Query 006469
Match_columns 644
No_of_seqs 186 out of 317
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 01:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.3 1.7E-06 5.7E-11 105.9 11.4 19 138-156 858-876 (1184)
2 1i84_S Smooth muscle myosin he 98.2 4.3E-06 1.5E-10 102.3 11.0 22 135-156 862-883 (1184)
3 2v71_A Nuclear distribution pr 97.7 0.004 1.4E-07 59.8 19.6 88 196-283 33-127 (189)
4 3na7_A HP0958; flagellar bioge 97.2 0.11 3.8E-06 52.4 24.7 132 208-374 56-187 (256)
5 3swk_A Vimentin; cytoskeleton, 96.9 0.0064 2.2E-07 51.2 10.5 78 209-286 4-84 (86)
6 3na7_A HP0958; flagellar bioge 96.9 0.41 1.4E-05 48.2 25.9 38 517-557 149-186 (256)
7 3ol1_A Vimentin; structural ge 96.7 0.016 5.5E-07 51.8 12.1 79 208-286 23-104 (119)
8 2v71_A Nuclear distribution pr 96.7 0.4 1.4E-05 46.0 22.2 56 407-462 100-155 (189)
9 3vkg_A Dynein heavy chain, cyt 96.2 1.7 5.8E-05 57.8 30.7 84 249-336 2019-2102(3245)
10 3o0z_A RHO-associated protein 95.4 1.7 5.9E-05 40.7 21.1 75 209-287 38-112 (168)
11 1x79_B RAB GTPase binding effe 94.8 0.32 1.1E-05 42.7 11.3 66 215-280 41-106 (112)
12 3vkg_A Dynein heavy chain, cyt 94.5 15 0.0005 49.3 30.6 12 619-630 2606-2617(3245)
13 2dfs_A Myosin-5A; myosin-V, in 94.3 0.9 3.1E-05 54.9 17.7 36 250-285 969-1004(1080)
14 2dfs_A Myosin-5A; myosin-V, in 93.9 0.83 2.8E-05 55.2 16.6 34 407-440 1021-1054(1080)
15 4gkw_A Spindle assembly abnorm 93.7 3.6 0.00012 36.6 18.8 82 366-462 25-109 (167)
16 3o0z_A RHO-associated protein 92.6 6.7 0.00023 36.7 17.5 123 400-561 8-133 (168)
17 2v4h_A NF-kappa-B essential mo 92.5 2.5 8.7E-05 36.6 12.8 85 424-551 25-109 (110)
18 3ghg_A Fibrinogen alpha chain; 91.8 1.4 4.7E-05 48.0 12.6 52 415-466 108-160 (562)
19 2ocy_A RAB guanine nucleotide 91.6 3.1 0.00011 38.4 13.3 46 501-546 98-143 (154)
20 3s4r_A Vimentin; alpha-helix, 90.2 3 0.0001 35.3 10.8 33 144-179 9-41 (93)
21 2b9c_A Striated-muscle alpha t 90.2 8.3 0.00028 35.4 14.7 36 253-288 82-117 (147)
22 2v66_B Nuclear distribution pr 89.7 6.9 0.00024 34.2 12.9 71 206-283 4-74 (111)
23 1ik9_A DNA repair protein XRCC 89.2 5.1 0.00018 39.1 13.2 52 112-163 113-165 (213)
24 3ghg_A Fibrinogen alpha chain; 88.7 4.6 0.00016 44.1 13.4 24 363-386 173-196 (562)
25 3oja_B Anopheles plasmodium-re 88.0 12 0.00041 41.5 17.2 39 250-288 543-581 (597)
26 3tnu_B Keratin, type II cytosk 87.4 4.2 0.00014 36.4 10.5 36 511-546 75-110 (129)
27 2fxo_A Myosin heavy chain, car 87.3 16 0.00054 32.6 17.8 30 119-156 3-32 (129)
28 3tnu_A Keratin, type I cytoske 86.3 3.5 0.00012 37.0 9.4 76 429-546 37-112 (131)
29 3oja_B Anopheles plasmodium-re 86.3 6.5 0.00022 43.7 13.7 37 510-546 536-572 (597)
30 2efr_A General control protein 85.8 22 0.00075 32.9 21.4 32 201-232 66-97 (155)
31 3i00_A HIP-I, huntingtin-inter 84.8 6.8 0.00023 34.7 10.2 73 307-381 11-83 (120)
32 2eqb_B RAB guanine nucleotide 84.5 11 0.00039 31.9 10.9 29 501-529 66-94 (97)
33 2efr_A General control protein 84.0 26 0.0009 32.3 23.8 56 312-380 99-154 (155)
34 3jsv_C NF-kappa-B essential mo 84.0 12 0.00041 31.5 10.7 40 424-463 3-42 (94)
35 3q8t_A Beclin-1; autophagy, AT 83.6 19 0.00066 30.4 14.5 39 201-240 57-95 (96)
36 3tnu_B Keratin, type II cytosk 82.6 12 0.0004 33.4 11.1 65 401-465 60-124 (129)
37 1fxk_A Prefoldin; archaeal pro 82.5 20 0.00068 30.3 12.2 39 501-539 62-100 (107)
38 3tnu_A Keratin, type I cytoske 82.4 7.8 0.00027 34.7 9.9 45 316-360 57-101 (131)
39 3bas_A Myosin heavy chain, str 81.5 22 0.00075 29.6 11.7 27 202-228 60-86 (89)
40 1gk4_A Vimentin; intermediate 81.2 15 0.00051 30.3 10.4 50 313-362 3-52 (84)
41 3u1c_A Tropomyosin alpha-1 cha 81.0 25 0.00086 29.9 14.0 63 253-333 11-73 (101)
42 3w03_C DNA repair protein XRCC 78.8 2.6 8.9E-05 40.1 5.6 47 111-157 132-179 (184)
43 2fxo_A Myosin heavy chain, car 78.2 36 0.0012 30.2 16.9 52 407-458 74-125 (129)
44 1x8y_A Lamin A/C; structural p 77.8 7.5 0.00026 32.3 7.5 50 313-362 5-54 (86)
45 2zqm_A Prefoldin beta subunit 76.9 35 0.0012 29.2 14.0 39 501-539 67-105 (117)
46 3ol1_A Vimentin; structural ge 76.5 39 0.0013 29.6 13.0 39 138-179 21-59 (119)
47 3cvf_A Homer-3, homer protein 76.5 17 0.00058 29.7 9.0 39 510-548 40-78 (79)
48 3mq9_A Bone marrow stromal ant 76.4 65 0.0022 34.5 16.8 48 115-162 368-422 (471)
49 3mq9_A Bone marrow stromal ant 76.3 36 0.0012 36.5 14.8 29 518-546 443-471 (471)
50 3mov_A Lamin-B1; LMNB1, B-type 76.0 3.3 0.00011 35.2 4.9 58 310-369 11-68 (95)
51 1l8d_A DNA double-strand break 75.4 38 0.0013 28.9 12.4 38 505-542 65-102 (112)
52 1t2k_D Cyclic-AMP-dependent tr 73.6 9.9 0.00034 29.3 6.8 43 511-553 15-57 (61)
53 3swy_A Cyclic nucleotide-gated 73.1 12 0.00041 27.4 6.5 42 135-176 3-45 (46)
54 2e7s_A RAB guanine nucleotide 72.0 3.2 0.00011 37.4 4.0 46 501-546 86-131 (135)
55 2ocy_A RAB guanine nucleotide 71.2 64 0.0022 29.7 19.7 37 248-284 55-91 (154)
56 3q4f_C DNA repair protein XRCC 71.0 4.1 0.00014 38.4 4.6 44 111-154 141-185 (186)
57 1x79_B RAB GTPase binding effe 70.7 53 0.0018 28.6 12.2 42 196-237 36-77 (112)
58 1ic2_A Tropomyosin alpha chain 70.6 41 0.0014 27.3 10.8 60 253-330 8-67 (81)
59 1gk4_A Vimentin; intermediate 70.4 28 0.00097 28.5 9.3 66 400-465 10-75 (84)
60 3s4r_A Vimentin; alpha-helix, 70.4 47 0.0016 27.8 11.6 43 504-546 49-91 (93)
61 3mud_A DNA repair protein XRCC 70.3 9.6 0.00033 35.8 7.0 43 112-160 116-158 (175)
62 2k48_A Nucleoprotein; viral pr 70.3 7.7 0.00026 33.2 5.7 73 16-95 20-95 (107)
63 2v66_B Nuclear distribution pr 69.9 55 0.0019 28.4 13.9 44 202-245 46-89 (111)
64 4h22_A Leucine-rich repeat fli 69.7 14 0.00048 31.6 7.2 56 506-561 25-80 (103)
65 1x8y_A Lamin A/C; structural p 69.1 34 0.0012 28.2 9.5 64 401-464 13-76 (86)
66 3hnw_A Uncharacterized protein 68.7 21 0.00071 32.3 8.7 48 414-461 87-134 (138)
67 1m1j_C Fibrinogen gamma chain; 68.7 95 0.0033 33.1 15.3 56 404-460 80-135 (409)
68 1ic2_A Tropomyosin alpha chain 68.3 47 0.0016 27.0 11.1 20 254-273 51-70 (81)
69 3a7p_A Autophagy protein 16; c 67.7 75 0.0025 29.1 12.6 29 90-119 30-58 (152)
70 3hnw_A Uncharacterized protein 67.7 23 0.00078 32.1 8.8 45 416-460 82-126 (138)
71 1jnm_A Proto-oncogene C-JUN; B 67.7 11 0.00039 29.0 5.9 42 510-551 14-55 (62)
72 1deq_A Fibrinogen (alpha chain 67.3 1.3E+02 0.0043 31.6 16.2 21 364-384 177-197 (390)
73 3swf_A CGMP-gated cation chann 66.4 26 0.00088 28.2 7.7 46 134-179 4-50 (74)
74 1gd2_E Transcription factor PA 65.4 18 0.00062 28.9 6.7 43 513-555 24-66 (70)
75 2i1j_A Moesin; FERM, coiled-co 64.7 23 0.00078 39.7 10.0 23 407-429 509-531 (575)
76 3m91_A Proteasome-associated A 63.7 19 0.00066 26.9 6.1 43 503-545 8-50 (51)
77 1ci6_A Transcription factor AT 62.7 19 0.00064 28.0 6.3 39 510-548 15-53 (63)
78 1deq_A Fibrinogen (alpha chain 61.4 1.6E+02 0.0054 31.0 14.6 39 401-439 52-90 (390)
79 2zqm_A Prefoldin beta subunit 61.2 31 0.0011 29.6 8.3 45 508-555 67-111 (117)
80 2wt7_A Proto-oncogene protein 60.5 26 0.0009 27.1 6.8 40 512-551 17-56 (63)
81 3u59_A Tropomyosin beta chain; 60.3 77 0.0026 26.7 15.1 30 253-282 67-96 (101)
82 2eqb_B RAB guanine nucleotide 59.2 82 0.0028 26.7 13.1 20 264-283 75-94 (97)
83 4dk0_A Putative MACA; alpha-ha 58.7 40 0.0014 34.7 10.1 40 249-288 113-152 (369)
84 2lw1_A ABC transporter ATP-bin 58.4 77 0.0026 26.1 9.8 61 212-272 22-84 (89)
85 1m1j_A Fibrinogen alpha subuni 58.3 2E+02 0.0069 30.9 15.3 48 418-465 113-160 (491)
86 2yy0_A C-MYC-binding protein; 56.8 17 0.00057 27.4 4.8 35 249-283 17-51 (53)
87 4fi5_A Nucleoprotein; structur 56.6 41 0.0014 29.1 7.7 61 30-97 21-84 (113)
88 3mov_A Lamin-B1; LMNB1, B-type 56.0 72 0.0025 26.8 9.3 66 400-465 21-86 (95)
89 2dgc_A Protein (GCN4); basic d 55.8 23 0.00078 27.6 5.7 35 512-546 24-58 (63)
90 1go4_E MAD1 (mitotic arrest de 55.7 56 0.0019 27.9 8.4 69 259-328 13-92 (100)
91 3u1c_A Tropomyosin alpha-1 cha 55.6 95 0.0032 26.3 14.9 24 439-462 39-62 (101)
92 4gkw_A Spindle assembly abnorm 54.7 1.2E+02 0.004 27.0 19.4 65 301-385 102-166 (167)
93 1t6f_A Geminin; coiled-coil, c 54.0 20 0.00067 24.6 4.2 29 525-553 7-35 (37)
94 3he5_B Synzip2; heterodimeric 53.6 58 0.002 23.2 7.2 42 420-461 7-48 (52)
95 3jsv_C NF-kappa-B essential mo 52.3 79 0.0027 26.6 8.6 42 136-177 15-56 (94)
96 3fpp_A Macrolide-specific effl 50.9 38 0.0013 34.5 8.3 38 250-287 113-150 (341)
97 3oja_A Leucine-rich immune mol 50.8 2.5E+02 0.0087 29.8 17.0 23 310-332 441-463 (487)
98 3ghg_C Fibrinogen gamma chain; 50.7 1.8E+02 0.0061 31.0 13.3 57 404-460 79-135 (411)
99 2b9c_A Striated-muscle alpha t 50.7 90 0.0031 28.4 9.7 18 310-327 100-117 (147)
100 3u59_A Tropomyosin beta chain; 50.6 1.1E+02 0.0039 25.7 14.9 38 509-546 56-93 (101)
101 3mq7_A Bone marrow stromal ant 50.6 1.3E+02 0.0043 26.3 13.8 39 517-555 70-108 (121)
102 3mq7_A Bone marrow stromal ant 50.4 1.3E+02 0.0044 26.3 11.2 25 258-282 78-102 (121)
103 2jee_A YIIU; FTSZ, septum, coi 50.4 1E+02 0.0035 25.2 9.0 55 408-462 12-66 (81)
104 3m91_A Proteasome-associated A 50.2 65 0.0022 24.0 7.0 17 409-425 23-39 (51)
105 3cve_A Homer protein homolog 1 50.1 97 0.0033 24.8 10.8 39 510-548 34-72 (72)
106 2ke4_A CDC42-interacting prote 49.7 91 0.0031 26.4 8.9 56 65-121 5-60 (98)
107 3qh9_A Liprin-beta-2; coiled-c 49.4 84 0.0029 25.6 8.1 54 413-466 23-76 (81)
108 1zxa_A CGMP-dependent protein 49.3 27 0.00091 27.6 5.0 41 506-546 13-53 (67)
109 3nmd_A CGMP dependent protein 49.0 51 0.0017 26.4 6.6 42 505-546 27-68 (72)
110 1gu4_A CAAT/enhancer binding p 49.0 55 0.0019 26.6 7.1 39 508-546 26-64 (78)
111 2v4h_A NF-kappa-B essential mo 48.9 1.3E+02 0.0045 26.0 11.8 42 136-177 37-78 (110)
112 3trt_A Vimentin; cytoskeleton, 48.7 62 0.0021 25.7 7.5 20 501-520 6-25 (77)
113 2e7s_A RAB guanine nucleotide 47.9 32 0.0011 30.9 6.0 34 250-283 45-78 (135)
114 1a93_B MAX protein, coiled coi 47.6 26 0.00088 23.9 4.0 29 531-559 6-34 (34)
115 1lwu_C Fibrinogen gamma chain; 46.6 41 0.0014 34.8 7.5 54 408-461 4-57 (323)
116 2jee_A YIIU; FTSZ, septum, coi 46.4 1.2E+02 0.0041 24.8 11.2 32 428-459 11-42 (81)
117 1t2k_D Cyclic-AMP-dependent tr 46.4 35 0.0012 26.1 5.4 24 134-157 33-56 (61)
118 2xv5_A Lamin-A/C; structural p 46.3 93 0.0032 25.0 8.0 55 413-467 2-56 (74)
119 1go4_E MAD1 (mitotic arrest de 46.0 75 0.0026 27.1 7.7 60 501-560 16-96 (100)
120 2pnv_A Small conductance calci 46.0 42 0.0014 24.2 5.2 30 200-229 11-40 (43)
121 2ic9_A Nucleocapsid protein; h 45.8 78 0.0027 26.7 7.6 58 32-96 6-66 (96)
122 1jcd_A Major outer membrane li 45.7 86 0.0029 23.5 7.1 18 251-268 32-49 (52)
123 2w83_C C-JUN-amino-terminal ki 45.6 72 0.0025 25.7 7.0 56 400-456 8-63 (77)
124 1nkp_B MAX protein, MYC proto- 45.5 82 0.0028 25.4 7.8 57 96-155 12-72 (83)
125 1hjb_A Ccaat/enhancer binding 45.1 57 0.0019 27.1 6.7 38 509-546 27-64 (87)
126 3q8t_A Beclin-1; autophagy, AT 44.8 1.4E+02 0.0047 25.1 14.3 88 413-546 8-95 (96)
127 2oqq_A Transcription factor HY 43.9 68 0.0023 22.8 5.8 29 510-538 9-37 (42)
128 2k48_A Nucleoprotein; viral pr 43.9 1.3E+02 0.0043 25.8 8.7 18 209-226 86-103 (107)
129 3iox_A AGI/II, PA; alpha helix 43.9 3.4E+02 0.012 29.4 14.3 36 251-286 73-108 (497)
130 3swk_A Vimentin; cytoskeleton, 43.3 1.4E+02 0.0047 24.6 11.7 41 139-182 2-42 (86)
131 1hjb_A Ccaat/enhancer binding 43.1 31 0.0011 28.7 4.8 29 132-160 45-73 (87)
132 3cvf_A Homer-3, homer protein 43.0 1.3E+02 0.0046 24.4 9.9 24 260-283 8-31 (79)
133 3c3f_A Alpha/beta peptide with 42.1 34 0.0012 23.1 3.8 28 519-546 2-29 (34)
134 3he4_A Synzip6; heterodimeric 42.0 72 0.0025 23.0 5.8 25 413-437 21-45 (56)
135 1xaw_A Occludin; coiled-coil, 41.8 1.5E+02 0.0052 26.7 9.5 70 88-164 65-136 (140)
136 1kd8_B GABH BLL, GCN4 acid bas 41.7 34 0.0012 23.5 3.8 28 519-546 2-29 (36)
137 3nmd_A CGMP dependent protein 41.6 1.2E+02 0.004 24.3 7.7 38 428-465 31-68 (72)
138 2f1m_A Acriflavine resistance 41.6 1.1E+02 0.0036 30.0 9.6 72 213-285 61-132 (277)
139 1dh3_A Transcription factor CR 41.0 56 0.0019 24.6 5.6 33 514-546 18-50 (55)
140 2qyw_A Vesicle transport throu 40.9 1.2E+02 0.0042 25.6 8.5 58 306-363 17-76 (102)
141 3he4_A Synzip6; heterodimeric 39.4 72 0.0025 23.0 5.5 32 429-460 23-54 (56)
142 3he5_A Synzip1; heterodimeric 39.0 99 0.0034 21.7 6.0 19 413-431 7-25 (49)
143 2q6q_A Spindle POLE BODY compo 38.9 1.2E+02 0.0043 23.8 7.2 50 409-465 3-52 (74)
144 4emc_A Monopolin complex subun 38.8 95 0.0032 29.4 7.9 41 414-454 25-65 (190)
145 3i00_A HIP-I, huntingtin-inter 38.4 1.4E+02 0.0048 26.2 8.6 43 139-181 17-60 (120)
146 1f5n_A Interferon-induced guan 38.4 3.1E+02 0.011 30.5 13.7 13 165-177 505-517 (592)
147 1kd8_A GABH AIV, GCN4 acid bas 38.0 33 0.0011 23.6 3.3 28 519-546 2-29 (36)
148 2ke4_A CDC42-interacting prote 37.8 86 0.0029 26.5 6.9 65 265-329 15-87 (98)
149 3m48_A General control protein 37.6 37 0.0013 22.9 3.5 27 520-546 2-28 (33)
150 1fxk_C Protein (prefoldin); ar 36.7 2.1E+02 0.0073 24.9 13.4 45 501-545 85-129 (133)
151 2ic6_A Nucleocapsid protein; h 36.7 1.1E+02 0.0036 24.9 6.8 56 32-94 6-64 (78)
152 3lay_A Zinc resistance-associa 36.5 1.2E+02 0.0039 28.5 8.3 68 73-153 69-136 (175)
153 2wq1_A General control protein 36.0 48 0.0017 22.3 3.8 27 520-546 2-28 (33)
154 1jnm_A Proto-oncogene C-JUN; B 35.8 44 0.0015 25.7 4.4 24 134-157 33-56 (62)
155 3swy_A Cyclic nucleotide-gated 35.2 1.3E+02 0.0044 21.9 7.2 33 311-343 5-37 (46)
156 3uul_A Utrophin; spectrin repe 35.1 1.9E+02 0.0065 23.8 14.1 21 84-104 4-24 (118)
157 3c3g_A Alpha/beta peptide with 35.0 51 0.0018 22.2 3.8 27 520-546 2-28 (33)
158 2oqq_A Transcription factor HY 34.9 1.1E+02 0.0037 21.8 5.7 33 514-546 6-38 (42)
159 2bni_A General control protein 34.9 53 0.0018 22.3 3.9 28 519-546 2-29 (34)
160 2oxj_A Hybrid alpha/beta pepti 34.5 52 0.0018 22.3 3.8 28 519-546 2-29 (34)
161 1vcs_A Vesicle transport throu 34.3 93 0.0032 26.3 6.7 70 310-379 11-94 (102)
162 1l8d_A DNA double-strand break 34.3 2.1E+02 0.0071 24.1 13.4 34 249-282 69-102 (112)
163 1deb_A APC protein, adenomatou 33.5 1.4E+02 0.0049 22.0 7.3 46 508-560 7-52 (54)
164 3a7p_A Autophagy protein 16; c 32.9 2E+02 0.0067 26.3 8.8 56 407-462 80-135 (152)
165 2oto_A M protein; helical coil 32.6 2.8E+02 0.0095 25.0 18.5 21 136-156 28-48 (155)
166 1gu4_A CAAT/enhancer binding p 32.5 75 0.0026 25.8 5.4 31 516-546 41-71 (78)
167 4emc_A Monopolin complex subun 32.3 1E+02 0.0034 29.2 7.0 52 304-359 13-64 (190)
168 1s1c_X RHO-associated, coiled- 32.0 1.6E+02 0.0054 23.5 7.0 48 412-461 2-49 (71)
169 3swf_A CGMP-gated cation chann 31.1 2E+02 0.0069 23.0 7.5 32 310-341 6-37 (74)
170 2w83_C C-JUN-amino-terminal ki 31.1 2.1E+02 0.0071 23.1 8.1 42 420-461 34-75 (77)
171 3oja_A Leucine-rich immune mol 30.9 5E+02 0.017 27.4 16.4 29 251-279 456-484 (487)
172 3trt_A Vimentin; cytoskeleton, 30.3 1.5E+02 0.0051 23.4 7.0 43 421-463 33-75 (77)
173 1wt6_A Myotonin-protein kinase 30.3 1.7E+02 0.0059 23.8 7.1 36 413-448 28-63 (81)
174 2q6q_A Spindle POLE BODY compo 30.0 2E+02 0.0069 22.6 8.7 58 301-362 7-64 (74)
175 3ra3_B P2F; coiled coil domain 29.9 84 0.0029 19.7 4.0 23 515-537 4-26 (28)
176 2w6a_A ARF GTPase-activating p 29.8 1.1E+02 0.0039 23.3 5.5 32 513-544 29-60 (63)
177 2hy6_A General control protein 29.7 73 0.0025 21.6 3.9 28 519-546 2-29 (34)
178 1jcd_A Major outer membrane li 29.6 86 0.003 23.4 4.9 28 519-546 5-32 (52)
179 1uo4_A General control protein 29.6 73 0.0025 21.6 3.9 28 519-546 2-29 (34)
180 1deb_A APC protein, adenomatou 29.5 1.7E+02 0.0059 21.6 7.1 42 415-456 9-50 (54)
181 2no2_A HIP-I, huntingtin-inter 29.2 2.7E+02 0.0092 23.8 13.2 37 407-443 6-42 (107)
182 4dzn_A Coiled-coil peptide CC- 29.1 1.1E+02 0.0039 19.8 4.6 27 520-546 4-30 (33)
183 1gd2_E Transcription factor PA 29.0 1.6E+02 0.0056 23.2 6.7 40 337-378 30-69 (70)
184 2akf_A Coronin-1A; coiled coil 28.6 81 0.0028 20.6 3.9 25 522-546 3-27 (32)
185 1uii_A Geminin; human, DNA rep 27.9 1.9E+02 0.0064 23.7 7.0 56 501-559 25-80 (83)
186 1wlq_A Geminin; coiled-coil; 2 27.1 1.9E+02 0.0065 23.7 6.8 55 503-560 19-76 (83)
187 3qh9_A Liprin-beta-2; coiled-c 26.8 2.6E+02 0.0088 22.8 8.7 53 304-360 26-78 (81)
188 4h22_A Leucine-rich repeat fli 26.8 2.4E+02 0.0082 24.1 7.7 13 367-379 59-71 (103)
189 3m9b_A Proteasome-associated A 25.9 74 0.0025 31.6 5.1 43 504-546 54-96 (251)
190 4etp_A Kinesin-like protein KA 25.8 1.5E+02 0.0051 31.4 8.0 53 413-465 7-59 (403)
191 3efg_A Protein SLYX homolog; x 25.3 1.9E+02 0.0066 23.2 6.7 49 511-559 14-62 (78)
192 2zxx_A Geminin; coiled-coil, c 25.2 2E+02 0.007 23.3 6.7 50 504-556 16-65 (79)
193 3efg_A Protein SLYX homolog; x 24.8 2E+02 0.0069 23.1 6.7 42 424-465 15-56 (78)
194 3iv1_A Tumor susceptibility ge 24.7 2.8E+02 0.0096 22.4 9.2 63 402-464 11-73 (78)
195 3e98_A GAF domain of unknown f 24.6 99 0.0034 30.6 5.9 43 504-557 65-107 (252)
196 1uix_A RHO-associated kinase; 24.5 2.7E+02 0.0091 22.2 7.9 47 414-460 2-48 (71)
197 2j5u_A MREC protein; bacterial 24.4 49 0.0017 32.9 3.6 33 134-166 23-55 (255)
198 3m48_A General control protein 24.4 80 0.0027 21.3 3.4 24 134-157 4-27 (33)
199 1m1j_B Fibrinogen beta chain; 24.3 6.9E+02 0.024 26.9 16.6 30 251-280 168-197 (464)
200 3u06_A Protein claret segregat 24.3 1.7E+02 0.0059 31.0 8.1 54 412-465 6-59 (412)
201 3he5_B Synzip2; heterodimeric 24.2 1.9E+02 0.0067 20.5 6.3 40 413-452 7-46 (52)
202 3ra3_A P1C; coiled coil domain 24.1 1.1E+02 0.0038 19.2 3.7 23 523-545 5-27 (28)
203 4dk0_A Putative MACA; alpha-ha 23.8 2.9E+02 0.0099 28.0 9.7 43 245-287 116-158 (369)
204 2ic6_A Nucleocapsid protein; h 23.8 2.9E+02 0.0099 22.3 8.5 17 209-225 56-72 (78)
205 4fi5_A Nucleoprotein; structur 23.1 3.6E+02 0.012 23.3 8.1 18 209-226 73-90 (113)
206 3vmx_A Voltage-gated hydrogen 22.3 2.4E+02 0.0081 20.7 6.9 38 416-453 4-41 (48)
207 3htk_A Structural maintenance 22.3 2.4E+02 0.0083 20.9 8.0 49 413-461 9-57 (60)
208 1gmj_A ATPase inhibitor; coile 22.2 2.9E+02 0.01 22.6 7.1 43 510-559 36-78 (84)
209 1gk6_A Vimentin; intermediate 22.1 2.3E+02 0.0078 21.4 6.2 45 420-464 4-48 (59)
210 1fxk_C Protein (prefoldin); ar 21.3 4E+02 0.014 23.0 11.4 15 366-380 32-46 (133)
211 2no2_A HIP-I, huntingtin-inter 21.0 3.9E+02 0.013 22.8 14.2 41 424-464 2-42 (107)
212 2r2v_A GCN4 leucine zipper; co 20.9 1.3E+02 0.0044 20.4 3.8 28 519-546 2-29 (34)
213 2pnv_A Small conductance calci 20.9 1.9E+02 0.0064 20.7 5.0 23 421-443 14-36 (43)
214 3he5_A Synzip1; heterodimeric 20.6 1.8E+02 0.0062 20.4 4.7 32 529-560 7-38 (49)
215 1nkp_B MAX protein, MYC proto- 20.4 1.8E+02 0.0063 23.2 5.8 44 501-544 37-80 (83)
216 2ic9_A Nucleocapsid protein; h 20.1 3.9E+02 0.013 22.4 8.3 18 209-226 56-73 (96)
217 3bas_A Myosin heavy chain, str 20.0 3.6E+02 0.012 22.0 10.7 29 119-155 4-32 (89)
218 1ezj_A Nucleocapsid phosphopro 20.0 97 0.0033 26.2 3.9 30 74-114 65-94 (115)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.30 E-value=1.7e-06 Score=105.87 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=9.1
Q ss_pred hhHhHHHHHHHHHHHHhHh
Q 006469 138 ENRKMKIELEEYRTEATHL 156 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~l 156 (644)
++..|+.++.+++..+..+
T Consensus 858 El~~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKA 876 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555544444443
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.16 E-value=4.3e-06 Score=102.27 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=10.6
Q ss_pred hhHhhHhHHHHHHHHHHHHhHh
Q 006469 135 LESENRKMKIELEEYRTEATHL 156 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~l 156 (644)
++.++..++..+..++..+.++
T Consensus 862 L~~eL~el~~~L~~le~~l~el 883 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKEL 883 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444443
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.67 E-value=0.004 Score=59.78 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-------HHhhHHhHHHHHHHHHHHHHHHH
Q 006469 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-------RVAKQSEVNLLMDEVERAQTRLL 268 (644)
Q Consensus 196 ~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~-------~~a~~aEleml~~dLEra~~R~~ 268 (644)
+++-+..-.+-|..|...|..+++.++.|+..+.....++..|+.++... ......|+..+....+....++-
T Consensus 33 l~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 33 LVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667778888888888888888888888888888888887655 33456777777777777788888
Q ss_pred HHHHHHHHHHHHHHh
Q 006469 269 SLQREKDLLRSQLQS 283 (644)
Q Consensus 269 ~lE~ene~Lr~eL~~ 283 (644)
.||..|+.|-...-.
T Consensus 113 eLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 113 ELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 888887777665443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.20 E-value=0.11 Score=52.42 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 208 ~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
.++..++..++..+..++...+..+.++...+ ..-|+..+..+++.+..++..+|.+.-.+-.++...
T Consensus 56 ~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---------~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~--- 123 (256)
T 3na7_A 56 LALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---------SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK--- 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34555666667777777777776666664432 234566666666666667777776666555554332
Q ss_pred cCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 006469 288 AGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367 (644)
Q Consensus 288 ~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sD 367 (644)
...+..+...+..+...+...+......+..++..+..+......+...+.. +-..-
T Consensus 124 ----------------------~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~-~lL~~ 180 (256)
T 3na7_A 124 ----------------------SEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP-KIYSF 180 (256)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHH
Confidence 2223334444444444444444444445555554444444444444433321 11357
Q ss_pred HHHHHHH
Q 006469 368 VDDLRKK 374 (644)
Q Consensus 368 YeeiKrE 374 (644)
|+-|++-
T Consensus 181 Yerir~~ 187 (256)
T 3na7_A 181 YERIRRW 187 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887764
No 5
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=96.95 E-value=0.0064 Score=51.23 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
+|+.|+..+......+...++.++..+.+++.+|+.+ ++...+++..+..|++.|..--.+||++++.|+++|...+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888888999999999999999988 5667789999999999999999999999999999998765
Q ss_pred h
Q 006469 286 D 286 (644)
Q Consensus 286 s 286 (644)
.
T Consensus 84 k 84 (86)
T 3swk_A 84 K 84 (86)
T ss_dssp T
T ss_pred h
Confidence 3
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.92 E-value=0.41 Score=48.15 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 517 r~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
...+.+++.++.........+.. .+-.+=+..|++||-
T Consensus 149 ~~~~~e~~~e~~~l~~~r~~l~~---~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 149 ENEVKNIKETQQIIFKKKEDLVE---KTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Confidence 33444444444444444444433 455688899999995
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.74 E-value=0.016 Score=51.77 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 208 ~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~---~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
.+|+++|..+......|...++.++..+.+++.+|+.+ .....+++..+..|++.+...-.+||.+++.|+++|...
T Consensus 23 ~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888999999999999887 455668889999999999999999999999999999875
Q ss_pred hh
Q 006469 285 ND 286 (644)
Q Consensus 285 ~s 286 (644)
+.
T Consensus 103 Kk 104 (119)
T 3ol1_A 103 KK 104 (119)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.71 E-value=0.4 Score=45.97 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=41.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~ 462 (644)
|...+..|...|..|...+++++.........+..+...+...=.-|+-||.+|..
T Consensus 100 l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 100 TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777777777777777777764
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.21 E-value=1.7 Score=57.80 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=45.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~ 328 (644)
..+++...+..|..++..+.+++.+.+.|+.+++.+........ ......+..+...++-|.-|.+|..|+..+..
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~----~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK----TESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 34555566666666666666666666666666665544321000 00001223344445557777777777777776
Q ss_pred HHHHHHHH
Q 006469 329 NEREQHMN 336 (644)
Q Consensus 329 ~~r~~~~~ 336 (644)
........
T Consensus 2095 ~l~~~~~~ 2102 (3245)
T 3vkg_A 2095 NFNTQMST 2102 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66554433
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.43 E-value=1.7 Score=40.66 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
++...+..++..+.+|+..+...+..-..+ +.+.....+.++--.++.-.+..++.+++.++..|..+|...+..
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~L----eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQT----DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333322222 223334444455555555566666677777777777776654443
No 11
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=94.77 E-value=0.32 Score=42.66 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (644)
Q Consensus 215 ~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~e 280 (644)
+....++.+|......++..|.+++..+.+-..+...+|.-|+.+-++...++..|+++|+.|.+.
T Consensus 41 E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 41 EDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 334445555555555555555566555555666678899999999999999999999999999865
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.47 E-value=15 Score=49.27 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=6.5
Q ss_pred hhhHHHhhhhhh
Q 006469 619 RDRITLSSGRFL 630 (644)
Q Consensus 619 ~er~~l~~~r~v 630 (644)
+||++..+.+||
T Consensus 2606 pDr~~~a~~~fV 2617 (3245)
T 3vkg_A 2606 SDRVLQYSHSFV 2617 (3245)
T ss_dssp GGGHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 355555555554
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.25 E-value=0.9 Score=54.86 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
.++++.+..+++.+..++..++.+++.|+.++..+.
T Consensus 969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666655543
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.95 E-value=0.83 Score=55.15 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=25.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA 440 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~ 440 (644)
|.++...|+++++.||.+.++++..+...+++..
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888888888888888877766665543
No 15
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=93.66 E-value=3.6 Score=36.57 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhhcchhhhchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (644)
Q Consensus 366 sDYeeiKrEL~iLk~IEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~e 445 (644)
.+.++++-||+|.=.+ ......++++ |.-||--.+.+|..||..+..++..++..+..+..-..+
T Consensus 25 ~eleEnqeEL~iVgkM--------------L~EEqgKVDQ-lqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q 89 (167)
T 4gkw_A 25 KQLEENQEELEIVGNM--------------LREEQGKVDQ-LQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ 89 (167)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHhhHHH-HHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence 4567777777776554 1233457788 889999999999999999999999999988888776665
Q ss_pred HHHHHHHHH---HHHHHHHh
Q 006469 446 INEQQKLIQ---KLEDDILK 462 (644)
Q Consensus 446 l~~~~~li~---kLE~DL~~ 462 (644)
-..+.--+. .||.||-.
T Consensus 90 QnQQSlDiRKLrELEADLKE 109 (167)
T 4gkw_A 90 QNQQSLDMRKLGELEADLKE 109 (167)
T ss_dssp HHHHHHHHHHTHHHHHTHHH
T ss_pred HhHhhhhHHHHHHHHhHHhh
Confidence 555544443 46777753
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.60 E-value=6.7 Score=36.69 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=87.4
Q ss_pred hchhHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 006469 400 MSKMESLLLDKNRKMEHE---LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDD 476 (644)
Q Consensus 400 ~~~LE~lLl~kNrkL~~e---Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~ 476 (644)
...||.-|.+-|.+|..+ -+.+|.++.++...+..+......+...+..+..--..|+.++..++.
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa----------- 76 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA----------- 76 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345677777777777654 456777777777777777777777777777777777777777776653
Q ss_pred CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHh
Q 006469 477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIR 556 (644)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkir 556 (644)
.|.--..-|.+--..+.+|+..+..+...+..++.-...+..||-+|-|+|-
T Consensus 77 ----------------------------~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 77 ----------------------------ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666777788888888888888888888888888888888887
Q ss_pred hhhcc
Q 006469 557 FVQDY 561 (644)
Q Consensus 557 ylqsy 561 (644)
-|+-.
T Consensus 129 ~lEKe 133 (168)
T 3o0z_A 129 HSEKE 133 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.55 E-value=2.5 Score=36.60 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcch
Q 006469 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQS 503 (644)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (644)
+++.|..++..+++.+.....++.+++..+.++..++++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~----------------------------------------- 63 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----------------------------------------- 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 455566666666666666777777777777777776643
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 006469 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL 551 (644)
Q Consensus 504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kL 551 (644)
+|++..|-|=|+.--.--...--+...++..|..++..|+..|-+|
T Consensus 64 --I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 64 --VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 5667777777776666666666666677777777777777755443
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.76 E-value=1.4 Score=48.02 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=40.0
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 415 EHELT-QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 415 ~~eLt-~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
-++++ +||..+..|+.++...-..+..|+.-|++|...|++||.||......
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555 77777777777777777788888888888888888999988866543
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.65 E-value=3.1 Score=38.44 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+.|+.--...|..+..||..|+.++......+..++.++..||.
T Consensus 98 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 98 EANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777778899999999999999999999999999999999987
No 20
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.19 E-value=3 Score=35.34 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006469 144 IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEE 179 (644)
Q Consensus 144 ~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~ 179 (644)
.++..|++.||.. ...++.|++..+.|+.++..
T Consensus 9 e~mq~LNdRlAsy---IdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 9 VELQELNDRFANL---IDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3567888888883 45788888888888777643
No 21
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=90.18 E-value=8.3 Score=35.37 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
+.++..||++|..|+..++..+..|..+|..+....
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998766654
No 22
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.72 E-value=6.9 Score=34.16 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 206 rE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
++++|..++..+...+..++..+...+.+. .........|+..++..-+.-..++-.||..|+.|-..--.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~-------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQS-------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 334455555555555555555444332111 12244567888888888888888999999998888766443
No 23
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=89.15 E-value=5.1 Score=39.08 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=33.3
Q ss_pred hhcCCCChHHHHHHHHHHHh-hhhhhHhhHhHHHHHHHHHHHHhHhhhhHHHH
Q 006469 112 LYEAPDPYPALASIAEQDLK-LSELESENRKMKIELEEYRTEATHLKNQQSTI 163 (644)
Q Consensus 112 L~eaPDP~PlLe~s~~~~~~-~~~le~e~~~Lk~el~~l~~e~a~lk~q~~~~ 163 (644)
|..+|||..++....+.... +..++.++..|..++.++..++.++..|+..+
T Consensus 113 L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 113 LEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678998875444444332 23556677777777777777777776555543
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.70 E-value=4.6 Score=44.07 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=19.3
Q ss_pred CChhhHHHHHHHHHHHHhcccCCc
Q 006469 363 PTSKMVDDLRKKVKILQAVGYNSI 386 (644)
Q Consensus 363 ~~~sDYeeiKrEL~iLk~IEf~~~ 386 (644)
.+..+|+.+.++|.-+-++.+-..
T Consensus 173 vd~~sY~~~QKQLeQv~a~dL~p~ 196 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVIAKDLLPS 196 (562)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCS
T ss_pred cchHHHHHHHHHHHHHhhcccCCc
Confidence 456799999999999988866543
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.99 E-value=12 Score=41.54 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
..|++.+...++..+.++.++.+++..++.++.+.....
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777788888888888888888888887766554
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.36 E-value=4.2 Score=36.41 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 511 ~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.+...+...+..||.++.+....+...-.|+..|-.
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888877777666665544
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.25 E-value=16 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHh
Q 006469 119 YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHL 156 (644)
Q Consensus 119 ~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~l 156 (644)
.|+|..+.. +.++.++..++..++..+...
T Consensus 3 KPLL~~~~~--------e~E~~~~~eel~~lke~l~k~ 32 (129)
T 2fxo_A 3 SPLLKSAER--------EKEMASMKEEFTRLKEALEKS 32 (129)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhh--------HHHHHHHHHHHHHHHHHHHHH
Confidence 588877644 335666666666666666543
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.29 E-value=3.5 Score=37.01 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHH
Q 006469 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKV 508 (644)
Q Consensus 429 ~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~I 508 (644)
..++..+...+..+..+++.++..+..||.-|..+....
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~----------------------------------------- 75 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY----------------------------------------- 75 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------------------------------
Confidence 344444444555555666666666777777766554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..++..+...+..||.++.+....+...-.|+..|-.
T Consensus 76 -~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 76 -CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888877777777665554
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.25 E-value=6.5 Score=43.72 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+.+.++.++.++|..+...+..+..+++|+..+++
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666
No 30
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.81 E-value=22 Score=32.86 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQ 232 (644)
Q Consensus 201 ~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q 232 (644)
..+.+++..+..++..+..++++.....+.+.
T Consensus 66 ekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE 97 (155)
T 2efr_A 66 EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555443
No 31
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.80 E-value=6.8 Score=34.71 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 006469 307 SAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (644)
Q Consensus 307 ~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~I 381 (644)
..++..|-.|..++.+|...+..........+.+|..++..+..+++.-....+.. ..|-+.|+.++..|+..
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a--~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQA--ADDCEFLRAELDELRRQ 83 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 45577799999999999999999888888888999988888888888777665544 46888999999988754
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.53 E-value=11 Score=31.93 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQ 529 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~ 529 (644)
..+.|+.--...|..+..||..|..+|..
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667776788889999999999988865
No 33
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.00 E-value=26 Score=32.30 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469 312 IISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (644)
Q Consensus 312 ~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~ 380 (644)
.|..|+.++.+|+..|...+..+......|...+..+ ..+ .+++..+..++.-||.
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el----~~~---------~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV----EEL---------LSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc---------ccchHHHHHHHHHhhc
Confidence 3555555556666566555555544444444333332 122 2466677777776664
No 34
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=83.97 E-value=12 Score=31.51 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
++..|...+...++-+......+.+++..+.+++.+++++
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i 42 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV 42 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888877644
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.60 E-value=19 Score=30.43 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240 (644)
Q Consensus 201 ~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~ 240 (644)
.-|.+. ..+..++-.....+..+.+.+..++.+|.-++.
T Consensus 57 ~~w~ey-n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 57 QYQREY-SEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335443 467778888899999999999999999887764
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.57 E-value=12 Score=33.38 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=57.2
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.+||..|.+-..+...++..++..+..++..+..+..++.....+++.+-..--.|+..|.+...
T Consensus 60 ~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 60 ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899989999999999999999999999999999999999999888888888888877653
No 37
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=82.49 E-value=20 Score=30.35 Aligned_cols=39 Identities=8% Similarity=0.218 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA 539 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~ 539 (644)
+.....|.|....+-...++..|+.++.....++..++.
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888887777777777777776666666555554
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.39 E-value=7.8 Score=34.69 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 316 LNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360 (644)
Q Consensus 316 L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~ 360 (644)
+.+.+..|+.++.........++..++..+..+..++..++....
T Consensus 57 l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 57 QLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444433
No 39
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.47 E-value=22 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 202 ILQEREQALQDQLRQAKDSVATMQKLH 228 (644)
Q Consensus 202 ~~~erE~~L~~ql~~ae~~l~~L~~~~ 228 (644)
...++-..|..+-..++.++.++...+
T Consensus 60 eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 60 QLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555566666666665544
No 40
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=81.25 E-value=15 Score=30.27 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR 362 (644)
Q Consensus 313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~ 362 (644)
|..+.+.+..|+.++.........++..++..+..+..++..++...+.+
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778887877777777777777777777666666666665554
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.01 E-value=25 Score=29.95 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE 332 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~ 332 (644)
|.++..|.|.|.-|+..++..+..+.....+ ++.++.+..+.|..++.++...+..|.....
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~------------------~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQ------------------LEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777666555544322 3333444455677777777766666655444
Q ss_pred H
Q 006469 333 Q 333 (644)
Q Consensus 333 ~ 333 (644)
.
T Consensus 73 k 73 (101)
T 3u1c_A 73 S 73 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=78.75 E-value=2.6 Score=40.12 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=32.7
Q ss_pred hhhcCCCChHHHHHHHHHH-HhhhhhhHhhHhHHHHHHHHHHHHhHhh
Q 006469 111 KLYEAPDPYPALASIAEQD-LKLSELESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 111 ~L~eaPDP~PlLe~s~~~~-~~~~~le~e~~~Lk~el~~l~~e~a~lk 157 (644)
.|..+|||.++....++-. ..+..|..+|..|+.+++.|..+..++.
T Consensus 132 ~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 132 NLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp ECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999776655533 3344567777777777777777777643
No 43
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=78.20 E-value=36 Score=30.17 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=31.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~ 458 (644)
|..+.-.|+..|..+...+.+.......+......+..++.+++.-+..+|.
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666666665555544
No 44
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=77.77 E-value=7.5 Score=32.29 Aligned_cols=50 Identities=26% Similarity=0.386 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR 362 (644)
Q Consensus 313 i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~ 362 (644)
|..|.+.+..|+.++.........++..++..+..+..++..++...+.+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666665555555566666666666655555555555443
No 45
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=76.90 E-value=35 Score=29.24 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=25.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA 539 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~ 539 (644)
+.....+.|....+.+..++..|+.++.....++..++.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777877777777766666666666665555554444
No 46
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.52 E-value=39 Score=29.62 Aligned_cols=39 Identities=15% Similarity=0.361 Sum_probs=16.2
Q ss_pred hhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006469 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEE 179 (644)
Q Consensus 138 e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~ 179 (644)
++..||.+|..+..+=+.+ ...++.++..+.++..++++
T Consensus 21 ~I~~LR~qid~~~~e~a~l---~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARV---EVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHH
Confidence 4444444444444443333 12333344444444444433
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.47 E-value=17 Score=29.72 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADN 548 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN 548 (644)
...|++++..+.-+-+.|..--..+..+|.-+.+|=.||
T Consensus 40 ~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~~~ 78 (79)
T 3cvf_A 40 RAERERARAEVGRAAQLLDVSLFELSELREGLARLAEAA 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccC
Confidence 345666666666666666666666666777666665554
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.37 E-value=65 Score=34.48 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHHHhh-------hhhhHhhHhHHHHHHHHHHHHhHhhhhHHH
Q 006469 115 APDPYPALASIAEQDLKL-------SELESENRKMKIELEEYRTEATHLKNQQST 162 (644)
Q Consensus 115 aPDP~PlLe~s~~~~~~~-------~~le~e~~~Lk~el~~l~~e~a~lk~q~~~ 162 (644)
--||..+|..+.+....+ .+...-..-|+++|+++++.|..+..|..+
T Consensus 368 ~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 368 RQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 346777776665544322 133444455777777777777777766654
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.29 E-value=36 Score=36.50 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 518 ARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 518 ~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.|+.|||.++..++.++..++.+|+.++.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 59999999999999999999999998863
No 50
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=75.98 E-value=3.3 Score=35.24 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 006469 310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYe 369 (644)
+.+|+.|...+..|+.++.........++..++..+..+..++..++.....+ ..+|.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~q--l~EYq 68 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQ--LNDYE 68 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 45677777777888888877777777777777777777777777777666654 24555
No 51
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.44 E-value=38 Score=28.92 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542 (644)
Q Consensus 505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~ 542 (644)
++.-+..+...++.++.+|..++......+..++.++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555544444
No 52
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.63 E-value=9.9 Score=29.28 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 006469 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (644)
Q Consensus 511 ~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYE 553 (644)
.=|+|-+.++.+|+.+...+......|+.+|..|+..+..|-.
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888889999999999999999999999999987666643
No 53
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=73.10 E-value=12 Score=27.43 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=33.5
Q ss_pred hhHhhHhHHHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHH
Q 006469 135 LESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQ 176 (644)
Q Consensus 135 le~e~~~Lk~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~ 176 (644)
+|.-+.+|...++-+++.|+.+-+.+. .-.+|+.|+-.+|.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677888888999999999887776 677888888887764
No 54
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.05 E-value=3.2 Score=37.44 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+.|+.--...|..+..||..|+.++......+..++.++..||.
T Consensus 86 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 86 EANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667889999999999999999999999999998888876
No 55
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.22 E-value=64 Score=29.69 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=23.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (644)
Q Consensus 248 a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a 284 (644)
....|+.-++.+|.....+-..+|.+...+..+|+..
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677666666666666666666666543
No 56
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=71.03 E-value=4.1 Score=38.37 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=31.7
Q ss_pred hhhcCCCChHHHHHHHHH-HHhhhhhhHhhHhHHHHHHHHHHHHh
Q 006469 111 KLYEAPDPYPALASIAEQ-DLKLSELESENRKMKIELEEYRTEAT 154 (644)
Q Consensus 111 ~L~eaPDP~PlLe~s~~~-~~~~~~le~e~~~Lk~el~~l~~e~a 154 (644)
.|..+|+|+++....++. +.++.+++.+|..|++|+++|..+..
T Consensus 141 ~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 141 NLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp ECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367899999977665553 23455778888888888888776643
No 57
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.75 E-value=53 Score=28.58 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFE 237 (644)
Q Consensus 196 ~~ek~~~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~ 237 (644)
|.++....+..-..|..++...+..|.+|+..+..++....+
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566678888888888888888887766655443
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.56 E-value=41 Score=27.27 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE 330 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~~ 330 (644)
|.++..|++.|..|+..++............ .+.++.+..+.|..|+.++...+..|...
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~------------------~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQ------------------LEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555544322 23334444555666666666666555433
No 59
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.38 E-value=28 Score=28.54 Aligned_cols=66 Identities=8% Similarity=0.093 Sum_probs=59.1
Q ss_pred hchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
..+||..|.+-...+..++..++..+..++..+..+..++.....+++.+-..--.|+..|.+...
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 357888899999999999999999999999999999999999999999998888899998887763
No 60
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.36 E-value=47 Score=27.83 Aligned_cols=43 Identities=5% Similarity=0.157 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.+-|+.......+|..+..+..+..++.-++..++.++..+|.
T Consensus 49 ~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 49 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666666666654
No 61
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=70.30 E-value=9.6 Score=35.84 Aligned_cols=43 Identities=12% Similarity=0.211 Sum_probs=30.8
Q ss_pred hhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhHhhhhH
Q 006469 112 LYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (644)
Q Consensus 112 L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~lk~q~ 160 (644)
|.+||+|+++.-..+.- .+..+.+|+.++++|++++...|.++
T Consensus 116 Lk~a~~paE~ireli~~------AertV~kLqkeiD~LEDeL~~eKek~ 158 (175)
T 3mud_A 116 LEKVENPAEVIRELICY------CLDTTAKNEKSIDDLEEKVAHAKEEN 158 (175)
T ss_dssp CEECSCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999976554442 34567788888888888887755333
No 62
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=70.29 E-value=7.7 Score=33.20 Aligned_cols=73 Identities=10% Similarity=0.065 Sum_probs=48.0
Q ss_pred CCCChHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHH---HHhhHHHHHHhHHHHH
Q 006469 16 SSSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEK---LSLFNSLLKGYQEEVD 92 (644)
Q Consensus 16 ~~~~~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ek---l~~~~~LLK~yQ~EID 92 (644)
|+.+-|-..+.-..--|+..||+++...=. .=..+|++|.+.++.|-+-||+-- +..=...+++||+-|.
T Consensus 20 ~~~~~~~~~~~~~tM~~ieeLQ~Ei~~~E~-------QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~Kia 92 (107)
T 2k48_A 20 STENLYFQGIDPFTMSTLQELQENITAHEQ-------QLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLG 92 (107)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhccccccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444444567788877665444 445789999999999999888732 3333456677777766
Q ss_pred HHh
Q 006469 93 NLT 95 (644)
Q Consensus 93 ~LT 95 (644)
-|-
T Consensus 93 eLK 95 (107)
T 2k48_A 93 ELK 95 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.90 E-value=55 Score=28.44 Aligned_cols=44 Identities=7% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 006469 202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE 245 (644)
Q Consensus 202 ~~~erE~~L~~ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~ 245 (644)
.+......|...+..++..+-+|..+.-++-.-|.|+..+|+..
T Consensus 46 ~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 46 QTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444556667777777777777777777777787888877755
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.72 E-value=14 Score=31.64 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhcc
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqsy 561 (644)
=.-+.=|.|-++..+.++++.+...+++...+.+++..++.....|...+.+|++-
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999998764
No 65
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=69.06 E-value=34 Score=28.22 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=57.4
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.+||..|.+-...+..++..++..+..++..+..+..++.....+++.+-..--.|+..|.+..
T Consensus 13 ~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 13 AAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4688888888889999999999999999999999999999999999999888888998887765
No 66
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.70 E-value=21 Score=32.34 Aligned_cols=48 Identities=33% Similarity=0.392 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 414 L~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
+..++..|+-.+..+..+++.+..++..+..++..++..+.+||..+.
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666677777777777777777776654
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.65 E-value=95 Score=33.09 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 404 E~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
+. ...+.+++..++..+...+......+..|+..+..+...++.++..+..|+..+
T Consensus 80 e~-~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 80 EQ-LTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hh-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44 377888999999999888888888888998888888888888888888887644
No 68
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=68.28 E-value=47 Score=26.96 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006469 254 NLLMDEVERAQTRLLSLQRE 273 (644)
Q Consensus 254 eml~~dLEra~~R~~~lE~e 273 (644)
..+..||+++..++..+...
T Consensus 51 q~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 51 KGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455544444444443
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=67.72 E-value=75 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=1.2
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhhhcCCCCh
Q 006469 90 EVDNLTKRAKFGENAFLNIYQKLYEAPDPY 119 (644)
Q Consensus 90 EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~ 119 (644)
-++.|+.|.. .|+-|-.+|+-.+-+|+|-
T Consensus 30 l~~rL~~Rd~-~E~~~~~l~~e~~~~~~~~ 58 (152)
T 3a7p_A 30 LIRRLTDRND-KEAHLNELFQDNSGAIGGN 58 (152)
T ss_dssp ----------------------------CH
T ss_pred HHHHHHHhhh-HHHHHHHHHHhhccCCCcc
Confidence 5667777764 6888888888888888774
No 70
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.69 E-value=23 Score=32.05 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 416 ~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
.++..+...+.++..++..++..+..+..++.+++..+..|+..+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=67.67 E-value=11 Score=29.05 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL 551 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kL 551 (644)
..=|+|-+.++.+|+.++..+......|+.++..|+..+..|
T Consensus 14 ~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 14 SKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888899999999999999999999999998855444
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.33 E-value=1.3e+02 Score=31.64 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=14.8
Q ss_pred ChhhHHHHHHHHHHHHhcccC
Q 006469 364 TSKMVDDLRKKVKILQAVGYN 384 (644)
Q Consensus 364 ~~sDYeeiKrEL~iLk~IEf~ 384 (644)
++.+|+++.+.|.=+.+|.+-
T Consensus 177 D~e~ye~qqKQL~qv~a~~ll 197 (390)
T 1deq_A 177 DLEDYKNQQKQLEQVIAINLL 197 (390)
T ss_pred cHHHHHHHHHHHHhhhhhccc
Confidence 357888888887777666554
No 73
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=66.40 E-value=26 Score=28.23 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=38.2
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHHHHH
Q 006469 134 ELESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEE 179 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~~e~ 179 (644)
++|.-+.+|...++-|++.|+.+-+.+. .-.+|++|+-.||.....
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677788888899999999999988887 778899999888887644
No 74
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.39 E-value=18 Score=28.86 Aligned_cols=43 Identities=28% Similarity=0.271 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (644)
Q Consensus 513 RDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki 555 (644)
|.|-...+.+||.++..+....+.+..|...|+..+..|-...
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888999999999998888888888888888777665443
No 75
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=64.75 E-value=23 Score=39.66 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=17.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKT 429 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~ 429 (644)
.++||++|+.+|..|+..++.+.
T Consensus 509 ~~ekn~~lq~qL~~L~~el~~~r 531 (575)
T 2i1j_A 509 LAERNERLHNQLKALKQDLARSC 531 (575)
T ss_dssp HHHHCHHHHHHHHHHHHHHHTTB
T ss_pred HHHhhHHHHHHHHHHHHHHHHHh
Confidence 67889999888887776665544
No 76
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=63.72 E-value=19 Score=26.88 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (644)
Q Consensus 503 ~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk 545 (644)
..-+--+..|-+.+-.+|..|.+-|.....+|..|+.+++.|-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445567889999999999999999999999999999998873
No 77
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.67 E-value=19 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADN 548 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN 548 (644)
+.=|.+-+.+..+|+.+...+......|+.+++.|+..+
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677888888888888888888888888888843
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.40 E-value=1.6e+02 Score=30.96 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=29.7
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKI 439 (644)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~ 439 (644)
.-|-.+|..-++.+...+..|+..+.++.........-+
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~ 90 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLT 90 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 457888999999999999999988888776655544433
No 79
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.20 E-value=31 Score=29.56 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (644)
Q Consensus 508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki 555 (644)
=+..=...+..+...++..+..+...+..++.++..++. +||+++
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~---~l~~~~ 111 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA---QIQSAL 111 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 355556778999999999999999999999999999998 677665
No 80
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.45 E-value=26 Score=27.11 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 006469 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL 551 (644)
Q Consensus 512 QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kL 551 (644)
=|.|-+..+.+|+.+...+......|+.+|..|+.....|
T Consensus 17 cR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 17 CRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777888888888888888888888888888844444
No 81
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=60.30 E-value=77 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 253 leml~~dLEra~~R~~~lE~ene~Lr~eL~ 282 (644)
+..+...|+-+...+..+|.++..|...|.
T Consensus 67 l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 67 VKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666667777777766654
No 82
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.16 E-value=82 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006469 264 QTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 264 ~~R~~~lE~ene~Lr~eL~~ 283 (644)
+..-..++.+|++|+.+|..
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44456789999999999864
No 83
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=58.75 E-value=40 Score=34.68 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=29.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~~ 288 (644)
...+++....++..++..+..++.+...++.+|..+....
T Consensus 113 s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 113 SLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457777777888888888888888888888877776553
No 84
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.36 E-value=77 Score=26.07 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 006469 212 DQLRQAKDSVATMQKLHELAQSQLFEVR--AQSDEERVAKQSEVNLLMDEVERAQTRLLSLQR 272 (644)
Q Consensus 212 ~ql~~ae~~l~~L~~~~e~~Q~~L~~~~--~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ 272 (644)
+.|+.++..|..|...+...+.+|.+.. .......+....+++-+..+|+.+-.|=.+|+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665543 222233555566666666666666666655543
No 85
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=58.33 E-value=2e+02 Score=30.90 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 418 LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 418 Lt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
...||..+..++..+..--..+..|+.-|..+...|++||.|+.....
T Consensus 113 S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 113 STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444456677777778888888888888876654
No 86
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.84 E-value=17 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
..++++.|..+++..+.++..|..+++.|+.+|.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999988753
No 87
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=56.57 E-value=41 Score=29.12 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=44.4
Q ss_pred cCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHH---HHhhHHHHHHhHHHHHHHhhh
Q 006469 30 DFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEK---LSLFNSLLKGYQEEVDNLTKR 97 (644)
Q Consensus 30 ~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ek---l~~~~~LLK~yQ~EID~LTkR 97 (644)
..|+..||.++...=..+ ..+|.+|.+.++.|-+-||+-- +..=...+++||+-|+-|-+.
T Consensus 21 ~~~ieeLq~Ei~~~E~QL-------~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrq 84 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQL-------VIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQ 84 (113)
T ss_dssp CCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999998877554444 4789999999999999988732 333345677777777766443
No 88
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=55.98 E-value=72 Score=26.83 Aligned_cols=66 Identities=8% Similarity=0.043 Sum_probs=57.6
Q ss_pred hchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
..+||..|.+-...+..++..+...+..++..+..+..++.....+++.+-...-.|+..|.+...
T Consensus 21 ~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 21 SRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999999999999999999999999999989998888888889888887653
No 89
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=55.76 E-value=23 Score=27.57 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 512 QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
-|.|-+.++.+|+.++..+......|..++..|+.
T Consensus 24 sR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 24 SRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677888888888888888888888877765
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.72 E-value=56 Score=27.88 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-----CCC------CCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006469 259 EVERAQTRLLSLQREKDLLRSQLQSANDEAG-----SRN------SDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (644)
Q Consensus 259 dLEra~~R~~~lE~ene~Lr~eL~~a~s~~~-----~~~------~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l 327 (644)
++.....++.+|+++++.|+.+++....... +.- ..-+..|+.-.+.. +....|..|..|+.+|...+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~-~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQ-RLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4555556666677777777776655443321 110 01122333333222 23567888888888777666
Q ss_pred H
Q 006469 328 S 328 (644)
Q Consensus 328 ~ 328 (644)
.
T Consensus 92 ~ 92 (100)
T 1go4_E 92 R 92 (100)
T ss_dssp T
T ss_pred H
Confidence 4
No 91
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.59 E-value=95 Score=26.28 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 439 IAELTAKINEQQKLIQKLEDDILK 462 (644)
Q Consensus 439 ~~~l~~el~~~~~li~kLE~DL~~ 462 (644)
...+..++..+..-|..||.||..
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443
No 92
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=54.74 E-value=1.2e+02 Score=27.04 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=39.7
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 006469 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (644)
Q Consensus 301 ~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iLk~ 380 (644)
.|++.|..|+..+.-|..-+--|...|+.++-.....+... ..|+ -+-+.||..|.+-+.
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSF-----------E~Lk---------vENE~vkerl~mYR~ 161 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSF-----------EKLS---------MENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH---------HHHHHHHHHHHHHTT
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHh---------hhhHhHHHHHHHHHH
Confidence 67788888888888777777776666655544433333222 1222 144667788888877
Q ss_pred cccCC
Q 006469 381 VGYNS 385 (644)
Q Consensus 381 IEf~~ 385 (644)
..|++
T Consensus 162 QRfsp 166 (167)
T 4gkw_A 162 QRFSP 166 (167)
T ss_dssp TTC--
T ss_pred hccCC
Confidence 77764
No 93
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=54.04 E-value=20 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 006469 525 EEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (644)
Q Consensus 525 ~el~~~~~~i~~lr~E~~~Lk~DN~kLYE 553 (644)
.+..++...|.....+|.+|+..|..|-|
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45667788888999999999999998876
No 94
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.58 E-value=58 Score=23.20 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 420 ~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
-||..+..+....-+++.+-..++.-+..++..|++||+.+.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555556666666777777778888887764
No 95
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=52.32 E-value=79 Score=26.56 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=24.7
Q ss_pred hHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH
Q 006469 136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQM 177 (644)
Q Consensus 136 e~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~ 177 (644)
+.-+......+++++.+++..+....+|.-|+..+.-++..+
T Consensus 15 EeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 15 EEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666555556666666665555544
No 96
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.94 E-value=38 Score=34.46 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
..+++-...++..++..+..++.+.+.++.+|..++..
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 150 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777777777777777777777777766654
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.85 E-value=2.5e+02 Score=29.83 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006469 310 EKIISELNSELHNIETALSNERE 332 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r~ 332 (644)
..+|.+|.+++.+++.-+.....
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhh
Confidence 33456666666665555544333
No 98
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=50.69 E-value=1.8e+02 Score=31.02 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 404 E~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
......+.+++-.++..+...+......+..|+..+......+..++..+..|+...
T Consensus 79 ~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 79 IDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345888888888888888888888888888888887777777777777777776643
No 99
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=50.68 E-value=90 Score=28.38 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 310 EKIISELNSELHNIETAL 327 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l 327 (644)
+..|.+|+.++..+-..+
T Consensus 100 E~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 100 EGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 100
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.62 E-value=1.1e+02 Score=25.69 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
+..+.|+...+..+....+..........-.++.+|..
T Consensus 56 lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 56 TEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555
No 101
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.62 E-value=1.3e+02 Score=26.28 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 006469 517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (644)
Q Consensus 517 r~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEki 555 (644)
..++.+|+.++..+++++...-.+++.|+++|.-|-=+|
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 346889999999999999999999999999876664444
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.39 E-value=1.3e+02 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 258 DEVERAQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 258 ~dLEra~~R~~~lE~ene~Lr~eL~ 282 (644)
.++...++.+..++.++|+||.+..
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3333344444444444444444443
No 103
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.35 E-value=1e+02 Score=25.18 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=23.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462 (644)
Q Consensus 408 l~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~ 462 (644)
-+|-..+=..++-|+-.+.+|+.+...+..+...+......+...|++|-.+...
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444433
No 104
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.23 E-value=65 Score=24.02 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=6.2
Q ss_pred HHhhhhhHHHHHHHHHH
Q 006469 409 DKNRKMEHELTQLKVKL 425 (644)
Q Consensus 409 ~kNrkL~~eLt~lR~~~ 425 (644)
.+|.+|..-|...|.++
T Consensus 23 ~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 23 ARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 105
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=50.06 E-value=97 Score=24.78 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADN 548 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN 548 (644)
...+++++..+.-+-+.|..--..+..++.-+.+|=.||
T Consensus 34 ~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~~~ 72 (72)
T 3cve_A 34 QSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLECS 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCC
Confidence 445666666666666666666666667777666665544
No 106
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=49.72 E-value=91 Score=26.39 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=45.5
Q ss_pred hHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHH
Q 006469 65 TRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPA 121 (644)
Q Consensus 65 Tk~Fkk~~~~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~Pl 121 (644)
+.+|.-|||+.+++.+..-|.-.+.+|..-++= +.+=.-..+||..=-...||..+
T Consensus 5 ~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~GD~~s~ 60 (98)
T 2ke4_A 5 TEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMGDPASL 60 (98)
T ss_dssp CSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGCCGGGS
T ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccCCHHHH
Confidence 357999999999999999999999999987654 55556678888887777788766
No 107
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.42 E-value=84 Score=25.62 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~ 466 (644)
.|-.|+..||....+++++--+.+..+..+..++..++.....-+..+..+++.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 577899999999999999999999999999999999888888888888777653
No 108
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=49.29 E-value=27 Score=27.64 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 506 L~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..-+......-..++.+||..+.....+|..|+.+++.+++
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455788999999999999999999998888877
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.00 E-value=51 Score=26.42 Aligned_cols=42 Identities=29% Similarity=0.279 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 505 iL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.|+--..+.-.-..++.+|+.++......|..|+.+++.+++
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444445567888888888888888888888888776
No 110
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.96 E-value=55 Score=26.57 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
-+..-|+.-+.+..+++.....+..+...|+.+|..|+.
T Consensus 26 AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888888888777
No 111
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.91 E-value=1.3e+02 Score=25.95 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=20.5
Q ss_pred hHhhHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH
Q 006469 136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQM 177 (644)
Q Consensus 136 e~e~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~ 177 (644)
|.-+.+...++++++.+++.......+|.=|+.++.-+...+
T Consensus 37 EeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 37 EEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554444445555555555444443
No 112
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.70 E-value=62 Score=25.73 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 006469 501 DQSSMLKVICNQRDRFRARL 520 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn 520 (644)
+.+++|.-|..|.|..-.+|
T Consensus 6 DL~~il~eiRaQYE~ia~kn 25 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKN 25 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 78888888888877644443
No 113
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.94 E-value=32 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 250 ~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
..|+.-+..+|...+.+-..+|.++..+..+|+.
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666655555555555555555555543
No 114
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=47.58 E-value=26 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHhhhh
Q 006469 531 KEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (644)
Q Consensus 531 ~~~i~~lr~E~~~Lk~DN~kLYEkirylq 559 (644)
.++..+.+.+|+-|+.-|..|=+.||.|+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 45677788888888888888888888763
No 115
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.63 E-value=41 Score=34.76 Aligned_cols=54 Identities=7% Similarity=-0.000 Sum_probs=41.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 408 l~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
..++.+|..++..+...+......+..|+..+..+...|++++..|..|+..+.
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777888888777778888888888888888888888888888887654
No 116
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.37 E-value=1.2e+02 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459 (644)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~li~kLE~D 459 (644)
|+.++..+-..+.-+.-++.+++..|..|..+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.36 E-value=35 Score=26.08 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=11.4
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhh
Q 006469 134 ELESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk 157 (644)
.++.++..|+.++..|..++..|+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 118
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=46.31 E-value=93 Score=24.95 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSK 467 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~ 467 (644)
.|..+...++..+..++..+..+..++.....+++.+-...-.|+..+.+...-.
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999999999888889999998887443
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.98 E-value=75 Score=27.07 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhhhhhHhhHHHHhhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQ---------------------LKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~---------------------~~~~i~~lr~E~~~Lk~DN~kLYEkirylq 559 (644)
.....+..+..-++|+|.++..||-+|-+ ...-....+.++..|+..+-+|=++++-|+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456677788888888888888888865 112223455666666666666666988887
Q ss_pred c
Q 006469 560 D 560 (644)
Q Consensus 560 s 560 (644)
.
T Consensus 96 e 96 (100)
T 1go4_E 96 R 96 (100)
T ss_dssp -
T ss_pred c
Confidence 5
No 120
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=45.97 E-value=42 Score=24.18 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 200 LEILQEREQALQDQLRQAKDSVATMQKLHE 229 (644)
Q Consensus 200 ~~~~~erE~~L~~ql~~ae~~l~~L~~~~e 229 (644)
..+|..+..+|++++..++.++..|+..+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999999988887654
No 121
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=45.81 E-value=78 Score=26.68 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=40.1
Q ss_pred ChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHH---HHhhHHHHHHhHHHHHHHhh
Q 006469 32 DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEK---LSLFNSLLKGYQEEVDNLTK 96 (644)
Q Consensus 32 dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ek---l~~~~~LLK~yQ~EID~LTk 96 (644)
|+..||.++.. ....=..+|.+|.+.++.|-+-||+-- +..=...+++||+-|.-|-+
T Consensus 6 ~i~eLq~e~~~-------~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr 66 (96)
T 2ic9_A 6 TLKEVQDNITL-------HEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKR 66 (96)
T ss_dssp THHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667766554 444455889999999999999988732 33334567777777776644
No 122
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=45.73 E-value=86 Score=23.46 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLL 268 (644)
Q Consensus 251 aEleml~~dLEra~~R~~ 268 (644)
.++.-...|..||++|+-
T Consensus 32 ~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 32 SDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 355566777888888874
No 123
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.56 E-value=72 Score=25.73 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=28.8
Q ss_pred hchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456 (644)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kL 456 (644)
++.+|.|+.+ |..|-.--..|.+-..+|-.+++.|..+...+..++.....-..++
T Consensus 8 gkevEnLi~E-N~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 8 GREVENLILE-NTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4567884443 4444433344555556666666666555555554444433333333
No 124
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.53 E-value=82 Score=25.44 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHHHhhhhhcCCCC----hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469 96 KRAKFGENAFLNIYQKLYEAPDP----YPALASIAEQDLKLSELESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 96 kRsK~aE~aFl~~Y~~L~eaPDP----~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~ 155 (644)
+|-...-.+|..+-..+-..|++ ..+|..|++.... |..++..|..+++.|..+...
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~---L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQY---MRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777776665444443 3367777765542 333444444444444444333
No 125
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=45.11 E-value=57 Score=27.08 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 509 vt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
+..-|+.-+.+..+++.....+..+...|+.+|..|+.
T Consensus 27 arrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777
No 126
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=44.75 E-value=1.4e+02 Score=25.05 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccc
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKAD 492 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (644)
.++.+|..+...-..+..++..+.++...+..++..++....+|...=..
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~------------------------------ 57 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ------------------------------ 57 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH------------------------------
Confidence 35556666666666666666666666666666666655555555443222
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 493 KKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 493 ~~~~~~~~~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.-..+--|+....++..++..+..++.-.++.++.|++
T Consensus 58 ----------------~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 58 ----------------YQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23345667788888888888888888888888888775
No 127
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.94 E-value=68 Score=22.83 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLT 538 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr 538 (644)
......+..+|.|||+.++-+.++-..||
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444444444444444333333
No 128
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=43.92 E-value=1.3e+02 Score=25.80 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 209 ALQDQLRQAKDSVATMQK 226 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~ 226 (644)
.|+.++.++++.+.++.+
T Consensus 86 alq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 86 TLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 129
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=43.90 E-value=3.4e+02 Score=29.44 Aligned_cols=36 Identities=8% Similarity=0.235 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s 286 (644)
.+++-...|+-.=+..++.-+.+.......|+.+..
T Consensus 73 ~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 73 ADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444455566666666666666666544
No 130
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.26 E-value=1.4e+02 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.320 Sum_probs=19.8
Q ss_pred hHhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q 006469 139 NRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182 (644)
Q Consensus 139 ~~~Lk~el~~l~~e~a~lk~q~~~~~~Lke~~~~le~~~e~~~~ 182 (644)
+..||.+|..+..+=+.+ ...++.++.-+.++..++++-+.
T Consensus 2 i~eLr~qi~~l~~e~~~l---~~e~dn~~~~~edfk~KyE~E~~ 42 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARV---EVERDNLAEDIMRLREKLQEEML 42 (86)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444443 22444455545555555544443
No 131
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.15 E-value=31 Score=28.70 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=18.8
Q ss_pred hhhhhHhhHhHHHHHHHHHHHHhHhhhhH
Q 006469 132 LSELESENRKMKIELEEYRTEATHLKNQQ 160 (644)
Q Consensus 132 ~~~le~e~~~Lk~el~~l~~e~a~lk~q~ 160 (644)
+..|+.||..|+.+|..|+.++..|++-.
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776665443
No 132
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=43.02 E-value=1.3e+02 Score=24.39 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 260 VERAQTRLLSLQREKDLLRSQLQS 283 (644)
Q Consensus 260 LEra~~R~~~lE~ene~Lr~eL~~ 283 (644)
-+.+.+|+..+|.+|..|..++..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~ 31 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRA 31 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344556666666666666666543
No 133
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.06 E-value=34 Score=23.14 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5667888888888888899999998886
No 134
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.97 E-value=72 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEG 437 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~ 437 (644)
+|++=++.|...+..++..+..+++
T Consensus 21 klenivarlendnanlekdianlek 45 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHH
Confidence 3444444444444444433333333
No 135
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=41.82 E-value=1.5e+02 Score=26.74 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=40.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhh--hhHhhHhHHHHHHHHHHHHhHhhhhHHHHH
Q 006469 88 QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSE--LESENRKMKIELEEYRTEATHLKNQQSTIR 164 (644)
Q Consensus 88 Q~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~--le~e~~~Lk~el~~l~~e~a~lk~q~~~~~ 164 (644)
+++||..++| |-.+...|...|-+.|=...+++.-.++.+ -.+....-+.-..-|..+|+++|....+++
T Consensus 65 haev~~v~~~-------F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~YD 136 (140)
T 1xaw_A 65 QSVLDEINKE-------LSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYD 136 (140)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677766654 778888888888777644433332222211 122233334455667777777665555554
No 136
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=41.68 E-value=34 Score=23.48 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5667888888888888888888888887
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.57 E-value=1.2e+02 Score=24.28 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
...++...+..+..++.++.+...+|..|-+.|..+++
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444555555555556666666666665554
No 138
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=41.55 E-value=1.1e+02 Score=30.01 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (644)
Q Consensus 213 ql~~ae~~l~~L~~~~e~~Q~~L~~~~~k~~~~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~ 285 (644)
++..++..+..+++.++.++..+...+.-+.. ......+++-...+++.|+.++..++.+.+.++..|....
T Consensus 61 ~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~-g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~ 132 (277)
T 2f1m_A 61 TYDSAKGDLAKAQAAANIAQLTVNRYQKLLGT-QYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTK 132 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 33344444444444444444444333322221 1233466777777777888888888777777777776544
No 139
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=41.01 E-value=56 Score=24.61 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.|-+..+.+||.++..+..+...|+.++..|+.
T Consensus 18 ~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 18 RKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445777777777777666666666666655
No 140
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=40.88 E-value=1.2e+02 Score=25.56 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006469 306 LSAKEKIISELNSELHNIETALSNE-R-EQHMNEIKKLNALLIEKEAALEDMKKELQARP 363 (644)
Q Consensus 306 l~~ke~~i~~L~~e~~~L~~~l~~~-r-~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~ 363 (644)
....+.+...+..++......+... . +.....+..++..+.+....+..++-++..+|
T Consensus 17 Fe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344555555555554444443211 1 22233355556666666666666666666664
No 141
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.37 E-value=72 Score=23.02 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 429 ~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
+.-...++.+-..++..+..+++-|+.||.|+
T Consensus 23 enivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444555555555555554
No 142
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.99 E-value=99 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSL 431 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~ 431 (644)
+|+++++.+...+..+...
T Consensus 7 qlenevaslenenetlkkk 25 (49)
T 3he5_A 7 QLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHh
Confidence 3556666665555555443
No 143
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=38.90 E-value=1.2e+02 Score=23.77 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 409 ~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.-||.|...|..-+.. ++.|..=+-.+.+.+..--.++.+||.++...+.
T Consensus 3 kQNKeL~~kl~~Kq~E-------I~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~ 52 (74)
T 2q6q_A 3 QQNKELNFKLREKQNE-------IFELKKIAETLRSKLEKYVDITKKLEDQNLNLQI 52 (74)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555554444 4444444556667777777888888888776653
No 144
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.80 E-value=95 Score=29.41 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQ 454 (644)
Q Consensus 414 L~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~ 454 (644)
|++|++.|..+++....+++.|+.++..+++.....+..+.
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 66666666666666666666666666666666544443333
No 145
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.37 E-value=1.4e+02 Score=26.21 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=29.5
Q ss_pred hHhHHHHHHHHHHHHhHhhhhHH-HHHHHHHHHHHHHHHHHHhH
Q 006469 139 NRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKV 181 (644)
Q Consensus 139 ~~~Lk~el~~l~~e~a~lk~q~~-~~~~Lke~~~~le~~~e~~~ 181 (644)
+..|+.+|+.|+.++..++.... -+..|+.++..|+..+++.-
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777765554 67778888888877765543
No 146
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=38.37 E-value=3.1e+02 Score=30.51 Aligned_cols=13 Identities=46% Similarity=0.465 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 006469 165 RLEERNRQLEQQM 177 (644)
Q Consensus 165 ~Lke~~~~le~~~ 177 (644)
.|+++.+++++.|
T Consensus 505 ~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 505 MLHEMQRKNEQMM 517 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 147
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=37.98 E-value=33 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566777777777888888888888876
No 148
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.79 E-value=86 Score=26.53 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCC--------CCCCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006469 265 TRLLSLQREKDLLRSQLQSANDEAGSR--------NSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (644)
Q Consensus 265 ~R~~~lE~ene~Lr~eL~~a~s~~~~~--------~~~~~~~~s~le~el~~ke~~i~~L~~e~~~L~~~l~~ 329 (644)
+|...|++.+..|..+|.+...+..+. .++.++...+++.+|......|..|..+...++..|..
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666555443321 02233333455555655566666666666666655543
No 149
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=37.59 E-value=37 Score=22.88 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 520 n~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+||..+..+-...+.|.+|+..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346777777777777788888887776
No 150
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.72 E-value=2.1e+02 Score=24.86 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=26.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk 545 (644)
....-..++....+-...+...++..+......+..+...+..+.
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666666666666666666666666665555554443
No 151
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=36.71 E-value=1.1e+02 Score=24.94 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=36.9
Q ss_pred ChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHH---HHhhHHHHHHhHHHHHHH
Q 006469 32 DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEK---LSLFNSLLKGYQEEVDNL 94 (644)
Q Consensus 32 dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~~ek---l~~~~~LLK~yQ~EID~L 94 (644)
|+..||+++. .....=..+|++|.+.++.|-+-||+-- +..=...+++||+-|.-|
T Consensus 6 ~l~eLq~e~~-------~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~el 64 (78)
T 2ic6_A 6 TLKEVQDNIT-------LHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGEL 64 (78)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666554 4444556899999999999999888732 223334566666666544
No 152
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.48 E-value=1.2e+02 Score=28.52 Aligned_cols=68 Identities=13% Similarity=0.225 Sum_probs=0.0
Q ss_pred cHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhcCCCChHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHH
Q 006469 73 PEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTE 152 (644)
Q Consensus 73 ~~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e 152 (644)
+++...+++.|.+.|+.++..|-..-..--..+-.++.. +-|||.-+ ..+..++..|+.++.....+
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a--~~~DeakI-----------~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA--SSPDTAKI-----------NAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCCHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 006469 153 A 153 (644)
Q Consensus 153 ~ 153 (644)
+
T Consensus 136 ~ 136 (175)
T 3lay_A 136 R 136 (175)
T ss_dssp H
T ss_pred H
No 153
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=36.02 E-value=48 Score=22.28 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 520 n~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+||..+..+-...+.|.+|+..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 457888888888888889999988876
No 154
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.75 E-value=44 Score=25.68 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=11.2
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhh
Q 006469 134 ELESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk 157 (644)
.|+.++..|+.++..|..++..|+
T Consensus 33 ~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 33 TLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 155
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.15 E-value=1.3e+02 Score=21.92 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 311 KIISELNSELHNIETALSNEREQHMNEIKKLNA 343 (644)
Q Consensus 311 ~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~ 343 (644)
..|.+|++-+..|+..+..+-..+.+-..+|.+
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKq 37 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQ 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666655554444444444433
No 156
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=35.05 E-value=1.9e+02 Score=23.85 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHhhhhhhhHHH
Q 006469 84 LKGYQEEVDNLTKRAKFGENA 104 (644)
Q Consensus 84 LK~yQ~EID~LTkRsK~aE~a 104 (644)
|..||.-+|.|..=-..+|..
T Consensus 4 L~~f~~~l~el~~WL~e~e~~ 24 (118)
T 3uul_A 4 LDSYQIALEEVLTWLLSAEDT 24 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999988766666654
No 157
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.02 E-value=51 Score=22.16 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 520 n~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+||..+..+-...+.|.+|+..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456788888888888888888888876
No 158
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.94 E-value=1.1e+02 Score=21.83 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 514 DRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
..+..|..+|+.....+...++.|++|-..|+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667777777777777777777777777665
No 159
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.91 E-value=53 Score=22.28 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5677888888888888899999998886
No 160
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.53 E-value=52 Score=22.27 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||..+..+-...+.|..|+..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4567888888888888888888888876
No 161
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.29 E-value=93 Score=26.34 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-------------hhHHHHHHHH
Q 006469 310 EKIISELNSELHNIETALSNE-REQHMNEIKKLNALLIEKEAALEDMKKELQARPTS-------------KMVDDLRKKV 375 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~-r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~~~~-------------sDYeeiKrEL 375 (644)
+.+...+..++......+... .+.....+...+..+.+....+..|+-++..+|.. +|++.+|+++
T Consensus 11 E~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554444444433221 01123335666666777777777777777777533 4666777776
Q ss_pred HHHH
Q 006469 376 KILQ 379 (644)
Q Consensus 376 ~iLk 379 (644)
.-++
T Consensus 91 k~~~ 94 (102)
T 1vcs_A 91 KRSR 94 (102)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 162
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.28 E-value=2.1e+02 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=20.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (644)
Q Consensus 249 ~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~ 282 (644)
...++.-+...+......+..++.+.+.|+.++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666654
No 163
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.52 E-value=1.4e+02 Score=21.99 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (644)
Q Consensus 508 Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs 560 (644)
.+-.|-+-+|..|.-|..||......++.|..|...+|. .++-+|+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe-------vlk~lq~ 52 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE-------VLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH-------HHHHHcc
Confidence 456788889999999999999999999988888887777 7776664
No 164
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.92 E-value=2e+02 Score=26.31 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~ 462 (644)
|..+.+.+..++......++.+..++..|+-++..++.++..++..|..|-..+..
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555566666666666666666666666555554443
No 165
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=32.56 E-value=2.8e+02 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=12.8
Q ss_pred hHhhHhHHHHHHHHHHHHhHh
Q 006469 136 ESENRKMKIELEEYRTEATHL 156 (644)
Q Consensus 136 e~e~~~Lk~el~~l~~e~a~l 156 (644)
-.++..|+.++..|..++..+
T Consensus 28 ~~eN~~Lk~e~e~l~~~~~~~ 48 (155)
T 2oto_A 28 RHENKDLKARLENAMEVAGRD 48 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666776666666555554
No 166
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=32.50 E-value=75 Score=25.78 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 516 FRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 516 fr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
...++.+|+.+...+..+|..|+.|+..|+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888776
No 167
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.27 E-value=1e+02 Score=29.23 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=29.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 304 NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKEL 359 (644)
Q Consensus 304 ~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l 359 (644)
..+.+.+..|+.|..||..|...|+ ....++..|+.++...+..+...+..+
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~----~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLD----TKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3455556668888888888887774 455566666666666655554444443
No 168
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=31.96 E-value=1.6e+02 Score=23.46 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
+.|...+..+.....++..++...+.++..+. -.++..+...|+.-|.
T Consensus 2 ~~L~k~i~~l~~E~eel~~klk~~~ee~~~~~--eee~~~~~~~lek~L~ 49 (71)
T 1s1c_X 2 SMLTKDIEILRRENEELTEKMKKAEEEYKLEK--EEEISNLKAAFEKNIN 49 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 44666666677777777777777666666655 2233344445555443
No 169
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.09 E-value=2e+02 Score=23.03 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 310 EKIISELNSELHNIETALSNEREQHMNEIKKL 341 (644)
Q Consensus 310 e~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L 341 (644)
+..|.+|++-+..|+.++.++-..+.+-..+|
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666666666655554444444333333
No 170
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.06 E-value=2.1e+02 Score=23.06 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 420 ~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
.|=...++|..+.+.++.++..+.+-.+.++.-|..||.+|-
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666666666666666666666666666666654
No 171
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.87 E-value=5e+02 Score=27.43 Aligned_cols=29 Identities=17% Similarity=-0.023 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~ 279 (644)
-+++-+...++.|++.+.++-.+-.-|-+
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 456 KLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 33444444444555555555444444433
No 172
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.34 E-value=1.5e+02 Score=23.37 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006469 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (644)
Q Consensus 421 lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~ 463 (644)
+..+..++......-...+.....++.+++..++.|+.+|..+
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666667777777888888888888887765
No 173
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.30 E-value=1.7e+02 Score=23.81 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (644)
-++.+|+..|..+.....++...+.....+..++..
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655555554444444333
No 174
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.95 E-value=2e+02 Score=22.58 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=41.3
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006469 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR 362 (644)
Q Consensus 301 ~le~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~~~ 362 (644)
.|-..+..+..+|.+|.-=+..|.++|- .....-.+|+.++......+..|...+.--
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLi----KYtelnKKLe~~~~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLE----KYVDITKKLEDQNLNLQIKISDLEKKLSDA 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHhhcccc
Confidence 5666677888888888888888877774 344445777777777777777777776543
No 175
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.88 E-value=84 Score=19.68 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006469 515 RFRARLRETEEEVRQLKEKIGVL 537 (644)
Q Consensus 515 Rfr~rn~ELE~el~~~~~~i~~l 537 (644)
|++++|.-|..++..+..+|..|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 67777777776666665555443
No 176
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=29.79 E-value=1.1e+02 Score=23.34 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (644)
Q Consensus 513 RDRfr~rn~ELE~el~~~~~~i~~lr~E~~~L 544 (644)
...+-+=|..|-+|+|..+..+..|+.|-..|
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 33444445555555555555555544444443
No 177
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.72 E-value=73 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667888888888888888888888876
No 178
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.63 E-value=86 Score=23.45 Aligned_cols=28 Identities=4% Similarity=0.183 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
++.+|..++..+..+++.|..+++.|+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666665
No 179
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.56 E-value=73 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||+....+-...+.|.+|+..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888888888888888876
No 180
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.50 E-value=1.7e+02 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456 (644)
Q Consensus 415 ~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kL 456 (644)
-.++..|+..+.-+..++++....++.++.+-...+.....|
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 344555555566666666666666666666666666665554
No 181
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.24 E-value=2.7e+02 Score=23.78 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT 443 (644)
Q Consensus 407 Ll~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~ 443 (644)
|+.+|-....+|+..+....++......|..++..+.
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666665555544
No 182
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.07 E-value=1.1e+02 Score=19.77 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 520 n~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
+.-|.+++..+..+|..|+-|+..|+.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666666666777777777776665
No 183
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.04 E-value=1.6e+02 Score=23.24 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 006469 337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378 (644)
Q Consensus 337 ~~~~L~~~l~~~~~~~~~L~~~l~~~~~~sDYeeiKrEL~iL 378 (644)
.+..|+.++..+......+..+...+ ..++..|..||.+|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~L--r~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQL--RQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHc
Confidence 34444444444433333333333332 13444444444443
No 184
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.60 E-value=81 Score=20.61 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 522 ETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 522 ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
-||++++.++.-++.|+..++.|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999988887764
No 185
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.89 E-value=1.9e+02 Score=23.73 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylq 559 (644)
....--..|..+| |.-..+--++...+...|..|+.|+..|+.-|..|=+.+.-+|
T Consensus 25 Pse~YWk~lAE~R---R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 25 PSSQYWKEVAEKR---RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666655 5666677778888888899999999999998888776655443
No 186
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.10 E-value=1.9e+02 Score=23.68 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH---Hhhhhc
Q 006469 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK---IRFVQD 560 (644)
Q Consensus 503 ~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEk---irylqs 560 (644)
..--..|..+| |.-..+--++..++...|..++.|+..|+.-|..|-+. ++||.+
T Consensus 19 e~YWk~lAE~R---r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~ 76 (83)
T 1wlq_A 19 SQYWKEVAEQR---RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 76 (83)
T ss_dssp CTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566554 55566666777888888999999999999999887655 455544
No 187
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.85 E-value=2.6e+02 Score=22.78 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=32.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 304 NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360 (644)
Q Consensus 304 ~el~~ke~~i~~L~~e~~~L~~~l~~~r~~~~~~~~~L~~~l~~~~~~~~~L~~~l~ 360 (644)
.++......|.+|+.|--..+.+|...+ .+++.|+.++..+..++..|+.++-
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK----~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATK----AEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3333344446666666665566664333 5566777777777777777776654
No 188
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.85 E-value=2.4e+02 Score=24.05 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 006469 367 MVDDLRKKVKILQ 379 (644)
Q Consensus 367 DYeeiKrEL~iLk 379 (644)
+++.+|+....|+
T Consensus 59 e~e~~Kr~~~~L~ 71 (103)
T 4h22_A 59 EFEREKHAHSILQ 71 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 189
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.91 E-value=74 Score=31.58 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
.-+.-+..|.+.+..+|.-|.+.++..++++..|+.|++.|++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455667777777777777777777777777777777777776
No 190
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.80 E-value=1.5e+02 Score=31.40 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.+..++..++.+...++..++.++.++..+.+.+.+-+.+-.+|-+.+..+..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36777888888888888888888888888888888888899999999988764
No 191
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.35 E-value=1.9e+02 Score=23.25 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhh
Q 006469 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (644)
Q Consensus 511 ~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylq 559 (644)
...+.+..|++=.|.-+..++..+...+.+|+.|+.----|++|++-++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555666667777775555555555443
No 192
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.21 E-value=2e+02 Score=23.32 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHh
Q 006469 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIR 556 (644)
Q Consensus 504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkir 556 (644)
.--..|..+| |.-..+--++..++...|..++.+|..|+..|..|=|...
T Consensus 16 ~YWk~lAE~R---R~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 16 QYWKEVAEQR---RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp THHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554 6666777788899999999999999999999988766543
No 193
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.85 E-value=2e+02 Score=23.14 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
.+.+|+.++.-.+.-+..++..+.++...|.+|...+..+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555566666666666666666655544
No 194
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.65 E-value=2.8e+02 Score=22.45 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=48.1
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
+|=.-|.++.-..+.||..||...++|..=-..++.-+..+..+..++.+-|..|......+.
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454557777888899999999999988887777777788888777777777777766655544
No 195
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=24.62 E-value=99 Score=30.59 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhh
Q 006469 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (644)
Q Consensus 504 siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkiry 557 (644)
+.++.|.-|.+++|.||.+||.++..+-... .+|-.+|.++.-
T Consensus 65 ~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A-----------~~Ne~l~~~~~~ 107 (252)
T 3e98_A 65 DAVSLVERQVRLLRERNIEMRHRLSQLMDVA-----------RENDRLFDKTRR 107 (252)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 5678899999999999999999998776432 456666666654
No 196
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.52 E-value=2.7e+02 Score=22.16 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (644)
Q Consensus 414 L~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL 460 (644)
+...+..+.....++..++...+.++..+..+-.....+...||.-|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666555543333334444555444
No 197
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.44 E-value=49 Score=32.86 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=18.9
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhhhhHHHHHHH
Q 006469 134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRL 166 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk~q~~~~~~L 166 (644)
.+..||.+|++++..|+.++..+..-..+..+|
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rL 55 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDL 55 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888888887777666654333333333
No 198
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.39 E-value=80 Score=21.30 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=16.6
Q ss_pred hhhHhhHhHHHHHHHHHHHHhHhh
Q 006469 134 ELESENRKMKIELEEYRTEATHLK 157 (644)
Q Consensus 134 ~le~e~~~Lk~el~~l~~e~a~lk 157 (644)
.||+.+..|-.++.+|+.|++.|+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456666777777777777777765
No 199
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.28 E-value=6.9e+02 Score=26.88 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (644)
Q Consensus 251 aEleml~~dLEra~~R~~~lE~ene~Lr~e 280 (644)
..+..|...++..+.+|..|+..+..+...
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566667777777787776665543
No 200
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.25 E-value=1.7e+02 Score=31.02 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006469 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (644)
Q Consensus 412 rkL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~~ 465 (644)
..|..+|..++....++...++.++.++..+.+++-....+-.+|-+.|..+..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 468889999999999999999999999999999999999999999999998875
No 201
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.23 E-value=1.9e+02 Score=20.49 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL 452 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l 452 (644)
-|...++.|+..+-.++..-+.+++-+..+..++..++..
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444334433344444444444444444433
No 202
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.05 E-value=1.1e+02 Score=19.15 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 006469 523 TEEEVRQLKEKIGVLTAELEKTK 545 (644)
Q Consensus 523 LE~el~~~~~~i~~lr~E~~~Lk 545 (644)
||=+...+.++|..|++.+.+|+
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 45555666667777777777765
No 203
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.84 E-value=2.9e+02 Score=27.96 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=32.1
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006469 245 ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (644)
Q Consensus 245 ~~~a~~aEleml~~dLEra~~R~~~lE~ene~Lr~eL~~a~s~ 287 (644)
+.....+++.....+++.++.++..++.+.+.++..|....=.
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~ 158 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKIT 158 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEE
Confidence 3444556777777888888888888998888888888765433
No 204
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.83 E-value=2.9e+02 Score=22.35 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006469 209 ALQDQLRQAKDSVATMQ 225 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~ 225 (644)
.|+.+|.++++.+.++.
T Consensus 56 ~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 56 ALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 205
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.13 E-value=3.6e+02 Score=23.29 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 209 ALQDQLRQAKDSVATMQK 226 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~ 226 (644)
.|+.+|.++++.+.+..+
T Consensus 73 ~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 73 SIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 206
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.29 E-value=2.4e+02 Score=20.73 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453 (644)
Q Consensus 416 ~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li 453 (644)
..|..|+..+..+..+...|+..-...++++..+..+.
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544443
No 207
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.28 E-value=2.4e+02 Score=20.90 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006469 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (644)
Q Consensus 413 kL~~eLt~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~ 461 (644)
.++..+-...........++..+...+..+...+.....-|.++...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666666777777777777665543
No 208
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.19 E-value=2.9e+02 Score=22.65 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHhhhh
Q 006469 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (644)
Q Consensus 510 t~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~Lk~DN~kLYEkirylq 559 (644)
..+++-+..=...|++++.....+|..+..+|+..+. +|+.|.
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~-------~i~~l~ 78 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQ-------SIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh
Confidence 3444444443344467888899999999999999888 777664
No 209
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.06 E-value=2.3e+02 Score=21.44 Aligned_cols=45 Identities=22% Similarity=0.156 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 420 ~lR~~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.+...+..++..+..+..++.....+++.+-..--.|+..+.+..
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555666666666666666666667666666666777766654
No 210
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.33 E-value=4e+02 Score=23.01 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHh
Q 006469 366 KMVDDLRKKVKILQA 380 (644)
Q Consensus 366 sDYeeiKrEL~iLk~ 380 (644)
.||...+..|..|+.
T Consensus 32 ~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 32 SELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccc
Confidence 467777777777663
No 211
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=20.99 E-value=3.9e+02 Score=22.76 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006469 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (644)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~li~kLE~DL~~~~ 464 (644)
.|.+|-.......++++...+...+....+..|+..+..+.
T Consensus 2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788888888888888888888888888888765
No 212
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.87 E-value=1.3e+02 Score=20.41 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006469 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (644)
Q Consensus 519 rn~ELE~el~~~~~~i~~lr~E~~~Lk~ 546 (644)
|..+||..+..+-.....+.+|+..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567888888888888888888888876
No 213
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.87 E-value=1.9e+02 Score=20.74 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006469 421 LKVKLSEKTSLLETAEGKIAELT 443 (644)
Q Consensus 421 lR~~~~~l~~~l~~l~~~~~~l~ 443 (644)
+...+.+++.++..++.++..+.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 214
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.61 E-value=1.8e+02 Score=20.41 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHHHhhhhc
Q 006469 529 QLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (644)
Q Consensus 529 ~~~~~i~~lr~E~~~Lk~DN~kLYEkirylqs 560 (644)
++..++.+|.+|-..|+..|+.--..|-||+.
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylek 38 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEK 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHH
Confidence 44556667777777888877777777777653
No 215
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.38 E-value=1.8e+02 Score=23.25 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006469 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (644)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~rn~ELE~el~~~~~~i~~lr~E~~~L 544 (644)
+-.+||..-..-..-+..++..|+.++..+..++..|+..+..|
T Consensus 37 sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 37 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666666666666666666555544
No 216
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.12 E-value=3.9e+02 Score=22.43 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006469 209 ALQDQLRQAKDSVATMQK 226 (644)
Q Consensus 209 ~L~~ql~~ae~~l~~L~~ 226 (644)
.|+.+|..+++.+.++.+
T Consensus 56 ~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 56 ALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555544
No 217
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.01 E-value=3.6e+02 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHhhhhhhHhhHhHHHHHHHHHHHHhH
Q 006469 119 YPALASIAEQDLKLSELESENRKMKIELEEYRTEATH 155 (644)
Q Consensus 119 ~PlLe~s~~~~~~~~~le~e~~~Lk~el~~l~~e~a~ 155 (644)
.|+|..+.. +.++..+..++..++..+..
T Consensus 4 KPLL~~~~~--------eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 4 MPLLSIARQ--------EEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp ------CHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccccchh--------HHHHHHHHHHHHHHHHHHHH
Confidence 467655432 44556666565555555544
No 218
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=20.01 E-value=97 Score=26.17 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=24.0
Q ss_pred HHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhhc
Q 006469 74 EEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYE 114 (644)
Q Consensus 74 ~ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~e 114 (644)
+-|..+-+.+||.-|+||.++- .+|++++|
T Consensus 65 ~~kv~en~~~L~QIQ~ei~s~r-----------d~hkR~~E 94 (115)
T 1ezj_A 65 ARKVDENKQLLKQIQESVESFR-----------DIYKRFSE 94 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 4566777889999999998775 78888774
Done!