Query 006471
Match_columns 643
No_of_seqs 339 out of 852
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 6.2E-29 2.1E-33 229.4 14.6 114 68-181 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.8 1.7E-18 5.9E-23 162.9 11.9 99 71-179 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 2.6E-15 8.9E-20 132.8 10.7 95 72-177 7-101 (104)
4 1wmh_B Partitioning defective- 95.4 0.059 2E-06 46.7 8.5 72 532-610 7-84 (86)
5 1vd2_A Protein kinase C, IOTA 95.0 0.053 1.8E-06 47.1 7.1 59 531-595 6-64 (89)
6 1na6_A Ecorii, restriction end 93.2 0.18 6.2E-06 54.3 8.0 93 72-165 17-123 (404)
7 1q1o_A Cell division control p 91.0 0.6 2E-05 41.3 7.4 74 531-604 5-85 (98)
8 2kkc_A Sequestosome-1; P62, PB 91.0 0.34 1.2E-05 43.0 5.9 64 531-600 5-83 (102)
9 2ktr_A Sequestosome-1; autopha 87.6 0.99 3.4E-05 41.1 6.4 64 530-600 19-98 (117)
10 1oey_A P67-PHOX, neutrophil cy 86.4 2.8 9.5E-05 36.0 8.1 70 533-610 7-79 (83)
11 2bkf_A Zinc-finger protein NBR 78.7 5 0.00017 34.8 6.8 65 533-604 8-73 (87)
12 1wj6_A KIAA0049 protein, RSGI 76.3 5.7 0.00019 35.3 6.6 60 533-601 16-75 (101)
13 1pqs_A Cell division control p 74.6 3.9 0.00013 34.5 4.9 58 546-604 5-64 (77)
14 1oey_J P40-PHOX, neutrophil cy 70.5 4.2 0.00014 36.3 4.3 51 548-607 28-78 (107)
15 3cgm_A SLYD, peptidyl-prolyl C 50.9 37 0.0013 31.7 7.3 98 154-267 3-110 (158)
16 3p8d_A Medulloblastoma antigen 38.4 46 0.0016 27.4 5.0 55 234-305 3-57 (67)
17 1mhn_A SurviVal motor neuron p 37.7 34 0.0011 26.7 4.0 29 236-267 2-30 (59)
18 1e8p_A Endoglucanase, dockerin 37.1 9.2 0.00031 29.5 0.6 15 578-592 19-33 (46)
19 2kfw_A FKBP-type peptidyl-prol 34.9 39 0.0013 32.8 4.8 100 154-267 3-114 (196)
20 4a4f_A SurviVal of motor neuro 33.8 41 0.0014 26.7 4.0 43 235-288 6-48 (64)
21 3s6w_A Tudor domain-containing 33.4 37 0.0013 25.8 3.6 28 237-267 1-28 (54)
22 2k8i_A SLYD, peptidyl-prolyl C 31.8 1.2E+02 0.0041 28.6 7.5 100 154-267 3-114 (171)
23 3o27_A Putative uncharacterize 30.3 43 0.0015 27.7 3.5 35 146-180 31-66 (68)
24 2jng_A Cullin-7, CUL-7; P53 bi 28.8 48 0.0016 29.6 3.9 69 226-306 10-78 (105)
25 2kr7_A FKBP-type peptidyl-prol 28.7 1.7E+02 0.0059 26.7 7.9 102 152-267 5-119 (151)
26 3qii_A PHD finger protein 20; 28.4 74 0.0025 27.4 4.9 55 235-306 19-73 (85)
27 2equ_A PHD finger protein 20-l 28.0 55 0.0019 27.2 3.9 40 235-287 7-46 (74)
28 1g5v_A SurviVal motor neuron p 27.8 57 0.0019 27.9 4.1 43 235-288 8-50 (88)
29 2e63_A KIAA1787 protein; struc 24.3 46 0.0016 31.6 3.2 24 152-175 116-139 (170)
30 3pnw_C Tudor domain-containing 20.8 88 0.003 25.9 3.9 42 236-288 16-57 (77)
31 4dt4_A FKBP-type 16 kDa peptid 20.1 2.1E+02 0.0071 27.0 6.8 103 153-267 24-138 (169)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=6.2e-29 Score=229.44 Aligned_cols=114 Identities=30% Similarity=0.464 Sum_probs=104.3
Q ss_pred CCCCceeeEEEecccccCCCCCceEEecchhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceeeccchhh
Q 006471 68 SPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWST 147 (643)
Q Consensus 68 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~v~D~~G~~W~Fr~~yrg~~rr~lLTtGWs~ 147 (643)
..++..++|+|+||+|||+++++|+||+++|+.|||+++..+..+.++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34567799999999999999999999999999999999987667889999999999999999999999999999999999
Q ss_pred hhcccCCCCCCEEEEEecCC--CcEEEEEEEccccC
Q 006471 148 FVTSKRLVAGDTFVFLRGEN--GELHVGVRCLARQQ 181 (643)
Q Consensus 148 FV~~K~L~aGD~VvF~R~~~--g~l~VgIRRa~~~~ 181 (643)
||++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999764 57999999988764
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.76 E-value=1.7e-18 Score=162.91 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=87.7
Q ss_pred CceeeEEEecccccCCCCCceEEecchhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceeeccchhhhhc
Q 006471 71 PKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVT 150 (643)
Q Consensus 71 ~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~v~D~~G~~W~Fr~~yrg~~rr~lLTtGWs~FV~ 150 (643)
+..++|+|+||+||+.++.+|.||+++|+.|||..+ +.+.++|. |+.|.|+|+|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 356899999999999987789999999999999763 36888888 6999999999973 7899999999999
Q ss_pred ccCCCCCCEEEEEecCCC--cEEEEEEEccc
Q 006471 151 SKRLVAGDTFVFLRGENG--ELHVGVRCLAR 179 (643)
Q Consensus 151 ~K~L~aGD~VvF~R~~~g--~l~VgIRRa~~ 179 (643)
+++|++||+|+|...++. .|.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999997765 59999999864
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.60 E-value=2.6e-15 Score=132.84 Aligned_cols=95 Identities=19% Similarity=0.315 Sum_probs=83.4
Q ss_pred ceeeEEEecccccCCCCCceEEecchhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceeeccchhhhhcc
Q 006471 72 KVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTS 151 (643)
Q Consensus 72 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~v~D~~G~~W~Fr~~yrg~~rr~lLTtGWs~FV~~ 151 (643)
..+.|.|+|+++|. ..+|.||+++++.+.+.+. ..+.++|..|+.|+++|.+++ ++..|++||..||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 34689999999994 4599999999988665442 378999999999999999874 578999999999999
Q ss_pred cCCCCCCEEEEEecCCCcEEEEEEEc
Q 006471 152 KRLVAGDTFVFLRGENGELHVGVRCL 177 (643)
Q Consensus 152 K~L~aGD~VvF~R~~~g~l~VgIRRa 177 (643)
++|++||.|+|...++..+.|.|.|.
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999885
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.42 E-value=0.059 Score=46.66 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=53.7
Q ss_pred ceeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceeEEEecCCCCeEEccCCChHHHH---hcce---
Q 006471 532 SRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFC---NMVK--- 605 (643)
Q Consensus 532 ~~vKV~m~G~~vgR~vDLs~~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~---~~vk--- 605 (643)
--||.+-+++--==.+|-+...+|++|+..|+++|.+. .-.+.+.|+|.+||++-+-++ ++|. .++|
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~plL 79 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTND--DSLHRALASGPPPL 79 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSH--HHHHHHTTSSSSCE
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----CCCEEEEEECCCCCEeeecCH--HHHHHHHHhCCCcE
Confidence 45777777753223566667789999999999999853 334899999999999998877 6664 5555
Q ss_pred eEEEe
Q 006471 606 RIFIC 610 (643)
Q Consensus 606 ri~I~ 610 (643)
||+|-
T Consensus 80 Rl~Iq 84 (86)
T 1wmh_B 80 RLLVQ 84 (86)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 56653
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.05 E-value=0.053 Score=47.14 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=46.0
Q ss_pred cceeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceeEEEecCCCCeEEccCC
Q 006471 531 RSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 595 (643)
Q Consensus 531 ~~~vKV~m~G~~vgR~vDLs~~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 595 (643)
..-||++.+|.-+-=.|+. --+|++|+.+|.++|.+.. ...+++.|.|.|||+.-+-.+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~----~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN----EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS----SCCEEEEECCSSSCCEECCSH
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC----CCeEEEEEECCCCCcccccCH
Confidence 4578999999744334444 5699999999999999752 445799999999998776654
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.17 E-value=0.18 Score=54.31 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=67.0
Q ss_pred ceeeEEEecccccCCCC----CceEEecchhhhcCCCCCC-CCCCCceEEEEE--eCCCCeEEEEEEEeC------CCcc
Q 006471 72 KVHSFSKVLTASDTSTH----GGFSVLRKHATECLPPLDM-NQSTPTQELVAK--DLHGYEWRFKHIFRG------QPRR 138 (643)
Q Consensus 72 ~~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~fP~Ld~-~~~~p~q~L~v~--D~~G~~W~Fr~~yrg------~~rr 138 (643)
....|+|.|++-|++.. .+|.+|+..+..+||.|+. ....+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 45789999999999876 4899999888999999983 344556655543 443445599999997 3335
Q ss_pred eeeccch-hhhhcccCCCCCCEEEEEec
Q 006471 139 HLLTTGW-STFVTSKRLVAGDTFVFLRG 165 (643)
Q Consensus 139 ~lLTtGW-s~FV~~K~L~aGD~VvF~R~ 165 (643)
|.||. | ..+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 77862 2 23455577889999998743
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.01 E-value=0.6 Score=41.31 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=53.1
Q ss_pred cceeEEEecCce----ee--eeecCCCCCChHHHHHHHHHHhhhccccCCCCceeEEEecCCCCeEEccC-CChHHHHhc
Q 006471 531 RSRTKVQMQGVA----VG--RALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNM 603 (643)
Q Consensus 531 ~~~vKV~m~G~~----vg--R~vDLs~~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~ 603 (643)
.--|||+-++.. ++ |.|=...--+|++|+.++.+=|.+...-.-....++-|+|.|||+..+++ +=|++-+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 357888887421 33 67777788899999999999999861111023468999999999977665 567776666
Q ss_pred c
Q 006471 604 V 604 (643)
Q Consensus 604 v 604 (643)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=90.99 E-value=0.34 Score=43.04 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=46.4
Q ss_pred cceeEEEecCc----eeeeeecCCC-----------CCChHHHHHHHHHHhhhccccCCCCceeEEEecCCCCeEEccCC
Q 006471 531 RSRTKVQMQGV----AVGRALDLTT-----------LVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 595 (643)
Q Consensus 531 ~~~vKV~m~G~----~vgR~vDLs~-----------~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 595 (643)
..-||++..|. .-=|++-|.. ..+|++|...+.++|.--. ...+.+.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----SSCEEEEEECTTCCEEEECSH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----CCcEEEEEECCCCCEEEecCH
Confidence 45689998752 2335555432 2489999999999996211 345899999999999988877
Q ss_pred ChHHH
Q 006471 596 PWHEF 600 (643)
Q Consensus 596 PW~~F 600 (643)
+++
T Consensus 81 --eEL 83 (102)
T 2kkc_A 81 --EEL 83 (102)
T ss_dssp --HHH
T ss_pred --HHH
Confidence 555
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=87.65 E-value=0.99 Score=41.09 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=46.3
Q ss_pred CcceeEEEecCc----eeeeeecCC-----------CCCChHHHHHHHHHHhh-hccccCCCCceeEEEecCCCCeEEcc
Q 006471 530 NRSRTKVQMQGV----AVGRALDLT-----------TLVGYDHLIDELEEMFD-IKGQLHTRTKWEIVYTDDEGDMMLVG 593 (643)
Q Consensus 530 ~~~~vKV~m~G~----~vgR~vDLs-----------~~~~Y~eL~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~mlvG 593 (643)
...-||++..|. .==|++-|. .-.+|++|...+.++|. +.+ ..+.+.|.|.|||+.-+.
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~-----~~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP-----GGFQAHYRAERGDLVAFS 93 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS-----SCEEEEEECTTCCEEEEC
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC-----CcEEEEEECCCCCEEEec
Confidence 456789999752 122555443 24599999999999994 432 358999999999998887
Q ss_pred CCChHHH
Q 006471 594 DDPWHEF 600 (643)
Q Consensus 594 D~PW~~F 600 (643)
.+ +++
T Consensus 94 sD--eEL 98 (117)
T 2ktr_A 94 SD--EEL 98 (117)
T ss_dssp SH--HHH
T ss_pred CH--HHH
Confidence 76 554
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.40 E-value=2.8 Score=35.96 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=56.6
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceeEEEec-CCCCeEEccCCChHHHHhcce--eEEE
Q 006471 533 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTD-DEGDMMLVGDDPWHEFCNMVK--RIFI 609 (643)
Q Consensus 533 ~vKV~m~G~~vgR~vDLs~~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--ri~I 609 (643)
-||||-+ +--.|....=-+|.+|...|.+=+.+.++- -+|-|.| .+|.+++.||.=++.-..-|+ ||++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~-----~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH-----TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG-----CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce-----eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 4677777 677788888889999999999999886432 2788999 688888999999998887755 6776
Q ss_pred e
Q 006471 610 C 610 (643)
Q Consensus 610 ~ 610 (643)
+
T Consensus 79 ~ 79 (83)
T 1oey_A 79 W 79 (83)
T ss_dssp E
T ss_pred E
Confidence 5
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=78.69 E-value=5 Score=34.76 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=45.6
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceeEEEecCCCCeEEccC-CChHHHHhcc
Q 006471 533 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNMV 604 (643)
Q Consensus 533 ~vKV~m~G~~vgR~vDLs~~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~v 604 (643)
-.||.-.|...-=-|.-..--++++|...+..+|++.. ++|.|.|.|||-.-|-- .=+++=++++
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~-------~~ikY~DEenD~v~i~Sq~E~eEAlkva 73 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSINSQGEYEEALKMA 73 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS-------EEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc-------eEEEEEcCCCCEEEEecHHHHHHHHHHh
Confidence 46888888653223533336789999999999999963 69999999999876643 3333334433
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.34 E-value=5.7 Score=35.29 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=45.8
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhhccccCCCCceeEEEecCCCCeEEccCCChHHHH
Q 006471 533 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFC 601 (643)
Q Consensus 533 ~vKV~m~G~~vgR~vDLs~~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~ 601 (643)
-.||.-.|...-=-|.-..--++++|...+..+|++.. ++|.|.|.|||-.-| .-+.+|-
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~-------~~IkY~DEenD~V~i--~Sq~E~e 75 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSI--NSQGEYE 75 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS-------BCCEEECTTSCEECC--CSHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc-------eEEEEecCCCCEEEE--ecHHHHH
Confidence 47899999754333544446789999999999999963 589999999999887 3456653
No 13
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=74.61 E-value=3.9 Score=34.52 Aligned_cols=58 Identities=22% Similarity=0.466 Sum_probs=41.6
Q ss_pred eecCCCCCChHHHHHHHHHHhhhccccCC-CCceeEEEecCCCCeEEcc-CCChHHHHhcc
Q 006471 546 ALDLTTLVGYDHLIDELEEMFDIKGQLHT-RTKWEIVYTDDEGDMMLVG-DDPWHEFCNMV 604 (643)
Q Consensus 546 ~vDLs~~~~Y~eL~~~L~~MF~~~g~l~~-~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~v 604 (643)
.|=...--+|++|+.++.+=|.+. .... .....+-|+|.|||+...+ |+=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT-HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT-TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc-ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 333445568999999999999975 1111 3456899999999987665 45677777765
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=70.49 E-value=4.2 Score=36.29 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=39.3
Q ss_pred cCCCCCChHHHHHHHHHHhhhccccCCCCceeEEEecCCCCeEEccCCChHHHHhcceeE
Q 006471 548 DLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRI 607 (643)
Q Consensus 548 DLs~~~~Y~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkri 607 (643)
||+.--.|++|+....+-|.-+ +-.+-|+|.|||+.-+=|+ ++--=|+++-
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------DIaLNYrD~eGDLIrildd--eDv~lmi~~s 78 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------DIALNYRDAEGDLVRLLSD--EDVALMVRQA 78 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------SEEEEEECTTSCEEECCSH--HHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHHhccc-------ceeeeeecCCCCEEEEcch--HHHHHHHHHh
Confidence 7888889999999999999843 3478899999999777666 5544444443
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=50.88 E-value=37 Score=31.70 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=61.3
Q ss_pred CCCCCEEEEE-ec-CCCcEEEEEEEccccCCCCCCccccCCccchhhHHHHHHHHHcCCeeEEEEecCC------C--cc
Q 006471 154 LVAGDTFVFL-RG-ENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRT------S--QF 223 (643)
Q Consensus 154 L~aGD~VvF~-R~-~~g~l~VgIRRa~~~~~~~p~sv~~~~~~~~~vl~~A~~a~~t~~~F~V~Y~Pr~------s--eF 223 (643)
.+.||.|.+. .. .+|+.+-.-+ ... .+....+-.| +.+|..-...|..++|.--|.. . -+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f-------~~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSY-------LHGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEE-------ETTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEE-------EECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888773 22 5676554332 111 0111122223 4567777778888888876643 1 67
Q ss_pred eeeHHHHHHHHcCCCccCCEEEEEeecCCCCCceeeeEEeeeec
Q 006471 224 IISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 267 (643)
Q Consensus 224 vV~~~~y~~a~~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~ 267 (643)
.|+++.+.. ...|.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPE--DAEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCT--TSCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCC--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 889888753 2589999999855 3442 567899999976
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=38.39 E-value=46 Score=27.36 Aligned_cols=55 Identities=13% Similarity=0.284 Sum_probs=39.7
Q ss_pred HcCCCccCCEEEEEeecCCCCCceeeeEEeeeecCCCCCCCCCcceeeeeccCCCCCCCCCccccCcceecc
Q 006471 234 VNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 305 (643)
Q Consensus 234 ~~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 305 (643)
|-..|.+|+++--+. +|- ++|-++|.+|.. + ....|..++.. .+.|..=+|-|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D~---~yYpA~I~si~~-------~--~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC---RFYPAKVTAVNK-------D--GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS---CEEEEEEEEECT-------T--SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CCC---CEeeEEEEEECC-------C--CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 556899999999998 443 899999999974 2 46899999933 4556555555543
No 17
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=37.71 E-value=34 Score=26.68 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCccCCEEEEEeecCCCCCceeeeEEeeeec
Q 006471 236 NKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 267 (643)
Q Consensus 236 ~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~ 267 (643)
..|.+|+.+-.+|..|. .||-++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 57999999999995443 899999999963
No 18
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=37.11 E-value=9.2 Score=29.46 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.2
Q ss_pred eeEEEecCCCCeEEc
Q 006471 578 WEIVYTDDEGDMMLV 592 (643)
Q Consensus 578 ~~v~Y~D~eGD~mlv 592 (643)
-.|+|+|.+|+|=.-
T Consensus 19 c~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 19 TKVEYTDASGQWGVQ 33 (46)
T ss_dssp SCEEEEETTEEEEEE
T ss_pred ceEEEEcCCCccccC
Confidence 369999999999643
No 19
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=34.88 E-value=39 Score=32.81 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCCCCEEEEE-e--cCCCcEEEEEEEccccCCCCCCccc-cCCccchhhHHHHHHHHHcCCeeEEEEecCC------C--
Q 006471 154 LVAGDTFVFL-R--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------S-- 221 (643)
Q Consensus 154 L~aGD~VvF~-R--~~~g~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vl~~A~~a~~t~~~F~V~Y~Pr~------s-- 221 (643)
.+.||.|.+. . ..+|+.+-.-+. ..|...+ ....+-.| +.+|..-...|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 5688988773 3 356765433211 1233322 22222223 4557666778888888876643 1
Q ss_pred cceeeHHHHHHHHcCCCccCCEEEEEeecCCCCCceeeeEEeeeec
Q 006471 222 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 267 (643)
Q Consensus 222 eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~ 267 (643)
-+.|+++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57788887742 247899999964 44442 57889998864
No 20
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=33.76 E-value=41 Score=26.73 Aligned_cols=43 Identities=5% Similarity=0.224 Sum_probs=31.9
Q ss_pred cCCCccCCEEEEEeecCCCCCceeeeEEeeeecCCCCCCCCCcceeeeeccCCC
Q 006471 235 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 288 (643)
Q Consensus 235 ~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 288 (643)
...|.+|+.+.-+|..|. .||.++|.+|...+ ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~--------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN--------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEecC
Confidence 468999999999995443 89999999997411 24567776654
No 21
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=33.43 E-value=37 Score=25.83 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=22.5
Q ss_pred CCccCCEEEEEeecCCCCCceeeeEEeeeec
Q 006471 237 KFAVGMRYKMRFEGEDSPERRFSGTVVGVED 267 (643)
Q Consensus 237 ~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~ 267 (643)
.|.+|+.+--.|..|. .||-++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4999999999995444 799999999953
No 22
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=31.78 E-value=1.2e+02 Score=28.62 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=60.8
Q ss_pred CCCCCEEEEE-e--cCCCcEEEEEEEccccCCCCCCccc-cCCccchhhHHHHHHHHHcCCeeEEEEecCC------C--
Q 006471 154 LVAGDTFVFL-R--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------S-- 221 (643)
Q Consensus 154 L~aGD~VvF~-R--~~~g~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vl~~A~~a~~t~~~F~V~Y~Pr~------s-- 221 (643)
.+.||.|.+. . ..+|+.+-.-+.. .|.... ....+-.| +.+|..-...|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 5678888773 3 3467655433210 122221 12222223 4567777778888888876643 1
Q ss_pred cceeeHHHHHHHHcCCCccCCEEEEEeecCCCCCceeeeEEeeeec
Q 006471 222 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 267 (643)
Q Consensus 222 eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~ 267 (643)
-+.|+++.+.. ...+.+||+|.+. +++- + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~~--~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLAE--TDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEEE--ETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEEE--CCCC--c-EEEEEEEEcC
Confidence 56788888753 3579999999854 4442 2 6889999864
No 23
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=30.33 E-value=43 Score=27.72 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=30.1
Q ss_pred hhhhcccCCCCCCEEEEEec-CCCcEEEEEEEcccc
Q 006471 146 STFVTSKRLVAGDTFVFLRG-ENGELHVGVRCLARQ 180 (643)
Q Consensus 146 s~FV~~K~L~aGD~VvF~R~-~~g~l~VgIRRa~~~ 180 (643)
..+++.-+|+.||.+...-+ .+|++.++.+|-+..
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 38999999999999999885 588999999996543
No 24
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=28.84 E-value=48 Score=29.57 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=44.7
Q ss_pred eHHHHHHHHcCCCccCCEEEEEeecCCCCCceeeeEEeeeecCCCCCCCCCcceeeeeccCCCCCCCCCccccCcceecc
Q 006471 226 SLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 305 (643)
Q Consensus 226 ~~~~y~~a~~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 305 (643)
..+.|-.-+..+.+||||+||.=.-|+.+. -=.|++. ++. + .-| ..||.|..... +-.|+-=.||.+.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-Gl~-----~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-GVP-----PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-TSS-----EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-CCc-----cceeeehhcCc---eEEEEeehhhhcC
Confidence 345677788889999999999854444332 2367777 432 2 122 89999987763 4456555677654
Q ss_pred C
Q 006471 306 A 306 (643)
Q Consensus 306 ~ 306 (643)
.
T Consensus 78 ~ 78 (105)
T 2jng_A 78 F 78 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 25
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=28.70 E-value=1.7e+02 Score=26.73 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=63.1
Q ss_pred cCCCCCCEEEEE-e--cC-CCcEEEEEEEccccCCCCCCccc-cCCccchhhHHHHHHHHHcCCeeEEEEecCC------
Q 006471 152 KRLVAGDTFVFL-R--GE-NGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------ 220 (643)
Q Consensus 152 K~L~aGD~VvF~-R--~~-~g~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vl~~A~~a~~t~~~F~V~Y~Pr~------ 220 (643)
+..+.||.|.+. . .. +|+.+-.-+. ..|.... ....+-.| +.+|..-...|..++|.--|..
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~~ 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVYE 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence 456789998874 3 23 6765443211 1232222 12222223 4567666778888888876642
Q ss_pred C--cceeeHHHHHHHHcCCCccCCEEEEEeecCCCCCceeeeEEeeeec
Q 006471 221 S--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 267 (643)
Q Consensus 221 s--eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~ 267 (643)
. -+.|+++.+ . ...+.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 78 ~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 78 SSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp SCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred cceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 1 678889888 1 3589999999854 4442 457899999975
No 26
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=28.42 E-value=74 Score=27.36 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=39.9
Q ss_pred cCCCccCCEEEEEeecCCCCCceeeeEEeeeecCCCCCCCCCcceeeeeccCCCCCCCCCccccCcceeccC
Q 006471 235 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVA 306 (643)
Q Consensus 235 ~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~~ 306 (643)
...|.+|+++--+. +|- ++|-++|++|... ..+.|.+++.. .+-|.+=+|.|+..
T Consensus 19 ~~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~---------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-CCC---CEeeEEEEEECCC---------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 56899999999999 443 8999999999742 46899999933 45566666666543
No 27
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.98 E-value=55 Score=27.18 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=31.8
Q ss_pred cCCCccCCEEEEEeecCCCCCceeeeEEeeeecCCCCCCCCCcceeeeeccCC
Q 006471 235 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEP 287 (643)
Q Consensus 235 ~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~ 287 (643)
...|.+|+++.-++. |. .||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC---RYYPAKIEAINK------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS---SEEEEEEEEEST------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC---CEEEEEEEEECC------C---CEEEEEEecC
Confidence 457999999999996 43 899999999963 1 3568888765
No 28
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=27.81 E-value=57 Score=27.92 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=30.9
Q ss_pred cCCCccCCEEEEEeecCCCCCceeeeEEeeeecCCCCCCCCCcceeeeeccCCC
Q 006471 235 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 288 (643)
Q Consensus 235 ~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 288 (643)
...|.+|+.+.-.|..|. .||-++|.+|.... ....|.-.+=.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~--------~~~~V~fiDYG 50 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDFKR--------ETCVVVYTGYG 50 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT--------TEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecCCC--------CEEEEEEecCC
Confidence 468999999999995443 89999999996411 24567765544
No 29
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.33 E-value=46 Score=31.63 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.1
Q ss_pred cCCCCCCEEEEEecCCCcEEEEEE
Q 006471 152 KRLVAGDTFVFLRGENGELHVGVR 175 (643)
Q Consensus 152 K~L~aGD~VvF~R~~~g~l~VgIR 175 (643)
..|.+||.|-|++..+|+|++.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 457899999999999999998863
No 30
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=20.84 E-value=88 Score=25.86 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=30.6
Q ss_pred CCCccCCEEEEEeecCCCCCceeeeEEeeeecCCCCCCCCCcceeeeeccCCC
Q 006471 236 NKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 288 (643)
Q Consensus 236 ~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~~dp~wp~S~WR~L~V~WDe~~ 288 (643)
..|.+|+.+--.|..|. .||-++|.+|.... ....|...+-.
T Consensus 16 ~~~kvGd~C~A~ys~Dg---~wYRA~I~~i~~~~--------~~~~V~fvDYG 57 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDN---KFYRAEVEALHSSG--------MTAVVKFIDYG 57 (77)
T ss_dssp TTCCTTCEEEEEETTTT---EEEEEEEEEECTTS--------SEEEEEETTTC
T ss_pred CCCCcCCEEEEEECCCC---CEEEEEEEEEeCCC--------CEEEEEEEcCC
Confidence 47999999999995444 89999999996311 34556665544
No 31
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=20.06 E-value=2.1e+02 Score=27.00 Aligned_cols=103 Identities=11% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCCCCCEEEEE-e--cCCCcEEEEEEEccccCCCCCCccc-cCCccchhhHHHHHHHHHcCCeeEEEEecCC------C-
Q 006471 153 RLVAGDTFVFL-R--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------S- 221 (643)
Q Consensus 153 ~L~aGD~VvF~-R--~~~g~l~VgIRRa~~~~~~~p~sv~-~~~~~~~~vl~~A~~a~~t~~~F~V~Y~Pr~------s- 221 (643)
..+.||.|.+. . ..+|+.+-.-+.. +.|.... ....+-.| +.+|..-...|..++|..-|.. .
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vipG-~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSEG-LEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCHH-HHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 57789999883 3 3577754432110 1232222 11222223 4667777788999999877643 1
Q ss_pred -cceeeHHHHHHHHcCCCccCCEEEEEeecCCCCCceeeeEEeeeec
Q 006471 222 -QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 267 (643)
Q Consensus 222 -eFvV~~~~y~~a~~~~w~~GmRFkM~fe~eDs~~~~~~GtI~~v~~ 267 (643)
=+.|+++.+.. ...+.+||+|.+ ++++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 46788887753 346899999875 44442 468899999975
Done!