++.++++...+..+
T Consensus 125 ~~l~~~~~~~~~~~kq--------------~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQ--------------AESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHH--------------HHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred H
Q 006469 446 I 446 (644)
Q Consensus 446 l 446 (644)
+
T Consensus 191 y 191 (192)
T PF05529_consen 191 Y 191 (192)
T ss_pred c
No 499
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.88 E-value=2.7e+02 Score=32.15 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kL 456 (644)
|..|-.+|++++++++..+++++..+.+-+.++..+..+++..+--...|
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
No 500
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.83 E-value=1.2e+03 Score=26.17 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (644)
Q Consensus 366 sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e 445 (644)
+.|+.+++|.+.=+.+ ...|-+-|+.. +..++..+++.+..+-.++-++
T Consensus 150 ~e~~~~~~e~~~Y~~~----------------------l~~Le~~~~~~---------~~~~~~~e~~~l~~eE~~L~q~ 198 (447)
T KOG2751|consen 150 KEVEDAEDEVDTYKAC----------------------LQRLEQQNQDV---------SEEDLLKELKNLKEEEERLLQQ 198 (447)
T ss_pred HHHHHHHHHHHHHHHH----------------------HHHHhhcCccc---------chHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 006469 446 INEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEE 525 (644)
Q Consensus 446 l~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~ 525 (644)
+.++.+....|-.+|.+.+.... .........-.----|+-.+.+.+.
T Consensus 199 lk~le~~~~~l~~~l~e~~~~~~--------------------------------~~~e~~~~~~~ey~~~~~q~~~~~d 246 (447)
T KOG2751|consen 199 LEELEKEEAELDHQLKELEFKAE--------------------------------RLNEEEDQYWREYNNFQRQLIEHQD 246 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHhhhcccc
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 006469 526 EVRQLKEKIGVLTAELEKTKADNV 549 (644)
Q Consensus 526 el~~~~~~i~~lr~E~~~Lk~DN~ 549 (644)
+++.+..++.--+..+++|++-||
T Consensus 247 el~Sle~q~~~s~~qldkL~ktNv 270 (447)
T KOG2751|consen 247 ELDSLEAQIEYSQAQLDKLRKTNV 270 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Done!