Query 006472
Match_columns 643
No_of_seqs 442 out of 2285
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 23:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5226 CEG1 mRNA capping enzy 100.0 2.5E-60 5.4E-65 472.9 15.8 299 309-619 41-367 (404)
2 KOG2386 mRNA capping enzyme, g 100.0 9.9E-56 2.1E-60 465.3 20.0 349 83-441 4-391 (393)
3 PF01331 mRNA_cap_enzyme: mRNA 100.0 9.9E-44 2.1E-48 350.8 13.5 190 315-513 1-192 (192)
4 cd07895 Adenylation_mRNA_cappi 100.0 3.8E-39 8.2E-44 323.7 19.7 199 305-514 16-215 (215)
5 cd06846 Adenylation_DNA_ligase 99.9 4.7E-27 1E-31 230.0 18.3 178 312-514 1-182 (182)
6 KOG1719 Dual specificity phosp 99.9 7E-26 1.5E-30 207.3 11.6 171 66-264 1-172 (183)
7 cd07898 Adenylation_DNA_ligase 99.9 2.6E-24 5.7E-29 213.9 16.3 163 327-515 18-201 (201)
8 PTZ00242 protein tyrosine phos 99.9 1E-23 2.2E-28 203.2 16.3 147 100-264 14-160 (166)
9 cd07903 Adenylation_DNA_ligase 99.9 7.1E-23 1.5E-27 207.2 18.3 170 325-517 28-224 (225)
10 PTZ00393 protein tyrosine phos 99.9 7.3E-23 1.6E-27 204.0 16.2 140 102-264 92-231 (241)
11 cd07897 Adenylation_DNA_ligase 99.9 4.3E-22 9.4E-27 198.9 16.0 161 327-515 21-205 (207)
12 KOG1720 Protein tyrosine phosp 99.9 4.3E-22 9.3E-27 191.8 15.1 149 100-260 57-206 (225)
13 PRK09247 ATP-dependent DNA lig 99.9 2.3E-21 5E-26 218.5 22.4 170 327-525 222-417 (539)
14 cd07901 Adenylation_DNA_ligase 99.9 8.9E-22 1.9E-26 196.7 15.0 161 329-515 24-207 (207)
15 cd07906 Adenylation_DNA_ligase 99.9 9.9E-22 2.2E-26 193.8 15.1 157 329-514 15-189 (190)
16 cd07900 Adenylation_DNA_ligase 99.9 1.6E-21 3.4E-26 196.4 16.0 165 325-515 26-218 (219)
17 cd07905 Adenylation_DNA_ligase 99.9 2.6E-21 5.7E-26 191.4 14.8 158 329-515 15-193 (194)
18 PF03919 mRNA_cap_C: mRNA capp 99.9 7.1E-22 1.5E-26 175.4 7.6 58 555-612 48-105 (105)
19 cd08039 Adenylation_DNA_ligase 99.9 9.7E-21 2.1E-25 192.1 16.5 182 316-515 4-234 (235)
20 PRK07636 ligB ATP-dependent DN 99.9 1.5E-20 3.3E-25 195.3 18.1 161 329-524 17-194 (275)
21 TIGR02779 NHEJ_ligase_lig DNA 99.8 1.2E-20 2.6E-25 198.6 16.3 169 329-525 11-192 (298)
22 PRK08224 ligC ATP-dependent DN 99.8 1.4E-20 3.1E-25 201.2 16.2 163 330-524 24-207 (350)
23 cd07902 Adenylation_DNA_ligase 99.8 1.8E-20 3.9E-25 188.1 15.3 158 330-515 34-212 (213)
24 PRK09633 ligD ATP-dependent DN 99.8 4.1E-20 8.8E-25 209.7 19.5 277 329-627 15-362 (610)
25 PHA02587 30 DNA ligase; Provis 99.8 1.4E-19 3.1E-24 201.8 22.6 175 323-525 145-371 (488)
26 TIGR00574 dnl1 DNA ligase I, A 99.8 2.8E-20 6.2E-25 209.4 17.0 169 331-524 188-385 (514)
27 PRK03180 ligB ATP-dependent DN 99.8 7.5E-20 1.6E-24 204.7 15.6 163 330-524 204-389 (508)
28 cd09232 Snurportin-1_C C-termi 99.8 1.9E-19 4.2E-24 175.7 16.4 163 329-515 20-186 (186)
29 smart00195 DSPc Dual specifici 99.8 1.8E-19 4E-24 168.0 13.8 113 139-260 25-137 (138)
30 PLN03113 DNA ligase 1; Provisi 99.8 2.1E-19 4.6E-24 206.8 16.8 175 324-524 385-591 (744)
31 PRK01109 ATP-dependent DNA lig 99.8 2.1E-19 4.5E-24 205.0 15.9 166 330-524 248-445 (590)
32 PF00782 DSPc: Dual specificit 99.8 1.3E-19 2.8E-24 167.8 11.2 116 139-260 17-132 (133)
33 PF01068 DNA_ligase_A_M: ATP d 99.8 2E-19 4.4E-24 178.5 13.1 166 324-513 14-202 (202)
34 PRK09632 ATP-dependent DNA lig 99.8 1.2E-18 2.7E-23 200.4 17.9 165 327-524 474-650 (764)
35 COG1793 CDC9 ATP-dependent DNA 99.8 1.5E-18 3.4E-23 190.7 14.9 166 331-525 134-322 (444)
36 PRK05972 ligD ATP-dependent DN 99.8 2.2E-18 4.9E-23 200.0 16.7 166 330-525 249-427 (860)
37 PHA00454 ATP-dependent DNA lig 99.8 4.9E-18 1.1E-22 180.1 17.9 182 312-524 6-228 (315)
38 KOG1718 Dual specificity phosp 99.8 2.6E-18 5.5E-23 160.0 12.7 118 139-265 41-158 (198)
39 cd00127 DSPc Dual specificity 99.7 1.7E-17 3.6E-22 154.5 14.0 113 139-258 26-138 (139)
40 PRK09125 DNA ligase; Provision 99.7 5.7E-17 1.2E-21 169.0 19.4 208 329-584 42-281 (282)
41 cd07896 Adenylation_kDNA_ligas 99.7 3.5E-17 7.7E-22 159.1 11.9 146 329-514 15-174 (174)
42 KOG2836 Protein tyrosine phosp 99.7 2E-16 4.4E-21 141.9 13.8 136 102-258 17-152 (173)
43 PRK12361 hypothetical protein; 99.7 5.3E-16 1.2E-20 176.6 16.0 120 139-264 119-239 (547)
44 KOG1717 Dual specificity phosp 99.7 4E-16 8.7E-21 154.8 11.9 119 139-265 196-315 (343)
45 KOG1716 Dual specificity phosp 99.7 8.8E-16 1.9E-20 160.8 13.7 121 139-265 99-219 (285)
46 KOG0966 ATP-dependent DNA liga 99.6 1.4E-14 3.1E-19 161.8 13.8 176 322-518 242-441 (881)
47 TIGR02776 NHEJ_ligase_prk DNA 99.6 1.3E-14 2.8E-19 163.4 13.5 140 356-525 1-153 (552)
48 KOG2386 mRNA capping enzyme, g 99.6 8.9E-16 1.9E-20 163.1 2.0 290 305-613 36-351 (393)
49 KOG2283 Clathrin coat dissocia 99.5 7.4E-14 1.6E-18 152.2 11.3 146 100-257 18-169 (434)
50 COG2453 CDC14 Predicted protei 99.5 6.8E-13 1.5E-17 129.8 13.4 101 153-258 62-163 (180)
51 KOG0967 ATP-dependent DNA liga 99.3 4.8E-12 1E-16 139.0 12.3 179 323-524 358-565 (714)
52 PF03162 Y_phosphatase2: Tyros 99.3 5.1E-12 1.1E-16 121.6 8.6 103 132-243 26-132 (164)
53 PF05706 CDKN3: Cyclin-depende 99.2 7.2E-11 1.6E-15 112.0 8.9 102 127-235 60-168 (168)
54 cd07894 Adenylation_RNA_ligase 99.1 4.6E-10 9.9E-15 119.9 13.8 147 330-504 48-205 (342)
55 smart00404 PTPc_motif Protein 99.1 7.7E-10 1.7E-14 97.0 10.9 91 166-258 5-102 (105)
56 smart00012 PTPc_DSPc Protein t 99.1 7.7E-10 1.7E-14 97.0 10.9 91 166-258 5-102 (105)
57 TIGR01244 conserved hypothetic 98.9 1.4E-08 3E-13 94.8 13.3 105 123-241 13-124 (135)
58 cd00047 PTPc Protein tyrosine 98.8 1.9E-08 4.1E-13 102.1 11.0 92 164-257 130-227 (231)
59 PRK15375 pathogenicity island 98.7 5.7E-08 1.2E-12 106.4 11.4 99 164-262 423-529 (535)
60 PLN02727 NAD kinase 98.7 6.5E-08 1.4E-12 112.1 12.4 100 122-231 266-371 (986)
61 smart00194 PTPc Protein tyrosi 98.7 9E-08 1.9E-12 98.8 10.6 84 171-258 166-255 (258)
62 KOG1572 Predicted protein tyro 98.4 2.8E-06 6.1E-11 84.5 12.2 119 113-244 66-190 (249)
63 PHA02740 protein tyrosine phos 98.4 2.9E-06 6.3E-11 89.6 11.8 87 171-257 186-282 (298)
64 PF14566 PTPlike_phytase: Inos 98.3 7.5E-07 1.6E-11 84.6 6.3 64 156-225 85-148 (149)
65 PF04273 DUF442: Putative phos 98.3 1.9E-06 4E-11 77.6 8.1 84 125-221 15-105 (110)
66 PF13350 Y_phosphatase3: Tyros 98.3 1.6E-06 3.5E-11 83.5 7.4 105 126-239 31-161 (164)
67 PHA02742 protein tyrosine phos 98.3 5.9E-06 1.3E-10 87.6 11.6 88 171-258 191-291 (303)
68 PF00102 Y_phosphatase: Protei 98.3 5.7E-06 1.2E-10 83.3 11.0 79 177-258 148-232 (235)
69 PHA02747 protein tyrosine phos 98.3 6.3E-06 1.4E-10 87.7 11.5 85 171-255 192-288 (312)
70 PHA02746 protein tyrosine phos 98.2 8E-06 1.7E-10 87.3 11.1 87 172-258 211-309 (323)
71 PHA02738 hypothetical protein; 98.0 3.1E-05 6.6E-10 82.8 11.2 87 171-257 187-288 (320)
72 KOG3132 m3G-cap-specific nucle 98.0 0.00011 2.4E-09 73.0 13.3 153 330-507 116-271 (325)
73 COG2365 Protein tyrosine/serin 98.0 2.2E-05 4.7E-10 80.9 8.3 45 200-244 135-179 (249)
74 KOG0790 Protein tyrosine phosp 97.9 1.3E-05 2.8E-10 85.7 5.3 91 165-256 416-514 (600)
75 COG3453 Uncharacterized protei 97.8 0.00023 5.1E-09 63.8 11.2 104 121-238 12-122 (130)
76 KOG0792 Protein tyrosine phosp 97.7 9.3E-05 2E-09 86.7 8.5 90 171-263 1036-1134(1144)
77 TIGR01209 RNA ligase, Pab1020 97.6 0.00057 1.2E-08 73.5 12.8 163 309-499 57-228 (374)
78 COG5599 PTP2 Protein tyrosine 97.6 0.00011 2.3E-09 74.5 5.8 87 172-263 194-294 (302)
79 KOG0791 Protein tyrosine phosp 97.4 0.00053 1.2E-08 72.5 8.8 95 166-263 255-354 (374)
80 COG5350 Predicted protein tyro 97.3 0.0033 7.1E-08 58.9 11.3 118 129-253 22-146 (172)
81 KOG0789 Protein tyrosine phosp 97.2 0.0014 3.1E-08 72.1 9.3 58 200-257 298-361 (415)
82 COG1423 ATP-dependent DNA liga 97.1 0.0081 1.8E-07 63.3 13.2 161 310-499 67-236 (382)
83 KOG0793 Protein tyrosine phosp 96.5 0.034 7.3E-07 63.2 13.5 86 168-256 897-988 (1004)
84 PF14671 DSPn: Dual specificit 96.1 0.015 3.2E-07 54.6 6.9 71 171-243 38-112 (141)
85 KOG4228 Protein tyrosine phosp 94.8 0.043 9.2E-07 65.7 6.0 82 171-255 703-789 (1087)
86 PF04179 Init_tRNA_PT: Initiat 94.0 0.88 1.9E-05 50.9 13.7 114 139-257 317-448 (451)
87 KOG4228 Protein tyrosine phosp 93.9 0.1 2.2E-06 62.7 6.4 81 177-258 995-1080(1087)
88 PF01653 DNA_ligase_aden: NAD- 93.8 0.31 6.7E-06 52.1 9.5 146 331-501 108-293 (315)
89 PF09414 RNA_ligase: RNA ligas 92.7 0.25 5.5E-06 48.3 6.3 102 331-433 2-128 (186)
90 cd00114 LIGANc NAD+ dependent 92.4 2.7 5.8E-05 44.8 14.0 145 331-501 102-286 (307)
91 PRK07956 ligA NAD-dependent DN 92.1 6.6 0.00014 46.3 17.9 161 331-517 109-317 (665)
92 PF05098 LEF-4: Late expressio 92.0 3.8 8.3E-05 45.4 14.7 206 329-589 233-450 (450)
93 KOG3673 FtsJ-like RNA methyltr 91.8 0.55 1.2E-05 52.4 7.9 156 309-489 570-732 (845)
94 TIGR02307 RNA_lig_RNL2 RNA lig 91.1 1.3 2.9E-05 47.2 9.8 107 327-433 22-144 (325)
95 PRK14350 ligA NAD-dependent DN 90.8 14 0.0003 43.7 18.6 162 331-518 111-315 (669)
96 TIGR00575 dnlj DNA ligase, NAD 90.4 8.8 0.00019 45.2 16.7 161 331-518 97-306 (652)
97 smart00532 LIGANc Ligase N fam 90.3 3.1 6.6E-05 46.6 12.2 163 331-517 104-312 (441)
98 PRK08097 ligB NAD-dependent DN 90.0 11 0.00023 43.6 16.4 157 331-518 119-310 (562)
99 PHA02142 putative RNA ligase 89.7 2.6 5.7E-05 45.7 10.8 105 328-434 167-298 (366)
100 PRK14351 ligA NAD-dependent DN 88.0 17 0.00036 43.1 16.7 160 330-517 132-339 (689)
101 cd01518 RHOD_YceA Member of th 87.0 4.6 0.0001 35.0 8.9 29 199-230 59-87 (101)
102 PLN02160 thiosulfate sulfurtra 80.6 5.4 0.00012 37.1 6.8 29 199-230 79-107 (136)
103 cd01523 RHOD_Lact_B Member of 77.9 15 0.00033 31.6 8.5 29 199-230 59-87 (100)
104 PRK01415 hypothetical protein; 75.6 22 0.00047 36.8 10.1 106 100-230 92-197 (247)
105 KOG4471 Phosphatidylinositol 3 71.4 7.6 0.00016 44.3 5.9 29 197-225 370-398 (717)
106 PRK00142 putative rhodanese-re 68.6 22 0.00049 38.0 8.7 87 122-230 111-197 (314)
107 PF00581 Rhodanese: Rhodanese- 67.6 29 0.00064 29.8 7.9 91 126-230 1-98 (113)
108 TIGR02306 RNA_lig_DRB0094 RNA 65.4 44 0.00095 36.2 10.0 104 329-434 158-277 (341)
109 PF06602 Myotub-related: Myotu 65.1 13 0.00028 40.4 6.1 24 199-222 229-252 (353)
110 PRK05320 rhodanese superfamily 64.7 45 0.00098 34.6 9.8 89 123-230 110-201 (257)
111 COG0272 Lig NAD-dependent DNA 62.6 1.5E+02 0.0033 34.9 14.1 160 329-518 108-318 (667)
112 cd01448 TST_Repeat_1 Thiosulfa 60.9 20 0.00044 32.0 5.7 31 198-230 76-106 (122)
113 cd01519 RHOD_HSP67B2 Member of 60.1 28 0.00061 30.0 6.4 29 199-230 64-92 (106)
114 cd01522 RHOD_1 Member of the R 59.2 47 0.001 29.7 7.8 29 199-230 62-90 (117)
115 TIGR03865 PQQ_CXXCW PQQ-depend 57.0 1.4E+02 0.003 28.6 11.0 30 199-230 114-143 (162)
116 COG0607 PspE Rhodanese-related 51.6 19 0.00042 31.1 3.8 30 199-231 59-88 (110)
117 PRK05600 thiamine biosynthesis 51.4 39 0.00085 37.0 7.0 83 124-230 272-358 (370)
118 cd01530 Cdc25 Cdc25 phosphatas 47.7 1E+02 0.0022 27.8 8.1 25 199-225 66-91 (121)
119 PF03668 ATP_bind_2: P-loop AT 45.2 33 0.00072 36.1 4.9 39 181-219 215-260 (284)
120 cd01443 Cdc25_Acr2p Cdc25 enzy 43.2 1.6E+02 0.0035 25.9 8.5 18 200-217 65-82 (113)
121 cd01533 4RHOD_Repeat_2 Member 43.1 33 0.00071 30.1 4.0 81 124-229 11-91 (109)
122 PF10640 Pox_ATPase-GT: mRNA c 42.6 72 0.0016 33.7 6.8 66 318-393 217-282 (313)
123 COG1660 Predicted P-loop-conta 40.1 38 0.00083 35.3 4.3 39 181-219 216-261 (286)
124 PRK05569 flavodoxin; Provision 39.0 2.5E+02 0.0055 25.5 9.5 113 132-260 24-137 (141)
125 PRK05416 glmZ(sRNA)-inactivati 37.5 49 0.0011 34.9 4.9 39 181-219 218-263 (288)
126 KOG1089 Myotubularin-related p 36.5 54 0.0012 37.7 5.2 21 200-220 343-363 (573)
127 cd01449 TST_Repeat_2 Thiosulfa 35.9 99 0.0021 27.1 6.0 29 199-230 76-104 (118)
128 COG1054 Predicted sulfurtransf 35.7 2.2E+02 0.0047 30.3 9.0 104 102-229 94-197 (308)
129 cd05567 PTS_IIB_mannitol PTS_I 33.1 42 0.00091 28.4 2.9 21 202-223 1-21 (87)
130 KOG3824 Huntingtin interacting 32.8 3.2E+02 0.0069 29.4 9.6 67 163-230 318-397 (472)
131 PRK07411 hypothetical protein; 30.6 1.2E+02 0.0027 33.4 6.8 28 200-230 341-368 (390)
132 PF04343 DUF488: Protein of un 29.1 2.6E+02 0.0056 25.2 7.6 45 127-173 2-54 (122)
133 COG0696 GpmI Phosphoglyceromut 25.9 2.5E+02 0.0053 31.9 7.9 173 78-270 46-236 (509)
134 cd01529 4RHOD_Repeats Member o 25.7 80 0.0017 26.8 3.4 29 199-230 54-82 (96)
135 cd01447 Polysulfide_ST Polysul 25.6 78 0.0017 26.9 3.4 29 199-230 59-87 (103)
136 COG2089 SpsE Sialic acid synth 25.6 1.7E+02 0.0036 31.6 6.2 81 129-216 94-190 (347)
137 cd01520 RHOD_YbbB Member of th 25.5 89 0.0019 28.3 3.9 31 198-230 83-113 (128)
138 KOG1530 Rhodanese-related sulf 25.4 1.2E+02 0.0025 28.4 4.5 78 123-217 23-104 (136)
139 cd01534 4RHOD_Repeat_3 Member 25.0 93 0.002 26.3 3.7 28 200-230 55-82 (95)
140 cd01526 RHOD_ThiF Member of th 22.7 1E+02 0.0022 27.6 3.7 28 199-229 70-97 (122)
141 PF02673 BacA: Bacitracin resi 22.6 77 0.0017 33.0 3.2 27 209-237 159-185 (259)
142 COG5016 Pyruvate/oxaloacetate 22.1 1.7E+02 0.0036 32.5 5.6 152 32-225 52-220 (472)
143 PRK13352 thiamine biosynthesis 21.1 4.4E+02 0.0096 29.4 8.6 95 126-226 75-198 (431)
144 cd01532 4RHOD_Repeat_1 Member 21.0 1.5E+02 0.0032 25.0 4.2 30 200-230 49-78 (92)
145 cd01528 RHOD_2 Member of the R 20.6 1.3E+02 0.0029 25.6 3.9 82 126-230 3-84 (101)
146 cd01525 RHOD_Kc Member of the 20.5 1.3E+02 0.0027 25.8 3.7 27 201-230 65-91 (105)
147 PF13292 DXP_synthase_N: 1-deo 20.2 1.6E+02 0.0034 30.9 4.8 41 157-209 229-269 (270)
148 PRK00162 glpE thiosulfate sulf 20.2 5.6E+02 0.012 22.0 8.4 28 200-230 57-84 (108)
No 1
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=100.00 E-value=2.5e-60 Score=472.91 Aligned_cols=299 Identities=34% Similarity=0.487 Sum_probs=248.7
Q ss_pred CCCCCCcccccchhhhhhhcccceeeeecCceeEEEEEEECC------EEEEEeCCCccccccC-CCCCcCCc-cccccc
Q 006472 309 MQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITID------GCYLIDRCFNFRRVQM-RFPCRNSN-EGLGEK 380 (643)
Q Consensus 309 ~~FPGsqPVslsr~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~------~vyLidR~~~~~~v~~-~FP~~~~~-~~~~~~ 380 (643)
..|||||||||+.+|++.|..++|+||||+||+|+||+++.+ ++|++||+|+||.+.- .||+.... +| +.
T Consensus 41 ~tFpGsqPVsf~~~~i~~Ll~~dy~VCEKsDGvR~Ll~vte~p~tg~~~~y~~DR~nnfY~v~~~f~p~~~~~k~g--e~ 118 (404)
T COG5226 41 ETFPGSQPVSFTLDNIGLLLNNDYLVCEKSDGVRALLLVTEEPVTGAFRGYFYDRRNNFYEVHTSFPPCSTVLKDG--EV 118 (404)
T ss_pred ccCCCCcceeeehhhHHHHHhCCeEEEEccCCeEEEEEEEecccCCCcceEEEeccCceEEeccccCCcccccccC--cE
Confidence 679999999999999999999999999999999999999853 6999999999998864 44533221 22 35
Q ss_pred CCCCeEeeEEEEEecCCCCCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006472 381 THHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 460 (643)
Q Consensus 381 ~~~~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~p 460 (643)
.+.+|+||||+|.|..+.++-++++|++||||+++|.-++.++.++|++.|++++.+|+...+. +-..+....|
T Consensus 119 l~~dtlldgelV~d~~p~~k~~qlryl~fdcLa~~g~~~~~~~~s~Rl~~l~Ke~~kp~~~~r~------s~~~~~~~fp 192 (404)
T COG5226 119 LLEDTLLDGELVFDCLPYEKVPQLRYLLFDCLAYAGMFVERMEKSERLKTLQKEDEKPRERKRV------SIEIDSGSFP 192 (404)
T ss_pred EeccceecceEEEEeccccchHHHHHHHHHHhhhcceeEeecchhhHHHHhhhhhcccHhhhhh------eeeccccccc
Confidence 6899999999999988766546899999999999999999999999999999999999755442 1112334678
Q ss_pred cEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEEEecC-----------
Q 006472 461 FRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDD----------- 529 (643)
Q Consensus 461 f~I~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~~~nTvDF~l~~~~~----------- 529 (643)
|.+.+|.+...+++-++++. +|.+.|++|||||||.+.||..|++..+|||||.++|||||++.+...
T Consensus 193 f~~s~K~M~~syg~~ki~k~-ip~L~HgnDGLIFTp~~~PY~~Gkd~~lLKWKP~~~NTiDF~lvl~~~~~e~~Dyny~~ 271 (404)
T COG5226 193 FHFSVKQMLKSYGFWKIYKK-IPELKHGNDGLIFTPADEPYSVGKDGALLKWKPASLNTIDFRLVLHKKWSEVDDYNYVC 271 (404)
T ss_pred eeeeHHHHHhhhhHHHHHhh-cccccCCCCceEeccCCCCcccCccceeeecCccccCceeeeeeeccccccccCcceee
Confidence 99999999999999999964 799999999999999999999999999999999999999999977621
Q ss_pred -CceeEEEEeCCeee-eecCceeEecC-------CCCCCCCceEEEEEEeCCCCeeEEEEEecCCCCCChHHHHHHHHHh
Q 006472 530 -DRQLLYVFERGKKK-LMEGSSVEFTD-------REPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRS 600 (643)
Q Consensus 530 -~~~~L~~~~~g~~~-~~~~~~~~f~~-------~~~~~~dg~IvEc~~d~~~~~W~~~R~R~DK~~pN~~~tv~~v~~S 600 (643)
....|+|+.+.+.. ++.... ..| ..-..+.++||||+.+. .|.|+++|+|+||.+|||++||.+|++|
T Consensus 272 ~p~f~l~Vw~gRk~yrfFa~~~--v~d~ew~~lk~~~~pl~~rivEc~l~~-e~~W~~lrfRdDK~~~NhisvV~~VLeS 348 (404)
T COG5226 272 SPKFGLDVWFGRKTYRFFASGE--VIDGEWCELKYDCDPLYWRIVECVLKK-EGAWKLLRFRDDKDTPNHISVVCNVLES 348 (404)
T ss_pred cccccccEEecccceeeeeeeE--echHHHHHHhhhcccchhhHHHHHhcc-CCceEEEEeecCCCCCchhhHHHHHHHH
Confidence 23467777754433 222211 112 33457899999999985 4589999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 006472 601 IRDNITEEVLLNEIQEIIR 619 (643)
Q Consensus 601 I~~~It~e~Ll~~i~~i~~ 619 (643)
|+|+||.|+|.....-|+.
T Consensus 349 i~D~vs~EdL~~~~~vire 367 (404)
T COG5226 349 IRDNVSIEDLSTFYSVIRE 367 (404)
T ss_pred HhccCcHHHHHHHHHHHHH
Confidence 9999999999998877654
No 2
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=100.00 E-value=9.9e-56 Score=465.29 Aligned_cols=349 Identities=44% Similarity=0.737 Sum_probs=298.3
Q ss_pred CCCCCCCCccCCCCCCcc-cCceeecCCCCccccccCCCCCC-CCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhc
Q 006472 83 RNKLPPGWLDCPPFGQEI-GGCIIPSKVPLSEFFNDCIPPGK-RYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLK 160 (643)
Q Consensus 83 ~~~~p~~W~~~~~~g~~I-~~~flp~k~Pl~~~~~~~i~~~~-~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~ 160 (643)
...+|.+|++||+.|+++ .++|||+|+||++.++.+++++. +|+++++++++++++..||++||||++.+||+..+++
T Consensus 4 ~~~lp~~w~~~p~~G~~~~~~rfi~~K~pL~~~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~ 83 (393)
T KOG2386|consen 4 PGELPPRWLDCPPVGAVIDDTRFIPFKTPLNSSYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELE 83 (393)
T ss_pred cccCCcccccCCCCCCccccceEEEEecccCCCCCcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceeeeecccccc
Confidence 348999999999999864 68999999999999999999998 9999999999999999999999999999999989999
Q ss_pred cCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHh
Q 006472 161 KEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAE 240 (643)
Q Consensus 161 ~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~ 240 (643)
..|+.|+++.|.|++.+|+.+.+..|+..+..|......++..|+|||+||+||||+|||+|||...+|+..+|++.|+.
T Consensus 84 ~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~ 163 (393)
T KOG2386|consen 84 ERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFAD 163 (393)
T ss_pred ccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cCCCccCCHHHHHHHHHHHhccCCCCCCCCCCCcccccc--CCCCCCCCCCCCCCCCcccCCc-----------------
Q 006472 241 VRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKREL--DLNGEAVPDDDDDGVPAAALHE----------------- 301 (643)
Q Consensus 241 ~Rp~~i~~~~~l~~L~~~y~~~~~~~~~~p~~P~W~~~~--~~~~~~~~~~~~~~~~~~~~~~----------------- 301 (643)
+||++|+++.|+.+|+.+|+...+..+++|..|.|+++. ..++..+.++|+.....+++|+
T Consensus 164 ~r~~gi~k~dyi~~L~~~~~~~~p~~vs~p~~~~~~~~~~~~~~~~~~~~~Dg~i~t~~~~pg~~~g~~~~~~k~k~~~~ 243 (393)
T KOG2386|consen 164 ARPPGIEKQDYIDALYSRYHDIFPFKVSCPSMPDWKRSIKLKKPVHKLHGNDGLIFTPAEIPGSKNGKQEALLKWKPFSL 243 (393)
T ss_pred hCCCccCchHHHHHHhhcccccccccccCCCCcchhhhhhhccccccccccCCCcCCcccCccccccchhhhhcCCchhc
Confidence 999999999999999999999998889999999999843 3333332221111111111221
Q ss_pred ------c-----cC-----CCCCCCCCCCcccccchhhhhhhcccceeeeecCceeEEEEEEECCE-EEEEeCCCc-ccc
Q 006472 302 ------N-----NE-----GRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG-CYLIDRCFN-FRR 363 (643)
Q Consensus 302 ------~-----~~-----~~~~~~FPGsqPVslsr~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~-~~~ 363 (643)
. |+ -....++ |+|||| |.++..+....|.++||+||+||++++++++ +|++||... +..
T Consensus 244 n~~~~~~~~~~~q~~~~~l~~~~~~~-g~~~~~--r~~~~~~~~~~y~~~We~dg~~~~~L~~~~~~~~~~dR~~~~~~~ 320 (393)
T KOG2386|consen 244 NTIDFGVKLEKPQPELGDLQCKRKNE-GAQPVS--RENYKLLVFEYYEASWEADGTRYMMLIDGDGEYYDFDRWRFVKGR 320 (393)
T ss_pred CCcccceeecCCCCCccchhhhhccc-ccCCcc--ccchhhhhhhhhhhhhcccCcEEEEEecCCceeEechhhhHHHhh
Confidence 0 00 1122334 999999 9999999999999999999999999999887 688887765 334
Q ss_pred ccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCCCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCcccc
Q 006472 364 VQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNY 441 (643)
Q Consensus 364 v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~ 441 (643)
-+++||...+. .+.+..||+|||++.|+.... ..++|++||++.+|++++...||. |++++.++|++|+..
T Consensus 321 ~~~~~~~~~~~----~~~~~~tl~dge~~lD~l~~~--~~~r~l~Yd~~r~n~~~v~~~~f~-r~~~~~~evi~~r~~ 391 (393)
T KOG2386|consen 321 ENLRKIREDSD----TKVLHQTLLDGEMILDRLKEE--AIPRYLIYDMVRFNSQKVEKRPFS-RWQIIEKEVIDPREL 391 (393)
T ss_pred hhhhccccccc----chhhhhhhcccceeccccccc--cchhheeeeeeeccCcccccCcch-HHHHHHHHhcCchhc
Confidence 46777644332 134688999999999876554 378999999999999999999999 999999999998753
No 3
>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 3RTX_A 3KYH_D 3S24_G 1CKN_B 1CKO_A 1CKM_B 1P16_B.
Probab=100.00 E-value=9.9e-44 Score=350.84 Aligned_cols=190 Identities=46% Similarity=0.832 Sum_probs=156.5
Q ss_pred cccccchhhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCcccccc-CCCCCcCCcccccccCCCCeEeeEEEEE
Q 006472 315 HPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQ-MRFPCRNSNEGLGEKTHHFTLLDGEMII 393 (643)
Q Consensus 315 qPVslsr~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~-~~FP~~~~~~~~~~~~~~~tlLDGElV~ 393 (643)
|||||+|+|+..|.+++|+||||+||+||||+++++++|||||+++++.++ +.||..... .....+.+||||||||.
T Consensus 1 qPVS~~r~~l~~l~~~~Y~V~eKaDG~Ryll~i~~~~~ylidr~~~~~~v~~~~~p~~~~~--~~~~~~~~TLLDGElV~ 78 (192)
T PF01331_consen 1 QPVSFSRKNLQLLQQKDYFVCEKADGTRYLLLITDNGVYLIDRKNNVFKVDNLHFPSKKDS--SDGRHHQDTLLDGELVL 78 (192)
T ss_dssp EEEE--TTGHHHHHHS-EEEEEEESSEEEEEEEEEEEEEEEETTS-EEEESSST-ECTTC----TTCEGCSEEEEEEEEE
T ss_pred CCcccchhhHHHHhhCCcEEEECCCCcEEEEEEecceEEEEeCCCcEEEecCccccccccc--ccccccCCEEEEEEEEc
Confidence 899999999999999999999999999999999999999999999988887 899976431 11234789999999999
Q ss_pred ecCCCCCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechh
Q 006472 394 DKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLST 473 (643)
Q Consensus 394 d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~ 473 (643)
|..++ ...++|+|||||+++|++++++||.+|+++|++.|+.|+.... . .+..+....+||.++.|+|++++.
T Consensus 79 d~~~~--~~~~~flifD~l~~~G~~v~~~~~~~Rl~~l~~~i~~p~~~~~--~---~~~~~~~~~~pf~i~~K~~~~~~~ 151 (192)
T PF01331_consen 79 DKDPG--EKKPRFLIFDILAINGQNVTDKPLDERLAYLQEEIIEPRKNAE--L---KSGIIKKKKEPFSIRIKDFFPIYQ 151 (192)
T ss_dssp EECTT--CEEEEEEEEEEEEETTEEGCCSBHHHHHHHHHHHTHHHHHHHH--C---HTTSCTCTTSSSEEEE---EEGGG
T ss_pred ccCCC--CCceEEEEEeeehhCCcEeccCCHHHHHHHHHHHHHHHHHhhc--c---ccccccccccceeeeccccHHHHh
Confidence 98765 2689999999999999999999999999999999999986542 0 123344567899999999999999
Q ss_pred HHH-HHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEe
Q 006472 474 VNK-LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWK 513 (643)
Q Consensus 474 ~~~-ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWK 513 (643)
+.. +...+++.++|++|||||||.+.||++|||..+||||
T Consensus 152 ~~~~~~~~~~~~l~h~~DGLIFtp~~~pY~~Gt~~~llKWK 192 (192)
T PF01331_consen 152 IEKLLFEEFIPKLPHETDGLIFTPVNTPYVPGTCPNLLKWK 192 (192)
T ss_dssp HHHHCHHCCCCCTTSTEEEEEEEESSSB--SEEEEEEEEE-
T ss_pred hHHHHHHHhhccCCCCCCEEEEecCCCCccCCCCCccEeeC
Confidence 998 5567889999999999999999999999999999998
No 4
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes. RNA capping enzymes transfer GMP from GTP to the 5'-diphosphate end of nascent mRNAs to form a G(5')ppp(5')RNA cap structure. The RNA cap is found only in eukarya. RNA capping is chemically analogous to the first two steps of polynucleotide ligation. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. Structural studies reveal a shared structure for DNA ligases and capping enzymes, with a common catalytic core composed of an adenylation or nucleotidyltransferase domain and a C-terminal OB-fold domain containing conserved sequence motifs. The adenylation domain binds ATP and contains many active site residues.
Probab=100.00 E-value=3.8e-39 Score=323.70 Aligned_cols=199 Identities=47% Similarity=0.752 Sum_probs=165.7
Q ss_pred CCCCCCCCCCcccccchhhhhhhcccceeeeecCceeEEEEEEEC-CEEEEEeCCCccccccCCCCCcCCcccccccCCC
Q 006472 305 GRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITI-DGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHH 383 (643)
Q Consensus 305 ~~~~~~FPGsqPVslsr~~l~~l~~~~Y~V~eK~DG~R~ll~i~~-~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~ 383 (643)
.+...+|||||||||+++|+..+...+|+||||+||+|++|++.+ +++||+||+++++.. .||........ .....
T Consensus 16 ~~~~~~FpG~~pvs~~~~~~~~~~~~~y~ve~K~DG~R~~l~~~~~~~v~l~sR~~~~~~~--~~~~~~~~~~~-~~~~~ 92 (215)
T cd07895 16 GWERGGFPGSQPVSFSRKNLELLKQNDYFVCEKSDGVRYLLLITGRGEVYLIDRKNDVFKV--PGLFFPRRKNL-EPHHQ 92 (215)
T ss_pred ccCCCCCCCCCccCccHHHHHHHhhCCeEEEEeEcCeEEEEEEecCCcEEEEeCCCCeEEe--ccccCCCcccc-ccccc
Confidence 466789999999999999999999999999999999999999999 899999999986544 34433210000 12357
Q ss_pred CeEeeEEEEEecCCCCCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEE
Q 006472 384 FTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRV 463 (643)
Q Consensus 384 ~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I 463 (643)
+||||||||.+..++ ..+++|+|||||+++|++++++||.+|+++|++.+..+...... +........+|.|
T Consensus 93 ~~ilDGElv~~~~~~--~~~~~~~vFDiL~~~g~~l~~~pl~~R~~~L~~~i~~~~~~~~~------~~~~~~~~~~~~i 164 (215)
T cd07895 93 GTLLDGELVIDKVPG--KKRPRYLIFDILAFNGQSVTEKPLSERLKYIKKEVIEPRNELLK------KGPIDKAKEPFSV 164 (215)
T ss_pred CeeeEEEEEEEcCCC--ceEEEEEEEEEEEECCcCccCCCHHHHHHHHHHhchhHHHHhhh------cChhhcCCCCeEE
Confidence 899999999987543 25789999999999999999999999999999988776532210 0111234578899
Q ss_pred EecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEec
Q 006472 464 RRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKY 514 (643)
Q Consensus 464 ~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP 514 (643)
+.|++++++++..+++.+.+.+.|++||||||+.++||.+||+..||||||
T Consensus 165 ~~k~~~~~~~~~~~~~~~~~~~~~~~EGlIfk~~~~~Y~~Gr~~~~lKwKp 215 (215)
T cd07895 165 RLKDFFPLYKIEKLFEKIIPKLPHENDGLIFTPNDEPYVPGTDKNLLKWKP 215 (215)
T ss_pred EecceEeHHhHHHHHHhccccCCCCCCCEEEccCCCCccCccCCcceeeCC
Confidence 999999999999999988788999999999999999999999999999998
No 5
>cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases. ATP-dependent polynucleotide ligases catalyze the phosphodiester bond formation of nicked nucleic acid substrates using ATP as a cofactor in a three step reaction mechanism. This family includes ATP-dependent DNA and RNA ligases. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent DNA ligases have a highly modular architecture, consisting of a unique arrangement of two or more discrete domains, including a DNA-binding domain, an adenylation or nucleotidyltransferase (NTase) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many active site residues. Together with the C-terminal OB-fold domain, it comprises a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core contains six conserved seq
Probab=99.95 E-value=4.7e-27 Score=229.98 Aligned_cols=178 Identities=21% Similarity=0.287 Sum_probs=139.6
Q ss_pred CCCcccccchhhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEE
Q 006472 312 PGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEM 391 (643)
Q Consensus 312 PGsqPVslsr~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGEl 391 (643)
|+++|+|+.+.+...+...+|+|++|+||+|+++++.+++++++||++..+ +..||..... .+ ...+..++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~e~K~DG~R~~~~~~~~~v~~~sR~g~~~--~~~~~~~~~~-~~-~~~~~~~ilDGEl 76 (182)
T cd06846 1 PQLLNPILEEALSEYDEQDEYYVQEKYDGKRALIVALNGGVFAISRTGLEV--PLPSILIPGR-EL-LTLKPGFILDGEL 76 (182)
T ss_pred CCccchhhhHHHhhccccCcEEEEEccCceEEEEEEcCCeEEEEeCCCCEE--ecccccccch-HH-hccCCCeeEEEEE
Confidence 568899999998777888999999999999999999999999999999843 4455543210 01 1235789999999
Q ss_pred EEecCCCCCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeec
Q 006472 392 IIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL 471 (643)
Q Consensus 392 V~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~ 471 (643)
|....+. ...+++|++||||+++|.+++++||.+|+++|++.+..... ..++.+..+..++.
T Consensus 77 v~~~~~~-~~~~~~~~~FDil~~~~~~~~~~p~~eR~~~L~~~v~~~~~-----------------~~~~~i~~~~~~~~ 138 (182)
T cd06846 77 VVENREV-ANPKPTYYAFDVVPLSGVGLRDLPYSDRFAYLKSLLKEFEG-----------------LDPVKLVPLENAPS 138 (182)
T ss_pred EeccCCC-ccceeEEEEEEEEEECCCccccCCHHHHHHHHHHHhhhhcc-----------------CCceeEEEeecccc
Confidence 9976433 22578999999999999999999999999999997743211 12455666666665
Q ss_pred hh--HHHHHHHhcccccCCCceEEEEeCCCCC--ccCCCCCeEEEec
Q 006472 472 ST--VNKLLKEFIPKLSHDADGLVFQGWDDPY--VPRTHEGLLKWKY 514 (643)
Q Consensus 472 ~~--~~~ll~~~~~~l~h~~DGLIf~p~~spY--~~G~~~~llKWKP 514 (643)
.. +..+++. ...|+.||||||+.++|| .+|++..|+||||
T Consensus 139 ~~~~~~~~~~~---~~~~g~EGvi~K~~~s~Y~~~~gr~~~wlK~Kp 182 (182)
T cd06846 139 YDETLDDLLEK---LKKKGKEGLVFKHPDAPYKGRPGSSGNQLKLKP 182 (182)
T ss_pred cchHHHHHHHH---hhhcCCceEEEEcCCCCccccCCCCCceEeecC
Confidence 44 3555553 566999999999999999 9999999999998
No 6
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=7e-26 Score=207.28 Aligned_cols=171 Identities=18% Similarity=0.331 Sum_probs=138.6
Q ss_pred CceeEeeeecccccccCCCCCCCCCccCCCCCCcccCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEE
Q 006472 66 PAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVI 145 (643)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~p~~W~~~~~~g~~I~~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VI 145 (643)
+.||++|||++.||+.+.+.--.+| | ++++-+--..+||.. . -..++. ..+++.||
T Consensus 1 ~~ar~~fyptllynvv~~k~s~~~w--y-~~~~~v~~~~~~FrS----~------------~~~~i~-----ke~v~gvv 56 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREKASAFRW--Y-RIDEFVILGAMPFRS----M------------DVPLIK-----KENVGGVV 56 (183)
T ss_pred CCceeeecHHHHHHHHHHHHhhhce--e-eecceEEEeeccccc----c------------cchHHH-----hcCCCeEE
Confidence 3589999999999999988777888 4 444332112344443 1 112332 26899999
Q ss_pred EcCCCCCCC-CcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHH
Q 006472 146 DLTNTTRYY-PTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLM 224 (643)
Q Consensus 146 dLt~~~~~y-~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm 224 (643)
.|+.+-++- ...+|++.||+++.+|+.|....|+.+.|++.+ +||.+...-|+.|+|||+||.+||+|||+||||
T Consensus 57 ~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aV----eFi~k~asLGktvYVHCKAGRtRSaTvV~cYLm 132 (183)
T KOG1719|consen 57 TLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAV----EFIHKNASLGKTVYVHCKAGRTRSATVVACYLM 132 (183)
T ss_pred EeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHH----HHHHhccccCCeEEEEecCCCccchhhhhhhhh
Confidence 998654333 235899999999999999998899999888764 777777778999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCC
Q 006472 225 RSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRL 264 (643)
Q Consensus 225 ~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~ 264 (643)
++.+|++++|++.+++.||.+..++.|++.|.+||.....
T Consensus 133 q~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 133 QHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred hhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998654
No 7
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f
Probab=99.92 E-value=2.6e-24 Score=213.94 Aligned_cols=163 Identities=22% Similarity=0.301 Sum_probs=124.9
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC-------
Q 006472 327 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS------- 399 (643)
Q Consensus 327 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~------- 399 (643)
.....|++++|+||+|+++++.+++++++||++.. .+..||..... + ....+++|||||||+-..++.
T Consensus 18 ~~~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~~--~t~~~p~i~~~--~-~~~~~~~vLDGElv~~~~~~~~~f~~~~ 92 (201)
T cd07898 18 KKPAAAWVEDKYDGIRAQVHKDGGRVEIFSRSLED--ITDQFPELAAA--A-KALPHEFILDGEILAWDDNRGLPFSELF 92 (201)
T ss_pred hCCCeEEEEEeeceEEEEEEEeCCEEEEEcCCChh--chhhhhhHHHH--H-HhCCCCEEEEEEEEEEeCCCCCcHHHHH
Confidence 45668999999999999999999999999999973 35678865331 1 123578999999997422211
Q ss_pred -------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEec
Q 006472 400 -------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 466 (643)
Q Consensus 400 -------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K 466 (643)
...++.|+|||+|+++|++++++||.+|+++|++.+... +-.|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~vFDil~~~g~~l~~~p~~eR~~~L~~~~~~~---------------------~~~i~~~ 151 (201)
T cd07898 93 KRLGRKFRDKFLDEDVPVVLMAFDLLYLNGESLLDRPLRERRQLLEELFVEI---------------------PGRIRIA 151 (201)
T ss_pred HHhcccccchhhhccCcEEEEEEeEEeECCcchhhCCHHHHHHHHHHhhcCC---------------------CCcEEEe
Confidence 113489999999999999999999999999999966321 0114555
Q ss_pred ceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecC
Q 006472 467 DFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYA 515 (643)
Q Consensus 467 ~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKP~ 515 (643)
++....+.+++.+.+...+.++.||||+++.+++|.+|+ +..|+||||.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~g~EGim~K~~~s~Y~~g~Rs~~wlK~K~~ 201 (201)
T cd07898 152 PALPVESAEELEAAFARARARGNEGLMLKDPDSPYEPGRRGLAWLKLKKE 201 (201)
T ss_pred eeEEcCCHHHHHHHHHHHHHcCCceEEEeCCCCCcCCCCcCCCcEEeCCC
Confidence 666666654444444457889999999999999999996 8999999983
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=1e-23 Score=203.21 Aligned_cols=147 Identities=19% Similarity=0.241 Sum_probs=126.7
Q ss_pred ccCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCC
Q 006472 100 IGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPD 179 (643)
Q Consensus 100 I~~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~ 179 (643)
++++||||+.|+++.+.. .++.++. .+|+.||+++. +.|+++.++..||.|+++|+.|+ .+|+
T Consensus 14 ~~~r~~~~~~P~~~~~~~------------~l~~L~~--~gI~~Iv~l~~--~~~~~~~~~~~gi~~~~~p~~D~-~~P~ 76 (166)
T PTZ00242 14 VLFKFLILDAPSPSNLPL------------YIKELQR--YNVTHLVRVCG--PTYDAELLEKNGIEVHDWPFDDG-APPP 76 (166)
T ss_pred eceEEEEecCCCcccHHH------------HHHHHHh--CCCeEEEecCC--CCCCHHHHHHCCCEEEecCCCCC-CCCC
Confidence 568999999998886553 2344443 57999999984 57888889999999999999885 7899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHH
Q 006472 180 NASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFY 259 (643)
Q Consensus 180 ~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y 259 (643)
.+.+..|++.+.+++......+++|+|||.+|+||||+++|||||+..+|++++|++.++++||+++ +..|++.|..|.
T Consensus 77 ~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~ 155 (166)
T PTZ00242 77 KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYK 155 (166)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHH
Confidence 9999999999999887544679999999999999999999999999988999999999999999887 689999998888
Q ss_pred hccCC
Q 006472 260 HEKRL 264 (643)
Q Consensus 260 ~~~~~ 264 (643)
...+.
T Consensus 156 ~~~~~ 160 (166)
T PTZ00242 156 PRKKA 160 (166)
T ss_pred HHhcc
Confidence 76553
No 9
>cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligase in eukaryotic cells (I, III and IV). DNA ligase IV is required for DNA non-homologous end joining pathways, including recombination of the V(D)J immunoglobulin gene segments in cells of the mammalian immune system. DNA ligase IV is stabilized by forming a complex with XRCC4, a nuclear phosphoprotein, which is phosphorylated by DNA-dependent protein kinase. DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more di
Probab=99.90 E-value=7.1e-23 Score=207.21 Aligned_cols=170 Identities=21% Similarity=0.272 Sum_probs=123.8
Q ss_pred hhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCccc-------ccccCCCCeEeeEEEEEecCC
Q 006472 325 QLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEG-------LGEKTHHFTLLDGEMIIDKLP 397 (643)
Q Consensus 325 ~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~-------~~~~~~~~tlLDGElV~d~~~ 397 (643)
..+...+|++++|+||.|+++++.++.+.+++|+++. .+..||....... .......+++||||||+-...
T Consensus 28 ~~~~~~~~~~E~K~DG~R~~i~~~~~~v~l~SR~g~~--~t~~~p~~~~~~~~~~~l~~~~~~~~~~~iLDGElv~~~~~ 105 (225)
T cd07903 28 KLLKGKPFYIETKLDGERIQLHKDGNEFKYFSRNGND--YTYLYGASLTPGSLTPYIHLAFNPKVKSCILDGEMVVWDKE 105 (225)
T ss_pred HhhcCCeEEEEEeeCceEEEEEecCCEEEEEeCCCcc--ccccccccccccccchhhhhhccccCcEEEeceEEEEEEcC
Confidence 4455779999999999999999999999999999983 3667776543210 001224679999999973211
Q ss_pred C-------------------CCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCC
Q 006472 398 D-------------------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDL 458 (643)
Q Consensus 398 ~-------------------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~ 458 (643)
+ .....+.|++||||+++|.+++++||.+|+++|++.+. +..
T Consensus 106 ~~~~~~f~~l~~~~~~~~~~~~~~~~~~~vFDiL~~~g~~l~~~pl~eR~~~L~~~~~-~~~------------------ 166 (225)
T cd07903 106 TKRFLPFGTLKDVAKLREVEDSDLQPCFVVFDILYLNGKSLTNLPLHERKKLLEKIIT-PIP------------------ 166 (225)
T ss_pred cCeeccchHHHHHHhhcccccCCccEEEEEEEEEEECCeecccCcHHHHHHHHHHhcC-CCC------------------
Confidence 1 11245789999999999999999999999999999653 210
Q ss_pred CCcEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCC
Q 006472 459 EPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARM 517 (643)
Q Consensus 459 ~pf~I~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKP~~~ 517 (643)
-.+...+....++..++.+-+...+.++.||||+|..+++|.+| ++..|+||||...
T Consensus 167 --~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~s~Y~~g~Rs~~wlK~K~~Y~ 224 (225)
T cd07903 167 --GRLEVVKRTEASTKEEIEEALNEAIDNREEGIVVKDLDSKYKPGKRGGGWIKIKPEYL 224 (225)
T ss_pred --CeEEEEEEEeCCCHHHHHHHHHHHHHcCCceEEEecCCCCCccCCcCCCcEEechhhc
Confidence 01334444444433333333334677999999999999999999 5789999999764
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=7.3e-23 Score=204.01 Aligned_cols=140 Identities=17% Similarity=0.283 Sum_probs=120.4
Q ss_pred CceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHH
Q 006472 102 GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNA 181 (643)
Q Consensus 102 ~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~ 181 (643)
.+||+|+.|++..+. ..++.++. .+|+.||+++ ++.|+++++++.||+|+++|++|+ .+|+.+
T Consensus 92 ~rfLi~~~P~~~~~~------------~yl~eLk~--~gV~~lVrlc--E~~Yd~~~~~~~GI~~~~lpipDg-~aPs~~ 154 (241)
T PTZ00393 92 IKILILDAPTNDLLP------------LYIKEMKN--YNVTDLVRTC--ERTYNDGEITSAGINVHELIFPDG-DAPTVD 154 (241)
T ss_pred eeEEEeCCCCHHHHH------------HHHHHHHH--cCCCEEEECC--CCCCCHHHHHHcCCeEEEeecCCC-CCCCHH
Confidence 499999999887442 23344543 5799999998 467899999999999999999996 799999
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhc
Q 006472 182 SVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261 (643)
Q Consensus 182 ~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~ 261 (643)
.+.+|+..+..++. +|+.|+|||++|+||||+|+|+|||+ .||++++|+++++++||+++ +..|++.|.+|...
T Consensus 155 ~i~~~l~~i~~~l~----~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~ 228 (241)
T PTZ00393 155 IVSNWLTIVNNVIK----NNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKK 228 (241)
T ss_pred HHHHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Confidence 99999987776654 78899999999999999999999998 79999999999999999987 68999999988876
Q ss_pred cCC
Q 006472 262 KRL 264 (643)
Q Consensus 262 ~~~ 264 (643)
...
T Consensus 229 ~~k 231 (241)
T PTZ00393 229 KKK 231 (241)
T ss_pred ccc
Confidence 543
No 11
>cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenylation domain binds ATP and contains many of the active site residues.
Probab=99.88 E-value=4.3e-22 Score=198.91 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=120.8
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC-------
Q 006472 327 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS------- 399 (643)
Q Consensus 327 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~------- 399 (643)
+...+|++++|+||+|++++..++++.|++|+++ .++..||+.... ......++|||||||+...++.
T Consensus 21 ~~~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~--~~t~~~p~l~~~---~~~l~~~~iLDGElv~~~~~~~~~F~~l~ 95 (207)
T cd07897 21 GDPSDWQAEWKWDGIRGQLIRRGGEVFLWSRGEE--LITGSFPELLAA---AEALPDGTVLDGELLVWRDGRPLPFNDLQ 95 (207)
T ss_pred cCcccEEEEEeEceEEEEEEEcCCEEEEEeCCCC--cccccchHHHHH---HHhCCCCeEEEeEEEEecCCCccCHHHHH
Confidence 3456899999999999999999999999999998 346788876432 1123468999999998543110
Q ss_pred -------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEec
Q 006472 400 -------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 466 (643)
Q Consensus 400 -------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K 466 (643)
...++.|++||||+++|+++++.||.+|+++|++.+. +.. .+ .+...
T Consensus 96 ~r~~~~~~~~~~~~~~~~~~~vFDil~l~g~~l~~~pl~eRr~~L~~l~~-~~~----------~~---------~i~~~ 155 (207)
T cd07897 96 QRLGRKTVGKKLLAEAPAAFRAYDLLELNGEDLRALPLRERRARLEALLA-RLP----------PP---------RLDLS 155 (207)
T ss_pred HHhcccccchhhHhhCCeEEEEEeeeeECceEhhhCCHHHHHHHHHHhhh-hcC----------CC---------ceeec
Confidence 0124789999999999999999999999999999653 210 01 13333
Q ss_pred ceeechh---HHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecC
Q 006472 467 DFWLLST---VNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYA 515 (643)
Q Consensus 467 ~~~~~~~---~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKP~ 515 (643)
++...++ +..+++ ..+.++.||||+|..+++|.+|+ +..|+|.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~---~~~~~g~EGiv~K~~~s~Y~~Grr~~~W~K~K~d 205 (207)
T cd07897 156 PLIAFADWEELAALRA---QSRERGAEGLMLKRRDSPYLVGRKKGDWWKWKID 205 (207)
T ss_pred ceEecCCHHHHHHHHH---HHHHcCCeEEEEeCCCCCcCCCCcCCCeeEeCCC
Confidence 4444443 344554 46789999999999999999996 5689999975
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.88 E-value=4.3e-22 Score=191.80 Aligned_cols=149 Identities=23% Similarity=0.305 Sum_probs=124.8
Q ss_pred ccCceeecCCCCccccccCCCCCCCC-CHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCC
Q 006472 100 IGGCIIPSKVPLSEFFNDCIPPGKRY-SFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVP 178 (643)
Q Consensus 100 I~~~flp~k~Pl~~~~~~~i~~~~~~-~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P 178 (643)
++++|++|.+|...... +.....+ .+..++..++ +.++++++.|+ .+.||++.+.+.||.++.+++.|. .+|
T Consensus 57 ~p~~~i~f~~p~~~s~g--i~~~f~~~~~~~~~~~~~--~~~v~s~vrln--~~~yd~~~f~~~Gi~h~~l~f~Dg-~tP 129 (225)
T KOG1720|consen 57 IPDRFIAFAGPHLKSRG--IESGFPLHLPQPYIQYFK--NNNVTSIVRLN--KRLYDAKRFTDAGIDHHDLFFADG-STP 129 (225)
T ss_pred ccchhhhhcCccccccc--hhhcccccCChhHHHHhh--hcccceEEEcC--CCCCChHHhcccCceeeeeecCCC-CCC
Confidence 35789999998665442 1111112 3455666665 57899999999 678999999999999999999994 899
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHH
Q 006472 179 DNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 179 ~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~ 258 (643)
+.+.+.+|++.+..-+ +++.|+|||++|+||||+|||||||+..|||+.|||+++|..||+++..+.|...+.++
T Consensus 130 ~~~~v~~fv~i~e~~~-----~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q 204 (225)
T KOG1720|consen 130 TDAIVKEFVKIVENAE-----KGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQ 204 (225)
T ss_pred CHHHHHHHHHHHHHHH-----hcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHH
Confidence 9999999998775432 38999999999999999999999999999999999999999999999999998888877
Q ss_pred Hh
Q 006472 259 YH 260 (643)
Q Consensus 259 y~ 260 (643)
+.
T Consensus 205 ~~ 206 (225)
T KOG1720|consen 205 RD 206 (225)
T ss_pred HH
Confidence 76
No 13
>PRK09247 ATP-dependent DNA ligase; Validated
Probab=99.88 E-value=2.3e-21 Score=218.46 Aligned_cols=170 Identities=22% Similarity=0.281 Sum_probs=127.0
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecC--CCC-----
Q 006472 327 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKL--PDS----- 399 (643)
Q Consensus 327 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~--~~~----- 399 (643)
+...+|++++|+||+|++++..++++.+++|+++ .++..||+.... + .....++|||||||.... ++.
T Consensus 222 ~~~~~~~~E~K~DG~R~qih~~~~~v~lfSR~g~--d~t~~fPei~~~--~-~~l~~~~ILDGElv~~~~~~~~~~~F~~ 296 (539)
T PRK09247 222 GDPADWQAEWKWDGIRVQLVRRGGEVRLWSRGEE--LITERFPELAEA--A-EALPDGTVLDGELLVWRPEDGRPQPFAD 296 (539)
T ss_pred cCCCcEEEEEeEcceEEEEEEeCCEEEEEeCCCc--cchhhhHHHHHH--H-HhCCCCEEEEeEEEEEECCCCCcCCHHH
Confidence 3446899999999999999999999999999998 447789976432 1 122467999999998541 110
Q ss_pred ---------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEE
Q 006472 400 ---------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVR 464 (643)
Q Consensus 400 ---------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~ 464 (643)
...++.|++||||++||++++++||.+|+++|++.+.. .. ++ .+.
T Consensus 297 l~~R~~rk~~~~~~~~~~pv~~~vFDiL~l~g~~l~~~Pl~eRr~~L~~~~~~-~~----------~~---------~i~ 356 (539)
T PRK09247 297 LQQRIGRKTVGKKLLADYPAFLRAYDLLEDGGEDLRALPLAERRARLEALIAR-LP----------DP---------RLD 356 (539)
T ss_pred HHHHhcccccchhhhhcCCeEEEEEEeeeeCCcchhhCCHHHHHHHHHHHhcc-cC----------CC---------eEE
Confidence 01357899999999999999999999999999997632 10 00 123
Q ss_pred ecceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecCCCceEEEEEE
Q 006472 465 RKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYARMNSVDFLFE 525 (643)
Q Consensus 465 ~K~~~~~~---~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKP~~~nTvDF~l~ 525 (643)
..+..... .+..+++ ..+.++.||||+|..+++|.+|+ +..|+|||+.. .|+|+++-
T Consensus 357 ~~~~~~~~~~~e~~~~~~---~a~~~g~EGlm~K~~~s~Y~~Grr~~~WlK~K~~~-~t~DlVvi 417 (539)
T PRK09247 357 LSPLVPFSDWDELAALRA---AARERGVEGLMLKRRDSPYLVGRKKGPWWKWKRDP-LTIDAVLM 417 (539)
T ss_pred ecCceecCCHHHHHHHHH---HHHHCCCceEEEecCCCCcCCCCCcchhhcccCCC-CcEEEEEE
Confidence 33333333 3344554 46789999999999999999997 46899999753 48999984
No 14
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=99.87 E-value=8.9e-22 Score=196.71 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=118.6
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCC-CCeEeeEEEEEecC-CC--------
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTH-HFTLLDGEMIIDKL-PD-------- 398 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~-~~tlLDGElV~d~~-~~-------- 398 (643)
..+|++++|+||.|+++++.++++.+++|++. .++..||+.... +..... .+++||||||+... +.
T Consensus 24 ~~~~~~E~K~DG~R~~~~~~~~~v~~~SR~~~--~~t~~~pel~~~--~~~~~~~~~~iLDGElv~~~~~g~~~~F~~l~ 99 (207)
T cd07901 24 GGEAAVEYKYDGIRVQIHKDGDEVRIFSRRLE--DITNALPEVVEA--VRELVKAEDAILDGEAVAYDPDGRPLPFQETL 99 (207)
T ss_pred CCcEEEEEeEcceeEEEEEeCCEEEEEeCCCc--cccchhhHHHHH--HHhcCCCCCEEEeCEEEEECCCCCccCHHHHH
Confidence 56899999999999999999999999999987 346678876421 111122 68999999998541 11
Q ss_pred -----CC-------CcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEec
Q 006472 399 -----SR-------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 466 (643)
Q Consensus 399 -----~~-------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K 466 (643)
.. ..++.|+|||||+++|++++++||.+|+++|++.+.. .. .+...
T Consensus 100 ~r~~~~~~~~~~~~~~~~~~~vFDil~~~g~~l~~~pl~eR~~~L~~~~~~-~~---------------------~i~~~ 157 (207)
T cd07901 100 RRFRRKYDVEEAAEEIPLTLFLFDILYLDGEDLLDLPLSERRKILEEIVPE-TE---------------------AILLA 157 (207)
T ss_pred HHhccccchhhhhccCcEEEEEEEEEEECCcchhcCCHHHHHHHHHHhcCc-CC---------------------cEEEE
Confidence 00 1247899999999999999999999999999986532 10 02333
Q ss_pred ceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecC
Q 006472 467 DFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYA 515 (643)
Q Consensus 467 ~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKP~ 515 (643)
++....+.+.+.+.+...+.++.||||++..+++|.+| ++..||||||.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~EGiv~K~~~s~Y~~g~Rs~~wlK~K~~ 207 (207)
T cd07901 158 PRIVTDDPEEAEEFFEEALEAGHEGVMVKSLDSPYQAGRRGKNWLKVKPD 207 (207)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCceEEEeCCCCCcCCCCCCCCeEEecCC
Confidence 34444333333332334577999999999999999999 67899999983
No 15
>cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic cor
Probab=99.87 E-value=9.9e-22 Score=193.77 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=118.3
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCC----------
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPD---------- 398 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~---------- 398 (643)
..+|++++|+||+|+++++.++++.+++|+++. ++..||..... +....+.+++||||||+...++
T Consensus 15 ~~~~~~e~K~DG~R~~i~~~~~~v~~~SR~g~~--~t~~~p~l~~~--~~~~~~~~~iLDGElv~~~~~~~~~F~~l~~~ 90 (190)
T cd07906 15 GEDWLYEIKWDGYRALARVDGGRVRLYSRNGLD--WTARFPELAEA--LAALPVRDAVLDGEIVVLDEGGRPDFQALQNR 90 (190)
T ss_pred CCCeEEEEeEceEEEEEEEECCEEEEEcCCCCc--chhhhHHHHHH--HHhcCCCCEEEEeEEEEECCCCCCCHHHHHHh
Confidence 458999999999999999999999999999984 35567764321 1011357899999999843221
Q ss_pred -------CCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeec
Q 006472 399 -------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL 471 (643)
Q Consensus 399 -------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~ 471 (643)
.....+.|+|||||+++|+++.++||.+|+++|++.+. +.. + + +.+.+....
T Consensus 91 ~~~~~~~~~~~~~~~~vFDil~~~~~~~~~~p~~eR~~~L~~~~~-~~~-----------~-------~--i~~~~~~~~ 149 (190)
T cd07906 91 LRLRRRLARTVPVVYYAFDLLYLDGEDLRGLPLLERKELLEELLP-AGS-----------P-------R--LRVSEHFEG 149 (190)
T ss_pred hcccchhcccCceEEEEEeeeeeCCcchhhCCHHHHHHHHHHHhc-cCC-----------C-------c--EEECceEcC
Confidence 11246899999999999999999999999999999663 210 0 1 223333333
Q ss_pred hhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEec
Q 006472 472 STVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKY 514 (643)
Q Consensus 472 ~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKP 514 (643)
. ...+++. .+.++.||||++..++||.+|+ +..|+|||+
T Consensus 150 ~-~~~~~~~---~~~~g~EGiv~K~~~s~Y~~g~rs~~wlK~K~ 189 (190)
T cd07906 150 G-GAALFAA---ACELGLEGIVAKRADSPYRSGRRSRDWLKIKC 189 (190)
T ss_pred C-HHHHHHH---HHHcCCcEEEEecCCCCcCCCCCCCccEEEec
Confidence 2 2456664 4678999999999999999998 899999995
No 16
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase I is required for the ligation of Okazaki fragments during lagging-strand DNA synthesis and for base excision repair (BER). DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligo
Probab=99.87 E-value=1.6e-21 Score=196.36 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=120.6
Q ss_pred hhhcccceeeeecCceeEEEEEEEC-CEEEEEeCCCccccccCCCCCcCCc-ccccccCCCCeEeeEEEEEecCC-CC--
Q 006472 325 QLLRQRYYYATWKADGTRYMMLITI-DGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLP-DS-- 399 (643)
Q Consensus 325 ~~l~~~~Y~V~eK~DG~R~ll~i~~-~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~-~~-- 399 (643)
..+...+|++++|+||.|+++++.+ +.+.|++|+++- ++-.||+.... .........++|||||||+-... +.
T Consensus 26 ~~~~~~~~~~E~K~DG~R~~~h~~~~~~v~l~SR~g~~--~t~~~pel~~~~~~~~~~~~~~~iLDGElv~~~~~~g~~~ 103 (219)
T cd07900 26 DRFEDKEFTCEYKYDGERAQIHLLEDGKVKIFSRNLEN--NTEKYPDIVAVLPKSLKPSVKSFILDSEIVAYDRETGKIL 103 (219)
T ss_pred HHhCCCeEEEEEeecceEEEEEEcCCCeEEEECCCCcc--ccchhhHHHHHHHHHhcccCccEEEeeEEEEEEcCCCCCc
Confidence 3455568999999999999999986 789999999983 46678876431 11101124689999999985321 10
Q ss_pred -----------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcE
Q 006472 400 -----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFR 462 (643)
Q Consensus 400 -----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~ 462 (643)
...++.|++||||++||++++.+||.+|+++|++.+. +.. -.
T Consensus 104 ~F~~l~~r~~~~~~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~~-~~~--------------------~~ 162 (219)
T cd07900 104 PFQVLSTRKRKDVDANDIKVQVCVFAFDLLYLNGESLLKKPLRERRELLHSLFK-EVP--------------------GR 162 (219)
T ss_pred ChHHHhhhcccccccccCcccEEEEEEEEEEECCchhhcCCHHHHHHHHHHhcC-CCC--------------------Ce
Confidence 0145789999999999999999999999999999652 210 01
Q ss_pred EEecceeech---hHHHHHHHhcccccCCCceEEEEeCC--CCCccCC-CCCeEEEecC
Q 006472 463 VRRKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWD--DPYVPRT-HEGLLKWKYA 515 (643)
Q Consensus 463 I~~K~~~~~~---~~~~ll~~~~~~l~h~~DGLIf~p~~--spY~~G~-~~~llKWKP~ 515 (643)
+...++...+ .+..+++ ..+.++.||||+|..+ ++|.+|+ +..|+|+||.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~---~~~~~g~EGiv~K~~~~~s~Y~~g~Rs~~W~K~K~d 218 (219)
T cd07900 163 FQFATSKDSEDTEEIQEFLE---EAVKNNCEGLMVKTLDSDATYEPSKRSHNWLKLKKD 218 (219)
T ss_pred EEEEEEEecCCHHHHHHHHH---HHHHcCCceEEEecCCCCCccCCCCcCCCceEeCCC
Confidence 3333344443 3445555 4678999999999999 9999985 6789999985
No 17
>cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is
Probab=99.86 E-value=2.6e-21 Score=191.41 Aligned_cols=158 Identities=21% Similarity=0.217 Sum_probs=117.1
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC---------
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS--------- 399 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~--------- 399 (643)
..+|++++|+||+|++++..++++.|++|+++ .++..||+.... +......++|||||||+-..+..
T Consensus 15 ~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~--~~t~~~p~~~~~--~~~~~~~~~iLDGElv~~~~~~~~F~~l~~r~ 90 (194)
T cd07905 15 PGGWQYEPKWDGFRCLAFRDGDEVRLQSRSGK--PLTRYFPELVAA--ARALLPPGCVLDGELVVWRGGRLDFDALQQRI 90 (194)
T ss_pred CCceEEEeeeceEEEEEEEeCCEEEEEeCCCC--chhhhhHHHHHH--HHhhCCCCEEEEeEEEEEcCCCCCHHHHHHHh
Confidence 46899999999999999999999999999998 335678875421 11112468999999998422110
Q ss_pred -----------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecce
Q 006472 400 -----------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 468 (643)
Q Consensus 400 -----------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~ 468 (643)
...+++|++||||+++|+++++.||.+|++.|++.+.. . .+. +...+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~~~-~-----------~~~---------i~~~~~ 149 (194)
T cd07905 91 HPAASRVRRLAEETPASFVAFDLLALGGRDLRGRPLRERRAALEALLAG-W-----------GPP---------LHLSPA 149 (194)
T ss_pred cccccchhhhhccCCEEEEEEeeeeeCCcccccCCHHHHHHHHHHHhcc-c-----------CCC---------eEECCc
Confidence 01347899999999999999999999999999997632 1 010 222222
Q ss_pred e-echhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecC
Q 006472 469 W-LLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYA 515 (643)
Q Consensus 469 ~-~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~ 515 (643)
. ....+..+++. .+.++.||||+|..+++|.+|+ ..|+|+||.
T Consensus 150 ~~~~~~~~~~~~~---~~~~g~EGiv~K~~~s~Y~~Gr-~~WlK~K~~ 193 (194)
T cd07905 150 TTDRAEAREWLEE---FEGAGLEGVVAKRLDGPYRPGE-RAMLKVKHR 193 (194)
T ss_pred cCCHHHHHHHHHH---HHHCCCceEEEeCCCCCcCCCC-CcEEEEecc
Confidence 2 12234556654 5679999999999999999999 699999974
No 18
>PF03919 mRNA_cap_C: mRNA capping enzyme, C-terminal domain; InterPro: IPR013846 This domain is found at the C terminus of the mRNA capping enzyme. The mRNA capping enzyme in yeasts is composed of two separate chains: alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity; PDB: 3S24_G 3RTX_A 3KYH_D 1CKN_B 1CKO_A 1CKM_B 1P16_B.
Probab=99.85 E-value=7.1e-22 Score=175.44 Aligned_cols=58 Identities=48% Similarity=0.799 Sum_probs=51.6
Q ss_pred CCCCCCCceEEEEEEeCCCCeeEEEEEecCCCCCChHHHHHHHHHhcccCCCHHHHHH
Q 006472 555 REPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLN 612 (643)
Q Consensus 555 ~~~~~~dg~IvEc~~d~~~~~W~~~R~R~DK~~pN~~~tv~~v~~SI~~~It~e~Ll~ 612 (643)
+...+++|+||||+||++.|+|+|||+|+||++||+++||.+||+||.++||+++|++
T Consensus 48 ~~~~~ld~rIVEC~~d~~~~~W~~~R~R~DK~~pN~~~t~~~v~~sI~d~Vt~e~Ll~ 105 (105)
T PF03919_consen 48 KDGQPLDGRIVECSFDNEKGQWKFMRIRDDKSTPNHISTVISVLESIEDPVTEEELLE 105 (105)
T ss_dssp CSTCCSTTCEEEEEEETTTTEEEEEEEETTSSS--BHHHHHHHHHHHHCS--HHHHHH
T ss_pred hcccccCCcEEEEEEeCCCCcEeEEEEcCCCCCCccHHHHHHHHHHHHcCCCHHHhcC
Confidence 6678899999999999989999999999999999999999999999999999999984
No 19
>cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. This group is composed of uncharacterized fungal proteins with similarity to ATP-dependent DNA ligases. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site res
Probab=99.85 E-value=9.7e-21 Score=192.15 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=122.8
Q ss_pred ccccchhhhh----hhcccceeeeecCceeEEEEEEE----CCEEEEEeCCCccccccCCCCCcCCc--cccc----c-c
Q 006472 316 PVSLNSDNLQ----LLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQMRFPCRNSN--EGLG----E-K 380 (643)
Q Consensus 316 PVslsr~~l~----~l~~~~Y~V~eK~DG~R~ll~i~----~~~vyLidR~~~~~~v~~~FP~~~~~--~~~~----~-~ 380 (643)
|-|+.-.+++ .+....|++++|+||.|+++++. ++.+.|++|+++ .++..||+.... ..+. . .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~~~~~~~~v~lfSR~~~--d~T~~~pel~~~~~~~~~~~~~~~~ 81 (235)
T cd08039 4 PKSLKARSIKHCCKMIGSRRMWVETKYDGEYCQIHIDLSKDSSPIRIFSKSGK--DSTADRAGVHSIIRKALRIGKPGCK 81 (235)
T ss_pred cchhcccCHHHHHHHhCCCcEEEEEeecceEEEEEEecccCCCEEEEEeCCCC--cccccchhHHHHHHHHhhccccccC
Confidence 5555544443 45677899999999999999987 678999999998 346678865321 1110 0 0
Q ss_pred CCCCeEeeEEEEEecC-CCC---------------------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHH
Q 006472 381 THHFTLLDGEMIIDKL-PDS---------------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLE 432 (643)
Q Consensus 381 ~~~~tlLDGElV~d~~-~~~---------------------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~ 432 (643)
..+++|||||||+-.. .+. ...++.|++||+|++||+++++.||.+|+++|+
T Consensus 82 ~~~~~ILDGEiVv~d~~~g~~~~F~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~vFDlL~lnG~~l~~~pl~eRr~~L~ 161 (235)
T cd08039 82 FSKNCILEGEMVVWSDRQGKIDPFHKIRKHVERSGSFIGTDNDSPPHEYEHLMIVFFDVLLLDDESLLSKPYSERRDLLE 161 (235)
T ss_pred CCccEEEEeEEEEEECCCCccCCHHHHHhhcccccchhccccccccccccceEEEEEEEEEECChhhhcCCHHHHHHHHH
Confidence 1367999999987532 110 002379999999999999999999999999999
Q ss_pred HHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCC------
Q 006472 433 KEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTH------ 506 (643)
Q Consensus 433 ~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~------ 506 (643)
+.+ .+..... .+. ..+.+..........+..+|+ ..+..+.||||+|..+|+|.+|+.
T Consensus 162 ~l~-~~~~~~~-~~~-----------~~~~i~~~~~~~~~~l~~~~~---~a~~~g~EGIv~K~~~S~Y~pgr~~~~~r~ 225 (235)
T cd08039 162 SLV-HVIPGYA-GLS-----------ERFPIDFSRSSGYERLRQIFA---RAIAERWEGLVLKGDEEPYFDLFLEQGSFS 225 (235)
T ss_pred Hhc-ccCCCcE-EEE-----------EEEeecccCCCCHHHHHHHHH---HHHHcCCceEEEecCCCCcccCcccccccC
Confidence 965 2211000 000 000111111111223444555 467789999999999999999986
Q ss_pred CCeEEEecC
Q 006472 507 EGLLKWKYA 515 (643)
Q Consensus 507 ~~llKWKP~ 515 (643)
..||||||.
T Consensus 226 ~~WlKlK~d 234 (235)
T cd08039 226 GCWIKLKKD 234 (235)
T ss_pred CCeEEeCCC
Confidence 699999985
No 20
>PRK07636 ligB ATP-dependent DNA ligase; Reviewed
Probab=99.85 E-value=1.5e-20 Score=195.34 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=123.0
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC---------
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS--------- 399 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~--------- 399 (643)
..+|++++|+||.|+++++.++++.|++|+++. ++..||+.... . ...+++||||||.....+.
T Consensus 17 ~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~~--~t~~fPe~~~~-~----~~~~~vLDGElv~~d~~g~~~F~~l~~r 89 (275)
T PRK07636 17 SENYITEPKFDGIRLIASKNNGLIRLYTRHNNE--VTAKFPELLNL-D----IPDGTVLDGELIVLGSTGAPDFEAVMER 89 (275)
T ss_pred CCcEEEEEEEceeEEEEEEeCCEEEEEeCCCCC--chhhhhhHHhh-h----cCCCEEEEeEEEEECCCCCCCHHHHHHH
Confidence 458999999999999999999999999999983 46688876442 1 2357999999998432111
Q ss_pred -------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeech
Q 006472 400 -------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS 472 (643)
Q Consensus 400 -------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~ 472 (643)
...++.|++||+|++||++++++||.+|+++|++.+. +. +. +...+... .
T Consensus 90 ~~~~~~~~~~~~~~~vFDlL~~~g~~l~~~pl~eRr~~L~~~~~-~~------------~~---------~~~~~~~~-~ 146 (275)
T PRK07636 90 FQSKKSTKIHPVVFCVFDVLYINGVSLTALPLSERKEILASLLL-PH------------PN---------VKIIEGIE-G 146 (275)
T ss_pred hccccccccCceEEEEEEeEEECceehhhCCHHHHHHHHHHhcC-CC------------CC---------EEEccccc-c
Confidence 0135789999999999999999999999999999763 21 11 12222222 2
Q ss_pred hHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCCceEEEEE
Q 006472 473 TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLF 524 (643)
Q Consensus 473 ~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKP~~~nTvDF~l 524 (643)
....+++. ...++.||||+|..+|+|.+| ++.+|+|.|. ..++|+.|
T Consensus 147 ~~~~~~~~---~~~~g~EGiV~K~~ds~Y~~g~Rs~~WlKiK~--~~~~e~vV 194 (275)
T PRK07636 147 HGTAYFEL---VEERELEGIVIKKANSPYEINKRSDNWLKVIN--YQYTDVLI 194 (275)
T ss_pred cHHHHHHH---HHHcCCcEEEEeCCCCCCCCCCCCCCeEEEec--CCeEEEEE
Confidence 34556664 456899999999999999999 5789999995 57999998
No 21
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the ligase domain.
Probab=99.85 E-value=1.2e-20 Score=198.64 Aligned_cols=169 Identities=22% Similarity=0.289 Sum_probs=124.8
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC---------
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS--------- 399 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~--------- 399 (643)
..+|++++|+||+|+++++.++++.|++|+++. ++..||..... +......++|||||||+....+.
T Consensus 11 ~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~~--~t~~~p~l~~~--~~~~~~~~~iLDGElv~~d~~g~~~F~~l~~r 86 (298)
T TIGR02779 11 GDDWRYEVKYDGYRCLARIEGGKVRLISRNGHD--WTEKFPILAAA--LAALPILPAVLDGEIVVLDESGRSDFSALQNR 86 (298)
T ss_pred CCCEEEEEEEceEEEEEEEeCCEEEEEeCCCCc--hHhHhHHHHHH--HHhCCCCcEEEEeEEEEECCCCCCCHHHHHhh
Confidence 457999999999999999999999999999983 45667865432 10112368999999998532211
Q ss_pred ----CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHH
Q 006472 400 ----RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVN 475 (643)
Q Consensus 400 ----~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~ 475 (643)
...++.|++||||++||++++++||.+|+++|++.+.... .+..+..........+.
T Consensus 87 ~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~l~~~~~-------------------~~~~~~~~~~~~~~~~~ 147 (298)
T TIGR02779 87 LRAGRDRPATYYAFDLLYLDGEDLRDLPLSERKKLLEELLKAIK-------------------GPLAPDRYSVHFEGDGQ 147 (298)
T ss_pred hhcCCCCceEEEEEeeeeECceehhcCCHHHHHHHHHHHhcccC-------------------CCceeEecccCchhHHH
Confidence 1145799999999999999999999999999999653210 01111110111223455
Q ss_pred HHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEE
Q 006472 476 KLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFE 525 (643)
Q Consensus 476 ~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~~~nTvDF~l~ 525 (643)
.+++. ...++.||||+|..+|+|.+|++..|+|+|+. .+.|+.|.
T Consensus 148 ~~~~~---~~~~g~EGiv~K~~ds~Y~~Grs~~WlK~K~~--~~~d~vV~ 192 (298)
T TIGR02779 148 ALLEA---ACRLGLEGVVAKRRDSPYRSGRSADWLKLKCR--RRQEFVIG 192 (298)
T ss_pred HHHHH---HHHcCCceEEEeCCCCCCCCCCCCCcEEEccC--CCCEEEEE
Confidence 66653 56799999999999999999998899999975 58898873
No 22
>PRK08224 ligC ATP-dependent DNA ligase; Reviewed
Probab=99.85 E-value=1.4e-20 Score=201.20 Aligned_cols=163 Identities=22% Similarity=0.288 Sum_probs=123.8
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC----------
Q 006472 330 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS---------- 399 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~---------- 399 (643)
.+|+++.|+||+|+++++.++++.|++|++. .++-.||+.... +......++|||||||+...++.
T Consensus 24 ~~w~~E~K~DG~R~~~~~~~~~v~l~SRng~--d~t~~fPel~~~--~~~~~~~~~vLDGEiVv~~~~~~~F~~Lq~r~~ 99 (350)
T PRK08224 24 DGWSYEPKWDGFRCLVFRDGDEVELGSRNGK--PLTRYFPELVAA--LRAELPERCVLDGEIVVARDGGLDFEALQQRIH 99 (350)
T ss_pred CcEEEEEeECeeEEEEEEECCEEEEEeCCCC--CchhhhHHHHHH--HHhhCCCCEEEeeEEEEeCCCCCCHHHHHhhhh
Confidence 4799999999999999999999999999998 346679976431 11122468999999998643210
Q ss_pred ----------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEeccee
Q 006472 400 ----------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFW 469 (643)
Q Consensus 400 ----------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~ 469 (643)
...++.|++||+|++||++++++||.+|++.|++.+. +. + + +.+.+..
T Consensus 100 ~~~~~~~~~~~~~pv~~~vFDlL~l~G~dl~~~Pl~eRr~~L~~l~~-~~------------~-------~--i~~~~~~ 157 (350)
T PRK08224 100 PAASRVRKLAEETPASFVAFDLLALGDRDLTGRPFAERRAALEAAAA-GS------------G-------P--VHLTPAT 157 (350)
T ss_pred ccccchhhhhhcCCEEEEEEeeeeECCcChhhCCHHHHHHHHHHhcC-CC------------C-------c--EEEeccc
Confidence 0134689999999999999999999999999999652 11 0 1 2222222
Q ss_pred e-chhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEE
Q 006472 470 L-LSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLF 524 (643)
Q Consensus 470 ~-~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~~~nTvDF~l 524 (643)
. ......+|+. .+.++.||||+|..+|+|.+|+.. |+|+|+ ..++||.|
T Consensus 158 ~~~~~~~~~~~~---a~~~G~EGIV~Kr~dS~Y~~Grr~-WlKiK~--~~~~d~vI 207 (350)
T PRK08224 158 TDPATARRWFEE---FEGAGLDGVIAKPLDGPYQPGKRA-MFKVKH--ERTADCVV 207 (350)
T ss_pred CCHHHHHHHHHH---HHhCCCcEEEEeCCCCCcCCCCcC-EEEEcc--CCcEEEEE
Confidence 2 2344566664 567999999999999999999876 999997 57999998
No 23
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic prophase. DNA ligase III-alpha interacts with X-ray Cross Complementing factor 1 (XRCC1) and functions in single nuc
Probab=99.84 E-value=1.8e-20 Score=188.09 Aligned_cols=158 Identities=19% Similarity=0.313 Sum_probs=113.8
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCc--ccccccCCCCeEeeEEEEEecC-CC-C------
Q 006472 330 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN--EGLGEKTHHFTLLDGEMIIDKL-PD-S------ 399 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~--~~~~~~~~~~tlLDGElV~d~~-~~-~------ 399 (643)
.+|++++|+||+|++++..++.+.+++|++.-+. ...||..... ..+ ....++|||||||+-.. .+ .
T Consensus 34 ~~~~~E~K~DG~R~~i~~~~~~v~l~SR~g~~~t-~~~~~~~~~~~~~~~--~~~~~~iLDGEiv~~d~~~g~~~~F~~l 110 (213)
T cd07902 34 NGMYAEIKYDGERVQVHKQGDNFKFFSRSLKPVL-PHKVAHFKDYIPKAF--PHGHSMILDSEVLLVDTKTGKPLPFGTL 110 (213)
T ss_pred CceEEEeccCCEEEEEEEcCCEEEEEcCCCcccc-cchhHHHHHHHHHhc--ccccceeeeeEEEEEECCCCcccccchh
Confidence 4699999999999999999899999999987321 1234432210 112 11467999999988432 11 1
Q ss_pred --------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeec
Q 006472 400 --------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL 471 (643)
Q Consensus 400 --------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~ 471 (643)
....+.|++||||+++|.+++++||.+|++.|++.+. +.. . .+.+.++...
T Consensus 111 ~~~~~~~~~~~~v~~~vFDiL~l~g~~l~~~pl~eR~~~L~~~~~-~~~------------------~--~~~~~~~~~~ 169 (213)
T cd07902 111 GIHKKSAFKDANVCLFVFDCLYYNGESLMDKPLRERRKILEDNMV-EIP------------------N--RIMLSEMKFV 169 (213)
T ss_pred hhhhccccccCceEEEEEEEeeeCCcchhcCcHHHHHHHHHHhcc-CCC------------------C--eEEEEEEEEc
Confidence 0135789999999999999999999999999998652 110 0 1333344444
Q ss_pred hh---HHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecC
Q 006472 472 ST---VNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYA 515 (643)
Q Consensus 472 ~~---~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~ 515 (643)
.+ +..+++ ....++.||||+|..+++|.+|+. .|+||||.
T Consensus 170 ~~~~~l~~~~~---~~~~~g~EGvV~K~~~s~Y~~G~r-~W~K~K~d 212 (213)
T cd07902 170 KKADDLSAMIA---RVIKEGLEGLVLKDLKSVYEPGKR-HWLKVKKD 212 (213)
T ss_pred CCHHHHHHHHH---HHHHCCCCeEEEeCCCCCccCCCC-CceEeCCC
Confidence 33 344555 456899999999999999999986 79999984
No 24
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed
Probab=99.84 E-value=4.1e-20 Score=209.67 Aligned_cols=277 Identities=18% Similarity=0.192 Sum_probs=172.3
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCc-cccccc--CCCCeEeeEEEEEecCCCC------
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEK--THHFTLLDGEMIIDKLPDS------ 399 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~--~~~~tlLDGElV~d~~~~~------ 399 (643)
..+|+++.|+||.|+++++.++++.|++|+++ .++..||+.... ..+... ....+|||||||+....+.
T Consensus 15 g~~w~~E~K~DG~R~~~h~~~~~V~L~SRng~--d~T~~fPel~~~~~~~~~~~~~~~~~ILDGEiVvld~~g~~~F~~L 92 (610)
T PRK09633 15 GDEWRYEVKYDGFRCLLIIDETGITLISRNGR--ELTNTFPEIIEFCESNFEHLKEELPLTLDGELVCLVNPYRSDFEHV 92 (610)
T ss_pred CCcEEEEEeEcceEEEEEEECCEEEEEeCCCC--cchhhhhHHHHHHHhhhhccccCCceeeeeEEEEecCCCCCCHHHH
Confidence 35799999999999999999999999999998 457789976431 111110 1136899999998432110
Q ss_pred ----------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEE
Q 006472 400 ----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRV 463 (643)
Q Consensus 400 ----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I 463 (643)
...++.|++||+|++||++++++||.+|++.|++.+.. .... ..+.. .... .+
T Consensus 93 q~R~~~~~~~~i~~~~~~~pv~~~vFDlL~lnG~dL~~~PL~eRr~~L~~ll~~-~~~~-------~~~~~-~~~~--~i 161 (610)
T PRK09633 93 QQRGRLKNTEVIAKSANARPCQLLAFDLLELKGESLTSLPYLERKKQLDKLMKA-AKLP-------ASPDP-YAKA--RI 161 (610)
T ss_pred HhhhhccccchhhhhhcccceEEEEEeecccCCcccccCCHHHHHHHHHHHhhh-cccc-------ccccc-cccc--ce
Confidence 01346899999999999999999999999999997632 1100 00000 0000 13
Q ss_pred EecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCCceEEEEEEEecCCcee--EEEEeCC
Q 006472 464 RRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLFEVTDDDRQL--LYVFERG 540 (643)
Q Consensus 464 ~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKP~~~nTvDF~l~~~~~~~~~--L~~~~~g 540 (643)
...+.+ .+...+|+. ...++.||||+|..+|+|.+| ++..|+|.|+ ..++|+.|.--..+.+. +-++++|
T Consensus 162 ~~~~~~--~~~~~l~~~---a~~~g~EGIV~Kr~dS~Y~~G~Rs~~WlKiK~--~~~~d~vI~G~~~~~g~~llgv~~~g 234 (610)
T PRK09633 162 QYIPST--TDFDALWEA---VKRYDGEGIVAKKKTSKWLENKRSKDWLKIKN--WRYVHVIVTGYDPSNGYFTGSVYKDG 234 (610)
T ss_pred EEcCCH--HHHHHHHHH---HHHcCCceEEEeCCCCCCCCCCCCCCeEEEec--cCCceeEEEEEecCCceEEEEEecCC
Confidence 333322 245667764 467899999999999999998 6889999997 46889987322111222 2234444
Q ss_pred eeeeecCceeEecC---------------CCC----CCCCceEEEEEEeCC-CCeeE---EEEEecCCCCCChHHHHHH-
Q 006472 541 KKKLMEGSSVEFTD---------------REP----SFYSGKIIECTWDPD-VQLWK---CMRIRTDKSTPNDINTYRK- 596 (643)
Q Consensus 541 ~~~~~~~~~~~f~~---------------~~~----~~~dg~IvEc~~d~~-~~~W~---~~R~R~DK~~pN~~~tv~~- 596 (643)
+-..+.....-|++ ... ...-.-|+|+.|..- .|..+ |.|+|.||+- ...++...
T Consensus 235 ~l~~vGkvgtGft~~~~~~L~~~l~~l~~~~~~~~~wV~P~LV~EV~~~e~t~g~LR~P~f~glR~DK~~-~ev~~~~~~ 313 (610)
T PRK09633 235 QLTEVGSVKHGMEDEERQTLRAIFKQNGTKTKSGEYTLEPSICVTVACITFDGGTLREPSFVSFLFDMDP-TECTYQQLQ 313 (610)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHhccCCCCCcEEEeeeEEEEEEEeecCCCeEEeeEEeEEEcCCCh-HHcchhhhh
Confidence 32111100001221 000 011236788888532 23343 7899999962 22222211
Q ss_pred -----------------HHHhcccCCCHHHHHHHHHHHhc--Cccchhhc
Q 006472 597 -----------------VMRSIRDNITEEVLLNEIQEIIR--LPMYADRI 627 (643)
Q Consensus 597 -----------------v~~SI~~~It~e~Ll~~i~~i~~--~~~~~~~~ 627 (643)
|+-- .+++|+.+|+.+-.+|.- ||-.++|.
T Consensus 314 ~~~~~~~~~v~~t~~dkv~~p-~~g~tK~dl~~Yy~~va~~~lp~l~~Rp 362 (610)
T PRK09633 314 RQLAPLPPKVEITSLDKPIWP-KIHKTKADYLLYLQEVSPFLLPFLRDRA 362 (610)
T ss_pred hhhccCCcccccCCCCceecC-CCCCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1111 257999999999887765 67666665
No 25
>PHA02587 30 DNA ligase; Provisional
Probab=99.84 E-value=1.4e-19 Score=201.79 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=121.0
Q ss_pred hhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCc-ccccc---cCCCCeEeeEEEEEecCCC
Q 006472 323 NLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGE---KTHHFTLLDGEMIIDKLPD 398 (643)
Q Consensus 323 ~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~---~~~~~tlLDGElV~d~~~~ 398 (643)
.+......+|++++|+||+|+++++.++++.+++|+++-+ + .||..... ..+.. ....++|||||||+-....
T Consensus 145 ~~~~~~~~~~~~E~K~DG~R~q~h~~~~~v~l~SR~g~~~--~-~~p~i~~~l~~~~~~~~~~~~~~VLDGElv~~~~~~ 221 (488)
T PHA02587 145 LIKKNIKFPAYAQLKADGARCFADIDADGIEIRSRNGNEY--L-GLDLLKEELKKMTAEARQRPGGVVIDGELVYVEVET 221 (488)
T ss_pred HHHhhccCcEEEEEccCceEEEEEEeCCEEEEEecCCccc--c-CChhHHHHHHHHhhhhcccCCcEEEEeEEEEEeccc
Confidence 4444233489999999999999999999999999998733 3 35654321 11100 1136899999999852100
Q ss_pred ------------------------------------------CCCcceEEEEeEeeecC---CeeccCCCHHHHHHHHHH
Q 006472 399 ------------------------------------------SRRQERRYLIYDMMAIN---QASVIERPFYERWKMLEK 433 (643)
Q Consensus 399 ------------------------------------------~~~~~~~yliFDiL~~~---G~~l~~~pf~eR~~~L~~ 433 (643)
....++.|++||+|.++ |..+..+||.+|++.|++
T Consensus 222 ~~~~~~~f~~~~~~~~~f~q~l~~R~~~~~i~~~~l~~~~~~~~~~pv~~~vFDiL~ld~y~~~~~~~~pl~eRr~~L~~ 301 (488)
T PHA02587 222 KKPNGLSFLFDDSKAKEFVGVVADRATGNGIVNKSLKGTISKEEAQEIVFQVWDIVPLEVYYGKEKSDMPYDDRFSKLAQ 301 (488)
T ss_pred CCCccchhhcccccccchhhhhhhhhhccchhhhhhccccchhhccceEEEEEEeechhhccCCccccCCHHHHHHHHHH
Confidence 00135789999999643 445778999999999999
Q ss_pred HhcCccccccccccccCCCCccCCCCCcEEEecceeec---hhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeE
Q 006472 434 EVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL---STVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLL 510 (643)
Q Consensus 434 ~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~---~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~ll 510 (643)
.+.... .+ .+...++... ..+..+++ ..+..+.||||++..+++|.+|++..|+
T Consensus 302 l~~~~~-----------~~---------~i~l~~~~~~~~~ee~~~~~~---~a~~~G~EGimlK~~ds~Y~~GRs~~Wl 358 (488)
T PHA02587 302 MFEDCG-----------YD---------RVELIENQVVNNLEEAKEIYK---RYVDQGLEGIILKNTDGLWEDGRSKDQI 358 (488)
T ss_pred HHhhcC-----------CC---------cEEEEeeEEcCCHHHHHHHHH---HHHhCCCCeEEEECCCCCCCCCCCCCcE
Confidence 763110 01 1333333333 34445555 4577899999999999999999998999
Q ss_pred EEecCCCceEEEEEE
Q 006472 511 KWKYARMNSVDFLFE 525 (643)
Q Consensus 511 KWKP~~~nTvDF~l~ 525 (643)
|||+. .|+|++|-
T Consensus 359 KiK~~--~~~dlvVv 371 (488)
T PHA02587 359 KFKEV--IDIDLEIV 371 (488)
T ss_pred EecCC--CceEEEEE
Confidence 99975 57998873
No 26
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1). All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=2.8e-20 Score=209.45 Aligned_cols=169 Identities=22% Similarity=0.355 Sum_probs=125.1
Q ss_pred ceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCc-CCc--ccccccCCCCeEeeEEEEEecC--CCC------
Q 006472 331 YYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCR-NSN--EGLGEKTHHFTLLDGEMIIDKL--PDS------ 399 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~-~~~--~~~~~~~~~~tlLDGElV~d~~--~~~------ 399 (643)
+|++++|+||.|+++++.++++.+++|+++ .++..||+. ... ..+ .....+|||||||+-.. +..
T Consensus 188 ~~~~E~K~DG~R~qih~~~~~v~l~SR~g~--~~t~~~pei~~~~~~~~~--~~~~~~ILDGElv~~d~~~g~~~~F~~l 263 (514)
T TIGR00574 188 KFYVEYKYDGERVQIHKDGDKFKIFSRRLE--NYTYAYPEIFTEFIKEAF--PGIKSCILDGEMVAIDPETGKILPFQTL 263 (514)
T ss_pred ceEEEEeecceEEEEEEcCCEEEEEcCCCc--ccccccchhHHHHHHHhc--CccceeeecceEEEEEcCCCCCcCcHhH
Confidence 899999999999999998889999999998 346678875 321 112 11356899999997532 110
Q ss_pred -------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEec
Q 006472 400 -------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 466 (643)
Q Consensus 400 -------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K 466 (643)
...++.|++||||++||++++++||.+|+++|++.+ .+.. + .+...
T Consensus 264 ~~r~~~~~~~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~-~~~~-----------~---------~i~~~ 322 (514)
T TIGR00574 264 LRRKRRYDIDSMEKKVPVCLFVFDILYLNGESLIDEPLIERREILESIL-KPIP-----------N---------RIEIA 322 (514)
T ss_pred HhhhhhccccccccccceEEEEEEEEEECCcchhcCcHHHHHHHHHHhc-cCCC-----------C---------cEEEE
Confidence 013578999999999999999999999999999855 3211 0 13333
Q ss_pred ceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecC----CCceEEEEE
Q 006472 467 DFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYA----RMNSVDFLF 524 (643)
Q Consensus 467 ~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKP~----~~nTvDF~l 524 (643)
+.....+.+++.+.|...+.++.||||+|..+++|.+| ++..|+||||. ...|+|++|
T Consensus 323 ~~~~~~~~e~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~y~~~~~~~~D~vv 385 (514)
T TIGR00574 323 EMKITSNVEELEKFLNEAISEGCEGLMLKDLKSIYEPGKRGWLWLKFKPEYLEGMGDTLDLVV 385 (514)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCceEEEecCCCcccCCCCCCcceeCchhhcccccCceeEEE
Confidence 44444443433333335678999999999999999999 67899999984 246999987
No 27
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed
Probab=99.82 E-value=7.5e-20 Score=204.74 Aligned_cols=163 Identities=21% Similarity=0.302 Sum_probs=123.3
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCc-ccccccCCCCeEeeEEEEEecCCCC---------
Q 006472 330 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS--------- 399 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~--------- 399 (643)
.+|++++|+||.|++++..++++.+++|+++ .++..||+.... ..+ ...++|||||||.-...+.
T Consensus 204 ~~~~~E~K~DG~R~qih~~~~~v~l~SR~~~--d~T~~fPei~~~~~~~---~~~~~ILDGElv~~d~~g~~~~F~~l~~ 278 (508)
T PRK03180 204 GPAAVEAKLDGARVQVHRDGDDVRVYTRTLD--DITARLPEVVEAVRAL---PVRSLVLDGEAIALRPDGRPRPFQVTAS 278 (508)
T ss_pred CCeEEEEEEceeEEEEEEECCEEEEEeCCCC--cchhhhHHHHHHHHhC---CCcceeecceEEEECCCCCcCCHHHHHH
Confidence 4799999999999999999999999999998 456789876431 111 1367999999998432110
Q ss_pred ------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecc
Q 006472 400 ------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKD 467 (643)
Q Consensus 400 ------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~ 467 (643)
...++.|++||+|++||++++++||.+|++.|++.+. +.. ..+ .+..
T Consensus 279 R~~~k~~~~~~~~~~pv~~~~FDlL~l~G~dl~~~pl~eRr~~L~~~~~-~~~---------~~~---------~~~~-- 337 (508)
T PRK03180 279 RFGRRVDVAAARATQPLSPFFFDALHLDGRDLLDAPLSERLAALDALVP-AAH---------RVP---------RLVT-- 337 (508)
T ss_pred HhccccchhhhcccCceEEEEEeehhcCCcchhcCCHHHHHHHHHHhhc-ccc---------ccc---------ceec--
Confidence 0134789999999999999999999999999999763 210 000 0111
Q ss_pred eeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecCCCceEEEEE
Q 006472 468 FWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYARMNSVDFLF 524 (643)
Q Consensus 468 ~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKP~~~nTvDF~l 524 (643)
.....+..+++. ...++.||||+|..+++|.+|+ +..|+|||+. .|+|++|
T Consensus 338 -~~~~~~~~~~~~---a~~~g~EGlm~K~~ds~Y~~GrR~~~WlK~K~~--~t~D~Vv 389 (508)
T PRK03180 338 -ADPAAAAAFLAA---ALAAGHEGVMVKSLDAPYAAGRRGAGWLKVKPV--HTLDLVV 389 (508)
T ss_pred -CCHHHHHHHHHH---HHHcCCceEEEeCCCCCcCCCCCCCCcEEEcCC--CceEEEE
Confidence 112345556653 5779999999999999999996 5799999984 6999998
No 28
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=99.82 E-value=1.9e-19 Score=175.72 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=133.3
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCcc-ccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCCCCcceEEE
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNF-RRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYL 407 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~-~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~~~~~~yl 407 (643)
..+|+|..-.-|+||||++..+.++++||+|.. ...+..||.... .+++|||+|.|..-+. ...+|+
T Consensus 20 ~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~g~~~~~f~s~lP~g~~----------~~~~~g~tILDci~~~--~~~~yy 87 (186)
T cd09232 20 SEEWLVVPCPVGKRCLVVASKGKTVARSKNGRTLHRFSSALPGGSR----------KTSNSGYTILDCIYNE--DDRTYY 87 (186)
T ss_pred CcceEEEECcCceEEEEEEeCCEEEEEeCCCCEEEecccCCCCCCc----------CCCCCCCEEEEEecCC--CCCEEE
Confidence 458999999999999999999999999999974 444566664422 1177888888865433 357999
Q ss_pred EeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcccc--
Q 006472 408 IYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL-- 485 (643)
Q Consensus 408 iFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~~~~l-- 485 (643)
|+|||+++|.++.+.++.-|+..|++.+.+++.... ....++|.++.++|++... +.|-+.+...+
T Consensus 88 VlDii~w~g~~l~d~~~~~Rf~wl~skl~E~~~~~~-----------~~~~~~~~f~~~p~~~~~~-~~l~~~~~~~~~~ 155 (186)
T cd09232 88 VLDVLCWNGHPLYDCETEFRFFWLRSKLEELPELDE-----------PSEKNPFRFVPLPYFPCTK-ESLQSAYSGPLND 155 (186)
T ss_pred EEEEeeeCCcccccCCcchhHHHHHhhCCCcccccc-----------ccccCCceEEecCcccCcH-HHHHHHHhccccc
Confidence 999999999999999999999999999987753221 1346799999999999987 44445566777
Q ss_pred -cCCCceEEEEeCCCCCccCCCCCeEEEecC
Q 006472 486 -SHDADGLVFQGWDDPYVPRTHEGLLKWKYA 515 (643)
Q Consensus 486 -~h~~DGLIf~p~~spY~~G~~~~llKWKP~ 515 (643)
.|+.|||+|++.++.|++|+++.++||||.
T Consensus 156 ~~~e~DGLlFyhk~~~Y~~G~tPlvl~wKp~ 186 (186)
T cd09232 156 DPYELDGLLFYHKESHYTPGSTPLVLWLKDY 186 (186)
T ss_pred CCCCCceEEEEeCCCcccCcCCCcEEEecCC
Confidence 899999999999999999999999999983
No 29
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.81 E-value=1.8e-19 Score=168.01 Aligned_cols=113 Identities=19% Similarity=0.359 Sum_probs=97.5
Q ss_pred CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~l 218 (643)
.+|++||||+.+...+. ..|++|+++|+.|... ..+..++..+.+||+.....+++|+|||.+|+||||++
T Consensus 25 ~gi~~Vi~l~~~~~~~~-----~~~~~~~~ipi~D~~~----~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 95 (138)
T smart00195 25 LGITHVINVTNEVPNLN-----KKGFTYLGVPILDNTE----TKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATL 95 (138)
T ss_pred cCCCEEEEccCCCCCCC-----CCCCEEEEEECCCCCC----CChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHH
Confidence 58999999997654432 4689999999998422 22445677788899887788999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHh
Q 006472 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 260 (643)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~ 260 (643)
++||||...||++++|++.++++||.+.++++|+.+|..++.
T Consensus 96 ~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 96 IIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764
No 30
>PLN03113 DNA ligase 1; Provisional
Probab=99.81 E-value=2.1e-19 Score=206.76 Aligned_cols=175 Identities=18% Similarity=0.237 Sum_probs=127.4
Q ss_pred hhhhcccceeeeecCceeEEEEEEE-CCEEEEEeCCCccccccCCCCCcCCc-ccccccCCCCeEeeEEEEEecCCCC--
Q 006472 324 LQLLRQRYYYATWKADGTRYMMLIT-IDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS-- 399 (643)
Q Consensus 324 l~~l~~~~Y~V~eK~DG~R~ll~i~-~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~-- 399 (643)
+..+...+|++++|+||.|++++.. ++++.+++|+++ .++-.||+.... ..+......++|||||+|+-...+.
T Consensus 385 l~~~~g~~~~~E~KyDGeR~QiH~~~~g~v~lfSRn~e--d~T~~fPel~~~~~~~~~~~~~~~ILDGEiVa~d~~~~~~ 462 (744)
T PLN03113 385 VNKFQDMEFTCEYKYDGERAQIHFLEDGSVEIYSRNAE--RNTGKYPDVVVAISRLKKPSVKSFILDCELVAYDREKKKI 462 (744)
T ss_pred hhccCCCCEEEEEeeccceEEEEEecCCEEEEEeCCCC--cccccchhHHHHHHHhccccCCCEEEEeEEEEEECCCCCc
Confidence 3445566899999999999999975 568999999998 447889986431 1111111367999999998542111
Q ss_pred ------------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCc
Q 006472 400 ------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPF 461 (643)
Q Consensus 400 ------------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf 461 (643)
.+.++.|++||||++||++++++||.+|+++|++.+.. .. +
T Consensus 463 lpFq~Lq~R~rk~~~~~~~~~pv~~~aFDlLylnG~~L~~~PL~eRR~~L~~~~~~-~~-----------~--------- 521 (744)
T PLN03113 463 LPFQILSTRARKNVVMSDIKVDVCIFAFDMLYLNGQPLIQEQLKIRREHLYESFEE-DP-----------G--------- 521 (744)
T ss_pred CCHHHHHhhhccccchhccccceEEEEEeccccCccChhcCCHHHHHHHHHHHhcc-CC-----------C---------
Confidence 01356899999999999999999999999999996632 10 0
Q ss_pred EEEecceeec---hhHHHHHHHhcccccCCCceEEEEeC--CCCCccC-CCCCeEEEecCCC----ceEEEEE
Q 006472 462 RVRRKDFWLL---STVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYARM----NSVDFLF 524 (643)
Q Consensus 462 ~I~~K~~~~~---~~~~~ll~~~~~~l~h~~DGLIf~p~--~spY~~G-~~~~llKWKP~~~----nTvDF~l 524 (643)
.+.+.+.... ..+..+|+ ..+.++.||||+|.. +++|.+| |+..|||||+..+ .|+|+++
T Consensus 522 ~i~~~~~~~~~~~ee~~~~~~---~ai~~g~EGlmvK~l~~dS~Y~pGkRs~~WlKlK~dy~~~~~dtlDlVv 591 (744)
T PLN03113 522 FFQFATAITSNDLEEIQKFLD---AAVDASCEGLIIKTLNKDATYEPSKRSNNWLKLKKDYMESIGDSLDLVP 591 (744)
T ss_pred cEEEeeeeccCCHHHHHHHHH---HHHHcCCceEEEeccCCCCCccCCCCCCCeEEEechhhccccccccEEE
Confidence 1233333332 34455555 467899999999985 7899999 4789999998765 5999986
No 31
>PRK01109 ATP-dependent DNA ligase; Provisional
Probab=99.81 E-value=2.1e-19 Score=205.04 Aligned_cols=166 Identities=17% Similarity=0.286 Sum_probs=124.8
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccC-CCCeEeeEEEEEec-CCCCC-------
Q 006472 330 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKT-HHFTLLDGEMIIDK-LPDSR------- 400 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~-~~~tlLDGElV~d~-~~~~~------- 400 (643)
.+|++++|+||.|+++++.++++.+++|+++ .++..||+.... +.... ..++|||||||+-. ..+..
T Consensus 248 ~~~~~E~K~DG~R~qih~~~~~v~l~SR~~~--d~T~~~pel~~~--~~~~~~~~~~ILDGElv~~d~~~g~~~~F~~l~ 323 (590)
T PRK01109 248 GEALVEYKYDGERAQIHKKGDKVKIFSRRLE--NITHQYPDVVEY--AKEAIKAEEAIVEGEIVAVDPETGEMRPFQELM 323 (590)
T ss_pred CCeEEEecCCceEEEEEEcCCEEEEEeCCch--hhccccchHHHH--HHHhcCccceEEeeeEEEEECCCCcccChHHHh
Confidence 4799999999999999999999999999987 447789986431 11112 36899999999853 11110
Q ss_pred -------------CcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecc
Q 006472 401 -------------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKD 467 (643)
Q Consensus 401 -------------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~ 467 (643)
..++.|++||||++||++++++||.+|+++|++.+.. .. . +...+
T Consensus 324 ~R~r~~~~~~~~~~~p~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~~~-~~-------------------~--~~~~~ 381 (590)
T PRK01109 324 HRKRKYDIEEAIKEYPVNVFLFDLLYVDGEDLTDKPLPERRKKLEEIVKE-ND-------------------K--VKLAE 381 (590)
T ss_pred hcccccchhhhcccCceEEEEEEEEEECCcchhhCcHHHHHHHHHHhcCC-CC-------------------c--eEEee
Confidence 1256899999999999999999999999999996532 10 0 22333
Q ss_pred eeech---hHHHHHHHhcccccCCCceEEEEeC--CCCCccC-CCCCeEEEecC----CCceEEEEE
Q 006472 468 FWLLS---TVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYA----RMNSVDFLF 524 (643)
Q Consensus 468 ~~~~~---~~~~ll~~~~~~l~h~~DGLIf~p~--~spY~~G-~~~~llKWKP~----~~nTvDF~l 524 (643)
....+ ++..+|+ ....++.||||+|.. +++|.+| |+..|+|+|+. ...|+|++|
T Consensus 382 ~~~~~~~~~~~~~~~---~a~~~g~EGiv~K~~~~ds~Y~~g~Rs~~WlK~K~dy~~~~~~~~Dlvv 445 (590)
T PRK01109 382 RIITDDVEELEKFFH---RAIEEGCEGLMAKSLGKDSIYQAGARGWLWIKYKRDYQSEMADTVDLVV 445 (590)
T ss_pred eEecCCHHHHHHHHH---HHHHcCCceEEEecCCCCCCcCCCCCCccHHHhhHHhhcccCCceeEEE
Confidence 33333 3444554 467899999999999 9999999 57899999973 456899887
No 32
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.81 E-value=1.3e-19 Score=167.77 Aligned_cols=116 Identities=23% Similarity=0.365 Sum_probs=97.9
Q ss_pred CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~l 218 (643)
.+|.+|||++.+.+.. ......+++|+++|+.|.... .+..++..+.+||+++...+++|+|||.+|+||||++
T Consensus 17 ~~I~~Vin~~~~~~~~--~~~~~~~~~~~~i~~~D~~~~----~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 90 (133)
T PF00782_consen 17 LGITHVINLQEECPNP--YFYKPEGIEYLRIPIDDDPEE----PILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAV 90 (133)
T ss_dssp TTEEEEEECSSSSSTS--HHHTTTTSEEEEEEEESSTTS----HGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHH
T ss_pred CCCCEEEEccCCCcCc--hhcccCCCEEEEEEecCCCCc----chHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHH
Confidence 6899999999765432 334567999999999884233 3344555666788777778999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHh
Q 006472 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 260 (643)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~ 260 (643)
+|||||...+|++++|++.+++.||.+.+++.|+++|..++.
T Consensus 91 ~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 91 AAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999875
No 33
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=99.81 E-value=2e-19 Score=178.46 Aligned_cols=166 Identities=24% Similarity=0.389 Sum_probs=116.5
Q ss_pred hhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCc-ccccccCCCCeEeeEEEEEec-CCC---
Q 006472 324 LQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDK-LPD--- 398 (643)
Q Consensus 324 l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~-~~~--- 398 (643)
+..+ ..+|++++|+||.|++++..++++.+++|++..+ +..||+.... .........+++||||||.-. ..+
T Consensus 14 ~~~~-~~~~~~e~K~DG~R~~i~~~~~~v~~~SR~g~~~--~~~~~~l~~~l~~~~~~~~~~~vLDGElv~~d~~~~~~~ 90 (202)
T PF01068_consen 14 LKKF-GGPWYVEPKYDGVRCQIHKDGGGVRLFSRNGKDI--TSQFPELAEALRELLFPDGPDFVLDGELVVLDPNTGSPL 90 (202)
T ss_dssp HHHT-TSCEEEEEEESSEEEEEEEETTEEEEEETTSSB---GGGHHHHHHHHHHHBCTSCTEEEEEEEEEEBETTTSSBC
T ss_pred HHhc-CCCeEEEEeEeeEEeeeeeccccceeecccccch--hhHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCcch
Confidence 3444 6789999999999999999999999999999832 3345543210 010011134699999999821 110
Q ss_pred ------------CC-----CcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCc
Q 006472 399 ------------SR-----RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPF 461 (643)
Q Consensus 399 ------------~~-----~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf 461 (643)
.. ...+.|++||+|+++|.+++++||.+|+++|++.+..+. +
T Consensus 91 ~f~~~~~~~~~~~~~~~~~~~~~~~~vFDil~l~~~~l~~~p~~eR~~~L~~~~~~~~------------~--------- 149 (202)
T PF01068_consen 91 PFQELSGRLNRRSKKIPEQSEPLQFVVFDILYLDGKDLLDLPYEERRELLEELLEPPP------------P--------- 149 (202)
T ss_dssp CHHHHHHHHBHSSSCHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBG-BT------------S---------
T ss_pred hHHHHhhhhhhhcccchhccCcEEEEEEEEEEeCCeEeeeccHHHHHHHHHHhhccCC------------C---------
Confidence 00 146899999999999999999999999999999762111 0
Q ss_pred EEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCC-CCeEEEe
Q 006472 462 RVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTH-EGLLKWK 513 (643)
Q Consensus 462 ~I~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~-~~llKWK 513 (643)
.+...+.+...+.+++.+-+...+..+.||||++..+++|.+|+. ..|+|+|
T Consensus 150 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkrs~~w~K~K 202 (202)
T PF01068_consen 150 RIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKRSSGWLKVK 202 (202)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEEEEEEEEEE
T ss_pred ceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCcCCCcEEEC
Confidence 134444555544444333333467789999999999999999975 8999998
No 34
>PRK09632 ATP-dependent DNA ligase; Reviewed
Probab=99.79 E-value=1.2e-18 Score=200.36 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=126.4
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCc-ccccccCCCCeEeeEEEEEecCCCC------
Q 006472 327 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS------ 399 (643)
Q Consensus 327 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~------ 399 (643)
+...+|+++.|+||+|+++++.++++.|++|+++ .++..||+.... ..+ ...++|||||||+....+.
T Consensus 474 ~~~~~w~~E~K~DG~R~~~~~~~g~vrL~SRnG~--d~T~~fPel~~~~~~l---~~~~~ILDGEiVvld~~G~~~F~~L 548 (764)
T PRK09632 474 LKASQWAFEGKWDGYRLLAEADHGALRLRSRSGR--DVTAEYPELAALAEDL---ADHHVVLDGEIVALDDSGVPSFGLL 548 (764)
T ss_pred CCCCCEEEEEEECceeEEEEEeCCEEEEEeCCCC--CccccchhHHHHHhhC---CCcceeeeeEEEEeCCCCCCCHHHH
Confidence 3456899999999999999999999999999998 346789976432 122 1258999999998533221
Q ss_pred ----CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHH
Q 006472 400 ----RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVN 475 (643)
Q Consensus 400 ----~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~ 475 (643)
...++.|++||+|++||++++++||.+|+++|++.+... + .+...+.+.. +..
T Consensus 549 q~r~~~~~v~y~vFDLL~lnG~dL~~~Pl~eRR~~L~~l~~~~-------------~---------~i~~s~~~~~-~~~ 605 (764)
T PRK09632 549 QNRGRDTRVEFWAFDLLYLDGRSLLRKPYRDRRKLLEALAPSG-------------G---------SLTVPPLLPG-DGA 605 (764)
T ss_pred hhhhhcCCeEEEEEeeeccCCcccccCCHHHHHHHHHHhhCCC-------------C---------cEEecceecc-cHH
Confidence 113589999999999999999999999999999966311 0 0233333332 345
Q ss_pred HHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecCCCceEEEEE
Q 006472 476 KLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYARMNSVDFLF 524 (643)
Q Consensus 476 ~ll~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKP~~~nTvDF~l 524 (643)
.+|+. ...++.||||+|..+|+|.+|+ +..|+|+|+. .+.||+|
T Consensus 606 ~~l~~---a~~~GlEGIVaKr~dS~Y~pGrRs~~WlKiK~~--~~~e~VI 650 (764)
T PRK09632 606 EALAY---SRELGWEGVVAKRRDSTYQPGRRSSSWIKDKHW--RTQEVVI 650 (764)
T ss_pred HHHHH---HHHcCCcEEEEeCCCCCCCCCCcCCCeEEEecC--CceEEEE
Confidence 66664 5678999999999999999996 7899999975 5899987
No 35
>COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.5e-18 Score=190.72 Aligned_cols=166 Identities=22% Similarity=0.251 Sum_probs=124.8
Q ss_pred ceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCC-cCCc-ccccccCCCCeEeeEEEEEecCCCC---------
Q 006472 331 YYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPC-RNSN-EGLGEKTHHFTLLDGEMIIDKLPDS--------- 399 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~-~~~~-~~~~~~~~~~tlLDGElV~d~~~~~--------- 399 (643)
+|.+++|+||.|+++++.++++.|++|++. .++-.||. .... ..+ ...++|||||+|+....+.
T Consensus 134 ~w~~E~K~DG~R~q~h~~~~~vrl~SR~g~--d~T~~fP~~~~~~~~~l---~~~~~iiDGE~V~~~~~~~~~F~~Lq~r 208 (444)
T COG1793 134 DWAYEEKFDGYRVQIHIDGGKVRLYSRNGE--DWTGRFPDILEAAAEAL---PADDFILDGEIVVLDEEGRLDFQALQQR 208 (444)
T ss_pred CEEEEEeeceEEEEEEEcCCEEEEEeCCCc--cchhhChHHHHHHHhcC---CCCceEEeeeEEEECCCCCCCHHHHHHH
Confidence 699999999999999999999999999998 45778993 2211 111 2357999999999643110
Q ss_pred -----------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecce
Q 006472 400 -----------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 468 (643)
Q Consensus 400 -----------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~ 468 (643)
...++.|++||+|+++|++++.+||.+|++.|++.+..... . ...+ .+. +
T Consensus 209 ~~~k~~v~~~~~~~~~~~~aFDlL~~dG~dL~~~pl~eRr~~Le~lv~~~~~--~-----~~~~---------~i~---~ 269 (444)
T COG1793 209 LRRKYDVAKLRRETPLVLFAFDLLYLDGEDLRGLPLEERRALLEELVKSSDK--I-----EIAE---------RIP---F 269 (444)
T ss_pred hhhccchhhhccCCceEEEEEEEEeECCcccccCchHHHHHHHHHHhccccc--c-----cccc---------cee---c
Confidence 11357899999999999999999999999999997753200 0 0000 122 2
Q ss_pred eechhHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCCceEEEEEE
Q 006472 469 WLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLFE 525 (643)
Q Consensus 469 ~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKP~~~nTvDF~l~ 525 (643)
........+|+. ...++.||||.|..++||.+| +...|+|||+. .|.||.|.
T Consensus 270 ~~~~~~~~~~~~---a~~~g~EGvv~K~~ds~Y~~g~R~~~W~K~K~~--~~~d~vv~ 322 (444)
T COG1793 270 SDAEEGEAFLEA---AIELGLEGVVAKRPDSPYRAGGRSNKWLKVKRD--ETLDLVVV 322 (444)
T ss_pred cChhhHHHHHHH---HHhcCceEEEEeCCCCCcCCCCCCCcceEeccC--CcccEEEE
Confidence 333455566663 577899999999999999965 58999999986 89999983
No 36
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed
Probab=99.78 E-value=2.2e-18 Score=200.05 Aligned_cols=166 Identities=20% Similarity=0.242 Sum_probs=126.5
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC----------
Q 006472 330 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS---------- 399 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~---------- 399 (643)
.+|+++.|+||+|+++++.++++.|++|+++ ..+-.||+.... +..-....+|||||||+....+.
T Consensus 249 ~~W~~E~K~DG~R~~a~~~gg~vrL~SRnG~--d~T~~fPel~~~--~~~l~~~~~ILDGEIVvld~~G~~~F~~Lq~r~ 324 (860)
T PRK05972 249 DGWIYEIKFDGYRILARIEGGEVRLFTRNGL--DWTAKLPALAKA--AAALGLPDAWLDGEIVVLDEDGVPDFQALQNAF 324 (860)
T ss_pred CceEEEeeeCcEEEEEEEECCEEEEEeCCCC--ccccccHHHHHH--HHhcCCCceeEeEEEEEECCCCCCCHHHHHHHh
Confidence 5899999999999999999999999999998 346778876432 11112367899999998532221
Q ss_pred ---CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHH
Q 006472 400 ---RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNK 476 (643)
Q Consensus 400 ---~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ 476 (643)
....+.|++||||++||++++++||.+|+++|++.+... .++ .|++.+.+.. ....
T Consensus 325 ~~~~~~~v~f~vFDLL~l~G~dL~~~PL~eRr~~L~~ll~~~-----------~~~---------~i~~s~~~~~-~g~~ 383 (860)
T PRK05972 325 DEGRTEDLVYFAFDLPFLGGEDLRELPLEERRARLRALLEAA-----------RSD---------RIRFSEHFDA-GGDA 383 (860)
T ss_pred hccCCCceEEEEEeccccCCcccccCCHHHHHHHHHHHhhhc-----------CCC---------cEEEeceecc-hHHH
Confidence 113578999999999999999999999999999966321 011 1444444443 2355
Q ss_pred HHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEE
Q 006472 477 LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFE 525 (643)
Q Consensus 477 ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~~~nTvDF~l~ 525 (643)
+|+. .+.++.||||+|..+|+|.+|++.+|||+|+. .+.+|+|.
T Consensus 384 ll~~---a~~~GlEGIVaKr~dS~Y~~GRs~~WlKiK~~--~~~E~VIg 427 (860)
T PRK05972 384 VLAS---ACRLGLEGVIGKRADSPYVSGRSEDWIKLKCR--ARQEFVIG 427 (860)
T ss_pred HHHH---HHHcCCceEEEeCCCCCCCCCCCCCcEEEecC--CCceEEEE
Confidence 6764 56789999999999999999999999999975 56788873
No 37
>PHA00454 ATP-dependent DNA ligase
Probab=99.78 E-value=4.9e-18 Score=180.06 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=127.3
Q ss_pred CCCc-ccccchhhhhhhcc-c-ceeeeecCceeEEEEEEECCE-EEEEeCCCccccccCCCCCcCCcc-------cccc-
Q 006472 312 PGSH-PVSLNSDNLQLLRQ-R-YYYATWKADGTRYMMLITIDG-CYLIDRCFNFRRVQMRFPCRNSNE-------GLGE- 379 (643)
Q Consensus 312 PGsq-PVslsr~~l~~l~~-~-~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~~v~~~FP~~~~~~-------~~~~- 379 (643)
|+++ .|+|+.+++..... . .|+++.|+||+|+++++.+++ +.|++|+++ .||...... .+.+
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~~g~~~~E~K~DG~R~~~~~~~~~~v~l~SR~g~------~~p~l~~~~~~~~~~~~~~~~ 79 (315)
T PHA00454 6 TNPFRAVDFNESAIEKALEKAGYLIADVKYDGVRGNIVVDNTADHGWLSREGK------TIPALEHLNGFDRRWAKLLND 79 (315)
T ss_pred CCccccccCCHHHHHHHHHhCCcEEEEEccceEEEEEEEcCCCeEEEEeCCCC------cccchhhhhhhhhhhhhhhhh
Confidence 5555 78999999976543 3 455555999999999998765 999999996 245432110 0000
Q ss_pred ---cCCCCeEeeEEEEEecCCC----------------CCCcceEEEEeEeeecC----Ceec---cCCCHHHHHHHHHH
Q 006472 380 ---KTHHFTLLDGEMIIDKLPD----------------SRRQERRYLIYDMMAIN----QASV---IERPFYERWKMLEK 433 (643)
Q Consensus 380 ---~~~~~tlLDGElV~d~~~~----------------~~~~~~~yliFDiL~~~----G~~l---~~~pf~eR~~~L~~ 433 (643)
....+++||||+|+...+. ....++.|++||+|++| |.++ ..+||.+|.++|++
T Consensus 80 ~~~~l~~~~vLDGElv~~~~~f~~~~~~l~~k~~~~~~~~~~~v~~~vFDll~l~~~~~g~~l~~l~~~pl~~Rr~~L~~ 159 (315)
T PHA00454 80 DRCIFPDGFMLDGELMVKGVDFNTGSGLLRRKWKVLFELHLKKLHVVVYDVTPLDVLESGEDYDVMSLLMYEHVRAMVPL 159 (315)
T ss_pred hhhcCCCCeEEEEEEEecCCCHHHHHHHhccCccchhhhccCceEEEEEEeeEeccccCCccccccccccHHHHHHHHHH
Confidence 0124789999999853211 01135889999999999 6665 78999999999998
Q ss_pred HhcCccccccccccccCCCCccCCCCCcEEEecceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeE
Q 006472 434 EVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLL 510 (643)
Q Consensus 434 ~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~---~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~ll 510 (643)
.+. +.. . ..++..+.+..+ ....+++ ....++.||||+|..+++|.+|+...|+
T Consensus 160 l~~-~~~------------~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~EGiv~K~~ds~Y~~Grr~~~~ 216 (315)
T PHA00454 160 LME-YFP------------E-------IDWFLSESYEVYDMESLQELYE---KKRAEGHEGLVVKDPSLIYRRGKKSGWW 216 (315)
T ss_pred HHh-hCC------------C-------cceEeeceEEcCCHHHHHHHHH---HHHhCCCceEEEeCCCCCCCCCCccCcE
Confidence 542 110 0 013444455443 4445555 4678999999999999999999876788
Q ss_pred EEecCCCceEEEEE
Q 006472 511 KWKYARMNSVDFLF 524 (643)
Q Consensus 511 KWKP~~~nTvDF~l 524 (643)
|+|+. .|+|++|
T Consensus 217 K~K~~--~~~d~vI 228 (315)
T PHA00454 217 KMKPE--CEADGTI 228 (315)
T ss_pred EEccc--CceeEEE
Confidence 99975 5999997
No 38
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.77 E-value=2.6e-18 Score=160.02 Aligned_cols=118 Identities=20% Similarity=0.267 Sum_probs=106.2
Q ss_pred CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~l 218 (643)
.+|..|||.|-+.+... + .||+|.++|+.|. | ...+..|++.+.+-|+.....|+..||||.||++||+++
T Consensus 41 ~~It~IiNat~E~pn~~---l--~~~qy~kv~~~D~---p-~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsL 111 (198)
T KOG1718|consen 41 RKITCIINATTEVPNTS---L--PDIQYMKVPLEDT---P-QARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASL 111 (198)
T ss_pred cCceEEEEcccCCCCcc---C--CCceeEEEEcccC---C-cchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHH
Confidence 68999999997654422 2 4899999999985 4 367899999999999988889999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCCC
Q 006472 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLD 265 (643)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~ 265 (643)
+.+|||+..+|++.||..+++.+||.+-+|.+|++||..|++.+..+
T Consensus 112 ClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 112 CLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred HHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999987754
No 39
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.75 E-value=1.7e-17 Score=154.46 Aligned_cols=113 Identities=16% Similarity=0.320 Sum_probs=94.3
Q ss_pred CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~l 218 (643)
.+|++||||+.+... ......|++|+++|+.|.+ .+. +...+..+.+||......+++|+|||.+|.||||++
T Consensus 26 ~gi~~VI~l~~~~~~---~~~~~~~~~~~~~~~~D~~-~~~---~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 26 LGITHVLNVAKEVPN---ENLFLSDFNYLYVPILDLP-SQD---ISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred cCCCEEEEcccCCCC---cccCCCCceEEEEEceeCC-CCC---hHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHH
Confidence 689999999976543 3344579999999999863 222 233455556777766667899999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHH
Q 006472 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~ 258 (643)
+++|||..++|++++|++.+++.||...++++|+.+|..|
T Consensus 99 ~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~ 138 (139)
T cd00127 99 VIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEY 138 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876
No 40
>PRK09125 DNA ligase; Provisional
Probab=99.75 E-value=5.7e-17 Score=169.01 Aligned_cols=208 Identities=24% Similarity=0.315 Sum_probs=133.0
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecC-----------C
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKL-----------P 397 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~-----------~ 397 (643)
..+|++++|+||+|++. +++.|++|+++- ++ -|.... .. ..+++||||+|.-.. .
T Consensus 42 ~~~~~~E~K~DG~R~~~----~~v~l~SR~g~~--it--~p~~~~-~~-----~~~~vLDGElv~~~~~F~~l~~r~~~k 107 (282)
T PRK09125 42 ISGYLVSEKLDGVRAYW----DGKQLLTRQGNP--IA--APAWFT-AG-----FPPFPLDGELWAGRGQFEAISSIVRDK 107 (282)
T ss_pred hhhEEEEeeeeeEeEEE----CCeEEEcCCCCc--CC--CchhHH-hc-----CCCccEeEEEEeCCCCHHHHHHHHccC
Confidence 35899999999999962 468899999872 12 132111 11 247899999997311 0
Q ss_pred CCC---CcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeech--
Q 006472 398 DSR---RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS-- 472 (643)
Q Consensus 398 ~~~---~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~-- 472 (643)
... ..++.|++||+++++| ||.+|++.|++.+.. . ..+ .++..+.....
T Consensus 108 ~~~~~~~~~v~~~vFDll~~~g------pl~eRr~~L~~li~~-~----------~~~---------~i~~~~~~~~~~~ 161 (282)
T PRK09125 108 TPDDAAWRKVRFMVFDLPDAPG------DFEERLAVLKKLLAK-L----------PSP---------YIKIIEQIRVRSE 161 (282)
T ss_pred CcchhhhcccEEEEEEcCCCCC------CHHHHHHHHHHHHhh-C----------CCC---------cEEEEeEEEcCCH
Confidence 000 1357999999999876 999999999996631 1 011 13444444443
Q ss_pred -hHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEEEe-c-CCc-----eeEEEE-eCCeee
Q 006472 473 -TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT-D-DDR-----QLLYVF-ERGKKK 543 (643)
Q Consensus 473 -~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~~~nTvDF~l~~~-~-~~~-----~~L~~~-~~g~~~ 543 (643)
.+..+++ ..+.++.||||+|..+++|.+|++..|+|+||. .+.|++|--- . .++ +.|.+. ..|...
T Consensus 162 ~~~~~~~~---~~~~~G~EGiV~K~~ds~Y~~GRs~~wlKiK~~--~~~d~vIvG~~~g~Gk~~g~~gsllv~~~~g~~~ 236 (282)
T PRK09125 162 AALQQFLD---QIVAAGGEGLMLHRPDAPYEAGRSDDLLKLKPY--YDAEATVIGHLPGKGKFAGMLGALLVETPDGREF 236 (282)
T ss_pred HHHHHHHH---HHHHcCCCEEEEeCCCCCCcCCCCCCcEEEEec--CCCcEEEEEEEcCCCcccCceeeEEEEeCCCCEE
Confidence 3444555 457789999999999999999999999999985 4789987222 1 111 123333 234321
Q ss_pred eecCceeEecC--CCCCCCCceEEEEEEeC--CCC---eeEEEEEecC
Q 006472 544 LMEGSSVEFTD--REPSFYSGKIIECTWDP--DVQ---LWKCMRIRTD 584 (643)
Q Consensus 544 ~~~~~~~~f~~--~~~~~~dg~IvEc~~d~--~~~---~W~~~R~R~D 584 (643)
-+ ++ -|++ .....+-|+||++.|-. .+| .=+|.++|.|
T Consensus 237 ~V-gs--G~t~~~r~~~~~~g~~~~V~y~e~t~~g~lR~P~f~g~R~D 281 (282)
T PRK09125 237 KI-GS--GFSDAERENPPKIGSIITYKYRGLTKNGLPRFASFLRVRED 281 (282)
T ss_pred Ee-CC--CCCHHHhcCCCCCCCEEEEEecccCCCCcccCCEEEEEecC
Confidence 11 11 2443 22234568999999943 122 2458888887
No 41
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=99.72 E-value=3.5e-17 Score=159.09 Aligned_cols=146 Identities=22% Similarity=0.265 Sum_probs=100.4
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecC-----------C
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKL-----------P 397 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~-----------~ 397 (643)
...|++++|+||+|+++. ++ .+++|+++-+ + .+.. ...+ ...++||||||.-.. .
T Consensus 15 ~~~~~~e~K~DG~R~~~~--~~--~~~SR~g~~~--t--~~~~-~~~~-----l~~~ilDGElv~~~~~f~~l~~~~~~~ 80 (174)
T cd07896 15 ISGYLVSEKLDGVRAYWD--GK--QLLSRSGKPI--A--APAW-FTAG-----LPPFPLDGELWIGRGQFEQTSSIVRSK 80 (174)
T ss_pred hHHeeechhhceEEEEEe--cc--EEEecCCcCC--C--CCHH-HHhh-----CCCCccCceEEcCCCCHHHHHHHHhcC
Confidence 358999999999999753 22 8999998732 2 1110 0012 234999999997321 0
Q ss_pred CC---CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhH
Q 006472 398 DS---RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTV 474 (643)
Q Consensus 398 ~~---~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~ 474 (643)
.. ....+.|++||+|. +.+||.+|++.|++.+.... .+ .+...+.+...+.
T Consensus 81 ~~~~~~~~~~~f~vFDil~------~~~p~~eR~~~L~~~i~~~~-----------~~---------~~~~~~~~~~~~~ 134 (174)
T cd07896 81 KPDDEDWRKVKFMVFDLPS------AKGPFEERLERLKNLLEKIP-----------NP---------HIKIVPQIPVKSN 134 (174)
T ss_pred CCChhhcccceEEEEeCCC------CCCCHHHHHHHHHHHHHhCC-----------CC---------cEEEEeeeeeCCH
Confidence 10 12468999999999 78999999999999763210 00 1344444444433
Q ss_pred HHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEec
Q 006472 475 NKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKY 514 (643)
Q Consensus 475 ~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP 514 (643)
+.+.+.+...+.++.||||++..+++|.+|++..|+||||
T Consensus 135 ~~i~~~~~~~~~~g~EGlv~K~~ds~Y~~gR~~~wlK~Kp 174 (174)
T cd07896 135 EALDQYLDEVVAAGGEGLMLRRPDAPYETGRSDNLLKLKP 174 (174)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCCcccCCcCCCceeeCC
Confidence 3333323346788999999999999999999999999998
No 42
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.70 E-value=2e-16 Score=141.89 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=116.3
Q ss_pred CceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHH
Q 006472 102 GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNA 181 (643)
Q Consensus 102 ~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~ 181 (643)
.+||....|.+.+++. +++.++. .++.+|+.++ ++.||...++..||..+..|+.| |.+|+..
T Consensus 17 MrFLIThnPtnaTln~------------fieELkK--ygvttvVRVC--e~TYdt~~lek~GI~Vldw~f~d-g~ppp~q 79 (173)
T KOG2836|consen 17 MRFLITHNPTNATLNK------------FIEELKK--YGVTTVVRVC--EPTYDTTPLEKEGITVLDWPFDD-GAPPPNQ 79 (173)
T ss_pred eEEEEecCCCchhHHH------------HHHHHHh--cCCeEEEEec--ccccCCchhhhcCceEeeccccc-CCCCchH
Confidence 5899999887776554 4444543 5799999999 66899999999999999999988 5888899
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHH
Q 006472 182 SVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 182 ~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~ 258 (643)
.+..|+..+..-+. .+++..|+|||.+|+||...|||..||+ .||..++|+++++++|.+++ |..|+..|.+|
T Consensus 80 vv~~w~~l~~~~f~--e~p~~cvavhcvaglgrapvlvalalie-~gmkyedave~ir~krrga~-n~kql~~leky 152 (173)
T KOG2836|consen 80 VVDDWLSLVKTKFR--EEPGCCVAVHCVAGLGRAPVLVALALIE-AGMKYEDAVEMIRQKRRGAI-NSKQLLYLEKY 152 (173)
T ss_pred HHHHHHHHHHHHHh--hCCCCeEEEEeecccCcchHHHHHHHHH-ccccHHHHHHHHHHHhhccc-cHHHHHHHHHh
Confidence 99999998876666 5789999999999999999999999998 69999999999999999876 56777777554
No 43
>PRK12361 hypothetical protein; Provisional
Probab=99.67 E-value=5.3e-16 Score=176.60 Aligned_cols=120 Identities=20% Similarity=0.397 Sum_probs=99.4
Q ss_pred CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~l 218 (643)
.+|++||||+.+.+.. +......|++|+++|+.|+ ..|+.+++ +.+.+||++..+.+++|+|||++|+|||+++
T Consensus 119 ~gI~~Vldlt~E~~~~-~~~~~~~~i~yl~iPi~D~-~~p~~~~l----~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~v 192 (547)
T PRK12361 119 NKITAILDVTAEFDGL-DWSLTEEDIDYLNIPILDH-SVPTLAQL----NQAINWIHRQVRANKSVVVHCALGRGRSVLV 192 (547)
T ss_pred cCCCEEEEcccccccc-cccccccCceEEEeecCCC-CCCcHHHH----HHHHHHHHHHHHCCCeEEEECCCCCCcHHHH
Confidence 6899999999653321 1122235899999999996 67776544 4556788877778899999999999999999
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCC
Q 006472 219 IVHFLMRS-QSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRL 264 (643)
Q Consensus 219 i~aYLm~~-~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~ 264 (643)
++||||.+ .++++++|++.++++||.+.+++.|+++|.+++.....
T Consensus 193 v~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~ 239 (547)
T PRK12361 193 LAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKL 239 (547)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Confidence 99999976 48999999999999999999999999999999987655
No 44
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.66 E-value=4e-16 Score=154.76 Aligned_cols=119 Identities=18% Similarity=0.286 Sum_probs=105.6
Q ss_pred CCeeEEEEcCCCCCCCCcchhccC-CcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKE-GIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGY 217 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~-gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~ 217 (643)
.+|+.|||+|...+ ..|++. .+.|..||+.|+ ....+.+|+.++..||++++.++..|||||.+|++||.|
T Consensus 196 ~gI~yviNVTpnlp----n~fe~~g~f~YkqipisDh----~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvT 267 (343)
T KOG1717|consen 196 YGIKYVINVTPNLP----NNFENNGEFIYKQIPISDH----ASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVT 267 (343)
T ss_pred cCceEEEecCCCCc----chhhcCCceeEEeeeccch----hhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhH
Confidence 57999999995543 334433 478999999987 347899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCCC
Q 006472 218 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLD 265 (643)
Q Consensus 218 li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~ 265 (643)
++++|||.+..+++.+|+++|+.++..+.||-+|+-||..|...+..+
T Consensus 268 vtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~ 315 (343)
T KOG1717|consen 268 VTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLE 315 (343)
T ss_pred HHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998876654
No 45
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.65 E-value=8.8e-16 Score=160.77 Aligned_cols=121 Identities=20% Similarity=0.364 Sum_probs=105.6
Q ss_pred CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~l 218 (643)
.+|..|+|++...+.+. -....+|+|+.+++.|. |+ .+|..+++.+.+||+.+...++.|+|||.+|++||+++
T Consensus 99 ~~it~vln~~~~~~~~~--~~~~~~~~y~~i~~~D~---~~-~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~ 172 (285)
T KOG1716|consen 99 LGITHVLNVSSSCPNPR--FLKEQGIKYLRIPVEDN---PS-TDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATL 172 (285)
T ss_pred cCCCEEEEecccCCccc--cccccCceEEeccccCC---cc-ccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHH
Confidence 68999999997654321 11223899999999884 44 46777899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCCC
Q 006472 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLD 265 (643)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~ 265 (643)
++||||+..+|++++|+++++++||.+.+|.+|+.||.++...+...
T Consensus 173 viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~ 219 (285)
T KOG1716|consen 173 VIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKK 219 (285)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999987764
No 46
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=99.57 E-value=1.4e-14 Score=161.81 Aligned_cols=176 Identities=20% Similarity=0.288 Sum_probs=124.2
Q ss_pred hhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCcccc-c-cCCCCCcCCc---ccccccCCCCeEeeEEEEEecC
Q 006472 322 DNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRR-V-QMRFPCRNSN---EGLGEKTHHFTLLDGEMIIDKL 396 (643)
Q Consensus 322 ~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~-v-~~~FP~~~~~---~~~~~~~~~~tlLDGElV~d~~ 396 (643)
..+..+...++|+++|.||.|++|+.+++....++||+.-|. . +..+-+.... .++..+....+||||||+.-..
T Consensus 242 ~~~e~m~~~~f~lEtK~DGERiQlHk~g~~~~yfSRNg~dyT~~yg~s~~~g~lt~~i~~~f~~~v~~cILDGEMm~wD~ 321 (881)
T KOG0966|consen 242 AIIEKMGGQDFYLETKFDGERIQLHKDGGEYKYFSRNGNDYTYEYGASYAHGTLTQRIHGAFNKEVESCILDGEMMTWDT 321 (881)
T ss_pred HHHHHhcCCceEEEeeccCceEEEEecCCEEEEEecCCcchhhhcCcccccccccHHHHhhhhhcchheEecceEEEeec
Confidence 456677888999999999999999999999989999986321 0 1111111100 0110111356899999988321
Q ss_pred C-------C-----------CCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCC
Q 006472 397 P-------D-----------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDL 458 (643)
Q Consensus 397 ~-------~-----------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~ 458 (643)
. + .....+.|++||+|++||+++...|+.+|+.+|++.+. |....+
T Consensus 322 ~~~~f~~~G~~~dik~~~~~~~~~qp~yvvfDLLylNgksL~~~~l~qR~e~L~~v~~-p~~~~i--------------- 385 (881)
T KOG0966|consen 322 KTKRFCPFGSNSDIKELSSRDGSQQPCYVVFDLLYLNGKSLFGAPLHQRLEILKKVIV-PKSGRI--------------- 385 (881)
T ss_pred chhhhccCCchhhHHHhhccccCCCceEEEeeeeeecCcccCCccHHHHHHHHHhccc-CCCCee---------------
Confidence 1 0 11257899999999999999999999999999998543 321111
Q ss_pred CCcEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecCCCc
Q 006472 459 EPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYARMN 518 (643)
Q Consensus 459 ~pf~I~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKP~~~n 518 (643)
+.++.+......++.+.|+ .++..+.||||++..+|.|.+|. ...|+|-||....
T Consensus 386 --ei~~~~~~~~~edi~~~f~---~ai~~~~EGIVlK~~~S~Y~pg~R~~gW~K~KPeYlk 441 (881)
T KOG0966|consen 386 --EIVRSEVGSTKEDIEQFFE---EAIDNGEEGIVLKKPDSSYVPGQRSNGWIKLKPEYLK 441 (881)
T ss_pred --EEeehhhcccHHHHHHHHH---HHHhcCCCceEEeccCcccCccccCCCcEeecHHHHh
Confidence 1133333444555566665 47789999999999999999995 7899999998765
No 47
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=99.57 E-value=1.3e-14 Score=163.37 Aligned_cols=140 Identities=21% Similarity=0.313 Sum_probs=99.6
Q ss_pred eCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCC-------------CCcceEEEEeEeeecCCeeccCC
Q 006472 356 DRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS-------------RRQERRYLIYDMMAINQASVIER 422 (643)
Q Consensus 356 dR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~-------------~~~~~~yliFDiL~~~G~~l~~~ 422 (643)
+|++. ..+-.||+.... +..-...++|||||||+-...+. ...+++|++||||++||++++++
T Consensus 1 SRng~--d~T~~fPel~~~--~~~l~~~~~ILDGElVvld~~G~~~F~~Lq~~~~~~~~~pv~~~vFDlL~l~G~dL~~~ 76 (552)
T TIGR02776 1 TRNGH--DWTKRFPEIVKA--LALLKLLPAWIDGEIVVLDERGRADFAALQNALSAGASRPLTYYAFDLLFLSGEDLRDL 76 (552)
T ss_pred CCCcC--cchhhhHHHHHH--HhhCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHhcccCceEEEEEeccccCCcccccC
Confidence 57776 346789977442 10112367999999998532211 11458999999999999999999
Q ss_pred CHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCc
Q 006472 423 PFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYV 502 (643)
Q Consensus 423 pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~~spY~ 502 (643)
||.+|+++|++.+.. .. .+. +....... ...+.+|+. ...++.||||+|..+++|.
T Consensus 77 Pl~eRr~~L~~ll~~-~~----------~~~---------i~~~~~~~-~~~~~~~~~---a~~~G~EGIV~K~~dS~Y~ 132 (552)
T TIGR02776 77 PLEERKKRLKQLLKA-QD----------EPA---------IRYSDHFE-SDGDALLES---ACRLGLEGVVSKRLDSPYR 132 (552)
T ss_pred CHHHHHHHHHHHhhh-cC----------CCc---------EEEeeeec-ccHHHHHHH---HHHCCCceEEEeCCCCCCC
Confidence 999999999996632 10 111 22223322 233466664 5679999999999999999
Q ss_pred cCCCCCeEEEecCCCceEEEEEE
Q 006472 503 PRTHEGLLKWKYARMNSVDFLFE 525 (643)
Q Consensus 503 ~G~~~~llKWKP~~~nTvDF~l~ 525 (643)
+||+..|+|+|+. .+.||.|.
T Consensus 133 ~GRs~~WlKlK~~--~~~e~vI~ 153 (552)
T TIGR02776 133 SGRSKDWLKLKCR--RRQEFVIT 153 (552)
T ss_pred CCCCcchhccccc--ccceEEEE
Confidence 9999999999984 57888873
No 48
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=99.55 E-value=8.9e-16 Score=163.07 Aligned_cols=290 Identities=22% Similarity=0.230 Sum_probs=172.2
Q ss_pred CCCCCCCCCCcccccchhhhhhhcccceeeeecCceeEEEEEEEC-----CEEEEEeCCCccccccCCCCCcCCccc---
Q 006472 305 GRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITI-----DGCYLIDRCFNFRRVQMRFPCRNSNEG--- 376 (643)
Q Consensus 305 ~~~~~~FPGsqPVslsr~~l~~l~~~~Y~V~eK~DG~R~ll~i~~-----~~vyLidR~~~~~~v~~~FP~~~~~~~--- 376 (643)
.....-|||+| +....+++..|..++|.|++|.||+|.++|+.. .+++-+.++...+. .+|.......
T Consensus 36 ~~~~k~~~~~~-~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~---~vp~~~~v~~fv~ 111 (393)
T KOG2386|consen 36 SYSTKTFPGSQ-RFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRG---VVPRTELVDKFVK 111 (393)
T ss_pred CCCcCCCCCcc-ccCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcc---cCCCccchHHHHH
Confidence 34456688887 888889999999999999999999999999953 25655555543222 2454332222
Q ss_pred ccccCCCCeEeeEEEEEecCCCCCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccC
Q 006472 377 LGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRY 456 (643)
Q Consensus 377 ~~~~~~~~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~ 456 (643)
+.+..+.+|.+|||+|...-+.+ .+...||||++|+.+|. .+..+-.+|++......+.+.. .+..++.. . .
T Consensus 112 ~v~~f~~~~~~~~~LI~vhcthG-~NrtgyLI~~yL~~~~~-~s~~~aik~f~~~r~~gi~k~d-yi~~L~~~---~--~ 183 (393)
T KOG2386|consen 112 LVKGFVDDTKLDDELIGVHCTHG-LNRTGYLICAYLADVGG-YSSSEAIKRFADARPPGIEKQD-YIDALYSR---Y--H 183 (393)
T ss_pred HHHHHHhcccCCCCEEEEeCCCc-ccccceeeeeeeeeccC-ccHHHHHHHHHHhCCCccCchH-HHHHHhhc---c--c
Confidence 22345778999999999865442 35788999999998876 5555555555555444433321 11112110 0 1
Q ss_pred CCCCcEEEecceeechhHHHHHHHhccccc-CCCceEEEEeCCCCC-ccCCCCCeEEEecCCCceEEEEEEEecCC--ce
Q 006472 457 DLEPFRVRRKDFWLLSTVNKLLKEFIPKLS-HDADGLVFQGWDDPY-VPRTHEGLLKWKYARMNSVDFLFEVTDDD--RQ 532 (643)
Q Consensus 457 ~~~pf~I~~K~~~~~~~~~~ll~~~~~~l~-h~~DGLIf~p~~spY-~~G~~~~llKWKP~~~nTvDF~l~~~~~~--~~ 532 (643)
...||.+..+..-.-....++.. +... |..||+||++...|| ..|+...++||||..+||+||.++..... .+
T Consensus 184 ~~~p~~vs~p~~~~~~~~~~~~~---~~~~~~~~Dg~i~t~~~~pg~~~g~~~~~~k~k~~~~n~~~~~~~~~~~q~~~~ 260 (393)
T KOG2386|consen 184 DIFPFKVSCPSMPDWKRSIKLKK---PVHKLHGNDGLIFTPAEIPGSKNGKQEALLKWKPFSLNTIDFGVKLEKPQPELG 260 (393)
T ss_pred ccccccccCCCCcchhhhhhhcc---ccccccccCCCcCCcccCccccccchhhhhcCCchhcCCcccceeecCCCCCcc
Confidence 34566666555433333223222 2222 999999999999999 47999999999999999999999876431 11
Q ss_pred eEEEEeC--Cee-------eeecCceeEecCCCCCCCCceEEEEEEeCCC-----CeeEEEEEecCCCCCChHHHHHHHH
Q 006472 533 LLYVFER--GKK-------KLMEGSSVEFTDREPSFYSGKIIECTWDPDV-----QLWKCMRIRTDKSTPNDINTYRKVM 598 (643)
Q Consensus 533 ~L~~~~~--g~~-------~~~~~~~~~f~~~~~~~~dg~IvEc~~d~~~-----~~W~~~R~R~DK~~pN~~~tv~~v~ 598 (643)
.|..... |.. ..+. ...| ...+..+|.+-..-.|.+. .+|++.+.|.+...|+..++....+
T Consensus 261 ~l~~~~~~~g~~~~~r~~~~~~~--~~~y--~~~We~dg~~~~~L~~~~~~~~~~dR~~~~~~~~~~~~~~~~~~~~~~~ 336 (393)
T KOG2386|consen 261 DLQCKRKNEGAQPVSRENYKLLV--FEYY--EASWEADGTRYMMLIDGDGEYYDFDRWRFVKGRENLRKIREDSDTKVLH 336 (393)
T ss_pred chhhhhcccccCCccccchhhhh--hhhh--hhhhcccCcEEEEEecCCceeEechhhhHHHhhhhhhcccccccchhhh
Confidence 1111100 100 0000 0001 1222334444333222111 1666666666666666666666666
Q ss_pred HhcccCCCHHHHHHH
Q 006472 599 RSIRDNITEEVLLNE 613 (643)
Q Consensus 599 ~SI~~~It~e~Ll~~ 613 (643)
+++.|+....+.+.+
T Consensus 337 ~tl~dge~~lD~l~~ 351 (393)
T KOG2386|consen 337 QTLLDGEMILDRLKE 351 (393)
T ss_pred hhhcccceecccccc
Confidence 666555554444443
No 49
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.50 E-value=7.4e-14 Score=152.20 Aligned_cols=146 Identities=23% Similarity=0.305 Sum_probs=123.0
Q ss_pred ccCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCC
Q 006472 100 IGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPD 179 (643)
Q Consensus 100 I~~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~ 179 (643)
|+.+||+|.+|....-. ..|-+..+++..+..++.+-..|-||+. ++.|++..|... ...+++.|+ .+|+
T Consensus 18 IT~rIIamsfPa~~~es-----~yRN~l~dV~~fL~s~H~~~y~vyNL~~-er~yd~~~f~g~---V~~~~~~Dh-~~P~ 87 (434)
T KOG2283|consen 18 ITSRIIAMSFPAEGIES-----LYRNNLEDVVLFLDSKHKDHYKVYNLSS-ERLYDPSRFHGR---VARFGFDDH-NPPP 87 (434)
T ss_pred eeeeEEEEeCCCCcchh-----hhcCCHHHHHHHHhhccCCceEEEecCc-cccCCccccccc---eeecCCCCC-CCCc
Confidence 77899999999776322 2344578999999988778888999998 678998888753 455899998 7999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCC-CHHHHHHHHHhcC---C--CccCCHHHHH
Q 006472 180 NASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSM-SVAQAIKKFAEVR---P--PGIYKNEYIE 253 (643)
Q Consensus 180 ~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~-s~~eAi~~~~~~R---p--~~i~~~~~l~ 253 (643)
.+.+..|++.+..|+. .++...|+|||++|.+|||+|||||||..... ++++|+.++.++| . .+...+.|.+
T Consensus 88 L~~l~~~c~~~~~WL~--~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~R 165 (434)
T KOG2283|consen 88 LELLCPFCKSMDNWLS--EDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRR 165 (434)
T ss_pred HHHHHHHHHCHHHHHh--cCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhH
Confidence 9999999999999999 67889999999999999999999999997666 5999999999999 4 3566778888
Q ss_pred HHHH
Q 006472 254 ALYT 257 (643)
Q Consensus 254 ~L~~ 257 (643)
.++-
T Consensus 166 Yv~Y 169 (434)
T KOG2283|consen 166 YVGY 169 (434)
T ss_pred HHHH
Confidence 7743
No 50
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.46 E-value=6.8e-13 Score=129.83 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=77.5
Q ss_pred CCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHh-cCCCH
Q 006472 153 YYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRS-QSMSV 231 (643)
Q Consensus 153 ~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~-~g~s~ 231 (643)
.+........|+.++.+|+.|+ .+|+..++.++ .+||+.....++.|+|||.+|+|||||++|||||.. +++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~D~-~~p~~~~l~~~----v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~ 136 (180)
T COG2453 62 LYNVAIEENDGIQVLHLPILDG-TVPDLEDLDKI----VDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLA 136 (180)
T ss_pred ceecceeccCCceeeeeeecCC-CCCcHHHHHHH----HHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCH
Confidence 3444456678999999999996 78887655554 566666666788999999999999999999999998 45688
Q ss_pred HHHHHHHHhcCCCccCCHHHHHHHHHH
Q 006472 232 AQAIKKFAEVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 232 ~eAi~~~~~~Rp~~i~~~~~l~~L~~~ 258 (643)
++|+...+..|+..+....|...+.+.
T Consensus 137 ~~~i~~~~~~r~~~v~~~~q~~~~~e~ 163 (180)
T COG2453 137 DEAIAVKRRRRPGAVVTEIQHLFELEQ 163 (180)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 888998998888655554444444333
No 51
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair]
Probab=99.35 E-value=4.8e-12 Score=139.02 Aligned_cols=179 Identities=17% Similarity=0.264 Sum_probs=126.5
Q ss_pred hhhhhcccceeeeecCceeEEEEEEECC-EEEEEeCCCccccccCCCCCcCCc-ccccccCCCCeEeeEEEEEecCCCCC
Q 006472 323 NLQLLRQRYYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDSR 400 (643)
Q Consensus 323 ~l~~l~~~~Y~V~eK~DG~R~ll~i~~~-~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~~ 400 (643)
-|..+++..|-.++|+||.|+.++...+ .+++++||.+ ..+.+||..... ..+.......+|||||+|.-...+.+
T Consensus 358 vl~rf~~~~FTCEyKYDGeRAQIH~~edG~v~IfSRN~E--~~T~kYPDi~~~~~~~~kp~v~sFIlD~EvVA~Dr~~~~ 435 (714)
T KOG0967|consen 358 VLERFQDKAFTCEYKYDGERAQIHKLEDGTVEIFSRNSE--NNTGKYPDIIEVISKLKKPSVKSFILDCEVVAWDREKGK 435 (714)
T ss_pred HHHHhhCceeEEEeecCceeeeeEEccCCcEEEEecccc--cccccCccHHHHHHHhhCCccceeEEeeeEEEEeccCCc
Confidence 4457788999999999999999998754 5899999987 457899976432 11111224789999999985432211
Q ss_pred --------------------CcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006472 401 --------------------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 460 (643)
Q Consensus 401 --------------------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~p 460 (643)
+-.+..++||+|++||+++.++|+.+|+.+|.+.+..- |
T Consensus 436 IlpFQvLSTRkRk~v~v~dikV~Vcvf~FDily~ng~~Li~~pL~eRR~~l~e~f~e~-------------~-------- 494 (714)
T KOG0967|consen 436 ILPFQVLSTRKRKNVDVNDIKVKVCVFVFDILYLNGESLIQEPLRERRELLHESFKEI-------------P-------- 494 (714)
T ss_pred cCchhhhhhhhccccchhhceEEEEEEEEeeeeeCChhhhhhhHHHHHHHHHhhcccC-------------C--------
Confidence 12467899999999999999999999999998855221 0
Q ss_pred cEEEecceeechhHHHHHHHhcccccCCCceEEEEeC--CCCCccC-CCCCeEEEecCC----CceEEEEE
Q 006472 461 FRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYAR----MNSVDFLF 524 (643)
Q Consensus 461 f~I~~K~~~~~~~~~~ll~~~~~~l~h~~DGLIf~p~--~spY~~G-~~~~llKWKP~~----~nTvDF~l 524 (643)
=..........++++++-+.+-....+..||||.+-. ++-|-+- |+..|||.|-.. ..|+|+++
T Consensus 495 g~f~fat~~~tn~~~eiq~Fl~~sv~~~cEGlMvKtLd~~atYep~kRs~~WlKlKkDYldgvgdslDLv~ 565 (714)
T KOG0967|consen 495 GEFQFATSLDTNDIDEIQEFLEESVQNSCEGLMVKTLDTNATYEPSKRSNNWLKLKKDYLDGVGDSLDLVV 565 (714)
T ss_pred CceeEeeeeccCCHHHHHHHHHHhhccCcceeEEEeeccccccCchhhccchhhhhhhhhcccccceeeee
Confidence 0123333334444444333333578899999999964 5678765 478999999665 45677765
No 52
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.31 E-value=5.1e-12 Score=121.64 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=61.5
Q ss_pred HHHHHcCCCeeEEEEcCCCCCCCCc-chhccCCcEEEEeeccCCCC---CCCHHHHHHHHHHHHHHHHhcccCCCeEEEE
Q 006472 132 HQLRVLGRKLGLVIDLTNTTRYYPT-SDLKKEGIKHVKIQCKGRDA---VPDNASVNNFVYEVTQFLSRQKHSKKYILVH 207 (643)
Q Consensus 132 ~~~~~~~~~I~~VIdLt~~~~~y~~-~~~~~~gI~y~~ip~~d~~~---~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVH 207 (643)
..++. .++++||+|+.+....+. ..+++.||+++++++..... .++.+.+.+.+ +.|. ...+.+|+||
T Consensus 26 ~fL~~--L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL----~~il--d~~n~PvLiH 97 (164)
T PF03162_consen 26 PFLER--LGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEAL----EIIL--DPRNYPVLIH 97 (164)
T ss_dssp HHHHH--HT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHH----HHHH---GGG-SEEEE
T ss_pred HHHHH--CCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHH----HHHh--CCCCCCEEEE
Confidence 44444 479999999976543322 34578999999999976421 23444454443 4443 2346799999
Q ss_pred cCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Q 006472 208 CTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRP 243 (643)
Q Consensus 208 C~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp 243 (643)
|.+|..|||++|+||. +.+||+..+|++.++..-.
T Consensus 98 C~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~ 132 (164)
T PF03162_consen 98 CNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG 132 (164)
T ss_dssp -SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG
T ss_pred eCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC
Confidence 9999999999999999 6799999999999997543
No 53
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.18 E-value=7.2e-11 Score=112.01 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCCCC--CCCC----cchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccC
Q 006472 127 FKQVIHQLRVLGRKLGLVIDLTNTT--RYYP----TSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHS 200 (643)
Q Consensus 127 ~~~l~~~~~~~~~~I~~VIdLt~~~--~~y~----~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~ 200 (643)
...=+++++.+ ++..|+.|.... ..|. .+..+..||.++++|++|. .+|+.+...+++..+...+ .+
T Consensus 60 L~~DL~~Lk~~--G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~-~aPd~~~~~~i~~eL~~~L----~~ 132 (168)
T PF05706_consen 60 LQADLERLKDW--GAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDG-SAPDFAAAWQILEELAARL----EN 132 (168)
T ss_dssp HHHHHHHHHHT--T--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TT-S---HHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHC--CCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCC-CCCCHHHHHHHHHHHHHHH----Hc
Confidence 34445566654 488888887432 1232 2456789999999999996 7898776666665555444 47
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHhc-CCCHHHHH
Q 006472 201 KKYILVHCTHGHNRTGYMIVHFLMRSQ-SMSVAQAI 235 (643)
Q Consensus 201 ~~~VlVHC~~G~~RSG~li~aYLm~~~-g~s~~eAi 235 (643)
|+.|+|||..|+||||+++||+|++.. ++++++||
T Consensus 133 g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 133 GRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp T--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 899999999999999999999999854 37999997
No 54
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=99.14 E-value=4.6e-10 Score=119.90 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=97.6
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccc-cccCCCCCcCCcccccccCCCCeEeeEEEEEecCC---CCC-C-cc
Q 006472 330 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFR-RVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP---DSR-R-QE 403 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~-~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~---~~~-~-~~ 403 (643)
..|+|+||.||.|+.++..++++.+++|++.+. .++-++|..... .+. ..+.+.+||||+|.-..+ ... . .+
T Consensus 48 ~~~~vEEKlDG~nvri~~~~G~v~a~TR~G~i~e~~T~~~~eiv~~-~~~-~~~p~~iLdGElvg~~~p~v~~~~~~~~~ 125 (342)
T cd07894 48 GPVAVEEKMNGYNVRIVRIGGKVLAFTRGGFICPFTTDRLRDLIDP-EFF-DDHPDLVLCGEVVGPENPYVPGSYPEVED 125 (342)
T ss_pred CCEEEEEeECCcEEEEEEECCEEEEEeCCCccCccchhhHhhhchH-Hhh-ccCCCEEEEEEEEecCCccccccCccccc
Confidence 589999999999999988888999999997633 234455544211 111 123679999999875422 111 1 36
Q ss_pred eEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcc
Q 006472 404 RRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIP 483 (643)
Q Consensus 404 ~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~~~ 483 (643)
+.|++||++..++ ...+|+.+|.++|++... |.. + . +..........+.++++ .
T Consensus 126 v~F~vFDI~~~~~--~~~lp~~eR~~lLe~lg~-~~v-----------~-------~--~~~~~~~d~~~l~~~l~---~ 179 (342)
T cd07894 126 VGFFVFDIRKKNT--GRPLPVEERRELLEKYGL-PTV-----------R-------L--FGEFTADEIEELKEIIR---E 179 (342)
T ss_pred cEEEEEeeEEcCC--CCCCCHHHHHHHHHhcCC-CCc-----------c-------e--EEEEecCCHHHHHHHHH---H
Confidence 7999999999875 667999999999988532 110 0 0 11111112334444554 3
Q ss_pred cccCCCceEEEEeCCC-----CCccC
Q 006472 484 KLSHDADGLVFQGWDD-----PYVPR 504 (643)
Q Consensus 484 ~l~h~~DGLIf~p~~s-----pY~~G 504 (643)
...++.||||+|..++ .|+..
T Consensus 180 ~~~~G~EGVVlK~~~~~~~~~Ky~t~ 205 (342)
T cd07894 180 LDKEGREGVVLKDPDMRVPPLKYTTS 205 (342)
T ss_pred HHHCCCceEEEeccccccCcceeecC
Confidence 5678999999999988 56654
No 55
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.09 E-value=7.7e-10 Score=97.04 Aligned_cols=91 Identities=24% Similarity=0.347 Sum_probs=71.5
Q ss_pred EEEeeccCCCCCCCH-HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcC------CCHHHHHHHH
Q 006472 166 HVKIQCKGRDAVPDN-ASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQS------MSVAQAIKKF 238 (643)
Q Consensus 166 y~~ip~~d~~~~P~~-~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g------~s~~eAi~~~ 238 (643)
|.....+|. .+|.. +.+.+|+..+.+..... ..+++|+|||.+|.||||+++++|++..+. .++.+++..+
T Consensus 5 ~~~~~Wpd~-~~P~~~~~~~~~~~~v~~~~~~~-~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00404 5 YHYTGWPDH-GVPESPDSILEFLRAVKKNLNQS-SSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EeeCCCCCC-CCCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 344455565 45654 78888888887776532 236899999999999999999999997642 5788999999
Q ss_pred HhcCCCccCCHHHHHHHHHH
Q 006472 239 AEVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 239 ~~~Rp~~i~~~~~l~~L~~~ 258 (643)
++.|+..+.+..+...++..
T Consensus 83 r~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 83 RKQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred HhhhhhhCCcHHHHHHHHHH
Confidence 99999999998888777653
No 56
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.09 E-value=7.7e-10 Score=97.04 Aligned_cols=91 Identities=24% Similarity=0.347 Sum_probs=71.5
Q ss_pred EEEeeccCCCCCCCH-HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcC------CCHHHHHHHH
Q 006472 166 HVKIQCKGRDAVPDN-ASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQS------MSVAQAIKKF 238 (643)
Q Consensus 166 y~~ip~~d~~~~P~~-~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g------~s~~eAi~~~ 238 (643)
|.....+|. .+|.. +.+.+|+..+.+..... ..+++|+|||.+|.||||+++++|++..+. .++.+++..+
T Consensus 5 ~~~~~Wpd~-~~P~~~~~~~~~~~~v~~~~~~~-~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00012 5 YHYTGWPDH-GVPESPDSILEFLRAVKKNLNQS-SSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EeeCCCCCC-CCCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 344455565 45654 78888888887776532 236899999999999999999999997642 5788999999
Q ss_pred HhcCCCccCCHHHHHHHHHH
Q 006472 239 AEVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 239 ~~~Rp~~i~~~~~l~~L~~~ 258 (643)
++.|+..+.+..+...++..
T Consensus 83 r~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 83 RKQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred HhhhhhhCCcHHHHHHHHHH
Confidence 99999999998888777653
No 57
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.94 E-value=1.4e-08 Score=94.84 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHcCCCeeEEEEcCCCCCC-CCcc------hhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006472 123 KRYSFKQVIHQLRVLGRKLGLVIDLTNTTRY-YPTS------DLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLS 195 (643)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~-y~~~------~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~ 195 (643)
..-++.++-. ++. .+|++||||....+. -.+. .....|++|+++|+... .++.+.+..|...+ +
T Consensus 13 ~qlt~~d~~~-L~~--~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~~~----~ 83 (135)
T TIGR01244 13 PQLTKADAAQ-AAQ--LGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRAAI----G 83 (135)
T ss_pred CCCCHHHHHH-HHH--CCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHHHH----H
Confidence 4456777654 444 569999999865321 1221 22457999999999764 35777887775433 3
Q ss_pred hcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhc
Q 006472 196 RQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEV 241 (643)
Q Consensus 196 ~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~ 241 (643)
...++|++||++|. |||.+.+.++.. .|++.+++++..++.
T Consensus 84 ---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~ 124 (135)
T TIGR01244 84 ---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAA 124 (135)
T ss_pred ---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHc
Confidence 23588999999999 999998888766 799999999988765
No 58
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.83 E-value=1.9e-08 Score=102.08 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=69.5
Q ss_pred cEEEEee-ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhc-----CCCHHHHHHH
Q 006472 164 IKHVKIQ-CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQ-----SMSVAQAIKK 237 (643)
Q Consensus 164 I~y~~ip-~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~-----g~s~~eAi~~ 237 (643)
|.++++. .+|++.+++.+.+.+|+..+...... ..+++|+|||.+|.||||+++|++++..+ .+++.+|+..
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~--~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQ--PGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhcc--CCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3444443 45554344446777777777654331 34679999999999999999999986543 5899999999
Q ss_pred HHhcCCCccCCHHHHHHHHH
Q 006472 238 FAEVRPPGIYKNEYIEALYT 257 (643)
Q Consensus 238 ~~~~Rp~~i~~~~~l~~L~~ 257 (643)
+|+.|+..+.+..|...++.
T Consensus 208 iR~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 208 LRSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HHhccccccCCHHHHHHHHH
Confidence 99999999999988887765
No 59
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.73 E-value=5.7e-08 Score=106.39 Aligned_cols=99 Identities=15% Similarity=0.260 Sum_probs=74.2
Q ss_pred cEEEEee-ccCCCCCCCHHHHHHHHHHHHHHHHhcc-----cCCCeEEEEcCCCCChhHHHHHHHHHHhcCC-CHHHHHH
Q 006472 164 IKHVKIQ-CKGRDAVPDNASVNNFVYEVTQFLSRQK-----HSKKYILVHCTHGHNRTGYMIVHFLMRSQSM-SVAQAIK 236 (643)
Q Consensus 164 I~y~~ip-~~d~~~~P~~~~i~~f~~~v~~fi~~~~-----~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~-s~~eAi~ 236 (643)
|.++++. .+||+.+|+.+.+..|++.|........ .+....+|||.+|+||||++||+|++...++ ++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 4444443 4788766666678888877765432110 0112347999999999999999999976564 8999999
Q ss_pred HHHhcCCC-ccCCHHHHHHHHHHHhcc
Q 006472 237 KFAEVRPP-GIYKNEYIEALYTFYHEK 262 (643)
Q Consensus 237 ~~~~~Rp~-~i~~~~~l~~L~~~y~~~ 262 (643)
.+|..|++ .+.+..|.+.|++....+
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHH
Confidence 99999998 999999999998776543
No 60
>PLN02727 NAD kinase
Probab=98.73 E-value=6.5e-08 Score=112.11 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCC---C---CcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006472 122 GKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRY---Y---PTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLS 195 (643)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~---y---~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~ 195 (643)
..+-+++++-. +.+ .++++||||+.+... | ..+..+..|++|+++|+.+. ..|+.++|.+|.+.+.+
T Consensus 266 sgQpspe~la~-LA~--~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~--- 338 (986)
T PLN02727 266 GGQVTEEGLKW-LLE--KGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSD--- 338 (986)
T ss_pred eCCCCHHHHHH-HHH--CCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHh---
Confidence 34557888754 333 579999999865542 2 11234568999999999775 68999999998754422
Q ss_pred hcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCH
Q 006472 196 RQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSV 231 (643)
Q Consensus 196 ~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~ 231 (643)
...++||+||+.|..|||+|+||||....+-..
T Consensus 339 ---slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~ 371 (986)
T PLN02727 339 ---SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE 371 (986)
T ss_pred ---hcCCCEEEECCCCCchHHHHHHHHHHHHcccch
Confidence 246899999999999999999999998666543
No 61
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.68 E-value=9e-08 Score=98.85 Aligned_cols=84 Identities=26% Similarity=0.371 Sum_probs=66.0
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHhcCCC
Q 006472 171 CKGRDAVP-DNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRS-----QSMSVAQAIKKFAEVRPP 244 (643)
Q Consensus 171 ~~d~~~~P-~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~-----~g~s~~eAi~~~~~~Rp~ 244 (643)
.+|+ .+| +.+.+.+|+..+..... ..+++|+|||.+|.||||+++|++++.. ...++.+|+..+|+.|++
T Consensus 166 W~d~-~~P~~~~~~~~~i~~v~~~~~---~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 166 WPDH-GVPESPKSILDLVRAVRKSQS---TSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHhhc---cCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 3455 355 55677777766655432 1268999999999999999999988742 357999999999999999
Q ss_pred ccCCHHHHHHHHHH
Q 006472 245 GIYKNEYIEALYTF 258 (643)
Q Consensus 245 ~i~~~~~l~~L~~~ 258 (643)
++.+..|...++..
T Consensus 242 ~v~~~~Qy~f~~~~ 255 (258)
T smart00194 242 MVQTEEQYIFLYRA 255 (258)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999998887653
No 62
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.41 E-value=2.8e-06 Score=84.54 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=88.0
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCC---CcchhccCCcEEEEeeccCCC---CCCCHHHHHHH
Q 006472 113 EFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYY---PTSDLKKEGIKHVKIQCKGRD---AVPDNASVNNF 186 (643)
Q Consensus 113 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y---~~~~~~~~gI~y~~ip~~d~~---~~P~~~~i~~f 186 (643)
..|....|..--|+.-.. .+++.||.|+++. | +-..++..||+++++.|.+.. .-|.......-
T Consensus 66 ~lyRSg~P~~~NfsFL~~--------L~LksIisL~pE~--yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~ 135 (249)
T KOG1572|consen 66 GLYRSGFPRPENFSFLKT--------LHLKSIISLCPEP--YPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHS 135 (249)
T ss_pred ceeecCCCCccchHHHHH--------hhhheEEEecCCC--CChHHHHHHHhcCceEEEEecccccccccCCCCCChHHH
Confidence 455555554444443222 3588999999764 4 234678899999999998853 15555556666
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Q 006472 187 VYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPP 244 (643)
Q Consensus 187 ~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp~ 244 (643)
+..+.+++- ...+.++||||+.|.-|||+||+|.. +.++|++...++.+...-..
T Consensus 136 i~~~l~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa~s 190 (249)
T KOG1572|consen 136 IRKALKVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFAGS 190 (249)
T ss_pred HHHHHHHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhccc
Confidence 666667765 45678999999999999999999999 77999999998888766543
No 63
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.35 E-value=2.9e-06 Score=89.59 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=65.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHh-----cccCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHHHHh
Q 006472 171 CKGRDAVPDNASVNNFVYEVTQFLSR-----QKHSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKKFAE 240 (643)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~-----~~~~~~~VlVHC~~G~~RSG~li~aYLm~-----~~g~s~~eAi~~~~~ 240 (643)
.+|+|.+.+...+..|+..|.+.... .....++|+|||.+|+||||+++|...+- ....++.+++..+|+
T Consensus 186 WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~ 265 (298)
T PHA02740 186 WPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQ 265 (298)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHh
Confidence 46665555677888888777654321 11234799999999999999998876553 334589999999999
Q ss_pred cCCCccCCHHHHHHHHH
Q 006472 241 VRPPGIYKNEYIEALYT 257 (643)
Q Consensus 241 ~Rp~~i~~~~~l~~L~~ 257 (643)
.|+..+....|...++.
T Consensus 266 qR~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 266 KKYGCMNCLDDYVFCYH 282 (298)
T ss_pred hCccccCCHHHHHHHHH
Confidence 99999999888776654
No 64
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.34 E-value=7.5e-07 Score=84.60 Aligned_cols=64 Identities=17% Similarity=0.400 Sum_probs=46.2
Q ss_pred cchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHH
Q 006472 156 TSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMR 225 (643)
Q Consensus 156 ~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~ 225 (643)
....+..|+.|++||+.|+ ..|..+.+.+|+.. +... .++..+.+||.+|.|||.|..++|.|-
T Consensus 85 ~~~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~----v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDH-QAPDPEDIDAFINF----VKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TT-S---HHHHHHHHHH----HHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCc-CCCCHHHHHHHHHH----HHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445678999999999997 79999999999754 4433 457899999999999999999998874
No 65
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.33 E-value=1.9e-06 Score=77.57 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHcCCCeeEEEEcCCCCCCC---C----cchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006472 125 YSFKQVIHQLRVLGRKLGLVIDLTNTTRYY---P----TSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQ 197 (643)
Q Consensus 125 ~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y---~----~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~ 197 (643)
-+++++-. +.+ .++++|||+..+.+-. . .+..+..|+.|+++|+.+. .++.+.+..|.+.+ +
T Consensus 15 ~~~~d~~~-la~--~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~~l----~-- 83 (110)
T PF04273_consen 15 PSPEDLAQ-LAA--QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFADAL----E-- 83 (110)
T ss_dssp --HHHHHH-HHH--CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHHHH----H--
T ss_pred CCHHHHHH-HHH--CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHHHH----H--
Confidence 35667654 444 5799999998553221 1 1346689999999999863 57889999886444 3
Q ss_pred ccCCCeEEEEcCCCCChhHHHHHH
Q 006472 198 KHSKKYILVHCTHGHNRTGYMIVH 221 (643)
Q Consensus 198 ~~~~~~VlVHC~~G~~RSG~li~a 221 (643)
...++|++||..|. |++.|-+.
T Consensus 84 -~~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 84 -SLPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp -TTTTSEEEE-SCSH-HHHHHHHH
T ss_pred -hCCCCEEEECCCCh-hHHHHHHH
Confidence 23569999999996 99877554
No 66
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.29 E-value=1.6e-06 Score=83.53 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHcCCCeeEEEEcCCCCCCC-CcchhccCCcEEEEeeccCCCCCCCHHHH----------HH---------
Q 006472 126 SFKQVIHQLRVLGRKLGLVIDLTNTTRYY-PTSDLKKEGIKHVKIQCKGRDAVPDNASV----------NN--------- 185 (643)
Q Consensus 126 ~~~~l~~~~~~~~~~I~~VIdLt~~~~~y-~~~~~~~~gI~y~~ip~~d~~~~P~~~~i----------~~--------- 185 (643)
+..++- .+. ..+|++||||....+.- .|..+. .|++|+++|+.+. .......+ ..
T Consensus 31 t~~d~~-~L~--~lgI~tIiDLRs~~E~~~~p~~~~-~g~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 105 (164)
T PF13350_consen 31 TEADLE-RLR--ELGIRTIIDLRSPTERERAPDPLI-DGVQYVHIPIFGD-DASSPDKLAELLQSSADAPRGMLEFYREM 105 (164)
T ss_dssp -HHHHH-HHH--HTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S--TTH----------HHHHHHHHHHHHHHG
T ss_pred CHHHHH-HHH--hCCCCEEEECCCccccccCCCCCc-CCceeeeeccccc-ccccccccccccccccchhhHHHHHHHHH
Confidence 444443 333 36799999999653221 222222 4999999999764 22211111 11
Q ss_pred ------HHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHH
Q 006472 186 ------FVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFA 239 (643)
Q Consensus 186 ------f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~ 239 (643)
.+..+...|. ..+ ++|++||++|+.|||.++|..|. -.|.+.++.++-+.
T Consensus 106 ~~~~~~~~~~~~~~l~--~~~-~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~DY~ 161 (164)
T PF13350_consen 106 LESYAEAYRKIFELLA--DAP-GPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIADYL 161 (164)
T ss_dssp GGSTHHHHHHHHHHHH---TT---EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHHHHH
T ss_pred HHhhhHHHHHHHHHhc--cCC-CcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 1223333343 233 69999999999999977777665 58999988876554
No 67
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.26 E-value=5.9e-06 Score=87.56 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=63.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhc--------ccCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHH
Q 006472 171 CKGRDAVPDNASVNNFVYEVTQFLSRQ--------KHSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKK 237 (643)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~--------~~~~~~VlVHC~~G~~RSG~li~aYLm~-----~~g~s~~eAi~~ 237 (643)
.+|+|.+.+...+.+|+..+...-... ....++|+|||.+|+||||+++|...+- ....++-+++..
T Consensus 191 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~ 270 (303)
T PHA02742 191 WPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRD 270 (303)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 356655556677778877665421110 1124799999999999999998876654 224588999999
Q ss_pred HHhcCCCccCCHHHHHHHHHH
Q 006472 238 FAEVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 238 ~~~~Rp~~i~~~~~l~~L~~~ 258 (643)
+|+.|+..+.+..|...++..
T Consensus 271 lR~qR~~~Vqt~~QY~F~y~~ 291 (303)
T PHA02742 271 LRKQRHNCLSLPQQYIFCYFI 291 (303)
T ss_pred HHhhcccccCCHHHHHHHHHH
Confidence 999999999998887766543
No 68
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.26 E-value=5.7e-06 Score=83.28 Aligned_cols=79 Identities=25% Similarity=0.388 Sum_probs=63.6
Q ss_pred CC-CHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHhcCCCccCCHH
Q 006472 177 VP-DNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRS-----QSMSVAQAIKKFAEVRPPGIYKNE 250 (643)
Q Consensus 177 ~P-~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~-----~g~s~~eAi~~~~~~Rp~~i~~~~ 250 (643)
+| +...+..|+..+...- ...+++|+|||.+|.||||+++++.++.. ...++.+++..+++.|++.+.+..
T Consensus 148 ~P~~~~~~~~~~~~v~~~~---~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~ 224 (235)
T PF00102_consen 148 VPPSPESFLDFIRKVNKSK---DDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPE 224 (235)
T ss_dssp SGSSSHHHHHHHHHHHHHH---STTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHH
T ss_pred cccccchhhhhhhhccccc---cCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHH
Confidence 44 5566667766665543 34678999999999999999999998842 246899999999999999999999
Q ss_pred HHHHHHHH
Q 006472 251 YIEALYTF 258 (643)
Q Consensus 251 ~l~~L~~~ 258 (643)
|...++..
T Consensus 225 qy~f~~~~ 232 (235)
T PF00102_consen 225 QYRFCYMA 232 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887754
No 69
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.25 E-value=6.3e-06 Score=87.71 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=61.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcc-------cCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHHH
Q 006472 171 CKGRDAVPDNASVNNFVYEVTQFLSRQK-------HSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKKF 238 (643)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~-------~~~~~VlVHC~~G~~RSG~li~aYLm~-----~~g~s~~eAi~~~ 238 (643)
.+|++.+.+...+.+|+..+...-+... ...++|+|||.+|+||||+++|...+. ....++.+++..+
T Consensus 192 Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~l 271 (312)
T PHA02747 192 WFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKI 271 (312)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4555433345667777766654322111 113699999999999999999987532 3346899999999
Q ss_pred HhcCCCccCCHHHHHHH
Q 006472 239 AEVRPPGIYKNEYIEAL 255 (643)
Q Consensus 239 ~~~Rp~~i~~~~~l~~L 255 (643)
|+.|+..+.+..|...+
T Consensus 272 R~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 272 REQRHAGIMNFDDYLFI 288 (312)
T ss_pred HhccccccCCHHHHHHH
Confidence 99999999998887777
No 70
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.20 E-value=8e-06 Score=87.30 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=64.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHh----ccc---CCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHHHH
Q 006472 172 KGRDAVPDNASVNNFVYEVTQFLSR----QKH---SKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKKFA 239 (643)
Q Consensus 172 ~d~~~~P~~~~i~~f~~~v~~fi~~----~~~---~~~~VlVHC~~G~~RSG~li~aYLm~-----~~g~s~~eAi~~~~ 239 (643)
+|+|.+.+...+.+|+..+...... ... ..++|+|||.+|+||||+++|...+. ....++.+++..+|
T Consensus 211 pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR 290 (323)
T PHA02746 211 PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIR 290 (323)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 5665444567788888777665321 111 13799999999999999999865432 23468999999999
Q ss_pred hcCCCccCCHHHHHHHHHH
Q 006472 240 EVRPPGIYKNEYIEALYTF 258 (643)
Q Consensus 240 ~~Rp~~i~~~~~l~~L~~~ 258 (643)
+.|+..+.+..|...+++.
T Consensus 291 ~qR~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 291 KQRHSSVFLPEQYAFCYKA 309 (323)
T ss_pred hcccccCCCHHHHHHHHHH
Confidence 9999999999888877754
No 71
>PHA02738 hypothetical protein; Provisional
Probab=98.02 E-value=3.1e-05 Score=82.77 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=62.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhc----------ccCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHH
Q 006472 171 CKGRDAVPDNASVNNFVYEVTQFLSRQ----------KHSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAI 235 (643)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~----------~~~~~~VlVHC~~G~~RSG~li~aYLm~-----~~g~s~~eAi 235 (643)
.+|++.+.+...+.+|+..|.+..... ....++|+|||.+|+||||+++|...+- ....++.+++
T Consensus 187 Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V 266 (320)
T PHA02738 187 WPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIV 266 (320)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHH
Confidence 456644445667777877776532210 0114699999999999999988776532 2345899999
Q ss_pred HHHHhcCCCccCCHHHHHHHHH
Q 006472 236 KKFAEVRPPGIYKNEYIEALYT 257 (643)
Q Consensus 236 ~~~~~~Rp~~i~~~~~l~~L~~ 257 (643)
..+|+.|+..+....|...+++
T Consensus 267 ~~lR~qR~~~vqt~~QY~F~y~ 288 (320)
T PHA02738 267 SSIRNQRYYSLFIPFQYFFCYR 288 (320)
T ss_pred HHHHhhhhhccCCHHHHHHHHH
Confidence 9999999999999988876654
No 72
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=97.99 E-value=0.00011 Score=72.99 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=107.0
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCc-cccccCCCCCcCCcccccc--cCCCCeEeeEEEEEecCCCCCCcceEE
Q 006472 330 RYYYATWKADGTRYMMLITIDGCYLIDRCFN-FRRVQMRFPCRNSNEGLGE--KTHHFTLLDGEMIIDKLPDSRRQERRY 406 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~-~~~v~~~FP~~~~~~~~~~--~~~~~tlLDGElV~d~~~~~~~~~~~y 406 (643)
.+|+|---.-|.|+|++...+.+....++|. +. +||..-. .|-.. .....||||...- . ..-+|
T Consensus 116 qdW~vv~~PvGKR~lvVaSrG~Tvay~k~G~~v~----rF~S~LP-GGnrr~~~a~~ytILDCIy~--e------snQTY 182 (325)
T KOG3132|consen 116 QDWYVVARPVGKRCLVVASRGTTVAYVKNGSTVH----RFPSALP-GGNRRKGPANSYTILDCIYH--E------SNQTY 182 (325)
T ss_pred cceEEEEeecCceEEEEecCCceEEEecCCeeEe----eccccCC-CCCcCCCCcccceeeeeeec--c------cCceE
Confidence 4899988999999999988888888888886 33 4554321 11111 1235699997542 1 12379
Q ss_pred EEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhccccc
Q 006472 407 LIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLS 486 (643)
Q Consensus 407 liFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~~~~l~ 486 (643)
+|.|+++++|.++.+.+..=|.-.|+.-+-+.-. +- ... .-.+|.....++++.+.. .|-.-+.-.++
T Consensus 183 YVlD~~cWrgh~~yec~~dFRffwl~SKL~E~~~-----l~-~~t-----~~~~f~Fs~vp~~pC~q~-~l~~~~~~~~p 250 (325)
T KOG3132|consen 183 YVLDMVCWRGHSLYECTSDFRFFWLQSKLAETGA-----LD-PPT-----VYHKFRFSVVPFYPCDQS-GLHSAYTGSLP 250 (325)
T ss_pred EEEEEEeecCcccccCchHHHHHHHhhhcccccc-----CC-CCC-----cCccceecccCCCCCCHH-HHHHHHcCCCc
Confidence 9999999999999999999999999886533210 10 111 124677777788887652 23333335788
Q ss_pred CCCceEEEEeCCCCCccCCCC
Q 006472 487 HDADGLVFQGWDDPYVPRTHE 507 (643)
Q Consensus 487 h~~DGLIf~p~~spY~~G~~~ 507 (643)
...|||.|.....-|.||.++
T Consensus 251 f~~DGLLFYhks~~yqpgqsp 271 (325)
T KOG3132|consen 251 FVRDGLLFYHKSVVYQPGQSP 271 (325)
T ss_pred eeeeeEEEeecceeeCCCCCc
Confidence 999999999999999999863
No 73
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.96 E-value=2.2e-05 Score=80.94 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPP 244 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp~ 244 (643)
.+++||+||+||..|||+++|+|+...+++....|-++...-++.
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~ 179 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYG 179 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCcc
Confidence 359999999999999999999999986444444444444444443
No 74
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.90 E-value=1.3e-05 Score=85.72 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=67.1
Q ss_pred EEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHH----HhcC----CCHHHHHH
Q 006472 165 KHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLM----RSQS----MSVAQAIK 236 (643)
Q Consensus 165 ~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm----~~~g----~s~~eAi~ 236 (643)
.|+.+-.+|||.+-++--+..|++.|..- ++....-++|.|||.||+|||||+|+.=++ ...| +++..-|+
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~r-q~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIq 494 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHR-QESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQ 494 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhh-hccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHH
Confidence 45666678887666777888898888653 222333469999999999999998765443 2334 56889999
Q ss_pred HHHhcCCCccCCHHHHHHHH
Q 006472 237 KFAEVRPPGIYKNEYIEALY 256 (643)
Q Consensus 237 ~~~~~Rp~~i~~~~~l~~L~ 256 (643)
.++..|.+....+.|.+.+|
T Consensus 495 mVRsqRSGmVQTEaQYkFiY 514 (600)
T KOG0790|consen 495 MVRSQRSGMVQTEAQYKFIY 514 (600)
T ss_pred HHHHHhcchhhhHHhHHHHH
Confidence 99999999887766655554
No 75
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.00023 Score=63.81 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCC-C------cchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHH
Q 006472 121 PGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYY-P------TSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQF 193 (643)
Q Consensus 121 ~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y-~------~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~f 193 (643)
....-++.++.+.. ..++++|||.....+-- . .+..+..|+.|.++|+.+. .++.++|..|...+.+
T Consensus 12 VsgQi~~~D~~~ia---a~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~Al~e- 85 (130)
T COG3453 12 VSGQISPADIASIA---ALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQRALDE- 85 (130)
T ss_pred ecCCCCHHHHHHHH---HhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHHHHHH-
Confidence 33455677776543 26799999998543221 1 2456789999999999874 5788999998765543
Q ss_pred HHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHH
Q 006472 194 LSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKF 238 (643)
Q Consensus 194 i~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~~eAi~~~ 238 (643)
..++||.||+.| .||-.+=..-. ...||+.+++.++=
T Consensus 86 ------aegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g 122 (130)
T COG3453 86 ------AEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALG 122 (130)
T ss_pred ------hCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHH
Confidence 578999999999 57766544434 34689998876653
No 76
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.69 E-value=9.3e-05 Score=86.67 Aligned_cols=90 Identities=19% Similarity=0.332 Sum_probs=63.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHH----HHHHhc-CCCHHHHHHHHHhcCCCc
Q 006472 171 CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVH----FLMRSQ-SMSVAQAIKKFAEVRPPG 245 (643)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~a----YLm~~~-g~s~~eAi~~~~~~Rp~~ 245 (643)
.+|||.+-+......|++.+.. ++ ...+.+|+|||.||+||||++|++ ||+++. .+.+-+.+..+|..|-..
T Consensus 1036 WPDHg~P~D~~~FL~Fleevrs-vR--~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~m 1112 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRS-VR--RGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMM 1112 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHH-Hh--ccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Confidence 4677543344555556555532 22 233679999999999999999864 666532 357889999999999999
Q ss_pred cCCHHHHHHH----HHHHhccC
Q 006472 246 IYKNEYIEAL----YTFYHEKR 263 (643)
Q Consensus 246 i~~~~~l~~L----~~~y~~~~ 263 (643)
|.+..|-... ..+|++..
T Consensus 1113 VQT~~QYkFVyevil~~l~~~~ 1134 (1144)
T KOG0792|consen 1113 VQTLSQYKFVYEVILRVLKRGR 1134 (1144)
T ss_pred ccchHHhhHHHHHHHHHHHhcc
Confidence 9998877654 45566544
No 77
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=97.63 E-value=0.00057 Score=73.51 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCCCCCcccccchhhhh-hhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccc-cCCCCCcCCcccccccCCCCeE
Q 006472 309 MQFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTL 386 (643)
Q Consensus 309 ~~FPGsqPVslsr~~l~-~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v-~~~FP~~~~~~~~~~~~~~~tl 386 (643)
.+||-=.-+-+=..-|. .+....++|+||.||..+-++..++.+++++|.+-+..- +-+++...+..-+ ..+.+.+
T Consensus 57 ~GyP~I~R~~~L~~gi~~~f~~~~v~vEEKlDG~Nvri~~~~g~l~a~tRGgyicp~tt~r~~~~~~~~~~--~d~p~l~ 134 (374)
T TIGR01209 57 RGFPHIKRILLLRPGIKRHFKDPEVVVEEKMNGYNVRIVKYGGNVYALTRGGFICPFTTERLPDLIDLEFF--DDNPDLV 134 (374)
T ss_pred cCCCCcceeeccchhhHHhcCCCcEEEEEeecCceEEEEeECCEEEEEccCcccCCCcHHHHHHHhhHHhh--ccCCCeE
Confidence 35775554433333443 344545999999999999988778899999999875311 0111111111111 1247889
Q ss_pred eeEEEEEecCCCC------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006472 387 LDGEMIIDKLPDS------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 460 (643)
Q Consensus 387 LDGElV~d~~~~~------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~p 460 (643)
|-||++--..+-. ......|++|||. +...-.-+|..+|.+++++.-+..
T Consensus 135 LcGE~iGpenpY~~hs~~y~~l~~~FfvFDI~--d~~t~~~L~~~er~~l~e~yglp~---------------------- 190 (374)
T TIGR01209 135 LCGEMAGPENPYTPEYYPEVKEDLGFFLFDIR--EGKTNRSLPVEERLELAEKYGLPH---------------------- 190 (374)
T ss_pred EEEEEcCCCCCCcccCccccCCCceEEEEEEE--ECCCCccCCHHHHHHHHHHCCCCc----------------------
Confidence 9999994322211 0124579999997 344567889999999998743211
Q ss_pred cEEEecceeechhHHHHHHHhcccc-cCCCceEEEEeCCC
Q 006472 461 FRVRRKDFWLLSTVNKLLKEFIPKL-SHDADGLVFQGWDD 499 (643)
Q Consensus 461 f~I~~K~~~~~~~~~~ll~~~~~~l-~h~~DGLIf~p~~s 499 (643)
+..-.-++...+..-+.+++..| .++-||+|+|+.+.
T Consensus 191 --Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~ 228 (374)
T TIGR01209 191 --VEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEM 228 (374)
T ss_pred --cceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccc
Confidence 11111134444331222333444 47899999998643
No 78
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.57 E-value=0.00011 Score=74.53 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=58.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCC-----------C---HHHHHHH
Q 006472 172 KGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSM-----------S---VAQAIKK 237 (643)
Q Consensus 172 ~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~-----------s---~~eAi~~ 237 (643)
.|. ..|+...+.+++.- +....-.+++++|||.||.|||||+||.--+.+.-- + ..+.+..
T Consensus 194 ~D~-~~p~i~sl~~~~~s----l~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 194 VDF-NVPDIRSLTEVIHS----LNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccc-CCcCHHHHHHHHHH----hhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 454 45654444444322 221112578999999999999999999877754421 1 2345566
Q ss_pred HHhcCCCccCCHHHHHHHHHHHhccC
Q 006472 238 FAEVRPPGIYKNEYIEALYTFYHEKR 263 (643)
Q Consensus 238 ~~~~Rp~~i~~~~~l~~L~~~y~~~~ 263 (643)
+|+.|-....+..|...||....++.
T Consensus 269 LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 269 LRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77888888888899999887766544
No 79
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.41 E-value=0.00053 Score=72.54 Aligned_cols=95 Identities=21% Similarity=0.174 Sum_probs=70.0
Q ss_pred EEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhc-C----CCHHHHHHHHHh
Q 006472 166 HVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQ-S----MSVAQAIKKFAE 240 (643)
Q Consensus 166 y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~-g----~s~~eAi~~~~~ 240 (643)
++....+|+|.+-+...+.+|+..+.+.+. ...+++.|||.+|+|||||++|.--+..+ + .+.-..+...|+
T Consensus 255 f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~---~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~ 331 (374)
T KOG0791|consen 255 FHYTAWPDFGVPSSTESLLQFVRMVRQSLD---TSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRS 331 (374)
T ss_pred EEEeeccccCCCCCchhHHHHHHHHHhhcc---cCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhh
Confidence 344556787533244677788877777665 34789999999999999999998765433 2 245677788899
Q ss_pred cCCCccCCHHHHHHHHHHHhccC
Q 006472 241 VRPPGIYKNEYIEALYTFYHEKR 263 (643)
Q Consensus 241 ~Rp~~i~~~~~l~~L~~~y~~~~ 263 (643)
.|+....+..|...|++-..+..
T Consensus 332 ~R~~mVqte~Qyvfl~~c~~~~l 354 (374)
T KOG0791|consen 332 ARMLMVQTEDQYVFLHQCVLESL 354 (374)
T ss_pred ccccccchHHHHHHHHHHHHHHH
Confidence 99999999999988877665543
No 80
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.28 E-value=0.0033 Score=58.93 Aligned_cols=118 Identities=16% Similarity=0.259 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCeeEEEEcCCCCCCC-CcchhccC---CcEEEEeeccCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCe
Q 006472 129 QVIHQLRVLGRKLGLVIDLTNTTRYY-PTSDLKKE---GIKHVKIQCKGRD-AVPDNASVNNFVYEVTQFLSRQKHSKKY 203 (643)
Q Consensus 129 ~l~~~~~~~~~~I~~VIdLt~~~~~y-~~~~~~~~---gI~y~~ip~~d~~-~~P~~~~i~~f~~~v~~fi~~~~~~~~~ 203 (643)
..+.++..+ .+-..+++|.....++ .+.....+ .+.+-.+..+|.+ ..|.++.+. .+.+|.++.. ...+
T Consensus 22 ~~~ae~~~r-h~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~----~i~DF~~~wp-~~ap 95 (172)
T COG5350 22 SVIAETAAR-HGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVR----AIIDFADEWP-RFAP 95 (172)
T ss_pred HHHHHHHhh-cCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHH----HHHHHHhcCc-cccc
Confidence 344444333 3577788887643333 33322211 2223333333333 456665555 4557776543 3578
Q ss_pred EEEEcCCCCChhHHH--HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHH
Q 006472 204 ILVHCTHGHNRTGYM--IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIE 253 (643)
Q Consensus 204 VlVHC~~G~~RSG~l--i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~ 253 (643)
++|||.+|+|||..+ +++.-+ ...+...++-+.++..+|..-||+.-+.
T Consensus 96 llIHC~aGISRStA~A~i~a~al-a~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 96 LLIHCYAGISRSTAAALIAALAL-APDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred eeeeeccccccchHHHHHHHHhh-ccccChHHHHHHHHhcCcccCCChhHHH
Confidence 999999999998653 333333 3578899999999999999999987664
No 81
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.16 E-value=0.0014 Score=72.12 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHH-h--c---CCCHHHHHHHHHhcCCCccCCHHHHHHHHH
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMR-S--Q---SMSVAQAIKKFAEVRPPGIYKNEYIEALYT 257 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~-~--~---g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~ 257 (643)
..+++.|||.+|.||||++++.-.+. . . .....+.+..++..|+.++.+..|...++.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~ 361 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYA 361 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 46899999999999999999755221 1 2 134888889999999999988777765553
No 82
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0081 Score=63.26 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred CCCCCcccccchhhhh-hhcccceeeeecCceeEEEEEEECCEEEEEeCCCcccccc-CCCCCcCCcccccccCCCCeEe
Q 006472 310 QFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQ-MRFPCRNSNEGLGEKTHHFTLL 387 (643)
Q Consensus 310 ~FPGsqPVslsr~~l~-~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~-~~FP~~~~~~~~~~~~~~~tlL 387 (643)
+||--.-.-+-+.-|. .+.....+|.||.||.-+=++..++.+|.++|.|-+..-+ -+-+..-+..-+ ..+++++|
T Consensus 67 GfPkI~R~llL~p~ik~~F~~~~v~VEEKmnGYNVRV~k~~g~vyAiTRgG~ICPfTT~r~~~l~~~eff--~d~p~lvl 144 (382)
T COG1423 67 GFPKIRRALLLEPTIKKHFGRGKVVVEEKMNGYNVRVVKLGGEVYAITRGGLICPFTTERLRDLIDLEFF--DDYPDLVL 144 (382)
T ss_pred cCchhheeeccchhhHhhcCCCcEEEEEeccCceEEEEEECCEEEEEecCceecCchhHHHHhhcchhhH--hhCCCcEE
Confidence 4664433333333333 2336689999999999888888899999999999754211 111111111111 22588999
Q ss_pred eEEEEEecCCCC-----CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcE
Q 006472 388 DGEMIIDKLPDS-----RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFR 462 (643)
Q Consensus 388 DGElV~d~~~~~-----~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~ 462 (643)
=||||--..|=. ....+-|.+||+.--+ .-..+|..+|+.++++.-+. +
T Consensus 145 cgEmvG~enPYv~~~~y~~e~v~fFvFDire~~--tgr~Lp~eer~~l~ekYgl~-~----------------------- 198 (382)
T COG1423 145 CGEMVGPENPYVPGPYYEKEDVGFFVFDIREKN--TGRPLPVEERLELAEKYGLP-H----------------------- 198 (382)
T ss_pred EEEeccCCCCCCCCCCCccCCceEEEEEEEecC--CCCCCCHHHHHHHHHHcCCC-c-----------------------
Confidence 999997543311 1235789999998754 23678999999999985431 1
Q ss_pred EEecceeechhH-HHHHHHhccccc-CCCceEEEEeCCC
Q 006472 463 VRRKDFWLLSTV-NKLLKEFIPKLS-HDADGLVFQGWDD 499 (643)
Q Consensus 463 I~~K~~~~~~~~-~~ll~~~~~~l~-h~~DGLIf~p~~s 499 (643)
|+.=--++++.+ ..+.+ ++..|. .+-+|+|+|..+.
T Consensus 199 V~~fg~~~~~e~~eei~e-Ive~L~keGREGVV~Kdpdm 236 (382)
T COG1423 199 VEIFGEFPADEAGEEIYE-IVERLNKEGREGVVMKDPDM 236 (382)
T ss_pred eEEeeeechhHhHHHHHH-HHHHHhhcCCcceEecCccc
Confidence 222222344444 33332 444444 6899999998664
No 83
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.54 E-value=0.034 Score=63.16 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=60.6
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHh---cC---CCHHHHHHHHHhc
Q 006472 168 KIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRS---QS---MSVAQAIKKFAEV 241 (643)
Q Consensus 168 ~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~---~g---~s~~eAi~~~~~~ 241 (643)
.+...+.|.+-+...+..|-..|++..+ ....+|+|||..|-||||+-|+.=++-. .| +.+..-++.+|..
T Consensus 897 fLSWp~egvPasarslLdFRRKVNK~YR---GRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 897 FLSWPDEGVPASARSLLDFRRKVNKCYR---GRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eecccccCCccchHHHHHHHHHhhhhcc---CCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 3444444444455677778777776553 3468999999999999999765444321 13 3577779999999
Q ss_pred CCCccCCHHHHHHHH
Q 006472 242 RPPGIYKNEYIEALY 256 (643)
Q Consensus 242 Rp~~i~~~~~l~~L~ 256 (643)
||+..-...|.+..+
T Consensus 974 R~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 974 RPGMVATKDQFEFAL 988 (1004)
T ss_pred CCcceeehhhhHHHH
Confidence 999888777776544
No 84
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.14 E-value=0.015 Score=54.56 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=48.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCC----hhHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Q 006472 171 CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHN----RTGYMIVHFLMRSQSMSVAQAIKKFAEVRP 243 (643)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~----RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp 243 (643)
..|+ .+.....+-+|+..+.+.+++... .+..+|||+..-. -+++||+||+|-.+|||+++|++-+...-|
T Consensus 38 ~~DF-GPlnL~~lyrfc~~l~~~L~~~~~-~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 38 YADF-GPLNLAQLYRFCCKLNKKLKSPEL-KKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp SS-------HHHHHHHHHHHHHHHH-GGG-TTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred cCcC-CCccHHHHHHHHHHHHHHHcCHHh-cCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 3566 478899999999999999986543 4567788876544 378999999999999999999999987754
No 85
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.79 E-value=0.043 Score=65.73 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=52.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHH-----HhcCCCHHHHHHHHHhcCCCc
Q 006472 171 CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLM-----RSQSMSVAQAIKKFAEVRPPG 245 (643)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm-----~~~g~s~~eAi~~~~~~Rp~~ 245 (643)
.+|+|.+-...-+.+|+..+..|- ....++|+|||.||.||||+.|+.=-| .....+.-+-+..+|..|..-
T Consensus 703 Wpd~gvPe~~t~lL~f~rrvk~~~---p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 703 WPDHGVPETPTGLLKFRRRVKTFN---PPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred CCCCCCcccchHHHHHHHHhccCC---CcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 566643333456666766664441 113489999999999999998754322 223346777778888888877
Q ss_pred cCCHHHHHHH
Q 006472 246 IYKNEYIEAL 255 (643)
Q Consensus 246 i~~~~~l~~L 255 (643)
+....|--.+
T Consensus 780 VQt~eQYiFi 789 (1087)
T KOG4228|consen 780 VQTEEQYIFI 789 (1087)
T ss_pred cccHHHHHHH
Confidence 7665554433
No 86
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=93.96 E-value=0.88 Score=50.92 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=76.7
Q ss_pred CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccC--CCeEEEEcCCCCChhH
Q 006472 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHS--KKYILVHCTHGHNRTG 216 (643)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~--~~~VlVHC~~G~~RSG 216 (643)
.....||+++.+... ...+ .....|+++++.+. .. ....+...+..+..|+...... +..|+|+|.-|...|.
T Consensus 317 ~~~~~vI~~s~~~~~--~~~~-~~~~~~L~l~i~~~-K~-gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSV 391 (451)
T PF04179_consen 317 SEFDCVINCSESPTP--KESW-PKSPKYLHLPIPSS-KK-GSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSV 391 (451)
T ss_pred CCcCEEEEcCCCccc--cccc-CCCceEEeCcCCCC-cc-cHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHH
Confidence 456677777743211 1112 24678999999864 33 3467888888999999876555 8899999999999999
Q ss_pred HHHHHHHHHhcCC--C--------------HHHHHHHHHhcCCCccCCHHHHHHHHH
Q 006472 217 YMIVHFLMRSQSM--S--------------VAQAIKKFAEVRPPGIYKNEYIEALYT 257 (643)
Q Consensus 217 ~li~aYLm~~~g~--s--------------~~eAi~~~~~~Rp~~i~~~~~l~~L~~ 257 (643)
-++.+.|+....- . +..-+..+.+.+|.+.|....+++...
T Consensus 392 gVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNs 448 (451)
T PF04179_consen 392 GVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNS 448 (451)
T ss_pred HHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 9999998876543 1 233445555555555555555555443
No 87
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.88 E-value=0.1 Score=62.72 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHH----hcC-CCHHHHHHHHHhcCCCccCCHHH
Q 006472 177 VPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMR----SQS-MSVAQAIKKFAEVRPPGIYKNEY 251 (643)
Q Consensus 177 ~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~----~~g-~s~~eAi~~~~~~Rp~~i~~~~~ 251 (643)
+|...-...++..+.+-.++ ....+++.|||..|.||||+.+|+-++- ..+ +++=+|++.++..||..+...+|
T Consensus 995 ~p~~~~~~~~i~~~~~~~q~-~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~Q 1073 (1087)
T KOG4228|consen 995 PPQSKGPISKIPSVASKWQQ-LGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQ 1073 (1087)
T ss_pred CCCCcchhhhHHHHHHHHHh-hcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHH
Confidence 44443344444444444442 2337899999999999999998876553 333 47789999999999999998888
Q ss_pred HHHHHHH
Q 006472 252 IEALYTF 258 (643)
Q Consensus 252 l~~L~~~ 258 (643)
.+.+|+-
T Consensus 1074 Y~fcYdv 1080 (1087)
T KOG4228|consen 1074 YQFCYDV 1080 (1087)
T ss_pred HHHHHHH
Confidence 8777654
No 88
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This entry represents the N-terminal adenylation domain of NAD-dependent DNA ligases. These are proteins of about 75 to 85 Kd whose sequence is well conserved [, ]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd. Despite a complete lack of detectable sequence similarity, the fold of the central core of this adenyaltion domain shares homology with the equivalent region of ATP-dependent DNA ligases [, ].; GO: 0003911 DNA ligase (NAD+) activity; PDB: 1ZAU_A 3SGI_A 1B04_A 3JSL_A 3JSN_A 1DGS_A 1V9P_A 3PN1_A 3BAC_A 3UQ8_A ....
Probab=93.84 E-value=0.31 Score=52.09 Aligned_cols=146 Identities=17% Similarity=0.147 Sum_probs=78.9
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCCCCCcC-CcccccccCCCCeEeeEEEEEecC----------
Q 006472 331 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRN-SNEGLGEKTHHFTLLDGEMIIDKL---------- 396 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~-~~~~~~~~~~~~tlLDGElV~d~~---------- 396 (643)
.|+|++|.||.-+-|...++. +..++|.+-.. .++....... .+..+..+ .....+=||++....
T Consensus 108 ~~~~e~KiDGlsi~L~Y~~G~L~~a~TRGdG~~GeDvT~n~~~i~~iP~~i~~~-p~~~eVRGEv~m~~~~F~~ln~~~~ 186 (315)
T PF01653_consen 108 EFVVEPKIDGLSISLIYENGKLVRAATRGDGEVGEDVTHNVRTIKSIPLRIPEK-PGRLEVRGEVYMSKSDFEKLNEERE 186 (315)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEEETTSSEEEB-HHHHCTSTTS-SB-SSS-SSEEEEEEEEE--HHHHHHHHHHHH
T ss_pred ceeEeeccceeEEEEEEeCCEEEEEEEcCCCccchhHHHHHHHHhcCchhhccC-CcceEEEEEEEEehhhHHHHHHHHH
Confidence 499999999999988887765 57899964311 1111000000 00111000 245788999997421
Q ss_pred --CCC---------------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCC
Q 006472 397 --PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 453 (643)
Q Consensus 397 --~~~---------------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~ 453 (643)
+.. ....+.|++|++...+| +..-....+++..|.++-+.. ++.
T Consensus 187 ~~~~~~faNpRN~aAGsLr~~d~~~~~~r~L~f~~y~~~~~~~-~~~~~t~~e~l~~L~~~GF~v------------~~~ 253 (315)
T PF01653_consen 187 EEGEKPFANPRNAAAGSLRQKDPSITAERKLSFFAYGIGEPEG-DLGFNTQSERLQFLKEWGFPV------------NPY 253 (315)
T ss_dssp HTTS---SSHHHHHHHHHTSSSHHHHHTS--EEEEEEEEEETT-STT-SBHHHHHHHHHHTT--B-------------TT
T ss_pred HhccchhhhhhHHHHHhhhhccchhhhcCeeEEEEEEeccccc-ccChHHHHHHHHHHHHcCCCC------------Ccc
Confidence 000 02468999999999888 333345788888888743321 010
Q ss_pred ccCCCCCcEEEecceeechhHHHHHHHhc---ccccCCCceEEEEeCCCCC
Q 006472 454 YRYDLEPFRVRRKDFWLLSTVNKLLKEFI---PKLSHDADGLVFQGWDDPY 501 (643)
Q Consensus 454 ~~~~~~pf~I~~K~~~~~~~~~~ll~~~~---~~l~h~~DGLIf~p~~spY 501 (643)
+.. +-.+..+..+++.+. ..+.+..||||++-.+..+
T Consensus 254 ---------~~~--~~~~~~v~~~~~~~~~~R~~l~y~iDGiVikvn~~~~ 293 (315)
T PF01653_consen 254 ---------IRF--CKSIEEVEEYIEEWEERREELPYPIDGIVIKVNDLAL 293 (315)
T ss_dssp ---------EEE--ESSHHHHHHHHHHHHHHGCCSSS-EEEEEEEESBHHH
T ss_pred ---------eEe--cCCHHHHHHHHHHHHhhhhccccccCcEEEEecCHHH
Confidence 111 112233333344333 4789999999999866544
No 89
>PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain. RNA ligase enzyme repairs RNA strand breaks in nicked DNA:RNA and RNA:RNA but not in DNA:DNA duplexes []. Members of this RNA ligase family include: RNA editing ligase 1 (REL1) , which is essential for RNA editing and may be active in U-deletion editing [, , ]. RNA editing ligase 2 (REL2), which may be active in U-insertion editing []. RnlB RNA ligase 2 (or Rnl2), second RNA ligase of Enterobacteria phage T4 (Bacteriophage T4); unlike RNA ligase 1, RnlB prefers doule stranded substrates [, ]. ; PDB: 2HVS_B 2HVR_A 1S68_A 2HVQ_A 1XDN_A.
Probab=92.67 E-value=0.25 Score=48.27 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=54.0
Q ss_pred ceeeeecCceeEEEEEEECC-EEEEEeCCCccccccCCCCCcC-------C----c---c---ccc-ccCCCCeEeeEEE
Q 006472 331 YYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFPCRN-------S----N---E---GLG-EKTHHFTLLDGEM 391 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~-~vyLidR~~~~~~v~~~FP~~~-------~----~---~---~~~-~~~~~~tlLDGEl 391 (643)
.|.|+||.||+-+-+++..+ .+.+-.|+..+. ....|.... . . . .+. .....+.+|=||+
T Consensus 2 e~vvtEKldGtn~~i~~~~~~~~~~~~R~~~l~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GE~ 80 (186)
T PF09414_consen 2 EVVVTEKLDGTNFSIYFDNDGRVRFQSRSHILD-PNEDFFGYQSGDNRYWAQARWLFELLKLAELASELLPENIIIYGEL 80 (186)
T ss_dssp EEEEEEE-SSEEEEEEEEECTCEEEEETTEE---TT---TTCHHHHHHCHHHHHHHHHHHHHHCCEC----SEEEEEEEE
T ss_pred eEEEEEEeCCccEEEEEeCCCceeEeccccccC-ccccccccccchHHHHHHHHHHHhhhhhhhhcccccceEEEEEEEe
Confidence 68999999999998888654 477777876331 111111000 0 0 0 000 0123456667999
Q ss_pred EE--ecCCCCCC---cceEEEEeEeeecCCe-eccCCCHHHHHHHHHH
Q 006472 392 II--DKLPDSRR---QERRYLIYDMMAINQA-SVIERPFYERWKMLEK 433 (643)
Q Consensus 392 V~--d~~~~~~~---~~~~yliFDiL~~~G~-~l~~~pf~eR~~~L~~ 433 (643)
+- ........ ....|++|||...+.. ...-+++.+...+++.
T Consensus 81 ~G~~~~Iq~~~~~~~~~~~F~~Fdi~~~~~~~~~~~l~~~~~~~~~~~ 128 (186)
T PF09414_consen 81 VGAKPSIQKNRYQLDPPKDFYVFDIYDIDEQGEIRYLSWDEVREFAEE 128 (186)
T ss_dssp ECEECTTCSS----ECCCEEEEEEEEEEETCCGEEE-HHHHHHHHHCC
T ss_pred eeecccccccccccCCCceEEEEEEEEcCCCCeeEECCHHHHHHHHHH
Confidence 96 32211111 1678999999998533 3345566666666544
No 90
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=92.41 E-value=2.7 Score=44.83 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=80.4
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCCCCCcCC-cccccccCCCCeEeeEEEEEecCC---------
Q 006472 331 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKLP--------- 397 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~~~~~~~~~tlLDGElV~d~~~--------- 397 (643)
.|+|++|.||.-+-|...++. +..++|.+-.. .|+.......+ +..+. .......+=||++.....
T Consensus 102 ~~~vepKiDGlsisL~Y~~G~L~~a~TRGdG~~GeDVT~nv~~I~~IP~~i~-~~~~~levRGEv~m~~~~F~~~n~~~~ 180 (307)
T cd00114 102 AYVVEPKIDGLSISLRYENGVLVQAATRGDGTTGEDVTENVRTIRSIPLTLA-GAPETLEVRGEVFMPKADFEALNKERE 180 (307)
T ss_pred cEEEEEeccceEEEEEEECCEEEEEEecCCCcchhhHHhhHhhhcccChhhc-CCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 799999999999877777654 57899953211 11110000000 01110 002346889999984310
Q ss_pred --------C-------------C---CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCC
Q 006472 398 --------D-------------S---RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 453 (643)
Q Consensus 398 --------~-------------~---~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~ 453 (643)
+ + ....+.|++|++...++.. .....+++..|+++-+.. ++.
T Consensus 181 ~~~~~~faNpRNaaAGsLr~ld~~~~~~r~L~f~~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v------------~~~ 246 (307)
T cd00114 181 ERGEKPFANPRNAAAGSLRQLDPKITAKRPLRFFIYGLGEAEGLG--PKTQSEALAFLKEWGFPV------------SPE 246 (307)
T ss_pred HcCCCCccChHHHHHHHHHhcCcchhhcCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCC------------CCC
Confidence 0 0 0246889999986544312 246788888888743321 111
Q ss_pred ccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCC
Q 006472 454 YRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPY 501 (643)
Q Consensus 454 ~~~~~~pf~I~~K~~~~~~~~~~ll~~~---~~~l~h~~DGLIf~p~~spY 501 (643)
....+ .+..+...++.+ ...+.+..||||++-.+..+
T Consensus 247 --------~~~~~---~~~ev~~~~~~~~~~R~~l~y~iDGiViKvn~~~~ 286 (307)
T cd00114 247 --------TRLCK---NIEEVLAFYDEIEAKRDSLPYEIDGVVVKVDDLAL 286 (307)
T ss_pred --------eEEeC---CHHHHHHHHHHHHHhhhcCCCCCCcEEEEEeCHHH
Confidence 01111 123333443333 45688999999999866544
No 91
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=92.06 E-value=6.6 Score=46.33 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=86.8
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--C-CCCCcCCcccccccCCCCeEeeEEEEEecCC-------
Q 006472 331 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M-RFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP------- 397 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~-~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~------- 397 (643)
.|+|++|.||.-+-|...++. +..++|.+-.. .++ + .++.. +..+.........+-||++.....
T Consensus 109 ~~~~epKiDGlsisL~Y~~G~L~~a~TRGDG~~GeDvT~n~~~I~~I--P~~l~~~~p~~levRGEv~m~~~~F~~lN~~ 186 (665)
T PRK07956 109 TYLCELKIDGLAVSLLYENGVLVRAATRGDGTTGEDITANVRTIRSI--PLRLHGNEPERLEVRGEVFMPKADFEALNEE 186 (665)
T ss_pred ceEEEEecccEEEEEEEECCEEEEEEecCCCccchhHhhhhhhhccC--ChhhcccCCCeEEEEEEEEEEHHHHHHHHHH
Confidence 599999999999887777654 57899953211 111 1 11100 011100112346789999984321
Q ss_pred -----C-----C----------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCC
Q 006472 398 -----D-----S----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRN 451 (643)
Q Consensus 398 -----~-----~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~ 451 (643)
+ + ....+.|++|++...++ ........+++..|.++-+.. +
T Consensus 187 ~~~~g~~~faNpRNaaAGslr~ld~~~~~~r~L~f~~y~~~~~~~-~~~~~t~~e~l~~L~~~GF~v------------~ 253 (665)
T PRK07956 187 RREEGEKPFANPRNAAAGSLRQLDPKITAKRPLSFFAYGVGEVEG-GELPDSQSEALEFLKAWGFPV------------N 253 (665)
T ss_pred HHhcCCCcccChHHHHhhhhhccChHHHhcCCCEEEEEecccccC-CCCCCCHHHHHHHHHHCCCCc------------C
Confidence 0 0 02468899999864431 111235678888887743211 0
Q ss_pred CCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCC------CccCCCCCeEEEecCCC
Q 006472 452 PYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARM 517 (643)
Q Consensus 452 p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~---~~~l~h~~DGLIf~p~~sp------Y~~G~~~~llKWKP~~~ 517 (643)
+...... .+..+...++.+ ...+++..||||++-.+.. |..+....-+=||++..
T Consensus 254 --------~~~~~~~---~~~ei~~~~~~~~~~R~~l~y~iDGiViKvn~~~~~~~lG~t~~~PrWaiA~Kf~~~ 317 (665)
T PRK07956 254 --------PYRKLCT---SIEEVLAFYEEIEEERHDLPYDIDGVVIKVDDLALQEELGFTAKAPRWAIAYKFPAE 317 (665)
T ss_pred --------CceEeeC---CHHHHHHHHHHHHHhhccCCCCCCcEEEEecCHHHHHhcCccCCCCCceeEecCCCc
Confidence 1111111 123333333333 3578899999999986533 33333345566676654
No 92
>PF05098 LEF-4: Late expression factor 4 (LEF-4); InterPro: IPR007790 The baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) virus encodes a DNA-dependent RNA polymerase that is required for transcription of viral late genes. This polymerase is composed of four equimolar subunits, LEF-8, LEF-4, LEF-9, and p47. LEF-4 carries out all the enzymatic functions related to mRNA capping []. ; GO: 0006355 regulation of transcription, DNA-dependent
Probab=91.99 E-value=3.8 Score=45.38 Aligned_cols=206 Identities=16% Similarity=0.212 Sum_probs=109.2
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEEecCCCCCCcceEEEE
Q 006472 329 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLI 408 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~~~~~~yli 408 (643)
..-++..-|.||+|.=-+++.+.+++.-=++.++...+. |.+ + ....-+-|=-|+|-+. +|+|
T Consensus 233 ~dv~~WAlKLDGvRGkG~~~~~~~~i~~DDMq~fsg~l~-~~~-----f--~~Nnvv~fQcE~i~~~---------~~YI 295 (450)
T PF05098_consen 233 SDVKKWALKLDGVRGKGYFTNGFIIIQMDDMQMFSGKLD-PSP-----F--SLNNVVAFQCELIDDE---------TFYI 295 (450)
T ss_pred cceeEEEEeecccceeeEEeccEEEEEEchhhhhhcccc-cch-----h--hcccEEEEEEEEecCc---------eEEE
Confidence 345778889999999988888877776555554433320 111 1 0123356677777432 5888
Q ss_pred eEeeec-----CCeeccCCCH-------HHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHH
Q 006472 409 YDMMAI-----NQASVIERPF-------YERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNK 476 (643)
Q Consensus 409 FDiL~~-----~G~~l~~~pf-------~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ 476 (643)
=|+|.+ |.+..-+..+ ..=..+|... ......+ .+ .......+.|++-.|+..-...
T Consensus 296 TDlL~VfkY~YnNrtQYe~s~~~Y~id~~~Ai~~ln~l--~~~~~~~-~l-------~~~~~~~~~vkFQ~F~~~p~~~- 364 (450)
T PF05098_consen 296 TDLLHVFKYKYNNRTQYECSLDPYNIDPLDAIECLNYL--NNANKKI-TL-------KTNTNKTISVKFQQFFDPPLNV- 364 (450)
T ss_pred eeeeeeEEEeccCcceeEeccCccccCHHHHHHHHHHh--hccccce-EE-------eccCCceEEEEEEeecCCcccc-
Confidence 888864 3222222222 2233344421 0000000 00 0011334667776666532100
Q ss_pred HHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEEEecCCceeEEEEeCCeeeeecCceeEecCCC
Q 006472 477 LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDRE 556 (643)
Q Consensus 477 ll~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKP~~~nTvDF~l~~~~~~~~~L~~~~~g~~~~~~~~~~~f~~~~ 556 (643)
. -.-.-.+||.|.--.+. .+.|.|. .-|+...-.. ....|....|.- ....+. .+
T Consensus 365 --~---~y~t~ptDGfVvld~~~--------~yvKyK~--~kT~EleYd~----~~~~F~~~~G~~---~~~~i~---~~ 419 (450)
T PF05098_consen 365 --N---GYSTVPTDGFVVLDSNG--------RYVKYKY--VKTVELEYDA----GNNTFKSLFGPL---KNYEIV---SD 419 (450)
T ss_pred --C---CcccCCcCCEEEECCCC--------CEEEEee--cceEEEEEEc----CCCeEEcCCCcc---ccceec---cc
Confidence 0 01234789998877554 4446663 4466655422 223343332321 111111 23
Q ss_pred CCCCCceEEEEEEeCCCCeeEEEEEecCCCCCC
Q 006472 557 PSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPN 589 (643)
Q Consensus 557 ~~~~dg~IvEc~~d~~~~~W~~~R~R~DK~~pN 589 (643)
.....|.|-||.... ..-..++.|+|.-.||
T Consensus 420 ~~l~~~~IYE~vi~d--~~i~ViK~RpDRlvpn 450 (450)
T PF05098_consen 420 VQLEHGSIYECVITD--NVINVIKERPDRLVPN 450 (450)
T ss_pred cCccCCCEEEEEEEC--CEEEEEeeCCccCCCC
Confidence 335689999999974 6679999999999998
No 93
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=91.78 E-value=0.55 Score=52.36 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=85.6
Q ss_pred CCCCCCcccccc-hhhhhh-hcccceeeeecCceeEEEEEEECCEEEEEeCC--CccccccCCCCCcCCcccccccCCCC
Q 006472 309 MQFPGSHPVSLN-SDNLQL-LRQRYYYATWKADGTRYMMLITIDGCYLIDRC--FNFRRVQMRFPCRNSNEGLGEKTHHF 384 (643)
Q Consensus 309 ~~FPGsqPVsls-r~~l~~-l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~--~~~~~v~~~FP~~~~~~~~~~~~~~~ 384 (643)
.+|| |.+|+ ...|.. .--.+|+..+-.--.-.||....+..|+++=. +....+...+ +..+.+
T Consensus 570 ~s~p---~t~l~~~a~L~~t~pv~dyrfvp~gse~~nll~l~ks~~~~~rytes~rwe~i~~~~----------e~~Pr~ 636 (845)
T KOG3673|consen 570 NSFP---DTSLNCDAPLPNTIPVEDYRFVPLGSESPNLLILAKSSAFIFRYTESGRWESISADH----------ERIPRN 636 (845)
T ss_pred ccCC---chhccccccCccCcccceeEEEeccCCCcceEEEecccceEecccccCceEEeeccc----------eecccc
Confidence 4566 55555 334433 23346665554333444555555566665422 2222222111 112456
Q ss_pred eEeeEEEEEecCCCCCC--cceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcE
Q 006472 385 TLLDGEMIIDKLPDSRR--QERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFR 462 (643)
Q Consensus 385 tlLDGElV~d~~~~~~~--~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~pf~ 462 (643)
|+|=-++|....+.+.. ..-..-|.|.++++|.+|.++||.+|..+.++++..-.. |. +..+.--.
T Consensus 637 t~l~v~iv~E~~GeGk~~~~~~avhIiD~~vL~G~Dvr~~py~eR~~~aeKFv~al~k-----------p~-Rkd~~~~a 704 (845)
T KOG3673|consen 637 TILLVDIVEEVVGEGKISSEPQAVHIIDAAVLFGDDVRNLPYEERMKAAEKFVAALKK-----------PN-RKDKKHRA 704 (845)
T ss_pred eeehHHHHHHHhcCccccccchheeeeeeeeecCchhhcccHHHHHHHHHHHHHHhcC-----------CC-Cccccccc
Confidence 77654555443322211 234577899999999999999999999999998732110 10 01111113
Q ss_pred EEecceeechhHHHHHHHhc-ccccCCC
Q 006472 463 VRRKDFWLLSTVNKLLKEFI-PKLSHDA 489 (643)
Q Consensus 463 I~~K~~~~~~~~~~ll~~~~-~~l~h~~ 489 (643)
++.|+-|.+...+++|.++. ..+.|.+
T Consensus 705 ~r~Kp~yrL~em~~ff~nlehy~lk~ns 732 (845)
T KOG3673|consen 705 ERIKPTYRLAEMDEFFSNLEHYKLKHNS 732 (845)
T ss_pred eecccceeHHHHHHHHHhhhhhhhcCCc
Confidence 78888888888887776432 2455544
No 94
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=91.09 E-value=1.3 Score=47.23 Aligned_cols=107 Identities=13% Similarity=0.023 Sum_probs=61.0
Q ss_pred hcccceeeeecCceeEEEEEEECC-EEEEEeCCCccccccCCCC--CcCC-c--------cccccc---CCCCeEeeEEE
Q 006472 327 LRQRYYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFP--CRNS-N--------EGLGEK---THHFTLLDGEM 391 (643)
Q Consensus 327 l~~~~Y~V~eK~DG~R~ll~i~~~-~vyLidR~~~~~~v~~~FP--~~~~-~--------~~~~~~---~~~~tlLDGEl 391 (643)
+....|.|+||.||.-+-++++++ .+..-+|++.+..-...|- .... . +.+... .....++=||+
T Consensus 22 l~~~ewvatEKlhGaNfsi~~~~~~~i~~akR~~~l~~~e~f~G~~~i~~~l~~~~~~l~~~l~~~~~~~~~~v~IyGEl 101 (325)
T TIGR02307 22 LGLTEWVAREKIHGTNFSIIIERDFKVTCAKRTGIILPNEDFFGYHILIKNYTASVKAIQDILETKAIIVVVSVQVFGEL 101 (325)
T ss_pred cCCceEEEEEEecCcceEEEEeCCceEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHhhhcccccceEEEEEEe
Confidence 556699999999999999888877 7878888865432111110 0000 0 000000 12446788999
Q ss_pred EEecCCCCCC-cceEEEEeEeeecCCeeccCCCHHHHHHHHHH
Q 006472 392 IIDKLPDSRR-QERRYLIYDMMAINQASVIERPFYERWKMLEK 433 (643)
Q Consensus 392 V~d~~~~~~~-~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~ 433 (643)
+.-...+... ....|++|||......+..-+++.+-...+.+
T Consensus 102 ~G~~~q~~~~Y~~~~fyaFdI~~~~~~~~~~L~~d~~~e~~~~ 144 (325)
T TIGR02307 102 AGPGYQKPVVYSDKDFYAFDIKYTETSDDVTLVDDYMMESFCN 144 (325)
T ss_pred ecCcccCccccccccEEEEEEEEeccCcceEecHHHHHHHHHH
Confidence 8543222110 13689999996642222445666665555544
No 95
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=90.78 E-value=14 Score=43.69 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=84.5
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCCCCCcCCcccccccC--CCCeEeeEEEEEecC---------
Q 006472 331 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNSNEGLGEKT--HHFTLLDGEMIIDKL--------- 396 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~~~~~~~~~--~~~tlLDGElV~d~~--------- 396 (643)
.|+|++|.||.-+-|...++. +..++|.+-.. .++...- ...++.... .....+-||++....
T Consensus 111 ~~~~epKiDGlaisL~YenG~L~~a~TRGDG~~GEDVT~n~~---~I~~IP~~l~~~~~levRGEv~m~~~~F~~lN~~~ 187 (669)
T PRK14350 111 GISVEPKIDGCSIVLYYKDGILEKALTRGDGRFGNDVTENVR---TIRNVPLFIDEKVELVLRGEIYITKENFLKINKTL 187 (669)
T ss_pred eEEEEEecccEEEEEEEECCEEEEEEecCCCCcchhHhhhhh---hhcccchhcCCCceEEEEEEEEeeHHHHHHHHHhh
Confidence 699999999999987777654 57899964211 1111000 001111111 134678999998431
Q ss_pred ----CCC----------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccC
Q 006472 397 ----PDS----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRY 456 (643)
Q Consensus 397 ----~~~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~ 456 (643)
.++ ....+.|++|++...++ ......++++.|.++-+.. +|.
T Consensus 188 ~~~faNpRNaaAGsLr~~d~~~~a~r~L~f~~y~~~~~~~---~~~t~~e~l~~L~~~GF~v------------~~~--- 249 (669)
T PRK14350 188 EKPYTNARNLASGILRRIDSREVANFPLDIFVYDILYSSL---ELKTNHDAFDKLKKFGFKV------------NPF--- 249 (669)
T ss_pred hccCCChhHHHHHHHHccCchhhhcCceEEEEEEcccCCC---CCCCHHHHHHHHHHCCCCC------------Ccc---
Confidence 000 11368899999853222 1235678888888743321 111
Q ss_pred CCCCcEEEecceeechhHHHHHH---HhcccccCCCceEEEEeCCCC------CccCCCCCeEEEecCCCc
Q 006472 457 DLEPFRVRRKDFWLLSTVNKLLK---EFIPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARMN 518 (643)
Q Consensus 457 ~~~pf~I~~K~~~~~~~~~~ll~---~~~~~l~h~~DGLIf~p~~sp------Y~~G~~~~llKWKP~~~n 518 (643)
.......-.+..+...++ .....+.+..||||++-.+.. |..+....-+=||++...
T Consensus 250 -----~~~~~~~~~~~e~~~~~~~~~~~R~~l~y~iDGiViKvn~~~~q~~lG~ts~~PrWaiA~Kf~~~~ 315 (669)
T PRK14350 250 -----CRFFDGKNSIEEILNYVKDIEKKRNSFEYEIDGVVLKVSDFALREILGYTSHHPKWSMAYKFESLS 315 (669)
T ss_pred -----eEEEcCCCcHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHhcCCcCCCCCceEEEcCCCce
Confidence 001000000112222222 223568899999999985542 333223455666666443
No 96
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=90.42 E-value=8.8 Score=45.23 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=86.8
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--CC-CCCcCCcccccc-cCCCCeEeeEEEEEecC-------
Q 006472 331 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--MR-FPCRNSNEGLGE-KTHHFTLLDGEMIIDKL------- 396 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~~-FP~~~~~~~~~~-~~~~~tlLDGElV~d~~------- 396 (643)
.|+|++|.||.-+-|...++. +..++|.+-.. .++ +. .+. .+..+.. .......+-||++....
T Consensus 97 ~~~~epKiDGlaisL~Ye~G~L~~a~TRGDG~~GeDvT~nv~~I~~--iP~~i~~~~~p~~levRGEv~m~~~~F~~~N~ 174 (652)
T TIGR00575 97 EYVVEPKIDGLSVSLTYENGVLVRALTRGDGTVGEDVTANVRTIRS--IPLRLAGDNPPERLEVRGEVFMPKEDFEALNE 174 (652)
T ss_pred eEEEEEeccceEEEEEEECCEEEEEEecCCCccchhHhhhhhhhcc--cchhhcCCCCCceEEEEEEEEEEHHHHHHHHH
Confidence 599999999999987777665 57899963211 111 11 000 0011100 01234678999998421
Q ss_pred -----C-----CC----------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccC
Q 006472 397 -----P-----DS----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSR 450 (643)
Q Consensus 397 -----~-----~~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~ 450 (643)
+ ++ ....+.|++|++.. +.........+++..|.++-+..
T Consensus 175 ~~~~~g~~~faNpRN~aAGslr~ld~~~~~~r~L~~~~y~~~~--~~~~~~~t~~e~l~~L~~~GF~v------------ 240 (652)
T TIGR00575 175 ERREQGEKPFANPRNAAAGSLRQLDPRITAKRKLRFFAYGLGE--GLELPDATQYEALAWLKKWGFPV------------ 240 (652)
T ss_pred HHHHcCCCCCCCcHHHHHHHHHcCCchhhhcCccEEEEEeccc--cCCCCCCCHHHHHHHHHHCCCCC------------
Confidence 0 00 02468899999852 22222246678888887743321
Q ss_pred CCCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCC------ccCCCCCeEEEecCCCc
Q 006472 451 NPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPY------VPRTHEGLLKWKYARMN 518 (643)
Q Consensus 451 ~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~---~~~l~h~~DGLIf~p~~spY------~~G~~~~llKWKP~~~n 518 (643)
++ .....+ .+..+...++.+ ...+++..||+|++-.+.++ ..+....-+=||+|...
T Consensus 241 ~~--------~~~~~~---~~~ei~~~~~~~~~~R~~l~y~iDGiViKvn~~~~~~~lG~t~~~PrwaiA~Kf~~~~ 306 (652)
T TIGR00575 241 SP--------HIRLCD---SIEEVLEYYREIEEKRDSLPYEIDGVVVKVDDLALQDELGFTSKAPRWAIAYKFPAEE 306 (652)
T ss_pred CC--------CeEeeC---CHHHHHHHHHHHHHhhhcCCCCCCcEEEEecCHHHHHHhCccCCCCCceEEEcCCCce
Confidence 11 111111 122333333322 35788999999999866544 22223455667777543
No 97
>smart00532 LIGANc Ligase N family.
Probab=90.25 E-value=3.1 Score=46.62 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=88.2
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCCCCCcC-CcccccccCCCCeEeeEEEEEecCC---------
Q 006472 331 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRN-SNEGLGEKTHHFTLLDGEMIIDKLP--------- 397 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~-~~~~~~~~~~~~tlLDGElV~d~~~--------- 397 (643)
.|+|++|.||.-+-|...++. +..++|.+-.. .++....... .+..+.........+-||++.....
T Consensus 104 ~~~~epKiDGlsisL~Ye~G~l~~a~TRGDG~~GeDVT~nv~~i~~iP~~i~~~~p~~leiRGEv~~~~~~F~~ln~~~~ 183 (441)
T smart00532 104 AYVVEPKIDGLSVSLLYENGKLVQAATRGDGTVGEDVTQNVKTIRSIPLRLSGDVPERLEVRGEVFMPKEDFLALNEELE 183 (441)
T ss_pred eEEEEEecccEEEEEEEECCEEEEEEecCCCCcceehhhhhhhhcCcChhhcccCCCeEEEEceEEEEHHHHHHHHHHHH
Confidence 699999999999887777665 67899953211 1111000000 0011100012246788999985420
Q ss_pred --------CC----------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCC
Q 006472 398 --------DS----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 453 (643)
Q Consensus 398 --------~~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~ 453 (643)
+. ....+.|++|++...++... .....+++..|.++-+.. +
T Consensus 184 ~~g~~~faNpRN~aAG~lr~ld~~~~~~r~L~~~~y~~~~~~~~~~-~~t~~e~l~~L~~~GF~v------------~-- 248 (441)
T smart00532 184 EEGEKPFANPRNAAAGSLRQLDPRITAKRKLRAFFYGLGTGEELFL-PKTQSEALKWLKELGFPV------------S-- 248 (441)
T ss_pred hcCCCcccChHHHHHHHHHhcCchhhhhccceEEEEEcccCCCCCC-ccCHHHHHHHHHHCCCCC------------C--
Confidence 00 01368899999864443211 235788888888743211 1
Q ss_pred ccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCCcc--CC----CCCeEEEecCCC
Q 006472 454 YRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPYVP--RT----HEGLLKWKYARM 517 (643)
Q Consensus 454 ~~~~~~pf~I~~K~~~~~~~~~~ll~~~---~~~l~h~~DGLIf~p~~spY~~--G~----~~~llKWKP~~~ 517 (643)
+..-..+ .+..+....+.+ ...+.+..||||++-.+..+.- |. ...-+=||++..
T Consensus 249 ------~~~~~~~---~~~ei~~~~~~~~~~r~~l~y~iDGiViKvn~~~~~~~lG~ts~~PrwaiA~Kf~~~ 312 (441)
T smart00532 249 ------PHTRLCK---NADEVIEYYEEWEEKRAELPYEIDGVVVKVDDLALQRELGFTSKAPRWAIAYKFPAE 312 (441)
T ss_pred ------CCeEeeC---CHHHHHHHHHHHHHhcccCCCCcCcEEEEecCHHHHHHhCccCCCCCeeEEECCCCc
Confidence 1111111 122333333332 3568899999999987765543 42 334566776654
No 98
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=89.99 E-value=11 Score=43.62 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=85.8
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--C-CCCCcCCcccccccCCCCeEeeEEEEEecCC-------
Q 006472 331 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M-RFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP------- 397 (643)
Q Consensus 331 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~-~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~------- 397 (643)
.|++++|.||.=+-|...++. +..++|.+-.. .|+ + .++.. +..+. .......+-||++.....
T Consensus 119 ~~~vepKiDGlsisL~Ye~G~Lv~a~TRGDG~~GEDVT~nv~~I~~I--P~~l~-~~~~~levRGEv~m~~~~F~~~~~g 195 (562)
T PRK08097 119 DLWVQPKVDGVAVTLVYRDGKLVQAISRGNGLKGEDWTAKARLIPAI--PQQLP-GALANLVLQGELFLRREGHIQQQMG 195 (562)
T ss_pred ceEEEEecccEEEEEEEECCEEEEEEecCCCccchhHHhhHhhhccc--chhhc-CCCCeEEEEEEEEEeHHHHHHHhcC
Confidence 699999999999888777654 57899964211 111 0 11100 01110 001246789999984321
Q ss_pred --CC---------------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006472 398 --DS---------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 460 (643)
Q Consensus 398 --~~---------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~~p~~~~~~~p 460 (643)
++ ....+.|++|++. +| .....+++..|.++-+.- ++.
T Consensus 196 ~aNPRN~AAGsLr~~d~~~~~r~L~~f~y~~~--~~----~~t~~e~l~~L~~~GF~v------------~~~------- 250 (562)
T PRK08097 196 GINARAKVAGLMMRKDPSPTLNQIGVFVWAWP--DG----PASMPERLAQLATAGFPL------------TQR------- 250 (562)
T ss_pred cCCchHHHhHHHhhcCcHhhhccceEEEEECC--CC----CCCHHHHHHHHHHCCCCc------------Ccc-------
Confidence 00 0135779999973 44 235778888887643210 110
Q ss_pred cEEEecceeechhHHHHHHHh-cccccCCCceEEEEeCCCCCccCC----CCCeEEEecCCCc
Q 006472 461 FRVRRKDFWLLSTVNKLLKEF-IPKLSHDADGLVFQGWDDPYVPRT----HEGLLKWKYARMN 518 (643)
Q Consensus 461 f~I~~K~~~~~~~~~~ll~~~-~~~l~h~~DGLIf~p~~spY~~G~----~~~llKWKP~~~n 518 (643)
+..... .+..+....+.+ ...+.++.||||++-.+..|.-|. ...-+=||++...
T Consensus 251 ~~~~~~---~~~~i~~~~~~~~r~~l~y~iDGiViKvn~~~~~~~~ts~~PrWAiAyKf~~~~ 310 (562)
T PRK08097 251 YTHPVK---NAEEVARWRERWYRAPLPFVTDGVVVRQAKEPPGRYWQPGQGEWAVAWKYPPVQ 310 (562)
T ss_pred ceEeeC---CHHHHHHHHHHHhhccCCCCCCcEEEEecCHHHHhhccCCCCCceEEEcCCCcE
Confidence 111111 123333333332 356789999999998776665442 2345556666543
No 99
>PHA02142 putative RNA ligase
Probab=89.72 E-value=2.6 Score=45.72 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=57.9
Q ss_pred cccceeeeecCceeEEEEEEEC---------------------CEEEEEeCCCccccc-cCCCCCcCCccccccc---CC
Q 006472 328 RQRYYYATWKADGTRYMMLITI---------------------DGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEK---TH 382 (643)
Q Consensus 328 ~~~~Y~V~eK~DG~R~ll~i~~---------------------~~vyLidR~~~~~~v-~~~FP~~~~~~~~~~~---~~ 382 (643)
+...|.+|+|.||+-+-++... +...+-+|++.+... +-.|-......++.+. ..
T Consensus 167 ~~~~f~~TeKLDGsS~tvy~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~srn~~l~~~~~~~~W~~a~~~~i~~~l~~~~ 246 (366)
T PHA02142 167 ADVKFAKSLKLDGSSITMAWVTDPDLFLDLGTEDEPYAHDYDDAQFIVASRNQVLRYNADSKWWKGVENYQIVDRLKELG 246 (366)
T ss_pred cCceEEEEEEecceeEEEEEecCCcccccccccccccccccCCCceeEeeccccccccCCchHHHHHHHcCcHHHHHhhC
Confidence 3568999999999999888441 122334555442100 0000000000111111 12
Q ss_pred CCeEeeEEEEEecCCCC--CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHH
Q 006472 383 HFTLLDGEMIIDKLPDS--RRQERRYLIYDMMAINQASVIERPFYERWKMLEKE 434 (643)
Q Consensus 383 ~~tlLDGElV~d~~~~~--~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~ 434 (643)
.+..+=||++--...+. ......|++||+..++++. =+++.++..++++.
T Consensus 247 ~~iaIqGEl~Gp~IQ~N~~~~~~~~F~vF~v~~i~~~~--yl~~~e~~~~~~~~ 298 (366)
T PHA02142 247 MSVAIQGELMGPGIQKNRENFDKYRIFAFRAWFIDEQR--FATDEEFQDLCRTL 298 (366)
T ss_pred CcEEEEEEEecccccCccccCCCCceEEEEEEEeccce--eCCHHHHHHHHHHc
Confidence 46778999996432111 0123689999998777654 56778888777764
No 100
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=87.97 E-value=17 Score=43.15 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=86.4
Q ss_pred cceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--CC-CCCcCCcccccccCCCCeEeeEEEEEecC-------
Q 006472 330 RYYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--MR-FPCRNSNEGLGEKTHHFTLLDGEMIIDKL------- 396 (643)
Q Consensus 330 ~~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~~-FP~~~~~~~~~~~~~~~tlLDGElV~d~~------- 396 (643)
..|++++|.||+=+-|...++. +..++|.+-.. .++ +. .+. .+..+.........+=||++....
T Consensus 132 ~~~~~epKiDGlaisL~Ye~G~L~~a~TRGDG~~GeDVT~nv~~I~~--IP~~l~~~~p~~levRGEv~m~~~~F~~lN~ 209 (689)
T PRK14351 132 VEYVCEPKFDGLSVEVVYEDGEYQRAATRGDGREGDDVTANVRTIRS--VPQKLRGDYPDFLAVRGEVYMPKDAFQAYNR 209 (689)
T ss_pred ceEEEEEecccEEEEEEEECCEEEEEEecCCCCcceeHhhhhhhhcc--cchhhcccCCCeEEEEEEEEEEHHHHHHHHH
Confidence 3699999999999988877664 57899953211 111 11 000 001110001123567899998432
Q ss_pred -----CC------------C---------CCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccC
Q 006472 397 -----PD------------S---------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSR 450 (643)
Q Consensus 397 -----~~------------~---------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~~~~~ 450 (643)
+. . ....+.|++|++...++. .....+++..|.++-+.-
T Consensus 210 ~~~~~g~~~faNpRN~aAGslR~ldp~~~~~r~L~f~~y~~~~~~~~---~~t~~e~l~~L~~~GF~v------------ 274 (689)
T PRK14351 210 ERIERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFDVLDASEL---FDSHWEELERFPEWGLRV------------ 274 (689)
T ss_pred HHHHcCCCCcCCHHHHHhhHhhccChHHHhcCCceEEEEecccCCCC---CCCHHHHHHHHHHCCCCc------------
Confidence 10 0 014688999998654431 235677888887643211
Q ss_pred CCCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCC------ccCCCCCeEEEecCCC
Q 006472 451 NPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPY------VPRTHEGLLKWKYARM 517 (643)
Q Consensus 451 ~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~---~~~l~h~~DGLIf~p~~spY------~~G~~~~llKWKP~~~ 517 (643)
++. ..... .+..+....+.+ ...+++..||||++-.+..+ ..+....-+=||++..
T Consensus 275 ~~~--------~~~~~---~~~~~~~~~~~~~~~R~~l~y~iDGiViKvn~~~~q~~lG~ts~~PrWaiA~Kf~~~ 339 (689)
T PRK14351 275 TDR--------TERVD---DIDDAIAYRDRLLAARDDLNYEIDGVVIKVDDRDAREELGATARAPRWAFAYKFPAR 339 (689)
T ss_pred CCc--------eEeeC---CHHHHHHHHHHHHHhhhcCCCCCceEEEEeCCHHHHHHhCccCCCCCceEEEcCCCc
Confidence 010 01111 122222222322 35688999999999866544 3223345566776654
No 101
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=87.04 E-value=4.6 Score=34.99 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=20.6
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++..|+|+|..| +||.. ++.+| ...|++
T Consensus 59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 4667999999988 68864 44555 456774
No 102
>PLN02160 thiosulfate sulfurtransferase
Probab=80.58 E-value=5.4 Score=37.14 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=20.0
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++..|+|||..| +||... +..| ...|++
T Consensus 79 ~~~~~IivyC~sG-~RS~~A-a~~L-~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA-TTEL-VAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH-HHHH-HHcCCC
Confidence 3567899999999 688744 3334 456764
No 103
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=77.90 E-value=15 Score=31.59 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=20.1
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++..|+|+|..| +||. .++..|. ..|++
T Consensus 59 ~~~~~ivv~C~~G-~rs~-~aa~~L~-~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKE-GSSQ-FVAELLA-ERGYD 87 (100)
T ss_pred CCCCeEEEEcCCC-CcHH-HHHHHHH-HcCce
Confidence 3567999999999 4774 4555554 46774
No 104
>PRK01415 hypothetical protein; Validated
Probab=75.57 E-value=22 Score=36.80 Aligned_cols=106 Identities=20% Similarity=0.135 Sum_probs=55.4
Q ss_pred ccCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCC
Q 006472 100 IGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPD 179 (643)
Q Consensus 100 I~~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~ 179 (643)
+...|++|..|- .+.....+..-+|.++.+.+.. .=..|||+.+.. ++.... +++. ..|+
T Consensus 92 ~k~eiV~~g~~~---~~~~~~~g~~i~p~e~~~ll~~---~~~vvIDVRn~~------E~~~Gh-------i~gA-inip 151 (247)
T PRK01415 92 LKKEIVAMNVDD---LNVDLFKGEYIEPKDWDEFITK---QDVIVIDTRNDY------EVEVGT-------FKSA-INPN 151 (247)
T ss_pred eeceEEecCCCC---CCccccCccccCHHHHHHHHhC---CCcEEEECCCHH------HHhcCC-------cCCC-CCCC
Confidence 345667777641 1111123455678887776642 224589998542 332111 1221 2233
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 180 NASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 180 ~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
...+.+|-..+..... ..++++|+++|+.|. ||. .++++|.+ +|++
T Consensus 152 ~~~f~e~~~~~~~~~~--~~k~k~Iv~yCtgGi-Rs~-kAa~~L~~-~Gf~ 197 (247)
T PRK01415 152 TKTFKQFPAWVQQNQE--LLKGKKIAMVCTGGI-RCE-KSTSLLKS-IGYD 197 (247)
T ss_pred hHHHhhhHHHHhhhhh--hcCCCeEEEECCCCh-HHH-HHHHHHHH-cCCC
Confidence 3334443322222111 346789999999994 774 56677754 5764
No 105
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.41 E-value=7.6 Score=44.26 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=23.6
Q ss_pred cccCCCeEEEEcCCCCChhHHHHHHHHHH
Q 006472 197 QKHSKKYILVHCTHGHNRTGYMIVHFLMR 225 (643)
Q Consensus 197 ~~~~~~~VlVHC~~G~~RSG~li~aYLm~ 225 (643)
....+..|+|||.-|-.||+-+++..++-
T Consensus 370 Ve~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 370 VESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 34567899999999999999988765553
No 106
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=68.61 E-value=22 Score=37.99 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 006472 122 GKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSK 201 (643)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~ 201 (643)
....++.++.+.+.. .+ ..|||+.+.. ++.... ++|. ..++...+..|...+.+.+. ..++
T Consensus 111 ~~~is~~el~~~l~~--~~-~vlIDVR~~~------E~~~Gh-------I~GA-i~ip~~~~~~~~~~l~~~~~--~~kd 171 (314)
T PRK00142 111 GTYLKPKEVNELLDD--PD-VVFIDMRNDY------EYEIGH-------FENA-IEPDIETFREFPPWVEENLD--PLKD 171 (314)
T ss_pred CcccCHHHHHHHhcC--CC-eEEEECCCHH------HHhcCc-------CCCC-EeCCHHHhhhhHHHHHHhcC--CCCc
Confidence 345678888766542 23 4699998542 332211 1221 12223334444333322222 2367
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 202 KYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 202 ~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
++|+|||+.|. ||. .+++||.. .|++
T Consensus 172 k~IvvyC~~G~-Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 172 KKVVMYCTGGI-RCE-KASAWMKH-EGFK 197 (314)
T ss_pred CeEEEECCCCc-HHH-HHHHHHHH-cCCC
Confidence 89999999994 775 45667765 5764
No 107
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=67.61 E-value=29 Score=29.83 Aligned_cols=91 Identities=18% Similarity=0.338 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCc-EEEEeeccCC---CCCCCHHHHHHHHHHHHHHHHhcccCC
Q 006472 126 SFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGI-KHVKIQCKGR---DAVPDNASVNNFVYEVTQFLSRQKHSK 201 (643)
Q Consensus 126 ~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI-~y~~ip~~d~---~~~P~~~~i~~f~~~v~~fi~~~~~~~ 201 (643)
||+++.+.+ +..=-+|||+... .++....| .-+++|.... ........+..+. .........+
T Consensus 1 s~~el~~~l---~~~~~~liD~R~~------~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 67 (113)
T PF00581_consen 1 SPEELKEML---ENESVLLIDVRSP------EEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFL----KELGKKIDKD 67 (113)
T ss_dssp -HHHHHHHH---TTTTEEEEEESSH------HHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHH----HHHTHGSTTT
T ss_pred CHHHHHhhh---hCCCeEEEEeCCH------HHHHcCCCCCCcccccccccccccccccccccccc----cccccccccc
Confidence 466777665 3344569999843 23332222 1366666321 1222233333322 2222223466
Q ss_pred CeEEEEcCCCCChhHHHHHH---HHHHhcCCC
Q 006472 202 KYILVHCTHGHNRTGYMIVH---FLMRSQSMS 230 (643)
Q Consensus 202 ~~VlVHC~~G~~RSG~li~a---YLm~~~g~s 230 (643)
..|+|+|..|. |++..+++ |.+...|++
T Consensus 68 ~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 68 KDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp SEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 78999996664 55555444 445555664
No 108
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.
Probab=65.36 E-value=44 Score=36.24 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=51.5
Q ss_pred ccceeeeecCceeEEEEEEEC-CEEEEE------eCCCccccc-cCCCCCcCCccccccc----C-CCCeEeeEEEEEec
Q 006472 329 QRYYYATWKADGTRYMMLITI-DGCYLI------DRCFNFRRV-QMRFPCRNSNEGLGEK----T-HHFTLLDGEMIIDK 395 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~-~~vyLi------dR~~~~~~v-~~~FP~~~~~~~~~~~----~-~~~tlLDGElV~d~ 395 (643)
...|.+|+|.||+-+.++... ++-|+. +|+..+..- +-.|-......++.+. . ....-+=||++--.
T Consensus 158 ~~~~~~TeKldGss~tv~~~~~~~~~~~~~~Gvcsr~~~l~~~~~~~~W~~a~~~~i~~~l~~~~~~~~vaiqGEl~G~g 237 (341)
T TIGR02306 158 GEKVAKTEKLHGTSITVAWVTDEERFLVLSKGVASRNLVLRENADNKYWKAVENYQIVDRAKAAELRMSVAIFGEVMGPG 237 (341)
T ss_pred CceEEEEEEecceeEEEEEecCCcccccccceeecCCcccccCCCchhHHHHHhcChHHHHhhcccCceEEEEEEEeCcc
Confidence 368999999999998777543 222222 355442210 0011000000111111 1 23456889998542
Q ss_pred CCC--CCCcceE-EEEeEeeecCCeeccCCCHHHHHHHHHHH
Q 006472 396 LPD--SRRQERR-YLIYDMMAINQASVIERPFYERWKMLEKE 434 (643)
Q Consensus 396 ~~~--~~~~~~~-yliFDiL~~~G~~l~~~pf~eR~~~L~~~ 434 (643)
..+ ....... +.+|++ ..+|.. .=++..++..++.+.
T Consensus 238 IQ~n~Yg~~~~~~~f~F~v-~~~~~~-ryld~~~~~~~~~~~ 277 (341)
T TIGR02306 238 IQKNRYGFDKYRTVFAFRA-FFDGEQ-RFLTDEDFQDLCLTL 277 (341)
T ss_pred ccCCcCCCCCCceEEEEEE-EEcCcc-eecCHHHHHHHHHhc
Confidence 211 1112234 667776 334432 345788888877763
No 109
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=65.12 E-value=13 Score=40.44 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.0
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHH
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHF 222 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aY 222 (643)
..+..|+|||..|-.||+-+++.-
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 578899999999999997665533
No 110
>PRK05320 rhodanese superfamily protein; Provisional
Probab=64.68 E-value=45 Score=34.62 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHcC---CCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhccc
Q 006472 123 KRYSFKQVIHQLRVLG---RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKH 199 (643)
Q Consensus 123 ~~~~~~~l~~~~~~~~---~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~ 199 (643)
...++.++.+.++... ..-..|||+.+.. ++....| +|.-.+| ...+..|...+.+... ..
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~------E~~~Ghi-------~GAiniP-l~~f~~~~~~l~~~~~--~~ 173 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF------EVDVGTF-------DGALDYR-IDKFTEFPEALAAHRA--DL 173 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHH------HHccCcc-------CCCEeCC-hhHhhhhHHHHHhhhh--hc
Confidence 3456777766554321 1234699998543 3322111 2221233 2444444333333322 12
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
++++|+++|+.|. ||. .++.+|.. .|++
T Consensus 174 kdk~IvvyC~~G~-Rs~-~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCE-KAAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHH-HHHHHHHH-cCCc
Confidence 5689999999994 765 56777764 5764
No 111
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=62.61 E-value=1.5e+02 Score=34.92 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=90.9
Q ss_pred ccceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--C----CCCCcCCcccccccCCCCeEeeEEEEEecCC--
Q 006472 329 QRYYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M----RFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP-- 397 (643)
Q Consensus 329 ~~~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~----~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~-- 397 (643)
...|++++|.||.-+-|+..++. +...+|.+-.. .++ + ..|..-. ......-+=||+...+..
T Consensus 108 ~~~y~~EpKiDGlsisL~YenG~Lv~aaTRGdG~~GEDiT~NvrtI~~IP~~l~------~~p~~lEVRGEvfm~k~~F~ 181 (667)
T COG0272 108 SVEYVVEPKIDGLAISLVYENGKLVRAATRGDGTTGEDITANVRTIRSIPLKLP------GAPAVLEVRGEVFMPKEDFE 181 (667)
T ss_pred CcceEEEeecceEEEEEEEECCEEEEeeccCCCccccchhhhhhhHhhhhhhcc------CCCceEEEEeEEEEeHHHHH
Confidence 34899999999999877777654 46777864321 111 1 1121110 013445778999885421
Q ss_pred ----------C---------------------CCCcceEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccc
Q 006472 398 ----------D---------------------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNI 446 (643)
Q Consensus 398 ----------~---------------------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~v~~p~~~~~~~~ 446 (643)
. ..+.++.+++|.+-...+. ..-....+++..|.++-+.-
T Consensus 182 ~lN~~~~~~g~~~faNpRNaAAGsLRqlD~~ita~R~L~~f~y~~~~~~~~-~~~~t~~e~l~~L~~~GF~v-------- 252 (667)
T COG0272 182 ALNEEREEEGEKPFANPRNAAAGSLRQLDPKITAKRKLGFFIYAVGDGEEG-LLADTQSERLAFLKAWGFPV-------- 252 (667)
T ss_pred HHHHHHHHhCCCCcCChhhhhhhhhhccCHHHHhcCCceEEEEeCCccCCC-CCccCHHHHHHHHHHcCCCC--------
Confidence 0 0124788999998876554 44456788888888754320
Q ss_pred cccCCCCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCC------CccCCCCCeEEEecCCC
Q 006472 447 YQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARM 517 (643)
Q Consensus 447 ~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ll~~~---~~~l~h~~DGLIf~p~~sp------Y~~G~~~~llKWKP~~~ 517 (643)
+++ .+-+-.+..+-..++.| -+.+++..||+|++=.+-+ |+.+....-+=||+|-.
T Consensus 253 ----~~~-----------~~~~~~~~ev~~~~~~~~~~R~~L~y~IDGvViKvn~l~~q~~lG~tsk~PrWAiAyKFpa~ 317 (667)
T COG0272 253 ----NPY-----------TRLCKNADEVLAFYEEWEKKRASLPYDIDGVVIKVNDLALQRELGFTSKAPRWAIAYKFPAE 317 (667)
T ss_pred ----CcH-----------hhhcCCHHHHHHHHHHHHhhcccCCCccceEEEEeccHHHHHHhCCccCCCceeeeecCCch
Confidence 110 01111222222223332 2578999999999975543 44444455566776644
Q ss_pred c
Q 006472 518 N 518 (643)
Q Consensus 518 n 518 (643)
.
T Consensus 318 e 318 (667)
T COG0272 318 E 318 (667)
T ss_pred h
Confidence 3
No 112
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=60.89 E-value=20 Score=31.98 Aligned_cols=31 Identities=10% Similarity=-0.125 Sum_probs=21.8
Q ss_pred ccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 198 KHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 198 ~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
..++..|+|+|..| ++++..++.+|. ..|++
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 34678999999998 566666665554 46764
No 113
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=60.15 E-value=28 Score=30.00 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=19.4
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++..|+|+|..|. ||. .+ ++++...|+.
T Consensus 64 ~~~~~ivv~c~~g~-~s~-~~-~~~l~~~G~~ 92 (106)
T cd01519 64 SKDKELIFYCKAGV-RSK-AA-AELARSLGYE 92 (106)
T ss_pred CCCCeEEEECCCcH-HHH-HH-HHHHHHcCCc
Confidence 35679999999885 654 33 4445566764
No 114
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=59.22 E-value=47 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=19.1
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.+...|+|+|..| .||.. ++.+|. ..|.+
T Consensus 62 ~~~~~ivv~C~~G-~rs~~-aa~~L~-~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIA-AAEAAA-QAGFT 90 (117)
T ss_pred CCCCeEEEEcCCC-ccHHH-HHHHHH-HCCCC
Confidence 3567899999988 46664 444454 45653
No 115
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=56.98 E-value=1.4e+02 Score=28.58 Aligned_cols=30 Identities=7% Similarity=-0.055 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++..|+|.|..|..||.. +++++...|++
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4678999999988767765 55665667764
No 116
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=51.59 E-value=19 Score=31.09 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=21.8
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCH
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSV 231 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s~ 231 (643)
..++.|+|+|.+|. ||+ .++.+|.. .|++.
T Consensus 59 ~~~~~ivv~C~~G~-rS~-~aa~~L~~-~G~~~ 88 (110)
T COG0607 59 PDDDPIVVYCASGV-RSA-AAAAALKL-AGFTN 88 (110)
T ss_pred CCCCeEEEEeCCCC-ChH-HHHHHHHH-cCCcc
Confidence 35789999999994 774 56777765 46543
No 117
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=51.42 E-value=39 Score=36.99 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcE----EEEeeccCCCCCCCHHHHHHHHHHHHHHHHhccc
Q 006472 124 RYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIK----HVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKH 199 (643)
Q Consensus 124 ~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~----y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~ 199 (643)
+.++.++.+.++. + +. .+||+... ++|....|. -+.+|... +.+....... +. ..
T Consensus 272 ~~~~~el~~~l~~-~-~~-~lIDVR~~------~E~~~ghI~~~~gAinIPl~~---------l~~~~~~~~~-l~--~~ 330 (370)
T PRK05600 272 RTDTTSLIDATLN-G-SA-TLLDVREP------HEVLLKDLPEGGASLKLPLSA---------ITDDADILHA-LS--PI 330 (370)
T ss_pred ccCHHHHHHHHhc-C-Ce-EEEECCCH------HHhhhccCCCCCccEeCcHHH---------hhcchhhhhh-cc--cc
Confidence 4567777776643 2 23 68999843 445443332 34455422 2111000011 11 11
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
++.+|+|||..| .||. .++.+|.. .|++
T Consensus 331 ~~~~Ivv~C~sG-~RS~-~Aa~~L~~-~G~~ 358 (370)
T PRK05600 331 DGDNVVVYCASG-IRSA-DFIEKYSH-LGHE 358 (370)
T ss_pred CCCcEEEECCCC-hhHH-HHHHHHHH-cCCC
Confidence 234899999999 5776 45666654 6763
No 118
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=47.72 E-value=1e+02 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=17.1
Q ss_pred cCCCeEEEEcC-CCCChhHHHHHHHHHH
Q 006472 199 HSKKYILVHCT-HGHNRTGYMIVHFLMR 225 (643)
Q Consensus 199 ~~~~~VlVHC~-~G~~RSG~li~aYLm~ 225 (643)
.+...|+|||. .| .||+ .+|.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~-~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGP-RMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHH-HHHHHHHH
Confidence 45789999997 55 5765 45556654
No 119
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=45.16 E-value=33 Score=36.12 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHh----cccC---CCeEEEEcCCCCChhHHHH
Q 006472 181 ASVNNFVYEVTQFLSR----QKHS---KKYILVHCTHGHNRTGYMI 219 (643)
Q Consensus 181 ~~i~~f~~~v~~fi~~----~~~~---~~~VlVHC~~G~~RSG~li 219 (643)
..+.+|+..+.+++.- .... .-.|+|=||.|..||.+++
T Consensus 215 ~~~~~f~~~~~~~l~~~lp~y~~egk~~ltIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 215 PEAQEFLEKIEDLLDFLLPRYEKEGKSYLTIAIGCTGGQHRSVAIA 260 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCCCcCcHHHHH
Confidence 3445555555444432 2222 3489999999999999875
No 120
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=43.21 E-value=1.6e+02 Score=25.85 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=13.2
Q ss_pred CCCeEEEEcCCCCChhHH
Q 006472 200 SKKYILVHCTHGHNRTGY 217 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~ 217 (643)
....|+|||..|-.||..
T Consensus 65 ~~~~iv~~C~~~g~rs~~ 82 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPR 82 (113)
T ss_pred CCCEEEEECCCCCcccHH
Confidence 346899999986567654
No 121
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=43.10 E-value=33 Score=30.06 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCe
Q 006472 124 RYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203 (643)
Q Consensus 124 ~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~ 203 (643)
..++.++.+.+.. +.. ..|||+... .++... +| +|.-.+|- ..+... +..+ . ..++.+
T Consensus 11 ~i~~~~l~~~~~~-~~~-~~liDvR~~------~e~~~g-----hI--pgainip~-~~l~~~---~~~l-~--~~~~~~ 68 (109)
T cd01533 11 SVSADELAALQAR-GAP-LVVLDGRRF------DEYRKM-----TI--PGSVSCPG-AELVLR---VGEL-A--PDPRTP 68 (109)
T ss_pred cCCHHHHHHHHhc-CCC-cEEEeCCCH------HHHhcC-----cC--CCceeCCH-HHHHHH---HHhc-C--CCCCCe
Confidence 3467777765542 222 358999843 334321 22 23223443 223222 1111 1 234678
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCC
Q 006472 204 ILVHCTHGHNRTGYMIVHFLMRSQSM 229 (643)
Q Consensus 204 VlVHC~~G~~RSG~li~aYLm~~~g~ 229 (643)
|+|||..|. ||. .++..| ...|+
T Consensus 69 ivv~C~~G~-rs~-~a~~~L-~~~G~ 91 (109)
T cd01533 69 IVVNCAGRT-RSI-IGAQSL-INAGL 91 (109)
T ss_pred EEEECCCCc-hHH-HHHHHH-HHCCC
Confidence 999999995 774 345555 45676
No 122
>PF10640 Pox_ATPase-GT: mRNA capping enzyme N-terminal, ATPase and guanylyltransferase; InterPro: IPR019602 Viral mRNA capping enzymes catalyse the first two reactions in the mRNA cap formation pathway. They are a heterodimer consisting of a large and small subunit. This domain is the N terminus of the large subunit viral mRNA capping enzyme, and carries both the ATPase and the guanylyltransferase activities of the enzyme. The guanylyltransferase enzymatic region runs from residues 242 (leucine)-273(arginine) [], the core of the active site being the lysine residue at 260 []. The ATPase activity is at the very N-terminal part of the domain []. ; GO: 0004484 mRNA guanylyltransferase activity, 0004651 polynucleotide 5'-phosphatase activity
Probab=42.60 E-value=72 Score=33.66 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=45.9
Q ss_pred ccchhhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCCCCCcCCcccccccCCCCeEeeEEEEE
Q 006472 318 SLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMII 393 (643)
Q Consensus 318 slsr~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~ 393 (643)
.|-++.|..+.-.+++++-|+||+=..+.++..++|+.=-...+ ..+||... .......|=||++.
T Consensus 217 MLkkqdi~~ldl~~ly~tsKtDGv~~~V~i~~~~i~C~f~hl~y---~irY~~~~-------~i~~~i~l~gEa~K 282 (313)
T PF10640_consen 217 MLKKQDIPGLDLENLYITSKTDGVGTVVKITVKGIYCYFSHLGY---IIRYNANR-------NIDNPIVLYGEAIK 282 (313)
T ss_pred eeccccccccchhheEEEEeecCceEEEEEecCceEEEEEEeeE---EEEccccc-------CCCCceEEEeeeee
Confidence 56677888888899999999999999998988876653222221 12344322 12456778999996
No 123
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=40.10 E-value=38 Score=35.27 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHh----cccCC---CeEEEEcCCCCChhHHHH
Q 006472 181 ASVNNFVYEVTQFLSR----QKHSK---KYILVHCTHGHNRTGYMI 219 (643)
Q Consensus 181 ~~i~~f~~~v~~fi~~----~~~~~---~~VlVHC~~G~~RSG~li 219 (643)
..+.+|++.+.+|+.- ....| -.|+|=|+.|..||.+++
T Consensus 216 ~e~~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 216 PEVEEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHH
Confidence 4455666665555542 22233 489999999999999875
No 124
>PRK05569 flavodoxin; Provisional
Probab=39.05 E-value=2.5e+02 Score=25.54 Aligned_cols=113 Identities=8% Similarity=0.071 Sum_probs=60.0
Q ss_pred HHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCC
Q 006472 132 HQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHG 211 (643)
Q Consensus 132 ~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G 211 (643)
+.+++.|..+ .++++.. .+..++.+...-.+-.|+-+.+..| +.++..|++.+... ..+++.|++-|++|
T Consensus 24 ~~~~~~g~~v-~~~~~~~----~~~~~~~~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~----~~~~K~v~~f~t~g 93 (141)
T PRK05569 24 DGAKEAGAEV-TIKHVAD----AKVEDVLEADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLT----PNENKKCILFGSYG 93 (141)
T ss_pred HHHHhCCCeE-EEEECCc----CCHHHHhhCCEEEEECCCcCCCcCC-hHHHHHHHHHhhcc----CcCCCEEEEEeCCC
Confidence 3333334444 4566653 2233555556667777776543233 34566676544221 23678999999998
Q ss_pred CC-hhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHh
Q 006472 212 HN-RTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 260 (643)
Q Consensus 212 ~~-RSG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~ 260 (643)
-+ ..+.-...-++...|+++-.. +.- .+.++..-++++.++-.
T Consensus 94 ~~~~~~~~~~~~~l~~~g~~~~~~---~~~---~~~p~~~~~~~~~~~g~ 137 (141)
T PRK05569 94 WDNGEFMKLWKDRMKDYGFNVIGD---LAV---NESPNKEELNSAKELGK 137 (141)
T ss_pred CCCCcHHHHHHHHHHHCCCeEeee---EEE---ccCCCHHHHHHHHHHHH
Confidence 65 232222334445567765332 111 23466777777666544
No 125
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=37.51 E-value=49 Score=34.94 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhc----ccC---CCeEEEEcCCCCChhHHHH
Q 006472 181 ASVNNFVYEVTQFLSRQ----KHS---KKYILVHCTHGHNRTGYMI 219 (643)
Q Consensus 181 ~~i~~f~~~v~~fi~~~----~~~---~~~VlVHC~~G~~RSG~li 219 (643)
..+.+|++.+.++++.. ... .-.|+|=|+.|..||.+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 218 PEVEEFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 44566666655555422 122 3479999999999999874
No 126
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=36.53 E-value=54 Score=37.72 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=17.5
Q ss_pred CCCeEEEEcCCCCChhHHHHH
Q 006472 200 SKKYILVHCTHGHNRTGYMIV 220 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~ 220 (643)
.+-.|+|||.-|..||.-++.
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred CCCeEEEEccCCcchhHHHHH
Confidence 568999999999999975543
No 127
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=35.88 E-value=99 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=19.1
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++..|+|+|..|. ||+. + ++++...|..
T Consensus 76 ~~~~~iv~yc~~g~-~s~~-~-~~~l~~~G~~ 104 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACV-L-LLALELLGYK 104 (118)
T ss_pred CCCCCEEEECCcHH-HHHH-H-HHHHHHcCCC
Confidence 35779999999874 6654 3 4444556763
No 128
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=35.66 E-value=2.2e+02 Score=30.34 Aligned_cols=104 Identities=22% Similarity=0.177 Sum_probs=61.7
Q ss_pred CceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHH
Q 006472 102 GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNA 181 (643)
Q Consensus 102 ~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~ 181 (643)
..|++|..|- ..+..-..+.-..|.++-+.+.. .=..|||..|.-++ + |-+ +.| ...|..+
T Consensus 94 kEIV~lg~~d--dv~p~~~vG~yl~p~~wn~~l~D---~~~vviDtRN~YE~-~--------iG~----F~g-Av~p~~~ 154 (308)
T COG1054 94 KEIVALGVED--DVDPLENVGTYLSPKDWNELLSD---PDVVVIDTRNDYEV-A--------IGH----FEG-AVEPDIE 154 (308)
T ss_pred hhheecCCCC--CcCccccccCccCHHHHHHHhcC---CCeEEEEcCcceeE-e--------eee----ecC-ccCCChh
Confidence 3556666652 11111112333467777766643 23779999864211 1 222 223 2467778
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCC
Q 006472 182 SVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSM 229 (643)
Q Consensus 182 ~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~ 229 (643)
...+|...+.+..+ ...+++|+..||.|+ |.- -..+||.. .|+
T Consensus 155 tFrefP~~v~~~~~--~~~~KkVvmyCTGGI-RCE-Kas~~m~~-~GF 197 (308)
T COG1054 155 TFREFPAWVEENLD--LLKDKKVVMYCTGGI-RCE-KASAWMKE-NGF 197 (308)
T ss_pred hhhhhHHHHHHHHH--hccCCcEEEEcCCce-eeh-hhHHHHHH-hcc
Confidence 88888888887766 446679999999998 653 45566654 455
No 129
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=33.06 E-value=42 Score=28.45 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCChhHHHHHHHH
Q 006472 202 KYILVHCTHGHNRTGYMIVHFL 223 (643)
Q Consensus 202 ~~VlVHC~~G~~RSG~li~aYL 223 (643)
+.|+|.|..|+| |++|++.=+
T Consensus 1 ~kilvvCg~G~g-tS~ml~~ki 21 (87)
T cd05567 1 KKIVFACDAGMG-SSAMGASVL 21 (87)
T ss_pred CEEEEECCCCcc-HHHHHHHHH
Confidence 368999999998 555544433
No 130
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.79 E-value=3.2e+02 Score=29.41 Aligned_cols=67 Identities=18% Similarity=0.388 Sum_probs=47.0
Q ss_pred CcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhc------------ccCCCeEEEEc-CCCCChhHHHHHHHHHHhcCC
Q 006472 163 GIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQ------------KHSKKYILVHC-THGHNRTGYMIVHFLMRSQSM 229 (643)
Q Consensus 163 gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~------------~~~~~~VlVHC-~~G~~RSG~li~aYLm~~~g~ 229 (643)
.++--.+.+ |+..+|.++++..-++...+|+... ...-+.|+||= +-|-|||.-+..-.++.+-|+
T Consensus 318 rfRttQVyV-G~hiPp~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraGy 396 (472)
T KOG3824|consen 318 RFRTTQVYV-GRHIPPSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAGY 396 (472)
T ss_pred ceeeeeEEe-cCCCCCChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcCC
Confidence 355555555 4447888888887777777777632 12346889997 579999999888777766666
Q ss_pred C
Q 006472 230 S 230 (643)
Q Consensus 230 s 230 (643)
.
T Consensus 397 P 397 (472)
T KOG3824|consen 397 P 397 (472)
T ss_pred C
Confidence 3
No 131
>PRK07411 hypothetical protein; Validated
Probab=30.61 E-value=1.2e+02 Score=33.37 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
++..|+|||..|. ||.. ++.+| ...|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGIL-KEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHH-HHcCCC
Confidence 4678999998885 7754 44545 457875
No 132
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=29.15 E-value=2.6e+02 Score=25.17 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCCeeEEEEcCCCCC----CCCc----chhccCCcEEEEeeccC
Q 006472 127 FKQVIHQLRVLGRKLGLVIDLTNTTR----YYPT----SDLKKEGIKHVKIQCKG 173 (643)
Q Consensus 127 ~~~l~~~~~~~~~~I~~VIdLt~~~~----~y~~----~~~~~~gI~y~~ip~~d 173 (643)
.+.+++.++. .+|..|||+..-.+ .++. ..+...||.|++++--+
T Consensus 2 ~e~f~~~l~~--~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 2 IERFYDLLKK--NGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHHHHH--CCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 3456665543 67999999764433 4444 34567899999998754
No 133
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=25.89 E-value=2.5e+02 Score=31.93 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=100.0
Q ss_pred ccccCCCCCCCCCccCCCCCCc-cc-CceeecCCCCccccccCCCCCCCCCHHHHHHHH---HHcCCCeeEEEEcCCCCC
Q 006472 78 YKSYDRNKLPPGWLDCPPFGQE-IG-GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQL---RVLGRKLGLVIDLTNTTR 152 (643)
Q Consensus 78 ~~~~~~~~~p~~W~~~~~~g~~-I~-~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~---~~~~~~I~~VIdLt~~~~ 152 (643)
.-|++.-+||++-.--+-+|.. |+ +|++....+ ..+..+..+..|.-..+...+ ...+ ..-+|+-|....-
T Consensus 46 ~aSG~~VGLP~GQmGNSEVGHlnIGAGRivyq~l~---rI~~aie~g~f~~n~~l~~~~~~v~~~~-~~lHlmGl~S~GG 121 (509)
T COG0696 46 KASGLAVGLPEGQMGNSEVGHLNIGAGRIVYQDLT---RIDKAIEDGSFFENPALLNAIDEVKANG-SALHLMGLVSDGG 121 (509)
T ss_pred hccccccCCCCCcccCccccceeeecceEeecccc---hhhhhhhcCcccccHHHHHHHHHhhhcC-ceEEEEecccCCc
Confidence 3478888999998877788866 75 688887743 334444444444434443333 2222 2335666654432
Q ss_pred CCC--------cchhccCC--cEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHH
Q 006472 153 YYP--------TSDLKKEG--IKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHF 222 (643)
Q Consensus 153 ~y~--------~~~~~~~g--I~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aY 222 (643)
..+ -+...+.| .-|++.-..|++.+|. ...++++.+..++. ..|.+|.+++...|
T Consensus 122 VHSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~--s~~~~le~l~~~~~-------------~~g~~~iasi~GRY 186 (509)
T COG0696 122 VHSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPR--SALQYLEELEAKAK-------------EYGNGRIASISGRY 186 (509)
T ss_pred ccchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCch--hHHHHHHHHHHHhh-------------ccCceEEEEEeeee
Confidence 221 12334455 4677887888755554 46667777777654 23445555555555
Q ss_pred H-HHh-cCCC-HHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCCCCCCCC
Q 006472 223 L-MRS-QSMS-VAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCP 270 (643)
Q Consensus 223 L-m~~-~g~s-~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~~~~~p 270 (643)
. |.+ ..|. .+.|...+....... ......+.+...|..-......-|
T Consensus 187 YaMDRD~rWdRve~Ay~a~~~~~~~~-~~~~~~~~~~~~Y~~~~tDEFv~p 236 (509)
T COG0696 187 YAMDRDNRWDRVEKAYDALTYGEGEF-TANSAVEAVQASYARGITDEFVKP 236 (509)
T ss_pred eccccccchHHHHHHHHHHHcccccc-ccCCHHHHHHHHHhcCCCcccccc
Confidence 4 332 3476 888998888777532 234566777777776554443333
No 134
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=25.69 E-value=80 Score=26.77 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=19.6
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++..|+|+|..| +||+. ++.+| ...|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 4567899999877 57755 44555 456763
No 135
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=25.56 E-value=78 Score=26.87 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=19.1
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.++.+|+|+|..| +|+. .++ .++...|+.
T Consensus 59 ~~~~~ivv~c~~g-~~s~-~~~-~~l~~~G~~ 87 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA-LAG-KTLQDMGLK 87 (103)
T ss_pred CCCCeEEEEcCCC-CcHH-HHH-HHHHHcChH
Confidence 4568999999887 5764 344 444556653
No 136
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.56 E-value=1.7e+02 Score=31.58 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCH----------------HHHHHHHHHHHH
Q 006472 129 QVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDN----------------ASVNNFVYEVTQ 192 (643)
Q Consensus 129 ~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~----------------~~i~~f~~~v~~ 192 (643)
+|.+++++.| |+-++.....-+.+.++..|+..++|+--.-...|-. ..+.+ ++.+.+
T Consensus 94 ~Lke~a~~~G-----i~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~e-i~~av~ 167 (347)
T COG2089 94 QLKEYARKRG-----IIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEE-IEEAVA 167 (347)
T ss_pred HHHHHHHHcC-----eEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHH-HHHHHH
Confidence 4666665544 4444421111134566777888888775332112211 11111 233445
Q ss_pred HHHhcccCCCeEEEEcCCCCChhH
Q 006472 193 FLSRQKHSKKYILVHCTHGHNRTG 216 (643)
Q Consensus 193 fi~~~~~~~~~VlVHC~~G~~RSG 216 (643)
+++++.. ...++.||+.++--+-
T Consensus 168 ~~r~~g~-~~i~LLhC~s~YPap~ 190 (347)
T COG2089 168 ILRENGN-PDIALLHCTSAYPAPF 190 (347)
T ss_pred HHHhcCC-CCeEEEEecCCCCCCH
Confidence 5554332 3579999999876443
No 137
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.50 E-value=89 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=21.7
Q ss_pred ccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 198 KHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 198 ~~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
..++..|+|.|.+|-.||. .++++++..|++
T Consensus 83 i~~~~~vvvyC~~~G~rs~--~a~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQ--SLAWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHH--HHHHHHHHcCCc
Confidence 3467899999986545766 344777777874
No 138
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=25.40 E-value=1.2e+02 Score=28.39 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCc-EEEEeeccC---CCCCCCHHHHHHHHHHHHHHHHhcc
Q 006472 123 KRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGI-KHVKIQCKG---RDAVPDNASVNNFVYEVTQFLSRQK 198 (643)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI-~y~~ip~~d---~~~~P~~~~i~~f~~~v~~fi~~~~ 198 (643)
..++.+++-+.+. ..=...||+.. |++|+.-++ .-+.||..- .+..+.+ +|.+.+ .+.. .
T Consensus 23 ~sv~~~qvk~L~~---~~~~~llDVRe------peEfk~gh~~~siNiPy~~~~~~~~l~~~----eF~kqv-g~~k--p 86 (136)
T KOG1530|consen 23 QSVSVEQVKNLLQ---HPDVVLLDVRE------PEEFKQGHIPASINIPYMSRPGAGALKNP----EFLKQV-GSSK--P 86 (136)
T ss_pred EEEEHHHHHHHhc---CCCEEEEeecC------HHHhhccCCcceEeccccccccccccCCH----HHHHHh-cccC--C
Confidence 3455555544432 22267888874 445554443 344555421 1123333 233333 2222 2
Q ss_pred cCCCeEEEEcCCCCChhHH
Q 006472 199 HSKKYILVHCTHGHNRTGY 217 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~ 217 (643)
.....|.|||..|. ||..
T Consensus 87 ~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 87 PHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred CCCCcEEEEeccCc-chhH
Confidence 34458999999995 7754
No 139
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=24.97 E-value=93 Score=26.35 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
++..|+|+|..|. ||. .++.+| ...|++
T Consensus 55 ~~~~iv~~c~~G~-rs~-~aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RAD-MTASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHH-HHHHHH-HHcCCE
Confidence 4678999999984 665 445555 556764
No 140
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.70 E-value=1e+02 Score=27.56 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=19.6
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCC
Q 006472 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSM 229 (643)
Q Consensus 199 ~~~~~VlVHC~~G~~RSG~li~aYLm~~~g~ 229 (643)
..+..|+|+|..| .||. .++.+| ...|+
T Consensus 70 ~~~~~ivv~C~~G-~rs~-~aa~~L-~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRG-NDSQ-TAVRKL-KELGL 97 (122)
T ss_pred CCCCcEEEECCCC-CcHH-HHHHHH-HHcCC
Confidence 4568999999999 4765 455555 44677
No 141
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.56 E-value=77 Score=32.97 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCCHHHHHHH
Q 006472 209 THGHNRTGYMIVHFLMRSQSMSVAQAIKK 237 (643)
Q Consensus 209 ~~G~~RSG~li~aYLm~~~g~s~~eAi~~ 237 (643)
--|+||||.-+++-|+ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 4599999999999887 59999999754
No 142
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=22.07 E-value=1.7e+02 Score=32.54 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEeeeecccccccCCCCCCCCCccCCCCCCccc----------
Q 006472 32 RIESGAEILRREREERRRRLKRDRPDDRPVHAYQPAMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIG---------- 101 (643)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~~~~g~~I~---------- 101 (643)
...++..-+.+.-=||.|+||.-.+. -.-|++.|-+ +...|+ +|+ ++.+.
T Consensus 52 TFDaciRfLnEDPWeRLr~lk~~~~n----T~LQMLlRGQ--NlvGYr------------hya--DDvVe~Fv~ka~~nG 111 (472)
T COG5016 52 TFDACIRFLNEDPWERLRELKKAVPN----TKLQMLLRGQ--NLVGYR------------HYA--DDVVEKFVEKAAENG 111 (472)
T ss_pred cHHHHHHHhcCCHHHHHHHHHHhCCC----cHHHHHHccC--cccccc------------CCc--hHHHHHHHHHHHhcC
Confidence 34455666666677888888876433 3356776666 333332 221 12220
Q ss_pred -CceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCeeEEEEcCCCC----CCC--CcchhccCCcEEEEeeccCC
Q 006472 102 -GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTT----RYY--PTSDLKKEGIKHVKIQCKGR 174 (643)
Q Consensus 102 -~~flp~k~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~----~~y--~~~~~~~~gI~y~~ip~~d~ 174 (643)
+-|-.|-. |++. =+.+..++..++.|..+..+|+-|-+- .+| -.+++.+.|+..+.| .|.
T Consensus 112 idvfRiFDA-lND~----------RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIci--KDm 178 (472)
T COG5016 112 IDVFRIFDA-LNDV----------RNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICI--KDM 178 (472)
T ss_pred CcEEEechh-ccch----------hHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEe--ecc
Confidence 22333333 2221 124556677777888888888777321 223 135667788866654 444
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHH
Q 006472 175 DAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMR 225 (643)
Q Consensus 175 ~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RSG~li~aYLm~ 225 (643)
...-++....+.+.. |. +.-+-+|.|||++- ||.-.+|||..
T Consensus 179 aGlltP~~ayelVk~----iK--~~~~~pv~lHtH~T---sG~a~m~ylkA 220 (472)
T COG5016 179 AGLLTPYEAYELVKA----IK--KELPVPVELHTHAT---SGMAEMTYLKA 220 (472)
T ss_pred cccCChHHHHHHHHH----HH--HhcCCeeEEecccc---cchHHHHHHHH
Confidence 344555444444433 33 22347899998764 45667777764
No 143
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=21.15 E-value=4.4e+02 Score=29.37 Aligned_cols=95 Identities=12% Similarity=0.306 Sum_probs=54.3
Q ss_pred CHHHHHHHHHH-cCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHH-----------HHHHHH
Q 006472 126 SFKQVIHQLRV-LGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFV-----------YEVTQF 193 (643)
Q Consensus 126 ~~~~l~~~~~~-~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~-----------~~v~~f 193 (643)
+++.=+++++. ...+--+|.||+.-. +-..++..=++...+|+ |.+|--+.+.+.. +.+.+-
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLStgg---dl~~iR~~il~~s~vpv---GTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLSTGG---DLDEIRRAIIEASPVPV---GTVPIYQAAVEAARKYGSVVDMTEDDLFDV 148 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccCCC---CHHHHHHHHHHcCCCCC---cChhHHHHHHHHHhcCCChhhCCHHHHHHH
Confidence 44544554443 346788999998432 33344444444455555 4567544443331 122233
Q ss_pred HHhcccCC-CeEEEEcC----------------CCCChhHHHHHHHHHHh
Q 006472 194 LSRQKHSK-KYILVHCT----------------HGHNRTGYMIVHFLMRS 226 (643)
Q Consensus 194 i~~~~~~~-~~VlVHC~----------------~G~~RSG~li~aYLm~~ 226 (643)
|+++...| .-+-|||. .=+||-|.++++|++..
T Consensus 149 ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n 198 (431)
T PRK13352 149 IEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHN 198 (431)
T ss_pred HHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHc
Confidence 33333334 58999995 23589999999999975
No 144
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=21.05 E-value=1.5e+02 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
++.+|+|+|..|...++..++..| ...|.+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCcc
Confidence 467899999998543344555444 445653
No 145
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=20.60 E-value=1.3e+02 Score=25.60 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHcCCCeeEEEEcCCCCCCCCcchhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEE
Q 006472 126 SFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYIL 205 (643)
Q Consensus 126 ~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~Vl 205 (643)
++.++.+.++....+ -.|||+... +++... +|| |.-.+|- ..+..++.. +... .++.+|+
T Consensus 3 ~~~~l~~~~~~~~~~-~~iiDvR~~------~e~~~~-----hI~--ga~~ip~-~~~~~~~~~----~~~~-~~~~~vv 62 (101)
T cd01528 3 SVAELAEWLADEREE-PVLIDVREP------EELEIA-----FLP--GFLHLPM-SEIPERSKE----LDSD-NPDKDIV 62 (101)
T ss_pred CHHHHHHHHhcCCCC-CEEEECCCH------HHHhcC-----cCC--CCEecCH-HHHHHHHHH----hccc-CCCCeEE
Confidence 466777666432112 359999843 333321 222 3223443 233333322 2211 3467999
Q ss_pred EEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 206 VHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 206 VHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
|+|..| .||. .++.+|.+ .|++
T Consensus 63 ~~c~~g-~rs~-~~~~~l~~-~G~~ 84 (101)
T cd01528 63 VLCHHG-GRSM-QVAQWLLR-QGFE 84 (101)
T ss_pred EEeCCC-chHH-HHHHHHHH-cCCc
Confidence 999998 5764 44555554 6764
No 146
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.52 E-value=1.3e+02 Score=25.80 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 201 KKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 201 ~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
+..|+|+|..|. ||+.+ +. .+...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~-a~-~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF-AA-FLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHH-HH-HHHHcCCC
Confidence 578999999985 66543 33 34456763
No 147
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=20.24 E-value=1.6e+02 Score=30.88 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.3
Q ss_pred chhccCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcC
Q 006472 157 SDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCT 209 (643)
Q Consensus 157 ~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~ 209 (643)
..|++.|+.|+ =|++|| +.+.+.+.+ +..++-.++|+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGH----dl~~Li~~l-------~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGH----DLEELIEVL-------ENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT-----HHHHHHHH-------HHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCC----CHHHHHHHH-------HHHhcCCCCEEEEEe
Confidence 67899999999 588887 333343333 333566899999973
No 148
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=20.23 E-value=5.6e+02 Score=21.99 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006472 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (643)
Q Consensus 200 ~~~~VlVHC~~G~~RSG~li~aYLm~~~g~s 230 (643)
.+..|+|+|..|. ||. .++..| ...|++
T Consensus 57 ~~~~ivv~c~~g~-~s~-~a~~~L-~~~G~~ 84 (108)
T PRK00162 57 FDTPVMVMCYHGN-SSQ-GAAQYL-LQQGFD 84 (108)
T ss_pred CCCCEEEEeCCCC-CHH-HHHHHH-HHCCch
Confidence 5678999999885 553 444444 445664
Done!