Query 006473
Match_columns 643
No_of_seqs 411 out of 2812
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 23:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1230 Protein containing rep 100.0 1.6E-81 3.4E-86 636.2 32.3 477 1-511 1-493 (521)
2 PLN02153 epithiospecifier prot 100.0 1.3E-42 2.7E-47 370.8 34.8 280 52-348 7-293 (341)
3 PLN02193 nitrile-specifier pro 100.0 3.7E-42 8E-47 381.2 35.8 259 61-348 158-419 (470)
4 KOG1230 Protein containing rep 100.0 1.2E-41 2.7E-46 345.9 24.3 272 119-501 61-349 (521)
5 KOG4693 Uncharacterized conser 100.0 7.3E-40 1.6E-44 316.3 22.4 263 67-350 12-287 (392)
6 PLN02193 nitrile-specifier pro 100.0 5.5E-38 1.2E-42 347.9 35.2 299 65-501 106-419 (470)
7 KOG4441 Proteins containing BT 100.0 5.1E-38 1.1E-42 352.9 28.8 284 65-501 272-555 (571)
8 PLN02153 epithiospecifier prot 100.0 7.9E-37 1.7E-41 326.1 31.7 281 108-501 4-293 (341)
9 TIGR03548 mutarot_permut cycli 100.0 1.2E-36 2.7E-41 322.2 30.5 249 67-348 2-288 (323)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 2E-36 4.4E-41 323.6 29.6 257 63-348 2-307 (346)
11 PHA02713 hypothetical protein; 100.0 1.9E-36 4.1E-41 341.3 28.8 265 101-503 272-544 (557)
12 PRK14131 N-acetylneuraminic ac 100.0 1.8E-35 3.9E-40 319.5 31.3 310 55-497 15-373 (376)
13 PHA02713 hypothetical protein; 100.0 3.6E-35 7.9E-40 331.0 26.0 245 59-349 284-543 (557)
14 KOG4441 Proteins containing BT 100.0 4.1E-35 9E-40 329.5 25.9 242 60-348 314-555 (571)
15 KOG4152 Host cell transcriptio 100.0 1.9E-35 4E-40 306.4 21.0 320 53-494 18-366 (830)
16 KOG4693 Uncharacterized conser 100.0 8.5E-35 1.8E-39 281.2 18.4 273 112-502 3-286 (392)
17 KOG0379 Kelch repeat-containin 100.0 8.3E-34 1.8E-38 314.1 27.8 256 61-348 53-310 (482)
18 PHA03098 kelch-like protein; P 100.0 1.2E-33 2.7E-38 319.3 27.3 260 100-503 263-522 (534)
19 KOG0379 Kelch repeat-containin 100.0 2.2E-33 4.8E-38 310.7 25.7 258 118-503 54-312 (482)
20 PHA03098 kelch-like protein; P 100.0 1.5E-32 3.4E-37 310.4 28.8 238 69-350 285-522 (534)
21 TIGR03548 mutarot_permut cycli 100.0 1.8E-30 3.9E-35 275.1 26.1 237 58-318 52-315 (323)
22 PHA02790 Kelch-like protein; P 100.0 3.1E-30 6.7E-35 286.8 27.3 208 81-347 271-478 (480)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 1.3E-29 2.8E-34 271.2 27.9 258 61-338 45-345 (346)
24 PRK14131 N-acetylneuraminic ac 100.0 2.3E-29 5E-34 272.0 28.0 263 61-345 66-374 (376)
25 PHA02790 Kelch-like protein; P 100.0 1.5E-29 3.2E-34 281.3 25.8 211 130-499 267-477 (480)
26 KOG4152 Host cell transcriptio 100.0 6.8E-30 1.5E-34 265.2 18.3 216 111-348 17-247 (830)
27 KOG2437 Muskelin [Signal trans 99.8 8.6E-22 1.9E-26 205.1 3.5 264 64-348 256-543 (723)
28 COG3055 Uncharacterized protei 99.8 2.5E-17 5.4E-22 167.3 21.4 258 61-348 29-335 (381)
29 PF13422 DUF4110: Domain of un 99.8 2.7E-19 5.9E-24 151.5 3.8 53 588-640 2-56 (96)
30 COG3055 Uncharacterized protei 99.6 1.2E-14 2.5E-19 148.0 19.2 255 65-340 79-375 (381)
31 KOG2437 Muskelin [Signal trans 99.6 3.8E-16 8.2E-21 163.3 7.0 167 165-348 238-421 (723)
32 PF13964 Kelch_6: Kelch motif 99.0 1E-09 2.2E-14 82.9 6.1 50 124-180 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 98.9 1.3E-09 2.7E-14 82.4 5.5 50 179-236 1-50 (50)
34 PF13415 Kelch_3: Galactose ox 98.8 9.8E-09 2.1E-13 77.1 6.5 49 134-188 1-49 (49)
35 PF13415 Kelch_3: Galactose ox 98.8 1.4E-08 3E-13 76.3 6.4 49 81-133 1-49 (49)
36 PF03089 RAG2: Recombination a 98.8 8.5E-07 1.8E-11 88.4 19.4 187 61-257 15-231 (337)
37 PF01344 Kelch_1: Kelch motif; 98.7 3.2E-08 7E-13 73.5 6.2 46 179-227 1-46 (47)
38 PF07646 Kelch_2: Kelch motif; 98.7 3.5E-08 7.7E-13 74.1 5.7 48 179-227 1-48 (49)
39 PLN02772 guanylate kinase 98.7 1E-07 2.2E-12 101.4 11.0 88 233-341 22-110 (398)
40 PLN02772 guanylate kinase 98.7 9.3E-08 2E-12 101.7 10.4 88 177-282 22-110 (398)
41 PF13854 Kelch_5: Kelch motif 98.7 1.6E-08 3.4E-13 73.3 3.1 41 450-492 1-41 (42)
42 PF13418 Kelch_4: Galactose ox 98.7 4.5E-08 9.6E-13 73.5 5.5 46 179-227 1-47 (49)
43 PF13418 Kelch_4: Galactose ox 98.6 7.7E-08 1.7E-12 72.2 5.5 46 68-118 1-46 (49)
44 PF01344 Kelch_1: Kelch motif; 98.6 7.7E-08 1.7E-12 71.4 5.5 45 124-173 1-45 (47)
45 PF07646 Kelch_2: Kelch motif; 98.5 1.7E-07 3.6E-12 70.4 6.1 47 235-290 1-48 (49)
46 PF13854 Kelch_5: Kelch motif 98.5 1.9E-07 4E-12 67.7 5.3 41 177-219 2-42 (42)
47 PF03089 RAG2: Recombination a 98.4 3.5E-06 7.7E-11 84.0 13.7 129 121-257 19-176 (337)
48 TIGR01640 F_box_assoc_1 F-box 98.2 0.00025 5.5E-09 71.3 22.5 204 101-341 14-230 (230)
49 smart00612 Kelch Kelch domain. 98.2 2.9E-06 6.2E-11 62.4 4.8 47 136-190 1-47 (47)
50 smart00612 Kelch Kelch domain. 98.2 3.4E-06 7.4E-11 62.0 5.0 47 247-307 1-47 (47)
51 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00055 1.2E-08 69.1 16.3 151 102-290 47-208 (243)
52 PF07250 Glyoxal_oxid_N: Glyox 97.6 0.0016 3.4E-08 65.8 15.3 151 155-349 45-208 (243)
53 PRK11138 outer membrane biogen 97.5 0.049 1.1E-06 59.4 25.6 187 81-344 120-319 (394)
54 PRK11138 outer membrane biogen 97.5 0.029 6.2E-07 61.3 23.7 193 81-345 69-282 (394)
55 PF13360 PQQ_2: PQQ-like domai 97.4 0.16 3.5E-06 50.6 26.8 188 81-344 36-237 (238)
56 TIGR03300 assembly_YfgL outer 97.0 0.32 7E-06 52.5 25.8 170 101-341 155-340 (377)
57 PF13360 PQQ_2: PQQ-like domai 96.9 0.32 7E-06 48.4 22.5 177 101-346 3-200 (238)
58 TIGR03300 assembly_YfgL outer 96.9 0.32 6.9E-06 52.6 24.0 188 81-345 65-267 (377)
59 TIGR01640 F_box_assoc_1 F-box 96.8 0.1 2.2E-06 52.4 18.6 164 156-348 14-186 (230)
60 PF08450 SGL: SMP-30/Gluconola 96.5 0.74 1.6E-05 46.5 22.6 200 81-347 11-221 (246)
61 KOG2055 WD40 repeat protein [G 96.5 0.14 3.1E-06 54.9 17.1 194 63-314 208-406 (514)
62 PF12768 Rax2: Cortical protei 96.2 0.43 9.4E-06 49.4 18.7 125 139-289 2-130 (281)
63 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 5.9 0.00013 45.1 27.2 218 81-342 69-336 (527)
64 KOG2055 WD40 repeat protein [G 95.5 0.23 4.9E-06 53.4 13.1 150 134-341 224-376 (514)
65 PF07893 DUF1668: Protein of u 95.4 0.41 8.9E-06 51.2 15.4 127 133-289 75-216 (342)
66 PRK04792 tolB translocation pr 95.3 1.9 4E-05 48.1 20.8 149 156-347 242-390 (448)
67 PRK05137 tolB translocation pr 95.2 4.9 0.00011 44.4 23.4 194 101-347 226-420 (435)
68 cd00094 HX Hemopexin-like repe 95.1 1.5 3.2E-05 42.9 17.1 149 81-283 16-178 (194)
69 TIGR03866 PQQ_ABC_repeats PQQ- 95.1 3.9 8.5E-05 41.5 21.2 101 83-220 2-106 (300)
70 PRK04792 tolB translocation pr 94.8 2.7 5.9E-05 46.8 20.0 147 101-289 242-391 (448)
71 cd00094 HX Hemopexin-like repe 94.7 2.6 5.6E-05 41.2 17.4 153 129-342 11-178 (194)
72 PF07893 DUF1668: Protein of u 94.6 0.94 2E-05 48.5 15.2 125 188-348 75-216 (342)
73 PRK13684 Ycf48-like protein; P 94.5 7.9 0.00017 41.3 22.2 156 110-315 118-279 (334)
74 cd00216 PQQ_DH Dehydrogenases 94.4 11 0.00023 42.5 25.2 122 81-225 61-193 (488)
75 PRK05137 tolB translocation pr 94.4 4.5 9.8E-05 44.7 20.7 148 156-347 226-374 (435)
76 TIGR02800 propeller_TolB tol-p 94.4 6.3 0.00014 42.9 21.7 148 101-289 214-363 (417)
77 PRK04922 tolB translocation pr 94.3 6 0.00013 43.7 21.4 185 101-341 228-413 (433)
78 PRK00178 tolB translocation pr 94.3 5.3 0.00011 43.9 20.9 146 156-348 223-372 (430)
79 PRK04922 tolB translocation pr 94.2 4.4 9.5E-05 44.8 20.2 145 156-347 228-376 (433)
80 PRK00178 tolB translocation pr 94.2 8.9 0.00019 42.2 22.4 183 101-341 223-408 (430)
81 PRK03629 tolB translocation pr 94.1 7 0.00015 43.2 21.4 149 156-348 223-372 (429)
82 PRK11028 6-phosphogluconolacto 94.1 8.6 0.00019 40.5 21.4 94 101-218 57-157 (330)
83 TIGR02800 propeller_TolB tol-p 94.0 5.1 0.00011 43.7 19.9 146 156-347 214-362 (417)
84 PRK02889 tolB translocation pr 93.5 8.2 0.00018 42.6 20.5 145 156-347 220-368 (427)
85 PF12768 Rax2: Cortical protei 93.3 0.95 2.1E-05 46.9 11.8 112 208-348 15-130 (281)
86 cd00200 WD40 WD40 domain, foun 93.2 8.9 0.00019 37.5 21.5 70 73-167 56-126 (289)
87 PRK03629 tolB translocation pr 92.9 18 0.00038 40.0 24.0 185 101-342 223-409 (429)
88 cd00200 WD40 WD40 domain, foun 92.8 10 0.00022 37.1 21.5 105 81-220 20-126 (289)
89 PRK04043 tolB translocation pr 92.4 18 0.0004 39.8 21.0 195 101-348 213-409 (419)
90 PRK13684 Ycf48-like protein; P 91.8 19 0.00042 38.3 19.8 185 68-314 45-233 (334)
91 PF05096 Glu_cyclase_2: Glutam 91.4 5.5 0.00012 40.7 14.2 110 184-341 49-159 (264)
92 PF03178 CPSF_A: CPSF A subuni 91.3 7.1 0.00015 41.1 15.9 143 82-254 42-192 (321)
93 TIGR03866 PQQ_ABC_repeats PQQ- 91.3 18 0.00039 36.5 22.4 111 73-220 35-148 (300)
94 PF05096 Glu_cyclase_2: Glutam 91.2 3.9 8.4E-05 41.9 12.8 150 133-342 54-206 (264)
95 PF03178 CPSF_A: CPSF A subuni 91.0 9.8 0.00021 40.1 16.6 141 135-314 42-190 (321)
96 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.9 18 0.00039 41.2 19.5 182 130-347 65-289 (527)
97 PRK11028 6-phosphogluconolacto 90.7 24 0.00052 37.1 22.3 10 156-165 148-157 (330)
98 PF08450 SGL: SMP-30/Gluconola 90.7 20 0.00043 36.0 19.2 163 81-289 51-222 (246)
99 PF10446 DUF2457: Protein of u 90.1 0.068 1.5E-06 57.2 -0.8 8 480-487 26-33 (458)
100 PRK04043 tolB translocation pr 90.0 33 0.00071 37.9 20.0 153 156-348 213-366 (419)
101 PF02897 Peptidase_S9_N: Proly 89.8 34 0.00074 37.3 22.3 148 156-348 252-413 (414)
102 PF02191 OLF: Olfactomedin-lik 89.2 24 0.00052 36.0 16.9 191 81-313 30-237 (250)
103 KOG0310 Conserved WD40 repeat- 88.9 41 0.00088 37.0 18.9 174 81-317 122-301 (487)
104 PLN00181 protein SPA1-RELATED; 88.4 41 0.00089 40.3 20.9 131 156-340 555-691 (793)
105 PF14583 Pectate_lyase22: Olig 88.3 25 0.00055 38.0 16.8 209 81-341 46-274 (386)
106 PF02191 OLF: Olfactomedin-lik 88.2 12 0.00025 38.3 13.8 172 134-348 30-212 (250)
107 PLN02919 haloacid dehalogenase 87.9 81 0.0017 39.2 26.2 159 134-342 694-891 (1057)
108 cd00216 PQQ_DH Dehydrogenases 87.7 33 0.00072 38.6 18.5 126 130-287 57-192 (488)
109 PRK01742 tolB translocation pr 87.1 51 0.0011 36.3 19.3 139 156-347 228-369 (429)
110 PF02897 Peptidase_S9_N: Proly 86.7 52 0.0011 35.8 21.3 148 100-288 251-412 (414)
111 PF10282 Lactonase: Lactonase, 86.2 32 0.00069 36.7 16.6 173 69-289 144-333 (345)
112 TIGR03074 PQQ_membr_DH membran 85.5 89 0.0019 37.3 26.5 61 268-342 410-480 (764)
113 PTZ00421 coronin; Provisional 85.2 72 0.0016 36.0 22.5 62 135-220 138-201 (493)
114 KOG0649 WD40 repeat protein [G 84.9 31 0.00067 34.8 14.0 81 65-171 112-193 (325)
115 PF08268 FBA_3: F-box associat 84.5 22 0.00047 32.0 12.3 87 186-289 2-89 (129)
116 PF09910 DUF2139: Uncharacteri 84.3 56 0.0012 34.0 19.2 104 99-221 76-185 (339)
117 KOG0310 Conserved WD40 repeat- 84.2 70 0.0015 35.2 17.4 138 81-255 79-218 (487)
118 PLN00181 protein SPA1-RELATED; 84.1 81 0.0017 37.8 20.4 60 134-219 587-650 (793)
119 PLN00033 photosystem II stabil 84.0 71 0.0015 35.0 25.7 122 70-225 89-215 (398)
120 PF06524 NOA36: NOA36 protein; 83.6 0.77 1.7E-05 45.8 2.4 18 181-198 124-141 (314)
121 COG4257 Vgb Streptogramin lyas 83.5 58 0.0013 33.6 17.5 191 102-353 125-319 (353)
122 PRK02889 tolB translocation pr 83.2 78 0.0017 34.8 22.0 182 101-340 220-404 (427)
123 PLN00033 photosystem II stabil 82.7 80 0.0017 34.6 23.3 68 81-171 146-214 (398)
124 PF08268 FBA_3: F-box associat 82.0 27 0.00059 31.4 11.9 85 132-226 3-89 (129)
125 COG4257 Vgb Streptogramin lyas 81.7 40 0.00087 34.7 13.6 138 105-288 172-313 (353)
126 PF14870 PSII_BNR: Photosynthe 81.5 75 0.0016 33.4 18.8 193 81-348 71-270 (302)
127 PTZ00421 coronin; Provisional 81.3 1E+02 0.0022 34.8 19.9 53 101-167 148-201 (493)
128 COG4946 Uncharacterized protei 81.0 94 0.002 34.3 17.0 173 155-352 106-308 (668)
129 KOG4378 Nuclear protein COP1 [ 80.2 31 0.00067 38.1 12.9 52 210-284 188-243 (673)
130 KOG2321 WD40 repeat protein [G 78.8 40 0.00087 37.9 13.5 74 123-219 132-207 (703)
131 smart00284 OLF Olfactomedin-li 78.8 82 0.0018 32.2 16.0 138 176-345 70-214 (255)
132 PRK01742 tolB translocation pr 78.7 1.1E+02 0.0024 33.7 21.1 159 101-315 228-391 (429)
133 PRK10115 protease 2; Provision 78.4 1.5E+02 0.0032 35.0 27.8 150 156-347 199-354 (686)
134 KOG2321 WD40 repeat protein [G 78.4 51 0.0011 37.1 14.1 75 177-282 131-207 (703)
135 KOG0772 Uncharacterized conser 78.2 98 0.0021 34.5 16.0 89 158-257 295-387 (641)
136 PF09910 DUF2139: Uncharacteri 76.7 1E+02 0.0022 32.2 15.1 162 122-312 30-219 (339)
137 PF12217 End_beta_propel: Cata 76.2 95 0.0021 31.7 18.1 230 71-316 77-334 (367)
138 PF10282 Lactonase: Lactonase, 74.8 1.2E+02 0.0026 32.2 21.7 167 126-348 145-333 (345)
139 PF14870 PSII_BNR: Photosynthe 71.1 1.4E+02 0.0031 31.4 21.3 185 67-313 15-204 (302)
140 KOG3130 Uncharacterized conser 69.8 5.5 0.00012 42.3 4.1 7 603-609 363-369 (514)
141 KOG1832 HIV-1 Vpr-binding prot 69.6 2.7 5.8E-05 49.0 2.0 20 37-56 1012-1031(1516)
142 COG1520 FOG: WD40-like repeat 68.5 1.7E+02 0.0037 31.3 21.7 199 81-347 68-278 (370)
143 PRK10115 protease 2; Provision 66.9 2.7E+02 0.0058 32.9 25.7 149 156-348 247-403 (686)
144 PRK01029 tolB translocation pr 65.7 2.2E+02 0.0047 31.4 21.1 61 272-348 351-412 (428)
145 KOG0649 WD40 repeat protein [G 64.5 1.7E+02 0.0036 29.7 15.4 122 110-255 98-227 (325)
146 KOG0772 Uncharacterized conser 64.3 2.5E+02 0.0053 31.6 15.9 143 72-256 171-338 (641)
147 KOG0316 Conserved WD40 repeat- 63.9 1.7E+02 0.0037 29.6 14.4 93 102-220 82-176 (307)
148 PLN03215 ascorbic acid mannose 63.4 2.2E+02 0.0049 30.8 18.2 154 165-349 189-356 (373)
149 PLN03215 ascorbic acid mannose 61.3 2.4E+02 0.0053 30.5 16.7 102 110-228 189-305 (373)
150 KOG0296 Angio-associated migra 61.1 2.4E+02 0.0051 30.3 17.6 108 71-219 67-180 (399)
151 KOG0315 G-protein beta subunit 58.7 2.2E+02 0.0047 29.1 17.8 186 101-348 61-252 (311)
152 KOG0646 WD40 repeat protein [G 58.7 2.2E+02 0.0048 31.4 13.6 56 72-145 85-145 (476)
153 COG1520 FOG: WD40-like repeat 57.6 2.7E+02 0.0058 29.8 19.7 99 102-224 122-226 (370)
154 KOG0296 Angio-associated migra 55.5 2.9E+02 0.0063 29.6 16.3 145 134-341 75-222 (399)
155 KOG0943 Predicted ubiquitin-pr 55.3 5.7 0.00012 47.7 1.3 23 65-88 1087-1109(3015)
156 TIGR03074 PQQ_membr_DH membran 54.4 2.2E+02 0.0048 34.1 14.2 34 184-227 189-224 (764)
157 KOG2048 WD40 repeat protein [G 52.6 4E+02 0.0087 30.8 14.8 121 74-227 388-515 (691)
158 COG3386 Gluconolactonase [Carb 52.5 3E+02 0.0066 28.9 21.7 105 101-224 47-157 (307)
159 PF02239 Cytochrom_D1: Cytochr 51.8 3.4E+02 0.0074 29.3 19.0 185 101-347 16-210 (369)
160 KOG1832 HIV-1 Vpr-binding prot 50.3 8.9 0.00019 45.0 1.8 8 309-316 1268-1275(1516)
161 KOG0266 WD40 repeat-containing 49.8 4E+02 0.0088 29.6 20.8 65 134-220 257-321 (456)
162 KOG3241 Uncharacterized conser 49.2 12 0.00026 35.3 2.2 8 450-457 164-171 (227)
163 COG2706 3-carboxymuconate cycl 48.8 3.6E+02 0.0079 28.7 18.4 160 101-296 167-339 (346)
164 PF02239 Cytochrom_D1: Cytochr 48.6 3.8E+02 0.0083 28.9 15.2 194 100-341 99-304 (369)
165 PF13088 BNR_2: BNR repeat-lik 48.0 3E+02 0.0066 27.6 22.7 204 81-311 58-275 (275)
166 TIGR02658 TTQ_MADH_Hv methylam 47.5 3.9E+02 0.0085 28.8 23.8 222 81-342 57-333 (352)
167 PF12217 End_beta_propel: Cata 47.5 3.3E+02 0.0072 27.9 14.7 177 68-255 135-334 (367)
168 PLN02919 haloacid dehalogenase 46.8 6.8E+02 0.015 31.3 30.1 208 81-348 579-842 (1057)
169 PF15525 DUF4652: Domain of un 46.4 1.9E+02 0.0042 28.1 9.7 70 154-227 86-158 (200)
170 PF11134 Phage_stabilise: Phag 46.3 3.2E+02 0.0068 30.2 12.4 14 208-221 306-319 (469)
171 KOG0266 WD40 repeat-containing 46.2 4.6E+02 0.0099 29.1 16.8 94 156-283 225-321 (456)
172 PF15525 DUF4652: Domain of un 46.1 2.9E+02 0.0064 26.9 12.4 71 97-173 84-157 (200)
173 KOG2048 WD40 repeat protein [G 45.8 4.5E+02 0.0099 30.4 13.9 128 64-226 423-560 (691)
174 smart00284 OLF Olfactomedin-li 43.8 3.8E+02 0.0082 27.5 16.8 154 121-313 70-242 (255)
175 PTZ00420 coronin; Provisional 42.3 5.9E+02 0.013 29.3 22.0 50 157-220 149-200 (568)
176 PF06433 Me-amine-dh_H: Methyl 41.5 4.7E+02 0.01 28.0 13.9 102 81-195 47-162 (342)
177 PTZ00420 coronin; Provisional 41.2 6.2E+02 0.013 29.2 20.7 95 101-218 148-249 (568)
178 KOG3881 Uncharacterized conser 39.6 4.4E+02 0.0095 28.5 12.0 156 135-341 161-322 (412)
179 COG5129 MAK16 Nuclear protein 38.2 17 0.00037 35.6 1.4 14 505-518 232-245 (303)
180 KOG3064 RNA-binding nuclear pr 37.6 17 0.00036 36.6 1.2 7 245-251 57-63 (303)
181 KOG1036 Mitotic spindle checkp 37.5 5.1E+02 0.011 27.2 13.9 91 101-219 75-165 (323)
182 KOG0316 Conserved WD40 repeat- 37.3 4.6E+02 0.01 26.6 12.7 80 156-257 81-166 (307)
183 PF03066 Nucleoplasmin: Nucleo 36.5 12 0.00025 35.1 0.0 10 463-472 96-105 (149)
184 KOG3881 Uncharacterized conser 36.5 4.4E+02 0.0095 28.5 11.4 96 154-281 224-321 (412)
185 KOG0291 WD40-repeat-containing 36.0 8.1E+02 0.017 29.1 19.8 111 134-288 361-474 (893)
186 COG4880 Secreted protein conta 35.0 6.6E+02 0.014 27.8 15.1 58 98-167 403-460 (603)
187 PF03115 Astro_capsid: Astrovi 34.9 13 0.00028 43.9 0.0 13 623-635 761-773 (787)
188 KOG1332 Vesicle coat complex C 34.7 4.4E+02 0.0094 26.9 10.5 77 122-227 220-297 (299)
189 PTZ00415 transmission-blocking 34.5 22 0.00048 44.7 1.8 9 306-314 71-79 (2849)
190 PF04147 Nop14: Nop14-like fam 33.4 24 0.00052 42.5 2.0 8 43-50 88-95 (840)
191 KOG0526 Nucleosome-binding fac 32.4 35 0.00075 38.0 2.7 33 106-144 46-78 (615)
192 KOG1517 Guanine nucleotide bin 32.3 1.1E+03 0.023 29.4 16.0 194 64-317 1160-1372(1387)
193 KOG4649 PQQ (pyrrolo-quinoline 32.1 5.3E+02 0.011 26.6 10.7 104 185-340 16-124 (354)
194 KOG0289 mRNA splicing factor [ 31.7 7.4E+02 0.016 27.3 14.1 58 158-227 413-472 (506)
195 KOG2773 Apoptosis antagonizing 31.6 47 0.001 36.3 3.5 34 587-621 204-237 (483)
196 KOG0305 Anaphase promoting com 31.4 8E+02 0.017 27.7 14.4 172 101-342 197-379 (484)
197 PF03066 Nucleoplasmin: Nucleo 31.4 16 0.00034 34.2 0.0 6 333-338 17-22 (149)
198 PF13570 PQQ_3: PQQ-like domai 31.3 98 0.0021 21.4 4.1 26 300-340 15-40 (40)
199 COG3823 Glutamine cyclotransfe 31.2 3E+02 0.0065 27.4 8.6 100 184-315 50-149 (262)
200 KOG1980 Uncharacterized conser 31.2 38 0.00081 38.6 2.8 22 588-610 452-473 (754)
201 KOG0306 WD40-repeat-containing 30.6 9.8E+02 0.021 28.4 21.0 62 132-218 381-443 (888)
202 KOG1189 Global transcriptional 30.5 31 0.00068 40.0 2.1 7 464-470 802-808 (960)
203 PF03344 Daxx: Daxx Family; I 30.2 17 0.00037 42.7 0.0 9 307-315 343-351 (713)
204 PF13088 BNR_2: BNR repeat-lik 29.8 5.8E+02 0.013 25.5 14.3 151 81-250 118-275 (275)
205 COG4946 Uncharacterized protei 29.8 8.3E+02 0.018 27.3 19.4 142 101-289 287-440 (668)
206 COG3823 Glutamine cyclotransfe 29.2 5.9E+02 0.013 25.5 14.7 104 81-219 55-160 (262)
207 KOG1446 Histone H3 (Lys4) meth 29.0 7E+02 0.015 26.2 17.2 29 300-341 236-264 (311)
208 KOG0278 Serine/threonine kinas 28.2 6.7E+02 0.014 25.7 13.5 122 156-317 165-289 (334)
209 KOG0286 G-protein beta subunit 28.1 7.2E+02 0.016 26.1 20.2 38 274-314 253-292 (343)
210 COG0823 TolB Periplasmic compo 27.6 6.9E+02 0.015 27.6 12.0 150 67-244 236-386 (425)
211 KOG1036 Mitotic spindle checkp 27.4 7.5E+02 0.016 26.0 11.9 129 157-341 36-165 (323)
212 KOG1834 Calsyntenin [Extracell 26.7 38 0.00083 38.6 1.9 6 84-89 344-349 (952)
213 PF14583 Pectate_lyase22: Olig 26.1 8E+02 0.017 26.8 11.6 165 155-348 167-337 (386)
214 KOG1189 Global transcriptional 25.5 49 0.0011 38.5 2.5 6 103-108 250-255 (960)
215 KOG0289 mRNA splicing factor [ 25.0 9.6E+02 0.021 26.5 12.6 17 274-290 456-472 (506)
216 KOG3064 RNA-binding nuclear pr 24.8 29 0.00062 35.0 0.5 6 189-194 57-62 (303)
217 KOG4264 Nucleo-cytoplasmic pro 24.7 48 0.001 36.8 2.2 8 609-616 198-205 (694)
218 PF05262 Borrelia_P83: Borreli 24.6 3.2E+02 0.0069 30.8 8.6 83 207-312 373-456 (489)
219 KOG3540 Beta amyloid precursor 24.4 45 0.00098 36.6 1.9 8 466-473 167-174 (615)
220 PF13859 BNR_3: BNR repeat-lik 24.2 8.6E+02 0.019 25.6 15.4 192 129-346 3-212 (310)
221 PF05285 SDA1: SDA1; InterPro 24.2 65 0.0014 34.2 3.0 9 602-610 234-242 (324)
222 PF03115 Astro_capsid: Astrovi 23.7 26 0.00057 41.4 0.0 10 331-340 536-545 (787)
223 KOG0263 Transcription initiati 23.5 7.5E+02 0.016 29.1 11.3 22 305-340 629-650 (707)
224 KOG1523 Actin-related protein 23.1 5.9E+02 0.013 27.0 9.4 129 101-257 32-169 (361)
225 KOG1834 Calsyntenin [Extracell 22.9 46 0.001 37.9 1.7 6 137-142 344-349 (952)
226 KOG0308 Conserved WD40 repeat- 22.8 2.6E+02 0.0056 32.3 7.3 77 71-167 119-204 (735)
227 KOG0291 WD40-repeat-containing 22.7 1.3E+03 0.029 27.3 20.7 158 127-346 309-473 (893)
228 KOG0640 mRNA cleavage stimulat 22.7 7.5E+02 0.016 26.1 10.0 100 73-199 221-326 (430)
229 KOG0235 Phosphoglycerate mutas 22.2 75 0.0016 31.6 2.8 24 598-621 128-151 (214)
230 KOG4364 Chromatin assembly fac 21.2 60 0.0013 37.1 2.1 6 506-511 526-531 (811)
231 KOG1538 Uncharacterized conser 21.0 1.4E+03 0.03 26.9 15.5 60 70-143 14-73 (1081)
232 COG5406 Nucleosome binding fac 20.8 62 0.0013 36.9 2.1 56 511-567 927-982 (1001)
233 KOG0270 WD40 repeat-containing 20.7 1.2E+03 0.025 25.9 15.3 190 83-342 257-452 (463)
234 COG4880 Secreted protein conta 20.1 2E+02 0.0044 31.5 5.6 30 183-225 569-598 (603)
No 1
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.6e-81 Score=636.18 Aligned_cols=477 Identities=45% Similarity=0.747 Sum_probs=381.9
Q ss_pred CCCCCCCCCCCc--chhHHHHHHHHHHHHHHhhhcCCCcccHHHHHHHhhHhhhceeeEEeeccCCCCCCCCceEEEEec
Q 006473 1 MGKKNKKAGKGK--EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINP 78 (643)
Q Consensus 1 m~k~~k~~~~~~--~k~~~k~~k~~~k~~~~~~~~~~~~edi~~~l~~~~~~~~~~~~~~~~~~~~~P~~R~~~s~~~~~ 78 (643)
||||.||.+++| +|+++|+.|+..|++ +++.++.|+..|...++..+++....+....+++|+||.++++++.|
T Consensus 1 MgKK~Kk~kkgk~aek~a~K~dkK~akr~----kkl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nP 76 (521)
T KOG1230|consen 1 MGKKNKKDKKGKGAEKTAAKQDKKFAKRK----KKLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANP 76 (521)
T ss_pred CCccccCcccccchhhhHHHHHHHHHhhh----hhcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeecc
Confidence 999977654444 444444444444333 56677777777777888888887677777889999999999999999
Q ss_pred cCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCccCCCCCCcceecCe
Q 006473 79 LKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 79 ~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~-~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
.+ +.|+||||++++|+.+.+||+||+||+.+++|+++.+++.|+||++|++|++. |.+|||||++.++++.+|+||.|
T Consensus 77 ek-eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD 155 (521)
T KOG1230|consen 77 EK-EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD 155 (521)
T ss_pred Cc-ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhh
Confidence 86 59999999999999999999999999999999999999999999999999994 89999999999999999999999
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcc
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (643)
+|.||+.+++|+++...+.|+||+||+|++++++|+|||||+++.+...|+||||+||+.+++|+.+.+. +..|.||+
T Consensus 156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRS 233 (521)
T KOG1230|consen 156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRS 233 (521)
T ss_pred eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984 45899999
Q ss_pred ceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-----CeeEEeccCCCCCCCceeeEEEEE-CCeEE
Q 006473 238 GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVH-KKRAL 310 (643)
Q Consensus 238 ~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~l~~~g~~P~~R~g~s~~~~-~~~iy 310 (643)
||++.+. ++.|||+|||+.. ..+....+|..|+|+|.|++.. +.|+++.+.|..|.||+|++++++ +++.|
T Consensus 234 Gcq~~vtpqg~i~vyGGYsK~--~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal 311 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGYSKQ--RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKAL 311 (521)
T ss_pred cceEEecCCCcEEEEcchhHh--hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceE
Confidence 9999999 9999999999987 5777888999999999999988 899999999999999999999999 46999
Q ss_pred EeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccc
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDE 390 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (643)
+|||+.+.+..++.+.+.|+||||.||+.+++|+...+.+.++.... +|..++ +..+.+.++..+.... |-
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~--~r~~~K----d~~k~~~~~~~G~~tk---d~ 382 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATS--RRRSRK----DQEKELQRPTVGPNTK---DL 382 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccc--cccccc----cccccccCcccCCCcc---cc
Confidence 99999999999999999999999999999999999988766544332 111111 2222222222221110 00
Q ss_pred hhhhhhhhhhcccccccccccCCcceeecCceee-e--ecCCCCCCc-cccccccccCCCCCcCCccccccceeeecCeE
Q 006473 391 NAEYYEEADEMESNIDNLSECVPNSVIVDDGVLA-A--KSGGKPYES-KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTL 466 (643)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~L 466 (643)
+ -+.. -+....+-++++. + ...+....+ ++............--|.||.++.++|..++|
T Consensus 383 e-----------~~~v-----~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~ 446 (521)
T KOG1230|consen 383 E-----------VQAV-----DKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPRMDDELSVKVGVL 446 (521)
T ss_pred c-----------ceec-----ceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCccCCCccCcccceE
Confidence 0 0000 0001111122221 0 111111111 11111112222222259999999999999999
Q ss_pred EEecceEeecCeEEeecceeccccCCccceEEeccCCch--hhcccc
Q 006473 467 YVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES--EWVEAS 511 (643)
Q Consensus 467 yi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~~~~~--~w~~~~ 511 (643)
||+||+++.+|+..||.|||+|||.++..|+.|.+.+.. +|.+..
T Consensus 447 ~i~gGi~ee~d~q~tl~dfyal~~hr~~~~K~L~~~sfe~~E~re~~ 493 (521)
T KOG1230|consen 447 YIGGGIFEERDWQPTLRDFYALDLHRNEKGKQLKTKSFELCEWRERR 493 (521)
T ss_pred EecCCCcccccccchHHHHhhhhhhhhhhhhhhccCCchhhhhhhhh
Confidence 999999999999999999999999998899999999764 798543
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-42 Score=370.75 Aligned_cols=280 Identities=23% Similarity=0.413 Sum_probs=217.1
Q ss_pred hceeeEEeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCCC-ceeeE
Q 006473 52 AKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP-RSAHQ 129 (643)
Q Consensus 52 ~~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~p-Rs~ha 129 (643)
..|.++.. ....+|.||.+|+++++ +++||||||.... .....+++|+||+.+++|..++++. .|.+ +.+|+
T Consensus 7 ~~W~~~~~-~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~ 80 (341)
T PLN02153 7 GGWIKVEQ-KGGKGPGPRCSHGIAVV---GDKLYSFGGELKP--NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR 80 (341)
T ss_pred CeEEEecC-CCCCCCCCCCcceEEEE---CCEEEEECCccCC--CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE
Confidence 34554443 23347899999999999 8999999996322 2235689999999999999987653 3332 45899
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC---CCCCCCceeEEEEECCEEEEEeeeecCCC--c
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPRSGHRMVLYKHKIIVFGGFYDTLR--E 204 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~---g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~--~ 204 (643)
+++++++||||||..... .++++++||+.+++|+.++.. ..|.+|.+|++++++++||||||+..... .
T Consensus 81 ~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKR------EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKT 154 (341)
T ss_pred EEEECCEEEEECCCCCCC------ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCC
Confidence 999999999999975432 468999999999999998752 12889999999999999999999864321 1
Q ss_pred eeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 006473 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (643)
...++++++||+.+++|+.++.+ ...|.+|.+|++++++++|||+||..... ..+ .......+++++||+.+++|
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~--~~g-G~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQGKIWVVYGFATSI--LPG-GKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECCeEEEEecccccc--ccC-CccceecCceEEEEcCCCcE
Confidence 22468999999999999998876 33468999999999999999999976320 000 00112367899999999999
Q ss_pred EEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 285 SKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 285 ~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+++...+..|.+|.+|++++++++||||||.......++.......|+||+||+.+++|+.+..
T Consensus 230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 9998877789999999999999999999997543222222234567899999999999998865
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.7e-42 Score=381.25 Aligned_cols=259 Identities=25% Similarity=0.447 Sum_probs=214.4
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCC-CCCC-CceeeEEEEECCEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP-NSPP-PRSAHQAVSWKNYLY 138 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~-~~P~-pRs~ha~~~~~~~iy 138 (643)
....+|.||.+|+++++ ++.||||||..... ....+++|+||+.+++|..++.. ..|. +|.+|++++++++||
T Consensus 158 ~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~~--~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY 232 (470)
T PLN02193 158 QKGEGPGLRCSHGIAQV---GNKIYSFGGEFTPN--QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY 232 (470)
T ss_pred cCCCCCCCccccEEEEE---CCEEEEECCcCCCC--CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE
Confidence 33457899999999999 89999999963222 22568999999999999987654 2344 367999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
||||.... ..++++|+||+.+++|+.+.+.+ .|.+|++|++++++++||||||+.... +++++++||+.
T Consensus 233 vfGG~~~~------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~----~~~~~~~yd~~ 302 (470)
T PLN02193 233 VFGGRDAS------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA----RLKTLDSYNIV 302 (470)
T ss_pred EECCCCCC------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC----CcceEEEEECC
Confidence 99997643 24799999999999999997732 289999999999999999999986532 47899999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCc
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (643)
+++|+.++.. ...|.+|.+|++++++++|||+||+.+. .++++++||+.+++|+++..++.+|.+|
T Consensus 303 t~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~------------~~~dv~~yD~~t~~W~~~~~~g~~P~~R 368 (470)
T PLN02193 303 DKKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC------------EVDDVHYYDPVQDKWTQVETFGVRPSER 368 (470)
T ss_pred CCEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC------------ccCceEEEECCCCEEEEeccCCCCCCCc
Confidence 9999998764 3357899999999999999999998643 3688999999999999999888889999
Q ss_pred eeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 298 ~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.+|++++++++||||||....+.........+.|++|+||+.+++|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 999999999999999998653322222224567899999999999998875
No 4
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=345.90 Aligned_cols=272 Identities=28% Similarity=0.582 Sum_probs=230.2
Q ss_pred CCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEEC-CEEEEE
Q 006473 119 PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVF 195 (643)
Q Consensus 119 ~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~-~~lyvf 195 (643)
-..|.||++.++++. .+-|+||||++..... .+.|||+|.||+.+++|..+..+..|+||++|.++++. |.||||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqk--T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQK--THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeeccee--EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 345889999999987 5689999999876443 67899999999999999999887779999999999995 899999
Q ss_pred eeeecCCCcee--eeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeee
Q 006473 196 GGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273 (643)
Q Consensus 196 GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d 273 (643)
||-.....+.. .+.|+|.||+.+++|.++.... .|+||+||-|+++..+|+||||+... +....++||
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~-------nr~y~YyND 208 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDS-------NRDYIYYND 208 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccCC---CCCCCccceeEEeeeeEEEEcceecC-------CCceEEeee
Confidence 99765544433 4789999999999999998874 49999999999999999999998764 345678999
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCC-----CcEEEeE
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-----HRWYPLE 347 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t-----~~W~~l~ 347 (643)
+|+||+.+.+|+++.+.|..|.||+||++++. .+.|||+||++......+...+...+|+|.++++. ..|.++.
T Consensus 209 vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 209 VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred eEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 99999999999999999889999999999999 99999999998776666667788999999999998 5676666
Q ss_pred ecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeec
Q 006473 348 LRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKS 427 (643)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (643)
..+
T Consensus 289 p~g----------------------------------------------------------------------------- 291 (521)
T KOG1230|consen 289 PSG----------------------------------------------------------------------------- 291 (521)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 522
Q ss_pred CCCCCCccccccccccCCCCCcCCccccccceeeecC-eEEEecceEeec-CeE----EeecceeccccCCccceEEecc
Q 006473 428 GGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD-TLYVYGGMMEIN-DQE----ITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~-~Lyi~GG~~e~g-~~e----~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
+.|.||.+.+.+|..| .-|.|||++..- ..| .-+||||.|||.. ++|....-
T Consensus 292 ---------------------~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-nrW~~~ql 349 (521)
T KOG1230|consen 292 ---------------------VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-NRWSEGQL 349 (521)
T ss_pred ---------------------CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-chhhHhhh
Confidence 2599999999988766 899999987421 111 3499999999988 99977643
No 5
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7.3e-40 Score=316.29 Aligned_cols=263 Identities=22% Similarity=0.441 Sum_probs=222.6
Q ss_pred CCCCceEEEEeccCCCEEEEEcceecCCC-CceeeccEEEEECCCCcEEEecCC-----------CCCCCceeeEEEEEC
Q 006473 67 SPRSNCSLNINPLKETELILYGGEFYNGN-KTYVYGDLYRYDVEKQEWKVISSP-----------NSPPPRSAHQAVSWK 134 (643)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyvfGG~~~~g~-~~~~~ndv~~yd~~~~~W~~l~s~-----------~~P~pRs~ha~~~~~ 134 (643)
+.|.+|+++.+ +..||-|||...... ...---||+++|..+-.|.++++. -.|-.|++|+++.+.
T Consensus 12 PrRVNHAavaV---G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~ 88 (392)
T KOG4693|consen 12 PRRVNHAAVAV---GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ 88 (392)
T ss_pred cccccceeeee---cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc
Confidence 46899999999 899999999631111 011123799999999999988752 246679999999999
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
+++||.||.+.... ..|-++.||++++.|.+....|. |.+|-||++|++++.+|||||+.... .++.++++.
T Consensus 89 d~~yvWGGRND~eg-----aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--~~FS~d~h~ 161 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEG-----ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--QRFSQDTHV 161 (392)
T ss_pred ceEEEEcCccCccc-----ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH--Hhhhcccee
Confidence 99999999987654 36899999999999999888774 99999999999999999999997654 458999999
Q ss_pred EEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCC
Q 006473 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 293 (643)
+|+.+.+|+.+... +.+|.-|-.|+++++++.+|||||.... ............+.+-.||+.|..|.+-...+..
T Consensus 162 ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~--~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 162 LDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDE--SGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred Eeccceeeeehhcc--CCCchhhhhhhhhhccceEEEecccccc--CCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 99999999999887 6678899999999999999999999876 2333344455677888999999999999888889
Q ss_pred CCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006473 294 PGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (643)
Q Consensus 294 P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (643)
|..|..|++.+.++.||||||+++. -..-+|+||+||+.+..|..+..++
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~-------ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGT-------LNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred CCcccccceEEEcceEEEecccchh-------hhhhhcceeecccccchheeeeccC
Confidence 9999999999999999999999763 2456899999999999999999843
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.5e-38 Score=347.91 Aligned_cols=299 Identities=22% Similarity=0.381 Sum_probs=238.5
Q ss_pred CCCCC-CceEEEEeccCCCEEEEEcceecCCCCceeeccE--EEEECCC----CcEEEecCC-CCCCCceeeEEEEECCE
Q 006473 65 APSPR-SNCSLNINPLKETELILYGGEFYNGNKTYVYGDL--YRYDVEK----QEWKVISSP-NSPPPRSAHQAVSWKNY 136 (643)
Q Consensus 65 ~P~~R-~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv--~~yd~~~----~~W~~l~s~-~~P~pRs~ha~~~~~~~ 136 (643)
+|... .+..+++. +++|+.|+|.. +. .++.+ |.+++.+ ++|..++++ ..|.||++|+++++++.
T Consensus 106 ~~~g~~~g~~f~~~---~~~ivgf~G~~--~~---~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 106 HPIEKRPGVKFVLQ---GGKIVGFHGRS--TD---VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred cccccCCCCEEEEc---CCeEEEEeccC--CC---cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 44433 34445443 79999999952 22 34444 4446544 799998764 35889999999999999
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CCC-CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEE
Q 006473 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 137 iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~-~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
||||||...... ...+++|+||+.+++|+.++..+ .|. +|.+|++++++++||||||+... ..++++|+|
T Consensus 178 iyv~GG~~~~~~----~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~----~~~ndv~~y 249 (470)
T PLN02193 178 IYSFGGEFTPNQ----PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS----RQYNGFYSF 249 (470)
T ss_pred EEEECCcCCCCC----CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC----CCCccEEEE
Confidence 999999854321 14578999999999999887643 344 36799999999999999998643 358999999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCC
Q 006473 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (643)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (643)
|+.+++|+.+.++. ..|.+|++|++++++++|||+||+... ..++++++||+.+++|+.+...+.+|
T Consensus 250 D~~t~~W~~l~~~~--~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~~~~~~ 316 (470)
T PLN02193 250 DTTTNEWKLLTPVE--EGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDKKWFHCSTPGDSF 316 (470)
T ss_pred ECCCCEEEEcCcCC--CCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCCEEEeCCCCCCCC
Confidence 99999999998763 348899999999999999999998764 45678999999999999998766678
Q ss_pred CCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhc
Q 006473 295 GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374 (643)
Q Consensus 295 ~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (643)
.+|.+|++++++++|||+||... ..+++|++||+.+++|..+...+
T Consensus 317 ~~R~~~~~~~~~gkiyviGG~~g----------~~~~dv~~yD~~t~~W~~~~~~g------------------------ 362 (470)
T PLN02193 317 SIRGGAGLEVVQGKVWVVYGFNG----------CEVDDVHYYDPVQDKWTQVETFG------------------------ 362 (470)
T ss_pred CCCCCcEEEEECCcEEEEECCCC----------CccCceEEEECCCCEEEEeccCC------------------------
Confidence 89999999999999999999753 23689999999999999887521
Q ss_pred cCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccc
Q 006473 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGR 454 (643)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R 454 (643)
..|.||
T Consensus 363 --------------------------------------------------------------------------~~P~~R 368 (470)
T PLN02193 363 --------------------------------------------------------------------------VRPSER 368 (470)
T ss_pred --------------------------------------------------------------------------CCCCCc
Confidence 048999
Q ss_pred cccceeeecCeEEEecceEeecC-----eEEeecceeccccCCccceEEecc
Q 006473 455 INSCMVVGKDTLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 455 ~~~~~~v~~~~Lyi~GG~~e~g~-----~e~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
..|+++++++.||||||...... ....++|+|.||+.+ +.|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-CEEEEccc
Confidence 99999999999999999753110 113478999999999 99998864
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.1e-38 Score=352.94 Aligned_cols=284 Identities=21% Similarity=0.365 Sum_probs=247.6
Q ss_pred CCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCcc
Q 006473 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (643)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~ 144 (643)
.+.+|..... .. .+.||++||... .....+.+.+||+.+++|..++.+ |.+|..++++++++.||++||.+
T Consensus 272 ~~~~~t~~r~-~~---~~~l~~vGG~~~---~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 272 MQSPRTRPRR-SV---SGKLVAVGGYNR---QGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccCCCcccCc-CC---CCeEEEECCCCC---CCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEcccc
Confidence 4555554433 22 588999999632 233678999999999999999885 58999999999999999999998
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
+. ...++.+|+||+.+++|+.+++ |+.+|.+|+++++++.||++||+++ ..+++.+++||+.+++|+.+
T Consensus 343 ~~-----~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v~~l~g~iYavGG~dg----~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 343 SG-----SDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGVAVLDGKLYAVGGFDG----EKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CC-----CcccceEEEecCCCCceeccCC--ccCccccceeEEECCEEEEEecccc----ccccccEEEecCCCCccccc
Confidence 51 2368999999999999999888 9999999999999999999999985 34699999999999999999
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
+++ +.+|++|+++++++.||++||+++. ...++.+.+|||.+++|+.+++| +.+|.++++++
T Consensus 412 a~m-----~~~r~~~gv~~~~g~iYi~GG~~~~----------~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~ 473 (571)
T KOG4441|consen 412 APM-----LTRRSGHGVAVLGGKLYIIGGGDGS----------SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV 473 (571)
T ss_pred CCC-----CcceeeeEEEEECCEEEEEcCcCCC----------ccccceEEEEcCCCCceeecCCc---ccccccceEEE
Confidence 999 7799999999999999999999887 23889999999999999999987 77999999999
Q ss_pred ECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcc
Q 006473 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384 (643)
Q Consensus 305 ~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (643)
++++||++||.++ ......+++||+.+++|..+..
T Consensus 474 ~~~~iYvvGG~~~---------~~~~~~VE~ydp~~~~W~~v~~------------------------------------ 508 (571)
T KOG4441|consen 474 LNGKIYVVGGFDG---------TSALSSVERYDPETNQWTMVAP------------------------------------ 508 (571)
T ss_pred ECCEEEEECCccC---------CCccceEEEEcCCCCceeEccc------------------------------------
Confidence 9999999999986 2235669999999999999976
Q ss_pred cCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecC
Q 006473 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD 464 (643)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~ 464 (643)
|+.+|.++++++.++
T Consensus 509 -----------------------------------------------------------------m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 509 -----------------------------------------------------------------MTSPRSAVGVVVLGG 523 (571)
T ss_pred -----------------------------------------------------------------CccccccccEEEECC
Confidence 799999999999999
Q ss_pred eEEEecceEeecCeEEeecceeccccCCccceEEecc
Q 006473 465 TLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIP 501 (643)
Q Consensus 465 ~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~ 501 (643)
.||+.||.. ..-.|+.+-.||..+ |.|+.+.+
T Consensus 524 ~ly~vGG~~----~~~~l~~ve~ydp~~-d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFD----GNNNLNTVECYDPET-DTWTEVTE 555 (571)
T ss_pred EEEEEeccc----CccccceeEEcCCCC-CceeeCCC
Confidence 999999953 233588888889998 99999987
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=7.9e-37 Score=326.12 Aligned_cols=281 Identities=21% Similarity=0.340 Sum_probs=219.6
Q ss_pred CCCCcEEEecCCC--CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-CCC-CCcee
Q 006473 108 VEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGH 183 (643)
Q Consensus 108 ~~~~~W~~l~s~~--~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~-~Rs~h 183 (643)
+....|..+.... .|.||.+|+++++++.||||||...... ...+++|+||+.+++|+.+++.+ .|. .+.+|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC----ceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 3567899997642 5889999999999999999999854321 24589999999999999987643 233 23489
Q ss_pred EEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccC
Q 006473 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (643)
Q Consensus 184 ~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~ 263 (643)
++++++++||||||+.... .++++++||+.+++|+.++.++....|.+|.+|++++++++|||+||+....
T Consensus 80 ~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~----- 150 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR----EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG----- 150 (341)
T ss_pred EEEEECCEEEEECCCCCCC----ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC-----
Confidence 9999999999999986432 4789999999999999998764334488999999999999999999986430
Q ss_pred CCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcE
Q 006473 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (643)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (643)
.......++++++||+.+++|+.++.++.+|.+|.+|++++++++|||+||.......+. ......++|++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG-~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC-ccceecCceEEEEcCCCcE
Confidence 000112467899999999999999987777789999999999999999999753211000 0012368899999999999
Q ss_pred EEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCcee
Q 006473 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (643)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (643)
..+...+
T Consensus 230 ~~~~~~g------------------------------------------------------------------------- 236 (341)
T PLN02153 230 TEVETTG------------------------------------------------------------------------- 236 (341)
T ss_pred EeccccC-------------------------------------------------------------------------
Confidence 9987521
Q ss_pred eeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeec-----CeEEeecceeccccCCccceEE
Q 006473 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIN-----DQEITLDDLYSLNLSKLDEWKC 498 (643)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g-----~~e~tl~D~~~ldl~k~d~w~~ 498 (643)
-+|.+|..++++++++.||||||..... .....++|+|.||+.+ +.|+.
T Consensus 237 -------------------------~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-~~W~~ 290 (341)
T PLN02153 237 -------------------------AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-LVWEK 290 (341)
T ss_pred -------------------------CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-cEEEe
Confidence 0599999999999999999999974210 1223478999999998 99999
Q ss_pred ecc
Q 006473 499 IIP 501 (643)
Q Consensus 499 i~~ 501 (643)
+..
T Consensus 291 ~~~ 293 (341)
T PLN02153 291 LGE 293 (341)
T ss_pred ccC
Confidence 864
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-36 Score=322.23 Aligned_cols=249 Identities=19% Similarity=0.288 Sum_probs=191.8
Q ss_pred CCCCceEEEEeccCCCEEEEEcceecCC------CCceeeccEEEEECCC--CcEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 67 SPRSNCSLNINPLKETELILYGGEFYNG------NKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyvfGG~~~~g------~~~~~~ndv~~yd~~~--~~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
..++++.++++ ++.|||+||..+.. .....++++|+|+... .+|..+++ +|.+|..|+++++++.||
T Consensus 2 ~~~~g~~~~~~---~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~--lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII---GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ--LPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE---CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc--CCccccceEEEEECCEEE
Confidence 45678888888 89999999986542 2346789999996332 37998875 468898888899999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcE----EEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEE
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQW----EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W----~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
++||..... .++++|+||+.++.| ..+++ +|.+|.+|++++++++|||+||.... ..++++++|
T Consensus 77 viGG~~~~~------~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~----~~~~~v~~y 144 (323)
T TIGR03548 77 YIGGSNSSE------RFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNG----KPSNKSYLF 144 (323)
T ss_pred EEcCCCCCC------CceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCC----ccCceEEEE
Confidence 999975432 468999999999998 55554 79999999999999999999997532 247899999
Q ss_pred EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCC--
Q 006473 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM-- 292 (643)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~-- 292 (643)
|+.+++|+.+++++ ..+|..|++++++++|||+||.... ...++++||+.+++|+.+..+..
T Consensus 145 d~~~~~W~~~~~~p----~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~~ 208 (323)
T TIGR03548 145 NLETQEWFELPDFP----GEPRVQPVCVKLQNELYVFGGGSNI------------AYTDGYKYSPKKNQWQKVADPTTDS 208 (323)
T ss_pred cCCCCCeeECCCCC----CCCCCcceEEEECCEEEEEcCCCCc------------cccceEEEecCCCeeEECCCCCCCC
Confidence 99999999998762 2479999999999999999998643 24578999999999999987632
Q ss_pred CCCCceeeE-EEEECCeEEEeccccccccCcc-----------------------ccccccCCcEEEEECCCCcEEEeEe
Q 006473 293 PPGPRAGFS-MCVHKKRALLFGGVVDMEMKGD-----------------------VIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 293 ~P~~R~g~s-~~~~~~~iyvfGG~~~~~~~~~-----------------------~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.|..+.+++ +++.+++||||||.+....... .-...|.+.+++||+.+++|+.++.
T Consensus 209 ~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 209 EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 244444444 4455799999999864210000 0001245789999999999998875
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2e-36 Score=323.61 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=190.7
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEEC--CCCcEEEecCCCCC-CCceeeEEEEECCEEEE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV--EKQEWKVISSPNSP-PPRSAHQAVSWKNYLYI 139 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~--~~~~W~~l~s~~~P-~pRs~ha~~~~~~~iyv 139 (643)
+++|.+|.+++++++ +++|||+||. . .+.+|+||+ .+++|..++++ | .+|.+|++++++++|||
T Consensus 2 ~~lp~~~~~~~~~~~---~~~vyv~GG~--~------~~~~~~~d~~~~~~~W~~l~~~--p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 2 PDLPVGFKNGTGAII---GDKVYVGLGS--A------GTSWYKLDLKKPSKGWQKIADF--PGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCCccccCceEEEE---CCEEEEEccc--c------CCeeEEEECCCCCCCceECCCC--CCCCcccceEEEECCEEEE
Confidence 468899998888888 8999999995 1 257899996 57899999875 4 48999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEE-EECCEEEEEeeeecCCC---------------
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLR--------------- 203 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~-~~~~~lyvfGG~~~~~~--------------- 203 (643)
+||............++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||+.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 9997543211112357899999999999999974 357888888877 78999999999853200
Q ss_pred ---------------ceeeeccEEEEEcCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEcCCCCCCCCccCCCCC
Q 006473 204 ---------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 204 ---------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
...+++.+++||+.+++|+.+.++ |. +|.+++++.++++|||+||....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p~~~r~~~~~~~~~~~iyv~GG~~~~---------- 212 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----PFLGTAGSAIVHKGNKLLLINGEIKP---------- 212 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----CCCcCCCceEEEECCEEEEEeeeeCC----------
Confidence 001247899999999999999887 54 78999999999999999998543
Q ss_pred CceeeeEEEEe--CCCCeeEEeccCCCC----CCCceeeEEEEECCeEEEeccccccccCccc----cc----cccCCcE
Q 006473 268 GIIHSDLWSLD--PRTWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLFGGVVDMEMKGDV----IM----SLFLNEL 333 (643)
Q Consensus 268 ~~~~~dv~~yd--~~t~~W~~l~~~g~~----P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~----~~----~~~~ndl 333 (643)
+.....+++|+ +.+++|+.+..+..+ +..|.+|++++++++|||+||.+.....+.. .. ....+.+
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS 292 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence 12234455554 577899999876332 1234577788999999999998632110000 00 0012458
Q ss_pred EEEECCCCcEEEeEe
Q 006473 334 YGFQLDNHRWYPLEL 348 (643)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (643)
.+||+++++|..+..
T Consensus 293 e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 293 EVYALDNGKWSKVGK 307 (346)
T ss_pred eEEEecCCcccccCC
Confidence 899999999987765
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=341.34 Aligned_cols=265 Identities=13% Similarity=0.207 Sum_probs=220.6
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+++||+.+++|..++++ |.+|.+|+++++++.|||+||..... ..++++|+||+.++.|..+++ +|.+|
T Consensus 272 ~~v~~yd~~~~~W~~l~~m--p~~r~~~~~a~l~~~IYviGG~~~~~-----~~~~~v~~Yd~~~n~W~~~~~--m~~~R 342 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI--PNHIINYASAIVDNEIIIAGGYNFNN-----PSLNKVYKINIENKIHVELPP--MIKNR 342 (557)
T ss_pred CCEEEEeCCCCeEEECCCC--CccccceEEEEECCEEEEEcCCCCCC-----CccceEEEEECCCCeEeeCCC--Ccchh
Confidence 4789999999999999764 68899999999999999999974221 146899999999999999987 89999
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
++|++++++++||++||+.+. ..++.+++||+.+++|+.++++ |.+|.++++++++++|||+||.......
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~~m-----p~~r~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGT----NVERTIECYTMGDDKWKMLPDM-----PIALSSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred hceeEEEECCEEEEECCcCCC----CCCceEEEEECCCCeEEECCCC-----CcccccccEEEECCEEEEEeCCCccccc
Confidence 999999999999999998543 2478899999999999999988 8999999999999999999998642000
Q ss_pred -cc------CCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcE
Q 006473 261 -DK------NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (643)
Q Consensus 261 -~~------~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl 333 (643)
.. ........++.+++|||.+++|+.++++ |.+|.++++++++++|||+||.++. ....+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~--------~~~~~~v 482 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE--------KNVKTCI 482 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC--------CccceeE
Confidence 00 0000012367899999999999999865 7789999999999999999998641 1123568
Q ss_pred EEEECCC-CcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccC
Q 006473 334 YGFQLDN-HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECV 412 (643)
Q Consensus 334 ~~yd~~t-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (643)
++|||.+ ++|+.++.
T Consensus 483 e~Ydp~~~~~W~~~~~---------------------------------------------------------------- 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT---------------------------------------------------------------- 498 (557)
T ss_pred EEecCCCCCCeeEccc----------------------------------------------------------------
Confidence 9999999 89998876
Q ss_pred CcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006473 413 PNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (643)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k 492 (643)
||.+|..+++++++++||++||... ...+.+||+.+
T Consensus 499 -------------------------------------m~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~ 534 (557)
T PHA02713 499 -------------------------------------TESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYT 534 (557)
T ss_pred -------------------------------------cCcccccceeEEECCEEEEEeeecc-------eeehhhcCccc
Confidence 7999999999999999999999853 23577899999
Q ss_pred ccceEEeccCC
Q 006473 493 LDEWKCIIPAS 503 (643)
Q Consensus 493 ~d~w~~i~~~~ 503 (643)
+.|+.+.+..
T Consensus 535 -~~W~~~~~~~ 544 (557)
T PHA02713 535 -YEWNHICHQH 544 (557)
T ss_pred -ccccchhhhc
Confidence 9999998764
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.8e-35 Score=319.51 Aligned_cols=310 Identities=19% Similarity=0.275 Sum_probs=228.3
Q ss_pred eeEEeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECC--CCcEEEecCCCCCCCceeeEEEE
Q 006473 55 KEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVS 132 (643)
Q Consensus 55 ~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~--~~~W~~l~s~~~P~pRs~ha~~~ 132 (643)
..+.++..+++|.||..++.+++ +++|||+||. . .+.+|+||+. +++|..+++++ ..+|++|++++
T Consensus 15 ~~~~~~~l~~lP~~~~~~~~~~~---~~~iyv~gG~---~-----~~~~~~~d~~~~~~~W~~l~~~p-~~~r~~~~~v~ 82 (376)
T PRK14131 15 FAANAEQLPDLPVPFKNGTGAID---NNTVYVGLGS---A-----GTSWYKLDLNAPSKGWTKIAAFP-GGPREQAVAAF 82 (376)
T ss_pred cceecccCCCCCcCccCCeEEEE---CCEEEEEeCC---C-----CCeEEEEECCCCCCCeEECCcCC-CCCcccceEEE
Confidence 44556678889999998888888 8999999995 1 1457899986 47899987643 25899999999
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCC--------
Q 006473 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLR-------- 203 (643)
Q Consensus 133 ~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~-------- 203 (643)
+++.|||+||............++++|+||+.+++|+.++. ..|.+|.+|++++ .+++||+|||......
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~ 161 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhh
Confidence 99999999998642111112357899999999999999975 2477888898887 7999999999753100
Q ss_pred ----------------------ceeeeccEEEEEcCCCceEEeccCCCCCCC-CCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 204 ----------------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 204 ----------------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
...++++|++||+.+++|+.+.++ | .+|.+|+++.++++|||+||....
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p~~~~~~~a~v~~~~~iYv~GG~~~~--- 233 (376)
T PRK14131 162 AAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----PFLGTAGSAVVIKGNKLWLINGEIKP--- 233 (376)
T ss_pred hcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----CCCCCCcceEEEECCEEEEEeeeECC---
Confidence 001357899999999999998877 5 478899999999999999997543
Q ss_pred ccCCCCCCceeeeEE--EEeCCCCeeEEeccCCCCC-----CCceeeEEEEECCeEEEeccccccccCcccccccc----
Q 006473 261 DKNQSEKGIIHSDLW--SLDPRTWEWSKVKKIGMPP-----GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF---- 329 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~--~yd~~t~~W~~l~~~g~~P-----~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~---- 329 (643)
+....++| .||+.+++|+.+..+..++ ..+.++.+++++++|||+||........+.....+
T Consensus 234 -------~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 306 (376)
T PRK14131 234 -------GLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306 (376)
T ss_pred -------CcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence 11223344 5678899999998762211 11234456788999999999864321100000000
Q ss_pred ----CCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhccccc
Q 006473 330 ----LNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNI 405 (643)
Q Consensus 330 ----~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (643)
...+.+||+++++|..+..
T Consensus 307 ~~~~~~~~e~yd~~~~~W~~~~~--------------------------------------------------------- 329 (376)
T PRK14131 307 GLKKSWSDEIYALVNGKWQKVGE--------------------------------------------------------- 329 (376)
T ss_pred CCcceeehheEEecCCcccccCc---------------------------------------------------------
Confidence 1246799999999987654
Q ss_pred ccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecce
Q 006473 406 DNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDL 485 (643)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~ 485 (643)
||.||..++++++++.|||+||....+ ..++|+
T Consensus 330 --------------------------------------------lp~~r~~~~av~~~~~iyv~GG~~~~~---~~~~~v 362 (376)
T PRK14131 330 --------------------------------------------LPQGLAYGVSVSWNNGVLLIGGETAGG---KAVSDV 362 (376)
T ss_pred --------------------------------------------CCCCccceEEEEeCCEEEEEcCCCCCC---cEeeeE
Confidence 799999999999999999999975444 458899
Q ss_pred eccccCCccceE
Q 006473 486 YSLNLSKLDEWK 497 (643)
Q Consensus 486 ~~ldl~k~d~w~ 497 (643)
|.|++.. ..+.
T Consensus 363 ~~~~~~~-~~~~ 373 (376)
T PRK14131 363 TLLSWDG-KKLT 373 (376)
T ss_pred EEEEEcC-CEEE
Confidence 9988875 4443
No 13
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=330.97 Aligned_cols=245 Identities=13% Similarity=0.219 Sum_probs=208.4
Q ss_pred eeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
|....++|.+|.+++++++ ++.|||+||...+ ....+.+++|||.+++|..++++ |.+|++|++++++++||
T Consensus 284 W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IY 355 (557)
T PHA02713 284 YSVISTIPNHIINYASAIV---DNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIY 355 (557)
T ss_pred EEECCCCCccccceEEEEE---CCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEE
Confidence 3455678999999999998 8999999995222 22468999999999999998775 68999999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCC--------------c
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR--------------E 204 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~--------------~ 204 (643)
++||..... .++.+++||+.+++|+.+++ +|.+|++|++++++++||++||...... .
T Consensus 356 viGG~~~~~------~~~sve~Ydp~~~~W~~~~~--mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 356 AIGGQNGTN------VERTIECYTMGDDKWKMLPD--MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCcCCCC------CCceEEEEECCCCeEEECCC--CCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 999975332 46889999999999999987 8999999999999999999999864211 0
Q ss_pred eeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC-Ce
Q 006473 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WE 283 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~ 283 (643)
...++.+++|||.+++|+.++++ |.+|.++++++++++|||+||++.. ....+.+++|||.+ ++
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m-----~~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF-----WTGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNTYNG 492 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC-----CcccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCCCCC
Confidence 11367899999999999999988 8899999999999999999998743 12345689999999 89
Q ss_pred eEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEec
Q 006473 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (643)
Q Consensus 284 W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (643)
|+.+.++ |.+|.++++++++++||++||..+ ...+.+||+.+++|+.+...
T Consensus 493 W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 493 WELITTT---ESRLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eeEcccc---CcccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhhh
Confidence 9999865 889999999999999999999865 23689999999999999874
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.1e-35 Score=329.46 Aligned_cols=242 Identities=23% Similarity=0.400 Sum_probs=218.3
Q ss_pred eccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEE
Q 006473 60 EDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYI 139 (643)
Q Consensus 60 ~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyv 139 (643)
....++|.+|..++++++ ++.||++||... ....++.+++||+.+++|..+++++ .+|++|+++++++.||+
T Consensus 314 ~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~~v~~l~g~iYa 385 (571)
T KOG4441|consen 314 SSLAPMPSPRCRVGVAVL---NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMN--TKRSDFGVAVLDGKLYA 385 (571)
T ss_pred eecCCCCcccccccEEEE---CCEEEEEccccC---CCcccceEEEecCCCCceeccCCcc--CccccceeEEECCEEEE
Confidence 366789999999999999 899999999632 2346799999999999999998875 89999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+||.+.. ..++.+.+||+.+++|+.+.+ ++.+|++|++++++++||++||..+..+ +++.+.+|||.++
T Consensus 386 vGG~dg~------~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 386 VGGFDGE------KSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPETN 454 (571)
T ss_pred Eeccccc------cccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCCCC
Confidence 9999843 357899999999999999988 8889999999999999999999877543 7999999999999
Q ss_pred ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCcee
Q 006473 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (643)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g 299 (643)
+|+.++++ +.+|.+++++++++.||++||+++. .....+.+|||.+++|+.+..+ +.+|.+
T Consensus 455 ~W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~W~~v~~m---~~~rs~ 515 (571)
T KOG4441|consen 455 TWTLIAPM-----NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQWTMVAPM---TSPRSA 515 (571)
T ss_pred ceeecCCc-----ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCceeEcccC---cccccc
Confidence 99999999 8999999999999999999999874 4556699999999999999765 679999
Q ss_pred eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 300 ~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
++++++++++|++||..+ ..+++.+.+||+.+++|+.+..
T Consensus 516 ~g~~~~~~~ly~vGG~~~---------~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 516 VGVVVLGGKLYAVGGFDG---------NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccEEEECCEEEEEecccC---------ccccceeEEcCCCCCceeeCCC
Confidence 999999999999999765 5678999999999999999887
No 15
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.9e-35 Score=306.39 Aligned_cols=320 Identities=26% Similarity=0.461 Sum_probs=258.9
Q ss_pred ceeeEEeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEe-cCCCCCCCceeeEEE
Q 006473 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPPRSAHQAV 131 (643)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l-~s~~~P~pRs~ha~~ 131 (643)
+|+.+.- ...+.|.||.+|-++++ ..-|+||||- |.. ....+++||..+++|..- ..+..|++...|.++
T Consensus 18 rWrrV~~-~tGPvPrpRHGHRAVai---kELiviFGGG--NEG---iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfv 88 (830)
T KOG4152|consen 18 RWRRVQQ-STGPVPRPRHGHRAVAI---KELIVIFGGG--NEG---IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFV 88 (830)
T ss_pred ceEEEec-ccCCCCCccccchheee---eeeEEEecCC--ccc---chhhhhhhccccceeecchhcCCCCCchhhcceE
Confidence 4554443 56788999999999999 7889999992 222 678999999999999843 245678899999999
Q ss_pred EECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-----CCCCCceeEEEEECCEEEEEeeeecCCC---
Q 006473 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----CPSPRSGHRMVLYKHKIIVFGGFYDTLR--- 203 (643)
Q Consensus 132 ~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----~P~~Rs~h~~~~~~~~lyvfGG~~~~~~--- 203 (643)
..+.+||+|||+.... .+.||+|.+-...-.|.++.+.. .|.||-||+..+++++.|+|||..+...
T Consensus 89 cdGtrilvFGGMvEYG-----kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpk 163 (830)
T KOG4152|consen 89 CDGTRILVFGGMVEYG-----KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPK 163 (830)
T ss_pred ecCceEEEEccEeeec-----cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcc
Confidence 9999999999986543 36789888877777888887643 2889999999999999999999864332
Q ss_pred --ceeeeccEEEEEcCCC----ceEEeccCCCCCCCCCccceeEEEe------CCEEEEEcCCCCCCCCccCCCCCCcee
Q 006473 204 --EVRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (643)
Q Consensus 204 --~~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~R~~~s~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~ 271 (643)
-.+|+||+|++.+.-. .|...-.. +..|.+|..|+++++ ..++|||||.++ ..+
T Consensus 164 nNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G------------~RL 229 (830)
T KOG4152|consen 164 NNVPRYLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG------------CRL 229 (830)
T ss_pred cccchhhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEccccc------------ccc
Confidence 2459999999998743 38766544 677999999999998 458999999986 578
Q ss_pred eeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccc-----ccCccccccccCCcEEEEECCCCcEEEe
Q 006473 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM-----EMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 272 ~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~-----~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
.|+|.+|+.+.+|.+....|.+|.||+-|+++++++++|||||.... ....+.-+-.+.+.+-++|+++..|..|
T Consensus 230 gDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 230 GDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred cceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 99999999999999999999999999999999999999999998542 2222223345678899999999999999
Q ss_pred EecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeee
Q 006473 347 ELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAK 426 (643)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (643)
-... .+|
T Consensus 310 ~~d~------------------------------------~ed------------------------------------- 316 (830)
T KOG4152|consen 310 LMDT------------------------------------LED------------------------------------- 316 (830)
T ss_pred eecc------------------------------------ccc-------------------------------------
Confidence 8721 000
Q ss_pred cCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEe---ecCeEEeecceeccccCCcc
Q 006473 427 SGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMME---INDQEITLDDLYSLNLSKLD 494 (643)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e---~g~~e~tl~D~~~ldl~k~d 494 (643)
.-+|.+|..||.+.++..|||+-|... .-+.++++-|||-||..+..
T Consensus 317 ---------------------~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 317 ---------------------NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred ---------------------cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 005999999999999999999999642 24667999999999998755
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=8.5e-35 Score=281.23 Aligned_cols=273 Identities=25% Similarity=0.453 Sum_probs=230.4
Q ss_pred cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCC-----------CCCCC
Q 006473 112 EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----------CPSPR 180 (643)
Q Consensus 112 ~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-----------~P~~R 180 (643)
.|..--.+. +.|.+|++++++..||-|||+.+...-. ..---||.+||..+-.|+++++.- .|..|
T Consensus 3 ~WTVHLeGG--PrRVNHAavaVG~riYSFGGYCsGedy~-~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLEGG--PRRVNHAAVAVGSRIYSFGGYCSGEDYD-AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEecCC--cccccceeeeecceEEecCCcccccccc-cCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 466433333 5799999999999999999987654321 112247999999999999998721 27789
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
+||+.+.+++++||.||.++... ..|.++.||+.+++|..+... +..|.+|-||++|++++.+||||||...
T Consensus 80 YGHtvV~y~d~~yvWGGRND~eg---aCN~Ly~fDp~t~~W~~p~v~--G~vPgaRDGHsAcV~gn~MyiFGGye~~--- 151 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEG---ACNLLYEFDPETNVWKKPEVE--GFVPGARDGHSACVWGNQMYIFGGYEED--- 151 (392)
T ss_pred cCceEEEEcceEEEEcCccCccc---ccceeeeecccccccccccee--eecCCccCCceeeEECcEEEEecChHHH---
Confidence 99999999999999999987533 689999999999999988776 6679999999999999999999999876
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
...+.+|++.||..|.+|..+...|.||.-|-.|+++++++++|||||..+....-+++...+.+.|-.+|+.|
T Consensus 152 ------a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 152 ------AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred ------HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccc
Confidence 24788999999999999999999999999999999999999999999998865555566678889999999999
Q ss_pred CcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecC
Q 006473 341 HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDD 420 (643)
Q Consensus 341 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (643)
..|...+..
T Consensus 226 ~aW~r~p~~----------------------------------------------------------------------- 234 (392)
T KOG4693|consen 226 GAWTRTPEN----------------------------------------------------------------------- 234 (392)
T ss_pred cccccCCCC-----------------------------------------------------------------------
Confidence 999876441
Q ss_pred ceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEec
Q 006473 421 GVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCII 500 (643)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~ 500 (643)
.++|..|..|++.|.++.||||||+...= ..-++|||+||..+ -.|+.|.
T Consensus 235 ---------------------------~~~P~GRRSHS~fvYng~~Y~FGGYng~l--n~HfndLy~FdP~t-~~W~~I~ 284 (392)
T KOG4693|consen 235 ---------------------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTL--NVHFNDLYCFDPKT-SMWSVIS 284 (392)
T ss_pred ---------------------------CcCCCcccccceEEEcceEEEecccchhh--hhhhcceeeccccc-chheeee
Confidence 12699999999999999999999998443 34589999999988 8999997
Q ss_pred cC
Q 006473 501 PA 502 (643)
Q Consensus 501 ~~ 502 (643)
..
T Consensus 285 ~~ 286 (392)
T KOG4693|consen 285 VR 286 (392)
T ss_pred cc
Confidence 65
No 17
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=8.3e-34 Score=314.11 Aligned_cols=256 Identities=33% Similarity=0.586 Sum_probs=223.4
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEec-CCCCCCCceeeEEEEECCEEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYI 139 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~P~pRs~ha~~~~~~~iyv 139 (643)
.....|.+|.+|+++.+ ++++|||||...+..... .+||+||..+..|.... .+..|.+|++|++++++++||+
T Consensus 53 ~~~~~p~~R~~hs~~~~---~~~~~vfGG~~~~~~~~~--~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~l 127 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLI---GNKLYVFGGYGSGDRLTD--LDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYL 127 (482)
T ss_pred cCCCCcchhhccceeEE---CCEEEEECCCCCCCcccc--ceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEE
Confidence 34568999999999999 899999999743322211 16999999999999654 4557889999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
|||.... ..++++++.||+.|++|..+.+.+. |++|.+|++++++++||||||...... ++|++|+||+.+
T Consensus 128 fGG~~~~-----~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 128 FGGTDKK-----YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHIYDLET 199 (482)
T ss_pred EccccCC-----CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeeeecccc
Confidence 9998762 2358999999999999999988776 999999999999999999999876543 799999999999
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCce
Q 006473 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (643)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~ 298 (643)
.+|.++... +..|.||++|+++++++++|||||.+.. ..+++|+|+||+.+..|.++...+..|.+|+
T Consensus 200 ~~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~ 267 (482)
T KOG0379|consen 200 STWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG----------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRS 267 (482)
T ss_pred ccceecccC--CCCCCCCCCceEEEECCeEEEEeccccC----------CceecceEeeecccceeeeccccCCCCCCcc
Confidence 999999887 6679999999999999999999999832 4899999999999999999998899999999
Q ss_pred eeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 299 g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+|++++.+..++||||..... ...+.++|.||+.+..|..+..
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~-------~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPK-------QEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeeEEECCEEEEEcCCcccc-------cccccccccccccccceeeeec
Confidence 999999999999999987531 1258899999999999999987
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=319.35 Aligned_cols=260 Identities=19% Similarity=0.289 Sum_probs=216.9
Q ss_pred eccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
+..+.+|++..++|..++.. | .+..|+++++++.|||+||..... ...+++|+||+.+++|..++. +|.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~--~~~~ 332 (534)
T PHA03098 263 TYNYITNYSPLSEINTIIDI--H-YVYCFGSVVLNNVIYFIGGMNKNN-----LSVNSVVSYDTKTKSWNKVPE--LIYP 332 (534)
T ss_pred hceeeecchhhhhcccccCc--c-ccccceEEEECCEEEEECCCcCCC-----CeeccEEEEeCCCCeeeECCC--CCcc
Confidence 34556788889999987542 2 345678889999999999985432 246799999999999999877 7899
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
|.+|++++++++||++||... ...++++++||+.+++|+.++++ |.+|++|+++.++++|||+||....
T Consensus 333 R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~l-----p~~r~~~~~~~~~~~iYv~GG~~~~-- 401 (534)
T PHA03098 333 RKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPGESKWREEPPL-----IFPRYNPCVVNVNNLIYVIGGISKN-- 401 (534)
T ss_pred cccceEEEECCEEEEEeCCCC----CEecceEEEEcCCCCceeeCCCc-----CcCCccceEEEECCEEEEECCcCCC--
Confidence 999999999999999999863 23578999999999999999887 8899999999999999999997543
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
...++++++||+.+++|+.+.++ |.+|.+|++++++++|||+||.+.... ...++.+++||+.
T Consensus 402 --------~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~ 464 (534)
T PHA03098 402 --------DELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDN------IKVYNIVESYNPV 464 (534)
T ss_pred --------CcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCC------CcccceEEEecCC
Confidence 23478899999999999998754 788999999999999999999864221 1235679999999
Q ss_pred CCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeec
Q 006473 340 NHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVD 419 (643)
Q Consensus 340 t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (643)
+++|..++.
T Consensus 465 ~~~W~~~~~----------------------------------------------------------------------- 473 (534)
T PHA03098 465 TNKWTELSS----------------------------------------------------------------------- 473 (534)
T ss_pred CCceeeCCC-----------------------------------------------------------------------
Confidence 999998764
Q ss_pred CceeeeecCCCCCCccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006473 420 DGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (643)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i 499 (643)
+|.||.++++++.++.|||+||.... ..+++++.||+.+ +.|+.+
T Consensus 474 ------------------------------~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~-~~W~~~ 518 (534)
T PHA03098 474 ------------------------------LNFPRINASLCIFNNKIYVVGGDKYE----YYINEIEVYDDKT-NTWTLF 518 (534)
T ss_pred ------------------------------CCcccccceEEEECCEEEEEcCCcCC----cccceeEEEeCCC-CEEEec
Confidence 68899999999999999999998532 2378999999998 999988
Q ss_pred ccCC
Q 006473 500 IPAS 503 (643)
Q Consensus 500 ~~~~ 503 (643)
...+
T Consensus 519 ~~~p 522 (534)
T PHA03098 519 CKFP 522 (534)
T ss_pred CCCc
Confidence 6533
No 19
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=310.74 Aligned_cols=258 Identities=31% Similarity=0.541 Sum_probs=224.4
Q ss_pred CCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEEECCEEEEEe
Q 006473 118 SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFG 196 (643)
Q Consensus 118 s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfG 196 (643)
....|.+|++|+++.+++++|||||........ .+ ++|+||..+..|......+. |.+|++|++++++++||+||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~---~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLT---DL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccc---cc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 345689999999999999999999987665431 11 69999999999999887765 89999999999999999999
Q ss_pred eeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEE
Q 006473 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (643)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (643)
|.... ..++++|+.||+.+.+|..+.+. +..|.+|.+|++++++++||||||.... +..++++|+
T Consensus 130 G~~~~---~~~~~~l~~~d~~t~~W~~l~~~--~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKK---YRNLNELHSLDLSTRTWSLLSPT--GDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLNDLHI 194 (482)
T ss_pred cccCC---CCChhheEeccCCCCcEEEecCc--CCCCCCcccceEEEECCEEEEECCccCc----------ccceeeeee
Confidence 98763 23589999999999999999887 4479999999999999999999999876 238999999
Q ss_pred EeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchh
Q 006473 277 LDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKD 356 (643)
Q Consensus 277 yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~ 356 (643)
||+.+.+|.++...|..|.||.+|+|+++++++|||||.+. ...+++|+|+||+.+..|..+...+.
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~--------~~~~l~D~~~ldl~~~~W~~~~~~g~----- 261 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD--------GDVYLNDVHILDLSTWEWKLLPTGGD----- 261 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc--------CCceecceEeeecccceeeeccccCC-----
Confidence 99999999999999999999999999999999999999872 25689999999999999995554210
Q ss_pred hhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccc
Q 006473 357 KLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKK 436 (643)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (643)
T Consensus 262 -------------------------------------------------------------------------------- 261 (482)
T KOG0379|consen 262 -------------------------------------------------------------------------------- 261 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEeccCC
Q 006473 437 KSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (643)
Q Consensus 437 ~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i~~~~ 503 (643)
.|.||+.|++++.+++++|+||.... ....++|+|.|++.+ ..|..+....
T Consensus 262 -------------~p~~R~~h~~~~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~-~~w~~~~~~~ 312 (482)
T KOG0379|consen 262 -------------LPSPRSGHSLTVSGDHLLLFGGGTDP--KQEPLGDLYGLDLET-LVWSKVESVG 312 (482)
T ss_pred -------------CCCCcceeeeEEECCEEEEEcCCccc--ccccccccccccccc-cceeeeeccc
Confidence 59999999999999999999998643 112699999999997 9999998766
No 20
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=310.40 Aligned_cols=238 Identities=18% Similarity=0.308 Sum_probs=200.4
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~ 148 (643)
+..|+++++ ++.||++||.... ....+++++||+.+++|..++++ |.+|.+|++++++++|||+||....
T Consensus 285 ~~~~~~~~~---~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~--~~~R~~~~~~~~~~~lyv~GG~~~~-- 354 (534)
T PHA03098 285 VYCFGSVVL---NNVIYFIGGMNKN---NLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIYVIGGIYNS-- 354 (534)
T ss_pred cccceEEEE---CCEEEEECCCcCC---CCeeccEEEEeCCCCeeeECCCC--CcccccceEEEECCEEEEEeCCCCC--
Confidence 445677777 8999999996322 23568999999999999988764 5789999999999999999998632
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..++++++||+.+++|+.+++ +|.+|++|++++++++||++||...... .++++++||+.+++|+.+.++
T Consensus 355 ----~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~iYv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~~- 424 (534)
T PHA03098 355 ----ISLNTVESWKPGESKWREEPP--LIFPRYNPCVVNVNNLIYVIGGISKNDE---LLKTVECFSLNTNKWSKGSPL- 424 (534)
T ss_pred ----EecceEEEEcCCCCceeeCCC--cCcCCccceEEEECCEEEEECCcCCCCc---ccceEEEEeCCCCeeeecCCC-
Confidence 246899999999999999887 8899999999999999999999754322 478999999999999999877
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCe
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~ 308 (643)
|.+|++|+++.+++.|||+||..... ....++.+++||+.+++|+.+..+ |.+|.++++++++++
T Consensus 425 ----p~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 425 ----PISHYGGCAIYHDGKIYVIGGISYID--------NIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNK 489 (534)
T ss_pred ----CccccCceEEEECCEEEEECCccCCC--------CCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCE
Confidence 88999999999999999999986530 112356699999999999999754 678999999999999
Q ss_pred EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006473 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (643)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (643)
|||+||... ..+.+++++||+.+++|..+...+
T Consensus 490 iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 490 IYVVGGDKY---------EYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEEEcCCcC---------CcccceeEEEeCCCCEEEecCCCc
Confidence 999999875 234688999999999999987643
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=1.8e-30 Score=275.08 Aligned_cols=237 Identities=19% Similarity=0.297 Sum_probs=182.6
Q ss_pred EeeccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcE----EEecCCCCCCCceeeEEEEE
Q 006473 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW 133 (643)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W----~~l~s~~~P~pRs~ha~~~~ 133 (643)
.|....++|.+|..++++++ ++.||++||.. +. ..++++++||+.+++| ..++ .+|.+|.+|+++++
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~--~~--~~~~~v~~~d~~~~~w~~~~~~~~--~lp~~~~~~~~~~~ 122 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV---ENGIYYIGGSN--SS--ERFSSVYRITLDESKEELICETIG--NLPFTFENGSACYK 122 (323)
T ss_pred eEEEcccCCccccceEEEEE---CCEEEEEcCCC--CC--CCceeEEEEEEcCCceeeeeeEcC--CCCcCccCceEEEE
Confidence 34466778999998888888 89999999952 22 2468999999999998 4444 35788999999999
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+++|||+||.... ..++++|+||+.+++|+.+++ +| .+|.+|++++++++||||||.... ...+++
T Consensus 123 ~~~iYv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~ 189 (323)
T TIGR03548 123 DGTLYVGGGNRNG------KPSNKSYLFNLETQEWFELPD--FPGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGY 189 (323)
T ss_pred CCEEEEEeCcCCC------ccCceEEEEcCCCCCeeECCC--CCCCCCCcceEEEECCEEEEEcCCCCc-----cccceE
Confidence 9999999997432 136899999999999999976 55 479999999999999999997532 246789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEE-EeCCEEEEEcCCCCCCCCc---------------------cCCCCCCce
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTD---------------------KNQSEKGII 270 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~-~~~~~iyv~GG~~~~~~~~---------------------~~~~~~~~~ 270 (643)
+||+.+++|+.+++++....|.++.+++.+ +.+++|||+||++.....+ ........+
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW 269 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence 999999999999887433345555555544 4479999999987430000 000011123
Q ss_pred eeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccc
Q 006473 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM 318 (643)
Q Consensus 271 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~ 318 (643)
.+++++||+.+++|+.+..+ +..+|.++++++++++||++||...+
T Consensus 270 ~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 270 NRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred CceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEeccccC
Confidence 46799999999999999753 23589999999999999999998653
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=286.78 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=181.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.||++||.. + ....+.+++|||.+++|..++++ |.+|..|+++++++.||++||... .+.+++
T Consensus 271 ~~~lyviGG~~--~--~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWM--N--NEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVPANNKLYVVGGLPN---------PTSVER 335 (480)
T ss_pred CCEEEEEcCCC--C--CCcCCeEEEEECCCCEEEECCCC--CchhhcceEEEECCEEEEECCcCC---------CCceEE
Confidence 78999999952 2 22567899999999999999875 589999999999999999999642 256899
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCcccee
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (643)
||+.+++|..+++ +|.+|.+|++++++++||++||.... .+.+.+|||.+++|+.++++ |.+|.+|+
T Consensus 336 ydp~~n~W~~~~~--l~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m-----~~~r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPS--LLKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST-----YYPHYKSC 402 (480)
T ss_pred EECCCCeEEECCC--CCCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC-----CCccccce
Confidence 9999999999987 89999999999999999999997532 36789999999999999888 88999999
Q ss_pred EEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccccccc
Q 006473 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (643)
Q Consensus 241 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~ 320 (643)
+++++++|||+||. +.+|||.+++|+.++++ |.+|.++++++++++||++||.+.
T Consensus 403 ~~~~~~~IYv~GG~-------------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~--- 457 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYR--- 457 (480)
T ss_pred EEEECCEEEEECCc-------------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCC---
Confidence 99999999999984 45899999999999764 779999999999999999999863
Q ss_pred CccccccccCCcEEEEECCCCcEEEeE
Q 006473 321 KGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
....+.+++||+.+++|+...
T Consensus 458 ------~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 458 ------GSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ------CcccceEEEEECCCCeEEecC
Confidence 123578999999999998754
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.3e-29 Score=271.17 Aligned_cols=258 Identities=19% Similarity=0.251 Sum_probs=187.3
Q ss_pred ccCCCC-CCCCceEEEEeccCCCEEEEEcceecCC--CCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEE-EECCE
Q 006473 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SWKNY 136 (643)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyvfGG~~~~g--~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~-~~~~~ 136 (643)
...++| .+|..++++++ +++|||+||..... .....++++|+||+.+++|+.++. ..|.+|.+|+++ +++++
T Consensus 45 ~l~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~ 120 (346)
T TIGR03547 45 KIADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQ 120 (346)
T ss_pred ECCCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCE
Confidence 456677 58999999999 89999999963222 112357899999999999999974 357788888877 68999
Q ss_pred EEEEeCccCCCC----------------------------CCcceecCeEEEEECCCCcEEEeccCCCCC-CCceeEEEE
Q 006473 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (643)
Q Consensus 137 iyvfGG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rs~h~~~~ 187 (643)
|||+||...... ...+..++++++||+.+++|+.+.+ +|. +|.+|++++
T Consensus 121 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~--~p~~~r~~~~~~~ 198 (346)
T TIGR03547 121 AYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE--NPFLGTAGSAIVH 198 (346)
T ss_pred EEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc--CCCCcCCCceEEE
Confidence 999999753100 0000124789999999999999987 775 789999999
Q ss_pred ECCEEEEEeeeecCCCceeeeccEEEEE--cCCCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEcCCCCCCCCcc-
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLYVFD--LDQFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK- 262 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~~yD--~~t~~W~~v~~~~~~~--~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~- 262 (643)
++++||||||...... ....++.|+ +.+++|+.+++++... .+..|.+|++++++++|||+||+........
T Consensus 199 ~~~~iyv~GG~~~~~~---~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~ 275 (346)
T TIGR03547 199 KGNKLLLINGEIKPGL---RTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENY 275 (346)
T ss_pred ECCEEEEEeeeeCCCc---cchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhh
Confidence 9999999999864321 234566665 4677999999884311 1223457778888999999999863200000
Q ss_pred --CCC--C-CCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 263 --NQS--E-KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 263 --~~~--~-~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
+.. . ....+..+.+||+.+++|+.+..+ |.+|.++++++++++|||+||.... ...+++|+.|-
T Consensus 276 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~~~ 344 (346)
T TIGR03547 276 KNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTDVYLLS 344 (346)
T ss_pred hcCCccccCCCCceeEeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCC--------CCEeeeEEEEE
Confidence 000 0 001234688999999999999764 7789999999999999999998652 34578888764
Q ss_pred C
Q 006473 338 L 338 (643)
Q Consensus 338 ~ 338 (643)
+
T Consensus 345 ~ 345 (346)
T TIGR03547 345 W 345 (346)
T ss_pred e
Confidence 3
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=2.3e-29 Score=271.97 Aligned_cols=263 Identities=20% Similarity=0.258 Sum_probs=189.3
Q ss_pred ccCCCC-CCCCceEEEEeccCCCEEEEEcceec-C-CCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEE-ECCE
Q 006473 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-N-GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNY 136 (643)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyvfGG~~~-~-g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~-~~~~ 136 (643)
...++| .+|.+++++++ ++.||||||... . ......++++|+||+.+++|+.++.+ .|.+|.+|++++ .+++
T Consensus 66 ~l~~~p~~~r~~~~~v~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~ 141 (376)
T PRK14131 66 KIAAFPGGPREQAVAAFI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGK 141 (376)
T ss_pred ECCcCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCE
Confidence 334455 58999999988 899999999632 1 11124678999999999999999753 477788888887 7999
Q ss_pred EEEEeCccCCCC----------------------------CCcceecCeEEEEECCCCcEEEeccCCCCC-CCceeEEEE
Q 006473 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (643)
Q Consensus 137 iyvfGG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-~Rs~h~~~~ 187 (643)
||||||...... ...+...+++++||+.+++|+.+.+ +|. +|.+|+++.
T Consensus 142 IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~ 219 (376)
T PRK14131 142 AYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVI 219 (376)
T ss_pred EEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc--CCCCCCCcceEEE
Confidence 999999753100 0001125789999999999999876 664 788999999
Q ss_pred ECCEEEEEeeeecCCCceeeeccEE--EEEcCCCceEEeccCCCCC---CCCCccceeEEEeCCEEEEEcCCCCCCCCcc
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSM---WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~---~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~ 262 (643)
++++||||||...... ....+| .||+.+++|..+.++|... .+..+.++.+++++++|||+||.... ...
T Consensus 220 ~~~~iYv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~--~~~ 294 (376)
T PRK14131 220 KGNKLWLINGEIKPGL---RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP--GAR 294 (376)
T ss_pred ECCEEEEEeeeECCCc---CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCC--CCh
Confidence 9999999999754321 234555 4567889999999883211 01112334456779999999998643 000
Q ss_pred C-----C--CCCC-ceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEE
Q 006473 263 N-----Q--SEKG-IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 263 ~-----~--~~~~-~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
. . ...+ .....+.+||+.+++|+.+.. .|.+|.++++++++++|||+||.... ....++|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~--------~~~~~~v~ 363 (376)
T PRK14131 295 ENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAG--------GKAVSDVT 363 (376)
T ss_pred hhhhcCCcccccCCcceeehheEEecCCcccccCc---CCCCccceEEEEeCCEEEEEcCCCCC--------CcEeeeEE
Confidence 0 0 0000 012346799999999998865 48899999999999999999997542 23578999
Q ss_pred EEECCCCcEEE
Q 006473 335 GFQLDNHRWYP 345 (643)
Q Consensus 335 ~yd~~t~~W~~ 345 (643)
+|++..+.|..
T Consensus 364 ~~~~~~~~~~~ 374 (376)
T PRK14131 364 LLSWDGKKLTV 374 (376)
T ss_pred EEEEcCCEEEE
Confidence 99999887764
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=281.34 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=182.6
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeec
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++..++.||++||.... ...+.+|+||+.+++|..+++ +|.+|..|++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~------~~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~-------~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN------EIHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPN-------PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC------CcCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCC-------CC
Confidence 34579999999997532 246889999999999999988 8999999999999999999999743 25
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
.+++||+.+++|..++++ |.+|.+|++++++++||++||.... .+.+.+|||.+++|+.+++
T Consensus 332 sve~ydp~~n~W~~~~~l-----~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSL-----LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ceEEEECCCCeEEECCCC-----CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCC
Confidence 689999999999999988 8899999999999999999997532 2468899999999999876
Q ss_pred CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCch
Q 006473 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (643)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (643)
+ |.+|.+|++++++++|||+||. +.+||+.+++|..++.
T Consensus 394 m---~~~r~~~~~~~~~~~IYv~GG~-----------------~e~ydp~~~~W~~~~~--------------------- 432 (480)
T PHA02790 394 T---YYPHYKSCALVFGRRLFLVGRN-----------------AEFYCESSNTWTLIDD--------------------- 432 (480)
T ss_pred C---CCccccceEEEECCEEEEECCc-----------------eEEecCCCCcEeEcCC---------------------
Confidence 5 7799999999999999999984 4689999999998875
Q ss_pred hhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCCccccccccccCCCCCc
Q 006473 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (643)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (643)
T Consensus 433 -------------------------------------------------------------------------------- 432 (480)
T PHA02790 433 -------------------------------------------------------------------------------- 432 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006473 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (643)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k~d~w~~i 499 (643)
||.||.+++++++++.|||+||... . ..++.+..||+.+ |.|+-.
T Consensus 433 m~~~r~~~~~~v~~~~IYviGG~~~--~--~~~~~ve~Yd~~~-~~W~~~ 477 (480)
T PHA02790 433 PIYPRDNPELIIVDNKLLLIGGFYR--G--SYIDTIEVYNNRT-YSWNIW 477 (480)
T ss_pred CCCCccccEEEEECCEEEEECCcCC--C--cccceEEEEECCC-CeEEec
Confidence 7999999999999999999999752 1 1367899999998 999754
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.8e-30 Score=265.20 Aligned_cols=216 Identities=27% Similarity=0.574 Sum_probs=184.9
Q ss_pred CcEEEec--CCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-CCCCceeEEEE
Q 006473 111 QEWKVIS--SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVL 187 (643)
Q Consensus 111 ~~W~~l~--s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P~~Rs~h~~~~ 187 (643)
-.|+.+. .++.|.||.+|.++++..-|+||||-+.. ....+..||..+++|......|. |.+...|+.++
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-------chhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 3688775 34568889999999999999999997543 46789999999999998776664 88888999999
Q ss_pred ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC--CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCC
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF--GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~--~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~ 265 (643)
.+.+||+|||+...+ +|.|++|.+......|.++.+.+ .+.+|.||.||++.+++++.|||||.... .+...+
T Consensus 90 dGtrilvFGGMvEYG---kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd--seDpkn 164 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYG---KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND--SEDPKN 164 (830)
T ss_pred cCceEEEEccEeeec---cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc--ccCccc
Confidence 999999999997754 48999999888888899886653 46789999999999999999999998776 444556
Q ss_pred CCCceeeeEEEEeCC----CCeeEEeccCCCCCCCceeeEEEEE------CCeEEEeccccccccCccccccccCCcEEE
Q 006473 266 EKGIIHSDLWSLDPR----TWEWSKVKKIGMPPGPRAGFSMCVH------KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (643)
Q Consensus 266 ~~~~~~~dv~~yd~~----t~~W~~l~~~g~~P~~R~g~s~~~~------~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~ 335 (643)
....+++|+|++++. -..|......|..|.+|-.|+++++ ..++|||||.++ +-+.|||.
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~ 234 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWT 234 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeE
Confidence 677899999999976 3479999888999999999999998 358999999875 55899999
Q ss_pred EECCCCcEEEeEe
Q 006473 336 FQLDNHRWYPLEL 348 (643)
Q Consensus 336 yd~~t~~W~~l~~ 348 (643)
+|+++..|.+...
T Consensus 235 Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 235 LDLDTLTWNKPSL 247 (830)
T ss_pred Eecceeecccccc
Confidence 9999999988877
No 27
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.83 E-value=8.6e-22 Score=205.08 Aligned_cols=264 Identities=22% Similarity=0.360 Sum_probs=191.4
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCC-CCCCceeeEEEEEC--CEEEEE
Q 006473 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWK--NYLYIF 140 (643)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~-~P~pRs~ha~~~~~--~~iyvf 140 (643)
.-|..|.||.++..+. .+.||++|| ++|.. .+.|+|.|+...+.|..+.... .|..|+.|-+|..- .+||+.
T Consensus 256 ~~p~~RgGHQMV~~~~-~~CiYLYGG--WdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ-TECVYLYGG--WDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred cCccccCcceEEEeCC-CcEEEEecC--cccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 5789999999999864 479999999 67754 5789999999999999887554 78999999999984 489999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEeccC----CCCCCCceeEEEEECCE--EEEEeeeecCCCceeeeccEEEE
Q 006473 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKHK--IIVFGGFYDTLREVRYYNDLYVF 214 (643)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~----g~P~~Rs~h~~~~~~~~--lyvfGG~~~~~~~~~~~~dv~~y 214 (643)
|-+..+.....+..-.|+|+||..++.|..+... |.|...+.|.|++...+ ||||||..-... ...+..+|.|
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf 409 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAF 409 (723)
T ss_pred hhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEE
Confidence 9988776666666778999999999999987542 34999999999999776 999999865432 2357789999
Q ss_pred EcCCCceEEeccCCCC-----CCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 215 DLDQFKWQEIKPRFGS-----MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 215 D~~t~~W~~v~~~~~~-----~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
|+....|..+...-.. .....|.||+|-.+ +..+|++||.... .-++-.+.|++....-..+
T Consensus 410 ~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-----------~El~L~f~y~I~~E~~~~~ 478 (723)
T KOG2437|consen 410 NCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-----------TELNLFFSYDIDSEHVDII 478 (723)
T ss_pred ecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-----------eEEeehhcceeccccchhh
Confidence 9999999886543111 11346888988776 8899999998765 4556667776543332222
Q ss_pred cc-----CCCCCCCceeeEEEEE---CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 288 KK-----IGMPPGPRAGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 288 ~~-----~g~~P~~R~g~s~~~~---~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.. ....|++-+ ..-+.. ..+|.+.-|........ .....|.+|+|++.++.|..+..
T Consensus 479 s~~~k~dsS~~pS~~f-~qRs~~dp~~~~i~~~~G~~~~~~~~---e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 479 SDGTKKDSSMVPSTGF-TQRATIDPELNEIHVLSGLSKDKEKR---EENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hccCcCccccCCCcch-hhhcccCCCCcchhhhcccchhccCc---cccccCcEEEEEecccchhhHhh
Confidence 11 111232211 111222 45676666654322211 13457899999999999987764
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=2.5e-17 Score=167.32 Aligned_cols=258 Identities=20% Similarity=0.283 Sum_probs=188.4
Q ss_pred ccCCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEE
Q 006473 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLY 138 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iy 138 (643)
..+..|.+--+.+-..+ ++.+||-=|. . -+..|..|+... .|+.++.-+ -.+|.+..+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~i---g~~~YVGLGs--~------G~afy~ldL~~~~k~W~~~a~Fp-G~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALI---GDTVYVGLGS--A------GTAFYVLDLKKPGKGWTKIADFP-GGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCcccccccccee---cceEEEEecc--C------CccceehhhhcCCCCceEcccCC-CcccccchheeeCCeEE
Confidence 44567777666666666 6789986662 1 246788888764 799998653 36799999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecC----------------
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDT---------------- 201 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~---------------- 201 (643)
||||...+.. .....++++|+||+.+++|.++.+. .|....+|.++.+++ .||++||++..
T Consensus 97 vFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCC-CCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 9999865544 2346899999999999999999874 388888999999987 99999997521
Q ss_pred --------------CCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCC
Q 006473 202 --------------LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 202 --------------~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
.....+...|+.|+|++++|+.+...| -.++++.+++.-++.|.++-|.-..
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p----f~~~aGsa~~~~~n~~~lInGEiKp---------- 240 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP----FYGNAGSAVVIKGNKLTLINGEIKP---------- 240 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc----ccCccCcceeecCCeEEEEcceecC----------
Confidence 111335678999999999999998652 4678886666668889999998765
Q ss_pred CceeeeEEEEeC--CCCeeEEeccCCCCCC----CceeeEEEEECCeEEEeccccccccC----------ccccccccCC
Q 006473 268 GIIHSDLWSLDP--RTWEWSKVKKIGMPPG----PRAGFSMCVHKKRALLFGGVVDMEMK----------GDVIMSLFLN 331 (643)
Q Consensus 268 ~~~~~dv~~yd~--~t~~W~~l~~~g~~P~----~R~g~s~~~~~~~iyvfGG~~~~~~~----------~~~~~~~~~n 331 (643)
+.....+++++. ...+|.++.....++. ..+|+-.-..++.+++.||.+-.+.. .+.+.-.+.+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 455566777775 4568999976532221 22333334457889999987644322 2235556778
Q ss_pred cEEEEECCCCcEEEeEe
Q 006473 332 ELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 332 dl~~yd~~t~~W~~l~~ 348 (643)
+||+|| ++.|..+..
T Consensus 321 ~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 321 EVYIFD--NGSWKIVGE 335 (381)
T ss_pred eEEEEc--CCceeeecc
Confidence 899999 889988775
No 29
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=99.76 E-value=2.7e-19 Score=151.46 Aligned_cols=53 Identities=43% Similarity=0.524 Sum_probs=49.8
Q ss_pred hcCCCCCCCCCCCCCcHHHHHHhhHHHHHHHHhhccc--ccchhhhhhhcccccc
Q 006473 588 NLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ--HTGKVCFHFSFLTFSE 640 (643)
Q Consensus 588 ~~~~~d~~~~p~p~e~~~~f~~rt~~~w~~~~~~~~~--~~~k~~~~~~f~~~~~ 640 (643)
+++++|++|||+||||||+||+||++|||++|+++.+ ++||||||+||.+.++
T Consensus 2 ~~~~~d~~ptP~p~EsLr~Ff~RT~~~W~~~a~~~~~~~~~~KeLrk~aF~lAe~ 56 (96)
T PF13422_consen 2 QPDLDDWLPTPKPFESLRDFFARTSEYWQEWAIESNRDAHRGKELRKDAFDLAEE 56 (96)
T ss_pred CCCCccCCCCCCCCCcHHHHHHHhHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999988 7899999999998654
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=1.2e-14 Score=148.03 Aligned_cols=255 Identities=20% Similarity=0.273 Sum_probs=178.7
Q ss_pred CCCCCCceEEEEeccCCCEEEEEcceecCC-CCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECC-EEEEEeC
Q 006473 65 APSPRSNCSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGG 142 (643)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g-~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~-~iyvfGG 142 (643)
|-.+|.+...+++ +++||+|||..... .....++++|+|||.+++|.++... .|....+|+++.+++ .||++||
T Consensus 79 pG~~rnqa~~a~~---~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 79 PGGARNQAVAAVI---GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGG 154 (381)
T ss_pred CCcccccchheee---CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEcc
Confidence 4468899999998 89999999974333 2356899999999999999999765 467788999999976 9999999
Q ss_pred ccCCC----------------------------CCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEE
Q 006473 143 EFTSP----------------------------NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194 (643)
Q Consensus 143 ~~~~~----------------------------~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyv 194 (643)
.+... ....+.....|+.|++.++.|+.+...+ -.++++++.+.-+|+|.+
T Consensus 155 vn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p-f~~~aGsa~~~~~n~~~l 233 (381)
T COG3055 155 VNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP-FYGNAGSAVVIKGNKLTL 233 (381)
T ss_pred ccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc-ccCccCcceeecCCeEEE
Confidence 63220 1112345778999999999999886422 456777666656888999
Q ss_pred EeeeecCCCceeeeccEEEEEcC--CCceEEeccCCCCCC--CCCccceeEEEeCCEEEEEcCCCCCCCC--------cc
Q 006473 195 FGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSMW--PSPRSGFQFFVYQDEVFLYGGYSKEVST--------DK 262 (643)
Q Consensus 195 fGG~~~~~~~~~~~~dv~~yD~~--t~~W~~v~~~~~~~~--P~~R~~~s~~~~~~~iyv~GG~~~~~~~--------~~ 262 (643)
+-|.-..+- ....+++++.. .-+|..+...|.... +....|+-.-..++.++|.||....-.. -.
T Consensus 234 InGEiKpGL---Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~A 310 (381)
T COG3055 234 INGEIKPGL---RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYA 310 (381)
T ss_pred EcceecCCc---cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccc
Confidence 988754432 25566777665 567999877643111 1333344444458899999997543000 01
Q ss_pred CCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.....-..+++||+|| .+.|..+.. .|.++++...+..++.+|++||.+... .....++.+-+..
T Consensus 311 H~Gl~K~w~~~Vy~~d--~g~Wk~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~G--------ka~~~v~~l~~~g 375 (381)
T COG3055 311 HEGLSKSWNSEVYIFD--NGSWKIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGG--------KATTRVYSLSWDG 375 (381)
T ss_pred ccchhhhhhceEEEEc--CCceeeecc---cCCCccceEEEecCCcEEEEccccCCC--------eeeeeEEEEEEcC
Confidence 1223345788999999 899999854 577888888888899999999987643 3345555554443
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.62 E-value=3.8e-16 Score=163.34 Aligned_cols=167 Identities=23% Similarity=0.468 Sum_probs=131.4
Q ss_pred CCcEEEeccCC--------CCCCCceeEEEEECC--EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 165 TNQWEQLNLKG--------CPSPRSGHRMVLYKH--KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 165 t~~W~~~~~~g--------~P~~Rs~h~~~~~~~--~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
+-.|++++... .|.-|+||.|+...+ +||++||+++.. -+.|+|.|....+.|+.+..- +..|-
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~----~l~DFW~Y~v~e~~W~~iN~~--t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ----DLADFWAYSVKENQWTCINRD--TEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch----hHHHHHhhcCCcceeEEeecC--CCCCc
Confidence 45798887644 289999999999854 999999998754 389999999999999999766 44699
Q ss_pred CccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCC---CCCCCceeeEEEEECCe-
Q 006473 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGPRAGFSMCVHKKR- 308 (643)
Q Consensus 235 ~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---~~P~~R~g~s~~~~~~~- 308 (643)
.|+.|-|++. ..++|+.|-|-.. +.. .......|+|+||+.++.|..+.-.. --|...+-|.|++.+.+
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~s--S~r---~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~ 386 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDS--SVR---NSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKH 386 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhcccc--ccc---cccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcc
Confidence 9999999998 4599999988654 111 11245679999999999999985321 13677889999999766
Q ss_pred -EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 309 -ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 309 -iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
||||||+.-... ...+.-||+||+....|..+..
T Consensus 387 ~iyVfGGr~~~~~------e~~f~GLYaf~~~~~~w~~l~e 421 (723)
T KOG2437|consen 387 MIYVFGGRILTCN------EPQFSGLYAFNCQCQTWKLLRE 421 (723)
T ss_pred eEEEecCeeccCC------CccccceEEEecCCccHHHHHH
Confidence 999999864321 2346789999999999987765
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.98 E-value=1e-09 Score=82.90 Aligned_cols=50 Identities=42% Similarity=0.591 Sum_probs=44.5
Q ss_pred CceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 124 pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
||.+|++|+++++||||||.... ...++++|+||+.+++|+.+++ +|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 69999999999999999998764 2357999999999999999987 88877
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.95 E-value=1.3e-09 Score=82.37 Aligned_cols=50 Identities=40% Similarity=0.833 Sum_probs=44.6
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
||.+|++++++++||||||.... ..+++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m-----p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM-----PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC-----CCCC
Confidence 68999999999999999998764 34789999999999999999988 6665
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.82 E-value=9.8e-09 Score=77.13 Aligned_cols=49 Identities=39% Similarity=0.786 Sum_probs=41.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~ 188 (643)
+++||||||...... ..++++|+||+.+++|+++.. +|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~----~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG----TRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC----CEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence 578999999874222 368999999999999999955 7999999999874
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.79 E-value=1.4e-08 Score=76.35 Aligned_cols=49 Identities=29% Similarity=0.579 Sum_probs=41.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW 133 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~ 133 (643)
+++||||||... .....+|++|+||+.+++|+++ +..|.||++|+++++
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~--~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRI--GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEEC--CCCCCCccceEEEEC
Confidence 478999999642 3345889999999999999999 457899999999874
No 36
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.76 E-value=8.5e-07 Score=88.39 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=117.1
Q ss_pred ccCCCCCCCCceEEEE-eccCC--CEEEEEcceecCCCCceeeccEEEEECCCCc-EEEec--------CCCCCCCceee
Q 006473 61 DNVPAPSPRSNCSLNI-NPLKE--TELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVIS--------SPNSPPPRSAH 128 (643)
Q Consensus 61 ~~~~~P~~R~~~s~~~-~~~~~--~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~-W~~l~--------s~~~P~pRs~h 128 (643)
..+-.|+.|..+.+.+ .|..+ ...+|.||...|+. ..+.+|+....... =++++ .+..|.+|++|
T Consensus 15 dSCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE---lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGH 91 (337)
T PF03089_consen 15 DSCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE---LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGH 91 (337)
T ss_pred CcccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc---cccceEEEEeecCCCCceeEEEEecceecCCCCcccccc
Confidence 3456788887766665 33222 34667788766654 67889988877653 11111 35679999999
Q ss_pred EEEEE----CCEEEEEeCccCCCCCC--------cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEe
Q 006473 129 QAVSW----KNYLYIFGGEFTSPNQE--------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFG 196 (643)
Q Consensus 129 a~~~~----~~~iyvfGG~~~~~~~~--------~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfG 196 (643)
++.++ ...+++|||...-+... ...+...|+.+|+.-+.++.-..+.+....+.|.+..-++.+|++|
T Consensus 92 t~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilG 171 (337)
T PF03089_consen 92 TINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILG 171 (337)
T ss_pred eEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEc
Confidence 99888 34689999975332211 1234557899999988887665544567888999999999999999
Q ss_pred eeecCCCceeeeccEEEEEcC---CCceEEeccCCCCCCCCCccceeEEEe---CCEEEEEcCCCCC
Q 006473 197 GFYDTLREVRYYNDLYVFDLD---QFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKE 257 (643)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~---t~~W~~v~~~~~~~~P~~R~~~s~~~~---~~~iyv~GG~~~~ 257 (643)
|..-... .....++++... -.-+-..... +...+-.++.+. .+..+|+|||...
T Consensus 172 GHsl~sd--~Rpp~l~rlkVdLllGSP~vsC~vl-----~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 172 GHSLESD--SRPPRLYRLKVDLLLGSPAVSCTVL-----QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred cEEccCC--CCCCcEEEEEEeecCCCceeEEEEC-----CCCceEeeeeEeecCCCceEEEeccccc
Confidence 9864322 123445555322 1112222222 223333333332 6789999999876
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.71 E-value=3.2e-08 Score=73.46 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=41.3
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
||++|++++++++||||||+... ..+++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 69999999999999999999873 34799999999999999999887
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.68 E-value=3.5e-08 Score=74.08 Aligned_cols=48 Identities=42% Similarity=0.752 Sum_probs=41.2
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
||++|++++++++||||||+ .......+.+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 1222345799999999999999999876
No 39
>PLN02772 guanylate kinase
Probab=98.68 E-value=1e-07 Score=101.40 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=75.8
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
+.++.+++++.+++++||+||.+.. +...+.+|+||+.+.+|......|.+|.+|.||++|++ +++|+|
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~----------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEG----------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCC----------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 5688999999999999999997765 34678999999999999999999999999999999999 699999
Q ss_pred eccccccccCccccccccCCcEEEEECCCC
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+++.... -.++|.+.+.|-
T Consensus 92 ~~~~~~~-----------~~~~w~l~~~t~ 110 (398)
T PLN02772 92 IKKGSAP-----------DDSIWFLEVDTP 110 (398)
T ss_pred EeCCCCC-----------ccceEEEEcCCH
Confidence 9987542 356888877663
No 40
>PLN02772 guanylate kinase
Probab=98.67 E-value=9.3e-08 Score=101.68 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=75.6
Q ss_pred CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCC
Q 006473 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (643)
Q Consensus 177 P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~ 255 (643)
+.++.+|+++.+++++|||||.++.. ...+.||+||+.+.+|..+... +..|.||.||+++++ +++|+|+++.+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56889999999999999999987743 2579999999999999998877 778999999999999 78999999876
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
.. .+++|++.+.|.
T Consensus 97 ~~-------------~~~~w~l~~~t~ 110 (398)
T PLN02772 97 AP-------------DDSIWFLEVDTP 110 (398)
T ss_pred CC-------------ccceEEEEcCCH
Confidence 43 378999987664
No 41
>PF13854 Kelch_5: Kelch motif
Probab=98.66 E-value=1.6e-08 Score=73.35 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=35.5
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006473 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (643)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~k 492 (643)
+|.||.+|++++.++.||||||... .....++|||.|||.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 4999999999999999999999974 3345699999999975
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.65 E-value=4.5e-08 Score=73.47 Aligned_cols=46 Identities=35% Similarity=0.646 Sum_probs=31.4
Q ss_pred CCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 179 ~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
||++|+++.+ +++||||||..... .+++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence 6999999999 58999999998753 4799999999999999999665
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.60 E-value=7.7e-08 Score=72.17 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecC
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS 118 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s 118 (643)
||.+|+++.+. ++.||||||...++ ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~--~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIG--DNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE---TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEe--CCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCC
Confidence 79999999985 58999999986554 489999999999999999944
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.60 E-value=7.7e-08 Score=71.39 Aligned_cols=45 Identities=36% Similarity=0.522 Sum_probs=39.7
Q ss_pred CceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 124 pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
||++|+++++++.|||+||..... ..++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN-----QPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS-----SBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccC-----ceeeeEEEEeCCCCEEEEcCC
Confidence 699999999999999999998722 368999999999999999876
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.55 E-value=1.7e-07 Score=70.39 Aligned_cols=47 Identities=28% Similarity=0.782 Sum_probs=40.6
Q ss_pred CccceeEEEeCCEEEEEcCC-CCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 235 PRSGFQFFVYQDEVFLYGGY-SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
||++|++++++++||||||+ ... .....+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~---------~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDN---------GGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCC---------CCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 111 247889999999999999999865
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.52 E-value=1.9e-07 Score=67.72 Aligned_cols=41 Identities=49% Similarity=0.913 Sum_probs=35.7
Q ss_pred CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 177 P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
|.+|++|++++++++||||||+.. ....+++++|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence 889999999999999999999974 23457999999999764
No 47
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.44 E-value=3.5e-06 Score=84.05 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCCCceeeEEEEE---C---CEEEEEeCccCCCCCCcceecCeEEEEECCCCc--------EEEeccCC-CCCCCceeEE
Q 006473 121 SPPPRSAHQAVSW---K---NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRM 185 (643)
Q Consensus 121 ~P~pRs~ha~~~~---~---~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--------W~~~~~~g-~P~~Rs~h~~ 185 (643)
+|+.|+-..+..- + ...+|.||...+.. ..+.+|++...+.. +.....-| .|.+|+||++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-----lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-----LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-----cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 4566654433331 1 24667788765533 46778888766543 22222212 4999999999
Q ss_pred EEE----CCEEEEEeeeecCCCc---e-------eeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEE
Q 006473 186 VLY----KHKIIVFGGFYDTLRE---V-------RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (643)
Q Consensus 186 ~~~----~~~lyvfGG~~~~~~~---~-------~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~ 251 (643)
.++ +..+++|||....... + .....|+.+|++-+..+.-..+ .+-.+.+.|.++.-++.+|++
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp---El~dG~SFHvslar~D~VYil 170 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP---ELQDGQSFHVSLARNDCVYIL 170 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch---hhcCCeEEEEEEecCceEEEE
Confidence 887 4468999997532211 1 1345788889887776554433 124567777777779999999
Q ss_pred cCCCCC
Q 006473 252 GGYSKE 257 (643)
Q Consensus 252 GG~~~~ 257 (643)
||..-.
T Consensus 171 GGHsl~ 176 (337)
T PF03089_consen 171 GGHSLE 176 (337)
T ss_pred ccEEcc
Confidence 998754
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.24 E-value=0.00025 Score=71.29 Aligned_cols=204 Identities=15% Similarity=0.224 Sum_probs=116.6
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceee--EEEEEC----C-EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVSWK----N-YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~h--a~~~~~----~-~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
..++++||.+++|+.++.+..|...... ....++ . +|+.+...... .....+.+|+..+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC------CCCccEEEEEeCCCCcccccc
Confidence 4689999999999999764322111111 111111 1 34444332110 012468899999999999874
Q ss_pred CCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEc
Q 006473 174 KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (643)
Q Consensus 174 ~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~R~~~s~~~~~~~iyv~G 252 (643)
.. +........+++++.||-+.-..... ....+..||+.+.+|.. ++.+.. . ........++.++++|.++.
T Consensus 88 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~P~~-~-~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SP-PHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPLPCG-N-SDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CC-CCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeecCcc-c-cccccceEEEEECCEEEEEE
Confidence 22 22122223778899999887542211 11269999999999995 554311 0 11122345666789988876
Q ss_pred CCCCCCCCccCCCCCCceeeeEEEEe-CCCCeeEEeccCCCCCCCcee----eEEEEECCeEEEeccccccccCcccccc
Q 006473 253 GYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAG----FSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (643)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~l~~~g~~P~~R~g----~s~~~~~~~iyvfGG~~~~~~~~~~~~~ 327 (643)
..... ..-++|+++ -....|+++-....++.++.. ...+..++.|++..+...
T Consensus 161 ~~~~~------------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---------- 218 (230)
T TIGR01640 161 QKKDT------------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---------- 218 (230)
T ss_pred ecCCC------------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC----------
Confidence 54321 114699986 445679987544322222221 344556788888765210
Q ss_pred ccCCcEEEEECCCC
Q 006473 328 LFLNELYGFQLDNH 341 (643)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (643)
..-+..||+.++
T Consensus 219 --~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 --PFYIFYYNVGEN 230 (230)
T ss_pred --ceEEEEEeccCC
Confidence 113889998875
No 49
>smart00612 Kelch Kelch domain.
Probab=98.16 E-value=2.9e-06 Score=62.38 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=39.7
Q ss_pred EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC
Q 006473 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH 190 (643)
Q Consensus 136 ~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~ 190 (643)
+|||+||.... ..++++++||+.+++|+.+++ +|.+|.+|+++++++
T Consensus 1 ~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG------QRLKSVEVYDPETNKWTPLPS--MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC------ceeeeEEEECCCCCeEccCCC--CCCccccceEEEeCC
Confidence 48999998542 247899999999999999887 899999999988764
No 50
>smart00612 Kelch Kelch domain.
Probab=98.15 E-value=3.4e-06 Score=61.99 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=39.6
Q ss_pred EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECC
Q 006473 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~ 307 (643)
+|||+||+... ..++++++||+.+++|+.+..+ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 48999998653 5688999999999999998764 78999999988764
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.87 E-value=0.00055 Score=69.06 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=91.8
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC----CcEEEeccCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLKGCP 177 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~~~~~g~P 177 (643)
.-..||+.+++++.+....- .=.++|+ ..-++.++++||.... .+.+-.|++.+ ..|...... |-
T Consensus 47 ~s~~yD~~tn~~rpl~v~td-~FCSgg~-~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD-TFCSGGA-FLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQ 115 (243)
T ss_pred EEEEEecCCCcEEeccCCCC-CcccCcC-CCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-cc
Confidence 34579999999998764320 1122222 2227899999998653 24466677654 579877643 78
Q ss_pred CCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCC--C---ceEEeccCCCCCCCCCccceeEEEeCCEEEEE
Q 006473 178 SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--F---KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (643)
Q Consensus 178 ~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t--~---~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~ 251 (643)
.+|.+.+++.+ +++++|+||... ...+.|.... . .|..+.... ...+..-+=+..+.-+++||++
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC--------CcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEE
Confidence 89999988887 889999999752 1222222211 1 121121110 1123333434444559999999
Q ss_pred cCCCCCCCCccCCCCCCceeeeEEEEeCCCCee-EEeccC
Q 006473 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKKI 290 (643)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~ 290 (643)
+... .++||+.++++ ..++.+
T Consensus 187 an~~------------------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 187 ANRG------------------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EcCC------------------cEEEeCCCCeEEeeCCCC
Confidence 9864 34889999977 455543
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.64 E-value=0.0016 Score=65.82 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=94.3
Q ss_pred cCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC----CceEEeccCCCC
Q 006473 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKPRFGS 230 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~~~~~ 230 (643)
...--.||+.+++++.+.... -.-.++| +..-++.++++||..+. ...+-.|++.. ..|......
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-d~FCSgg-~~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~--- 113 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-DTFCSGG-AFLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND--- 113 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-CCcccCc-CCCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc---
Confidence 344568999999999886521 2222333 23348899999998663 34566677654 568877542
Q ss_pred CCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC------CCeeEEeccCC-CCCCCceeeEE
Q 006473 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------TWEWSKVKKIG-MPPGPRAGFSM 302 (643)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------t~~W~~l~~~g-~~P~~R~g~s~ 302 (643)
+-.+|...++..+ +++++|+||.... .+.|-|. ...|..+.... ..|..-+-+..
T Consensus 114 -m~~~RWYpT~~~L~DG~vlIvGG~~~~----------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ 176 (243)
T PF07250_consen 114 -MQSGRWYPTATTLPDGRVLIVGGSNNP----------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVH 176 (243)
T ss_pred -ccCCCccccceECCCCCEEEEeCcCCC----------------cccccCCccCCCCceeeecchhhhccCccccCceEE
Confidence 2788999999888 8999999998633 2222222 12232222110 11222333444
Q ss_pred EEECCeEEEeccccccccCccccccccCCcEEEEECCCCcE-EEeEec
Q 006473 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW-YPLELR 349 (643)
Q Consensus 303 ~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W-~~l~~~ 349 (643)
..-+|+||+|+.. .-.+||..++++ ..++..
T Consensus 177 llPdG~lFi~an~----------------~s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 177 LLPDGNLFIFANR----------------GSIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EcCCCCEEEEEcC----------------CcEEEeCCCCeEEeeCCCC
Confidence 4458999999974 357889999977 566653
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.46 E-value=0.049 Score=59.41 Aligned_cols=187 Identities=15% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+.+. ...++++|..++ .|+.-... + ...+-++.++.||+..+ ...+
T Consensus 120 ~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~----~-~~ssP~v~~~~v~v~~~------------~g~l 172 (394)
T PRK11138 120 GGKVYIGSE----------KGQVYALNAEDGEVAWQTKVAG----E-ALSRPVVSDGLVLVHTS------------NGML 172 (394)
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCCcccccCCC----c-eecCCEEECCEEEEECC------------CCEE
Confidence 677776433 247899999876 58754321 1 12223445788887543 1458
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (643)
+.||+.+++ |+.-...+....+...+-++.++.+|+..+ ...++.+|+.+.+ |+.....+.+....
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~----------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD----------NGRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC----------CCEEEEEEccCChhhheeccccCCCccch
Confidence 999998875 876432111111222233455676666332 2357788887654 86532221110000
Q ss_pred Cc---cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeE
Q 006473 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (643)
Q Consensus 235 ~R---~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~i 309 (643)
.| ...+.++.++.+|+.+. .+ .++++|+.+. .|+.-. +. . ..+++.+++|
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~-~g----------------~l~ald~~tG~~~W~~~~--~~---~---~~~~~~~~~v 297 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAY-NG----------------NLVALDLRSGQIVWKREY--GS---V---NDFAVDGGRI 297 (394)
T ss_pred hcccccCCCcEEECCEEEEEEc-CC----------------eEEEEECCCCCEEEeecC--CC---c---cCcEEECCEE
Confidence 01 12234456888887553 22 3889998765 587632 11 1 1346678999
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCC--cEE
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~ 344 (643)
|+.... ..|+++|+.+. .|.
T Consensus 298 y~~~~~---------------g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 298 YLVDQN---------------DRVYALDTRGGVELWS 319 (394)
T ss_pred EEEcCC---------------CeEEEEECCCCcEEEc
Confidence 987532 35999999876 364
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.46 E-value=0.029 Score=61.26 Aligned_cols=193 Identities=12% Similarity=0.070 Sum_probs=107.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC------CCCCceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~------~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+.+.. ..+++||..++ .|+.-.... .+.++.....++.++.||+.+.
T Consensus 69 ~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------- 128 (394)
T PRK11138 69 YNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------- 128 (394)
T ss_pred CCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------
Confidence 7889887652 37899998866 487532210 0011223334556888887432
Q ss_pred eecCeEEEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCC
Q 006473 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRF 228 (643)
Q Consensus 153 ~~~~dv~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~ 228 (643)
...++.||..++ .|+.-.. .. ...+-++.++.||+..+ ...++.||+.+.+ |+.-...+
T Consensus 129 --~g~l~ald~~tG~~~W~~~~~----~~-~~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 129 --KGQVYALNAEDGEVAWQTKVA----GE-ALSRPVVSDGLVLVHTS----------NGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred --CCEEEEEECCCCCCcccccCC----Cc-eecCCEEECCEEEEECC----------CCEEEEEEccCCCEeeeecCCCC
Confidence 146899998876 4875432 11 11223456788887433 2468999998765 87654321
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccC--CCCCCCc---eeeE
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFS 301 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~--g~~P~~R---~g~s 301 (643)
. ...+...+-++.++.+|+..+ ++ .++.+|+.+. .|+..... +.....| ...+
T Consensus 192 ~---~~~~~~~sP~v~~~~v~~~~~-~g----------------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 192 S---LTLRGESAPATAFGGAIVGGD-NG----------------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred c---ccccCCCCCEEECCEEEEEcC-CC----------------EEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 1 111222233445666666433 22 2677777654 57653211 0000001 1234
Q ss_pred EEEECCeEEEeccccccccCccccccccCCcEEEEECCCC--cEEE
Q 006473 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (643)
Q Consensus 302 ~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (643)
-++.++.+|+.+.. ..++++|+.+. .|..
T Consensus 252 P~v~~~~vy~~~~~---------------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAYN---------------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEcC---------------CeEEEEECCCCCEEEee
Confidence 45668888876531 35999999886 4764
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.42 E-value=0.16 Score=50.61 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=108.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+..+ .+.|++||+.+++ |+.-.. .+ .....+..++.||+..+. +.+
T Consensus 36 ~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~~----~~-~~~~~~~~~~~v~v~~~~------------~~l 88 (238)
T PF13360_consen 36 GGRVYVASG----------DGNLYALDAKTGKVLWRFDLP----GP-ISGAPVVDGGRVYVGTSD------------GSL 88 (238)
T ss_dssp TTEEEEEET----------TSEEEEEETTTSEEEEEEECS----SC-GGSGEEEETTEEEEEETT------------SEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEeecc----cc-ccceeeecccccccccce------------eee
Confidence 688888743 2589999998874 765431 11 122246668999888632 368
Q ss_pred EEEECCCC--cEEE-eccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCC
Q 006473 159 WMLDLKTN--QWEQ-LNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP 233 (643)
Q Consensus 159 ~~yD~~t~--~W~~-~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P 233 (643)
+.||..++ .|+. ....+....+.....++.++.+|+... ...++.+|+.+++ |......+....+
T Consensus 89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred EecccCCcceeeeeccccccccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 99998777 4984 433111112344455556777777653 3568999988765 7765543111101
Q ss_pred C---CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCe
Q 006473 234 S---PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKR 308 (643)
Q Consensus 234 ~---~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~ 308 (643)
. .......+..++.||+..+... +..+|..+.. |+.. .. . ....+...++.
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~ 214 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGR-----------------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGT 214 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSS-----------------EEEEETTTTEEEEEEC-SS-------ECECEECCCTE
T ss_pred eeeecccccceEEECCEEEEEcCCCe-----------------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCCE
Confidence 0 1112333444678888766431 4566888876 8433 21 1 12224455677
Q ss_pred EEEeccccccccCccccccccCCcEEEEECCCC--cEE
Q 006473 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (643)
Q Consensus 309 iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~ 344 (643)
+|+.. . .+.|++||+.++ .|.
T Consensus 215 l~~~~-~--------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 215 LYVTS-S--------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEE-T--------------TTEEEEEETTTTEEEEE
T ss_pred EEEEe-C--------------CCEEEEEECCCCCEEeE
Confidence 77766 2 245999999987 454
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.02 E-value=0.32 Score=52.52 Aligned_cols=170 Identities=17% Similarity=0.131 Sum_probs=89.7
Q ss_pred ccEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEeccCCC
Q 006473 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~ 176 (643)
..++++|+.++ .|+.-........+...+.++.++.+| +|.. -..++.+|+.++ .|+.-.. .
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~-----------~g~v~ald~~tG~~~W~~~~~--~ 220 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFA-----------GGKLVALDLQTGQPLWEQRVA--L 220 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECC-----------CCEEEEEEccCCCEeeeeccc--c
Confidence 35888888766 476433221001122233344466544 4432 135788998776 4764321 1
Q ss_pred CCCC--------ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCC
Q 006473 177 PSPR--------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQD 246 (643)
Q Consensus 177 P~~R--------s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~ 246 (643)
|... .....++.++.||+... ...+++||+.+.+ |..-.. . ..+.++.++
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~~-------~---~~~p~~~~~ 280 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKRDAS-------S---YQGPAVDDN 280 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEeeccC-------C---ccCceEeCC
Confidence 1111 11223445777777532 2458899987654 755311 1 123345688
Q ss_pred EEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccc
Q 006473 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324 (643)
Q Consensus 247 ~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~ 324 (643)
.||+... ++ .++++|..+. .|..-.. ..+...+.++.+++||+.. .
T Consensus 281 ~vyv~~~-~G----------------~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~--------- 328 (377)
T TIGR03300 281 RLYVTDA-DG----------------VVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F--------- 328 (377)
T ss_pred EEEEECC-CC----------------eEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C---------
Confidence 8887642 22 3788887654 5765321 1122233455677777643 2
Q ss_pred cccccCCcEEEEECCCC
Q 006473 325 IMSLFLNELYGFQLDNH 341 (643)
Q Consensus 325 ~~~~~~ndl~~yd~~t~ 341 (643)
...|+++|+.+.
T Consensus 329 -----~G~l~~~d~~tG 340 (377)
T TIGR03300 329 -----EGYLHWLSREDG 340 (377)
T ss_pred -----CCEEEEEECCCC
Confidence 235889988765
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.85 E-value=0.32 Score=48.40 Aligned_cols=177 Identities=23% Similarity=0.278 Sum_probs=102.4
Q ss_pred ccEEEEECCCCc--EEEecCCCCCCCceeeE--EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccC
Q 006473 101 GDLYRYDVEKQE--WKVISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (643)
Q Consensus 101 ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha--~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~ 174 (643)
+.|.++|+.+++ |+.-.. .+..+.. .+..++.||+..+ ...+++||..+++ |+.-..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~------------~~~l~~~d~~tG~~~W~~~~~- 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG----PGIGGPVATAVPDGGRVYVASG------------DGNLYALDAKTGKVLWRFDLP- 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS----SSCSSEEETEEEETTEEEEEET------------TSEEEEEETTTSEEEEEEECS-
T ss_pred CEEEEEECCCCCEEEEEECC----CCCCCccceEEEeCCEEEEEcC------------CCEEEEEECCCCCEEEEeecc-
Confidence 367888887764 775321 1122222 3346899999853 2679999998875 765432
Q ss_pred CCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eE-EeccCCCCCCCC-CccceeEEEeCCEEEE
Q 006473 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ-EIKPRFGSMWPS-PRSGFQFFVYQDEVFL 250 (643)
Q Consensus 175 g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~-~v~~~~~~~~P~-~R~~~s~~~~~~~iyv 250 (643)
.+.....+..++.||+..+ -+.++.||+.+.+ |+ .....+ +. .+......+.++.+|+
T Consensus 66 ----~~~~~~~~~~~~~v~v~~~----------~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 66 ----GPISGAPVVDGGRVYVGTS----------DGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----SCGGSGEEEETTEEEEEET----------TSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEETTEEEE
T ss_pred ----ccccceeeecccccccccc----------eeeeEecccCCcceeeeecccccc----ccccccccCceEecCEEEE
Confidence 1112224777888888752 2378999977654 88 444421 12 2333344445777766
Q ss_pred EcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCC-------ceeeEEEEECCeEEEeccccccccC
Q 006473 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGP-------RAGFSMCVHKKRALLFGGVVDMEMK 321 (643)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~-------R~g~s~~~~~~~iyvfGG~~~~~~~ 321 (643)
... . ..++++|+.+. .|..-... ++.. .....+++.++.+|++.+..
T Consensus 128 ~~~-~----------------g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----- 183 (238)
T PF13360_consen 128 GTS-S----------------GKLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDG----- 183 (238)
T ss_dssp EET-C----------------SEEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTS-----
T ss_pred Eec-c----------------CcEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCC-----
Confidence 653 2 23889998765 57765422 1211 12234444567888877642
Q ss_pred ccccccccCCcEEEEECCCCc--EEEe
Q 006473 322 GDVIMSLFLNELYGFQLDNHR--WYPL 346 (643)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~--W~~l 346 (643)
.+..+|+.+++ |...
T Consensus 184 ----------~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 184 ----------RVVAVDLATGEKLWSKP 200 (238)
T ss_dssp ----------SEEEEETTTTEEEEEEC
T ss_pred ----------eEEEEECCCCCEEEEec
Confidence 26777999986 7333
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.85 E-value=0.32 Score=52.56 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=100.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+.+. ...|++||+.+++ |+.-... +...+.++.++.+|+.+. -..+
T Consensus 65 ~~~v~v~~~----------~g~v~a~d~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l 117 (377)
T TIGR03300 65 GGKVYAADA----------DGTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLVFVGTE------------KGEV 117 (377)
T ss_pred CCEEEEECC----------CCeEEEEEccCCcEeeeecCCC-----CcccceEEcCCEEEEEcC------------CCEE
Confidence 677776554 1469999988764 8743221 111223344677776432 1468
Q ss_pred EEEECCCCc--EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCC
Q 006473 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (643)
+.||..+++ |+.... .. .....++.++.+|+..+ ...++.||+.+.+ |+.-...+. ..
T Consensus 118 ~ald~~tG~~~W~~~~~----~~-~~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~---~~ 179 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS----SE-VLSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRVTPA---LT 179 (377)
T ss_pred EEEECCCCcEeeeeccC----ce-eecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccCCCc---ee
Confidence 999987764 875432 11 12233445777777432 2458999987654 775433210 01
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeccC--CCCCCCc---eeeEEEEECC
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFSMCVHKK 307 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~--g~~P~~R---~g~s~~~~~~ 307 (643)
.+...+.++.++.+| +|...+ .++.+|+.+. .|+..... +.....| ...+.++.++
T Consensus 180 ~~~~~sp~~~~~~v~-~~~~~g----------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 180 LRGSASPVIADGGVL-VGFAGG----------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred ecCCCCCEEECCEEE-EECCCC----------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 122233445566544 444332 3788887654 67653211 0000011 1233455677
Q ss_pred eEEEeccccccccCccccccccCCcEEEEECCCC--cEEE
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (643)
.+|+... ...+++||+.+. .|..
T Consensus 243 ~vy~~~~---------------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 243 QVYAVSY---------------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEc---------------CCEEEEEECCCCcEEEee
Confidence 7777542 134999998876 4644
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.83 E-value=0.1 Score=52.41 Aligned_cols=164 Identities=14% Similarity=0.109 Sum_probs=92.6
Q ss_pred CeEEEEECCCCcEEEeccCCCCCC-Ccee-EEEEE----CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSP-RSGH-RMVLY----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~-Rs~h-~~~~~----~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
..+.++||.|++|..++....+.. ...+ .+..+ +. +|+.+...... .....+.+|++.++.|+.+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccEEEEEeCCCCccccccCC
Confidence 358899999999999976322111 1111 11112 12 45555432111 12457899999999999987442
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE-eccCCCCCCCceeeEEEEECC
Q 006473 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPRAGFSMCVHKK 307 (643)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-l~~~g~~P~~R~g~s~~~~~~ 307 (643)
+........+.++|.||-+.-.... .....+..||+.+.+|.. ++.+...........++.++|
T Consensus 90 ----~~~~~~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G 154 (230)
T TIGR01640 90 ----PHHPLKSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKG 154 (230)
T ss_pred ----CCccccCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEcccceEeeeeecCccccccccceEEEEECC
Confidence 1111112255678988888643221 111258899999999995 543211001122456677789
Q ss_pred eEEEeccccccccCccccccccCCcEEEEE-CCCCcEEEeEe
Q 006473 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQ-LDNHRWYPLEL 348 (643)
Q Consensus 308 ~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd-~~t~~W~~l~~ 348 (643)
+|.++...... ..-+||+++ -....|+++-.
T Consensus 155 ~L~~v~~~~~~----------~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 155 KLAVLKQKKDT----------NNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EEEEEEecCCC----------CcEEEEEECCCCCCceeEEEE
Confidence 98887654210 013577775 44567987544
No 60
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.52 E-value=0.74 Score=46.50 Aligned_cols=200 Identities=17% Similarity=0.089 Sum_probs=104.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++.||+..- ..+.+|++++.+..-..+..+ . -.+++.. ++.|||... ..+
T Consensus 11 ~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~~---~---~~G~~~~~~~g~l~v~~~-------------~~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI---------PGGRIYRVDPDTGEVEVIDLP---G---PNGMAFDRPDGRLYVADS-------------GGI 62 (246)
T ss_dssp TTEEEEEET---------TTTEEEEEETTTTEEEEEESS---S---EEEEEEECTTSEEEEEET-------------TCE
T ss_pred CCEEEEEEc---------CCCEEEEEECCCCeEEEEecC---C---CceEEEEccCCEEEEEEc-------------Cce
Confidence 467777643 235899999999887765542 2 2333333 688888764 235
Q ss_pred EEEECCCCcEEEeccC--CC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 159 WMLDLKTNQWEQLNLK--GC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~--g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
.++|+.+++++.+... +. +..+.+-.++--++.||+---...... ......+|++++. .+...+... ..
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~-~~~~~~~~~------~~ 134 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPD-GKVTVVADG------LG 134 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETT-SEEEEEEEE------ES
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCC-CeEEEEecC------cc
Confidence 6679999999887663 11 233333333334778776432211110 0001579999998 555544322 11
Q ss_pred ccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC--CCeeEEeccCCCCCCC-ceeeEEEEE-CCeE
Q 006473 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPGP-RAGFSMCVH-KKRA 309 (643)
Q Consensus 236 R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~~~g~~P~~-R~g~s~~~~-~~~i 309 (643)
+ -..++.. +..||+.--.. ..+|+|++. +..+.........+.. ..--++++- .++|
T Consensus 135 ~-pNGi~~s~dg~~lyv~ds~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 135 F-PNGIAFSPDGKTLYVADSFN----------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp S-EEEEEEETTSSEEEEEETTT----------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred c-ccceEECCcchheeeccccc----------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 1 1233333 44677743322 338888875 3334432221111221 223355555 6888
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
|+..-. .+.|++||++...-..+.
T Consensus 198 ~va~~~--------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 198 WVADWG--------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEET--------------TTEEEEEETTSCEEEEEE
T ss_pred EEEEcC--------------CCEEEEECCCccEEEEEc
Confidence 886321 245899998754333333
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.14 Score=54.86 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=110.2
Q ss_pred CCCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCE-EEE
Q 006473 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNY-LYI 139 (643)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~-iyv 139 (643)
...|+-+.--++-+.| .-.|+|.+|. ++. -.+|..|-.++. .+.+.. ..++--..+.+ +|. ..+
T Consensus 208 a~~ps~~~I~sv~FHp--~~plllvaG~--d~~-----lrifqvDGk~N~--~lqS~~--l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHP--TAPLLLVAGL--DGT-----LRIFQVDGKVNP--KLQSIH--LEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCcCcCCceEEEecC--CCceEEEecC--CCc-----EEEEEecCccCh--hheeee--eccCccceeeecCCCceEEE
Confidence 3455555555666777 5689999994 332 245666666665 444443 22222222222 444 777
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
++|. ..-+|.||+.+.+-+++.+......++-+...+ ..+.++++-|.. .-++++...|
T Consensus 275 ~s~r-----------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT 334 (514)
T KOG2055|consen 275 TSGR-----------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKT 334 (514)
T ss_pred eccc-----------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhh
Confidence 7775 355889999999998887643222333333322 344566666643 3466666677
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCce
Q 006473 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (643)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~ 298 (643)
+.|-.--.+ +-..+.+++...+..||+.||+. . +|++|+..+.-...-.- -....
T Consensus 335 ~eli~s~Ki-----eG~v~~~~fsSdsk~l~~~~~~G-e----------------V~v~nl~~~~~~~rf~D---~G~v~ 389 (514)
T KOG2055|consen 335 KELITSFKI-----EGVVSDFTFSSDSKELLASGGTG-E----------------VYVWNLRQNSCLHRFVD---DGSVH 389 (514)
T ss_pred hhhhheeee-----ccEEeeEEEecCCcEEEEEcCCc-e----------------EEEEecCCcceEEEEee---cCccc
Confidence 776433333 44455566666677889998875 3 89999887743332110 11234
Q ss_pred eeEEEE-ECCeEEEecc
Q 006473 299 GFSMCV-HKKRALLFGG 314 (643)
Q Consensus 299 g~s~~~-~~~~iyvfGG 314 (643)
|-+.|. .++..+..|-
T Consensus 390 gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGS 406 (514)
T ss_pred eeeeeecCCCceEEecc
Confidence 444443 4666555554
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.20 E-value=0.43 Score=49.45 Aligned_cols=125 Identities=18% Similarity=0.343 Sum_probs=78.6
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCce--eEEEEE-CCEEEEEeeeecCCCceeeeccEEEEE
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG--HRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~--h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD 215 (643)
++||.+..... . ....+..||+.+.+|..+... ..| +.+... ++.||+.|-+..... -...+-.||
T Consensus 2 ~VGG~F~~aGs--L-~C~~lC~yd~~~~qW~~~g~~-----i~G~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd 70 (281)
T PF12768_consen 2 YVGGSFTSAGS--L-PCPGLCLYDTDNSQWSSPGNG-----ISGTVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYD 70 (281)
T ss_pred EEeeecCCCCC--c-CCCEEEEEECCCCEeecCCCC-----ceEEEEEEEEecCCEEEEEEeeEECCC---CceeEEEEe
Confidence 56776655432 1 247899999999999987652 333 334444 678888877665431 245688999
Q ss_pred cCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
..+.+|..+.......+|.|.....+... ...+++.|..... ..-+..| ...+|..+..
T Consensus 71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------CceEEEE--cCCceEeccc
Confidence 99999999887422334555543333333 4567777765211 2235556 4668988866
No 63
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.53 E-value=5.9 Score=45.10 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=108.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC-CCCC-----ceeeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN-SPPP-----RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~-~P~p-----Rs~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
++.||+... .+.|+++|..++ .|+.-.... .-.+ ......++.+++||+...
T Consensus 69 ~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 69 DGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CCEEEEECC----------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 678887544 246899999876 487543211 0000 111223455777776432
Q ss_pred eecCeEEEEECCCCc--EEEeccCCCCCC--CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEecc
Q 006473 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~g~P~~--Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (643)
-..++.||..|.+ |+.-.. .+.. ....+-++.++.||+-...... .....|+.||..+.+ |+.-..
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~----~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF----GVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc----CCCcEEEEEECCCCceeEeccCc
Confidence 1468999998875 765322 1111 1122345668877764321111 123568889988764 765443
Q ss_pred CCCCC-----------------CC---CCccceeE----EEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC
Q 006473 227 RFGSM-----------------WP---SPRSGFQF----FVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (643)
Q Consensus 227 ~~~~~-----------------~P---~~R~~~s~----~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (643)
.+... .+ ..+.+..+ ++- .+.||+--|.-.. ...........+.+.+..+|+.
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p-~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP-WNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC-CCCCCCCCCCccceeEEEEccc
Confidence 21100 00 01222111 222 4566665554211 0000011223567889999988
Q ss_pred CC--eeEEeccCCC-----CCCCceeeEEEEECCe---EEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 281 TW--EWSKVKKIGM-----PPGPRAGFSMCVHKKR---ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 281 t~--~W~~l~~~g~-----~P~~R~g~s~~~~~~~---iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
|. +|..-..... .+.+..-+.+- .+++ +++.+..+ ..+|++|..|.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~-~~G~~~~~v~~~~K~--------------G~~~vlDr~tG~ 336 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLK-KDGKPRKLLAHADRN--------------GFFYVLDRTNGK 336 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEec-cCCcEEEEEEEeCCC--------------ceEEEEECCCCc
Confidence 76 6776543211 11111111110 2443 77777654 348899988875
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.48 E-value=0.23 Score=53.38 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=91.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE-EEeccCCCCCCCceeEEEEECCE-EEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLYKHK-IIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W-~~~~~~g~P~~Rs~h~~~~~~~~-lyvfGG~~~~~~~~~~~~dv 211 (643)
...|.+.+|.+.. -.+|..|-.+|.- +.+... -.|....+ ..-++. .++++|. -.-+
T Consensus 224 ~~plllvaG~d~~---------lrifqvDGk~N~~lqS~~l~--~fPi~~a~-f~p~G~~~i~~s~r---------rky~ 282 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---------LRIFQVDGKVNPKLQSIHLE--KFPIQKAE-FAPNGHSVIFTSGR---------RKYL 282 (514)
T ss_pred CCceEEEecCCCc---------EEEEEecCccChhheeeeec--cCccceee-ecCCCceEEEeccc---------ceEE
Confidence 4578889987543 4577777777752 111111 11222111 122444 7777775 3457
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeE-EEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQF-FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
|.||+.+.+-+++.++-+- + .++-+.+ +.+.+.++++-|..+. ++.+...++.|..--.+
T Consensus 283 ysyDle~ak~~k~~~~~g~--e-~~~~e~FeVShd~~fia~~G~~G~----------------I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGV--E-EKSMERFEVSHDSNFIAIAGNNGH----------------IHLLHAKTKELITSFKI 343 (514)
T ss_pred EEeeccccccccccCCCCc--c-cchhheeEecCCCCeEEEcccCce----------------EEeehhhhhhhhheeee
Confidence 9999999999888876331 2 2233333 3346667777777665 77888888888654332
Q ss_pred CCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 291 GMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 291 g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+..-..++....+.+||+.||. ..||+||+..+
T Consensus 344 ---eG~v~~~~fsSdsk~l~~~~~~---------------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 344 ---EGVVSDFTFSSDSKELLASGGT---------------GEVYVWNLRQN 376 (514)
T ss_pred ---ccEEeeEEEecCCcEEEEEcCC---------------ceEEEEecCCc
Confidence 2233444555556788888885 35999999887
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.44 E-value=0.41 Score=51.24 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=73.4
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCcee---eec
Q 006473 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR---YYN 209 (643)
Q Consensus 133 ~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~---~~~ 209 (643)
.+++|+..+.. ..+.+||+.+..-...+. ++.+.....++.++++||++........... ..-
T Consensus 75 ~gskIv~~d~~------------~~t~vyDt~t~av~~~P~--l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 75 HGSKIVAVDQS------------GRTLVYDTDTRAVATGPR--LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred cCCeEEEEcCC------------CCeEEEECCCCeEeccCC--CCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 38888888654 237799999988775554 4555555566777999999987643221100 011
Q ss_pred cEEEEE--------cCCCceEEeccCCCCCCCCC--ccceeEEEe-CCEEEE-EcCCCCCCCCccCCCCCCceeeeEEEE
Q 006473 210 DLYVFD--------LDQFKWQEIKPRFGSMWPSP--RSGFQFFVY-QDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (643)
Q Consensus 210 dv~~yD--------~~t~~W~~v~~~~~~~~P~~--R~~~s~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (643)
.+..|+ .....|+.++++|-...... +.-.+.+++ +..|+| .-|.. .-+|.|
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----------------~GTysf 204 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----------------WGTYSF 204 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----------------eEEEEE
Confidence 233333 22346777766532111111 001233344 667777 33321 238999
Q ss_pred eCCCCeeEEecc
Q 006473 278 DPRTWEWSKVKK 289 (643)
Q Consensus 278 d~~t~~W~~l~~ 289 (643)
|+.+.+|+++-.
T Consensus 205 Dt~~~~W~~~Gd 216 (342)
T PF07893_consen 205 DTESHEWRKHGD 216 (342)
T ss_pred EcCCcceeeccc
Confidence 999999999954
No 66
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.34 E-value=1.9 Score=48.05 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=79.4
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
..+|++|+.+++-+.+.. .+..-...+..--+..|++.....+ ..++|++|+.+...+.+.... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g-------~~~Iy~~dl~tg~~~~lt~~~-----~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDG-------QPEIYVVDIATKALTRITRHR-----AI 307 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCC-------CeEEEEEECCCCCeEECccCC-----CC
Confidence 579999999887766654 2211111111111445655433221 357999999998887775431 11
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 236 RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 236 R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
-...+....+..|++.....+ ...+|++|+.+..+.++...+... ...+ ..-+++.++|.+.
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~-~SpDG~~l~~~~~ 369 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASGKVSRLTFEGEQN---LGGS-ITPDGRSMIMVNR 369 (448)
T ss_pred ccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEEecCCCCC---cCee-ECCCCCEEEEEEe
Confidence 111222222445555432221 146999999999888875322111 1111 1224544555433
Q ss_pred cccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 316 VDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
.. -...||.+|+.+.....+.
T Consensus 370 ~~-----------g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 370 TN-----------GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred cC-----------CceEEEEEECCCCCeEEcc
Confidence 21 1246999999998776654
No 67
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.16 E-value=4.9 Score=44.42 Aligned_cols=194 Identities=13% Similarity=0.002 Sum_probs=96.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++|+.+++.+.++... ..-...+....+..|++...... ..++|++|+.++...++... +..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~~--~~~- 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTDS--PAI- 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccCC--CCc-
Confidence 57999999999888776422 21122222222445554432211 25799999999887776541 211
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
..+....-+++-++|.... .+ ...+|++|+.+...+.+... ............+..|++.. ....
T Consensus 292 ~~~~~~spDG~~i~f~s~~-~g-----~~~Iy~~d~~g~~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~-~~~~--- 356 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDR-SG-----SPQLYVMNADGSNPRRISFG-----GGRYSTPVWSPRGDLIAFTK-QGGG--- 356 (435)
T ss_pred cCceeEcCCCCEEEEEECC-CC-----CCeEEEEECCCCCeEEeecC-----CCcccCeEECCCCCEEEEEE-cCCC---
Confidence 1111111234433343311 11 24789999888777776543 11111112222244554443 2111
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
...++.+|+.+.....+... ... ....+ -+++.++|-...... .....||++++.
T Consensus 357 ----------~~~i~~~d~~~~~~~~lt~~-----~~~-~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl~ 412 (435)
T PRK05137 357 ----------QFSIGVMKPDGSGERILTSG-----FLV-EGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDLT 412 (435)
T ss_pred ----------ceEEEEEECCCCceEeccCC-----CCC-CCCeECCCCCEEEEEEccCCC--------CCcceEEEEECC
Confidence 13588889876655554321 111 11122 255655554432100 002469999998
Q ss_pred CCcEEEeE
Q 006473 340 NHRWYPLE 347 (643)
Q Consensus 340 t~~W~~l~ 347 (643)
...-..+.
T Consensus 413 g~~~~~l~ 420 (435)
T PRK05137 413 GRNEREVP 420 (435)
T ss_pred CCceEEcc
Confidence 76655554
No 68
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.13 E-value=1.5 Score=42.87 Aligned_cols=149 Identities=21% Similarity=0.340 Sum_probs=76.1
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYK 156 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~ 156 (643)
.+++|+|-|. .+|+|+..... -+.|...-...|..-.++... ++.+|+|-| +
T Consensus 16 ~g~~y~FkG~-----------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------------~ 71 (194)
T cd00094 16 RGELYFFKGR-----------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------------D 71 (194)
T ss_pred CCEEEEEeCC-----------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------------C
Confidence 4889999883 56777765221 122222111122223334343 389999977 4
Q ss_pred eEEEEECCCCcEE---EeccCCCCC-CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCC
Q 006473 157 DFWMLDLKTNQWE---QLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (643)
Q Consensus 157 dv~~yD~~t~~W~---~~~~~g~P~-~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (643)
.+|+|+..+..+. .+...+.|. +..-.++..+ ++++|+|.| +..|+||...++...--+.+..
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcchh
Confidence 6888887642221 111111222 1111233344 579999988 3578888765543211111000
Q ss_pred ----CCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 231 ----MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 231 ----~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
.+|.. ...++...++.+|+|-|. ..|+||..+.+
T Consensus 141 ~~w~g~p~~-idaa~~~~~~~~yfF~g~------------------~y~~~d~~~~~ 178 (194)
T cd00094 141 TDFPGVPDK-VDAAFRWLDGYYYFFKGD------------------QYWRFDPRSKE 178 (194)
T ss_pred hcCCCcCCC-cceeEEeCCCcEEEEECC------------------EEEEEeCccce
Confidence 01221 222222224889999774 38899987665
No 69
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.10 E-value=3.9 Score=41.50 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=53.6
Q ss_pred EEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 83 ~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+|+.++. -+.+++||+.+++-...-... ..++ +++.. +..+|+.++. .+.+++
T Consensus 2 ~~~~s~~~---------d~~v~~~d~~t~~~~~~~~~~-~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEK---------DNTISVIDTATLEVTRTFPVG-QRPR---GITLSKDGKLLYVCASD-----------SDTIQV 57 (300)
T ss_pred cEEEEecC---------CCEEEEEECCCCceEEEEECC-CCCC---ceEECCCCCEEEEEECC-----------CCeEEE
Confidence 46666662 247888998877643322211 1122 22222 3467777653 246889
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
||+.+.+....-.. .+.+ +.+++. ++.+|+.++. ...+.+||+.+..
T Consensus 58 ~d~~~~~~~~~~~~-~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 58 IDLATGEVIGTLPS-GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIETRK 106 (300)
T ss_pred EECCCCcEEEeccC-CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCCCe
Confidence 99988776542221 1111 222332 3456665432 2468889987753
No 70
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.76 E-value=2.7 Score=46.76 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=80.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++|+.+++-+.++... ..-...++..-+..|++...... ..++|++|+.+++.+.+... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~--g~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~--~~-- 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP--GINGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRH--RA-- 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCC--CCcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccC--CC--
Confidence 47999999988877775421 11111122222455665533211 25799999999998877542 11
Q ss_pred ceeEEEEE--CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 181 SGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 181 s~h~~~~~--~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
......+ ++ +|++.....+ ...+|++|+.+.++..+.... ... ...+....+..|++.+.. ..
T Consensus 307 -~~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~~g----~~~-~~~~~SpDG~~l~~~~~~-~g 372 (448)
T PRK04792 307 -IDTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTFEG----EQN-LGGSITPDGRSMIMVNRT-NG 372 (448)
T ss_pred -CccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEecCC----CCC-cCeeECCCCCEEEEEEec-CC
Confidence 1111222 33 4544332111 257999999999888875331 111 112222234455554322 11
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
...+|.+|+.+.....+..
T Consensus 373 -------------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -------------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -------------ceEEEEEECCCCCeEEccC
Confidence 1358999998888777653
No 71
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.68 E-value=2.6 Score=41.19 Aligned_cols=153 Identities=17% Similarity=0.263 Sum_probs=77.7
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCCC-CCCceeEEEEEC--CEEEEEeeeecCCC
Q 006473 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYK--HKIIVFGGFYDTLR 203 (643)
Q Consensus 129 a~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P-~~Rs~h~~~~~~--~~lyvfGG~~~~~~ 203 (643)
+++...+.+|+|-| +.+|+|+..... -..+.. ..| .+..-.++..+. +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------------~~~w~~~~~~~~~~p~~I~~-~w~~~p~~IDAa~~~~~~~~~yfFkg------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------------RYFWRLSPGKPPGSPFLISS-FWPSLPSPVDAAFERPDTGKIYFFKG------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------------CEEEEEeCCCCCCCCeEhhh-hCCCCCCCccEEEEECCCCEEEEECC------
Confidence 33444699999987 357888765221 122211 012 122223344443 79999976
Q ss_pred ceeeeccEEEEEcCCCceEEeccCCC-CCCCC-CccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC
Q 006473 204 EVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPS-PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (643)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~-~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (643)
+.+|+|+..+..+........ +.++. .....++... ++++|+|-|. ..|+|+..
T Consensus 71 -----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~------------------~y~ry~~~ 127 (194)
T cd00094 71 -----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD------------------KYWRYDEK 127 (194)
T ss_pred -----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC------------------EEEEEeCC
Confidence 357788765422211111110 11111 2222223222 6899999874 26788865
Q ss_pred CCeeEEe-----cc--CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 281 TWEWSKV-----KK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 281 t~~W~~l-----~~--~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..+...- .. +| .|. ..-+++...++++|+|-|. .+|+||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g-~p~-~idaa~~~~~~~~yfF~g~----------------~y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPG-VPD-KVDAAFRWLDGYYYFFKGD----------------QYWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCC-cCC-CcceeEEeCCCcEEEEECC----------------EEEEEeCccce
Confidence 5443211 00 11 122 1222333334899999884 48999988766
No 72
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.58 E-value=0.94 Score=48.51 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=72.3
Q ss_pred ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCC
Q 006473 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (643)
Q Consensus 188 ~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~ 267 (643)
.+++|+..+.. ....+||+.+..-...+.+ +.+.....++.+++.||++........ ....
T Consensus 75 ~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l-----~~pk~~pisv~VG~~LY~m~~~~~~~~--~~~~-- 135 (342)
T PF07893_consen 75 HGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL-----HSPKRCPISVSVGDKLYAMDRSPFPEP--AGRP-- 135 (342)
T ss_pred cCCeEEEEcCC----------CCeEEEECCCCeEeccCCC-----CCCCcceEEEEeCCeEEEeeccCcccc--ccCc--
Confidence 48899888553 3478999998865544443 445555566667888999988754300 0000
Q ss_pred CceeeeEEEEe--------CCCCeeEEeccCCCCCCCce-------eeEEEEE-CCeEEE-eccccccccCccccccccC
Q 006473 268 GIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRA-------GFSMCVH-KKRALL-FGGVVDMEMKGDVIMSLFL 330 (643)
Q Consensus 268 ~~~~~dv~~yd--------~~t~~W~~l~~~g~~P~~R~-------g~s~~~~-~~~iyv-fGG~~~~~~~~~~~~~~~~ 330 (643)
....-.+..|+ .....|..++.+ |-.+. -.+-+++ +..|+| .-|..
T Consensus 136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------------- 198 (342)
T PF07893_consen 136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------------- 198 (342)
T ss_pred cceeEEEeccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc--------------
Confidence 00011222333 345577777543 32221 2344555 566776 44321
Q ss_pred CcEEEEECCCCcEEEeEe
Q 006473 331 NELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 331 ndl~~yd~~t~~W~~l~~ 348 (643)
.-.|.||+.+.+|+.+..
T Consensus 199 ~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 199 WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred eEEEEEEcCCcceeeccc
Confidence 127999999999999854
No 73
>PRK13684 Ycf48-like protein; Provisional
Probab=94.52 E-value=7.9 Score=41.29 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE
Q 006473 110 KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (643)
Q Consensus 110 ~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~ 188 (643)
-.+|+.+..+. ..+...+.+.++ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-+-+.+...
T Consensus 118 G~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~---~~~g~~~~i~~~ 181 (334)
T PRK13684 118 GKNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVE---DAAGVVRNLRRS 181 (334)
T ss_pred CCCCeEccCCc-CCCCCceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcC---CCcceEEEEEEC
Confidence 34899886431 122233334444 4456666542 235555445679998865 223344555555
Q ss_pred CCEEEEEeeeecCCCceeeeccEEE-EEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYV-FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSE 266 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~-yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~ 266 (643)
.+..|+..|..+ .++. .+....+|+.+... ..+.-++++.. ++.++++|... .
T Consensus 182 ~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~~------~~~~l~~i~~~~~g~~~~vg~~G-~--------- 236 (334)
T PRK13684 182 PDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQRN------SSRRLQSMGFQPDGNLWMLARGG-Q--------- 236 (334)
T ss_pred CCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeCC------CcccceeeeEcCCCCEEEEecCC-E---------
Confidence 444444444221 1222 23334579887543 33444444444 67788887542 1
Q ss_pred CCceeeeEEEE--eCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccc
Q 006473 267 KGIIHSDLWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (643)
Q Consensus 267 ~~~~~~dv~~y--d~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~ 315 (643)
.++ +-...+|+.+... .......-+++++. .+.+|++|..
T Consensus 237 --------~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 237 --------IRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred --------EEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCC
Confidence 123 2234589976431 00011223344444 5678888753
No 74
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.44 E-value=11 Score=42.50 Aligned_cols=122 Identities=14% Similarity=0.196 Sum_probs=62.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC--cEEEecCCC--CCCCc-eeeEEEEEC-CEEEEEeCccCCCCCCccee
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--SPPPR-SAHQAVSWK-NYLYIFGGEFTSPNQERFHH 154 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~--~W~~l~s~~--~P~pR-s~ha~~~~~-~~iyvfGG~~~~~~~~~~~~ 154 (643)
++.||+.... ..|+.+|..+. .|+.-.... .+.+. ....++..+ +.||+...
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------------ 118 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------------ 118 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------------
Confidence 6888876541 47899999876 488533211 00010 111223445 77776432
Q ss_pred cCeEEEEECCCCc--EEEeccCCC-CCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEec
Q 006473 155 YKDFWMLDLKTNQ--WEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (643)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~g~-P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (643)
-..++.||..|.+ |+.-..... +......+.++.++.+|+ |..............|+.||..+.+ |+.-.
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 2468899988764 876432110 000012233555666664 4321110000124578999998754 87644
No 75
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.41 E-value=4.5 Score=44.69 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=74.9
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+|++|+.++....+.. .+...... ...-++ +|++.....+ ..++|++|+.+.....+... +.
T Consensus 226 ~~i~~~dl~~g~~~~l~~--~~g~~~~~-~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~Lt~~-----~~ 290 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN--FPGMTFAP-RFSPDGRKVVMSLSQGG-------NTDIYTMDLRSGTTTRLTDS-----PA 290 (435)
T ss_pred CEEEEEECCCCcEEEeec--CCCcccCc-EECCCCCEEEEEEecCC-------CceEEEEECCCCceEEccCC-----CC
Confidence 579999999988877754 22211111 111234 4544332211 35799999998877766543 11
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.-...+....+..|++.....+ ...+|++|+.+.....+... + .+.......-+++.++|..
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g--------------~~~Iy~~d~~g~~~~~lt~~---~-~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSG--------------SPQLYVMNADGSNPRRISFG---G-GRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCC--------------CCeEEEEECCCCCeEEeecC---C-CcccCeEECCCCCEEEEEE
Confidence 1111222222444544322111 24689999888777776532 1 1111111112444444433
Q ss_pred ccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
... . ...|+++|+.+.....+.
T Consensus 353 ~~~---------~--~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 353 QGG---------G--QFSIGVMKPDGSGERILT 374 (435)
T ss_pred cCC---------C--ceEEEEEECCCCceEecc
Confidence 211 0 246899998776655443
No 76
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.38 E-value=6.3 Score=42.92 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=77.9
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|+||+.++....+.... ......++..-+..|++...... ..++|.+|+.+.....+... +...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~---------~~~i~~~d~~~~~~~~l~~~--~~~~ 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP--GMNGAPAFSPDGSKLAVSLSKDG---------NPDIYVMDLDGKQLTRLTNG--PGID 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEECCCC---------CccEEEEECCCCCEEECCCC--CCCC
Confidence 47899999988776665321 11222111112345655433211 25799999998887777542 1111
Q ss_pred ceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCC
Q 006473 181 SGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~ 258 (643)
... ....++ +|++.....+ ...+|++|+.+..+..+.... ......... ++..+++......
T Consensus 281 ~~~-~~s~dg~~l~~~s~~~g-------~~~iy~~d~~~~~~~~l~~~~-------~~~~~~~~spdg~~i~~~~~~~~- 344 (417)
T TIGR02800 281 TEP-SWSPDGKSIAFTSDRGG-------SPQIYMMDADGGEVRRLTFRG-------GYNASPSWSPDGDLIAFVHREGG- 344 (417)
T ss_pred CCE-EECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccCeEECCCCCEEEEEEccCC-
Confidence 111 111244 4444322111 247999999888887765431 111222222 4555555443221
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
...++.+|+.+..+..+..
T Consensus 345 ------------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 ------------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ------------ceEEEEEeCCCCCeEEccC
Confidence 2458999998876666643
No 77
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.32 E-value=6 Score=43.71 Aligned_cols=185 Identities=10% Similarity=-0.014 Sum_probs=94.6
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++|+.+++-+.++... ..........-+..|++...... ..++|++|+.++....+... +. .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~--g~~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~--~~-~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR--GINGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNH--FG-I 293 (433)
T ss_pred cEEEEEECCCCCEEEeccCC--CCccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccC--CC-C
Confidence 46899999998887775421 11111111111445554432211 24799999999887766431 11 1
Q ss_pred ceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 181 SGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 181 s~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
...... -+++-++|..... + ...+|.+|+.+..+..+... .......+....+..|++..+..+.
T Consensus 294 -~~~~~~spDG~~l~f~sd~~-g-----~~~iy~~dl~~g~~~~lt~~-----g~~~~~~~~SpDG~~Ia~~~~~~~~-- 359 (433)
T PRK04922 294 -DTEPTWAPDGKSIYFTSDRG-G-----RPQIYRVAASGGSAERLTFQ-----GNYNARASVSPDGKKIAMVHGSGGQ-- 359 (433)
T ss_pred -ccceEECCCCCEEEEEECCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEECCCCc--
Confidence 111122 2444333432111 1 24799999988888777643 1111112222235566655442211
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
..++++|+.+..+..+...+ .. ... ...-+++.++|..... -...||.+++.
T Consensus 360 ------------~~I~v~d~~~g~~~~Lt~~~---~~-~~p-~~spdG~~i~~~s~~~-----------g~~~L~~~~~~ 411 (433)
T PRK04922 360 ------------YRIAVMDLSTGSVRTLTPGS---LD-ESP-SFAPNGSMVLYATREG-----------GRGVLAAVSTD 411 (433)
T ss_pred ------------eeEEEEECCCCCeEECCCCC---CC-CCc-eECCCCCEEEEEEecC-----------CceEEEEEECC
Confidence 26899999888877665321 10 111 1223566666654321 12458888886
Q ss_pred CC
Q 006473 340 NH 341 (643)
Q Consensus 340 t~ 341 (643)
..
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 53
No 78
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.28 E-value=5.3 Score=43.95 Aligned_cols=146 Identities=11% Similarity=0.090 Sum_probs=78.7
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|++|+.+++-+.+... +. . .....+ + ++|++.....+ ..++|++|+.+.....+...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~--~g--~-~~~~~~SpDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF--EG--L-NGAPAWSPDGSKLAFVLSKDG-------NPEIYVMDLASRQLSRVTNH----- 285 (430)
T ss_pred CEEEEEECCCCCEEEccCC--CC--C-cCCeEECCCCCEEEEEEccCC-------CceEEEEECCCCCeEEcccC-----
Confidence 4799999999887776541 11 1 112223 3 34544322111 25799999999988777543
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyv 311 (643)
+..-..+.....+..|++.....+ ...+|.+++.+..+.++...+ .......+ -+++.++
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEE
Confidence 111112222222445555432211 236899999888888775321 11111222 2444444
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
|....+ + ...|+.+|+.+..+..+..
T Consensus 347 ~~~~~~---------~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 347 MVHRQD---------G--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEccC---------C--ceEEEEEECCCCCEEEccC
Confidence 433221 1 2359999999988776654
No 79
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.24 E-value=4.4 Score=44.77 Aligned_cols=145 Identities=9% Similarity=0.074 Sum_probs=76.3
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|++|+.+++...+.. .+.. . ....+ +.+|++.....+ ..++|++|+.+....++...
T Consensus 228 ~~l~~~dl~~g~~~~l~~--~~g~-~--~~~~~SpDG~~l~~~~s~~g-------~~~Iy~~d~~~g~~~~lt~~----- 290 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS--FRGI-N--GAPSFSPDGRRLALTLSRDG-------NPEIYVMDLGSRQLTRLTNH----- 290 (433)
T ss_pred cEEEEEECCCCCEEEecc--CCCC-c--cCceECCCCCEEEEEEeCCC-------CceEEEEECCCCCeEECccC-----
Confidence 569999999888777654 2211 1 12222 335554332211 25799999998876665433
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyv 311 (643)
+..-...+....+..|++.....+ ..++|.++..+..+.++...+ ....+.++. +++.++
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGG--------------RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEE
Confidence 111112222222344544432221 136999999888887775422 111122222 444444
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
|....+ . -..|++||+.++.+..+.
T Consensus 352 ~~~~~~---------~--~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 352 MVHGSG---------G--QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred EEECCC---------C--ceeEEEEECCCCCeEECC
Confidence 432211 0 136999999988877554
No 80
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.17 E-value=8.9 Score=42.17 Aligned_cols=183 Identities=5% Similarity=-0.010 Sum_probs=93.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+|++++.+++-+.+.... . ...+.... +..|++..-... ..++|++|+.+..++.+... +.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~--g--~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE--G--LNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNH--PA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC--C--CcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccC--CC
Confidence 47999999998888775422 1 11111121 345544322111 25799999999998877541 11
Q ss_pred CCceeEEEEEC-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 179 PRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 179 ~Rs~h~~~~~~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
........-+ ..||+.... . + ...+|.+|+.+..+..+.... ...........+..|++.....+
T Consensus 288 -~~~~~~~spDg~~i~f~s~~-~-g-----~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~- 353 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDR-G-G-----KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG- 353 (430)
T ss_pred -CcCCeEECCCCCEEEEEECC-C-C-----CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC-
Confidence 1111111113 345543211 1 1 347999999988888775431 00011112222455555443211
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
...++.+|+.+..+..+...+. . ... ...-+++.++|...... ...|+.++
T Consensus 354 -------------~~~l~~~dl~tg~~~~lt~~~~---~-~~p-~~spdg~~i~~~~~~~g-----------~~~l~~~~ 404 (430)
T PRK00178 354 -------------NFHVAAQDLQRGSVRILTDTSL---D-ESP-SVAPNGTMLIYATRQQG-----------RGVLMLVS 404 (430)
T ss_pred -------------ceEEEEEECCCCCEEEccCCCC---C-CCc-eECCCCCEEEEEEecCC-----------ceEEEEEE
Confidence 1359999999888877754211 1 111 12225666666543220 23477777
Q ss_pred CCCC
Q 006473 338 LDNH 341 (643)
Q Consensus 338 ~~t~ 341 (643)
+..+
T Consensus 405 ~~g~ 408 (430)
T PRK00178 405 INGR 408 (430)
T ss_pred CCCC
Confidence 7543
No 81
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.12 E-value=7 Score=43.21 Aligned_cols=149 Identities=10% Similarity=0.028 Sum_probs=77.0
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+|++|+.+++-+.+.. .+.. .+.....-++ +|++.....+ ...+|++|+.+....++... +.
T Consensus 223 ~~i~i~dl~~G~~~~l~~--~~~~-~~~~~~SPDG~~La~~~~~~g-------~~~I~~~d~~tg~~~~lt~~-----~~ 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS--FPRH-NGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS 287 (429)
T ss_pred cEEEEEECCCCCeEEccC--CCCC-cCCeEECCCCCEEEEEEcCCC-------CcEEEEEECCCCCEEEccCC-----CC
Confidence 468999998887666643 1211 1111111134 5554433211 23699999998887776543 11
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.-........+..|++.....+ ...+|.+++.+....++...+. ........-+++.++|.+
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g--------------~~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAG--------------RPQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVS 349 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCC--------------CceEEEEECCCCCeEEeecCCC----CccCEEECCCCCEEEEEE
Confidence 1122222222444444332211 1368999988877666643211 111111122455555544
Q ss_pred ccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
... -...|+++|+.++.+..|..
T Consensus 350 ~~~-----------g~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 350 SNG-----------GQQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ccC-----------CCceEEEEECCCCCeEEeCC
Confidence 321 02469999999998877663
No 82
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.11 E-value=8.6 Score=40.50 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=43.9
Q ss_pred ccEEEEECC-CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEeccCC
Q 006473 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKG 175 (643)
Q Consensus 101 ndv~~yd~~-~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g 175 (643)
+.+..|++. ++.+..+.... .+..-+.++.. +..||+..-. -+.+..|++.++ ....+..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~-----------~~~v~v~~~~~~g~~~~~~~~-- 121 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYN-----------ANCVSVSPLDKDGIPVAPIQI-- 121 (330)
T ss_pred CcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcC-----------CCeEEEEEECCCCCCCCceee--
Confidence 466677775 45666543221 11111223333 4456665421 145666766532 1112211
Q ss_pred CCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 176 ~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
.+....-|.+++. ++++|+..- ..+.|++||+.+
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~---------~~~~v~v~d~~~ 157 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCL---------KEDRIRLFTLSD 157 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeC---------CCCEEEEEEECC
Confidence 1222223554444 346665432 146789999876
No 83
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.96 E-value=5.1 Score=43.65 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=79.0
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..++++|+.++....+.. .+..... .+.. + +.|++.....+ ...+|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~--~~~~~~~--~~~spDg~~l~~~~~~~~-------~~~i~~~d~~~~~~~~l~~~~----- 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS--FPGMNGA--PAFSPDGSKLAVSLSKDG-------NPDIYVMDLDGKQLTRLTNGP----- 277 (417)
T ss_pred cEEEEEECCCCCEEEeec--CCCCccc--eEECCCCCEEEEEECCCC-------CccEEEEECCCCCEEECCCCC-----
Confidence 578999999887666543 2211111 2222 3 35555433211 357999999988777765431
Q ss_pred CCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEEe
Q 006473 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLF 312 (643)
Q Consensus 234 ~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyvf 312 (643)
...........+..|++.....+ ...+|.+++.+..+..+...+ ......++ -+++.+++
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEE
Confidence 11111122222344554433221 136899999888887775422 11222222 25666666
Q ss_pred ccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
..... -...|+.+|+.+..+..+.
T Consensus 339 ~~~~~-----------~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 339 VHREG-----------GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEccC-----------CceEEEEEeCCCCCeEEcc
Confidence 55422 1246999999987665554
No 84
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.52 E-value=8.2 Score=42.60 Aligned_cols=145 Identities=11% Similarity=0.081 Sum_probs=74.0
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..+|++|+.+++=..+.. .+. ...+..+ ++ +|++.....+ ..++|.+|+.+.....+...
T Consensus 220 ~~I~~~dl~~g~~~~l~~--~~g---~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 282 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN--FKG---SNSAPAWSPDGRTLAVALSRDG-------NSQIYTVNADGSGLRRLTQS----- 282 (427)
T ss_pred cEEEEEECCCCCEEEeec--CCC---CccceEECCCCCEEEEEEccCC-------CceEEEEECCCCCcEECCCC-----
Confidence 469999998887555543 121 1112233 34 5544333221 36799999887776665432
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyv 311 (643)
.......+....+..|++.....+ ...+|.++..+....++...+ ....+.++ -+++.++
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g--------------~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGG--------------APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCC--------------CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEE
Confidence 111112222222444554332111 136899998877777765321 11112222 2454444
Q ss_pred eccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
|..... . ...|+++|+.+.....+.
T Consensus 344 ~~s~~~---------g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 344 YISRVG---------G--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEccC---------C--cEEEEEEECCCCCeEEcc
Confidence 443221 0 136999999988766554
No 85
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.31 E-value=0.95 Score=46.95 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=69.8
Q ss_pred eccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
+..|..||+.+.+|..+..- -.+ .-.++... +++|||.|-..-. +.....+-.||..+.+|+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-----i~G-~V~~l~~~~~~~Llv~G~ft~~----------~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-----ISG-TVTDLQWASNNQLLVGGNFTLN----------GTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-----ceE-EEEEEEEecCCEEEEEEeeEEC----------CCCceeEEEEecCCCeeee
Confidence 78899999999999988654 122 12233333 7777777754433 1134458899999999999
Q ss_pred eccC--CCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 287 VKKI--GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 287 l~~~--g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+... ...|.+....+.... ...+++.|.... -..-|..| +..+|..+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~-----------g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN-----------GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecC-----------CCceEEEE--cCCceEeccc
Confidence 8762 234555433333323 356777776521 02235555 6779999987
No 86
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.25 E-value=8.9 Score=37.51 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=35.2
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCc
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~ 151 (643)
.+...+ ++..+++|+. .+.+++|++.+......-.. ....-.++... ++.+++.|+.
T Consensus 56 ~~~~~~--~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~-------- 113 (289)
T cd00200 56 DVAASA--DGTYLASGSS---------DKTIRLWDLETGECVRTLTG---HTSYVSSVAFSPDGRILSSSSR-------- 113 (289)
T ss_pred EEEECC--CCCEEEEEcC---------CCeEEEEEcCcccceEEEec---cCCcEEEEEEcCCCCEEEEecC--------
Confidence 344443 4556666662 24788888887532221111 11112222233 3456666652
Q ss_pred ceecCeEEEEECCCCc
Q 006473 152 FHHYKDFWMLDLKTNQ 167 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~ 167 (643)
-..+.+||+.+..
T Consensus 114 ---~~~i~~~~~~~~~ 126 (289)
T cd00200 114 ---DKTIKVWDVETGK 126 (289)
T ss_pred ---CCeEEEEECCCcE
Confidence 1457888887554
No 87
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.92 E-value=18 Score=40.02 Aligned_cols=185 Identities=10% Similarity=-0.012 Sum_probs=95.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
..+|++++.+++-+.+.... ..-....+..-+..|++...... ..++|++|+.+....++... +
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~--~--- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDG--R--- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC--CCcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCC--C---
Confidence 46899999888777765421 11111111111445655433211 24699999999888777542 1
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~ 258 (643)
.......+ +++.++|..... + ...+|.+|+.+..-..+... ........+...+..|++.+...+
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~-g-----~~~Iy~~d~~~g~~~~lt~~-----~~~~~~~~~SpDG~~Ia~~~~~~g-- 353 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQA-G-----RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG-- 353 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCC-C-----CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEEccCC--
Confidence 12223333 444444433211 1 24789999988776666432 111111222222444544443221
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEEC
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (643)
...++.+|+.+..+..+..... . ...+ ..-+++.++|.+.... ...|++.++
T Consensus 354 ------------~~~I~~~dl~~g~~~~Lt~~~~--~--~~p~-~SpDG~~i~~~s~~~~-----------~~~l~~~~~ 405 (429)
T PRK03629 354 ------------QQHIAKQDLATGGVQVLTDTFL--D--ETPS-IAPNGTMVIYSSSQGM-----------GSVLNLVST 405 (429)
T ss_pred ------------CceEEEEECCCCCeEEeCCCCC--C--CCce-ECCCCCEEEEEEcCCC-----------ceEEEEEEC
Confidence 1358899999988887764210 0 1111 2246777777665321 234677776
Q ss_pred CCCc
Q 006473 339 DNHR 342 (643)
Q Consensus 339 ~t~~ 342 (643)
+...
T Consensus 406 ~G~~ 409 (429)
T PRK03629 406 DGRF 409 (429)
T ss_pred CCCC
Confidence 5443
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.81 E-value=10 Score=37.05 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.++++|+. .+.++.|+..+..-....... ... -..+... ++..+++|+.. ..+.
T Consensus 20 ~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~--~~~-i~~~~~~~~~~~l~~~~~~-----------~~i~ 76 (289)
T cd00200 20 DGKLLATGSG---------DGTIKVWDLETGELLRTLKGH--TGP-VRDVAASADGTYLASGSSD-----------KTIR 76 (289)
T ss_pred CCCEEEEeec---------CcEEEEEEeeCCCcEEEEecC--Ccc-eeEEEECCCCCEEEEEcCC-----------CeEE
Confidence 4567777773 246777887766422111111 111 1122222 34466666642 4578
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+||+.+......-. .....-.++... ++.+++.|+. ...+.+||+.+..
T Consensus 77 i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 77 LWDLETGECVRTLT---GHTSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred EEEcCcccceEEEe---ccCCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 88887653222111 111111222233 3355555552 2468888887543
No 89
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.36 E-value=18 Score=39.79 Aligned_cols=195 Identities=12% Similarity=0.149 Sum_probs=106.2
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
.++|++|+.+++=+.++... ..-....+..-+.+|++.-.... ..++|.+|+.++.++++... +.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~~--~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ--GMLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITNY--PG-- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCC--CcEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEcccC--CC--
Confidence 37999999998877776421 11111112112445655433211 25899999999999988652 21
Q ss_pred ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC
Q 006473 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (643)
Q Consensus 181 s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~ 258 (643)
..+..... +.+||+.-...+ ...||++|+.+...+++... + .+.......+..|++.......
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g-------~~~Iy~~dl~~g~~~rlt~~--g-----~~~~~~SPDG~~Ia~~~~~~~~- 342 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG-------YPNIFMKKLNSGSVEQVVFH--G-----KNNSSVSTYKNYIVYSSRETNN- 342 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEeCccC--C-----CcCceECCCCCEEEEEEcCCCc-
Confidence 11111211 446666543211 35899999999888777643 1 1122333335555544432211
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEEC
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (643)
..+....+++.+|+.+..+..+...+ ....-...-+++.++|-.... ....|+.+++
T Consensus 343 -------~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~-----------~~~~L~~~~l 399 (419)
T PRK04043 343 -------EFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG-----------NQSALGIIRL 399 (419)
T ss_pred -------ccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC-----------CcEEEEEEec
Confidence 00112357999999999998886532 111111122555555543221 1346999999
Q ss_pred CCCcEEEeEe
Q 006473 339 DNHRWYPLEL 348 (643)
Q Consensus 339 ~t~~W~~l~~ 348 (643)
..+.=..++.
T Consensus 400 ~g~~~~~l~~ 409 (419)
T PRK04043 400 NYNKSFLFPL 409 (419)
T ss_pred CCCeeEEeec
Confidence 8876555654
No 90
>PRK13684 Ycf48-like protein; Provisional
Probab=91.81 E-value=19 Score=38.33 Aligned_cols=185 Identities=11% Similarity=0.102 Sum_probs=89.1
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCce-eeEEEEECCEEEEEeCccCC
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTS 146 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs-~ha~~~~~~~iyvfGG~~~~ 146 (643)
...-..+++.. .++.|++|-. ..+++=.-.-.+|+.+.... |.... ..++...++..|+.|..
T Consensus 45 ~~~l~~v~F~d--~~~g~avG~~----------G~il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~--- 108 (334)
T PRK13684 45 EANLLDIAFTD--PNHGWLVGSN----------RTLLETNDGGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP--- 108 (334)
T ss_pred CCceEEEEEeC--CCcEEEEECC----------CEEEEEcCCCCCceECccCC-cccccceeeeEEcCCcEEEeCCC---
Confidence 33344455542 4567776641 23444322345899875432 22222 22232335556666521
Q ss_pred CCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
.-+++=.-.-.+|+.+... ...+........+ .+.+|+.|.. ..+++=+-.-.+|+.+.
T Consensus 109 ---------g~i~~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~DgG~tW~~~~ 168 (334)
T PRK13684 109 ---------SLLLHTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATNV----------GAIYRTTDGGKNWEALV 168 (334)
T ss_pred ---------ceEEEECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeecc----------ceEEEECCCCCCceeCc
Confidence 2233322224589988642 1111122223333 4456655532 23444333456899886
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEE-eCCCCeeEEeccCCCCCCCceeeEEEE
Q 006473 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~l~~~g~~P~~R~g~s~~~ 304 (643)
.. . .-+-+.+....+..|+..|..+. ++.. +....+|+.+.. +..+.-+++++
T Consensus 169 ~~-----~-~g~~~~i~~~~~g~~v~~g~~G~----------------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~ 222 (334)
T PRK13684 169 ED-----A-AGVVRNLRRSPDGKYVAVSSRGN----------------FYSTWEPGQTAWTPHQR----NSSRRLQSMGF 222 (334)
T ss_pred CC-----C-cceEEEEEECCCCeEEEEeCCce----------------EEEEcCCCCCeEEEeeC----CCcccceeeeE
Confidence 54 1 22334455554444454444333 2222 344568998854 33445555555
Q ss_pred E-CCeEEEecc
Q 006473 305 H-KKRALLFGG 314 (643)
Q Consensus 305 ~-~~~iyvfGG 314 (643)
. +++++++|.
T Consensus 223 ~~~g~~~~vg~ 233 (334)
T PRK13684 223 QPDGNLWMLAR 233 (334)
T ss_pred cCCCCEEEEec
Confidence 4 678888875
No 91
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.40 E-value=5.5 Score=40.73 Aligned_cols=110 Identities=20% Similarity=0.291 Sum_probs=76.7
Q ss_pred EEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCcc
Q 006473 184 RMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (643)
Q Consensus 184 ~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~ 262 (643)
+..+ .++.||.--|..+ -+.+..||+.+++-...... |..-+|=+++.++++||..--.++.
T Consensus 49 GL~~~~~g~LyESTG~yG-------~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~~d~l~qLTWk~~~----- 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG-------QSSLRKVDLETGKVLQSVPL-----PPRYFGEGITILGDKLYQLTWKEGT----- 111 (264)
T ss_dssp EEEEEETTEEEEEECSTT-------EEEEEEEETTTSSEEEEEE------TTT--EEEEEEETTEEEEEESSSSE-----
T ss_pred cEEecCCCEEEEeCCCCC-------cEEEEEEECCCCcEEEEEEC-----CccccceeEEEECCEEEEEEecCCe-----
Confidence 3344 4789999888765 35788999999987666666 6677888999999999999877655
Q ss_pred CCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
+++||+.+. +.+... +.+.-|-++|..+..+|+--|. +.|+.+||.+-
T Consensus 112 -----------~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f 159 (264)
T PF05096_consen 112 -----------GFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETF 159 (264)
T ss_dssp -----------EEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-
T ss_pred -----------EEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc---------------cceEEECCccc
Confidence 889999764 344332 3345778888888899998884 45999999864
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.32 E-value=7.1 Score=41.13 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=85.0
Q ss_pred CEEEEEcceecCCCCceee-ccEEEEECCCC-----cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceec
Q 006473 82 TELILYGGEFYNGNKTYVY-GDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (643)
Q Consensus 82 ~~lyvfGG~~~~g~~~~~~-ndv~~yd~~~~-----~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~ 155 (643)
..++++|-.+..+...... ..++.|++... +++.+.... .+-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~--~~g~V~ai~~~~~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE--VKGPVTAICSFNGRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE--ESS-EEEEEEETTEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe--ecCcceEhhhhCCEEEEeec-------------
Confidence 5788888776554433333 78999999995 666665433 23335677778999777766
Q ss_pred CeEEEEECCCCc-EEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~-W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
+.+..|++.... +..... ...+-.-.++.+++++|++ |-... .-.++.|+....+-..+... +.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~--~~~~~~i~sl~~~~~~I~v-gD~~~-------sv~~~~~~~~~~~l~~va~d-----~~ 171 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAF--YDSPFYITSLSVFKNYILV-GDAMK-------SVSLLRYDEENNKLILVARD-----YQ 171 (321)
T ss_dssp TEEEEEEEETTSSEEEEEE--E-BSSSEEEEEEETTEEEE-EESSS-------SEEEEEEETTTE-EEEEEEE-----SS
T ss_pred CEEEEEEccCcccchhhhe--ecceEEEEEEeccccEEEE-EEccc-------CEEEEEEEccCCEEEEEEec-----CC
Confidence 356777777777 877766 3333456667777886664 43211 12344567756666666655 55
Q ss_pred CccceeEEEe-CCEEEEEcCC
Q 006473 235 PRSGFQFFVY-QDEVFLYGGY 254 (643)
Q Consensus 235 ~R~~~s~~~~-~~~iyv~GG~ 254 (643)
++...++..+ ++..++.+-.
T Consensus 172 ~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 172 PRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp -BEEEEEEEE-SSSEEEEEET
T ss_pred CccEEEEEEecCCcEEEEEcC
Confidence 6666666666 4444444433
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.26 E-value=18 Score=36.52 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=54.3
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~ 150 (643)
++.+.|. +..+|+.++. .+.+++||+.+.+....-... +.++ .++.. ++.+|+.++.
T Consensus 35 ~l~~~~d-g~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~~-~~~~---~~~~~~~g~~l~~~~~~------- 93 (300)
T TIGR03866 35 GITLSKD-GKLLYVCASD---------SDTIQVIDLATGEVIGTLPSG-PDPE---LFALHPNGKILYIANED------- 93 (300)
T ss_pred ceEECCC-CCEEEEEECC---------CCeEEEEECCCCcEEEeccCC-CCcc---EEEECCCCCEEEEEcCC-------
Confidence 3455542 3456666652 246889999887765421111 1221 22222 4456666542
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.+.+.+||+.+..-...- +.....+.+++. ++.+++++... .+.++.||+.+..
T Consensus 94 ----~~~l~~~d~~~~~~~~~~----~~~~~~~~~~~~~dg~~l~~~~~~--------~~~~~~~d~~~~~ 148 (300)
T TIGR03866 94 ----DNLVTVIDIETRKVLAEI----PVGVEPEGMAVSPDGKIVVNTSET--------TNMAHFIDTKTYE 148 (300)
T ss_pred ----CCeEEEEECCCCeEEeEe----eCCCCcceEEECCCCCEEEEEecC--------CCeEEEEeCCCCe
Confidence 145888998875422111 111111233332 55666665432 1235667876543
No 94
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.16 E-value=3.9 Score=41.85 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=92.0
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEE
Q 006473 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 133 ~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
.++.||.--|..+ -+.+.+||+.+++-..... +|..-.+=+++.++++||..-=. ....+
T Consensus 54 ~~g~LyESTG~yG---------~S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk---------~~~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGLYG---------QSSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK---------EGTGF 113 (264)
T ss_dssp ETTEEEEEECSTT---------EEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEE
T ss_pred CCCEEEEeCCCCC---------cEEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec---------CCeEE
Confidence 4789999888754 2678899999998665544 67777888999999999998432 46789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe---cc
Q 006473 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV---KK 289 (643)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l---~~ 289 (643)
+||+.+. +.+... +.+..|.+++..+..||+--|.+ .++.+||.+.+=.+. ..
T Consensus 114 ~yd~~tl--~~~~~~-----~y~~EGWGLt~dg~~Li~SDGS~-----------------~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF-----PYPGEGWGLTSDGKRLIMSDGSS-----------------RLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEETTTT--EEEEEE-----E-SSS--EEEECSSCEEEE-SSS-----------------EEEEE-TTT-SEEEEEE-EE
T ss_pred EEccccc--eEEEEE-----ecCCcceEEEcCCCEEEEECCcc-----------------ceEEECCcccceEEEEEEEE
Confidence 9999764 455544 45568888888888999988853 488999987643322 11
Q ss_pred CCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 290 ~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.| .|..+ --=+-++++.||.== -..+.|.+.||.++.
T Consensus 170 ~g-~pv~~-LNELE~i~G~IyANV--------------W~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 170 NG-RPVSN-LNELEYINGKIYANV--------------WQTDRIVRIDPETGK 206 (264)
T ss_dssp TT-EE----EEEEEEETTEEEEEE--------------TTSSEEEEEETTT-B
T ss_pred CC-EECCC-cEeEEEEcCEEEEEe--------------CCCCeEEEEeCCCCe
Confidence 11 11111 112333455544311 124668889999875
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.01 E-value=9.8 Score=40.07 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=81.6
Q ss_pred CEEEEEeCccCCCCCCcceec-CeEEEEECCCC-----cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeee
Q 006473 135 NYLYIFGGEFTSPNQERFHHY-KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~-~dv~~yD~~t~-----~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~ 208 (643)
..++++|.....+.. .... ..+..|++... +++.+... +..-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~--~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g----------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGED--PEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG----------- 106 (321)
T ss_dssp SEEEEEEEEE--TTS--SS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET-----------
T ss_pred cCEEEEEeccccccc--ccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec-----------
Confidence 467777754332221 0112 56888888874 56655442 222234567778999666555
Q ss_pred ccEEEEEcCCCc-eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 006473 209 NDLYVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (643)
Q Consensus 209 ~dv~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (643)
+.+++|++.... +...... ..+-...++.++++.|++---+.+. .++.|+....+-..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~-----~~~~~i~sl~~~~~~I~vgD~~~sv---------------~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY-----DSPFYITSLSVFKNYILVGDAMKSV---------------SLLRYDEENNKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE------BSSSEEEEEEETTEEEEEESSSSE---------------EEEEEETTTE-EEEE
T ss_pred CEEEEEEccCcccchhhhee-----cceEEEEEEeccccEEEEEEcccCE---------------EEEEEEccCCEEEEE
Confidence 467788888777 8888776 3344556666778866643333221 255677766667777
Q ss_pred ccCCCCCCCceeeEEEEE-CCeEEEecc
Q 006473 288 KKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (643)
Q Consensus 288 ~~~g~~P~~R~g~s~~~~-~~~iyvfGG 314 (643)
... +.++...++.++ ++. .++++
T Consensus 167 a~d---~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 167 ARD---YQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEE---SS-BEEEEEEEE-SSS-EEEEE
T ss_pred Eec---CCCccEEEEEEecCCc-EEEEE
Confidence 653 457777777777 665 44544
No 96
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.93 E-value=18 Score=41.19 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=90.9
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCC--C-C---CCCceeEEEEECCEEEEEeeeecC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG--C-P---SPRSGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g--~-P---~~Rs~h~~~~~~~~lyvfGG~~~~ 201 (643)
-++.++.||+.... ..|+.+|..|++ |+.-.... . + ........++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---- 128 (527)
T ss_pred CEEECCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----
Confidence 44568899986442 458889988764 87543211 0 1 00112234566788876321
Q ss_pred CCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeC
Q 006473 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (643)
-..|+++|..+.+ |+.-..... .......+.++.++.||+-...... .....++.||.
T Consensus 129 ------dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD~ 188 (527)
T TIGR03075 129 ------DARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYDA 188 (527)
T ss_pred ------CCEEEEEECCCCCEEeeccccccc---ccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEEC
Confidence 2468999998765 765332100 0111222335557777664321111 12235778887
Q ss_pred CCC--eeEEeccCCCC-------------C------C---Ccee----eEEEEE--CCeEEEeccccccc-cCccccccc
Q 006473 280 RTW--EWSKVKKIGMP-------------P------G---PRAG----FSMCVH--KKRALLFGGVVDME-MKGDVIMSL 328 (643)
Q Consensus 280 ~t~--~W~~l~~~g~~-------------P------~---~R~g----~s~~~~--~~~iyvfGG~~~~~-~~~~~~~~~ 328 (643)
.+. .|..-...+.+ | . .|.+ .++++- .+.||+=-|.-.+- .........
T Consensus 189 ~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl 268 (527)
T TIGR03075 189 KTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNL 268 (527)
T ss_pred CCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCc
Confidence 664 56543321110 0 0 1111 233333 35566654441110 001112356
Q ss_pred cCCcEEEEECCCC--cEEEeE
Q 006473 329 FLNELYGFQLDNH--RWYPLE 347 (643)
Q Consensus 329 ~~ndl~~yd~~t~--~W~~l~ 347 (643)
|.+.|.++|++|. +|..-.
T Consensus 269 ~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 269 YTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cceeEEEEccccCCEEEeeeC
Confidence 7889999999987 576433
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.74 E-value=24 Score=37.06 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=7.8
Q ss_pred CeEEEEECCC
Q 006473 156 KDFWMLDLKT 165 (643)
Q Consensus 156 ~dv~~yD~~t 165 (643)
+.+++||+.+
T Consensus 148 ~~v~v~d~~~ 157 (330)
T PRK11028 148 DRIRLFTLSD 157 (330)
T ss_pred CEEEEEEECC
Confidence 5688898876
No 98
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.66 E-value=20 Score=35.97 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCC--C-CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP--N-SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~--~-~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.||+... ..+..+|+.+++++.+... . .+..+.+-.++.-++.||+.--....... .....
T Consensus 51 ~g~l~v~~~-----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADS-----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---IDPGS 116 (246)
T ss_dssp TSEEEEEET-----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---GGSEE
T ss_pred CCEEEEEEc-----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---ccccc
Confidence 577877665 2346679999999977653 1 13444444444447888886422111111 00157
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCC
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP 233 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P 233 (643)
+|++++. .+...+... ..+ -.++++- ++.||+.-- ..+.+|+|++.... +....... ..+
T Consensus 117 v~~~~~~-~~~~~~~~~---~~~-pNGi~~s~dg~~lyv~ds---------~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG---LGF-PNGIAFSPDGKTLYVADS---------FNGRIWRFDLDADGGELSNRRVFI--DFP 180 (246)
T ss_dssp EEEEETT-SEEEEEEEE---ESS-EEEEEEETTSSEEEEEET---------TTTEEEEEEEETTTCCEEEEEEEE--E-S
T ss_pred eEEECCC-CeEEEEecC---ccc-ccceEECCcchheeeccc---------ccceeEEEeccccccceeeeeeEE--EcC
Confidence 9999998 666655431 111 2344443 446777421 24669999986433 43222110 001
Q ss_pred CC-ccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 234 SP-RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 234 ~~-R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
.. ..--.+++. ++.|||..-.. ..|++|++....-..+..
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~~----------------~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWGG----------------GRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEETT----------------TEEEEEETTSCEEEEEE-
T ss_pred CCCcCCCcceEcCCCCEEEEEcCC----------------CEEEEECCCccEEEEEcC
Confidence 11 112234444 78888873322 238999999666666653
No 99
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.11 E-value=0.068 Score=57.24 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=5.9
Q ss_pred Eeecceec
Q 006473 480 ITLDDLYS 487 (643)
Q Consensus 480 ~tl~D~~~ 487 (643)
+|++|+-.
T Consensus 26 lTi~Dtlk 33 (458)
T PF10446_consen 26 LTINDTLK 33 (458)
T ss_pred ccHHHHHH
Confidence 78898743
No 100
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.98 E-value=33 Score=37.86 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=85.4
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
.++|++|+.+++=+.+... + .........-++ +|++.-...+ ..++|.+|+.+..++++...+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~dl~~g~~~~LT~~~~----- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPKG-------QPDIYLYDTNTKTLTQITNYPG----- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecC--C-CcEEeeEECCCCCEEEEEEccCC-------CcEEEEEECCCCcEEEcccCCC-----
Confidence 4799999998877666531 1 111111112233 5554433211 3689999999999988876521
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecc
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG 314 (643)
.-........+..||+.-...+ ..++|++|+.+....++...+. ..... .-+++.++|-.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~-SPDG~~Ia~~~ 337 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSGSVEQVVFHGK-----NNSSV-STYKNYIVYSS 337 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEeCccCCC-----cCceE-CCCCCEEEEEE
Confidence 1111223333556777654322 2479999999888877754322 12222 22444444433
Q ss_pred ccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
...... .+....+|+++|+.+..+..|..
T Consensus 338 ~~~~~~-----~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 338 RETNNE-----FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred cCCCcc-----cCCCCcEEEEEECCCCCeEECCC
Confidence 221100 01123579999999999888775
No 101
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.77 E-value=34 Score=37.28 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=84.9
Q ss_pred CeEEEEECCCC-----cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc---eEEeccC
Q 006473 156 KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPR 227 (643)
Q Consensus 156 ~dv~~yD~~t~-----~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~ 227 (643)
+++|.+++... .|..+.. +..-..+.+...++.+|+...... ....|..+++.... |..+-..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~~~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGDRLYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCCEEEEeeCCCC------CCcEEEEecccccccccceeEEcC
Confidence 78999999875 7888765 222223334455889998866321 24578888888765 6643332
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC-CCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 228 ~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
+ .....--.+.+.++.|+|.-=.+ ....+.+|++. +..-..+.. |. .+....+.
T Consensus 323 ~----~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~ 378 (414)
T PF02897_consen 323 E----DEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVSG 378 (414)
T ss_dssp -----SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEES
T ss_pred C----CCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCCCcEEeeecC----Cc--ceEEeccCC
Confidence 0 22234445555688888775332 34678899988 433333332 22 22211121
Q ss_pred ---CCe-EEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 306 ---KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 306 ---~~~-iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.+. .|.+.+... ...+|.||+.+++...+..
T Consensus 379 ~~~~~~~~~~~ss~~~------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 379 DFDSDELRFSYSSFTT------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp -TT-SEEEEEEEETTE------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCCCEEEEEEeCCCC------------CCEEEEEECCCCCEEEEEe
Confidence 233 444555543 4579999999998887753
No 102
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.19 E-value=24 Score=35.98 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=97.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
.+++|++.|. .+..-..+..+..| ...+.+...- .+|-+-.|...+++++.+|..-. -.+.+.+
T Consensus 30 ~~~iy~~~~~--~~~~v~ey~~~~~f-~~~~~~~~~~--~Lp~~~~GtG~vVYngslYY~~~-----------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGF--SGNTVYEYRNYEDF-LRNGRSSRTY--KLPYPWQGTGHVVYNGSLYYNKY-----------NSRNIVK 93 (250)
T ss_pred CCCEEEECcc--CCCEEEEEcCHhHH-hhcCCCceEE--EEeceeccCCeEEECCcEEEEec-----------CCceEEE
Confidence 5789999884 22221222222222 1111111111 13444556666677887777633 1478999
Q ss_pred EECCCCcEE---EeccCCC----CCCCcee---EEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC----CceEEecc
Q 006473 161 LDLKTNQWE---QLNLKGC----PSPRSGH---RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKP 226 (643)
Q Consensus 161 yD~~t~~W~---~~~~~g~----P~~Rs~h---~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~ 226 (643)
||+.++.-. .++..+. |-...++ -.++-.+-|+|+-....... .--|-.+|+.+ .+|..-
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~-- 167 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS-- 167 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEEEec--
Confidence 999998654 3332111 1111111 22333556777755433211 12344456654 345532
Q ss_pred CCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-
Q 006473 227 RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (643)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~- 305 (643)
. +.+..+.++++| |.||++-..... ...-.+.||+.+++=..+... .+.+-..+++.-.
T Consensus 168 ~-----~k~~~~naFmvC-GvLY~~~s~~~~------------~~~I~yafDt~t~~~~~~~i~--f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 168 Y-----PKRSAGNAFMVC-GVLYATDSYDTR------------DTEIFYAFDTYTGKEEDVSIP--FPNPYGNISMLSYN 227 (250)
T ss_pred c-----CchhhcceeeEe-eEEEEEEECCCC------------CcEEEEEEECCCCceeceeee--eccccCceEeeeEC
Confidence 1 444455544444 678888766543 134468999988766554321 2334445555555
Q ss_pred --CCeEEEec
Q 006473 306 --KKRALLFG 313 (643)
Q Consensus 306 --~~~iyvfG 313 (643)
+.+||++-
T Consensus 228 P~dk~LY~wd 237 (250)
T PF02191_consen 228 PRDKKLYAWD 237 (250)
T ss_pred CCCCeEEEEE
Confidence 47788875
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.88 E-value=41 Score=36.96 Aligned_cols=174 Identities=16% Similarity=0.222 Sum_probs=87.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEec-CCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~-s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++.++++|+- +. -+-.+|..+..- ++. ++.----|++ ++...+++|++.||++. .+-
T Consensus 122 d~t~l~s~sD---d~------v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg-----------~vr 179 (487)
T KOG0310|consen 122 DNTMLVSGSD---DK------VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDG-----------KVR 179 (487)
T ss_pred CCeEEEecCC---Cc------eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCc-----------eEE
Confidence 6899999983 21 122334444432 211 1111122333 23344788999999754 355
Q ss_pred EEECCCC-cEEEeccCCCCCCCceeEEEEE-C-CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 160 MLDLKTN-QWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 160 ~yD~~t~-~W~~~~~~g~P~~Rs~h~~~~~-~-~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
.||+.+. .|..--.-+.|.. .++.+ + ..|...|| |.+-++|+.++. +.+..+ .....
T Consensus 180 l~DtR~~~~~v~elnhg~pVe----~vl~lpsgs~iasAgG-----------n~vkVWDl~~G~-qll~~~----~~H~K 239 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVE----SVLALPSGSLIASAGG-----------NSVKVWDLTTGG-QLLTSM----FNHNK 239 (487)
T ss_pred EEEeccCCceeEEecCCCcee----eEEEcCCCCEEEEcCC-----------CeEEEEEecCCc-eehhhh----hcccc
Confidence 6777665 5543322222322 12333 3 45555555 457777776442 111111 01111
Q ss_pred cceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEEecc
Q 006473 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGG 314 (643)
Q Consensus 237 ~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyvfGG 314 (643)
.--|+... ++.-++-||.++. +-+|| +..|..+..+.. |.|-. ++++ .++.-+++|+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~----------------VKVfd--~t~~Kvv~s~~~-~~pvL--siavs~dd~t~viGm 298 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRH----------------VKVFD--TTNYKVVHSWKY-PGPVL--SIAVSPDDQTVVIGM 298 (487)
T ss_pred eEEEEEeecCCceEeecccccc----------------eEEEE--ccceEEEEeeec-cccee--eEEecCCCceEEEec
Confidence 11122222 5577788888776 66787 345666655433 33332 3333 3788888888
Q ss_pred ccc
Q 006473 315 VVD 317 (643)
Q Consensus 315 ~~~ 317 (643)
.++
T Consensus 299 snG 301 (487)
T KOG0310|consen 299 SNG 301 (487)
T ss_pred ccc
Confidence 765
No 104
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.38 E-value=41 Score=40.33 Aligned_cols=131 Identities=10% Similarity=0.010 Sum_probs=62.8
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..+.+||+.+++....-. ... ..-.+++.. ++.+++.||.+ ..+.+||+.+..- +..... .
T Consensus 555 g~v~lWd~~~~~~~~~~~--~H~-~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~--~~~~~~---~ 617 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK--EHE-KRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVS--IGTIKT---K 617 (793)
T ss_pred CeEEEEECCCCeEEEEec--CCC-CCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcE--EEEEec---C
Confidence 357788887664322111 111 111223332 45677777753 3477788765432 111100 1
Q ss_pred CCccceeEEE--eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEECCeE
Q 006473 234 SPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRA 309 (643)
Q Consensus 234 ~~R~~~s~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~~~i 309 (643)
.. ..++.. .++.+++.|+.++. +.+||+.+.. ...+. +. ...-..+.+.++..
T Consensus 618 ~~--v~~v~~~~~~g~~latgs~dg~----------------I~iwD~~~~~~~~~~~~--~h---~~~V~~v~f~~~~~ 674 (793)
T PLN00181 618 AN--ICCVQFPSESGRSLAFGSADHK----------------VYYYDLRNPKLPLCTMI--GH---SKTVSYVRFVDSST 674 (793)
T ss_pred CC--eEEEEEeCCCCCEEEEEeCCCe----------------EEEEECCCCCccceEec--CC---CCCEEEEEEeCCCE
Confidence 11 111221 25678888877654 7888876532 11121 11 11112333346666
Q ss_pred EEeccccccccCccccccccCCcEEEEECCC
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
++.|+.. +.|.+||+..
T Consensus 675 lvs~s~D--------------~~ikiWd~~~ 691 (793)
T PLN00181 675 LVSSSTD--------------NTLKLWDLSM 691 (793)
T ss_pred EEEEECC--------------CEEEEEeCCC
Confidence 6666643 3477888754
No 105
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.27 E-value=25 Score=38.01 Aligned_cols=209 Identities=14% Similarity=0.200 Sum_probs=97.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~ 160 (643)
++.-+||+|. +++. ..+|.+|+.+.+-.+|+... .....+..++.-+..||.+-. ...++.
T Consensus 46 dG~kllF~s~-~dg~-----~nly~lDL~t~~i~QLTdg~-g~~~~g~~~s~~~~~~~Yv~~------------~~~l~~ 106 (386)
T PF14583_consen 46 DGRKLLFASD-FDGN-----RNLYLLDLATGEITQLTDGP-GDNTFGGFLSPDDRALYYVKN------------GRSLRR 106 (386)
T ss_dssp TS-EEEEEE--TTSS------EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEET------------TTEEEE
T ss_pred CCCEEEEEec-cCCC-----cceEEEEcccCEEEECccCC-CCCccceEEecCCCeEEEEEC------------CCeEEE
Confidence 5677778775 3443 47899999999999998753 122333333333566554431 146899
Q ss_pred EECCCCcEEEeccCCCCCCCceeEEEEEC--CEEEEEeeeecCC------C---------ceeeeccEEEEEcCCCceEE
Q 006473 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTL------R---------EVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 161 yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~--~~lyvfGG~~~~~------~---------~~~~~~dv~~yD~~t~~W~~ 223 (643)
+|+.|.+=+.+-. .|..-.+....+.+ ... ++ |..... . ..+..+.+...|+.+...+.
T Consensus 107 vdL~T~e~~~vy~--~p~~~~g~gt~v~n~d~t~-~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 107 VDLDTLEERVVYE--VPDDWKGYGTWVANSDCTK-LV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EETTT--EEEEEE----TTEEEEEEEEE-TTSSE-EE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EECCcCcEEEEEE--CCcccccccceeeCCCccE-EE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 9999987666554 35444443333332 222 22 221100 0 02235678888998888777
Q ss_pred eccCCCCCCCCCccceeEEEeCCEEEEE---cCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee
Q 006473 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLY---GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~iyv~---GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~ 300 (643)
+-.. ..-.....+.+.+..+++| |.... +...||..+.......++... .+.-.++|
T Consensus 183 v~~~-----~~wlgH~~fsP~dp~li~fCHEGpw~~-------------Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gH 242 (386)
T PF14583_consen 183 VFED-----TDWLGHVQFSPTDPTLIMFCHEGPWDL-------------VDQRIWTINTDGSNVKKVHRR--MEGESVGH 242 (386)
T ss_dssp EEEE-----SS-EEEEEEETTEEEEEEEEE-S-TTT-------------SS-SEEEEETTS---EESS-----TTEEEEE
T ss_pred EEec-----CccccCcccCCCCCCEEEEeccCCcce-------------eceEEEEEEcCCCcceeeecC--CCCccccc
Confidence 7554 2222222333446677777 44432 334689999877776666542 24455666
Q ss_pred EEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 301 s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
=.-+.+|..+.|=+..... . ---|..||+.|.
T Consensus 243 Efw~~DG~~i~y~~~~~~~-------~--~~~i~~~d~~t~ 274 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGG-------Q--DFWIAGYDPDTG 274 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT-----------EEEEEE-TTT-
T ss_pred ccccCCCCEEEEEeecCCC-------C--ceEEEeeCCCCC
Confidence 5555566655553332211 0 112777888764
No 106
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.24 E-value=12 Score=38.29 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=93.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
.++||++.|..... ...+..+..| ...+.+...-. +|.+-.|.+.+++++.||..-. -.+.|.+
T Consensus 30 ~~~iy~~~~~~~~~----v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~---------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGFSGNT----VYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKY---------NSRNIVK 93 (250)
T ss_pred CCCEEEECccCCCE----EEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEec---------CCceEEE
Confidence 45788887754321 1122222222 12222222222 4677778888999999887543 1678999
Q ss_pred EEcCCCceEEeccCCCCC----CCCCccc---eeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC----
Q 006473 214 FDLDQFKWQEIKPRFGSM----WPSPRSG---FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---- 282 (643)
Q Consensus 214 yD~~t~~W~~v~~~~~~~----~P~~R~~---~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---- 282 (643)
||+.+..-.....+|.+. .|....+ .-+++-++.|+|+=..... .+ .--+-.+|+.+.
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---------~g--~ivvskld~~tL~v~~ 162 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---------NG--NIVVSKLDPETLSVEQ 162 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---------CC--cEEEEeeCcccCceEE
Confidence 999988765222222111 1222222 2334457778777554432 01 112345666554
Q ss_pred eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 283 EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 283 ~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+|..- .+.+ .-..+.++-|.||++....... ..-.++||+.+++=..+.+
T Consensus 163 tw~T~-----~~k~-~~~naFmvCGvLY~~~s~~~~~----------~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 163 TWNTS-----YPKR-SAGNAFMVCGVLYATDSYDTRD----------TEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEEec-----cCch-hhcceeeEeeEEEEEEECCCCC----------cEEEEEEECCCCceeceee
Confidence 45432 1222 2334667789999988765321 2336899999887666555
No 107
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=87.92 E-value=81 Score=39.25 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=84.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC-----------CCCceeEEEEE--CCEEEEEeeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-----------SPRSGHRMVLY--KHKIIVFGGFYD 200 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P-----------~~Rs~h~~~~~--~~~lyvfGG~~~ 200 (643)
++.|||.... .+.+|+||+.++....+...+.. ....-+++++. ++.|||.-..
T Consensus 694 ~g~LyVad~~-----------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred CCeEEEEECC-----------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 5778887532 25689999887766544322210 00111233333 3468886542
Q ss_pred CCCceeeeccEEEEEcCCCceEEeccCC----C---------CCCCCCccc--eeEEEe-CCEEEEEcCCCCCCCCccCC
Q 006473 201 TLREVRYYNDLYVFDLDQFKWQEIKPRF----G---------SMWPSPRSG--FQFFVY-QDEVFLYGGYSKEVSTDKNQ 264 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~~----~---------~~~P~~R~~--~s~~~~-~~~iyv~GG~~~~~~~~~~~ 264 (643)
.+.|.+||+.++....+.... . +........ .++++. ++.|||.-..+..
T Consensus 761 -------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r------- 826 (1057)
T PLN02919 761 -------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK------- 826 (1057)
T ss_pred -------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-------
Confidence 467999998876543222100 0 000000000 122333 5678887765443
Q ss_pred CCCCceeeeEEEEeCCCCeeEEeccCCCC-------CCCc--eeeEEEEE-CCeEEEeccccccccCccccccccCCcEE
Q 006473 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMP-------PGPR--AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~-------P~~R--~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
+.+||+.+.....+...|.. .... .-+++++. ++++||.-.. .+.|.
T Consensus 827 ---------IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Ir 883 (1057)
T PLN02919 827 ---------IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIR 883 (1057)
T ss_pred ---------EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEE
Confidence 88999988877766543321 0011 11234443 5788887543 35688
Q ss_pred EEECCCCc
Q 006473 335 GFQLDNHR 342 (643)
Q Consensus 335 ~yd~~t~~ 342 (643)
++|+.+.+
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998875
No 108
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.74 E-value=33 Score=38.59 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=63.5
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCC-C-CCC-CceeEEEEEC-CEEEEEeeeecCCC
Q 006473 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG-C-PSP-RSGHRMVLYK-HKIIVFGGFYDTLR 203 (643)
Q Consensus 130 ~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g-~-P~~-Rs~h~~~~~~-~~lyvfGG~~~~~~ 203 (643)
-++.++.||+.... ..++.+|..+.+ |+.-.... . ..+ ......++.+ ++||+...
T Consensus 57 Pvv~~g~vy~~~~~------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------ 118 (488)
T cd00216 57 PLVVDGDMYFTTSH------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------ 118 (488)
T ss_pred CEEECCEEEEeCCC------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------
Confidence 35668899886542 357888988764 87643211 0 000 0111234456 77776322
Q ss_pred ceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC
Q 006473 204 EVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (643)
Q Consensus 204 ~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (643)
...|+.+|..+.+ |+.-..... .+......+.++.++.+| +|....... .......+++||..+
T Consensus 119 ----~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~~~~v~-vg~~~~~~~-------~~~~~g~v~alD~~T 184 (488)
T cd00216 119 ----DGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIVKKLVI-IGSSGAEFF-------ACGVRGALRAYDVET 184 (488)
T ss_pred ----CCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEECCEEE-Eeccccccc-------cCCCCcEEEEEECCC
Confidence 2468899987654 775433210 001111223344565555 443222100 001234689999865
Q ss_pred C--eeEEe
Q 006473 282 W--EWSKV 287 (643)
Q Consensus 282 ~--~W~~l 287 (643)
. .|..-
T Consensus 185 G~~~W~~~ 192 (488)
T cd00216 185 GKLLWRFY 192 (488)
T ss_pred CceeeEee
Confidence 4 68754
No 109
>PRK01742 tolB translocation protein TolB; Provisional
Probab=87.11 E-value=51 Score=36.30 Aligned_cols=139 Identities=10% Similarity=0.102 Sum_probs=69.5
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (643)
..+|++|+.++.-+.+.. .+. ... ...+ ++..++++...+. ..++|.+|+.+.....+... .
T Consensus 228 ~~i~i~dl~tg~~~~l~~--~~g-~~~--~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~~-----~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS--FRG-HNG--APAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTSG-----A 291 (429)
T ss_pred cEEEEEeCCCCceEEEec--CCC-ccC--ceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeeccC-----C
Confidence 468999998877666543 121 111 1233 4444444432111 23589999988776666443 1
Q ss_pred CCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEe
Q 006473 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (643)
Q Consensus 234 ~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvf 312 (643)
..-...+....+..|++.....+. ..+|.++..+..-..+.. .. +...+. +++.+++
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g~--------------~~I~~~~~~~~~~~~l~~-----~~---~~~~~SpDG~~ia~ 349 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSGS--------------PQVYRMSASGGGASLVGG-----RG---YSAQISADGKTLVM 349 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCeEEecC-----CC---CCccCCCCCCEEEE
Confidence 111222222223445544332222 368888876554333311 11 112222 4444444
Q ss_pred ccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
.+. +.++.+|+.+..+..+.
T Consensus 350 ~~~---------------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 350 ING---------------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred EcC---------------CCEEEEECCCCCeEEec
Confidence 432 24788999998887654
No 110
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.68 E-value=52 Score=35.80 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=85.2
Q ss_pred eccEEEEECCCC-----cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc---EEEe
Q 006473 100 YGDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQL 171 (643)
Q Consensus 100 ~ndv~~yd~~~~-----~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~---W~~~ 171 (643)
.+.+|.++.... .|+.+... ..-..+.+...++.+||....... ...+..+++.+.. |..+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~---~~~~~~~v~~~~~~~yi~Tn~~a~--------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR---EDGVEYYVDHHGDRLYILTNDDAP--------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES---SSS-EEEEEEETTEEEEEE-TT-T--------T-EEEEEETTSTSGGGEEEE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC---CCceEEEEEccCCEEEEeeCCCCC--------CcEEEEecccccccccceeE
Confidence 378999999875 89988542 222334444558999998764332 2467888988775 7643
Q ss_pred ccCCCCCC-CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC-CCceEEeccCCCCCCCCCccceeEEEe---CC
Q 006473 172 NLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFFVY---QD 246 (643)
Q Consensus 172 ~~~g~P~~-Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~P~~R~~~s~~~~---~~ 246 (643)
-. .+.. ..--.+...+++|++..=.+ ....|.+|++. ...-..++.+ .. ........ .+
T Consensus 320 l~--~~~~~~~l~~~~~~~~~Lvl~~~~~-------~~~~l~v~~~~~~~~~~~~~~p------~~-g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 320 LI--PEDEDVSLEDVSLFKDYLVLSYREN-------GSSRLRVYDLDDGKESREIPLP------EA-GSVSGVSGDFDSD 383 (414)
T ss_dssp EE----SSSEEEEEEEEETTEEEEEEEET-------TEEEEEEEETT-TEEEEEEESS------SS-SEEEEEES-TT-S
T ss_pred Ec--CCCCceeEEEEEEECCEEEEEEEEC-------CccEEEEEECCCCcEEeeecCC------cc-eEEeccCCCCCCC
Confidence 22 1223 23445556689988775432 25789999998 3333333322 11 11111111 33
Q ss_pred E-EEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 247 E-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 247 ~-iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
. .|.+.+. ..-..+|.||+.+++.+.++
T Consensus 384 ~~~~~~ss~--------------~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 384 ELRFSYSSF--------------TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEET--------------TEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEEeCC--------------CCCCEEEEEECCCCCEEEEE
Confidence 3 4444444 34567999999999888775
No 111
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.23 E-value=32 Score=36.68 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=87.3
Q ss_pred CCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCC---CCceeeEEEEE-CCEEEEEeC
Q 006473 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP---PPRSAHQAVSW-KNYLYIFGG 142 (643)
Q Consensus 69 R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P---~pRs~ha~~~~-~~~iyvfGG 142 (643)
-..|.+.+.|. +..||+..= | .+.|++|+..... .........| .|| |.+..- +..+||..-
T Consensus 144 ~h~H~v~~~pd-g~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 144 PHPHQVVFSPD-GRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TCEEEEEE-TT-SSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEET
T ss_pred ccceeEEECCC-CCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecC
Confidence 34577777773 355666421 2 2578888887765 5432211111 233 333322 568999875
Q ss_pred ccCCCCCCcceecCeEEEEECC--CCcEEEeccCC-CCC---CC-ceeEEEEE--CCEEEEEeeeecCCCceeeeccEEE
Q 006473 143 EFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKG-CPS---PR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~--t~~W~~~~~~g-~P~---~R-s~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
. .+.|.+|+.. +..|+.+.... +|. .. ..+.+++. +++||+--. -.+.|.+
T Consensus 212 ~-----------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr---------~~~sI~v 271 (345)
T PF10282_consen 212 L-----------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR---------GSNSISV 271 (345)
T ss_dssp T-----------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC---------TTTEEEE
T ss_pred C-----------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec---------cCCEEEE
Confidence 3 2445555444 66666554321 222 12 23333333 567887532 2567888
Q ss_pred EEc--CCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 214 FDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 214 yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
|++ .+.+-+.+...+.+ ...||. +.+...+..|||.+..+.. -.++..|..+..+..+..
T Consensus 272 f~~d~~~g~l~~~~~~~~~-G~~Pr~-~~~s~~g~~l~Va~~~s~~--------------v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTG-GKFPRH-FAFSPDGRYLYVANQDSNT--------------VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEECTTTTTEEEEEEEEES-SSSEEE-EEE-TTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCceEEEEEEeCC-CCCccE-EEEeCCCCEEEEEecCCCe--------------EEEEEEeCCCCcEEEecc
Confidence 877 44566555544211 123443 2222336667765544332 235556778889988864
No 112
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.52 E-value=89 Score=37.33 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=34.0
Q ss_pred CceeeeEEEEeCCCC--eeEEeccCC-----CCCCCceeeEEEEECCe---EEEeccccccccCccccccccCCcEEEEE
Q 006473 268 GIIHSDLWSLDPRTW--EWSKVKKIG-----MPPGPRAGFSMCVHKKR---ALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 268 ~~~~~dv~~yd~~t~--~W~~l~~~g-----~~P~~R~g~s~~~~~~~---iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
..+.+.+..+|+.|. .|..-.... ..|..-.-..+...+++ +++.+..+ ..+|+||
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~--------------G~~~vlD 475 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQ--------------GQIYVLD 475 (764)
T ss_pred ccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCC--------------CEEEEEE
Confidence 356788999998765 687654211 12222222222222442 55555543 3589999
Q ss_pred CCCCc
Q 006473 338 LDNHR 342 (643)
Q Consensus 338 ~~t~~ 342 (643)
..|.+
T Consensus 476 r~tG~ 480 (764)
T TIGR03074 476 RRTGE 480 (764)
T ss_pred CCCCC
Confidence 98874
No 113
>PTZ00421 coronin; Provisional
Probab=85.17 E-value=72 Score=36.01 Aligned_cols=62 Identities=6% Similarity=-0.045 Sum_probs=33.7
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~ 212 (643)
+.+++.||.. ..+.+||+.+.+-...-. +.... -..+.+ ++.+++.|+.+ ..+.
T Consensus 138 ~~iLaSgs~D-----------gtVrIWDl~tg~~~~~l~-~h~~~---V~sla~spdG~lLatgs~D---------g~Ir 193 (493)
T PTZ00421 138 MNVLASAGAD-----------MVVNVWDVERGKAVEVIK-CHSDQ---ITSLEWNLDGSLLCTTSKD---------KKLN 193 (493)
T ss_pred CCEEEEEeCC-----------CEEEEEECCCCeEEEEEc-CCCCc---eEEEEEECCCCEEEEecCC---------CEEE
Confidence 4577777642 357788887765322111 01111 112222 56677777753 3577
Q ss_pred EEEcCCCc
Q 006473 213 VFDLDQFK 220 (643)
Q Consensus 213 ~yD~~t~~ 220 (643)
+||+.+..
T Consensus 194 IwD~rsg~ 201 (493)
T PTZ00421 194 IIDPRDGT 201 (493)
T ss_pred EEECCCCc
Confidence 89988764
No 114
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.94 E-value=31 Score=34.76 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=53.0
Q ss_pred CCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCc
Q 006473 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGE 143 (643)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~ 143 (643)
.|.|-.+. +.++|. .|.|++.||. .-+|+.|+.+++.+..--+. .-+-|+++.- .+.-++.|++
T Consensus 112 ~evPeINa-m~ldP~-enSi~~AgGD----------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 112 VEVPEINA-MWLDPS-ENSILFAGGD----------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred ccCCccce-eEeccC-CCcEEEecCC----------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccCcceeecCC
Confidence 44455554 555654 5899999983 36899999999888664432 3466777664 3344566776
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEe
Q 006473 144 FTSPNQERFHHYKDFWMLDLKTNQWEQL 171 (643)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~ 171 (643)
++ .+-++|++|.+-.++
T Consensus 177 DG-----------tvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 177 DG-----------TVRVWDTKTQKHVSM 193 (325)
T ss_pred Cc-----------cEEEEeccccceeEE
Confidence 54 356788888776544
No 115
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.50 E-value=22 Score=31.99 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=59.7
Q ss_pred EEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCC
Q 006473 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (643)
Q Consensus 186 ~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~ 265 (643)
++++|-||-..-.. ....+.+.+||+.+.+|+.+..+ ...........++.++|+|.++.-....
T Consensus 2 icinGvly~~a~~~-----~~~~~~IvsFDv~~E~f~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~~~~~-------- 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSE-----DSDNNVIVSFDVRSEKFRFIKLP--EDPYSSDCSSTLIEYKGKLALVSYNDQG-------- 66 (129)
T ss_pred EEECcEEEeEEEEC-----CCCCcEEEEEEcCCceEEEEEee--eeeccccCccEEEEeCCeEEEEEecCCC--------
Confidence 46788888776551 12357899999999999988774 1123455666777789998887654432
Q ss_pred CCCceeeeEEEEe-CCCCeeEEecc
Q 006473 266 EKGIIHSDLWSLD-PRTWEWSKVKK 289 (643)
Q Consensus 266 ~~~~~~~dv~~yd-~~t~~W~~l~~ 289 (643)
....-++|+++ .....|++...
T Consensus 67 --~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 67 --EPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred --CcceEEEEEeeccccceEEEEEE
Confidence 02346799995 66789998744
No 116
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.33 E-value=56 Score=34.02 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=59.0
Q ss_pred eeccEEEEECCCCcEEEecCCCCCCCceeeEEEE------ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEec
Q 006473 99 VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS------WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (643)
Q Consensus 99 ~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~------~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~ 172 (643)
-++.|+.||+.+++-+.+=.-..-.++.-..=++ +++.||+.-+-. +..--+|.+|..++.-+.+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG--------h~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG--------HANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC--------cceeeeEEEcccCCceeecc
Confidence 4678999999998744331111112222222221 157787765421 12346999999999988887
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCce
Q 006473 173 LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (643)
Q Consensus 173 ~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W 221 (643)
. .|++. .+.+.+..+| |...- ..-.+.+.+||+.+++|
T Consensus 148 ~--~ps~K---G~~~~D~a~F---~i~~~---~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 148 S--NPSLK---GTLVHDYACF---GINNF---HKGVSGIHCLDLISGKW 185 (339)
T ss_pred C--CCCcC---ceEeeeeEEE---ecccc---ccCCceEEEEEccCCeE
Confidence 6 34432 2222232233 22111 12367899999999999
No 117
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.21 E-value=70 Score=35.19 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=67.8
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC-cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
+++|+..|+. ...+-+||..+. --+.+.....|. ..-..+..++.++++|+-.. -+-
T Consensus 79 DG~LlaaGD~---------sG~V~vfD~k~r~iLR~~~ah~apv--~~~~f~~~d~t~l~s~sDd~-----------v~k 136 (487)
T KOG0310|consen 79 DGRLLAAGDE---------SGHVKVFDMKSRVILRQLYAHQAPV--HVTKFSPQDNTMLVSGSDDK-----------VVK 136 (487)
T ss_pred CCeEEEccCC---------cCcEEEeccccHHHHHHHhhccCce--eEEEecccCCeEEEecCCCc-----------eEE
Confidence 6889999884 356778884441 122222222222 22223345889999987432 122
Q ss_pred EEECCCCcEEEeccCCCC-CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P-~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
.+|+.+.. ......+.. .-|.+ .+.-.++.|++-||+++ .+-.||+.+.+ ..+.....+ .|...
T Consensus 137 ~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg---------~vrl~DtR~~~-~~v~elnhg---~pVe~ 201 (487)
T KOG0310|consen 137 YWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDG---------KVRLWDTRSLT-SRVVELNHG---CPVES 201 (487)
T ss_pred EEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCc---------eEEEEEeccCC-ceeEEecCC---Cceee
Confidence 34444433 232322211 12222 23334788999999864 35567776653 222222221 22222
Q ss_pred eeEEEeCCEEEEEcCCC
Q 006473 239 FQFFVYQDEVFLYGGYS 255 (643)
Q Consensus 239 ~s~~~~~~~iyv~GG~~ 255 (643)
-.+...+..|...||..
T Consensus 202 vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 202 VLALPSGSLIASAGGNS 218 (487)
T ss_pred EEEcCCCCEEEEcCCCe
Confidence 22222245666666643
No 118
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.10 E-value=81 Score=37.84 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=32.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEE-EeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeec
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~ 209 (643)
++.+++.||.. ..+.+||+.+..-. .+.. . ....++.+ ++.++++|+.+ .
T Consensus 587 ~~~~L~Sgs~D-----------g~v~iWd~~~~~~~~~~~~---~---~~v~~v~~~~~~g~~latgs~d---------g 640 (793)
T PLN00181 587 DPTLLASGSDD-----------GSVKLWSINQGVSIGTIKT---K---ANICCVQFPSESGRSLAFGSAD---------H 640 (793)
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCcEEEEEec---C---CCeEEEEEeCCCCCEEEEEeCC---------C
Confidence 45677777753 34777887654322 2211 1 11122222 46677777642 4
Q ss_pred cEEEEEcCCC
Q 006473 210 DLYVFDLDQF 219 (643)
Q Consensus 210 dv~~yD~~t~ 219 (643)
.+.+||+.+.
T Consensus 641 ~I~iwD~~~~ 650 (793)
T PLN00181 641 KVYYYDLRNP 650 (793)
T ss_pred eEEEEECCCC
Confidence 6888998654
No 119
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.00 E-value=71 Score=34.98 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=61.4
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCC--CCCc-eeeEEEEECCEEEEEeCccCC
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--PPPR-SAHQAVSWKNYLYIFGGEFTS 146 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~--P~pR-s~ha~~~~~~~iyvfGG~~~~ 146 (643)
.-..+.+.|...++.|++|-. ..|+.-+-.-.+|.....+.. +..+ ...++...++.+|++|-.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~----------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTR----------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCC----------CEEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---
Confidence 344555533235688888872 233433334568997643211 1111 234444457788887531
Q ss_pred CCCCcceecCeEEEEECCCCcEEEeccCC-CCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEe
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g-~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
.-+++=.-.-.+|+.+.... +|.. .+..+.+ .+.++++|.. ..+++-+-.-.+|+.+
T Consensus 156 ---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 156 ---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEEEECCCCCCceEc
Confidence 12223233356899886521 1222 2333334 4567777642 2244444445689987
Q ss_pred c
Q 006473 225 K 225 (643)
Q Consensus 225 ~ 225 (643)
.
T Consensus 215 ~ 215 (398)
T PLN00033 215 V 215 (398)
T ss_pred c
Confidence 3
No 120
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=83.60 E-value=0.77 Score=45.84 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=9.1
Q ss_pred ceeEEEEECCEEEEEeee
Q 006473 181 SGHRMVLYKHKIIVFGGF 198 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~ 198 (643)
....++.....++-.||.
T Consensus 124 ~da~C~EC~R~vw~hGGr 141 (314)
T PF06524_consen 124 QDAVCIECERGVWDHGGR 141 (314)
T ss_pred CCcEeeeeecccccCCCe
Confidence 333444445556666664
No 121
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.51 E-value=58 Score=33.58 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=102.2
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
-+-++++++.+-+..+-+. -.+-.+.-..++ .+.|+..|-. . ++. ++|+.++.-+..+. |..
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~-G--------~yG---rLdPa~~~i~vfpa---PqG 188 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQI-G--------AYG---RLDPARNVISVFPA---PQG 188 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeecc-c--------cce---ecCcccCceeeecc---CCC
Confidence 6788999888877665321 112222223333 3566666532 1 112 67777776555433 222
Q ss_pred CceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC
Q 006473 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (643)
Q Consensus 180 Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~ 258 (643)
-.-.++|+ -++.+|+--= +-|-+-+.|+.+..=..++.+. ......|. ..+--.+.+++.--.
T Consensus 189 ~gpyGi~atpdGsvwyasl---------agnaiaridp~~~~aev~p~P~-~~~~gsRr--iwsdpig~~wittwg---- 252 (353)
T COG4257 189 GGPYGICATPDGSVWYASL---------AGNAIARIDPFAGHAEVVPQPN-ALKAGSRR--IWSDPIGRAWITTWG---- 252 (353)
T ss_pred CCCcceEECCCCcEEEEec---------cccceEEcccccCCcceecCCC-cccccccc--cccCccCcEEEeccC----
Confidence 22223333 4777776411 1345667777776444444321 10011111 001114566665221
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
...+++|||.+..|..-+-++.- +| ..+|-+. .+++++--- -.+.|.+||
T Consensus 253 ------------~g~l~rfdPs~~sW~eypLPgs~--ar-pys~rVD~~grVW~sea--------------~agai~rfd 303 (353)
T COG4257 253 ------------TGSLHRFDPSVTSWIEYPLPGSK--AR-PYSMRVDRHGRVWLSEA--------------DAGAIGRFD 303 (353)
T ss_pred ------------CceeeEeCcccccceeeeCCCCC--CC-cceeeeccCCcEEeecc--------------ccCceeecC
Confidence 23488999999999988654332 23 2344443 456655211 146699999
Q ss_pred CCCCcEEEeEecCCCc
Q 006473 338 LDNHRWYPLELRKEKS 353 (643)
Q Consensus 338 ~~t~~W~~l~~~~~~~ 353 (643)
+++.+++.++...+.+
T Consensus 304 peta~ftv~p~pr~n~ 319 (353)
T COG4257 304 PETARFTVLPIPRPNS 319 (353)
T ss_pred cccceEEEecCCCCCC
Confidence 9999999999865543
No 122
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.17 E-value=78 Score=34.83 Aligned_cols=182 Identities=11% Similarity=0.008 Sum_probs=89.7
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P 177 (643)
..+|++|+.+++=..++.. + .... ...+ +..|++...... ..++|.+|..+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~--~--g~~~-~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF--K--GSNS-APAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQS--S 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC--C--CCcc-ceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCC--C
Confidence 4699999988876666431 1 1111 2222 345554433211 25799999988877666431 1
Q ss_pred CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 178 ~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
.........-+++.++|..... + ...+|.++..+.....+.... .......+...+..|++.....+.
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~-g-----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRG-G-----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCC-C-----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCCc
Confidence 1111111112444334432111 1 246888888877777765331 111112222224455544332211
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEE
Q 006473 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (643)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd 337 (643)
..++++|+.+.....+...+. ...-...-+++.++|..... -...+++++
T Consensus 352 --------------~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~-----------g~~~l~~~~ 401 (427)
T PRK02889 352 --------------FKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG-----------GRSVLAAVS 401 (427)
T ss_pred --------------EEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC-----------CCEEEEEEE
Confidence 268999988887776643211 01111222566666665422 023477777
Q ss_pred CCC
Q 006473 338 LDN 340 (643)
Q Consensus 338 ~~t 340 (643)
+..
T Consensus 402 ~~g 404 (427)
T PRK02889 402 SDG 404 (427)
T ss_pred CCC
Confidence 743
No 123
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.70 E-value=80 Score=34.59 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=36.7
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++++|++|-. .-++.=.-.-.+|+.+..+. ..|-..+..+++ ++.+++.|.. ..++
T Consensus 146 ~~~g~~vG~~----------G~il~T~DgG~tW~~~~~~~-~~p~~~~~i~~~~~~~~~ivg~~------------G~v~ 202 (398)
T PLN00033 146 GKEGWIIGKP----------AILLHTSDGGETWERIPLSP-KLPGEPVLIKATGPKSAEMVTDE------------GAIY 202 (398)
T ss_pred CCEEEEEcCc----------eEEEEEcCCCCCceECcccc-CCCCCceEEEEECCCceEEEecc------------ceEE
Confidence 5667777541 23343333346899886432 112223334444 4567888742 2355
Q ss_pred EEECCCCcEEEe
Q 006473 160 MLDLKTNQWEQL 171 (643)
Q Consensus 160 ~yD~~t~~W~~~ 171 (643)
+-+-.-.+|+.+
T Consensus 203 ~S~D~G~tW~~~ 214 (398)
T PLN00033 203 VTSNAGRNWKAA 214 (398)
T ss_pred EECCCCCCceEc
Confidence 555556689986
No 124
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.00 E-value=27 Score=31.36 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=56.3
Q ss_pred EECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC-CCCCCCceeEEEEECCEEEEEeeeecCCCceeeecc
Q 006473 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (643)
Q Consensus 132 ~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~d 210 (643)
.++|.||-..-. .. ...+-+..||+.+.+|+.+..+ ...........+.++++|-++.-..... ...-+
T Consensus 3 cinGvly~~a~~-~~------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~ 72 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSID 72 (129)
T ss_pred EECcEEEeEEEE-CC------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEE
Confidence 357777776654 11 1246799999999999988763 1134445567777899988875543211 12457
Q ss_pred EEEE-EcCCCceEEecc
Q 006473 211 LYVF-DLDQFKWQEIKP 226 (643)
Q Consensus 211 v~~y-D~~t~~W~~v~~ 226 (643)
+|++ |.....|.+...
T Consensus 73 iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEeeccccceEEEEEE
Confidence 8888 566788988755
No 125
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.69 E-value=40 Score=34.69 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred EEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC-Cce
Q 006473 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSG 182 (643)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~-Rs~ 182 (643)
++||.++.-+..+.+ ..-.-+.+|+. ++.+|+..= .-|-+-+.|+.+..=+.++. |.+ ..+
T Consensus 172 rLdPa~~~i~vfpaP---qG~gpyGi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~---P~~~~~g 234 (353)
T COG4257 172 RLDPARNVISVFPAP---QGGGPYGICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ---PNALKAG 234 (353)
T ss_pred ecCcccCceeeeccC---CCCCCcceEECCCCcEEEEec-----------cccceEEcccccCCcceecC---CCccccc
Confidence 567776665555443 22233445555 677777521 12456678887776555543 333 222
Q ss_pred eEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCC
Q 006473 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (643)
Q Consensus 183 h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~ 260 (643)
.+-+.. -+++++-- .-...+++||+++..|..-+.+. ..+|-....+--.+++++.---
T Consensus 235 sRriwsdpig~~witt---------wg~g~l~rfdPs~~sW~eypLPg----s~arpys~rVD~~grVW~sea~------ 295 (353)
T COG4257 235 SRRIWSDPIGRAWITT---------WGTGSLHRFDPSVTSWIEYPLPG----SKARPYSMRVDRHGRVWLSEAD------ 295 (353)
T ss_pred ccccccCccCcEEEec---------cCCceeeEeCcccccceeeeCCC----CCCCcceeeeccCCcEEeeccc------
Confidence 222222 34566541 01457999999999999887662 2233332223336666663221
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
.+.+.+||+.+.+.+.+.
T Consensus 296 ----------agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 ----------AGAIGRFDPETARFTVLP 313 (353)
T ss_pred ----------cCceeecCcccceEEEec
Confidence 234789999999998874
No 126
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.47 E-value=75 Score=33.42 Aligned_cols=193 Identities=13% Similarity=0.139 Sum_probs=85.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~ 159 (643)
++..||.|-. .-+++-.-.-.+|..+.... +.|...+.++++ .+.++++|.. ..+|
T Consensus 71 ~~~g~ivG~~----------g~ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~~~l~~~~------------G~iy 127 (302)
T PF14870_consen 71 GNEGWIVGEP----------GLLLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGSAELAGDR------------GAIY 127 (302)
T ss_dssp TTEEEEEEET----------TEEEEESSTTSS-EE----T-T-SS-EEEEEEEETTEEEEEETT--------------EE
T ss_pred CCceEEEcCC----------ceEEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCcEEEEcCC------------CcEE
Confidence 6788887651 12444333456899986332 345555655555 6678887643 2344
Q ss_pred EEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccc
Q 006473 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (643)
Q Consensus 160 ~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (643)
+=.-.-.+|+.+... ...+-...... ++.+++++.. + +-+...|+-...|...... ..|.-
T Consensus 128 ~T~DgG~tW~~~~~~---~~gs~~~~~r~~dG~~vavs~~-G--------~~~~s~~~G~~~w~~~~r~------~~~ri 189 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSE---TSGSINDITRSSDGRYVAVSSR-G--------NFYSSWDPGQTTWQPHNRN------SSRRI 189 (302)
T ss_dssp EESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETT-S--------SEEEEE-TT-SS-EEEE--------SSS-E
T ss_pred EeCCCCCCeeEcccC---CcceeEeEEECCCCcEEEEECc-c--------cEEEEecCCCccceEEccC------cccee
Confidence 444455689987642 12222222223 5566555532 1 1233557777789877654 34444
Q ss_pred eeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEe--CCCCeeEEeccCCCCCCCcee-eEEEEE-CCeEEEec
Q 006473 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD--PRTWEWSKVKKIGMPPGPRAG-FSMCVH-KKRALLFG 313 (643)
Q Consensus 239 ~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd--~~t~~W~~l~~~g~~P~~R~g-~s~~~~-~~~iyvfG 313 (643)
.+|... ++.|+++. ..+. +++-+ -...+|.+.... .+....+ ..+++. .+.+++.|
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~----------------~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQ----------------IQFSDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTE----------------EEEEE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEE
T ss_pred hhceecCCCCEEEEe-CCcE----------------EEEccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEe
Confidence 445444 67787765 3332 23333 344578773321 1122233 345555 57899988
Q ss_pred cccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
|... |++=.=.-.+|.+...
T Consensus 251 g~G~---------------l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 251 GSGT---------------LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp STT----------------EEEESSTTSS-EE-GG
T ss_pred CCcc---------------EEEeCCCCccceECcc
Confidence 8532 3333333468987765
No 127
>PTZ00421 coronin; Provisional
Probab=81.32 E-value=1e+02 Score=34.84 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=27.8
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~ 167 (643)
+.+.+||+.+.+-...-... ..+ -.+++.. ++.+++.|+.. ..+.+||+.++.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h-~~~--V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~ 201 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCH-SDQ--ITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEECCCCeEEEEEcCC-CCc--eEEEEEECCCCEEEEecCC-----------CEEEEEECCCCc
Confidence 35778888876433211111 111 1122222 56677777653 357789988765
No 128
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.04 E-value=94 Score=34.32 Aligned_cols=173 Identities=16% Similarity=0.253 Sum_probs=88.6
Q ss_pred cCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
..|++.++.+.++-.++...| |.....+-| ++.|+|.--+..... -...+|..+...-+...+..
T Consensus 106 taDly~v~~e~Ge~kRiTyfG----r~fT~VaG~~~dg~iiV~TD~~tPF~---q~~~lYkv~~dg~~~e~Lnl------ 172 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFG----RRFTRVAGWIPDGEIIVSTDFHTPFS---QWTELYKVNVDGIKTEPLNL------ 172 (668)
T ss_pred cccEEEEeCCCCcEEEEEEec----cccceeeccCCCCCEEEEeccCCCcc---cceeeeEEccCCceeeeccC------
Confidence 478999999999999888743 444444444 677887765543211 12233333333222222211
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC-CCCCCCceeeEEEEECCeEEE
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GMPPGPRAGFSMCVHKKRALL 311 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g~~P~~R~g~s~~~~~~~iyv 311 (643)
.-.+..+..+.++++|-..... +-=..-+|.....+|+=.....+.+++-.+ +... +-.++++++|.
T Consensus 173 ----Gpathiv~~dg~ivigRntydL--P~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS------~PmIV~~RvYF 240 (668)
T COG4946 173 ----GPATHIVIKDGIIVIGRNTYDL--PHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS------SPMIVGERVYF 240 (668)
T ss_pred ----CceeeEEEeCCEEEEccCcccC--cccccccCCccceEEEEecCCcceeeeeecCCCcC------CceEEcceEEE
Confidence 1122334455577777433220 000112233445577766666667766543 1111 11344555555
Q ss_pred ecccccc---------------------------ccCccccccccCCcEEEEECCCCcEEEeEecCCC
Q 006473 312 FGGVVDM---------------------------EMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEK 352 (643)
Q Consensus 312 fGG~~~~---------------------------~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~ 352 (643)
+--..+. ...+..+.-..-.++|.|||++.+-.+|...-+.
T Consensus 241 lsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl 308 (668)
T COG4946 241 LSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPL 308 (668)
T ss_pred EecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCcc
Confidence 4311110 1112233333356899999999999999886443
No 129
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=80.21 E-value=31 Score=38.07 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=36.0
Q ss_pred cEEEEEcCC----CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 006473 210 DLYVFDLDQ----FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (643)
Q Consensus 210 dv~~yD~~t----~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (643)
.|..||... ..|..... .|-.|-+++..+..|++-=|+++. ++.||+....-
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs-------AP~~gicfspsne~l~vsVG~Dkk----------------i~~yD~~s~~s 243 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS-------APCRGICFSPSNEALLVSVGYDKK----------------INIYDIRSQAS 243 (673)
T ss_pred eEEEEeccCCCcccchhhhcc-------CCcCcceecCCccceEEEecccce----------------EEEeecccccc
Confidence 456666653 23544443 345677788889999999999887 89999875443
No 130
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.81 E-value=40 Score=37.89 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=44.6
Q ss_pred CCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeec
Q 006473 123 PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYD 200 (643)
Q Consensus 123 ~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~ 200 (643)
.|+.+.-++.. .-.||+.|- -++||+||+..+.|-..-. ...+--++..+.--+.|+++||-.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~--~~~~~lN~v~in~~hgLla~Gt~~- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFE--TDSGELNVVSINEEHGLLACGTED- 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec------------CcceEEEEccccccccccc--cccccceeeeecCccceEEecccC-
Confidence 45566666554 456777663 2689999999999854321 122222322222346788899853
Q ss_pred CCCceeeeccEEEEEcCCC
Q 006473 201 TLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~ 219 (643)
..|..||+.+.
T Consensus 197 --------g~VEfwDpR~k 207 (703)
T KOG2321|consen 197 --------GVVEFWDPRDK 207 (703)
T ss_pred --------ceEEEecchhh
Confidence 45777787653
No 131
>smart00284 OLF Olfactomedin-like domains.
Probab=78.75 E-value=82 Score=32.23 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=75.6
Q ss_pred CCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC----CCCCCCccce---eEEEeCCEE
Q 006473 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG----SMWPSPRSGF---QFFVYQDEV 248 (643)
Q Consensus 176 ~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~----~~~P~~R~~~---s~~~~~~~i 248 (643)
+|.+-.|.+.+++++.||..-.. .+.+.+||+.+.+-.....+|. ...|-...++ -+++-++.|
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~~---------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GL 140 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKFN---------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGL 140 (255)
T ss_pred CCCccccccEEEECceEEEEecC---------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCce
Confidence 57778888899999999985432 4689999999987654444432 1223222222 234446666
Q ss_pred EEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccc
Q 006473 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSL 328 (643)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~ 328 (643)
+|+=..... .+.+ -+-.+|+.+..-+..-..+ .| .+.-..|.++-|.||++-.....
T Consensus 141 WvIYat~~~---------~g~i--vvSkLnp~tL~ve~tW~T~-~~-k~sa~naFmvCGvLY~~~s~~~~---------- 197 (255)
T smart00284 141 WVIYATEQN---------AGKI--VISKLNPATLTIENTWITT-YN-KRSASNAFMICGILYVTRSLGSK---------- 197 (255)
T ss_pred EEEEeccCC---------CCCE--EEEeeCcccceEEEEEEcC-CC-cccccccEEEeeEEEEEccCCCC----------
Confidence 666222111 0111 1335666654333322211 12 23333566778999998532210
Q ss_pred cCCcEEEEECCCCcEEE
Q 006473 329 FLNELYGFQLDNHRWYP 345 (643)
Q Consensus 329 ~~ndl~~yd~~t~~W~~ 345 (643)
-..-.|+||+.+++=..
T Consensus 198 ~~~I~yayDt~t~~~~~ 214 (255)
T smart00284 198 GEKVFYAYDTNTGKEGH 214 (255)
T ss_pred CcEEEEEEECCCCccce
Confidence 12237899998865333
No 132
>PRK01742 tolB translocation protein TolB; Provisional
Probab=78.74 E-value=1.1e+02 Score=33.68 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=77.1
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-CC-EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KN-YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-~~-~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+|.+|+.+++-+.+.... . ...+.+.. ++ .|++...... .-++|.+|+.+.....+... ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~--g--~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 292 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR--G--HNGAPAFSPDGSRLAFASSKDG---------VLNIYVMGANGGTPSQLTSG--AG 292 (429)
T ss_pred cEEEEEeCCCCceEEEecCC--C--ccCceeECCCCCEEEEEEecCC---------cEEEEEEECCCCCeEeeccC--CC
Confidence 36899999888766665421 1 11122222 44 4444332211 13699999988887776431 11
Q ss_pred CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCC
Q 006473 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (643)
Q Consensus 179 ~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~ 256 (643)
......+ +++.++|..... + ...+|.++.....-..+. . .. +.......+..|++.++
T Consensus 293 ---~~~~~~wSpDG~~i~f~s~~~-g-----~~~I~~~~~~~~~~~~l~-~------~~-~~~~~SpDG~~ia~~~~--- 352 (429)
T PRK01742 293 ---NNTEPSWSPDGQSILFTSDRS-G-----SPQVYRMSASGGGASLVG-G------RG-YSAQISADGKTLVMING--- 352 (429)
T ss_pred ---CcCCEEECCCCCEEEEEECCC-C-----CceEEEEECCCCCeEEec-C------CC-CCccCCCCCCEEEEEcC---
Confidence 1122223 444334433111 1 246777777655333331 1 11 11122222445555433
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE-ECCeEEEeccc
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGV 315 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~-~~~~iyvfGG~ 315 (643)
+.++.+|+.+..+..+.... . ..+..+ -+++++++++.
T Consensus 353 ---------------~~i~~~Dl~~g~~~~lt~~~-----~-~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 353 ---------------DNVVKQDLTSGSTEVLSSTF-----L-DESPSISPNGIMIIYSST 391 (429)
T ss_pred ---------------CCEEEEECCCCCeEEecCCC-----C-CCCceECCCCCEEEEEEc
Confidence 12677898888887764321 1 112222 26777777764
No 133
>PRK10115 protease 2; Provisional
Probab=78.43 E-value=1.5e+02 Score=35.04 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=75.4
Q ss_pred CeEEEEECCCCcE--EEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEc--CCCceEEeccCCCC
Q 006473 156 KDFWMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGS 230 (643)
Q Consensus 156 ~dv~~yD~~t~~W--~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~ 230 (643)
.++|++++.|..- ..+-. .+........... +++.+++..... ..+.++.|+. .+..|..+.+.+
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~-- 268 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASA------TTSEVLLLDAELADAEPFVFLPRR-- 268 (686)
T ss_pred CEEEEEECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECC------ccccEEEEECcCCCCCceEEEECC--
Confidence 7899999998833 22222 1222222222222 333333444322 2457888873 334444333321
Q ss_pred CCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCC-CCeeEEeccCCCCCCCceeeEEEEECCeE
Q 006473 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (643)
Q Consensus 231 ~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~~P~~R~g~s~~~~~~~i 309 (643)
.... +.....++.+||.--.... ...+..+++. ...|+.+-... ..+.--.+.+.++.|
T Consensus 269 --~~~~--~~~~~~~~~ly~~tn~~~~-------------~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~l 328 (686)
T PRK10115 269 --KDHE--YSLDHYQHRFYLRSNRHGK-------------NFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLFTDWL 328 (686)
T ss_pred --CCCE--EEEEeCCCEEEEEEcCCCC-------------CceEEEecCCCcccCeEEECCC---CCCEEEEEEEECCEE
Confidence 1222 2333446788887543221 2235666665 57898886421 122333455557777
Q ss_pred EEeccccccccCccccccccCCcEEEEECCCCcEEEeE
Q 006473 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (643)
Q Consensus 310 yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (643)
++..-... ...|+++++.++....+.
T Consensus 329 ~~~~~~~g------------~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 329 VVEERQRG------------LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEEeCC------------EEEEEEEcCCCCceEEec
Confidence 77654332 344888877655444433
No 134
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.41 E-value=51 Score=37.15 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCC
Q 006473 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (643)
Q Consensus 177 P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~ 254 (643)
-.|+.|.-|++. +--||+.|- -.+||+|++..+.|-..-.. -.+-..+.-+.--+.|+.+||.
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs----------g~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS----------GSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ecCcCCccccccCCCccEEEeec----------CcceEEEEcccccccccccc-----ccccceeeeecCccceEEeccc
Confidence 345666656554 334666543 46899999999988654332 1111122222226678999998
Q ss_pred CCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
.+. |.++|+.+.
T Consensus 196 ~g~----------------VEfwDpR~k 207 (703)
T KOG2321|consen 196 DGV----------------VEFWDPRDK 207 (703)
T ss_pred Cce----------------EEEecchhh
Confidence 766 778887654
No 135
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=78.19 E-value=98 Score=34.52 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=40.9
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
+|-.+-...+-..+.+.+.-..|...+.|.| ++.+ |.+|+.+. .+.+++. ..|..-+.+.-.....+
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DG--------SIQ~W~~--~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDG--------SIQIWDK--GSRTVRPVMKVKDAHLP 363 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCC--------ceeeeec--CCcccccceEeeeccCC
Confidence 3433333334444445444556777777777 3455 56666442 4555554 33333222211111122
Q ss_pred ccceeEEEe--CCEEEEEcCCCCC
Q 006473 236 RSGFQFFVY--QDEVFLYGGYSKE 257 (643)
Q Consensus 236 R~~~s~~~~--~~~iyv~GG~~~~ 257 (643)
-.+-+++.+ ++.+++--|.+..
T Consensus 364 g~~Itsi~FS~dg~~LlSRg~D~t 387 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYLLSRGFDDT 387 (641)
T ss_pred CCceeEEEeccccchhhhccCCCc
Confidence 222233333 6666666666544
No 136
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.65 E-value=1e+02 Score=32.20 Aligned_cols=162 Identities=20% Similarity=0.280 Sum_probs=84.1
Q ss_pred CCCcee---eEEEEECCEEEEEeCccCCCCC-----------CcceecCeEEEEECCCCc----EEEeccCCCCCCCcee
Q 006473 122 PPPRSA---HQAVSWKNYLYIFGGEFTSPNQ-----------ERFHHYKDFWMLDLKTNQ----WEQLNLKGCPSPRSGH 183 (643)
Q Consensus 122 P~pRs~---ha~~~~~~~iyvfGG~~~~~~~-----------~~~~~~~dv~~yD~~t~~----W~~~~~~g~P~~Rs~h 183 (643)
|.||++ |.++..-+.++.|||+--.+.. .-..-|+.|..||+.+++ |..--. .+..=.|-
T Consensus 30 ~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih--~~~~WaGE 107 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIH--DKTKWAGE 107 (339)
T ss_pred CCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccC--Cccccccc
Confidence 466764 5555544444457775322211 111347789999998886 543322 12111121
Q ss_pred EE-EE---ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCC
Q 006473 184 RM-VL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (643)
Q Consensus 184 ~~-~~---~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~ 259 (643)
.. .+ +++.|++--+- +. ..--||..|..+..=..+... |.+. .+.+++..+|-+ ...
T Consensus 108 VSdIlYdP~~D~LLlAR~D-Gh-----~nLGvy~ldr~~g~~~~L~~~-----ps~K---G~~~~D~a~F~i--~~~--- 168 (339)
T PF09910_consen 108 VSDILYDPYEDRLLLARAD-GH-----ANLGVYSLDRRTGKAEKLSSN-----PSLK---GTLVHDYACFGI--NNF--- 168 (339)
T ss_pred hhheeeCCCcCEEEEEecC-Cc-----ceeeeEEEcccCCceeeccCC-----CCcC---ceEeeeeEEEec--ccc---
Confidence 11 11 25677765431 11 234688899888887777666 4432 233334333322 111
Q ss_pred CccCCCCCCceeeeEEEEeCCCCee--EEeccC----CCCCCCceeeEEEEECCeEEEe
Q 006473 260 TDKNQSEKGIIHSDLWSLDPRTWEW--SKVKKI----GMPPGPRAGFSMCVHKKRALLF 312 (643)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W--~~l~~~----g~~P~~R~g~s~~~~~~~iyvf 312 (643)
..-.+.+.|||+.+.+| +..... |.+...|..-.|+...+++|.|
T Consensus 169 --------~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 169 --------HKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred --------ccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 12346689999999999 443321 1122223344556666666655
No 137
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=76.21 E-value=95 Score=31.68 Aligned_cols=230 Identities=12% Similarity=0.141 Sum_probs=94.3
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEE-EECCCCcEEEecCCCCCC-------CceeeEEEEECCEEEEEeC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYR-YDVEKQEWKVISSPNSPP-------PRSAHQAVSWKNYLYIFGG 142 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~-yd~~~~~W~~l~s~~~P~-------pRs~ha~~~~~~~iyvfGG 142 (643)
+.++-++ +|+||.+=-...-....-....+|. --...+.|+.-.-+..|. .-.-|+.|.+++.-|.+|=
T Consensus 77 CmSMGv~---~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~Gy 153 (367)
T PF12217_consen 77 CMSMGVV---GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGY 153 (367)
T ss_dssp -B-EEEE---TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEE
T ss_pred eeeeeee---cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEe
Confidence 4555666 7899876544222222111222331 225677898543332232 3457888999888888874
Q ss_pred ccCCCCCCcceecCeEEEEECC--C-CcE--EEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC
Q 006473 143 EFTSPNQERFHHYKDFWMLDLK--T-NQW--EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (643)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~--t-~~W--~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~ 217 (643)
.++.... .-+ .+..|... + ... +.++.. ....-+-.+.-.+++.||+.--.+.. +..-..+.+-+..
T Consensus 154 HnGD~sP---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~---~~~GS~L~rs~d~ 225 (367)
T PF12217_consen 154 HNGDVSP---REL-GFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLP---TNPGSSLHRSDDN 225 (367)
T ss_dssp EE-SSSS----EE-EEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-T---TS---EEEEESST
T ss_pred ccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCC---CCCcceeeeeccc
Confidence 3332221 001 12222111 0 011 122211 12233445556679999998643322 2234567777777
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC---CCccCCCCCCceeeeEEEE-------eCCCCeeEEe
Q 006473 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV---STDKNQSEKGIIHSDLWSL-------DPRTWEWSKV 287 (643)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~~~~dv~~y-------d~~t~~W~~l 287 (643)
-..|..+..+. ....+..-++..++.|||||--.... .....++-.+. ...++.. .+...+|..+
T Consensus 226 G~~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~-yPRtF~~k~nv~~W~~d~~ew~ni 300 (367)
T PF12217_consen 226 GQNWSSLRFPN----NVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRAN-YPRTFMLKVNVSDWSLDDVEWVNI 300 (367)
T ss_dssp TSS-EEEE-TT-------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B---EEEEEEEETTT---TT---EEE
T ss_pred CCchhhccccc----cccccCCCceeeCCEEEEEeccccccccccCCCccccccc-CCceEEEEeecccCCccceEEEEe
Confidence 77899887651 23334444566799999998532110 00000111111 1112222 3556677776
Q ss_pred ccC---CCCCCCceee-EEEEECCeE-EEecccc
Q 006473 288 KKI---GMPPGPRAGF-SMCVHKKRA-LLFGGVV 316 (643)
Q Consensus 288 ~~~---g~~P~~R~g~-s~~~~~~~i-yvfGG~~ 316 (643)
... |..-..-.|. ++|+.++.| |||||..
T Consensus 301 tdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 301 TDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp EE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 542 3333334444 445557776 5788864
No 138
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.82 E-value=1.2e+02 Score=32.21 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=82.1
Q ss_pred eeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEeccCCCCCCCceeEEEEE---CCEEEEEeee
Q 006473 126 SAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGF 198 (643)
Q Consensus 126 s~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~ 198 (643)
.-|++... ++.+|+..= -.+.+++|+..... .........| +-++.+-.++ +.++||..-.
T Consensus 145 h~H~v~~~pdg~~v~v~dl-----------G~D~v~~~~~~~~~~~l~~~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDL-----------GADRVYVYDIDDDTGKLTPVDSIKVP-PGSGPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp CEEEEEE-TTSSEEEEEET-----------TTTEEEEEEE-TTS-TEEEEEEEECS-TTSSEEEEEE-TTSSEEEEEETT
T ss_pred cceeEEECCCCCEEEEEec-----------CCCEEEEEEEeCCCceEEEeeccccc-cCCCCcEEEEcCCcCEEEEecCC
Confidence 34666555 457777631 03568888876655 6553321122 2233333333 4589998653
Q ss_pred ecCCCceeeeccEEEEEcC--CCceEEeccCCCCC-CCCCc-cceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceee
Q 006473 199 YDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSM-WPSPR-SGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (643)
Q Consensus 199 ~~~~~~~~~~~dv~~yD~~--t~~W~~v~~~~~~~-~P~~R-~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (643)
.+.|.+|+.. +..++.+...+... ..... ..+.+++. +..||+.-.. .+
T Consensus 213 ---------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~----------------~~ 267 (345)
T PF10282_consen 213 ---------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG----------------SN 267 (345)
T ss_dssp ---------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT----------------TT
T ss_pred ---------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc----------------CC
Confidence 4566666655 66665554332110 01122 33344444 5567775433 23
Q ss_pred eEEEEeC--CCCeeEEeccC---CCCCCCceeeEEEE--ECCeEEEeccccccccCccccccccCCcEEEE--ECCCCcE
Q 006473 273 DLWSLDP--RTWEWSKVKKI---GMPPGPRAGFSMCV--HKKRALLFGGVVDMEMKGDVIMSLFLNELYGF--QLDNHRW 343 (643)
Q Consensus 273 dv~~yd~--~t~~W~~l~~~---g~~P~~R~g~s~~~--~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~y--d~~t~~W 343 (643)
.+.+|++ .+.+.+.+... |.. || .+++ -+..||+.+.. .+.|.+| |.++..+
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~--Pr---~~~~s~~g~~l~Va~~~--------------s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKF--PR---HFAFSPDGRYLYVANQD--------------SNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSS--EE---EEEE-TTSSEEEEEETT--------------TTEEEEEEEETTTTEE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCC--cc---EEEEeCCCCEEEEEecC--------------CCeEEEEEEeCCCCcE
Confidence 4556665 44555554332 221 22 3333 34555554432 2445555 5678888
Q ss_pred EEeEe
Q 006473 344 YPLEL 348 (643)
Q Consensus 344 ~~l~~ 348 (643)
..+..
T Consensus 329 ~~~~~ 333 (345)
T PF10282_consen 329 TPVGS 333 (345)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 88774
No 139
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.11 E-value=1.4e+02 Score=31.36 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=79.9
Q ss_pred CCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCC-ce-eeEEEEECCEEEEEeCcc
Q 006473 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP-RS-AHQAVSWKNYLYIFGGEF 144 (643)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~p-Rs-~ha~~~~~~~iyvfGG~~ 144 (643)
....-..+.++. .++-|++|-. ..+++=.---.+|..+.... +.+ .. .+++...++..||.|-.
T Consensus 15 t~~~l~dV~F~d--~~~G~~VG~~----------g~il~T~DGG~tW~~~~~~~-~~~~~~~l~~I~f~~~~g~ivG~~- 80 (302)
T PF14870_consen 15 TDKPLLDVAFVD--PNHGWAVGAY----------GTILKTTDGGKTWQPVSLDL-DNPFDYHLNSISFDGNEGWIVGEP- 80 (302)
T ss_dssp -SS-EEEEEESS--SS-EEEEETT----------TEEEEESSTTSS-EE------S-----EEEEEEEETTEEEEEEET-
T ss_pred CCCceEEEEEec--CCEEEEEecC----------CEEEEECCCCccccccccCC-CccceeeEEEEEecCCceEEEcCC-
Confidence 333444555552 5788888762 23444333345799876432 222 22 33444457889988742
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEE
Q 006473 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (643)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (643)
.-+++-.-.-.+|+++... .+.+.+.+....+ .+.++++|.. ..+|+=.-.-.+|+.
T Consensus 81 -----------g~ll~T~DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~----------G~iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 81 -----------GLLLHTTDGGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR----------GAIYRTTDGGKTWQA 138 (302)
T ss_dssp -----------TEEEEESSTTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT------------EEEESSTTSSEEE
T ss_pred -----------ceEEEecCCCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC----------CcEEEeCCCCCCeeE
Confidence 1233333345689998642 1334444444444 6677776532 234433334567998
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEE
Q 006473 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (643)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~ 302 (643)
+.... . -.-..+... ++.+++++-. +. + +-..++....|..... +..|.--+|
T Consensus 139 ~~~~~-----~-gs~~~~~r~~dG~~vavs~~-G~------------~---~~s~~~G~~~w~~~~r----~~~~riq~~ 192 (302)
T PF14870_consen 139 VVSET-----S-GSINDITRSSDGRYVAVSSR-GN------------F---YSSWDPGQTTWQPHNR----NSSRRIQSM 192 (302)
T ss_dssp EE-S----------EEEEEE-TTS-EEEEETT-SS------------E---EEEE-TT-SS-EEEE------SSS-EEEE
T ss_pred cccCC-----c-ceeEeEEECCCCcEEEEECc-cc------------E---EEEecCCCccceEEcc----Cccceehhc
Confidence 86541 1 122222333 5566666543 32 1 2245777778998875 345666666
Q ss_pred EEE-CCeEEEec
Q 006473 303 CVH-KKRALLFG 313 (643)
Q Consensus 303 ~~~-~~~iyvfG 313 (643)
.+. ++.|++..
T Consensus 193 gf~~~~~lw~~~ 204 (302)
T PF14870_consen 193 GFSPDGNLWMLA 204 (302)
T ss_dssp EE-TTS-EEEEE
T ss_pred eecCCCCEEEEe
Confidence 666 45565543
No 140
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.77 E-value=5.5 Score=42.33 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=4.7
Q ss_pred cHHHHHH
Q 006473 603 SLKDFYR 609 (643)
Q Consensus 603 ~~~~f~~ 609 (643)
+..|||.
T Consensus 363 ~p~d~y~ 369 (514)
T KOG3130|consen 363 TPADIYR 369 (514)
T ss_pred Ccchhhh
Confidence 4458886
No 141
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.65 E-value=2.7 Score=49.00 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=13.8
Q ss_pred cccHHHHHHHhhHhhhceee
Q 006473 37 EDDIDAILLSIQKEEAKKKE 56 (643)
Q Consensus 37 ~edi~~~l~~~~~~~~~~~~ 56 (643)
--+|++|+.+|-+.+....+
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~Ck 1031 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCK 1031 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhc
Confidence 45788888888777665443
No 142
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.51 E-value=1.7e+02 Score=31.31 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=98.5
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
++++|+... + ..++.+|+.+.. |+...... ...........+++||+-... ..+
T Consensus 68 dg~v~~~~~---~-------G~i~A~d~~~g~~~W~~~~~~~--~~~~~~~~~~~~G~i~~g~~~------------g~~ 123 (370)
T COG1520 68 DGTVYVGTR---D-------GNIFALNPDTGLVKWSYPLLGA--VAQLSGPILGSDGKIYVGSWD------------GKL 123 (370)
T ss_pred CCeEEEecC---C-------CcEEEEeCCCCcEEecccCcCc--ceeccCceEEeCCeEEEeccc------------ceE
Confidence 677777511 1 278999999987 87544320 011111112226676654332 258
Q ss_pred EEEECCCC--cEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC--CceEEeccCCCCCCCC
Q 006473 159 WMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEIKPRFGSMWPS 234 (643)
Q Consensus 159 ~~yD~~t~--~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t--~~W~~v~~~~~~~~P~ 234 (643)
++||..+. .|..-... . ++..-.+++.++.+|+.-. .+.++++|..+ ..|..-...+ .+
T Consensus 124 y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s~----------~g~~~al~~~tG~~~W~~~~~~~---~~- 186 (370)
T COG1520 124 YALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGTD----------DGHLYALNADTGTLKWTYETPAP---LS- 186 (370)
T ss_pred EEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEecC----------CCeEEEEEccCCcEEEEEecCCc---cc-
Confidence 89998654 58776542 1 3333334444555554321 35678888775 4577544331 01
Q ss_pred CccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeccCCCCCCCceee--EEEEECCeEE
Q 006473 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGF--SMCVHKKRAL 310 (643)
Q Consensus 235 ~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~g~--s~~~~~~~iy 310 (643)
.+.....+...+.+|+- ..... ..++.+|+.+ ..|..-... +..+..- ...+..+.||
T Consensus 187 ~~~~~~~~~~~~~vy~~-~~~~~--------------~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~ 248 (370)
T COG1520 187 LSIYGSPAIASGTVYVG-SDGYD--------------GILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVY 248 (370)
T ss_pred cccccCceeecceEEEe-cCCCc--------------ceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEE
Confidence 11111122335555543 22101 1588898854 468753221 1111111 1234456666
Q ss_pred EeccccccccCccccccccCCcEEEEECCCC--cEEEeE
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYPLE 347 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~l~ 347 (643)
+-||... ......++++|..+. .|..-.
T Consensus 249 v~~~~~~---------~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 249 VDGGVYA---------GSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ECCcEEE---------EecCCeEEEEEcCCCceEEEEec
Confidence 6666321 112344888887765 576654
No 143
>PRK10115 protease 2; Provisional
Probab=66.88 E-value=2.7e+02 Score=32.92 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=77.5
Q ss_pred CeEEEEEC--CCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcC-CCceEEeccCCCCCC
Q 006473 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMW 232 (643)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~ 232 (643)
+.++.|+. .+..|..+.. .+.. ........++.+|+.--... ....|...++. ...|+.+-+..
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ly~~tn~~~------~~~~l~~~~~~~~~~~~~l~~~~---- 313 (686)
T PRK10115 247 SEVLLLDAELADAEPFVFLP--RRKD-HEYSLDHYQHRFYLRSNRHG------KNFGLYRTRVRDEQQWEELIPPR---- 313 (686)
T ss_pred ccEEEEECcCCCCCceEEEE--CCCC-CEEEEEeCCCEEEEEEcCCC------CCceEEEecCCCcccCeEEECCC----
Confidence 56888883 3445433322 1111 11223345678888753321 12346666766 57898876541
Q ss_pred CCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE---E-CCe
Q 006473 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV---H-KKR 308 (643)
Q Consensus 233 P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~---~-~~~ 308 (643)
..+.--.+.+.++.|++..-..+ ...++++++.+.....+.. +.+.....+.. . .+.
T Consensus 314 -~~~~i~~~~~~~~~l~~~~~~~g--------------~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~ 374 (686)
T PRK10115 314 -ENIMLEGFTLFTDWLVVEERQRG--------------LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSR 374 (686)
T ss_pred -CCCEEEEEEEECCEEEEEEEeCC--------------EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCce
Confidence 12222234445777777654332 2447888876555554431 12222211111 1 123
Q ss_pred E-EEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 309 A-LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 309 i-yvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
+ |.+.+.. ...++|.||+.+.+|..+..
T Consensus 375 ~~~~~ss~~------------~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 375 LRYGYSSMT------------TPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred EEEEEecCC------------CCCEEEEEECCCCcEEEEEe
Confidence 2 2233322 35679999999999988775
No 144
>PRK01029 tolB translocation protein TolB; Provisional
Probab=65.68 E-value=2.2e+02 Score=31.44 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=37.6
Q ss_pred eeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006473 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 272 ~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (643)
.++++||+.+.+...+... + +........ +++.++|..... -...||.+|+.++....+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~---~--~~~~~p~wSpDG~~L~f~~~~~-----------g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS---P--ENKESPSWAIDSLHLVYSAGNS-----------NESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC---C--CCccceEECCCCCEEEEEECCC-----------CCceEEEEECCCCCEEEeec
Confidence 4699999999988877542 1 111122222 455555443221 13579999999998888764
No 145
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=64.55 E-value=1.7e+02 Score=29.75 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCcEEEecCCC---CCCCceeeEEEE-ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEE
Q 006473 110 KQEWKVISSPN---SPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM 185 (643)
Q Consensus 110 ~~~W~~l~s~~---~P~pRs~ha~~~-~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~ 185 (643)
+..|+...++. .|.|-.+.-... -.|.|+..||- .-+++.|+++++.++.-- -..-+-|+.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------------~~~y~~dlE~G~i~r~~r---GHtDYvH~v 162 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------------GVIYQVDLEDGRIQREYR---GHTDYVHSV 162 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------------eEEEEEEecCCEEEEEEc---CCcceeeee
Confidence 34577655442 355555544433 37889988884 357899999998876532 234455666
Q ss_pred EEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCceEE-eccCCCCCCCCCccce--eEEEeCCEEEEEcCCC
Q 006473 186 VLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGF--QFFVYQDEVFLYGGYS 255 (643)
Q Consensus 186 ~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~R~~~--s~~~~~~~iyv~GG~~ 255 (643)
+.-+. -=++-|+-++ .+-++|+.+.+-.+ +.+........|..+- .++..+..-+|+||-.
T Consensus 163 v~R~~~~qilsG~EDG---------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp 227 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG---------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP 227 (325)
T ss_pred eecccCcceeecCCCc---------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC
Confidence 55332 2344455433 45677887766433 3332221112222333 3444466677777753
No 146
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=64.34 E-value=2.5e+02 Score=31.57 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=70.4
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc-----EEEecCCCCCCCceeeEEEE-----ECCEEEEEe
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-----WKVISSPNSPPPRSAHQAVS-----WKNYLYIFG 141 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~-----W~~l~s~~~P~pRs~ha~~~-----~~~~iyvfG 141 (643)
.++.+.| .+-=|+-||. -.+|.+||+.... .++| .|--.|+.-+ .++.|+|+.
T Consensus 171 sal~~Dp--~GaR~~sGs~---------Dy~v~~wDf~gMdas~~~fr~l------~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 171 SALAVDP--SGARFVSGSL---------DYTVKFWDFQGMDASMRSFRQL------QPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred EEeeecC--CCceeeeccc---------cceEEEEecccccccchhhhcc------CcccccccceeeecCCCCeEEEEe
Confidence 3444444 3555666663 3466777776532 2233 2333444333 278888888
Q ss_pred CccCCCCCCcceecCeEEEEECCCCcEEEeccCCC----CCCCceeEEEEE-------CCEEEEEeeeecCCCceeeecc
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC----PSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYND 210 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~----P~~Rs~h~~~~~-------~~~lyvfGG~~~~~~~~~~~~d 210 (643)
|. ...-+||-....|....-... -..--||.+.+- +...|+.-+.+++
T Consensus 234 g~------------aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt--------- 292 (641)
T KOG0772|consen 234 GS------------AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT--------- 292 (641)
T ss_pred cC------------cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc---------
Confidence 85 234567777777766542111 122345655432 3346666665443
Q ss_pred EEEEEcCC--CceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCC
Q 006473 211 LYVFDLDQ--FKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSK 256 (643)
Q Consensus 211 v~~yD~~t--~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~ 256 (643)
+-++|... .+-+.+.+.+. -..|.-.+.|.+ ++.+ |.+|+..
T Consensus 293 lRiWdv~~~k~q~qVik~k~~---~g~Rv~~tsC~~nrdg~~-iAagc~D 338 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPA---GGKRVPVTSCAWNRDGKL-IAAGCLD 338 (641)
T ss_pred EEEEecCCchhheeEEeeccC---CCcccCceeeecCCCcch-hhhcccC
Confidence 33344332 22333444322 234444455555 4444 5566543
No 147
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.94 E-value=1.7e+02 Score=29.59 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=58.4
Q ss_pred cEEEEECCCCcEEEecCCCCCCCceeeEEEEEC--CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCC
Q 006473 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (643)
Q Consensus 102 dv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~--~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~ 179 (643)
.++.+|..+++--+.--+. -....++.+| ..+++-|+.. ..+-.+|..+++.+.+.. +..+
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNeesSVv~SgsfD-----------~s~r~wDCRS~s~ePiQi--ldea 144 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEESSVVASGSFD-----------SSVRLWDCRSRSFEPIQI--LDEA 144 (307)
T ss_pred eEEEEEcccCeeeeecccc----cceeeEEEecCcceEEEecccc-----------ceeEEEEcccCCCCccch--hhhh
Confidence 5788898887532211010 1112233443 3455555543 357789999999888776 5678
Q ss_pred CceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 180 Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
+-+-..+.+.+..+|-|..++ .+-.||+..++
T Consensus 145 ~D~V~Si~v~~heIvaGS~DG---------tvRtydiR~G~ 176 (307)
T KOG0316|consen 145 KDGVSSIDVAEHEIVAGSVDG---------TVRTYDIRKGT 176 (307)
T ss_pred cCceeEEEecccEEEeeccCC---------cEEEEEeecce
Confidence 888888888888888776544 35677776543
No 148
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=63.39 E-value=2.2e+02 Score=30.81 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=79.1
Q ss_pred CCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc--cceeEE
Q 006473 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR--SGFQFF 242 (643)
Q Consensus 165 t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R--~~~s~~ 242 (643)
.+.|+.+.. . .-..--++.++|++|++.- ...++.++.+- .=+++.+........++ .....+
T Consensus 189 ~~~Wt~l~~---~-~~~~~DIi~~kGkfYAvD~----------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLV 253 (373)
T PLN03215 189 GNVLKALKQ---M-GYHFSDIIVHKGQTYALDS----------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFV 253 (373)
T ss_pred CCeeeEccC---C-CceeeEEEEECCEEEEEcC----------CCeEEEEecCC-ceeeecceecccccCCcccCceeEE
Confidence 489999863 2 2224467888999999821 24566666421 11232221111001111 123355
Q ss_pred EeCCEEEEEcCCCCCCCCcc--CC-CCCCceeeeEEEEeCCCCeeEEeccCCCCCC---CceeeEEEE------ECCeEE
Q 006473 243 VYQDEVFLYGGYSKEVSTDK--NQ-SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG---PRAGFSMCV------HKKRAL 310 (643)
Q Consensus 243 ~~~~~iyv~GG~~~~~~~~~--~~-~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~---~R~g~s~~~------~~~~iy 310 (643)
...|.|+++..+........ .. .......-.+|.+|....+|.++...|.--. ...++++.. .++.||
T Consensus 254 Es~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIY 333 (373)
T PLN03215 254 ECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIY 333 (373)
T ss_pred EECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEE
Confidence 66788999988643200000 00 0011233467888988999999987643100 011111111 124455
Q ss_pred EeccccccccCccccccccCCcEEEEECCCCcEEEeEec
Q 006473 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~ 349 (643)
+.. ....++||+..++=..+...
T Consensus 334 Ftd----------------d~~~~v~~~~dg~~~~~~~~ 356 (373)
T PLN03215 334 FTE----------------DTMPKVFKLDNGNGSSIETT 356 (373)
T ss_pred EEC----------------CCcceEEECCCCCccceEee
Confidence 542 23467999998887777664
No 149
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=61.31 E-value=2.4e+02 Score=30.54 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=56.7
Q ss_pred CCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC--CCC-CCC--ceeE
Q 006473 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK--GCP-SPR--SGHR 184 (643)
Q Consensus 110 ~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~--g~P-~~R--s~h~ 184 (643)
.+.|..+.. ..-..-.++.++|++|++.- ...++.++..- .-.++.+. ..+ ..+ ....
T Consensus 189 ~~~Wt~l~~----~~~~~~DIi~~kGkfYAvD~------------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~y 251 (373)
T PLN03215 189 GNVLKALKQ----MGYHFSDIIVHKGQTYALDS------------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRR 251 (373)
T ss_pred CCeeeEccC----CCceeeEEEEECCEEEEEcC------------CCeEEEEecCC-ceeeecceecccccCCcccCcee
Confidence 479998853 22335567778999999832 13466666321 11222110 001 011 1233
Q ss_pred EEEECCEEEEEeeeecCCCc----------eeeeccEEEEEcCCCceEEeccCC
Q 006473 185 MVLYKHKIIVFGGFYDTLRE----------VRYYNDLYVFDLDQFKWQEIKPRF 228 (643)
Q Consensus 185 ~~~~~~~lyvfGG~~~~~~~----------~~~~~dv~~yD~~t~~W~~v~~~~ 228 (643)
.+...+.|+++..+...... ....-.|+.+|....+|.++..+.
T Consensus 252 LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 252 FVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 55667889999886432110 112335677788889999998873
No 150
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=61.06 E-value=2.4e+02 Score=30.27 Aligned_cols=108 Identities=13% Similarity=0.278 Sum_probs=58.9
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCC
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPN 148 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~--~~~~iyvfGG~~~~~~ 148 (643)
-+++...| ++.+.+.||. . +--|.+++.++.|-..-.+. .-...++. +++.+++.||..+
T Consensus 67 vFavsl~P--~~~l~aTGGg----D-----D~AflW~~~~ge~~~eltgH----KDSVt~~~FshdgtlLATGdmsG--- 128 (399)
T KOG0296|consen 67 VFAVSLHP--NNNLVATGGG----D-----DLAFLWDISTGEFAGELTGH----KDSVTCCSFSHDGTLLATGDMSG--- 128 (399)
T ss_pred eEEEEeCC--CCceEEecCC----C-----ceEEEEEccCCcceeEecCC----CCceEEEEEccCceEEEecCCCc---
Confidence 35556666 6889999994 2 34577888888876442221 12222333 3677888888643
Q ss_pred CCcceecCeEEEEECCC--CcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 149 QERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t--~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.+.+|...+ -+|..... .....-..| ...|+++|-.+ ..+|.|.+.+.
T Consensus 129 --------~v~v~~~stg~~~~~~~~e------~~dieWl~WHp~a~illAG~~D---------GsvWmw~ip~~ 180 (399)
T KOG0296|consen 129 --------KVLVFKVSTGGEQWKLDQE------VEDIEWLKWHPRAHILLAGSTD---------GSVWMWQIPSQ 180 (399)
T ss_pred --------cEEEEEcccCceEEEeecc------cCceEEEEecccccEEEeecCC---------CcEEEEECCCc
Confidence 344444443 45654421 111111111 33455655432 46899988776
No 151
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=58.68 E-value=2.2e+02 Score=29.10 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=88.8
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
..+-.||+.++.=..+.+- -.++.+.+++.+ .++-...||+... +-++|+...+-.+.-. .+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~--e~h~kNVtaVgF~~dgrWMyTgseDgt-----------~kIWdlR~~~~qR~~~--~~s 125 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATF--EGHTKNVTAVGFQCDGRWMYTGSEDGT-----------VKIWDLRSLSCQRNYQ--HNS 125 (311)
T ss_pred CeeEEEEccCCCCCceeEE--eccCCceEEEEEeecCeEEEecCCCce-----------EEEEeccCcccchhcc--CCC
Confidence 4677888876531111111 122233444444 6777778887543 4456666544333322 122
Q ss_pred CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCC
Q 006473 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (643)
Q Consensus 179 ~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~ 258 (643)
|.. ..+..-+.-=+|-|-+ ...++++|+.++.......+. .--+--++.+.-+.-+|.++.+..
T Consensus 126 pVn--~vvlhpnQteLis~dq--------sg~irvWDl~~~~c~~~liPe-----~~~~i~sl~v~~dgsml~a~nnkG- 189 (311)
T KOG0315|consen 126 PVN--TVVLHPNQTELISGDQ--------SGNIRVWDLGENSCTHELIPE-----DDTSIQSLTVMPDGSMLAAANNKG- 189 (311)
T ss_pred Ccc--eEEecCCcceEEeecC--------CCcEEEEEccCCccccccCCC-----CCcceeeEEEcCCCcEEEEecCCc-
Confidence 221 2333344444444422 356999999988655443321 112222344554444555554433
Q ss_pred CCccCCCCCCceeeeEEEEeCCCCe-eEEeccCCCCCCCceeeEE-EEE--CCeEEEeccccccccCccccccccCCcEE
Q 006473 259 STDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFSM-CVH--KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (643)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~~~g~~P~~R~g~s~-~~~--~~~iyvfGG~~~~~~~~~~~~~~~~ndl~ 334 (643)
.||++++.+.+ =+.+.+.-. -..+.+|.+ |.+ +++.++.-+.. ..++
T Consensus 190 --------------~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k~lat~ssd--------------ktv~ 240 (311)
T KOG0315|consen 190 --------------NCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVKYLATCSSD--------------KTVK 240 (311)
T ss_pred --------------cEEEEEccCCCccccceEhhh-eecccceEEEEEECCCCcEEEeecCC--------------ceEE
Confidence 26666654421 112221111 124455544 223 45555444432 4588
Q ss_pred EEECCCCcEEEeEe
Q 006473 335 GFQLDNHRWYPLEL 348 (643)
Q Consensus 335 ~yd~~t~~W~~l~~ 348 (643)
+|++++. .++..
T Consensus 241 iwn~~~~--~kle~ 252 (311)
T KOG0315|consen 241 IWNTDDF--FKLEL 252 (311)
T ss_pred EEecCCc--eeeEE
Confidence 8888876 44444
No 152
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=58.66 E-value=2.2e+02 Score=31.37 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=30.3
Q ss_pred eEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEE----E-CCEEEEEeCccC
Q 006473 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS----W-KNYLYIFGGEFT 145 (643)
Q Consensus 72 ~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~----~-~~~iyvfGG~~~ 145 (643)
++++.. +.-.||+||. ...++|++...++.--.+ -+.+++.+. . ++..++.||.++
T Consensus 85 ~al~s~---n~G~~l~ag~--------i~g~lYlWelssG~LL~v-------~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 85 HALASS---NLGYFLLAGT--------ISGNLYLWELSSGILLNV-------LSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeecC---CCceEEEeec--------ccCcEEEEEeccccHHHH-------HHhhccceeEEEEeCCCcEEEecCCCc
Confidence 444444 4556777772 245889988777643222 122232222 2 567777777543
No 153
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=57.58 E-value=2.7e+02 Score=29.81 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=53.0
Q ss_pred cEEEEECCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEeccCCCC
Q 006473 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (643)
Q Consensus 102 dv~~yd~~~~--~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~g~P 177 (643)
.+|+||..+. .|..-... . ++..-..+..++.+|+... -+.++.+|..+. .|+.-...+ .
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~-~ 185 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGTD------------DGHLYALNADTGTLKWTYETPAP-L 185 (370)
T ss_pred eEEEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEecC------------CCeEEEEEccCCcEEEEEecCCc-c
Confidence 7899999654 58866544 2 4444444444666666531 246788888765 587443311 1
Q ss_pred CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCC--CceEEe
Q 006473 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--FKWQEI 224 (643)
Q Consensus 178 ~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t--~~W~~v 224 (643)
..+.....+.-.+.+|+- ... +...++.+|+.+ ..|..-
T Consensus 186 ~~~~~~~~~~~~~~vy~~-~~~-------~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 186 SLSIYGSPAIASGTVYVG-SDG-------YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred ccccccCceeecceEEEe-cCC-------CcceEEEEEccCCcEeeeee
Confidence 222222222334555543 211 112688899865 458754
No 154
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=55.55 E-value=2.9e+02 Score=29.61 Aligned_cols=145 Identities=13% Similarity=0.161 Sum_probs=78.8
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
++.+.+.||... --+++++.++.|--..+ ...--.-..+..+.+.+++-||..+ .|.+
T Consensus 75 ~~~l~aTGGgDD-----------~AflW~~~~ge~~~elt--gHKDSVt~~~FshdgtlLATGdmsG---------~v~v 132 (399)
T KOG0296|consen 75 NNNLVATGGGDD-----------LAFLWDISTGEFAGELT--GHKDSVTCCSFSHDGTLLATGDMSG---------KVLV 132 (399)
T ss_pred CCceEEecCCCc-----------eEEEEEccCCcceeEec--CCCCceEEEEEccCceEEEecCCCc---------cEEE
Confidence 567888888643 35677888887643322 1112222233445778888888643 4555
Q ss_pred EEcCC--CceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccC
Q 006473 214 FDLDQ--FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 214 yD~~t--~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (643)
|...+ .+|..........+ +.-+ ...|++.|-.++. +|+|.+....-.++-.
T Consensus 133 ~~~stg~~~~~~~~e~~dieW--------l~WHp~a~illAG~~DGs----------------vWmw~ip~~~~~kv~~- 187 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEW--------LKWHPRAHILLAGSTDGS----------------VWMWQIPSQALCKVMS- 187 (399)
T ss_pred EEcccCceEEEeecccCceEE--------EEecccccEEEeecCCCc----------------EEEEECCCcceeeEec-
Confidence 55544 34554422210000 0011 4457777777665 9999987764444422
Q ss_pred CCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 291 GMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 291 g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
| +..++.++...-+|+-++.|=.+ ..|-+||+.+.
T Consensus 188 G--h~~~ct~G~f~pdGKr~~tgy~d--------------gti~~Wn~ktg 222 (399)
T KOG0296|consen 188 G--HNSPCTCGEFIPDGKRILTGYDD--------------GTIIVWNPKTG 222 (399)
T ss_pred C--CCCCcccccccCCCceEEEEecC--------------ceEEEEecCCC
Confidence 1 33444444444456666665332 34778888876
No 155
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=55.34 E-value=5.7 Score=47.68 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=10.6
Q ss_pred CCCCCCceEEEEeccCCCEEEEEc
Q 006473 65 APSPRSNCSLNINPLKETELILYG 88 (643)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyvfG 88 (643)
+|..--.|.+... ..+...+++|
T Consensus 1087 e~ggepdh~~~a~-~~Ded~i~~g 1109 (3015)
T KOG0943|consen 1087 EPGGEPDHPAMAP-DGDEDFILAG 1109 (3015)
T ss_pred CCCCCCCCcccCC-CCCccccccc
Confidence 3444445554443 2234456666
No 156
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=54.37 E-value=2.2e+02 Score=34.07 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=22.9
Q ss_pred EEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccC
Q 006473 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPR 227 (643)
Q Consensus 184 ~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~ 227 (643)
+-+++++.||+... .+.|+.+|..+.+ |+.-...
T Consensus 189 TPlvvgg~lYv~t~----------~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 189 TPLKVGDTLYLCTP----------HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred CCEEECCEEEEECC----------CCeEEEEECCCCcEEEEEcCCC
Confidence 34567999998744 3568888887654 7765433
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=52.63 E-value=4e+02 Score=30.84 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=66.5
Q ss_pred EEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCC
Q 006473 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQE 150 (643)
Q Consensus 74 ~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~ 150 (643)
.+..| ++.++.+|-. .--.+|++.+.-+ -+...-...|..+-..+...+ ++.+++.. .
T Consensus 388 ~aiSP--dg~~Ia~st~--------~~~~iy~L~~~~~-vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~------- 448 (691)
T KOG2048|consen 388 AAISP--DGNLIAISTV--------SRTKIYRLQPDPN-VKVINVDDVPLALLDASAISFTIDKNKLFLVS-K------- 448 (691)
T ss_pred eccCC--CCCEEEEeec--------cceEEEEeccCcc-eeEEEeccchhhhccceeeEEEecCceEEEEe-c-------
Confidence 33444 5677777763 1225666665542 222222234555544333333 67777775 1
Q ss_pred cceecCeEEEEECCCCcEEEeccCCCCC----CCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEecc
Q 006473 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPS----PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (643)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~g~P~----~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (643)
...++..++..+.+-..+.... |. +.+.......+++|.+++++ ..+++|++.+.+-+.+.+
T Consensus 449 ---~~~~le~~el~~ps~kel~~~~-~~~~~~~I~~l~~SsdG~yiaa~~t~----------g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 449 ---NIFSLEEFELETPSFKELKSIQ-SQAKCPSISRLVVSSDGNYIAAISTR----------GQIFVYNLETLESHLLKV 514 (691)
T ss_pred ---ccceeEEEEecCcchhhhhccc-cccCCCcceeEEEcCCCCEEEEEecc----------ceEEEEEcccceeecchh
Confidence 1246777777777666554421 22 12222222248899999863 579999999887666654
Q ss_pred C
Q 006473 227 R 227 (643)
Q Consensus 227 ~ 227 (643)
.
T Consensus 515 r 515 (691)
T KOG2048|consen 515 R 515 (691)
T ss_pred c
Confidence 3
No 158
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=52.46 E-value=3e+02 Score=28.93 Aligned_cols=105 Identities=23% Similarity=0.170 Sum_probs=54.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEeccCC--CC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKG--CP 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~g--~P 177 (643)
+.+++|++.++.=+....+ ...+.....-.++.|++.. ..++++++.+. .|+.+.... .+
T Consensus 47 ~~i~r~~~~~g~~~~~~~p---~~~~~~~~~d~~g~Lv~~~--------------~g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSP---GGFSSGALIDAGGRLIACE--------------HGVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred CeEEEecCCcCceEEEECC---CCcccceeecCCCeEEEEc--------------cccEEEeccCCceeEEeccccCCCC
Confidence 5788888887765555442 2222222222244555542 34556666433 335554322 36
Q ss_pred CCCceeEEEEECCEEEEEeeee---cCCCceeeeccEEEEEcCCCceEEe
Q 006473 178 SPRSGHRMVLYKHKIIVFGGFY---DTLREVRYYNDLYVFDLDQFKWQEI 224 (643)
Q Consensus 178 ~~Rs~h~~~~~~~~lyvfGG~~---~~~~~~~~~~dv~~yD~~t~~W~~v 224 (643)
..|.+=..+.-.+.||+ |-.. ......+..-.||+||+. .....+
T Consensus 110 ~~r~ND~~v~pdG~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l 157 (307)
T COG3386 110 LNRPNDGVVDPDGRIWF-GDMGYFDLGKSEERPTGSLYRVDPD-GGVVRL 157 (307)
T ss_pred cCCCCceeEcCCCCEEE-eCCCccccCccccCCcceEEEEcCC-CCEEEe
Confidence 67776666666777775 3332 111112344579999983 444443
No 159
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=51.83 E-value=3.4e+02 Score=29.30 Aligned_cols=185 Identities=13% Similarity=0.098 Sum_probs=89.2
Q ss_pred ccEEEEECCCCc-EEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC
Q 006473 101 GDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~~-W~~l~s~~~P~pRs~ha~~~~---~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~ 176 (643)
+.|.++|..+++ -..++.+. .-|....+ +.++|+.+.. ..+-++|+.+.+=- .. .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~rd------------g~vsviD~~~~~~v--~~--i 74 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG-----APHAGLKFSPDGRYLYVANRD------------GTVSVIDLATGKVV--AT--I 74 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT-SSEEEEEETT------------SEEEEEETTSSSEE--EE--E
T ss_pred CEEEEEECCCCeEEEEEcCCC-----CceeEEEecCCCCEEEEEcCC------------CeEEEEECCcccEE--EE--E
Confidence 578889988875 34554432 22554444 5679998631 35889999988732 22 2
Q ss_pred CCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceE-EeccCCC-CCCCCCccceeEEEeCCEEEEEcC
Q 006473 177 PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRFG-SMWPSPRSGFQFFVYQDEVFLYGG 253 (643)
Q Consensus 177 P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~~-~~~P~~R~~~s~~~~~~~iyv~GG 253 (643)
+.....+++++- +++.++.+.+ ..+.+.++|..+.+=- .++.... ...+.+|...-........||+--
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred ecCCCcceEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 334444444443 4443344443 2468889998876432 2222100 001334443222333444444432
Q ss_pred CCCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeccCCCCCCCceeeEEEEEC-CeEEEeccccccccCccccccccC
Q 006473 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFL 330 (643)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ 330 (643)
.. ...+|..|..... ....- +..++-|-+.+-. ++.|+. +.+. .
T Consensus 147 kd---------------~~~I~vVdy~d~~~~~~~~i-----~~g~~~~D~~~dpdgry~~v-a~~~------------s 193 (369)
T PF02239_consen 147 KD---------------TGEIWVVDYSDPKNLKVTTI-----KVGRFPHDGGFDPDGRYFLV-AANG------------S 193 (369)
T ss_dssp TT---------------TTEEEEEETTTSSCEEEEEE-----E--TTEEEEEE-TTSSEEEE-EEGG------------G
T ss_pred cc---------------CCeEEEEEeccccccceeee-----cccccccccccCcccceeee-cccc------------c
Confidence 21 2357888855432 22221 2345566665554 344444 3332 4
Q ss_pred CcEEEEECCCCcEEEeE
Q 006473 331 NELYGFQLDNHRWYPLE 347 (643)
Q Consensus 331 ndl~~yd~~t~~W~~l~ 347 (643)
|.+-+.|+.+++-..+-
T Consensus 194 n~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALI 210 (369)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred ceeEEEeeccceEEEEe
Confidence 67888898887655543
No 160
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.32 E-value=8.9 Score=44.95 Aligned_cols=8 Identities=25% Similarity=0.061 Sum_probs=3.9
Q ss_pred EEEecccc
Q 006473 309 ALLFGGVV 316 (643)
Q Consensus 309 iyvfGG~~ 316 (643)
+|++||++
T Consensus 1268 ~~~~G~FH 1275 (1516)
T KOG1832|consen 1268 DYGGGGFH 1275 (1516)
T ss_pred eccccccc
Confidence 44555544
No 161
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=49.76 E-value=4e+02 Score=29.55 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=36.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
.+.+++.|+.. ..|.++|+.+.+-...-. .....-...+.--++.+++.+.+ -..+.+
T Consensus 257 ~g~~i~Sgs~D-----------~tvriWd~~~~~~~~~l~--~hs~~is~~~f~~d~~~l~s~s~---------d~~i~v 314 (456)
T KOG0266|consen 257 DGNLLVSGSDD-----------GTVRIWDVRTGECVRKLK--GHSDGISGLAFSPDGNLLVSASY---------DGTIRV 314 (456)
T ss_pred CCCEEEEecCC-----------CcEEEEeccCCeEEEeee--ccCCceEEEEECCCCCEEEEcCC---------CccEEE
Confidence 45788888753 457788888855443322 12222111122225566666654 346788
Q ss_pred EEcCCCc
Q 006473 214 FDLDQFK 220 (643)
Q Consensus 214 yD~~t~~ 220 (643)
||+.+..
T Consensus 315 wd~~~~~ 321 (456)
T KOG0266|consen 315 WDLETGS 321 (456)
T ss_pred EECCCCc
Confidence 8987765
No 162
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.18 E-value=12 Score=35.34 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.7
Q ss_pred CCcccccc
Q 006473 450 KPCGRINS 457 (643)
Q Consensus 450 ~P~~R~~~ 457 (643)
.|..|..+
T Consensus 164 ~~s~~~~~ 171 (227)
T KOG3241|consen 164 FPSTSLEE 171 (227)
T ss_pred ccchhHHH
Confidence 45555433
No 163
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=48.79 E-value=3.6e+02 Score=28.74 Aligned_cols=160 Identities=15% Similarity=0.192 Sum_probs=84.2
Q ss_pred ccEEEEECCCCcEEEecCCCC-C--CCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNS-P--PPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~-P--~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~ 176 (643)
..++.|+...+.-.....-.. | .|| |-+.-- +..+|++.=.++ .-++|.||....+.+.+.....
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPR--Hi~FHpn~k~aY~v~EL~s---------tV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPR--HIVFHPNGKYAYLVNELNS---------TVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcc--eEEEcCCCcEEEEEeccCC---------EEEEEEEcCCCceEEEeeeecc
Confidence 467788887666554332221 1 223 332222 456888865432 2468889988888887765332
Q ss_pred -CCC---CceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEc--CCCceEEeccCCCCCCCCCccceeEEEeCCE
Q 006473 177 -PSP---RSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (643)
Q Consensus 177 -P~~---Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~ 247 (643)
|.. -.+.+++.+ +.+||+. .+..+.+++|-. .+.+-..+...+.. ...||. |.+...++.
T Consensus 236 lP~dF~g~~~~aaIhis~dGrFLYas---------NRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~-F~i~~~g~~ 304 (346)
T COG2706 236 LPEDFTGTNWAAAIHISPDGRFLYAS---------NRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRD-FNINPSGRF 304 (346)
T ss_pred CccccCCCCceeEEEECCCCCEEEEe---------cCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCcc-ceeCCCCCE
Confidence 322 122233333 5678875 234677888744 44543333332211 123553 344444555
Q ss_pred EEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCC
Q 006473 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296 (643)
Q Consensus 248 iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 296 (643)
|++.+= ... +-.++.-|+.+.+-+.+...-..|.|
T Consensus 305 Liaa~q-~sd-------------~i~vf~~d~~TG~L~~~~~~~~~p~P 339 (346)
T COG2706 305 LIAANQ-KSD-------------NITVFERDKETGRLTLLGRYAVVPEP 339 (346)
T ss_pred EEEEcc-CCC-------------cEEEEEEcCCCceEEecccccCCCCc
Confidence 555543 222 13366778888888887664333433
No 164
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=48.60 E-value=3.8e+02 Score=28.93 Aligned_cols=194 Identities=17% Similarity=0.135 Sum_probs=87.0
Q ss_pred eccEEEEECCCCcEE-EecCCCC----CCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccC
Q 006473 100 YGDLYRYDVEKQEWK-VISSPNS----PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK 174 (643)
Q Consensus 100 ~ndv~~yd~~~~~W~-~l~s~~~----P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~ 174 (643)
-+.+.++|..+.+=. .++.... +.+|...-..+..+..||+--.. ...+|..|.....=.....
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----------~~~I~vVdy~d~~~~~~~~- 167 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----------TGEIWVVDYSDPKNLKVTT- 167 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----------TTEEEEEETTTSSCEEEEE-
T ss_pred CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----------CCeEEEEEeccccccceee-
Confidence 357888898876533 3332211 33454333333355666664321 3578999976642111111
Q ss_pred CCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcC
Q 006473 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGG 253 (643)
Q Consensus 175 g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG 253 (643)
....+.-|-...-.+.=|++.+... .+.+-++|+.+.+-..+ ...+..|.+..+..+.-. .+-++..+|
T Consensus 168 -i~~g~~~~D~~~dpdgry~~va~~~-------sn~i~viD~~~~k~v~~--i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 168 -IKVGRFPHDGGFDPDGRYFLVAANG-------SNKIAVIDTKTGKLVAL--IDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp -EE--TTEEEEEE-TTSSEEEEEEGG-------GTEEEEEETTTTEEEEE--EE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred -ecccccccccccCcccceeeecccc-------cceeEEEeeccceEEEE--eeccccccccccccccCCCcceEEeecc
Confidence 2456666766655333233334322 46888899887654332 222344555555444333 234555555
Q ss_pred CCCCCCCccCCCCCCceeeeEEEEeC----CCCeeEEeccCCCCCCCceeeEEEEEC--CeEEEeccccccccCcccccc
Q 006473 254 YSKEVSTDKNQSEKGIIHSDLWSLDP----RTWEWSKVKKIGMPPGPRAGFSMCVHK--KRALLFGGVVDMEMKGDVIMS 327 (643)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~----~t~~W~~l~~~g~~P~~R~g~s~~~~~--~~iyvfGG~~~~~~~~~~~~~ 327 (643)
.... .-.+.--++ ....|+.+... +....++.+..+. .++|+-= ..+
T Consensus 238 ~~~~-------------~~~~ig~~~v~v~d~~~wkvv~~I---~~~G~glFi~thP~s~~vwvd~-~~~---------- 290 (369)
T PF02239_consen 238 LGYF-------------AIPLIGTDPVSVHDDYAWKVVKTI---PTQGGGLFIKTHPDSRYVWVDT-FLN---------- 290 (369)
T ss_dssp SSSS-------------EEEEEE--TTT-STTTBTSEEEEE---E-SSSS--EE--TT-SEEEEE--TT-----------
T ss_pred ccce-------------ecccccCCccccchhhcCeEEEEE---ECCCCcceeecCCCCccEEeec-cCC----------
Confidence 4322 111222232 34678877654 3333444555553 3344420 111
Q ss_pred ccCCcEEEEECCCC
Q 006473 328 LFLNELYGFQLDNH 341 (643)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (643)
.-.+.|.++|..+.
T Consensus 291 ~~~~~v~viD~~tl 304 (369)
T PF02239_consen 291 PDADTVQVIDKKTL 304 (369)
T ss_dssp SSHT-EEEEECCGT
T ss_pred CCCceEEEEECcCc
Confidence 11467999999887
No 165
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=47.97 E-value=3e+02 Score=27.63 Aligned_cols=204 Identities=13% Similarity=0.122 Sum_probs=96.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECC-CCcEEEecC---C---CCCCCceeeEEEEECCEEEEEeCccCCCCCCcce
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISS---P---NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~-~~~W~~l~s---~---~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~ 153 (643)
+++|+||..............-.+.+..+ -.+|..... . ..+.+-.++.+..-++.|++.. ..... .
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~-----~ 131 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESG-----G 131 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESS-----C
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eeccc-----c
Confidence 68888886321111110111112356666 458986542 1 1111222222333477887762 11111 1
Q ss_pred ecCeEEEEECCC-CcEEEeccCCCCCCCceeEEEE-E-CCEEEEEeeeecCCCceeeeccEEEEEcC-CCceEEeccCCC
Q 006473 154 HYKDFWMLDLKT-NQWEQLNLKGCPSPRSGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFG 229 (643)
Q Consensus 154 ~~~dv~~yD~~t-~~W~~~~~~g~P~~Rs~h~~~~-~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~ 229 (643)
....+..|.... .+|+...... +.....+.+.+ . ++.|+++--.. .. ...++.+... -.+|+.+....
T Consensus 132 ~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-----~~~~~~~S~D~G~TWs~~~~~~- 203 (275)
T PF13088_consen 132 SFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-----DDIYISRSTDGGRTWSPPQPTN- 203 (275)
T ss_dssp EEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS-----TEEEEEEESSTTSS-EEEEEEE-
T ss_pred CcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC-----CcEEEEEECCCCCcCCCceecc-
Confidence 234455565554 4699887621 22233344433 2 67888875432 11 0223333333 35699866331
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceee-EEEEE-C
Q 006473 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-K 306 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~-s~~~~-~ 306 (643)
.|.+..+..++.+ ++.++++...... ...-.+++-.-...+|..+......|...+++ +++.+ +
T Consensus 204 --~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~d 270 (275)
T PF13088_consen 204 --LPNPNSSISLVRLSDGRLLLVYNNPDG-----------RSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPD 270 (275)
T ss_dssp --CSSCCEEEEEEECTTSEEEEEEECSST-----------SEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEET
T ss_pred --cCcccCCceEEEcCCCCEEEEEECCCC-----------CCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCC
Confidence 2555555555554 6688877763211 22233444344578998775432223233444 44555 5
Q ss_pred CeEEE
Q 006473 307 KRALL 311 (643)
Q Consensus 307 ~~iyv 311 (643)
++|+|
T Consensus 271 g~l~i 275 (275)
T PF13088_consen 271 GKLYI 275 (275)
T ss_dssp TEEEE
T ss_pred CcCCC
Confidence 68876
No 166
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=47.54 E-value=3.9e+02 Score=28.75 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=110.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEE-EecCCCCCCCce-------eeEEEEECCEEEEEeCccCCCCCCcc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRS-------AHQAVSWKNYLYIFGGEFTSPNQERF 152 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~-~l~s~~~P~pRs-------~ha~~~~~~~iyvfGG~~~~~~~~~~ 152 (643)
+..||+.-..+.-+....-.+.|-+||+.+.+-. .++.+ |.||. .+++..-+..|||+- + +
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n-~--~------ 125 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQ-F--S------ 125 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEec-C--C------
Confidence 5678888775443433334577889999998654 45443 34452 222222255688762 1 1
Q ss_pred eecCeEEEEECCCCcEEE-eccCCC----CCCCceeEEEEECCE-EE---------------EEee------eec-----
Q 006473 153 HHYKDFWMLDLKTNQWEQ-LNLKGC----PSPRSGHRMVLYKHK-II---------------VFGG------FYD----- 200 (643)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~-~~~~g~----P~~Rs~h~~~~~~~~-ly---------------vfGG------~~~----- 200 (643)
.-+.+-++|+.+++-.. ++..++ |.....+.+.+.++. ++ +|-+ ...
T Consensus 126 -p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 126 -PSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred -CCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 13568888988877543 433222 333333333333332 22 2222 100
Q ss_pred CCC--ceeeeccEEEEEcCC------CceEEeccCCC--CCCCCCccceeEEEeCCEEEEE--cCCCCCCCCccCCCCCC
Q 006473 201 TLR--EVRYYNDLYVFDLDQ------FKWQEIKPRFG--SMWPSPRSGFQFFVYQDEVFLY--GGYSKEVSTDKNQSEKG 268 (643)
Q Consensus 201 ~~~--~~~~~~dv~~yD~~t------~~W~~v~~~~~--~~~P~~R~~~s~~~~~~~iyv~--GG~~~~~~~~~~~~~~~ 268 (643)
.+. ...+...|+..|+.. ..|..+..... +-.|...-..++..-++++||. ||-.+. .-
T Consensus 205 dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t---------hk 275 (352)
T TIGR02658 205 SGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT---------HK 275 (352)
T ss_pred CCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc---------cc
Confidence 000 011346777777432 23655543311 1112222222222237888874 222111 01
Q ss_pred ceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CC-eEEEeccccccccCccccccccCCcEEEEECCCCc
Q 006473 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~-~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
..-+.+|++|+.+.+-...-. ..+.-+++++- +. .+|+.-+. .++|.++|+.+.+
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~--------------s~~VsViD~~t~k 333 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTG--------------DKTLYIFDAETGK 333 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCC--------------CCcEEEEECcCCe
Confidence 233579999987665444332 33444555554 33 56655543 4679999988764
No 167
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=47.49 E-value=3.3e+02 Score=27.93 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=70.8
Q ss_pred CCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEE---EECCCCcE-EEecCCCCCCCceeeEEEEECCEEEEEeCc
Q 006473 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYR---YDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGE 143 (643)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~---yd~~~~~W-~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~ 143 (643)
.-.-|+++.+ ++.-|.+|=...+-.++. +.-+|+ |+.-...- +.+++- ....-+.-++-.+++.||+.--.
T Consensus 135 vTe~HSFa~i---~~~~fA~GyHnGD~sPRe-~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRg 209 (367)
T PF12217_consen 135 VTELHSFATI---DDNQFAVGYHNGDVSPRE-LGFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRG 209 (367)
T ss_dssp -SEEEEEEE----SSS-EEEEEEE-SSSS-E-EEEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEE
T ss_pred eeeeeeeeEe---cCCceeEEeccCCCCcce-eeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcC
Confidence 4456888888 566677775433333322 233332 11111111 233322 11222344455569999998532
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecC------CCceee---eccEEE-
Q 006473 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT------LREVRY---YNDLYV- 213 (643)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~------~~~~~~---~~dv~~- 213 (643)
..... .=+.+.+-+.....|..+..+ ...-.+..-.+.+++.||+||--..- ....+| ....+.
T Consensus 210 t~~~~-----~GS~L~rs~d~G~~w~slrfp-~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~ 283 (367)
T PF12217_consen 210 TLPTN-----PGSSLHRSDDNGQNWSSLRFP-NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFML 283 (367)
T ss_dssp S-TTS--------EEEEESSTTSS-EEEE-T-T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEE
T ss_pred cCCCC-----CcceeeeecccCCchhhcccc-ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEE
Confidence 22211 124566667777789988752 11122233446679999999863211 001111 111111
Q ss_pred ------EEcCCCceEEeccC--CCCCCCCCccceeEEEeCCEE-EEEcCCC
Q 006473 214 ------FDLDQFKWQEIKPR--FGSMWPSPRSGFQFFVYQDEV-FLYGGYS 255 (643)
Q Consensus 214 ------yD~~t~~W~~v~~~--~~~~~P~~R~~~s~~~~~~~i-yv~GG~~ 255 (643)
+.+..-.|..|... .++...++..--++|+-++-| |||||-+
T Consensus 284 k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 284 KVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp EEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred EeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 14445567766543 122223343334445557765 5778754
No 168
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=46.78 E-value=6.8e+02 Score=31.30 Aligned_cols=208 Identities=11% Similarity=0.045 Sum_probs=104.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCC--------CC--ceeeEEEEE--CCEEEEEeCccCCCC
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP--------PP--RSAHQAVSW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P--------~p--Rs~ha~~~~--~~~iyvfGG~~~~~~ 148 (643)
++.|||.-= ..+.|.+||+....-..+...... .. ..-+.+++. ++.|||.-..
T Consensus 579 ~g~lyVaDs---------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~----- 644 (1057)
T PLN02919 579 NNRLFISDS---------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE----- 644 (1057)
T ss_pred CCeEEEEEC---------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-----
Confidence 467777542 125788888876543333321100 00 112444444 4678887543
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCC-------------CCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEE
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-------------PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~-------------~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~ 213 (643)
.+.+.++|+.++.=+.+...+... -..-+.+++- ++.|||.... .+.+++
T Consensus 645 ------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---------~~~I~v 709 (1057)
T PLN02919 645 ------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---------QHQIWE 709 (1057)
T ss_pred ------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---------CCeEEE
Confidence 145788888877655553322100 0111233333 5688876432 356889
Q ss_pred EEcCCCceEEeccCC-----CCCCC---CCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 214 FDLDQFKWQEIKPRF-----GSMWP---SPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 214 yD~~t~~W~~v~~~~-----~~~~P---~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
||+.+.....+.... .+..+ .-..-..+++. ++.|||....+. .+.+||+.+..
T Consensus 710 ~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~----------------~Irv~D~~tg~ 773 (1057)
T PLN02919 710 YNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS----------------SIRALDLKTGG 773 (1057)
T ss_pred EECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC----------------eEEEEECCCCc
Confidence 998776554432110 00000 00111123333 456888765543 38888887654
Q ss_pred eEEeccCCC--CCC--------------Cce--eeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEE
Q 006473 284 WSKVKKIGM--PPG--------------PRA--GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (643)
Q Consensus 284 W~~l~~~g~--~P~--------------~R~--g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (643)
...+.. +. .+. .+. -.++++. ++.+||.... .+.|.+||+.++...
T Consensus 774 ~~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--------------N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 774 SRLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--------------NHKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--------------CCEEEEEECCCCeEE
Confidence 332211 00 000 001 1233333 4678777643 356999999988877
Q ss_pred EeEe
Q 006473 345 PLEL 348 (643)
Q Consensus 345 ~l~~ 348 (643)
.+..
T Consensus 839 tiaG 842 (1057)
T PLN02919 839 TLAG 842 (1057)
T ss_pred EEec
Confidence 6664
No 169
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=46.41 E-value=1.9e+02 Score=28.11 Aligned_cols=70 Identities=14% Similarity=0.296 Sum_probs=44.2
Q ss_pred ecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE---CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~---~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
-...+|++|+.++.|..+.....+ ..+..--+.| .+.++++|..+++-. --..||+|++.++.-+.+...
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG~a~GTvS---~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIGYAHGTVS---KGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcc-cccCCceeEEecCCcEEEEEccccceEc---cCCeEEEEEccCCceeEeeec
Confidence 356788888888888766542211 1333334555 345667775544321 235799999999988877765
No 170
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=46.27 E-value=3.2e+02 Score=30.20 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=11.6
Q ss_pred eccEEEEEcCCCce
Q 006473 208 YNDLYVFDLDQFKW 221 (643)
Q Consensus 208 ~~dv~~yD~~t~~W 221 (643)
.+..|+||..++.|
T Consensus 306 p~~tlcyD~at~~~ 319 (469)
T PF11134_consen 306 PRKTLCYDAATSQW 319 (469)
T ss_pred CCceEEEEcccCCc
Confidence 46889999999865
No 171
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=46.23 E-value=4.6e+02 Score=29.14 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=51.2
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (643)
..+++||...+.=......+.+... ++++. ..+.+++.|+.+ ..|.++|+.+.+-...-. .
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D---------~tvriWd~~~~~~~~~l~-------~ 286 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD---------GTVRIWDVRTGECVRKLK-------G 286 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC---------CcEEEEeccCCeEEEeee-------c
Confidence 3577888844422212222333343 22222 355889998864 468888888744322211 1
Q ss_pred CccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 006473 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (643)
Q Consensus 235 ~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (643)
...+-+.+.+ ++.+++.+.+++. +.+||+.+..
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~----------------i~vwd~~~~~ 321 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGT----------------IRVWDLETGS 321 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCcc----------------EEEEECCCCc
Confidence 1112222222 7778888877655 7888887766
No 172
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=46.05 E-value=2.9e+02 Score=26.89 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=44.2
Q ss_pred ceeeccEEEEECCCCcEEEecCCCC---CCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEecc
Q 006473 97 TYVYGDLYRYDVEKQEWKVISSPNS---PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (643)
Q Consensus 97 ~~~~ndv~~yd~~~~~W~~l~s~~~---P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (643)
......+|.+|..++.|..+...+. -.|. ..-+.-..+-++|+|..++.-.. =..||+|++.++.-+.+..
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK-~i~WiDD~~L~vIIG~a~GTvS~-----GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK-YIEWIDDNNLAVIIGYAHGTVSK-----GGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCc-eeEEecCCcEEEEEccccceEcc-----CCeEEEEEccCCceeEeee
Confidence 3457899999999999886643322 1344 11111114456677744333221 2579999999999888765
No 173
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=45.78 E-value=4.5e+02 Score=30.41 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=68.0
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCC----CceeeEEEEECCEEEE
Q 006473 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP----PRSAHQAVSWKNYLYI 139 (643)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~----pRs~ha~~~~~~~iyv 139 (643)
..|..+...+.+.....++++|+.-- ..-++..+...+.+-+.+.+-. |. +-+.-.....++.|-+
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s~---------~~~~le~~el~~ps~kel~~~~-~~~~~~~I~~l~~SsdG~yiaa 492 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVSK---------NIFSLEEFELETPSFKELKSIQ-SQAKCPSISRLVVSSDGNYIAA 492 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEec---------ccceeEEEEecCcchhhhhccc-cccCCCcceeEEEcCCCCEEEE
Confidence 34444434333333333566666551 1235666776666655443221 11 1222222233788888
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEE---ECCEEEEEeeeecCCCceeeeccEEEEEc
Q 006473 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (643)
Q Consensus 140 fGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~---~~~~lyvfGG~~~~~~~~~~~~dv~~yD~ 216 (643)
+++. ..+++||+++.+-..+.+. + .+..-+|.. ..+.|++.- ..|.++.||+
T Consensus 493 ~~t~------------g~I~v~nl~~~~~~~l~~r--l-n~~vTa~~~~~~~~~~lvvat----------s~nQv~efdi 547 (691)
T KOG2048|consen 493 ISTR------------GQIFVYNLETLESHLLKVR--L-NIDVTAAAFSPFVRNRLVVAT----------SNNQVFEFDI 547 (691)
T ss_pred Eecc------------ceEEEEEcccceeecchhc--c-CcceeeeeccccccCcEEEEe----------cCCeEEEEec
Confidence 8753 5799999999887766541 1 133333332 245666542 2477888888
Q ss_pred CC---CceEEecc
Q 006473 217 DQ---FKWQEIKP 226 (643)
Q Consensus 217 ~t---~~W~~v~~ 226 (643)
.. ..|.....
T Consensus 548 ~~~~l~~ws~~nt 560 (691)
T KOG2048|consen 548 EARNLTRWSKNNT 560 (691)
T ss_pred chhhhhhhhhccc
Confidence 42 44655443
No 174
>smart00284 OLF Olfactomedin-like domains.
Probab=43.78 E-value=3.8e+02 Score=27.48 Aligned_cols=154 Identities=11% Similarity=0.102 Sum_probs=79.6
Q ss_pred CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCc---------ee---EEEEE
Q 006473 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS---------GH---RMVLY 188 (643)
Q Consensus 121 ~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs---------~h---~~~~~ 188 (643)
+|.+-.|-..+++++.+|..-.. .+.+.+||+.+++-..... +|.+.+ ++ -.++-
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~~-----------s~~iiKydL~t~~v~~~~~--Lp~a~y~~~~~Y~~~~~sdiDlAvD 136 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKFN-----------SHDICRFDLTTETYQKEPL--LNGAGYNNRFPYAWGGFSDIDLAVD 136 (255)
T ss_pred CCCccccccEEEECceEEEEecC-----------CccEEEEECCCCcEEEEEe--cCccccccccccccCCCccEEEEEc
Confidence 45566777888889999986432 3679999999987543322 232211 11 12233
Q ss_pred CCEEEEEeeeecCCCceeeeccEEEEEcCCC----ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCC
Q 006473 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264 (643)
Q Consensus 189 ~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~ 264 (643)
.+-|+++=....+.. .--|-.+|+.+. +|..-. +.+..+-++.+ =|.||++-....
T Consensus 137 E~GLWvIYat~~~~g----~ivvSkLnp~tL~ve~tW~T~~-------~k~sa~naFmv-CGvLY~~~s~~~-------- 196 (255)
T smart00284 137 ENGLWVIYATEQNAG----KIVISKLNPATLTIENTWITTY-------NKRSASNAFMI-CGILYVTRSLGS-------- 196 (255)
T ss_pred CCceEEEEeccCCCC----CEEEEeeCcccceEEEEEEcCC-------CcccccccEEE-eeEEEEEccCCC--------
Confidence 445555533222111 112335566543 455422 33334444444 467888753221
Q ss_pred CCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE---CCeEEEec
Q 006473 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH---KKRALLFG 313 (643)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~---~~~iyvfG 313 (643)
....-.+.||+.+.+=..+.. ..|.+...++|.-. +.+||++-
T Consensus 197 ----~~~~I~yayDt~t~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 197 ----KGEKVFYAYDTNTGKEGHLDI--PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred ----CCcEEEEEEECCCCccceeee--eeccccccceeceeCCCCCeEEEEe
Confidence 122346889988876443322 12334444555544 46777764
No 175
>PTZ00420 coronin; Provisional
Probab=42.31 E-value=5.9e+02 Score=29.35 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=26.1
Q ss_pred eEEEEECCCCcEE-EeccCCCCCCCceeEEEE-ECCEEEEEeeeecCCCceeeeccEEEEEcCCCc
Q 006473 157 DFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (643)
Q Consensus 157 dv~~yD~~t~~W~-~~~~~g~P~~Rs~h~~~~-~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~ 220 (643)
.+.+||+.+.+=. .+. .+ ..-+++.. .++.+++.++.+ ..+.+||+.+..
T Consensus 149 tIrIWDl~tg~~~~~i~---~~--~~V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN---MP--KKLSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEECCCCcEEEEEe---cC--CcEEEEEECCCCCEEEEEecC---------CEEEEEECCCCc
Confidence 4678888776411 111 11 11122222 256676666532 458889987653
No 176
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=41.47 E-value=4.7e+02 Score=27.97 Aligned_cols=102 Identities=15% Similarity=0.255 Sum_probs=54.3
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCcee-------eEEEEECCEEEEEeCccCCCCCCc
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSA-------HQAVSWKNYLYIFGGEFTSPNQER 151 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~-------ha~~~~~~~iyvfGG~~~~~~~~~ 151 (643)
+..+|+..=.+--+.......-|-.||+.+-+ +...-+ |.||.. .++..-+..+||+- -+
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP---~k~R~~~~~~~~~~~ls~dgk~~~V~N---~T----- 115 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP---PKPRAQVVPYKNMFALSADGKFLYVQN---FT----- 115 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET---TS-B--BS--GGGEEE-TTSSEEEEEE---ES-----
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC---CcchheecccccceEEccCCcEEEEEc---cC-----
Confidence 46677766655445544556678889999984 332211 122432 22222356777762 22
Q ss_pred ceecCeEEEEECCCCcEE-EeccCCC----CCCCceeEEEEECCEEEEE
Q 006473 152 FHHYKDFWMLDLKTNQWE-QLNLKGC----PSPRSGHRMVLYKHKIIVF 195 (643)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~-~~~~~g~----P~~Rs~h~~~~~~~~lyvf 195 (643)
.-..|-+.|+..++.- .++.+|+ |.+-.++.+.+-++.|..+
T Consensus 116 --Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 116 --PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp --SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred --CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEE
Confidence 3467889999988764 3444332 4333344454445544433
No 177
>PTZ00420 coronin; Provisional
Probab=41.18 E-value=6.2e+02 Score=29.21 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=45.0
Q ss_pred ccEEEEECCCCcEE-EecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCC
Q 006473 101 GDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (643)
Q Consensus 101 ndv~~yd~~~~~W~-~l~s~~~P~pRs~ha~~~~-~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~ 178 (643)
+.+.+||+.+.+=. .+.. +. .-+++... ++.+++.|+.. ..+.+||+.+.+-.. ....+.
T Consensus 148 gtIrIWDl~tg~~~~~i~~---~~--~V~SlswspdG~lLat~s~D-----------~~IrIwD~Rsg~~i~--tl~gH~ 209 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINM---PK--KLSSLKWNIKGNLLSGTCVG-----------KHMHIIDPRKQEIAS--SFHIHD 209 (568)
T ss_pred CeEEEEECCCCcEEEEEec---CC--cEEEEEECCCCCEEEEEecC-----------CEEEEEECCCCcEEE--EEeccc
Confidence 36778888876421 1211 11 11222222 56677766532 357889998764221 100111
Q ss_pred CCceeEEEE-----ECCEEEEEeeeecCCCceeeeccEEEEEcCC
Q 006473 179 PRSGHRMVL-----YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (643)
Q Consensus 179 ~Rs~h~~~~-----~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t 218 (643)
.......+. .++..++.+|++... ...+.+||+.+
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~-----~R~VkLWDlr~ 249 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNN-----MREMKLWDLKN 249 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCC-----ccEEEEEECCC
Confidence 111111111 234556666665421 23588888764
No 178
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.55 E-value=4.4e+02 Score=28.55 Aligned_cols=156 Identities=17% Similarity=0.242 Sum_probs=76.5
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEEC--CCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeee-cCCCceeeeccE
Q 006473 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFY-DTLREVRYYNDL 211 (643)
Q Consensus 135 ~~iyvfGG~~~~~~~~~~~~~~dv~~yD~--~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~-~~~~~~~~~~dv 211 (643)
-.|+.+||.-. .+.+-+||+ ....|+.-.. |.-+-+...-+|.--|-.+-|.. ........+..|
T Consensus 161 p~Iva~GGke~---------~n~lkiwdle~~~qiw~aKNv---pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 161 PYIVATGGKEN---------INELKIWDLEQSKQIWSAKNV---PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceEecCchhc---------ccceeeeecccceeeeeccCC---CCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 46889999632 244444444 4456765443 55555555555533322222210 000001135678
Q ss_pred EEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 212 YVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 212 ~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
-.||+.... -..+... -.+.+.-+.++ .+..+++|-+.+ ++..||+.+..--....
T Consensus 229 R~YDt~~qRRPV~~fd~~-----E~~is~~~l~p-~gn~Iy~gn~~g----------------~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQFDFL-----ENPISSTGLTP-SGNFIYTGNTKG----------------QLAKFDLRGGKLLGCGL 286 (412)
T ss_pred EEecCcccCcceeEeccc-----cCcceeeeecC-CCcEEEEecccc----------------hhheecccCceeecccc
Confidence 889987543 1111111 22333222222 444444554433 47788887765443322
Q ss_pred CCCCCCCceeeEEEEEC-CeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 290 IGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 290 ~g~~P~~R~g~s~~~~~-~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
.|..-+.| ++..|. ..++..+|.+. .|-+||+.++
T Consensus 287 kg~tGsir---sih~hp~~~~las~GLDR--------------yvRIhD~ktr 322 (412)
T KOG3881|consen 287 KGITGSIR---SIHCHPTHPVLASCGLDR--------------YVRIHDIKTR 322 (412)
T ss_pred CCccCCcc---eEEEcCCCceEEeeccce--------------eEEEeecccc
Confidence 22222223 344554 47888888643 3788998874
No 179
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=38.24 E-value=17 Score=35.64 Aligned_cols=14 Identities=7% Similarity=0.575 Sum_probs=8.2
Q ss_pred hhhccccCCCCCCC
Q 006473 505 SEWVEASEGEDEDD 518 (643)
Q Consensus 505 ~~w~~~~~~~~~~~ 518 (643)
..|+++++..+.++
T Consensus 232 ekWl~~~~~~~ts~ 245 (303)
T COG5129 232 EKWLGSDQSMETSE 245 (303)
T ss_pred HHHhccccchhccc
Confidence 45998765544333
No 180
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=37.56 E-value=17 Score=36.61 Aligned_cols=7 Identities=29% Similarity=0.838 Sum_probs=3.6
Q ss_pred CCEEEEE
Q 006473 245 QDEVFLY 251 (643)
Q Consensus 245 ~~~iyv~ 251 (643)
++.+|||
T Consensus 57 ~g~~yLy 63 (303)
T KOG3064|consen 57 NGVLYLY 63 (303)
T ss_pred CCEEEEE
Confidence 4555554
No 181
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=37.54 E-value=5.1e+02 Score=27.20 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=49.5
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCC
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~R 180 (643)
+.|-+||+.+..=..+.....|. |+-+-. .....+|.||+.. .+-.+|+.... .....-.+-
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i-~ci~~~--~~~~~vIsgsWD~-----------~ik~wD~R~~~----~~~~~d~~k 136 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGI-RCIEYS--YEVGCVISGSWDK-----------TIKFWDPRNKV----VVGTFDQGK 136 (323)
T ss_pred ceEEEEEecCCcceeeccCCCce-EEEEee--ccCCeEEEcccCc-----------cEEEEeccccc----cccccccCc
Confidence 46788999888766665544222 211111 2456778888754 35567776511 111112222
Q ss_pred ceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 181 s~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
.-.+|.+.++.|+| |+. -..+..||+.+.
T Consensus 137 kVy~~~v~g~~LvV-g~~---------~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVV-GTS---------DRKVLIYDLRNL 165 (323)
T ss_pred eEEEEeccCCEEEE-eec---------CceEEEEEcccc
Confidence 34455555666554 543 256888988754
No 182
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.34 E-value=4.6e+02 Score=26.63 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=53.6
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeE----EEEEC--CEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHR----MVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~----~~~~~--~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (643)
+-+..+|..|++--+- -.+|. .+.+| ..+++-|+++ ..+.+||..++....+...
T Consensus 81 k~v~vwDV~TGkv~Rr--------~rgH~aqVNtV~fNeesSVv~SgsfD---------~s~r~wDCRS~s~ePiQil-- 141 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--------FRGHLAQVNTVRFNEESSVVASGSFD---------SSVRLWDCRSRSFEPIQIL-- 141 (307)
T ss_pred ceEEEEEcccCeeeee--------cccccceeeEEEecCcceEEEecccc---------ceeEEEEcccCCCCccchh--
Confidence 4578899988763221 11232 23343 3566667763 5688899998887777666
Q ss_pred CCCCCCccceeEEEeCCEEEEEcCCCCC
Q 006473 230 SMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (643)
Q Consensus 230 ~~~P~~R~~~s~~~~~~~iyv~GG~~~~ 257 (643)
...+-+-..+.+.+..+|.|-.++.
T Consensus 142 ---dea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 142 ---DEAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred ---hhhcCceeEEEecccEEEeeccCCc
Confidence 6677777778888888888877665
No 183
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=36.53 E-value=12 Score=35.08 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=4.2
Q ss_pred cCeEEEecce
Q 006473 463 KDTLYVYGGM 472 (643)
Q Consensus 463 ~~~Lyi~GG~ 472 (643)
.+-+||.|-.
T Consensus 96 sGPVhisG~~ 105 (149)
T PF03066_consen 96 SGPVHISGQH 105 (149)
T ss_dssp SS-EEEEEEE
T ss_pred CCCEEeeCcc
Confidence 3445555544
No 184
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.50 E-value=4.4e+02 Score=28.55 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=48.5
Q ss_pred ecCeEEEEECCCCcEEEeccCC-CCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCC
Q 006473 154 HYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (643)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~g-~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (643)
.+..+-.||+.... +.+.... +-.+.+..+.+. ++..+++|- +...+-.||+.+.+---.... +..
T Consensus 224 ~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn---------~~g~l~~FD~r~~kl~g~~~k--g~t 290 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTP-SGNFIYTGN---------TKGQLAKFDLRGGKLLGCGLK--GIT 290 (412)
T ss_pred cceeEEEecCcccC-cceeEeccccCcceeeeecC-CCcEEEEec---------ccchhheecccCceeeccccC--Ccc
Confidence 35678899997543 2222111 122333322222 344444443 256788899877642222111 111
Q ss_pred CCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCC
Q 006473 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (643)
Q Consensus 233 P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (643)
-..|+ +..+ ...++..+|.+.. +-+||..+
T Consensus 291 Gsirs---ih~hp~~~~las~GLDRy----------------vRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRS---IHCHPTHPVLASCGLDRY----------------VRIHDIKT 321 (412)
T ss_pred CCcce---EEEcCCCceEEeecccee----------------EEEeeccc
Confidence 22222 2233 4468888888765 66788766
No 185
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=35.96 E-value=8.1e+02 Score=29.06 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccE
Q 006473 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 134 ~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
++.+++.|+..+ .|-+||..++-.. +.. ...-++++++.+ .++.++.--.+ ..|
T Consensus 361 Dgq~iaTG~eDg-----------KVKvWn~~SgfC~-vTF---teHts~Vt~v~f~~~g~~llssSLD---------GtV 416 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----------KVKVWNTQSGFCF-VTF---TEHTSGVTAVQFTARGNVLLSSSLD---------GTV 416 (893)
T ss_pred CCcEEEeccCCC-----------cEEEEeccCceEE-EEe---ccCCCceEEEEEEecCCEEEEeecC---------CeE
Confidence 678888888643 3556776554332 221 234555666554 45555543332 245
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEec
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (643)
-.||+..++=.+--.. |.|+...++++- .+.|++.|+.+. -++++++.+|.+--.+-
T Consensus 417 RAwDlkRYrNfRTft~-----P~p~QfscvavD~sGelV~AG~~d~---------------F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTS-----PEPIQFSCVAVDPSGELVCAGAQDS---------------FEIFVWSVQTGQLLDIL 474 (893)
T ss_pred EeeeecccceeeeecC-----CCceeeeEEEEcCCCCEEEeeccce---------------EEEEEEEeecCeeeehh
Confidence 5666655432222222 555554444443 477888887643 35788888887655543
No 186
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=35.04 E-value=6.6e+02 Score=27.77 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=40.0
Q ss_pred eeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc
Q 006473 98 YVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (643)
Q Consensus 98 ~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~ 167 (643)
.+.|++|++|-.-+---+++-.. |..|. +++-..++.+||.- |....-++..|++.-+
T Consensus 403 e~~N~vYilDe~lnvvGkltGl~-~gERI-YAvRf~gdv~yiVT----------frqtDPlfviDlsNPe 460 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTGLA-PGERI-YAVRFVGDVLYIVT----------FRQTDPLFVIDLSNPE 460 (603)
T ss_pred CccceeEEEcCCCcEEEEEeccC-CCceE-EEEEEeCceEEEEE----------EeccCceEEEEcCCCC
Confidence 37899999998888777776433 45554 45555688888874 2335568888887543
No 187
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=34.93 E-value=13 Score=43.95 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=0.0
Q ss_pred ccccchhhhhhhc
Q 006473 623 TQHTGKVCFHFSF 635 (643)
Q Consensus 623 ~~~~~k~~~~~~f 635 (643)
-.+..+++|+++|
T Consensus 761 ~A~Ace~Ar~~s~ 773 (787)
T PF03115_consen 761 WAHACEEARKVSS 773 (787)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhc
Confidence 3456788888887
No 188
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.73 E-value=4.4e+02 Score=26.94 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=44.0
Q ss_pred CCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecC
Q 006473 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 122 P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~ 201 (643)
-.|++.-+.|.-++.++|+- -+.+...|+.-.....|.+...-+-...++.|-|-||
T Consensus 220 gl~~s~iAS~SqDg~viIwt-------------------~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G---- 276 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIWT-------------------KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG---- 276 (299)
T ss_pred CCCceeeEEecCCCcEEEEE-------------------ecCccCcccccccccCCcceEEEEEeccccEEEEecC----
Confidence 35666666666666666653 2334566765433224555555444444666666666
Q ss_pred CCceeeeccEEEEEcC-CCceEEeccC
Q 006473 202 LREVRYYNDLYVFDLD-QFKWQEIKPR 227 (643)
Q Consensus 202 ~~~~~~~~dv~~yD~~-t~~W~~v~~~ 227 (643)
.|.+.+|-.. .++|.++...
T Consensus 277 ------dNkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 277 ------DNKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred ------CcEEEEEEeCCCCcEEEcccc
Confidence 3566666554 4589988643
No 189
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=34.50 E-value=22 Score=44.73 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=3.8
Q ss_pred CCeEEEecc
Q 006473 306 KKRALLFGG 314 (643)
Q Consensus 306 ~~~iyvfGG 314 (643)
+|.+|..|+
T Consensus 71 ~g~~y~~~~ 79 (2849)
T PTZ00415 71 NGGIYNLGD 79 (2849)
T ss_pred CCCEEeccC
Confidence 344444443
No 190
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=33.40 E-value=24 Score=42.53 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.8
Q ss_pred HHHHhhHh
Q 006473 43 ILLSIQKE 50 (643)
Q Consensus 43 ~l~~~~~~ 50 (643)
.|.+|..+
T Consensus 88 ml~Rf~~E 95 (840)
T PF04147_consen 88 MLERFTRE 95 (840)
T ss_pred HHHHHHHH
Confidence 44555444
No 191
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=32.38 E-value=35 Score=38.02 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=17.4
Q ss_pred EECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCcc
Q 006473 106 YDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (643)
Q Consensus 106 yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~ 144 (643)
=++..-.|+.+.... +-.+..-++.+|=|+|..
T Consensus 46 sei~~~~w~k~~r~~------~LrV~tk~g~~~~~~GF~ 78 (615)
T KOG0526|consen 46 SEIDKVKWQKGVRGY------GLRVFTKDGGVYRFDGFR 78 (615)
T ss_pred HHhhhhhhhhhcccc------ceEEEccCCceEEecCcC
Confidence 344555677664321 112222356788888853
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.27 E-value=1.1e+03 Score=29.39 Aligned_cols=194 Identities=15% Similarity=0.100 Sum_probs=91.8
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEE-----CCEEE
Q 006473 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-----KNYLY 138 (643)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~-----~~~iy 138 (643)
-.|.+|....++--....++||+-|+. ..+-++|..+..-. .. .|. ++..+++++ .+.++
T Consensus 1160 ~~~~~r~~~~v~dWqQ~~G~Ll~tGd~----------r~IRIWDa~~E~~~--~d--iP~-~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1160 QLPGARGTGLVVDWQQQSGHLLVTGDV----------RSIRIWDAHKEQVV--AD--IPY-GSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCccCCCCCeeeehhhhCCeEEecCCe----------eEEEEEecccceeE--ee--ccc-CCCccceeecccccCCceE
Confidence 456677655444443335778877773 34556676654322 11 111 233333333 45677
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCC-------CcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccE
Q 006473 139 IFGGEFTSPNQERFHHYKDFWMLDLKT-------NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDL 211 (643)
Q Consensus 139 vfGG~~~~~~~~~~~~~~dv~~yD~~t-------~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv 211 (643)
+.|=-++ .+-.||... ..|+.-.. +.+ --|...--++.-=++.|.. -.++
T Consensus 1225 ~AGfaDG-----------svRvyD~R~a~~ds~v~~~R~h~~---~~~-Iv~~slq~~G~~elvSgs~--------~G~I 1281 (1387)
T KOG1517|consen 1225 AAGFADG-----------SVRVYDRRMAPPDSLVCVYREHND---VEP-IVHLSLQRQGLGELVSGSQ--------DGDI 1281 (1387)
T ss_pred EEeecCC-----------ceEEeecccCCccccceeecccCC---ccc-ceeEEeecCCCcceeeecc--------CCeE
Confidence 7663222 355666532 22332221 111 2222222233333455543 2478
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCc-cc--e-eEEEe-CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 212 YVFDLDQFKWQEIKPRFGSMWPSPR-SG--F-QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R-~~--~-s~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
+.+|+... ....... . ..++ +| + ++.++ .--|+..|+. .. +-+|++....-..
T Consensus 1282 ~~~DlR~~--~~e~~~~-i--v~~~~yGs~lTal~VH~hapiiAsGs~-q~----------------ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1282 QLLDLRMS--SKETFLT-I--VAHWEYGSALTALTVHEHAPIIASGSA-QL----------------IKIYSLSGEQLNI 1339 (1387)
T ss_pred EEEecccC--cccccce-e--eeccccCccceeeeeccCCCeeeecCc-ce----------------EEEEecChhhhcc
Confidence 88888764 1222110 0 1111 23 2 34445 4457777765 22 5566655544433
Q ss_pred eccCCCCCCCcee--eEEEEECCeEEEeccccc
Q 006473 287 VKKIGMPPGPRAG--FSMCVHKKRALLFGGVVD 317 (643)
Q Consensus 287 l~~~g~~P~~R~g--~s~~~~~~~iyvfGG~~~ 317 (643)
+...+..-..|.+ .++++|..++.+.-|..+
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 3332222223444 456778888888888665
No 193
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.05 E-value=5.3e+02 Score=26.63 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEECC-EEEEEeeeecCCCceeeeccEEEEEcCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCc
Q 006473 185 MVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD 261 (643)
Q Consensus 185 ~~~~~~-~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~ 261 (643)
.+++++ +-||+=|.+ ...+-..|+.++. |..+ -..|.-.+++++++. +|+|-|++.
T Consensus 16 LVV~~dskT~v~igSH--------s~~~~avd~~sG~~~We~i--------lg~RiE~sa~vvgdf-VV~GCy~g~---- 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH--------SGIVIAVDPQSGNLIWEAI--------LGVRIECSAIVVGDF-VVLGCYSGG---- 74 (354)
T ss_pred EEEecCCceEEEEecC--------CceEEEecCCCCcEEeehh--------hCceeeeeeEEECCE-EEEEEccCc----
Q ss_pred cCCCCCCceeeeEEEEeCCCC--eeEEeccCCCCCCCceeeEEEEECCeEEEeccccccccCccccccccCCcEEEEECC
Q 006473 262 KNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (643)
Q Consensus 262 ~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (643)
+|+++..+. -|..+... .-...+.+..-.+-||+---... +|++|+.
T Consensus 75 ------------lYfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~glIycgshd~~---------------~yalD~~ 123 (354)
T KOG4649|consen 75 ------------LYFLCVKTGSQIWNFVILE----TVKVRAQCDFDGGLIYCGSHDGN---------------FYALDPK 123 (354)
T ss_pred ------------EEEEEecchhheeeeeehh----hhccceEEcCCCceEEEecCCCc---------------EEEeccc
Q ss_pred C
Q 006473 340 N 340 (643)
Q Consensus 340 t 340 (643)
+
T Consensus 124 ~ 124 (354)
T KOG4649|consen 124 T 124 (354)
T ss_pred c
No 194
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.70 E-value=7.4e+02 Score=27.35 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=32.1
Q ss_pred EEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccC
Q 006473 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (643)
Q Consensus 158 v~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (643)
|.+||+.... .++....+... +-....+ .+...+++|. .-.||.|+-.+..|+.+...
T Consensus 413 V~lwDLRKl~--n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~---------~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGS---------DLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEEEehhhc--ccceeeccccc-cceeEEEcCCCCeEEeecc---------eeEEEEEecccccceeeehh
Confidence 7888886554 22221122221 2223333 3445555553 23567778788999999877
No 195
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.55 E-value=47 Score=36.33 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=25.2
Q ss_pred HhcCCCCCCCCCCCCCcHHHHHHhhHHHHHHHHhh
Q 006473 587 ANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHE 621 (643)
Q Consensus 587 ~~~~~~d~~~~p~p~e~~~~f~~rt~~~w~~~~~~ 621 (643)
-+-.+++....|+| |+|-.|=.-..+.-+..+.+
T Consensus 204 lQKa~~~anqLP~~-ev~~lf~sd~~ee~st~lke 237 (483)
T KOG2773|consen 204 LQKADDDANQLPQP-EVLSLFKSDDEEELSTALKE 237 (483)
T ss_pred HHHhhhhhhcCCCh-hhHHHhhcccchhHHHHHHH
Confidence 34457789999999 99999977766666655543
No 196
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.42 E-value=8e+02 Score=27.65 Aligned_cols=172 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCC-C
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-P 177 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~--~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~-P 177 (643)
..||.++-.+..-..+.... +...+.+.+ .+..+.+|=..+. |.+||..+..=.+-.. . .
T Consensus 197 ~~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g~-----------v~iwD~~~~k~~~~~~--~~h 259 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDGT-----------VQIWDVKEQKKTRTLR--GSH 259 (484)
T ss_pred ceEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEeecCCe-----------EEEEehhhcccccccc--CCc
Q ss_pred CCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCCCC
Q 006473 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (643)
Q Consensus 178 ~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~iyv~GG~~~ 256 (643)
.+|.+ +..|+..++..|+. ...+..+|.....=..-... -....-|.+... ++..+.-||.+.
T Consensus 260 ~~rvg--~laW~~~~lssGsr---------~~~I~~~dvR~~~~~~~~~~-----~H~qeVCgLkws~d~~~lASGgnDN 323 (484)
T KOG0305|consen 260 ASRVG--SLAWNSSVLSSGSR---------DGKILNHDVRISQHVVSTLQ-----GHRQEVCGLKWSPDGNQLASGGNDN 323 (484)
T ss_pred CceeE--EEeccCceEEEecC---------CCcEEEEEEecchhhhhhhh-----cccceeeeeEECCCCCeeccCCCcc
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEE-------CCeEEEeccccccccCcccccccc
Q 006473 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-------KKRALLFGGVVDMEMKGDVIMSLF 329 (643)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~-------~~~iyvfGG~~~~~~~~~~~~~~~ 329 (643)
. +.++|. ....++..-..|.+++. ..-|+..||-..
T Consensus 324 ~----------------~~Iwd~---------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~------------ 366 (484)
T KOG0305|consen 324 V----------------VFIWDG---------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA------------ 366 (484)
T ss_pred c----------------eEeccC---------CCccccEEEeccceeeeEeeeCCCccCceEEcCCCc------------
Q ss_pred CCcEEEEECCCCc
Q 006473 330 LNELYGFQLDNHR 342 (643)
Q Consensus 330 ~ndl~~yd~~t~~ 342 (643)
-..|..||+.++.
T Consensus 367 D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 367 DRCIKFWNTNTGA 379 (484)
T ss_pred ccEEEEEEcCCCc
No 197
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=31.39 E-value=16 Score=34.19 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.3
Q ss_pred EEEEEC
Q 006473 333 LYGFQL 338 (643)
Q Consensus 333 l~~yd~ 338 (643)
-|.|++
T Consensus 17 ~~~f~~ 22 (149)
T PF03066_consen 17 DYTFKV 22 (149)
T ss_dssp EEEE-T
T ss_pred eEEEeC
Confidence 344444
No 198
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.34 E-value=98 Score=21.37 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=16.4
Q ss_pred eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 300 ~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.+.++.++++|+.+.. ..|++||+++
T Consensus 15 ~~~~v~~g~vyv~~~d---------------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD---------------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT---------------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC---------------CEEEEEeCCC
Confidence 4557778888877652 4599999864
No 199
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.22 E-value=3e+02 Score=27.43 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=65.0
Q ss_pred EEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccC
Q 006473 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (643)
Q Consensus 184 ~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~ 263 (643)
+....+++||.--|.++ .+.+.++|+.+.+=..-...+ |...+|-+.+.+++.+|+.--..+.
T Consensus 50 GL~~~~g~i~esTG~yg-------~S~ir~~~L~~gq~~~s~~l~----~~~~FgEGit~~gd~~y~LTw~egv------ 112 (262)
T COG3823 50 GLEYLDGHILESTGLYG-------FSKIRVSDLTTGQEIFSEKLA----PDTVFGEGITKLGDYFYQLTWKEGV------ 112 (262)
T ss_pred ceeeeCCEEEEeccccc-------cceeEEEeccCceEEEEeecC----CccccccceeeccceEEEEEeccce------
Confidence 45566888888888765 467899999876533323331 3455667778889999998776655
Q ss_pred CCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
-+.||+.+.. . .|..+-.--|-+++.-+..+++--|.
T Consensus 113 ----------af~~d~~t~~--~---lg~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 113 ----------AFKYDADTLE--E---LGRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred ----------eEEEChHHhh--h---hcccccCCcceeeecCCcceEeeCCc
Confidence 4567765432 2 23334455667777777777777664
No 200
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.18 E-value=38 Score=38.62 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=16.7
Q ss_pred hcCCCCCCCCCCCCCcHHHHHHh
Q 006473 588 NLGLSDSQRTPMPGESLKDFYRR 610 (643)
Q Consensus 588 ~~~~~d~~~~p~p~e~~~~f~~r 610 (643)
+.-..|-..|| |.+++|+=|.+
T Consensus 452 e~~fPDEvdt~-~d~~Arerfqk 473 (754)
T KOG1980|consen 452 ESEFPDEVDTP-PDESARERFQK 473 (754)
T ss_pred hhhCCCccccC-CChHHHHHHHH
Confidence 44577777777 78899988875
No 201
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=30.57 E-value=9.8e+02 Score=28.39 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=35.5
Q ss_pred EECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeecc
Q 006473 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYND 210 (643)
Q Consensus 132 ~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~d 210 (643)
+..+.+.++.|.+ ..+-++|..+.+..+- ++.. +-+++..+ +++.+|.|+.. ..
T Consensus 381 vS~d~~~~~Sga~-----------~SikiWn~~t~kciRT----i~~~-y~l~~~Fvpgd~~Iv~G~k~---------Ge 435 (888)
T KOG0306|consen 381 VSSDSILLASGAG-----------ESIKIWNRDTLKCIRT----ITCG-YILASKFVPGDRYIVLGTKN---------GE 435 (888)
T ss_pred eecCceeeeecCC-----------CcEEEEEccCcceeEE----eccc-cEEEEEecCCCceEEEeccC---------Cc
Confidence 3356666666643 3455667666554332 2223 66666666 55666666643 45
Q ss_pred EEEEEcCC
Q 006473 211 LYVFDLDQ 218 (643)
Q Consensus 211 v~~yD~~t 218 (643)
+.+||+.+
T Consensus 436 l~vfdlaS 443 (888)
T KOG0306|consen 436 LQVFDLAS 443 (888)
T ss_pred eEEEEeeh
Confidence 77888754
No 202
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=30.47 E-value=31 Score=39.99 Aligned_cols=7 Identities=14% Similarity=0.861 Sum_probs=3.9
Q ss_pred CeEEEec
Q 006473 464 DTLYVYG 470 (643)
Q Consensus 464 ~~Lyi~G 470 (643)
+.+|||-
T Consensus 802 DmvfIfK 808 (960)
T KOG1189|consen 802 DMVFIFK 808 (960)
T ss_pred eEEEEec
Confidence 3466663
No 203
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=30.24 E-value=17 Score=42.66 Aligned_cols=9 Identities=22% Similarity=0.050 Sum_probs=0.0
Q ss_pred CeEEEeccc
Q 006473 307 KRALLFGGV 315 (643)
Q Consensus 307 ~~iyvfGG~ 315 (643)
+.+|-||.+
T Consensus 343 dl~~~~~~~ 351 (713)
T PF03344_consen 343 DLWYNFGCH 351 (713)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 334555543
No 204
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=29.82 E-value=5.8e+02 Score=25.53 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=75.2
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCC-cEEEecCCCCCCCceeeEEEE-E-CCEEEEEeCccCCCCCCcceecCe
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVS-W-KNYLYIFGGEFTSPNQERFHHYKD 157 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~-~W~~l~s~~~P~pRs~ha~~~-~-~~~iyvfGG~~~~~~~~~~~~~~d 157 (643)
++.|++. .+.. ... ....++.|+.+.+ +|....... +.....+.+.+ . ++.|+++--.. .. -.-
T Consensus 118 ~G~l~~~--~~~~-~~~-~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-------~~~ 184 (275)
T PF13088_consen 118 DGRLIAP--YYHE-SGG-SFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-------DDI 184 (275)
T ss_dssp TTEEEEE--EEEE-SSC-EEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS-------TEE
T ss_pred CCCEEEE--Eeec-ccc-CcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC-------CcE
Confidence 6777776 2111 111 2344555666654 698775432 23244444443 3 67888875321 10 012
Q ss_pred EEEEECC-CCcEEEeccCCCCCCCceeEEEEE-CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 158 FWMLDLK-TNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 158 v~~yD~~-t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
.+.+... -.+|+......+|.+.++..++.+ ++.++++... ...+ ..-.+++-.-...+|..+.....+ +..
T Consensus 185 ~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r---~~l~l~~S~D~g~tW~~~~~i~~~--~~~ 258 (275)
T PF13088_consen 185 YISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNN-PDGR---SNLSLYVSEDGGKTWSRPKTIDDG--PNG 258 (275)
T ss_dssp EEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEEC-SSTS---EEEEEEEECTTCEEEEEEEEEEEE--E-C
T ss_pred EEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEEC-CCCC---CceEEEEEeCCCCcCCccEEEeCC--CCC
Confidence 3333333 347998765446777766665554 5688888772 1122 122233323336789877555211 222
Q ss_pred ccceeE-EEe-CCEEEE
Q 006473 236 RSGFQF-FVY-QDEVFL 250 (643)
Q Consensus 236 R~~~s~-~~~-~~~iyv 250 (643)
.+++.. +.. ++.|||
T Consensus 259 ~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 259 DSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEETTEEEE
T ss_pred cEECCeeEEeCCCcCCC
Confidence 344443 344 678886
No 205
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=29.82 E-value=8.3e+02 Score=27.35 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=72.1
Q ss_pred ccEEEEECCCCcEEEecCCCCCCCceeeEE------------EEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE
Q 006473 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQA------------VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW 168 (643)
Q Consensus 101 ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~------------~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W 168 (643)
.++|.|||.+..-..+... +|.-|.--.. +..++..+++=- -...+++++-.+--
T Consensus 287 GdIylydP~td~lekldI~-lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS------------RGkaFi~~~~~~~~ 353 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIG-LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS------------RGKAFIMRPWDGYS 353 (668)
T ss_pred CcEEEeCCCcCcceeeecC-CccccccccccccCHHHhhhhhccCCCcEEEEEe------------cCcEEEECCCCCee
Confidence 4899999999998887654 2444322111 111222222210 12244554433222
Q ss_pred EEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEE
Q 006473 169 EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEV 248 (643)
Q Consensus 169 ~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~i 248 (643)
-++...+ .-|+.| ....+.-.++|-.++ ..+-+||..+..-..+... .++.....+.-+++.
T Consensus 354 iqv~~~~--~VrY~r--~~~~~e~~vigt~dg--------D~l~iyd~~~~e~kr~e~~------lg~I~av~vs~dGK~ 415 (668)
T COG4946 354 IQVGKKG--GVRYRR--IQVDPEGDVIGTNDG--------DKLGIYDKDGGEVKRIEKD------LGNIEAVKVSPDGKK 415 (668)
T ss_pred EEcCCCC--ceEEEE--EccCCcceEEeccCC--------ceEEEEecCCceEEEeeCC------ccceEEEEEcCCCcE
Confidence 2332211 123322 223444666665543 4688899888876666543 333322222235565
Q ss_pred EEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEecc
Q 006473 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (643)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (643)
++++-... .+|.+|+.+..-..+..
T Consensus 416 ~vvaNdr~----------------el~vididngnv~~idk 440 (668)
T COG4946 416 VVVANDRF----------------ELWVIDIDNGNVRLIDK 440 (668)
T ss_pred EEEEcCce----------------EEEEEEecCCCeeEecc
Confidence 55554332 48899988877666543
No 206
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=5.9e+02 Score=25.45 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=62.0
Q ss_pred CCEEEEEcceecCCCCceeeccEEEEECCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 006473 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (643)
Q Consensus 81 ~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~--W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv 158 (643)
+++||.--|.+ -.+.+.++|+.+.+ |+.- .. |+.-++-..+.+++.+|+.-=. -.--
T Consensus 55 ~g~i~esTG~y-------g~S~ir~~~L~~gq~~~s~~--l~-~~~~FgEGit~~gd~~y~LTw~-----------egva 113 (262)
T COG3823 55 DGHILESTGLY-------GFSKIRVSDLTTGQEIFSEK--LA-PDTVFGEGITKLGDYFYQLTWK-----------EGVA 113 (262)
T ss_pred CCEEEEecccc-------ccceeEEEeccCceEEEEee--cC-CccccccceeeccceEEEEEec-----------ccee
Confidence 56677666653 23588999999664 4422 11 3445677788889999987421 1124
Q ss_pred EEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCC
Q 006473 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (643)
Q Consensus 159 ~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~ 219 (643)
+.||..+- ..+.. .+.+--|.+.+.-+..|++--| ...+..-||.+.
T Consensus 114 f~~d~~t~--~~lg~--~~y~GeGWgLt~d~~~LimsdG----------satL~frdP~tf 160 (262)
T COG3823 114 FKYDADTL--EELGR--FSYEGEGWGLTSDDKNLIMSDG----------SATLQFRDPKTF 160 (262)
T ss_pred EEEChHHh--hhhcc--cccCCcceeeecCCcceEeeCC----------ceEEEecCHHHh
Confidence 56776543 22222 3455566777777777776655 234555576654
No 207
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=7e+02 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=20.0
Q ss_pred eEEEEECCeEEEeccccccccCccccccccCCcEEEEECCCC
Q 006473 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 300 ~s~~~~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
..+++.-+.-||++|..+ ..|++||+++.
T Consensus 236 ~~a~ftPds~Fvl~gs~d-------------g~i~vw~~~tg 264 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDD-------------GTIHVWNLETG 264 (311)
T ss_pred eeEEECCCCcEEEEecCC-------------CcEEEEEcCCC
Confidence 456666666677777654 45999999664
No 208
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=28.18 E-value=6.7e+02 Score=25.72 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=58.7
Q ss_pred CeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCC
Q 006473 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (643)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (643)
..|-.+|..|.+=.+--. .+.+....-.. ..+.|+.+. |-..|-.+|+.+..--+-..+ |..
T Consensus 165 ~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs-~dG~ilTia----------~gssV~Fwdaksf~~lKs~k~-----P~n 226 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE--FNSPVTSLEVS-QDGRILTIA----------YGSSVKFWDAKSFGLLKSYKM-----PCN 226 (334)
T ss_pred CceEEEEeccCcEEEEEe--cCCCCcceeec-cCCCEEEEe----------cCceeEEeccccccceeeccC-----ccc
Confidence 567788888876433222 23443332222 234443331 112344555554432111122 443
Q ss_pred ccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEE---ECCeEEEe
Q 006473 236 RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV---HKKRALLF 312 (643)
Q Consensus 236 R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~---~~~~iyvf 312 (643)
....++-+ +..+||.||.... ++.||-.+..=.-.-.. ...|...|+ -++-+|..
T Consensus 227 V~SASL~P-~k~~fVaGged~~----------------~~kfDy~TgeEi~~~nk-----gh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 227 VESASLHP-KKEFFVAGGEDFK----------------VYKFDYNTGEEIGSYNK-----GHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred cccccccC-CCceEEecCcceE----------------EEEEeccCCceeeeccc-----CCCCceEEEEECCCCceeec
Confidence 33333222 4589999998765 77888666532221111 222222222 27889988
Q ss_pred ccccc
Q 006473 313 GGVVD 317 (643)
Q Consensus 313 GG~~~ 317 (643)
|-..+
T Consensus 285 GSEDG 289 (334)
T KOG0278|consen 285 GSEDG 289 (334)
T ss_pred cCCCc
Confidence 86644
No 209
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=28.10 E-value=7.2e+02 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=20.6
Q ss_pred EEEEeCCCCeeEEeccCCCCCCCceeeEEEEE--CCeEEEecc
Q 006473 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGG 314 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~--~~~iyvfGG 314 (643)
+-.||+...+=..+-. .+..-++.+.+.+ .|++++.|.
T Consensus 253 cRlyDlRaD~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYS---HDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eEEEeecCCcEEeeec---cCcccCCceeEEEcccccEEEeee
Confidence 6678877654322211 2333445444443 688887774
No 210
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.56 E-value=6.9e+02 Score=27.60 Aligned_cols=150 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCC
Q 006473 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTS 146 (643)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~ 146 (643)
.++....-.+.| +++-++|-.. .++.. ++|.||.....-.+++....... .-+....+..|+..-.....
T Consensus 236 ~~g~~~~P~fsp--DG~~l~f~~~-rdg~~-----~iy~~dl~~~~~~~Lt~~~gi~~--~Ps~spdG~~ivf~Sdr~G~ 305 (425)
T COG0823 236 FNGNNGAPAFSP--DGSKLAFSSS-RDGSP-----DIYLMDLDGKNLPRLTNGFGINT--SPSWSPDGSKIVFTSDRGGR 305 (425)
T ss_pred cCCccCCccCCC--CCCEEEEEEC-CCCCc-----cEEEEcCCCCcceecccCCcccc--CccCCCCCCEEEEEeCCCCC
Q ss_pred CCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCc-eEEec
Q 006473 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIK 225 (643)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~ 225 (643)
..+|++|+....=+++.. -.....+-...-++..++|=+..... .++..+|+.+.. |+.+.
T Consensus 306 ---------p~I~~~~~~g~~~~riT~---~~~~~~~p~~SpdG~~i~~~~~~~g~------~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 306 ---------PQIYLYDLEGSQVTRLTF---SGGGNSNPVWSPDGDKIVFESSSGGQ------WDIDKNDLASGGKIRILT 367 (425)
T ss_pred ---------cceEEECCCCCceeEeec---cCCCCcCccCCCCCCEEEEEeccCCc------eeeEEeccCCCCcEEEcc
Q ss_pred cCCCCCCCCCccceeEEEe
Q 006473 226 PRFGSMWPSPRSGFQFFVY 244 (643)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~ 244 (643)
.......|.....-.+..+
T Consensus 368 ~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 368 STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred ccccCCCCCcCCCCceEEE
No 211
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=27.39 E-value=7.5e+02 Score=26.01 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=67.7
Q ss_pred eEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCc
Q 006473 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 157 dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (643)
.+-.|+...++-...-..++|. ..++..+..=.++||.+ ..|-+||+.+..=..+... -.+.
T Consensus 36 slrlYdv~~~~l~~~~~~~~pl----L~c~F~d~~~~~~G~~d---------g~vr~~Dln~~~~~~igth-----~~~i 97 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAPL----LDCAFADESTIVTGGLD---------GQVRRYDLNTGNEDQIGTH-----DEGI 97 (323)
T ss_pred cEEEEeccchhhhhheecCCce----eeeeccCCceEEEeccC---------ceEEEEEecCCcceeeccC-----CCce
Confidence 3566777666322111111111 23344455555677753 4688899988766665544 1111
Q ss_pred cceeEEE-eCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEeccc
Q 006473 237 SGFQFFV-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (643)
Q Consensus 237 ~~~s~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~ 315 (643)
. ++.. .....+|.||++.. +-++|+... ... +..-.+-.-++|.+.+++|+ +|+.
T Consensus 98 ~--ci~~~~~~~~vIsgsWD~~----------------ik~wD~R~~----~~~-~~~d~~kkVy~~~v~g~~Lv-Vg~~ 153 (323)
T KOG1036|consen 98 R--CIEYSYEVGCVISGSWDKT----------------IKFWDPRNK----VVV-GTFDQGKKVYCMDVSGNRLV-VGTS 153 (323)
T ss_pred E--EEEeeccCCeEEEcccCcc----------------EEEEecccc----ccc-cccccCceEEEEeccCCEEE-Eeec
Confidence 1 1111 24566788888876 667776651 111 11222334556666666654 4554
Q ss_pred cccccCccccccccCCcEEEEECCCC
Q 006473 316 VDMEMKGDVIMSLFLNELYGFQLDNH 341 (643)
Q Consensus 316 ~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (643)
. ..+.+||+.+.
T Consensus 154 ~--------------r~v~iyDLRn~ 165 (323)
T KOG1036|consen 154 D--------------RKVLIYDLRNL 165 (323)
T ss_pred C--------------ceEEEEEcccc
Confidence 2 34888988765
No 212
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=26.68 E-value=38 Score=38.57 Aligned_cols=6 Identities=17% Similarity=0.711 Sum_probs=2.8
Q ss_pred EEEEcc
Q 006473 84 LILYGG 89 (643)
Q Consensus 84 lyvfGG 89 (643)
||-|-|
T Consensus 344 i~eFdG 349 (952)
T KOG1834|consen 344 IFEFDG 349 (952)
T ss_pred EEEEcC
Confidence 444444
No 213
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=26.09 E-value=8e+02 Score=26.78 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=76.9
Q ss_pred cCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE-CCEEEEE---eeeecCCCceeeeccEEEEEcCCCceEEeccCCCC
Q 006473 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVF---GGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (643)
Q Consensus 155 ~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~-~~~lyvf---GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (643)
...+...|+.+++.+.+-.. ..=-+|.-..- +..+++| |..+. +-..+|..+........+...
T Consensus 167 ~~~i~~idl~tG~~~~v~~~---~~wlgH~~fsP~dp~li~fCHEGpw~~------Vd~RiW~i~~dg~~~~~v~~~--- 234 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFED---TDWLGHVQFSPTDPTLIMFCHEGPWDL------VDQRIWTINTDGSNVKKVHRR--- 234 (386)
T ss_dssp -EEEEEEETTT--EEEEEEE---SS-EEEEEEETTEEEEEEEEE-S-TTT------SS-SEEEEETTS---EESS-----
T ss_pred CceEEEEECCCCceeEEEec---CccccCcccCCCCCCEEEEeccCCcce------eceEEEEEEcCCCcceeeecC---
Confidence 45688889999988776441 12234544432 3344444 33321 234799999886655555433
Q ss_pred CCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEE
Q 006473 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRAL 310 (643)
Q Consensus 231 ~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iy 310 (643)
.+.-..+|-....++..+.+=++... ..-.-+..||+.+..=..+.. .+++.|-++..++.++
T Consensus 235 -~~~e~~gHEfw~~DG~~i~y~~~~~~-----------~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~ 297 (386)
T PF14583_consen 235 -MEGESVGHEFWVPDGSTIWYDSYTPG-----------GQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLF 297 (386)
T ss_dssp --TTEEEEEEEE-TTSS-EEEEEEETT-----------T--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEE
T ss_pred -CCCcccccccccCCCCEEEEEeecCC-----------CCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEE
Confidence 14566677776665544444222111 112237788888764333433 2467888888899998
Q ss_pred EeccccccccCccccccccCC--cEEEEECCCCcEEEeEe
Q 006473 311 LFGGVVDMEMKGDVIMSLFLN--ELYGFQLDNHRWYPLEL 348 (643)
Q Consensus 311 vfGG~~~~~~~~~~~~~~~~n--dl~~yd~~t~~W~~l~~ 348 (643)
+=-|..............+.| -||+|+++..+-..|..
T Consensus 298 vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 298 VGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR 337 (386)
T ss_dssp EEEE-------------------EEEEEETTTTEEEEEEE
T ss_pred EecCCCCCccccccccceecCCcEEEEeccccCceeeeee
Confidence 876754221100000011122 36667888777766665
No 214
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=25.48 E-value=49 Score=38.51 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.7
Q ss_pred EEEEEC
Q 006473 103 LYRYDV 108 (643)
Q Consensus 103 v~~yd~ 108 (643)
.|.+||
T Consensus 250 T~Lidp 255 (960)
T KOG1189|consen 250 TYLIDP 255 (960)
T ss_pred eeeecc
Confidence 344455
No 215
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.03 E-value=9.6e+02 Score=26.50 Aligned_cols=17 Identities=18% Similarity=0.620 Sum_probs=14.6
Q ss_pred EEEEeCCCCeeEEeccC
Q 006473 274 LWSLDPRTWEWSKVKKI 290 (643)
Q Consensus 274 v~~yd~~t~~W~~l~~~ 290 (643)
+|.|+-.+..|+.+...
T Consensus 456 Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEEecccccceeeehh
Confidence 78888889999999764
No 216
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.76 E-value=29 Score=34.99 Aligned_cols=6 Identities=0% Similarity=0.091 Sum_probs=2.4
Q ss_pred CCEEEE
Q 006473 189 KHKIIV 194 (643)
Q Consensus 189 ~~~lyv 194 (643)
++.+|+
T Consensus 57 ~g~~yL 62 (303)
T KOG3064|consen 57 NGVLYL 62 (303)
T ss_pred CCEEEE
Confidence 334444
No 217
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=24.69 E-value=48 Score=36.75 Aligned_cols=8 Identities=25% Similarity=0.742 Sum_probs=5.8
Q ss_pred HhhHHHHH
Q 006473 609 RRTSMYWQ 616 (643)
Q Consensus 609 ~rt~~~w~ 616 (643)
.||.--|+
T Consensus 198 grqrklWk 205 (694)
T KOG4264|consen 198 GRQRKLWK 205 (694)
T ss_pred hhhhhhhh
Confidence 46777787
No 218
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.56 E-value=3.2e+02 Score=30.78 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=46.8
Q ss_pred eeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 006473 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (643)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (643)
+++.|+.+|+.++.=-.-.+. ....+..+....+.+++++|+++. ..-.+..+|+.+..-.+
T Consensus 373 ~ls~LvllD~~tg~~l~~S~~------~~Ir~r~~~~~~~~~vaI~g~~G~------------~~ikLvlid~~tLev~k 434 (489)
T PF05262_consen 373 YLSELVLLDSDTGDTLKRSPV------NGIRGRTFYEREDDLVAIAGCSGN------------AAIKLVLIDPETLEVKK 434 (489)
T ss_pred cceeEEEEeCCCCceeccccc------ceeccceeEEcCCCEEEEeccCCc------------hheEEEecCcccceeee
Confidence 688999999988752222222 233445566678889999998654 12224455666655444
Q ss_pred eccCCCCCCCceee-EEEEECCeEEEe
Q 006473 287 VKKIGMPPGPRAGF-SMCVHKKRALLF 312 (643)
Q Consensus 287 l~~~g~~P~~R~g~-s~~~~~~~iyvf 312 (643)
-..- ..+.. .+.+.++.+|+|
T Consensus 435 es~~-----~i~~~S~l~~~~~~iyaV 456 (489)
T PF05262_consen 435 ESED-----EISWQSSLIVDGQMIYAV 456 (489)
T ss_pred eccc-----cccccCceEEcCCeEEEE
Confidence 3321 11222 344456667754
No 219
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=24.42 E-value=45 Score=36.61 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=3.2
Q ss_pred EEEecceE
Q 006473 466 LYVYGGMM 473 (643)
Q Consensus 466 Lyi~GG~~ 473 (643)
|+-||=..
T Consensus 167 l~~~gmLl 174 (615)
T KOG3540|consen 167 LHSYGMLL 174 (615)
T ss_pred eeccccee
Confidence 33444333
No 220
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=24.20 E-value=8.6e+02 Score=25.62 Aligned_cols=192 Identities=16% Similarity=0.116 Sum_probs=82.6
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCCcEEEeccCC---CCCCC---ceeEEEEECCEEEEEeeeecC
Q 006473 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQWEQLNLKG---CPSPR---SGHRMVLYKHKIIVFGGFYDT 201 (643)
Q Consensus 129 a~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~-~t~~W~~~~~~g---~P~~R---s~h~~~~~~~~lyvfGG~~~~ 201 (643)
+++.+++.|+.|.......... ..+..-+..+-. ...+|....... ....| .....++-++.||++=|.+..
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~-~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSND-SGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-S-SS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CEEEECCEEEEEEEEEEccCCC-CCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 4677789888887543211110 112233444543 345787643210 11122 234455568999999877653
Q ss_pred CCceeeeccEEEE--EcCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCCCCCCCCccC------CCCCCce-ee
Q 006473 202 LREVRYYNDLYVF--DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN------QSEKGII-HS 272 (643)
Q Consensus 202 ~~~~~~~~dv~~y--D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~------~~~~~~~-~~ 272 (643)
..... .-++..+ +-...+|......+... + .+ ...||-||-++....+.. ....... .-
T Consensus 82 ~~~~~-~~~llLvks~~~g~~W~~~~~l~~~~-~----~~------~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~ 149 (310)
T PF13859_consen 82 SAGAD-DWGLLLVKSTDGGIKWGDTKSLPSTS-F----QS------WKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTV 149 (310)
T ss_dssp --SST-TEEEEEEEEESSSSEE---EE-GGGS------EE------EEEEEE-SEE-EE-TTS-EEEEEEEEETT---EE
T ss_pred ccccc-ccceeeeeccCCcceeeecccCCchh-c----cc------cceeecCCCCceEEcCCCEEEEEeeeccCccceE
Confidence 21111 1122223 22234698877663211 1 00 002333333332111000 0001111 34
Q ss_pred eEEEEeCC-CCeeEEeccCCCCCCCceeeEEEEE-CCeEEEeccccccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 273 DLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 273 dv~~yd~~-t~~W~~l~~~g~~P~~R~g~s~~~~-~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
.+.+|... ...|+.-+ |.+|.....++++-+ +++|+++.-+.+- ...||.=.=.-.+|+..
T Consensus 150 SlIiYS~d~g~~W~lsk--g~s~~gC~~psv~EWe~gkLlM~~~c~~g-----------~rrVYeS~DmG~tWtea 212 (310)
T PF13859_consen 150 SLIIYSTDDGKTWKLSK--GMSPAGCSDPSVVEWEDGKLLMMTACDDG-----------RRRVYESGDMGTTWTEA 212 (310)
T ss_dssp EEEEEESSTTSS-EE-S------TT-EEEEEEEE-TTEEEEEEE-TTS--------------EEEESSTTSS-EE-
T ss_pred EEEEEECCCccceEecc--ccCCCCcceEEEEeccCCeeEEEEecccc-----------eEEEEEEcccceehhhc
Confidence 57778766 77999855 556778888899999 7899999765441 23455544445689863
No 221
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=24.17 E-value=65 Score=34.24 Aligned_cols=9 Identities=11% Similarity=0.556 Sum_probs=5.0
Q ss_pred CcHHHHHHh
Q 006473 602 ESLKDFYRR 610 (643)
Q Consensus 602 e~~~~f~~r 610 (643)
..|--|+.|
T Consensus 234 ~dIe~~~Kk 242 (324)
T PF05285_consen 234 SDIEGFHKK 242 (324)
T ss_pred HHHHhHHhh
Confidence 345556666
No 222
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=23.70 E-value=26 Score=41.42 Aligned_cols=10 Identities=0% Similarity=0.268 Sum_probs=4.4
Q ss_pred CcEEEEECCC
Q 006473 331 NELYGFQLDN 340 (643)
Q Consensus 331 ndl~~yd~~t 340 (643)
..+|.+.+.+
T Consensus 536 ~~~~lv~~t~ 545 (787)
T PF03115_consen 536 SSFFLVKVTK 545 (787)
T ss_dssp EEEEEEEESS
T ss_pred EEEEEEEEec
Confidence 3344444443
No 223
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.50 E-value=7.5e+02 Score=29.06 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=15.4
Q ss_pred ECCeEEEeccccccccCccccccccCCcEEEEECCC
Q 006473 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (643)
Q Consensus 305 ~~~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (643)
.+|.+++.||.+ |.|-.||+..
T Consensus 629 ~dg~vLasgg~D--------------nsV~lWD~~~ 650 (707)
T KOG0263|consen 629 RDGNVLASGGAD--------------NSVRLWDLTK 650 (707)
T ss_pred cCCCEEEecCCC--------------CeEEEEEchh
Confidence 378888888864 4577777653
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=23.14 E-value=5.9e+02 Score=26.98 Aligned_cols=129 Identities=9% Similarity=0.113 Sum_probs=66.6
Q ss_pred ccEEEEECCCCc-EEEecCCCCC-CCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEEC-CCCcEEEeccCCCC
Q 006473 101 GDLYRYDVEKQE-WKVISSPNSP-PPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQWEQLNLKGCP 177 (643)
Q Consensus 101 ndv~~yd~~~~~-W~~l~s~~~P-~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD~-~t~~W~~~~~~g~P 177 (643)
+++.+|.-..+. |......... ....+-......++|.- ++.. +.-|++.. ..++|.....
T Consensus 32 ~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt-cs~d-----------rnayVw~~~~~~~Wkptlv---- 95 (361)
T KOG1523|consen 32 HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT-CSHD-----------RNAYVWTQPSGGTWKPTLV---- 95 (361)
T ss_pred ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE-ccCC-----------CCccccccCCCCeecccee----
Confidence 589999998888 9876543211 11122112222445543 3322 22334444 6778876433
Q ss_pred CCCceeEEEEE----CCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEE
Q 006473 178 SPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLY 251 (643)
Q Consensus 178 ~~Rs~h~~~~~----~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~ 251 (643)
.-|.+-++..+ +...|++|+- + .+-.|+.|.-+++=|-.-... .+-|+.-..+.. ++-+...
T Consensus 96 LlRiNrAAt~V~WsP~enkFAVgSg---a----r~isVcy~E~ENdWWVsKhik-----kPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 96 LLRINRAATCVKWSPKENKFAVGSG---A----RLISVCYYEQENDWWVSKHIK-----KPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred EEEeccceeeEeecCcCceEEeccC---c----cEEEEEEEecccceehhhhhC-----CccccceeeeeccCCcceecc
Confidence 34444444443 4455555542 1 266788888777766444333 233444333333 6666666
Q ss_pred cCCCCC
Q 006473 252 GGYSKE 257 (643)
Q Consensus 252 GG~~~~ 257 (643)
|+.+..
T Consensus 164 Gs~D~k 169 (361)
T KOG1523|consen 164 GSTDGK 169 (361)
T ss_pred cccCcc
Confidence 666554
No 225
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=22.89 E-value=46 Score=37.94 Aligned_cols=6 Identities=33% Similarity=1.049 Sum_probs=3.2
Q ss_pred EEEEeC
Q 006473 137 LYIFGG 142 (643)
Q Consensus 137 iyvfGG 142 (643)
||-|-|
T Consensus 344 i~eFdG 349 (952)
T KOG1834|consen 344 IFEFDG 349 (952)
T ss_pred EEEEcC
Confidence 555555
No 226
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.77 E-value=2.6e+02 Score=32.26 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=44.5
Q ss_pred ceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCc------EEEecCCCCC-CCce-eeEEEEE-CCEEEEEe
Q 006473 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE------WKVISSPNSP-PPRS-AHQAVSW-KNYLYIFG 141 (643)
Q Consensus 71 ~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~------W~~l~s~~~P-~pRs-~ha~~~~-~~~iyvfG 141 (643)
+..+++.+.+++.+++-||. -..++.||+.+.. ...++...++ .|+. -++++.. .+.++|-|
T Consensus 119 YVkcla~~ak~~~lvaSgGL---------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGL---------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hheeeeecccCceeEEecCC---------CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 34455554567899999994 2356666666542 2223322233 3333 3444443 34677777
Q ss_pred CccCCCCCCcceecCeEEEEECCCCc
Q 006473 142 GEFTSPNQERFHHYKDFWMLDLKTNQ 167 (643)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~ 167 (643)
|. -+++-.||+.+.+
T Consensus 190 gt-----------ek~lr~wDprt~~ 204 (735)
T KOG0308|consen 190 GT-----------EKDLRLWDPRTCK 204 (735)
T ss_pred Cc-----------ccceEEecccccc
Confidence 74 3678899998764
No 227
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.74 E-value=1.3e+03 Score=27.35 Aligned_cols=158 Identities=13% Similarity=0.155 Sum_probs=79.1
Q ss_pred eeEEEEEC--CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEECCEEEEEeeeecCCCc
Q 006473 127 AHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (643)
Q Consensus 127 ~ha~~~~~--~~iyvfGG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfGG~~~~~~~ 204 (643)
.-..++++ |.-+.||+.. +..+.+|+-.+.+.---.. ....|-......-++.+++.|+-+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k----------lgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD----- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK----------LGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAED----- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCCc----------cceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCC-----
Confidence 33444554 6666777642 2345555544444322111 133443322222367888888753
Q ss_pred eeeeccEEEEEcCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCC
Q 006473 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (643)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (643)
..|-+||..+.- ..+... .+-++++++.+ .+..++.--.++. +-.+|+...
T Consensus 372 ----gKVKvWn~~Sgf-C~vTFt------eHts~Vt~v~f~~~g~~llssSLDGt----------------VRAwDlkRY 424 (893)
T KOG0291|consen 372 ----GKVKVWNTQSGF-CFVTFT------EHTSGVTAVQFTARGNVLLSSSLDGT----------------VRAWDLKRY 424 (893)
T ss_pred ----CcEEEEeccCce-EEEEec------cCCCceEEEEEEecCCEEEEeecCCe----------------EEeeeeccc
Confidence 356777776542 222222 33345544443 5555555544443 333333222
Q ss_pred e-eEEeccCCCCCCCceeeEEEEEC--CeEEEeccccccccCccccccccCCcEEEEECCCCcEEEe
Q 006473 283 E-WSKVKKIGMPPGPRAGFSMCVHK--KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (643)
Q Consensus 283 ~-W~~l~~~g~~P~~R~g~s~~~~~--~~iyvfGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (643)
+ ..... .|.| ..++++.++ |-|++.|+.+. -+++++++.|++-..+
T Consensus 425 rNfRTft----~P~p-~QfscvavD~sGelV~AG~~d~-------------F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 425 RNFRTFT----SPEP-IQFSCVAVDPSGELVCAGAQDS-------------FEIFVWSVQTGQLLDI 473 (893)
T ss_pred ceeeeec----CCCc-eeeeEEEEcCCCCEEEeeccce-------------EEEEEEEeecCeeeeh
Confidence 1 11111 2444 455555555 78888887643 3588888888775543
No 228
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.69 E-value=7.5e+02 Score=26.14 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=51.4
Q ss_pred EEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEE--EE--CCEEEEEeCccCCCC
Q 006473 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV--SW--KNYLYIFGGEFTSPN 148 (643)
Q Consensus 73 s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~--~~--~~~iyvfGG~~~~~~ 148 (643)
++.+.| .+.++++|-. .+.+..||+.+-+ ...+.+ |.-....+++ .+ .+.|||.|...+
T Consensus 221 siSfHP--sGefllvgTd---------Hp~~rlYdv~T~Q--cfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG--- 283 (430)
T KOG0640|consen 221 SISFHP--SGEFLLVGTD---------HPTLRLYDVNTYQ--CFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG--- 283 (430)
T ss_pred eEeecC--CCceEEEecC---------CCceeEEecccee--EeeecC-cccccccceeEEEecCCccEEEEeccCC---
Confidence 344566 5667777762 3567788887654 444444 3322222222 22 689999987543
Q ss_pred CCcceecCeEEEEECCCCcEEEeccCCCCCCCceeEEEEE--CCEEEEEeeee
Q 006473 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFY 199 (643)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~g~P~~Rs~h~~~~~--~~~lyvfGG~~ 199 (643)
.+-.||-.++..-. +.+.-..-+.-+.+++ +++.++-.|.+
T Consensus 284 --------~IklwDGVS~rCv~--t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 284 --------AIKLWDGVSNRCVR--TIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred --------cEEeeccccHHHHH--HHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 45567776665422 1111111122222333 56666666753
No 229
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=22.16 E-value=75 Score=31.61 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CCCCCcHHHHHHhhHHHHHHHHhh
Q 006473 598 PMPGESLKDFYRRTSMYWQMAAHE 621 (643)
Q Consensus 598 p~p~e~~~~f~~rt~~~w~~~~~~ 621 (643)
|-.||||.+..+|+..||++.+..
T Consensus 128 ~p~~EsL~~~~~R~~~~~~e~i~~ 151 (214)
T KOG0235|consen 128 LPDGESLKDCLDRLLPFWNEEIAK 151 (214)
T ss_pred CCCCccHHHHHHHHHHHHHHhhhh
Confidence 557999999999999999988864
No 230
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=21.25 E-value=60 Score=37.14 Aligned_cols=6 Identities=50% Similarity=1.094 Sum_probs=2.8
Q ss_pred hhcccc
Q 006473 506 EWVEAS 511 (643)
Q Consensus 506 ~w~~~~ 511 (643)
+|-+++
T Consensus 526 EWEEEe 531 (811)
T KOG4364|consen 526 EWEEEE 531 (811)
T ss_pred cccccC
Confidence 365443
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.04 E-value=1.4e+03 Score=26.87 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=32.6
Q ss_pred CceEEEEeccCCCEEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCc
Q 006473 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGE 143 (643)
Q Consensus 70 ~~~s~~~~~~~~~~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~ 143 (643)
+-|-+++-|. +.+|++..| +.++.||+..+.--+ +.....--....+-+.+++.|..||.
T Consensus 14 ci~d~afkPD-GsqL~lAAg-----------~rlliyD~ndG~llq--tLKgHKDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAAG-----------SRLLVYDTSDGTLLQ--PLKGHKDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCC-CceEEEecC-----------CEEEEEeCCCccccc--ccccccceEEEEEEccCCceeccCCC
Confidence 4455666664 467887777 578999998764221 11000001111111227788888874
No 232
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=20.80 E-value=62 Score=36.85 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCCCCCCchhhhhhcCCCCCcccCChhhhhhh
Q 006473 511 SEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVAIIK 567 (643)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (643)
+++|.|++.++-|+.+.++++.|++.++ ||+++|..+.+......-..++..+-++
T Consensus 927 sddE~deseeEvSEyeaS~dd~sdet~e-dees~e~seD~sedeSe~~~~DeE~gED 982 (1001)
T COG5406 927 SDDESDESEEEVSEYEASSDDESDETDE-DEESDESSEDLSEDESENDSSDEEDGED 982 (1001)
T ss_pred CcccccccchhhhhhhccCCCccccccc-cccccccccccccccccccccccccccc
No 233
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.66 E-value=1.2e+03 Score=25.86 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEEEcceecCCCCceeeccEEEEECCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEE
Q 006473 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (643)
Q Consensus 83 ~lyvfGG~~~~g~~~~~~ndv~~yd~~~~~W~~l~s~~~P~pRs~ha~~~~~~~iyvfGG~~~~~~~~~~~~~~dv~~yD 162 (643)
.|+.-|| .-+.|..+|..+.+-...-.-. -.+.....+-.....+.|.|++.. .-.+.|+-.-+
T Consensus 257 nVLaSgs---------aD~TV~lWD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~------~V~l~D~R~~~ 320 (463)
T KOG0270|consen 257 NVLASGS---------ADKTVKLWDVDTGKPKSSITHH-GKKVQTLEWHPYEPSVLLSGSYDG------TVALKDCRDPS 320 (463)
T ss_pred eeEEecC---------CCceEEEEEcCCCCcceehhhc-CCceeEEEecCCCceEEEeccccc------eEEeeeccCcc
Q ss_pred CCCCcEEEeccCCCCCCCceeEEEEECCEEEEEe---eeecCCCceeeeccEEEEEcCCC---ceEEeccCCCCCCCCCc
Q 006473 163 LKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFG---GFYDTLREVRYYNDLYVFDLDQF---KWQEIKPRFGSMWPSPR 236 (643)
Q Consensus 163 ~~t~~W~~~~~~g~P~~Rs~h~~~~~~~~lyvfG---G~~~~~~~~~~~~dv~~yD~~t~---~W~~v~~~~~~~~P~~R 236 (643)
.....|. .-...-.-.--...-..+++| |. |+.||+... .|+..+.- .+.
T Consensus 321 ~s~~~wk------~~g~VEkv~w~~~se~~f~~~tddG~------------v~~~D~R~~~~~vwt~~AHd------~~I 376 (463)
T KOG0270|consen 321 NSGKEWK------FDGEVEKVAWDPHSENSFFVSTDDGT------------VYYFDIRNPGKPVWTLKAHD------DEI 376 (463)
T ss_pred ccCceEE------eccceEEEEecCCCceeEEEecCCce------------EEeeecCCCCCceeEEEecc------CCc
Q ss_pred cceeEEEeCCEEEEEcCCCCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeccCCCCCCCceeeEEEEECCeEEEecccc
Q 006473 237 SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (643)
Q Consensus 237 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~g~s~~~~~~~iyvfGG~~ 316 (643)
++-++....-.+...+|..+. -.+|-++....+-.....+...- ..+++.+..-..+|+|||.
T Consensus 377 Sgl~~n~~~p~~l~t~s~d~~--------------Vklw~~~~~~~~~v~~~~~~~~r--l~c~~~~~~~a~~la~GG~- 439 (463)
T KOG0270|consen 377 SGLSVNIQTPGLLSTASTDKV--------------VKLWKFDVDSPKSVKEHSFKLGR--LHCFALDPDVAFTLAFGGE- 439 (463)
T ss_pred ceEEecCCCCcceeeccccce--------------EEEEeecCCCCcccccccccccc--eeecccCCCcceEEEecCc-
Q ss_pred ccccCccccccccCCcEEEEECCCCc
Q 006473 317 DMEMKGDVIMSLFLNELYGFQLDNHR 342 (643)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (643)
.+-+-++|+.++.
T Consensus 440 -------------k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 440 -------------KAVLRVWDIFTNS 452 (463)
T ss_pred -------------cceEEEeecccCh
No 234
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=20.12 E-value=2e+02 Score=31.51 Aligned_cols=30 Identities=23% Similarity=0.629 Sum_probs=22.9
Q ss_pred eEEEEECCEEEEEeeeecCCCceeeeccEEEEEcCCCceEEec
Q 006473 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (643)
Q Consensus 183 h~~~~~~~~lyvfGG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (643)
-++..+++++|+||| +.+|+|| .+.|+.+.
T Consensus 569 ~RA~fi~dylY~vg~-----------~ev~~ld--enswe~Vg 598 (603)
T COG4880 569 DRAFFIKDYLYLVGG-----------NEVWKLD--ENSWEVVG 598 (603)
T ss_pred eeeEEecceEEEecc-----------ceeEEec--cchHhhhh
Confidence 356778999999998 5688887 45677654
Done!